Citrus Sinensis ID: 045672
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 643 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SI53 | 630 | Pentatricopeptide repeat- | yes | no | 0.958 | 0.977 | 0.699 | 0.0 | |
| Q9LIQ7 | 633 | Pentatricopeptide repeat- | no | no | 0.886 | 0.900 | 0.420 | 1e-146 | |
| Q9LZ19 | 635 | Pentatricopeptide repeat- | no | no | 0.878 | 0.889 | 0.407 | 1e-134 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.917 | 0.554 | 0.384 | 1e-134 | |
| Q9LIC3 | 628 | Putative pentatricopeptid | no | no | 0.912 | 0.934 | 0.395 | 1e-133 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.909 | 0.673 | 0.404 | 1e-132 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.912 | 0.673 | 0.377 | 1e-132 | |
| Q9M2Y7 | 721 | Pentatricopeptide repeat- | no | no | 0.954 | 0.851 | 0.408 | 1e-132 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.953 | 0.857 | 0.356 | 1e-132 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.872 | 0.718 | 0.392 | 1e-130 |
| >sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/618 (69%), Positives = 511/618 (82%), Gaps = 2/618 (0%)
Query: 28 PVAS--CNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCL 85
PV + C+ + + + LL +FTR CYQRDLPRAMKAM ++Q HG+ ADS TY+ELIKCC+
Sbjct: 13 PVVTLRCSYSSTDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCI 72
Query: 86 ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTT 145
+ AV E L+ H+ G P FLVN+L+NM+VKF+LL +A LFDQMP+RNV+SWTT
Sbjct: 73 SNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTT 132
Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES 205
MISAY K++ KALELL+ MLR+ VRPN++TYS+VLR+C+ + +R LHCGIIK G ES
Sbjct: 133 MISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLES 192
Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
DVFVRSALID++AKLGE +A VF+EM T D +VWNSIIGGFAQNS D AL L+KRMK
Sbjct: 193 DVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK 252
Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDA 325
RAGF A+Q+TLTSVLRACTGLALLELG Q HVH++KYD DLILNNAL+DMYCKCGSLEDA
Sbjct: 253 RAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDA 312
Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
+ VF++M ++DVI+WSTMISGLAQNGYSQEALKLFE MK S KPNYITIVGVLFACSHA
Sbjct: 313 LRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHA 372
Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
G +EDGW +F+SMKK YGIDP REHY CMIDLLG+AGKL +AVKL++EM EPDAVTWR
Sbjct: 373 GLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 432
Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
LLGAC+V RN LA AAKK++ LDP+D GTY LLSNIYANSQKWD V E+R MR RGI
Sbjct: 433 LLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGI 492
Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
KEPGCSWIEVNKQIHAF + D+SHPQI +++K L LI +L G+GY P+TN+VLQDLEG
Sbjct: 493 KKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEG 552
Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
EQ EDS+++HSEKLA+ FGLM+L K IRIRKNLRICGDCH F KL +K+E ++IVIRD
Sbjct: 553 EQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRD 612
Query: 626 PIRYHHFQDGNCSCGDYW 643
PIRYHHFQDG CSCGDYW
Sbjct: 613 PIRYHHFQDGKCSCGDYW 630
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 520 bits (1339), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/582 (42%), Positives = 379/582 (65%), Gaps = 12/582 (2%)
Query: 70 VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQ 129
+ AD Y L+K C + + ++VH H+L F + + N LLNM+ K LEEA+
Sbjct: 56 IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115
Query: 130 VLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF---MLREGVRPNMFTYSAVLRACD 186
+F++MP+R+ V+WTT+IS Y +D+ + L+F MLR G PN FT S+V++A
Sbjct: 116 KVFEKMPQRDFVTWTTLISGY---SQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA 172
Query: 187 SL---IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNS 243
+ QLH +K GF+S+V V SAL+D+Y + G + +A+ VF+ + +R+ V WN+
Sbjct: 173 AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNA 232
Query: 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD 303
+I G A+ S ++AL L++ M R GF + S+ AC+ LE G VH +++K
Sbjct: 233 LIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSG 292
Query: 304 HDLIL--NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
L+ N LLDMY K GS+ DA +F R+ ++DV+SW+++++ AQ+G+ +EA+ FE
Sbjct: 293 EKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFE 352
Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
M+ I+PN I+ + VL ACSH+G +++GW++++ MKK GI P HY ++DLLGRA
Sbjct: 353 EMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKK-DGIVPEAWHYVTVVDLLGRA 411
Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
G L A++ I EMP EP A W+ALL AC++H+NT+L AA+ + LDP DPG +++L
Sbjct: 412 GDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILY 471
Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
NIYA+ +W++ A VRK M+ G+ KEP CSW+E+ IH F D HPQ ++I + +
Sbjct: 472 NIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWE 531
Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
++ K+ +GY PDT++V+ ++ +++E ++QYHSEK+A+ F L++ G TI I+KN+R
Sbjct: 532 EVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIR 591
Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
+CGDCHT KL +K+ + I++RD R+HHF+DGNCSC DYW
Sbjct: 592 VCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 481 bits (1237), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/570 (40%), Positives = 363/570 (63%), Gaps = 5/570 (0%)
Query: 79 ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138
E+++ C AV EAK H ++ E + L+N+L+N + K +E A+ +FD M ER
Sbjct: 66 EILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLER 125
Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILRQLH 195
++VSW TMI Y +M +AL++ + M EG + + FT S+VL AC + ++LH
Sbjct: 126 SLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLH 185
Query: 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD 255
C +K + +++V +AL+D+YAK G +++A VF M + V W+S++ G+ QN + +
Sbjct: 186 CLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYE 245
Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALL 313
EAL LY+R +R +Q TL+SV+ AC+ LA L G Q+H + K + ++ + ++ +
Sbjct: 246 EALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAV 305
Query: 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
DMY KCGSL ++ +FS + +K++ W+T+ISG A++ +E + LFE M+ + PN +
Sbjct: 306 DMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEV 365
Query: 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE 433
T +L C H G VE+G FK M+ YG+ P HYSCM+D+LGRAG L EA +LI
Sbjct: 366 TFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKS 425
Query: 434 MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493
+P++P A W +LL +C+V++N +LA AA+K+ L+P++ G ++LLSNIYA +++W+E+
Sbjct: 426 IPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEI 485
Query: 494 AEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYA 553
A+ RK +R + K G SWI++ ++H F+V +S HP+I +I L +L+ K GY
Sbjct: 486 AKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYK 545
Query: 554 PDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLT 613
P + L D+E +KE+ + HSEKLA+VFGLM L + +RI KNLRIC DCH F K
Sbjct: 546 PSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAA 605
Query: 614 AKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
+ + I++RD R+HHF DG+CSCGD+W
Sbjct: 606 SMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 479 bits (1232), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/595 (38%), Positives = 358/595 (60%), Gaps = 5/595 (0%)
Query: 54 DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
DL + + MQ + + TY ++K C+ +E + +H+ ++ F+ ++ +
Sbjct: 470 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCS 529
Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
+L++M+ K L+ A + + ++VVSWTTMI+ Y +DKAL ML G+R
Sbjct: 530 VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 589
Query: 174 NMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
+ + + AC L L+ Q+H GF SD+ ++AL+ +Y++ G++ + F
Sbjct: 590 DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF 649
Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
+ D + WN+++ GF Q+ + +EAL ++ RM R G + T S ++A + A ++
Sbjct: 650 EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMK 709
Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
G QVH + K YD + + NAL+ MY KCGS+ DA F + K+ +SW+ +I+ +
Sbjct: 710 QGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYS 769
Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
++G+ EAL F+ M S ++PN++T+VGVL ACSH G V+ G +F+SM YG+ P
Sbjct: 770 KHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKP 829
Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
EHY C++D+L RAG L A + I EMP +PDA+ WR LL AC VH+N ++ AA +L
Sbjct: 830 EHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLE 889
Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
L+P+D TY+LLSN+YA S+KWD R+ M+ +G+ KEPG SWIEV IH+F V D
Sbjct: 890 LEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQ 949
Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
+HP D+I+++ + L ++ +GY D +L +L+ EQK+ I HSEKLAI FGL+SL
Sbjct: 950 NHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSL 1009
Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
I + KNLR+C DCH + K +K+ N+ I++RD R+HHF+ G CSC DYW
Sbjct: 1010 PATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 475 bits (1222), Expect = e-133, Method: Compositional matrix adjust.
Identities = 235/594 (39%), Positives = 366/594 (61%), Gaps = 7/594 (1%)
Query: 57 RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
R +A+ M G Y L+ CL + A+ + + VH H++ + P T+L LL
Sbjct: 35 RLQEALLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLL 94
Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
+ K LE+A+ + D+MPE+NVVSWT MIS Y + +AL + M+R +PN F
Sbjct: 95 IFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEF 154
Query: 177 TYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
T++ VL +C L + +Q+H I+K ++S +FV S+L+D+YAK G+++ A +F +
Sbjct: 155 TFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECL 214
Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
P RD+V +II G+AQ +EAL ++ R+ G + + T S+L A +GLALL+ G
Sbjct: 215 PERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGK 274
Query: 294 QVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
Q H HVL+ + +L N+L+DMY KCG+L A +F M ++ ISW+ M+ G +++G
Sbjct: 275 QAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHG 334
Query: 352 YSQEALKLFESMK-VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM-KKFYGIDPGRE 409
+E L+LF M+ R+KP+ +T++ VL CSH + G N F M YG PG E
Sbjct: 335 LGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTE 394
Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
HY C++D+LGRAG++ EA + I MP +P A +LLGAC+VH + D+ ++++ +
Sbjct: 395 HYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEI 454
Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
+P++ G Y++LSN+YA++ +W +V VR M + +TKEPG SWI+ + +H F+ D +
Sbjct: 455 EPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRT 514
Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
HP+ +++ +K + K+ GY PD + VL D++ EQKE + HSEKLA+ FGL++
Sbjct: 515 HPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATG 574
Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
+G IR+ KNLRIC DCH FAK+ +K+ + + +RD R+H DG CSCGDYW
Sbjct: 575 EGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 473 bits (1218), Expect = e-132, Method: Compositional matrix adjust.
Identities = 239/591 (40%), Positives = 365/591 (61%), Gaps = 6/591 (1%)
Query: 58 AMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117
A+ ++M+ + VR ++A +IK C + + +H V+ GF + + L+
Sbjct: 279 ALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMV 338
Query: 118 MHVKFSLLEEAQVLFDQMP-ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
+ K + + +A LF ++ NVVSWT MIS + ++A++L M R+GVRPN F
Sbjct: 339 AYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEF 398
Query: 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236
TYS +L A +I ++H ++K +E V +AL+D Y KLG++ A VF+ + +
Sbjct: 399 TYSVILTAL-PVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDK 457
Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL-ALLELGTQV 295
D+V W++++ G+AQ + + A+ ++ + + G ++ T +S+L C A + G Q
Sbjct: 458 DIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQF 517
Query: 296 HVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYS 353
H +K D L +++ALL MY K G++E A VF R +KD++SW++MISG AQ+G +
Sbjct: 518 HGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQA 577
Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
+AL +F+ MK ++K + +T +GV AC+HAG VE+G +F M + I P +EH SC
Sbjct: 578 MKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSC 637
Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
M+DL RAG+L++A+K+I MP + WR +L AC+VH+ T+L AA+KI+ + P+D
Sbjct: 638 MVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPED 697
Query: 474 PGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQI 533
Y+LLSN+YA S W E A+VRK M R + KEPG SWIEV + ++F D SHP
Sbjct: 698 SAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLK 757
Query: 534 DKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKT 593
D+I L+ L +L +GY PDT+YVLQD++ E KE + HSE+LAI FGL++ +G
Sbjct: 758 DQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSP 817
Query: 594 IRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHF-QDGNCSCGDYW 643
+ I KNLR+CGDCH KL AK+E + IV+RD R+HHF DG CSCGD+W
Sbjct: 818 LLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 473 bits (1217), Expect = e-132, Method: Compositional matrix adjust.
Identities = 224/593 (37%), Positives = 367/593 (61%), Gaps = 6/593 (1%)
Query: 57 RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
+ + M G+ D T + C + + VH+ + F E N LL
Sbjct: 279 KGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLL 338
Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
+M+ K L+ A+ +F +M +R+VVS+T+MI+ Y + +A++L M EG+ P+++
Sbjct: 339 DMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVY 398
Query: 177 TYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
T +AVL C +L +++H I + D+FV +AL+D+YAK G ++ AE VF+EM
Sbjct: 399 TVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEM 458
Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELG 292
+D++ WN+IIGG+++N +EAL+L+ + + F+ D+ T+ VL AC L+ + G
Sbjct: 459 RVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKG 518
Query: 293 TQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN 350
++H ++++ Y D + N+L+DMY KCG+L A +F + KD++SW+ MI+G +
Sbjct: 519 REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMH 578
Query: 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH 410
G+ +EA+ LF M+ + I+ + I+ V +L+ACSH+G V++GW F M+ I+P EH
Sbjct: 579 GFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEH 638
Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470
Y+C++D+L R G L +A + I MP PDA W ALL C++H + LA A+K+ L+
Sbjct: 639 YACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELE 698
Query: 471 PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSH 530
P++ G Y+L++NIYA ++KW++V +RK + RG+ K PGCSWIE+ +++ F DSS+
Sbjct: 699 PENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSN 758
Query: 531 PQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQ 590
P+ + I L+ + +++ GY+P T Y L D E +KE+++ HSEKLA+ G++S
Sbjct: 759 PETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGH 818
Query: 591 GKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
GK IR+ KNLR+CGDCH AK +K+ + IV+RD R+H F+DG+CSC +W
Sbjct: 819 GKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 262/641 (40%), Positives = 383/641 (59%), Gaps = 27/641 (4%)
Query: 18 ARQ-FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVT 76
ARQ F P S NT+ + + F AM M+ G D T
Sbjct: 93 ARQLFDEIPQPDTVSYNTLISGYADARETFA----------AMVLFKRMRKLGFEVDGFT 142
Query: 77 YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136
+ LI C R V+ K +H +SGGF+ + + N + + K LL EA +F M
Sbjct: 143 LSGLIAACCDR--VDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMD 200
Query: 137 E-RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC---DSLIILR 192
E R+ VSW +MI AY K KAL L M+ +G + +MFT ++VL A D LI R
Sbjct: 201 ELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGR 260
Query: 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGE---LRNAECVFNEMPTRDLVVWNSIIGGFA 249
Q H +IK GF + V S LID Y+K G + ++E VF E+ + DLVVWN++I G++
Sbjct: 261 QFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYS 320
Query: 250 QNSDV-DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY---DHD 305
N ++ +EA+ +++M+R G D + V AC+ L+ Q+H +K +
Sbjct: 321 MNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNR 380
Query: 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV 365
+ +NNAL+ +Y K G+L+DA VF RM + + +S++ MI G AQ+G+ EAL L++ M
Sbjct: 381 ISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLD 440
Query: 366 SRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ 425
S I PN IT V VL AC+H G V++G +F +MK+ + I+P EHYSCMIDLLGRAGKL+
Sbjct: 441 SGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLE 500
Query: 426 EAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
EA + I MPY+P +V W ALLGAC+ H+N LA AA +++ + P Y++L+N+YA
Sbjct: 501 EAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYA 560
Query: 486 NSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQ 545
+++KW+E+A VRK+MR + I K+PGCSWIEV K+ H F D SHP I ++N++L+ +++
Sbjct: 561 DARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMK 620
Query: 546 KLVGVGYAPDTNYVLQDLEGEQKEDS---IQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
K+ VGY D + + + + D + +HSEKLA+ FGLMS G+ + + KNLRI
Sbjct: 621 KMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRI 680
Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
CGDCH K + + + I++RD +R+H F+DG CSCGDYW
Sbjct: 681 CGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 237/664 (35%), Positives = 380/664 (57%), Gaps = 51/664 (7%)
Query: 21 FSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAEL 80
F +PPV + ++ R F Q +A+ + M+ G D + +
Sbjct: 62 FKTLKSPPVLAWKSVIRC----------FTDQSLFSKALASFVEMRASGRCPDHNVFPSV 111
Query: 81 IKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF----------SLLEE--- 127
+K C + + VH ++ G + + + N L+NM+ K ++ +E
Sbjct: 112 LKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQ 171
Query: 128 -----------------------AQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLI 164
+ +F+ MP ++VVS+ T+I+ Y + M + AL ++
Sbjct: 172 RTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVR 231
Query: 165 FMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLG 221
M ++P+ FT S+VL + + +++H +I+ G +SDV++ S+L+D+YAK
Sbjct: 232 EMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSA 291
Query: 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281
+ ++E VF+ + RD + WNS++ G+ QN +EAL L+++M A +SV+
Sbjct: 292 RIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIP 351
Query: 282 ACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339
AC LA L LG Q+H +VL+ + ++ + +AL+DMY KCG+++ A +F RM D +S
Sbjct: 352 ACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS 411
Query: 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399
W+ +I G A +G+ EA+ LFE MK +KPN + V VL ACSH G V++ W +F SM
Sbjct: 412 WTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMT 471
Query: 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLA 459
K YG++ EHY+ + DLLGRAGKL+EA I +M EP W LL +C VH+N +LA
Sbjct: 472 KVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELA 531
Query: 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQ 519
A+KI +D ++ G Y+L+ N+YA++ +W E+A++R MR +G+ K+P CSWIE+ +
Sbjct: 532 EKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNK 591
Query: 520 IHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKL 579
H F D SHP +DKIN+ LK +++++ GY DT+ VL D++ E K + + HSE+L
Sbjct: 592 THGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERL 651
Query: 580 AIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSC 639
A+ FG+++ G TIR+ KN+RIC DCH K +K+ + I++RD R+HHF GNCSC
Sbjct: 652 AVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSC 711
Query: 640 GDYW 643
GDYW
Sbjct: 712 GDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 464 bits (1195), Expect = e-130, Method: Compositional matrix adjust.
Identities = 232/591 (39%), Positives = 366/591 (61%), Gaps = 30/591 (5%)
Query: 75 VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV-----------------NILLN 117
V +++ + C+ + E LV + L GGF + +V N ++
Sbjct: 199 VQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIIT 258
Query: 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT 177
+ + ++EA+ LFD+ P ++V +WT M+S Y +M ++A EL M N +
Sbjct: 259 GYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEVS 314
Query: 178 YSAVLRA---CDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234
++A+L + + + ++L V +V + +I YA+ G++ A+ +F++MP
Sbjct: 315 WNAMLAGYVQGERMEMAKEL----FDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP 370
Query: 235 TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQ 294
RD V W ++I G++Q+ EAL L+ +M+R G ++S+ +S L C + LELG Q
Sbjct: 371 KRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQ 430
Query: 295 VHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY 352
+H ++K Y+ + NALL MYCKCGS+E+A +F M KD++SW+TMI+G +++G+
Sbjct: 431 LHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGF 490
Query: 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412
+ AL+ FESMK +KP+ T+V VL ACSH G V+ G +F +M + YG+ P +HY+
Sbjct: 491 GEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYA 550
Query: 413 CMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
CM+DLLGRAG L++A L+ MP+EPDA W LLGA +VH NT+LA AA KI ++P+
Sbjct: 551 CMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPE 610
Query: 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQ 532
+ G Y+LLSN+YA+S +W +V ++R MR +G+ K PG SWIE+ + H F+V D HP+
Sbjct: 611 NSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPE 670
Query: 533 IDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGK 592
D+I L+ L ++ GY T+ VL D+E E+KE ++YHSE+LA+ +G+M ++ G+
Sbjct: 671 KDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGR 730
Query: 593 TIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
IR+ KNLR+C DCH K A++ + I++RD R+HHF+DG+CSCGDYW
Sbjct: 731 PIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 643 | ||||||
| 225428334 | 623 | PREDICTED: pentatricopeptide repeat-cont | 0.968 | 1.0 | 0.716 | 0.0 | |
| 449444429 | 586 | PREDICTED: pentatricopeptide repeat-cont | 0.909 | 0.998 | 0.749 | 0.0 | |
| 15227724 | 630 | pentatricopeptide repeat-containing prot | 0.958 | 0.977 | 0.699 | 0.0 | |
| 28392910 | 630 | putative selenium-binding protein [Arabi | 0.958 | 0.977 | 0.697 | 0.0 | |
| 356510758 | 854 | PREDICTED: pentatricopeptide repeat-cont | 0.989 | 0.744 | 0.682 | 0.0 | |
| 224131918 | 534 | predicted protein [Populus trichocarpa] | 0.808 | 0.973 | 0.779 | 0.0 | |
| 297814704 | 579 | pentatricopeptide repeat-containing prot | 0.869 | 0.965 | 0.711 | 0.0 | |
| 242079983 | 650 | hypothetical protein SORBIDRAFT_07g02756 | 0.930 | 0.92 | 0.568 | 0.0 | |
| 414869441 | 639 | TPA: hypothetical protein ZEAMMB73_18133 | 0.934 | 0.940 | 0.563 | 0.0 | |
| 357141866 | 642 | PREDICTED: pentatricopeptide repeat-cont | 0.936 | 0.937 | 0.561 | 0.0 |
| >gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 973 bits (2515), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/641 (71%), Positives = 544/641 (84%), Gaps = 18/641 (2%)
Query: 3 LKAVSKLKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAM 62
+KA+SKLK KP + + S L+++F FC+Q DL RAM+AM
Sbjct: 1 MKAISKLKGMKPPLR-----------------YVADPSPLVNEFANFCHQWDLHRAMRAM 43
Query: 63 HAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF 122
AM+ HGV AD++TY+ELIKCC AR AV+E K VH H+ G+EP+ F+VN LLNM+VKF
Sbjct: 44 DAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKF 103
Query: 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182
+LLEEA+ LFD+MPERNVVSWTTMISAY + K+NDKAL+ LI M REGVRPNMFTYS+VL
Sbjct: 104 NLLEEAEDLFDEMPERNVVSWTTMISAYSN-KLNDKALKCLILMFREGVRPNMFTYSSVL 162
Query: 183 RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWN 242
RACD L LRQLHCGIIK G ESDVFVRSALID+Y+K +L NA VF+EMPTRDLVVWN
Sbjct: 163 RACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWN 222
Query: 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKY 302
SIIGGFAQNSD +EALNL+KRMKRAGF ADQ+TLTSVLRACTGLALLELG QVHVHVLK+
Sbjct: 223 SIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKF 282
Query: 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362
D DLILNNAL+DMYCKCGSLEDA S FSRM++KDVISWSTM++GLAQNGYS++AL+LFES
Sbjct: 283 DQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFES 342
Query: 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422
MK S +PNYIT++GVLFACSHAG VE GW +F+SMKK +G+DPGREHY C+IDLLGRAG
Sbjct: 343 MKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAG 402
Query: 423 KLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482
+L EAVKLIHEM EPD+VTWR LLGAC+VHRN DLAI AAKKI+ L+P+D GTYILLSN
Sbjct: 403 RLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSN 462
Query: 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKH 542
IYAN+Q+W++VAEVRKTM RGI K PGCSWIEV+KQIH F + D+SHP+I++I + L
Sbjct: 463 IYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLND 522
Query: 543 LIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRI 602
LI++++GVGY PDTN+VLQDLEGEQKEDS++YHSEKLAI+FGLM+L++ KT+RIRKNLRI
Sbjct: 523 LIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRI 582
Query: 603 CGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
CGDCH FAK+ ++ME+++IVIRDPIRYHHFQDG CSCGDYW
Sbjct: 583 CGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Cucumis sativus] gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/586 (74%), Positives = 508/586 (86%), Gaps = 1/586 (0%)
Query: 59 MKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118
MKAM AM + + AD++TY+ELIKCCL R AV++A+LVH HV S G+EP+TFL+N L+NM
Sbjct: 1 MKAMEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINM 60
Query: 119 HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTY 178
+VKF LL+EA+ LFD+MP+RNVVSWTTMISAY ++ +N KAL+ LI MLREGVRPNM+TY
Sbjct: 61 YVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTY 120
Query: 179 SAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL 238
S+VLRACD L+ LRQLH I+KVG ESDVFVRSALID Y+KLGE +A VFNEM T DL
Sbjct: 121 SSVLRACDGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDL 180
Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298
VVWNSIIGGFAQNSD DE L+LYKRMKRA F ADQSTLTSVLRACTGLALLELG QVHVH
Sbjct: 181 VVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVH 240
Query: 299 VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI-QKDVISWSTMISGLAQNGYSQEAL 357
VLKYD DLILNNALLDMYCKCGSLEDA +F+RM+ +KDVISWSTMI+GLAQNG+S +AL
Sbjct: 241 VLKYDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADAL 300
Query: 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417
KLFE+MK KPNYITI+GVLFACSHAG V DGW +F+SMK+ +GIDPGREHY C+IDL
Sbjct: 301 KLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDL 360
Query: 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477
LGRAGKL EAVKLIHEM +EPDAVTWR LLGAC+VH+N DLAI AAK+IL LDP D GTY
Sbjct: 361 LGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTY 420
Query: 478 ILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKIN 537
ILLSNIYANSQKW++VAEVR+ MR RG+ K+PGCSWIEV+KQ+HAF + D+SHP+I++I
Sbjct: 421 ILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIK 480
Query: 538 KHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIR 597
+ L LIQ+L+ +GY PDTN+VLQDLEGEQ EDS+QYHSEKLAIVFGLMSL KTI IR
Sbjct: 481 RELSQLIQRLMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIR 540
Query: 598 KNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
KNLRICGDCH FAKL +++EN+ IVIRDPIRYHHF+ G CSCGDYW
Sbjct: 541 KNLRICGDCHIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g03880, mitochondrial; Flags: Precursor gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana] gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/618 (69%), Positives = 511/618 (82%), Gaps = 2/618 (0%)
Query: 28 PVAS--CNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCL 85
PV + C+ + + + LL +FTR CYQRDLPRAMKAM ++Q HG+ ADS TY+ELIKCC+
Sbjct: 13 PVVTLRCSYSSTDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCI 72
Query: 86 ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTT 145
+ AV E L+ H+ G P FLVN+L+NM+VKF+LL +A LFDQMP+RNV+SWTT
Sbjct: 73 SNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTT 132
Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES 205
MISAY K++ KALELL+ MLR+ VRPN++TYS+VLR+C+ + +R LHCGIIK G ES
Sbjct: 133 MISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLES 192
Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
DVFVRSALID++AKLGE +A VF+EM T D +VWNSIIGGFAQNS D AL L+KRMK
Sbjct: 193 DVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK 252
Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDA 325
RAGF A+Q+TLTSVLRACTGLALLELG Q HVH++KYD DLILNNAL+DMYCKCGSLEDA
Sbjct: 253 RAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDA 312
Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
+ VF++M ++DVI+WSTMISGLAQNGYSQEALKLFE MK S KPNYITIVGVLFACSHA
Sbjct: 313 LRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHA 372
Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
G +EDGW +F+SMKK YGIDP REHY CMIDLLG+AGKL +AVKL++EM EPDAVTWR
Sbjct: 373 GLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 432
Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
LLGAC+V RN LA AAKK++ LDP+D GTY LLSNIYANSQKWD V E+R MR RGI
Sbjct: 433 LLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGI 492
Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
KEPGCSWIEVNKQIHAF + D+SHPQI +++K L LI +L G+GY P+TN+VLQDLEG
Sbjct: 493 KKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEG 552
Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
EQ EDS+++HSEKLA+ FGLM+L K IRIRKNLRICGDCH F KL +K+E ++IVIRD
Sbjct: 553 EQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRD 612
Query: 626 PIRYHHFQDGNCSCGDYW 643
PIRYHHFQDG CSCGDYW
Sbjct: 613 PIRYHHFQDGKCSCGDYW 630
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/618 (69%), Positives = 510/618 (82%), Gaps = 2/618 (0%)
Query: 28 PVAS--CNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCL 85
PV + C+ + + + LL +FTR CYQRDLPRAMKAM ++Q HG+ ADS TY+ELIKCC+
Sbjct: 13 PVVTLRCSYSSTDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCI 72
Query: 86 ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTT 145
+ AV E L+ H+ G P FLVN+L+NM+VKF+LL +A LFDQMP+RNV+SWTT
Sbjct: 73 SNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTT 132
Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES 205
MISAY K++ KALELL+ MLR+ VRPN++TYS+VLR+C+ + +R LHCGIIK G ES
Sbjct: 133 MISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLES 192
Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
DVFVRSALID++AKLGE +A VF+EM T D +VWNSIIGGFAQNS D AL L+KRMK
Sbjct: 193 DVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK 252
Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDA 325
RAGF A+Q+TLTSVLRACTGLALLELG Q HVH++KYD DLILNNAL+DMYCKCGSLEDA
Sbjct: 253 RAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDA 312
Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
+ VF++M ++DVI+WSTMISGLAQNGYSQEALKLFE MK S KPNYITIVGVLFACSHA
Sbjct: 313 LRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHA 372
Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
G +EDGW +F+SMKK YGIDP REHY CMIDLLG+AGKL +AVKL++EM EPDAVTWR
Sbjct: 373 GLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 432
Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
LLGAC+V RN LA AAKK++ LDP+D GTY LLSNIYANSQKWD V E+R MR RGI
Sbjct: 433 LLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGI 492
Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
KEPGCSWIEVNKQIHAF + D+SHPQI +++K L LI +L G+GY P+TN+VLQDLEG
Sbjct: 493 KKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEG 552
Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
EQ EDS+++HSEKLA+ FGLM+L K IRIRKNLRICGDCH F KL +K+E ++IVIR
Sbjct: 553 EQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRG 612
Query: 626 PIRYHHFQDGNCSCGDYW 643
PIRYHHFQDG CSCGDYW
Sbjct: 613 PIRYHHFQDGKCSCGDYW 630
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/642 (68%), Positives = 519/642 (80%), Gaps = 6/642 (0%)
Query: 3 LKAVSK-LKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKA 61
++ VSK L+ +P+S +R S ++ + S + + + SLL+ CY+RDLP AM
Sbjct: 218 MRGVSKHLQLLRPTS-SRCCSYSVNSSLVSPHYVPPETESLLNH----CYRRDLPSAMHV 272
Query: 62 MHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121
+ +M+ GV ADS+TY+ELIKCCLA AV E K VH H+ S G+ P+TFL NIL+NM+VK
Sbjct: 273 LDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVK 332
Query: 122 FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
F+LLEEAQVLFD+MPERNVVSWTTMISAY +A++ND+A+ LL FM R+GV PNMFT+S+V
Sbjct: 333 FNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSV 392
Query: 182 LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
LRAC+ L L+QLH I+KVG ESDVFVRSALID+Y+K+GEL A VF EM T D VVW
Sbjct: 393 LRACERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVW 452
Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
NSII FAQ+SD DEAL+LYK M+R GF ADQSTLTSVLRACT L+LLELG Q HVHVLK
Sbjct: 453 NSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK 512
Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
+D DLILNNALLDMYCKCGSLEDA +F+RM +KDVISWSTMI+GLAQNG+S EAL LFE
Sbjct: 513 FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFE 572
Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
SMKV KPN+ITI+GVLFACSHAG V +GW +F+SM YGIDPGREHY CM+DLLGRA
Sbjct: 573 SMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRA 632
Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
KL + VKLIHEM EPD VTWR LL AC+ +N DLA AAK+IL LDPQD G Y+LLS
Sbjct: 633 EKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLS 692
Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
NIYA S++W++VAEVR+TM+ RGI KEPGCSWIEVNKQIHAF + D SHPQID+IN+ L
Sbjct: 693 NIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLN 752
Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
I +L G GY PDTN+VLQDLEGEQ+EDS++YHSEKLAIVFG+MS + KTIRI KNL+
Sbjct: 753 QFICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLK 812
Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
ICGDCH FAKL A++E + IVIRDPIRYHHFQDG CSCGDYW
Sbjct: 813 ICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa] gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/534 (77%), Positives = 469/534 (87%)
Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE 169
FL+NIL+NM+VKF LL +AQ +FD+MP+RNVVSWTTMISAY AK+NDKALE L+ MLRE
Sbjct: 1 FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60
Query: 170 GVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229
GVRPNMFTYS+VLRACD L LRQLHC IIK+G +SDVFVRSALID+Y++ GEL NA V
Sbjct: 61 GVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120
Query: 230 FNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289
F+EM T DLVVW+SII GFAQNSD DEAL L+KRMKRAGF A Q+TLTSVLRACTGLALL
Sbjct: 121 FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALL 180
Query: 290 ELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
ELG QVHVHVLKYD DLILNNALLDMYCKCGSLEDA +VF RM++KDVISWSTMI+GLAQ
Sbjct: 181 ELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQ 240
Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
NGYS+EALKLFESMKV IKPNY+TIVGVLFACSHAG VE+G +F SMK+ +GIDPGRE
Sbjct: 241 NGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGRE 300
Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
HY CMIDLLGRAG+L EAV LI+EM EPDAVTWRALL AC+VHRN D+AI AAK+IL L
Sbjct: 301 HYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRL 360
Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
DPQD GTY+LLSNIYAN+Q+W++VAEVR+TM RGI KEPGCSWIEV+KQIHAF + D S
Sbjct: 361 DPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRS 420
Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
HPQI +IN L LI KL+GVGY PDTN+VLQDLEGEQ +DS++YHSEKLAIVFGLMSL
Sbjct: 421 HPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMSLP 480
Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
+G+TIRIRKNLRICGDCH F KL AKME + IVIRDP+RYHHFQDG CSCGD+W
Sbjct: 481 RGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/579 (71%), Positives = 484/579 (83%)
Query: 62 MHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121
M ++Q HG+ ADS TY+ELIKCCL+ AV E L+ H+ G +P FLVN+L+NM+VK
Sbjct: 1 MDSLQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVK 60
Query: 122 FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181
F+LL +A LFDQMP+RNV+SWTTMISAY K++ KALELL+ MLR+GVRPN++TYS+V
Sbjct: 61 FNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSV 120
Query: 182 LRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
LRAC+ + +R LHCGIIK G ESDV+VRSALID++AKLGE +A VF+EM T D +VW
Sbjct: 121 LRACNGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVW 180
Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
NSIIGGFAQNS D AL L+KRMKRAGF A+Q+TLTSVLRACTGLALLELG Q HVH++K
Sbjct: 181 NSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK 240
Query: 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFE 361
YD DLILNNAL+DMYCKCGSLEDA VF++M ++DVI+WSTMISGLAQNGYSQEALKLFE
Sbjct: 241 YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFE 300
Query: 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421
MK S KPNYITIVGVLFACSHAG +EDGW +F+SMKK YGI+PGREHY CMIDLLG+A
Sbjct: 301 LMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKA 360
Query: 422 GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481
GKL +AVKL++EM EPDAVTWR LLGAC+V RN LA AAKK++ LDP+D GTY +LS
Sbjct: 361 GKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLS 420
Query: 482 NIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLK 541
NIYANSQKWD V E+RK MR GI KEPGCSWIEVNKQIHAF + D SHPQI ++NK L
Sbjct: 421 NIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLN 480
Query: 542 HLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLR 601
LI +L+G+GY P+TN+VLQDLEGEQ EDS+++HSEKLA+ FGLM+L K IRIRKNLR
Sbjct: 481 QLIHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLR 540
Query: 602 ICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCG 640
ICGDCH F KL +K+EN+ IVIRDPIRYHHFQDG CSCG
Sbjct: 541 ICGDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSCG 579
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor] gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/607 (56%), Positives = 438/607 (72%), Gaps = 9/607 (1%)
Query: 46 FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHV----- 100
F+R C + P A+ + + G+RAD V+ L+K C+ + +L+H HV
Sbjct: 44 FSRLCVEGPFPAALALLPDLAAAGLRADPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQ 103
Query: 101 ---LSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK-MN 156
SGG F+ N L++M+ KF LL++A LFD+MPERNVV+WTT+++A +A
Sbjct: 104 LSHYSGGAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRK 163
Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDI 216
++AL L+ M R+GV PN +T+S+VL AC + +L LH +KVG +SDVFVRS+LID
Sbjct: 164 EEALRFLVAMWRDGVAPNAYTFSSVLGACGTPGVLAALHASTVKVGLDSDVFVRSSLIDA 223
Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
Y KLG+L VF+EM TRDLVVWNSII GFAQ+ D A+ L+ RMK AGF+A+Q TL
Sbjct: 224 YMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTL 283
Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD 336
TSVLRACTG+ +LE G QVH HVLKY+ DLIL+NALLDMYCKCGSLEDA ++F RM Q+D
Sbjct: 284 TSVLRACTGMVMLEAGRQVHAHVLKYERDLILHNALLDMYCKCGSLEDAEALFHRMPQRD 343
Query: 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
VISWSTMISGLAQNG S EAL++F+ MK + PN IT+VGVLFACSHAG VEDGW +F+
Sbjct: 344 VISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFR 403
Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
SMKK +GI P REH++CM+DLLGRAGKL EAV+ I +M EPDAV WR LLGAC++H++
Sbjct: 404 SMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSG 463
Query: 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV 516
+LA AA++IL L+P D G +LLSN YA+ ++W + + K MR RG+ KEPG SWIE+
Sbjct: 464 NLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIEL 523
Query: 517 NKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHS 576
K +H F D SHP D I + L LI ++ +GY P T +VLQDL EQKED ++YHS
Sbjct: 524 EKHVHVFIAGDLSHPCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYHS 583
Query: 577 EKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
EK+AI FG M GK IRI KNLRICGDCH FAKL +K E + I+IRDP+R+HHFQDG
Sbjct: 584 EKMAIAFGTMHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGA 643
Query: 637 CSCGDYW 643
CSCGDYW
Sbjct: 644 CSCGDYW 650
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/607 (56%), Positives = 437/607 (71%), Gaps = 6/607 (0%)
Query: 43 LDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLS 102
L F+R C + LP A+ + + G+RAD V+ L+K C+ + +L+H HV +
Sbjct: 33 LTTFSRLCVEGPLPAALALLSELAAAGLRADPVSLTRLVKLCVRHGTADHGRLIHRHVEA 92
Query: 103 GGFEPET-----FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAK-MN 156
G P F+ N L +M+ KF LL++A +FD MP RNVV+WTT+++A A
Sbjct: 93 HGPLPHDGAGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRK 152
Query: 157 DKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDI 216
+AL L+ M R+GV PN +T+S+VL AC + +L +H +K G +SDVFVRS+LID
Sbjct: 153 QEALRFLVAMRRDGVAPNAYTFSSVLGACTTPGMLTAVHASTVKAGLDSDVFVRSSLIDA 212
Query: 217 YAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276
Y KLG+L VF+EM TRDLVVWNSII GFAQ+ D A+ L+ RMK AGF+++Q TL
Sbjct: 213 YVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTL 272
Query: 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD 336
TSVLRACTG+ +LE G QVH HVLKYD DLIL+NALLDMYCKCGSLEDA ++F RM Q+D
Sbjct: 273 TSVLRACTGMVMLEAGRQVHAHVLKYDRDLILHNALLDMYCKCGSLEDADALFHRMPQRD 332
Query: 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
VISWSTM+SGLAQNG S EAL++F+ MK + PN++T+VGVLFACSHAG VEDGW++F+
Sbjct: 333 VISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFR 392
Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456
SMK+ +GI P REH++CM+DLLGRAGKL EAV+ IH M EPD+V WR LLGAC++H+N
Sbjct: 393 SMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNA 452
Query: 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEV 516
LA AA++IL L+P D G +LLSN YA+ ++W + + K MR RG+ KEPG SWIE+
Sbjct: 453 SLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIEL 512
Query: 517 NKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHS 576
K++H F D SHP D I + L LI ++ +GY P T +VLQDL EQKED ++YHS
Sbjct: 513 EKRVHVFIAGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHS 572
Query: 577 EKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGN 636
EK+AIVFG M GK IRI KNLRICGDCH FAKL +K E + IVIRDP+R+HHFQDG
Sbjct: 573 EKMAIVFGTMHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGA 632
Query: 637 CSCGDYW 643
CSCGDYW
Sbjct: 633 CSCGDYW 639
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/609 (56%), Positives = 432/609 (70%), Gaps = 7/609 (1%)
Query: 42 LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHV- 100
L+ F+R C A+ + + GVRAD V+ LIK C+ V + + +H HV
Sbjct: 34 LVSIFSRLCLDGPFTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVS 93
Query: 101 -----LSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKM 155
G F+ N L++M+ KF +L++A LF MP+RNVVSWTT+++A +A
Sbjct: 94 LCAHGGGGATHGSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPG 153
Query: 156 NDK-ALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALI 214
K AL L+ M R+GV N +T+S+VL AC + +L +H IIKVG +SDVFVRS+LI
Sbjct: 154 RKKEALRFLVEMRRDGVAANSYTFSSVLGACGTPGVLAAMHADIIKVGLDSDVFVRSSLI 213
Query: 215 DIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQS 274
D Y KLG+L + VF+EM T DLVVWNSII GFAQ+ D A+ L+ RMK +GF A+Q
Sbjct: 214 DAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQG 273
Query: 275 TLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ 334
TLTSVLRACTG+ +LE+G QVH HVLKYD DLIL+NALLDMYCKCG L DA ++FSRM
Sbjct: 274 TLTSVLRACTGMVMLEVGRQVHAHVLKYDRDLILHNALLDMYCKCGCLLDADALFSRMHD 333
Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
+DVISWSTMISGLAQNG S EALK+F+ MK PN IT+VGVLFACSHAG VEDGW++
Sbjct: 334 RDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHY 393
Query: 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR 454
F+SM K +GI P REH +CM+DLLGRAGKL EA+K I EM +EPD+V WR LLGAC++H+
Sbjct: 394 FRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHK 453
Query: 455 NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWI 514
N LA AA +IL L+P+D G ILLSNIYA+ ++W + KTMR +G+ KEPG SWI
Sbjct: 454 NATLASYAATEILKLEPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWI 513
Query: 515 EVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQY 574
E+ K +H F + SHP D+I + L LI++ +GY P T +VLQDL EQKED ++Y
Sbjct: 514 ELGKLVHVFIAGELSHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKY 573
Query: 575 HSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQD 634
HSEKLAI FG M+ +GK +RI KNLRICGDCH FAKL +K E + I+IRDP+R+HHFQ
Sbjct: 574 HSEKLAIAFGTMNSMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQH 633
Query: 635 GNCSCGDYW 643
G CSCGDYW
Sbjct: 634 GVCSCGDYW 642
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 643 | ||||||
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.958 | 0.977 | 0.699 | 1.1e-240 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.917 | 0.554 | 0.384 | 1.7e-123 | |
| TAIR|locus:2097365 | 721 | AT3G49710 "AT3G49710" [Arabido | 0.916 | 0.816 | 0.424 | 2.7e-123 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.914 | 0.677 | 0.405 | 1.9e-122 | |
| TAIR|locus:2091546 | 628 | AT3G13770 [Arabidopsis thalian | 0.912 | 0.934 | 0.395 | 1.9e-122 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.900 | 0.664 | 0.382 | 2.2e-121 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.902 | 0.585 | 0.382 | 2.9e-119 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.984 | 0.960 | 0.373 | 1.3e-118 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.892 | 0.964 | 0.398 | 3.3e-118 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.900 | 0.701 | 0.382 | 4.2e-118 |
| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2320 (821.7 bits), Expect = 1.1e-240, P = 1.1e-240
Identities = 432/618 (69%), Positives = 511/618 (82%)
Query: 28 PVAS--CNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCL 85
PV + C+ + + + LL +FTR CYQRDLPRAMKAM ++Q HG+ ADS TY+ELIKCC+
Sbjct: 13 PVVTLRCSYSSTDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCI 72
Query: 86 ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTT 145
+ AV E L+ H+ G P FLVN+L+NM+VKF+LL +A LFDQMP+RNV+SWTT
Sbjct: 73 SNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTT 132
Query: 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES 205
MISAY K++ KALELL+ MLR+ VRPN++TYS+VLR+C+ + +R LHCGIIK G ES
Sbjct: 133 MISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLES 192
Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
DVFVRSALID++AKLGE +A VF+EM T D +VWNSIIGGFAQNS D AL L+KRMK
Sbjct: 193 DVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK 252
Query: 266 RAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDA 325
RAGF A+Q+TLTSVLRACTGLALLELG Q HVH++KYD DLILNNAL+DMYCKCGSLEDA
Sbjct: 253 RAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDA 312
Query: 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385
+ VF++M ++DVI+WSTMISGLAQNGYSQEALKLFE MK S KPNYITIVGVLFACSHA
Sbjct: 313 LRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHA 372
Query: 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445
G +EDGW +F+SMKK YGIDP REHY CMIDLLG+AGKL +AVKL++EM EPDAVTWR
Sbjct: 373 GLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 432
Query: 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGI 505
LLGAC+V RN LA AAKK++ LDP+D GTY LLSNIYANSQKWD V E+R MR RGI
Sbjct: 433 LLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGI 492
Query: 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEG 565
KEPGCSWIEVNKQIHAF + D+SHPQI +++K L LI +L G+GY P+TN+VLQDLEG
Sbjct: 493 KKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEG 552
Query: 566 EQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRD 625
EQ EDS+++HSEKLA+ FGLM+L K IRIRKNLRICGDCH F KL +K+E ++IVIRD
Sbjct: 553 EQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRD 612
Query: 626 PIRYHHFQDGNCSCGDYW 643
PIRYHHFQDG CSCGDYW
Sbjct: 613 PIRYHHFQDGKCSCGDYW 630
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
Identities = 229/595 (38%), Positives = 358/595 (60%)
Query: 54 DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
DL + + MQ + + TY ++K C+ +E + +H+ ++ F+ ++ +
Sbjct: 470 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCS 529
Query: 114 ILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP 173
+L++M+ K L+ A + + ++VVSWTTMI+ Y +DKAL ML G+R
Sbjct: 530 VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 589
Query: 174 NMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVF 230
+ + + AC L L+ Q+H GF SD+ ++AL+ +Y++ G++ + F
Sbjct: 590 DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF 649
Query: 231 NEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290
+ D + WN+++ GF Q+ + +EAL ++ RM R G + T S ++A + A ++
Sbjct: 650 EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMK 709
Query: 291 LGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA 348
G QVH + K YD + + NAL+ MY KCGS+ DA F + K+ +SW+ +I+ +
Sbjct: 710 QGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYS 769
Query: 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408
++G+ EAL F+ M S ++PN++T+VGVL ACSH G V+ G +F+SM YG+ P
Sbjct: 770 KHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKP 829
Query: 409 EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468
EHY C++D+L RAG L A + I EMP +PDA+ WR LL AC VH+N ++ AA +L
Sbjct: 830 EHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLE 889
Query: 469 LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADS 528
L+P+D TY+LLSN+YA S+KWD R+ M+ +G+ KEPG SWIEV IH+F V D
Sbjct: 890 LEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQ 949
Query: 529 SHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSL 588
+HP D+I+++ + L ++ +GY D +L +L+ EQK+ I HSEKLAI FGL+SL
Sbjct: 950 NHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSL 1009
Query: 589 TQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
I + KNLR+C DCH + K +K+ N+ I++RD R+HHF+ G CSC DYW
Sbjct: 1010 PATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
|
|
| TAIR|locus:2097365 AT3G49710 "AT3G49710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1212 (431.7 bits), Expect = 2.7e-123, P = 2.7e-123
Identities = 257/605 (42%), Positives = 376/605 (62%)
Query: 53 RDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112
R+ AM M+ G D T + LI C R V+ K +H +SGGF+ + +
Sbjct: 119 RETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDR--VDLIKQLHCFSVSGGFDSYSSVN 176
Query: 113 NILLNMHVKFSLLEEAQVLFDQMPE-RNVVSWTTMISAYCDAKMNDKALELLIFMLREGV 171
N + + K LL EA +F M E R+ VSW +MI AY K KAL L M+ +G
Sbjct: 177 NAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGF 236
Query: 172 RPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGE---LRN 225
+ +MFT ++VL A SL L RQ H +IK GF + V S LID Y+K G + +
Sbjct: 237 KIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYD 296
Query: 226 AECVFNEMPTRDLVVWNSIIGGFAQNSDV-DEALNLYKRMKRAGFAADQSTLTSVLRACT 284
+E VF E+ + DLVVWN++I G++ N ++ +EA+ +++M+R G D + V AC+
Sbjct: 297 SEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACS 356
Query: 285 GLALLELGTQVHVHVLKY---DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWS 341
L+ Q+H +K + + +NNAL+ +Y K G+L+DA VF RM + + +S++
Sbjct: 357 NLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFN 416
Query: 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401
MI G AQ+G+ EAL L++ M S I PN IT V VL AC+H G V++G +F +MK+
Sbjct: 417 CMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKET 476
Query: 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAIC 461
+ I+P EHYSCMIDLLGRAGKL+EA + I MPY+P +V W ALLGAC+ H+N LA
Sbjct: 477 FKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAER 536
Query: 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIH 521
AA +++ + P Y++L+N+YA+++KW+E+A VRK+MR + I K+PGCSWIEV K+ H
Sbjct: 537 AANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKH 596
Query: 522 AFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVL--QDLEGEQKEDS-IQYHSEK 578
F D SHP I ++N++L+ +++K+ VGY D + + +D GE E+ + +HSEK
Sbjct: 597 VFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEK 656
Query: 579 LAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCS 638
LA+ FGLMS G+ + + KNLRICGDCH K + + + I++RD +R+H F+DG CS
Sbjct: 657 LAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCS 716
Query: 639 CGDYW 643
CGDYW
Sbjct: 717 CGDYW 721
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
Identities = 241/595 (40%), Positives = 367/595 (61%)
Query: 54 DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113
DL A+ ++M+ + VR ++A +IK C + + +H V+ GF + +
Sbjct: 276 DL-EALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRT 334
Query: 114 ILLNMHVKFSLLEEAQVLFDQMP-ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR 172
L+ + K + + +A LF ++ NVVSWT MIS + ++A++L M R+GVR
Sbjct: 335 ALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVR 394
Query: 173 PNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
PN FTYS +L A +I ++H ++K +E V +AL+D Y KLG++ A VF+
Sbjct: 395 PNEFTYSVILTALP-VISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSG 453
Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL-ALLEL 291
+ +D+V W++++ G+AQ + + A+ ++ + + G ++ T +S+L C A +
Sbjct: 454 IDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQ 513
Query: 292 GTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
G Q H +K D L +++ALL MY K G++E A VF R +KD++SW++MISG AQ
Sbjct: 514 GKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQ 573
Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
+G + +AL +F+ MK ++K + +T +GV AC+HAG VE+G +F M + I P +E
Sbjct: 574 HGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKE 633
Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
H SCM+DL RAG+L++A+K+I MP + WR +L AC+VH+ T+L AA+KI+ +
Sbjct: 634 HNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAM 693
Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
P+D Y+LLSN+YA S W E A+VRK M R + KEPG SWIEV + ++F D S
Sbjct: 694 KPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRS 753
Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
HP D+I L+ L +L +GY PDT+YVLQD++ E KE + HSE+LAI FGL++
Sbjct: 754 HPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATP 813
Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQ-DGNCSCGDYW 643
+G + I KNLR+CGDCH KL AK+E + IV+RD R+HHF DG CSCGD+W
Sbjct: 814 KGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
|
| TAIR|locus:2091546 AT3G13770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
Identities = 235/594 (39%), Positives = 366/594 (61%)
Query: 57 RAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116
R +A+ M G Y L+ CL + A+ + + VH H++ + P T+L LL
Sbjct: 35 RLQEALLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLL 94
Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176
+ K LE+A+ + D+MPE+NVVSWT MIS Y + +AL + M+R +PN F
Sbjct: 95 IFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEF 154
Query: 177 TYSAVLRAC---DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
T++ VL +C L + +Q+H I+K ++S +FV S+L+D+YAK G+++ A +F +
Sbjct: 155 TFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECL 214
Query: 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293
P RD+V +II G+AQ +EAL ++ R+ G + + T S+L A +GLALL+ G
Sbjct: 215 PERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGK 274
Query: 294 QVHVHVLKYDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNG 351
Q H HVL+ + +L N+L+DMY KCG+L A +F M ++ ISW+ M+ G +++G
Sbjct: 275 QAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHG 334
Query: 352 YSQEALKLFESMK-VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF-YGIDPGRE 409
+E L+LF M+ R+KP+ +T++ VL CSH + G N F M YG PG E
Sbjct: 335 LGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTE 394
Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
HY C++D+LGRAG++ EA + I MP +P A +LLGAC+VH + D+ ++++ +
Sbjct: 395 HYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEI 454
Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
+P++ G Y++LSN+YA++ +W +V VR M + +TKEPG SWI+ + +H F+ D +
Sbjct: 455 EPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRT 514
Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
HP+ +++ +K + K+ GY PD + VL D++ EQKE + HSEKLA+ FGL++
Sbjct: 515 HPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATG 574
Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
+G IR+ KNLRIC DCH FAK+ +K+ + + +RD R+H DG CSCGDYW
Sbjct: 575 EGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1194 (425.4 bits), Expect = 2.2e-121, P = 2.2e-121
Identities = 224/585 (38%), Positives = 365/585 (62%)
Query: 65 MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
M G+ D T + C + + VH+ + F E N LL+M+ K
Sbjct: 287 MLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGD 346
Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
L+ A+ +F +M +R+VVS+T+MI+ Y + +A++L M EG+ P+++T +AVL
Sbjct: 347 LDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNC 406
Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
C +L +++H I + D+FV +AL+D+YAK G ++ AE VF+EM +D++ W
Sbjct: 407 CARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISW 466
Query: 242 NSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
N+IIGG+++N +EAL+L+ + + F+ D+ T+ VL AC L+ + G ++H +++
Sbjct: 467 NTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIM 526
Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
+ Y D + N+L+DMY KCG+L A +F + KD++SW+ MI+G +G+ +EA+
Sbjct: 527 RNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIA 586
Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
LF M+ + I+ + I+ V +L+ACSH+G V++GW F M+ I+P EHY+C++D+L
Sbjct: 587 LFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDML 646
Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
R G L +A + I MP PDA W ALL C++H + LA A+K+ L+P++ G Y+
Sbjct: 647 ARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYV 706
Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
L++NIYA ++KW++V +RK + RG+ K PGCSWIE+ +++ F DSS+P+ + I
Sbjct: 707 LMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEA 766
Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
L+ + +++ GY+P T Y L D E +KE+++ HSEKLA+ G++S GK IR+ K
Sbjct: 767 FLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTK 826
Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
NLR+CGDCH AK +K+ + IV+RD R+H F+DG+CSC +W
Sbjct: 827 NLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
Identities = 225/588 (38%), Positives = 359/588 (61%)
Query: 62 MHAMQCHGVRADSVTYAELIKCCLAR-HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHV 120
M ++C G++ D T ++K + + +K VH H + ++F+ L++ +
Sbjct: 405 MQLLRC-GLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYS 463
Query: 121 KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSA 180
+ ++EA++LF++ ++V+W M++ Y + K L+L M ++G R + FT +
Sbjct: 464 RNRCMKEAEILFERH-NFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLAT 522
Query: 181 VLRACDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD 237
V + C L + +Q+H IK G++ D++V S ++D+Y K G++ A+ F+ +P D
Sbjct: 523 VFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPD 582
Query: 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297
V W ++I G +N + + A +++ +M+ G D+ T+ ++ +A + L LE G Q+H
Sbjct: 583 DVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHA 642
Query: 298 HVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355
+ LK + +D + +L+DMY KCGS++DA +F R+ ++ +W+ M+ GLAQ+G +E
Sbjct: 643 NALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKE 702
Query: 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415
L+LF+ MK IKP+ +T +GVL ACSH+G V + + H +SM YGI P EHYSC+
Sbjct: 703 TLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLA 762
Query: 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475
D LGRAG +++A LI M E A +R LL AC+V +T+ A K+L L+P D
Sbjct: 763 DALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSS 822
Query: 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDK 535
Y+LLSN+YA + KWDE+ R M+ + K+PG SWIEV +IH F V D S+ Q +
Sbjct: 823 AYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTEL 882
Query: 536 INKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIR 595
I + +K +I+ + GY P+T++ L D+E E+KE ++ YHSEKLA+ FGL+S IR
Sbjct: 883 IYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIR 942
Query: 596 IRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
+ KNLR+CGDCH K AK+ N+ IV+RD R+H F+DG CSCGDYW
Sbjct: 943 VIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
Identities = 244/654 (37%), Positives = 389/654 (59%)
Query: 5 AVSKLKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHA 64
+VS+L T+ ++ + + V + + NS ++ D R + A +M
Sbjct: 12 SVSRLLHTERHTERQNLTTLFNRYVDKTDVFSWNS--VIADLARSGDSAEALLAFSSMRK 69
Query: 65 MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
+ + R+ ++ IK C + + K H G++ + F+ + L+ M+
Sbjct: 70 LSLYPTRS---SFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGK 126
Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMND-KALELLIFMLREGVRPN--MFTYS-- 179
LE+A+ +FD++P+RN+VSWT+MI Y D N A+ L +L + + MF S
Sbjct: 127 LEDARKVFDEIPKRNIVSWTSMIRGY-DLNGNALDAVSLFKDLLVDENDDDDAMFLDSMG 185
Query: 180 --AVLRACDSLI---ILRQLHCGIIKVGFESDVFVRSALIDIYAKLGE--LRNAECVFNE 232
+V+ AC + + +H +IK GF+ V V + L+D YAK GE + A +F++
Sbjct: 186 LVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQ 245
Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRM-KRAGFAADQSTLTSVLRACTGLALLEL 291
+ +D V +NSI+ +AQ+ +EA +++R+ K + TL++VL A + L +
Sbjct: 246 IVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRI 305
Query: 292 GTQVHVHVLKY--DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349
G +H V++ + D+I+ +++DMYCKCG +E A F RM K+V SW+ MI+G
Sbjct: 306 GKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGM 365
Query: 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409
+G++ +AL+LF +M S ++PNYIT V VL ACSHAG +GW F +MK +G++PG E
Sbjct: 366 HGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLE 425
Query: 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469
HY CM+DLLGRAG LQ+A LI M +PD++ W +LL AC++H+N +LA + ++ L
Sbjct: 426 HYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFEL 485
Query: 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSS 529
D + G Y+LLS+IYA++ +W +V VR M+ RG+ K PG S +E+N ++H F + D
Sbjct: 486 DSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEE 545
Query: 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589
HPQ +KI + L L +KL+ GY +T+ V D++ E+KE +++ HSEKLAI FG+M+
Sbjct: 546 HPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTV 605
Query: 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
G T+ + KNLR+C DCH KL +K+ ++ V+RD R+HHF+DG CSCGDYW
Sbjct: 606 PGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
Identities = 239/599 (39%), Positives = 371/599 (61%)
Query: 55 LPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVE--EAKLVHNHVLSGGFEPETFLV 112
LP K ++ +Q +GV S+T I RH V +A+L H++ F +LV
Sbjct: 12 LPMVEKCINLLQTYGV--SSITKLRQIHAFSIRHGVSISDAEL-GKHLI---F----YLV 61
Query: 113 NILLNMHVKFSLLEEAQVLFDQMPER-NVVSWTTMISAYCDAKMNDKALELLIFMLREG- 170
++ + + A +F ++ + NV W T+I Y + + A L M G
Sbjct: 62 SLPSPPPMSY-----AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGL 116
Query: 171 VRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAE 227
V P+ TY +++A ++ +R +H +I+ GF S ++V+++L+ +YA G++ +A
Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAY 176
Query: 228 CVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287
VF++MP +DLV WNS+I GFA+N +EAL LY M G D T+ S+L AC +
Sbjct: 177 KVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIG 236
Query: 288 LLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMIS 345
L LG +VHV+++K +L +N LLD+Y +CG +E+A ++F M+ K+ +SW+++I
Sbjct: 237 ALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIV 296
Query: 346 GLAQNGYSQEALKLFESMKVSR-IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404
GLA NG+ +EA++LF+ M+ + + P IT VG+L+ACSH G V++G+ +F+ M++ Y I
Sbjct: 297 GLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKI 356
Query: 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAK 464
+P EH+ CM+DLL RAG++++A + I MP +P+ V WR LLGAC VH ++DLA A
Sbjct: 357 EPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARI 416
Query: 465 KILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFN 524
+IL L+P G Y+LLSN+YA+ Q+W +V ++RK M G+ K PG S +EV ++H F
Sbjct: 417 QILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFL 476
Query: 525 VADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFG 584
+ D SHPQ D I LK + +L GY P + V D+E E+KE+++ YHSEK+AI F
Sbjct: 477 MGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFM 536
Query: 585 LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
L+S + I + KNLR+C DCH KL +K+ N+ IV+RD R+HHF++G+CSC DYW
Sbjct: 537 LISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
|
|
| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
Identities = 224/585 (38%), Positives = 355/585 (60%)
Query: 65 MQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124
M+ G + T++ ++K + H + +H ++ GF + + N +L+ + K
Sbjct: 241 MRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDR 300
Query: 125 LEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA 184
+ E ++LFD+MPE + VS+ +IS+Y A + +L M G F ++ +L
Sbjct: 301 VLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSI 360
Query: 185 CDSLIIL---RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241
+L L RQLHC + +S + V ++L+D+YAK AE +F +P R V W
Sbjct: 361 AANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSW 420
Query: 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301
++I G+ Q L L+ +M+ + ADQST +VL+A A L LG Q+H +++
Sbjct: 421 TALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIR 480
Query: 302 YDH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL 359
+ ++ + L+DMY KCGS++DA+ VF M ++ +SW+ +IS A NG + A+
Sbjct: 481 SGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGA 540
Query: 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419
F M S ++P+ ++I+GVL ACSH GFVE G +F++M YGI P ++HY+CM+DLLG
Sbjct: 541 FAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLG 600
Query: 420 RAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP-QDPGTYI 478
R G+ EA KL+ EMP+EPD + W ++L AC++H+N LA AA+K+ +++ +D Y+
Sbjct: 601 RNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYV 660
Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
+SNIYA + +W++V +V+K MR RGI K P SW+EVN +IH F+ D +HP D+I +
Sbjct: 661 SMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVR 720
Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
+ L ++ GY PDT+ V+QD++ + K +S++YHSE+LA+ F L+S +G I + K
Sbjct: 721 KINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMK 780
Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
NLR C DCH KL +K+ + I +RD R+HHF +G CSCGDYW
Sbjct: 781 NLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SI53 | PP147_ARATH | No assigned EC number | 0.6990 | 0.9580 | 0.9777 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 643 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.0 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-162 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-77 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 6e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 9e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 530 bits (1368), Expect = 0.0
Identities = 239/635 (37%), Positives = 374/635 (58%), Gaps = 15/635 (2%)
Query: 14 PSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD 73
+ V+ C+ I + L R +L ++A
Sbjct: 73 SKDARLDDTQIRKSGVSLCSQIEK-----LVACGRHREALELFEILEAGCPF-----TLP 122
Query: 74 SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFD 133
+ TY L++ C+A ++ K V+ HV S GFEP+ +++N +L MHVK +L +A+ LFD
Sbjct: 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182
Query: 134 QMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR- 192
+MPERN+ SW T+I DA +A L M +G T+ +LRA L R
Sbjct: 183 EMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242
Query: 193 --QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQ 250
QLHC ++K G D FV ALID+Y+K G++ +A CVF+ MP + V WNS++ G+A
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLIL 308
+ +EAL LY M+ +G + DQ T + ++R + LALLE Q H +++ + D++
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
N AL+D+Y K G +EDA +VF RM +K++ISW+ +I+G +G +A+++FE M +
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428
PN++T + VL AC ++G E GW F+SM + + I P HY+CMI+LLGR G L EA
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482
Query: 429 KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
+I P++P W ALL AC++H+N +L AA+K+ + P+ Y++L N+Y +S
Sbjct: 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG 542
Query: 489 KWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLV 548
+ E A+V +T++ +G++ P C+WIEV KQ H+F D HPQ +I + L L++++
Sbjct: 543 RQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEIS 602
Query: 549 GVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHT 608
GY + N +L D++ ++++ S +YHSEKLAI FGL++ ++ ++I ++ RIC DCH
Sbjct: 603 EYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHK 662
Query: 609 FAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643
K A + + IV+RD R+HHF+ G CSCGDYW
Sbjct: 663 VIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 485 bits (1251), Expect = e-162
Identities = 229/583 (39%), Positives = 338/583 (57%), Gaps = 8/583 (1%)
Query: 64 AMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123
M+ V D +T +I C + +H +V+ GF + + N L+ M++
Sbjct: 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337
Query: 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLR 183
EA+ +F +M ++ VSWT MIS Y + DKALE M ++ V P+ T ++VL
Sbjct: 338 SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
Query: 184 ACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVV 240
AC L L +LH + G S V V +ALI++Y+K + A VF+ +P +D++
Sbjct: 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVIS 457
Query: 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300
W SII G N+ EAL +++M + TL + L AC + L G ++H HVL
Sbjct: 458 WTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516
Query: 301 K--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALK 358
+ D L NALLD+Y +CG + A + F+ +KDV+SW+ +++G +G A++
Sbjct: 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVE 575
Query: 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418
LF M S + P+ +T + +L ACS +G V G +F SM++ Y I P +HY+C++DLL
Sbjct: 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635
Query: 419 GRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478
GRAGKL EA I++MP PD W ALL AC++HR+ +L AA+ I LDP G YI
Sbjct: 636 GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI 695
Query: 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINK 538
LL N+YA++ KWDEVA VRKTMR G+T +PGCSW+EV ++HAF D SHPQI +IN
Sbjct: 696 LLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINT 755
Query: 539 HLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLTQGKTIRIRK 598
L+ +K+ G A + + ++E K+D HSE+LAI FGL++ G I + K
Sbjct: 756 VLEGFYEKMKASGLAGSESSSMDEIE-VSKDDIFCGHSERLAIAFGLINTVPGMPIWVTK 814
Query: 599 NLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641
NL +C +CH K +K+ + I +RD ++HHF+DG CSCGD
Sbjct: 815 NLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 262 bits (672), Expect = 4e-77
Identities = 151/452 (33%), Positives = 241/452 (53%), Gaps = 19/452 (4%)
Query: 30 ASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHA 89
AS ++ T +S+S L C L +A+K + +MQ V D Y L + C + A
Sbjct: 45 ASSSSSTHDSNSQL---RALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRA 101
Query: 90 VEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISA 149
VEE V + LS L N +L+M V+F L A +F +MPER++ SW ++
Sbjct: 102 VEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGG 161
Query: 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL---RQLHCGIIKVGFESD 206
Y A D+AL L ML GVRP+++T+ VLR C + L R++H +++ GFE D
Sbjct: 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221
Query: 207 VFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266
V V +ALI +Y K G++ +A VF+ MP RD + WN++I G+ +N + E L L+ M+
Sbjct: 222 VDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281
Query: 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLED 324
D T+TSV+ AC L LG ++H +V+K + D+ + N+L+ MY GS +
Sbjct: 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341
Query: 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384
A VFSRM KD +SW+ MISG +NG +AL+ + M+ + P+ ITI VL AC+
Sbjct: 342 AEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401
Query: 385 AGFVEDGWNHFKSMKKFYGIDPGREHY----SCMIDLLGRAGKLQEAVKLIHEMPYEPDA 440
G ++ G + G Y + +I++ + + +A+++ H +P E D
Sbjct: 402 LGDLDVGVKLHE-----LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDV 455
Query: 441 VTWRALL-GACKVHRNTDLAICAAKKILNLDP 471
++W +++ G +R + I + +L L P
Sbjct: 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP 487
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 6e-21
Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 509 PGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQK 568
PGC W E K D SHP + L Q++ G P+T + D++ E+
Sbjct: 1 PGCVWSEGKK----TLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 569 EDSIQY------HSEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIV 622
D+ H+EK A+ +GL T I+ R+CGDCH F + AK + I+
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGL-----LTTRIIKVLKRMCGDCHEFFRYIAKYTGREII 105
Query: 623 IRDPIRYHHF 632
+RDP R+HHF
Sbjct: 106 VRDPSRFHHF 115
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 2e-13
Identities = 91/441 (20%), Positives = 174/441 (39%), Gaps = 63/441 (14%)
Query: 73 DSVTYAELIKCCLARHAVEEA----KLVHNHVLSGGFEPETFLVNILLNM--HVK----- 121
D + +A+ K C + AV+EA KL+ N LS TF N+L+++ +
Sbjct: 405 DKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLS------TF--NMLMSVCASSQDIDGA 456
Query: 122 ---FSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTY 178
L++EA + D +TT+IS + D E+ M+ GV N+ T+
Sbjct: 457 LRVLRLVQEAGLKADCK------LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF 510
Query: 179 SAVLRAC----------DSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228
A++ C + I+R V + D V +ALI + G + A
Sbjct: 511 GALIDGCARAGQVAKAFGAYGIMRSK-----NV--KPDRVVFNALISACGQSGAVDRAFD 563
Query: 229 VFNEMPTR------DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282
V EM D + +++ A VD A +Y+ + T + +
Sbjct: 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623
Query: 283 CTGLALLELGTQVHVHVLKYD--HDLILNNALLDMYCKCGSLEDAMSVFSRM----IQKD 336
C+ + ++ + K D + +AL+D+ G L+ A + I+
Sbjct: 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683
Query: 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFK 396
+S+S+++ + ++AL+L+E +K +++P T+ ++ A +
Sbjct: 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743
Query: 397 SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE---PDAVTWRALLGACKVH 453
MK+ G+ P YS ++ R + L+ + + P+ V R + G C
Sbjct: 744 EMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL-- 800
Query: 454 RNTDLAICAAKKILNLDPQDP 474
R + A + +++ D P
Sbjct: 801 RRFEKACALGEPVVSFDSGRP 821
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 8e-13
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRAC 185
+VV++ T+I YC ++AL+L M + G++PN++TYS ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 4e-09
Identities = 69/347 (19%), Positives = 149/347 (42%), Gaps = 27/347 (7%)
Query: 50 CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPET 109
+D+ A++ + +Q G++AD Y LI C V+ V + +++ G E
Sbjct: 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507
Query: 110 FLVNILLNMHVKFSLLEEAQVLFDQMPERNV----VSWTTMISAYCDAKMNDKALELLIF 165
L++ + + +A + M +NV V + +ISA + D+A ++L
Sbjct: 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAE 567
Query: 166 MLREG--VRPNMFTYSAVLRAC-------DSLIILRQLHCGIIKVGFESDVFVRSALIDI 216
M E + P+ T A+++AC + + + +H IK G V + ++
Sbjct: 568 MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK-GTPE---VYTIAVNS 623
Query: 217 YAKLGELRNAECVFNEMP----TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
++ G+ A ++++M D V +++++ D+D+A + + ++ G
Sbjct: 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683
Query: 273 QSTLTSVLRACTGLALLELGTQVHVHV--LKYDHDLILNNALLDMYCKCGSLEDAMSVFS 330
+ +S++ AC+ + +++ + +K + NAL+ C+ L A+ V S
Sbjct: 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743
Query: 331 RM----IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373
M + + I++S ++ + + L L K IKPN +
Sbjct: 744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 4e-09
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT 374
DV++++T+I G + G +EALKLF MK IKPN T
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 6e-09
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283
D+V +N++I G+ + V+EAL L+ MK+ G + T + ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 68/314 (21%), Positives = 120/314 (38%), Gaps = 58/314 (18%)
Query: 59 MKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFE--PETFLVNILL 116
MKA + H + D +T L+K C V+ AK V+ + + PE + I +
Sbjct: 568 MKA----ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY--TIAV 621
Query: 117 NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCD----AKMNDKALELLIFMLREGVR 172
N + + A ++D M ++ V SA D A DKA E+L ++G++
Sbjct: 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681
Query: 173 PNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE 232
+YS+++ AC + K E ++S KL
Sbjct: 682 LGTVSYSSLMGACSNA--------KNWKKALELYEDIKS------IKL------------ 715
Query: 233 MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292
PT + N++I + + + +AL + MKR G + T + +L A ++G
Sbjct: 716 RPT--VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
Query: 293 TQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV----ISWSTMISGLA 348
+ + D I N ++ C+C + R +K S SG
Sbjct: 774 LDLLSQAKE---DGIKPNLVM---CRC-----ITGLCLRRFEKACALGEPVVS-FDSGRP 821
Query: 349 Q--NGYSQEALKLF 360
Q N ++ AL ++
Sbjct: 822 QIENKWTSWALMVY 835
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQK----DVISWSTMISGLAQ 349
N L+D YCK G +E+A+ +F+ M ++ +V ++S +I GL +
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-06
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269
V +NS+I G+ + ++EAL L+K MK G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMP---YEPDAVTWRALLGAC 450
Y+ +ID + GK++EA+KL +EM +P+ T+ L+
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 113 NILLNMHVKFSLLEEAQVLFDQMPER----NVVSWTTMISAYCD 152
N L++ + K +EEA LF++M +R NV +++ +I C
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRI 368
++++++ISG + G +EAL+LF+ MK +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 13/148 (8%)
Query: 48 RFCYQR-DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHA--VEEAKLVHNHVLSGG 104
C Q+ D A+ M+ GV+ D V ++ L+ +A HA +++A + G
Sbjct: 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD--VAGHAGDLDKAFEILQDARKQG 679
Query: 105 FEPETFLVNILLNMHVKFSLLEEAQVLFDQ------MPERNVVSWTTMISAYCDAKMNDK 158
+ T + L+ ++A L++ P V + +I+A C+ K
Sbjct: 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP--TVSTMNALITALCEGNQLPK 737
Query: 159 ALELLIFMLREGVRPNMFTYSAVLRACD 186
ALE+L M R G+ PN TYS +L A +
Sbjct: 738 ALEVLSEMKRLGLCPNTITYSILLVASE 765
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLREGV 171
V++ ++IS YC A ++ALEL M +GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371
++++T+I GL + G +EAL+LF+ MK I+P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
V +N++I G + V+EAL L+K MK G D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 6e-05
Identities = 11/34 (32%), Positives = 24/34 (70%)
Query: 331 RMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364
+ ++ DV++++T+I GL + G EA++L + M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (101), Expect = 2e-04
Identities = 39/208 (18%), Positives = 75/208 (36%), Gaps = 9/208 (4%)
Query: 297 VHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK-----DVISWSTMISGLAQNG 351
+ +L L L K G LE+A+ + + ++ + + L G
Sbjct: 50 LELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALG 109
Query: 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR-EH 410
+EAL+L E P+ + L A G E+ ++ + E
Sbjct: 110 KYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEA 169
Query: 411 YSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHR---NTDLAICAAKKIL 467
+ LL G+ +EA++L+ + ALL ++ + A+ +K L
Sbjct: 170 LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKAL 229
Query: 468 NLDPQDPGTYILLSNIYANSQKWDEVAE 495
LDP + L+ + +++E E
Sbjct: 230 ELDPDNAEALYNLALLLLELGRYEEALE 257
|
Length = 291 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDV 337
N+L+ YCK G LE+A+ +F M +K V
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 5e-04
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 134 QMPERNVVSWTTMISAYCDAKMNDKALELLIFM 166
+ + +VV++ T+I C A D+A+ELL M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 9e-04
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 421 AGKLQEAVKLIHE-MPYEPDAVTWRALLGACKVHR-NTDLAICAAKKILNLDPQDPGTYI 478
G EA++ + + +PD L A + A+ +K L LDP + Y
Sbjct: 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYY 72
Query: 479 LLSNIYANSQKWDEVAE 495
L Y K++E E
Sbjct: 73 NLGLAYYKLGKYEEALE 89
|
Length = 100 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 411 YSCMIDLLGRAGKLQEAVKLIHEM 434
Y+ +I +AGKL+EA++L EM
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 141 VSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174
V++ T+I C A ++ALEL M G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDV 337
NALL K G + A++V M +
Sbjct: 5 NALLLALAKAGDPDLALAVLEEMKASGL 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTR----DLVVWNSIIGGFAQ 250
DV + LID Y K G++ A +FNEM R ++ ++ +I G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDV 337
N L+D CK G +E+A+ +F M ++ +
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.003
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMK 265
D+V +N++I G + VDEA+ L M+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 643 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.69 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.63 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.55 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.51 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.5 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.5 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.49 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.48 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.47 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.47 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.45 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.43 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.43 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.42 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.42 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.4 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.39 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.38 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.38 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.34 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.33 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.33 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.33 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.33 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.31 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.27 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.26 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.25 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.25 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.22 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.21 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.21 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.17 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.17 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.12 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.12 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.07 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.06 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.03 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.94 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.94 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.92 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.9 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.89 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.88 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.85 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.82 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.8 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.78 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.77 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.75 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.75 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.75 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.74 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.73 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.71 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.7 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.7 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.67 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.67 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.6 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.59 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.58 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.56 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.49 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.49 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.47 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.46 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.45 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.45 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.44 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.42 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.37 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.36 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.33 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.32 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.31 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.29 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.25 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.24 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.23 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.22 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.22 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.22 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.21 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.21 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.18 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.18 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.17 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.15 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.13 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.12 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.1 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.1 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.1 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.09 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.07 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.03 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.02 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.01 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.96 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.96 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.91 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.91 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.87 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.86 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.8 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.8 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.77 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.77 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.73 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.7 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.64 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.6 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.6 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.53 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.5 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.5 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.42 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.41 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.41 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.41 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.41 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.39 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.39 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.38 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.37 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.35 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.35 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.34 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.32 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.29 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.29 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.26 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.25 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.24 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.23 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.22 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.19 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.18 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.17 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.14 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.14 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.13 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.12 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.09 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.09 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.01 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.01 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.99 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.99 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.96 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.93 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.91 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.89 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.89 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.89 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.88 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.86 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.83 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.76 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.74 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.69 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.64 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.6 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.59 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.58 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.37 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.37 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.36 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.28 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.27 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.25 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.22 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.15 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.14 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.08 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.02 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.94 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.92 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.85 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.85 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.8 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.79 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.72 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.61 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.57 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.37 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.28 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.28 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.27 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.23 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.21 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.21 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.19 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.15 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.06 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.92 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.86 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.85 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.81 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.74 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.66 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.6 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.43 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.25 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.15 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.12 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.09 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.95 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.88 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.78 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.76 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.73 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.61 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.45 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.43 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.38 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.32 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.23 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.2 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.13 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.96 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.93 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.86 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.54 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.34 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.32 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.06 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.79 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.64 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.42 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.05 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.92 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.91 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.79 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.74 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.66 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.35 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 90.33 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 90.3 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.02 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.61 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.58 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.52 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.41 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.26 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.13 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.28 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.48 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.38 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.35 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.96 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 86.19 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.18 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.94 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.73 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.69 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.67 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.58 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.99 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.97 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.75 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.5 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.3 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 84.18 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 83.68 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 83.45 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.4 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.35 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.19 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 82.85 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.75 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 82.5 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 82.46 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.44 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.86 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.34 | |
| KOG1498 | 439 | consensus 26S proteasome regulatory complex, subun | 80.68 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 80.38 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 80.36 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-123 Score=1022.56 Aligned_cols=608 Identities=39% Similarity=0.722 Sum_probs=598.7
Q ss_pred CCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHH
Q 045672 36 TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHG-VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114 (643)
Q Consensus 36 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 114 (643)
.++.++|+++|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|.+.++++.|.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3466799999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH--
Q 045672 115 LLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR-- 192 (643)
Q Consensus 115 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-- 192 (643)
|+.+|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++++|+..+...
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred -HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 045672 193 -QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271 (643)
Q Consensus 193 -~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 271 (643)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCChhHhHHHHHHHHhh--cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 045672 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQ 349 (643)
Q Consensus 272 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 349 (643)
|..||+.++.+|++.|.++.|+++|..+.+ +.++..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 045672 350 NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429 (643)
Q Consensus 350 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 429 (643)
+|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|+++|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999878999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCC
Q 045672 430 LIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEP 509 (643)
Q Consensus 430 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 509 (643)
++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|+.+.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCcccccccchhhhhhhhhhhhHHHHHHHhhccCC
Q 045672 510 GCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMSLT 589 (643)
Q Consensus 510 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 589 (643)
|+||+++++.+|.|.+||..||+..+|+..+.++..+|++.||.||+.+++|++++++|+..+.+||||||++|||+++|
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~ 643 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTS 643 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeccccccchhhHHHHHhhhcCeeEEEeCCCcccccCCcccCCCCCC
Q 045672 590 QGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGDYW 643 (643)
Q Consensus 590 ~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~s~~~~w 643 (643)
+|.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||++|+|||+|||
T Consensus 644 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 644 EWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-120 Score=1022.37 Aligned_cols=606 Identities=38% Similarity=0.671 Sum_probs=596.5
Q ss_pred cCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHH
Q 045672 33 NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112 (643)
Q Consensus 33 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 112 (643)
.|+.||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+|
T Consensus 247 ~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred cCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH
Q 045672 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192 (643)
Q Consensus 113 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 192 (643)
|+|+.+|+++|++++|.++|++|.+||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 045672 193 ---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269 (643)
Q Consensus 193 ---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 269 (643)
++|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. ++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986 59
Q ss_pred CCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh--cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 045672 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347 (643)
Q Consensus 270 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 347 (643)
+||..||+.++.+|++.|+++.++++|..+.+ +.++..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~ 564 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGY 564 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHH
Confidence 99999999999999999999999999999999 8999999999999999999999999999999 99999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 427 (643)
+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|+|+|++++|
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999997789999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCc
Q 045672 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507 (643)
Q Consensus 428 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 507 (643)
.+++++|+++||..+|++|+++|+.+|+.+.|+.+.+++++++|+++..|..|+++|+..|+|++|.++++.|+++|++|
T Consensus 645 ~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCcccccccchhhhhhhhhhhhHHHHHHHhhcc
Q 045672 508 EPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLAIVFGLMS 587 (643)
Q Consensus 508 ~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 587 (643)
+||+|||++++.+|.|.++|.+||+.++||..|.++..+|++.||.||+..++ ++++++|+..+++||||||++|||++
T Consensus 725 ~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~ 803 (857)
T PLN03077 725 DPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLIN 803 (857)
T ss_pred CCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999888 55788999999999999999999999
Q ss_pred CCCCCcEEEEeccccccchhhHHHHHhhhcCeeEEEeCCCcccccCCcccCCCC
Q 045672 588 LTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQDGNCSCGD 641 (643)
Q Consensus 588 ~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~s~~~ 641 (643)
+|+|.||||+||||+|+|||+++|+||++.+|+|||||.+|||||++|+|||+|
T Consensus 804 ~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 804 TVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-75 Score=655.10 Aligned_cols=585 Identities=28% Similarity=0.406 Sum_probs=516.0
Q ss_pred cCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHH
Q 045672 33 NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112 (643)
Q Consensus 33 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 112 (643)
.|+.||+++||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++++.+.++|..+.+.|+.||..++
T Consensus 146 ~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (857)
T PLN03077 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225 (857)
T ss_pred cCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH
Q 045672 113 NILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192 (643)
Q Consensus 113 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 192 (643)
|+||.+|+++|++++|.++|++|+++|.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.++.+
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 045672 193 ---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269 (643)
Q Consensus 193 ---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 269 (643)
++|..+.+.|+.||..+||+|+.+|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh--cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 045672 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347 (643)
Q Consensus 270 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 347 (643)
.||..||+.++.+|++.|+++.|.++|+.+.+ ..++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999 8899999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 427 (643)
+++|+.++|+++|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+. |+.++..++++|+++|+++|++++|
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHH
Confidence 999999999999999986 59999999999999999999999999999999985 9999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHccCChhHHHHHHHHHH-hCCC
Q 045672 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD-PQDPGTYILLSNIYANSQKWDEVAEVRKTMR-ARGI 505 (643)
Q Consensus 428 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~ 505 (643)
.++|+++ .||..+|++++.+|.++|+.++|+++|++|.+.+ .+|..+|..++.+|++.|++++|.++|+.|. +.|+
T Consensus 544 ~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 544 WNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 9999999 7999999999999999999999999999999854 3366799999999999999999999999999 6788
Q ss_pred CcCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCcccccccchhhhhhhhhhhhHHHH-HHHh
Q 045672 506 TKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYHSEKLA-IVFG 584 (643)
Q Consensus 506 ~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~la-~~~~ 584 (643)
.|+..... ..+..|... +..+ +..+.+++++..||...|..-+..+...+.+. -.|..+ ..+.
T Consensus 622 ~P~~~~y~----~lv~~l~r~----G~~~-------eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~ 685 (857)
T PLN03077 622 TPNLKHYA----CVVDLLGRA----GKLT-------EAYNFINKMPITPDPAVWGALLNACRIHRHVE-LGELAAQHIFE 685 (857)
T ss_pred CCchHHHH----HHHHHHHhC----CCHH-------HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHh
Confidence 77642110 011111111 1233 33344455678999876655444443222211 112222 2244
Q ss_pred hccCCCCCcEEEEeccccccchhhHHHHHhhhcCeeE--------EEeCCCcccccCCcccC
Q 045672 585 LMSLTQGKTIRIRKNLRICGDCHTFAKLTAKMENQTI--------VIRDPIRYHHFQDGNCS 638 (643)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~~--------~~~~~~~~h~~~~g~~s 638 (643)
+.+...+..+.+..-+...|+..++.+....|..+.+ |.- .+..|-|..|.-|
T Consensus 686 l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~-~~~~~~f~~~d~~ 746 (857)
T PLN03077 686 LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV-KGKVHAFLTDDES 746 (857)
T ss_pred hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE-CCEEEEEecCCCC
Confidence 5555555554444556778999999999988876633 221 2467778666544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=553.67 Aligned_cols=467 Identities=18% Similarity=0.236 Sum_probs=432.0
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 116 (643)
++...++.++.+|.+.|..++|+.+|+.|.. ||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI 479 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4555666777888899999999999988873 899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChhHHHHHHccCC----CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH
Q 045672 117 NMHVKFSLLEEAQVLFDQMP----ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192 (643)
Q Consensus 117 ~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 192 (643)
.+|+++|++++|.++|++|. .||..+|++||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~d 559 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998 48999999999999999999999999999999999999999999999999999988
Q ss_pred ---HHHHHHHH--hCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC----CCcchHHHHHHHHHhCCChhHHHHHHHH
Q 045672 193 ---QLHCGIIK--VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT----RDLVVWNSIIGGFAQNSDVDEALNLYKR 263 (643)
Q Consensus 193 ---~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~ 263 (643)
+++..|.+ .|+.||..+|++||.+|+++|++++|.++|++|.+ ++..+||++|.+|++.|++++|+++|++
T Consensus 560 eA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~e 639 (1060)
T PLN03218 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639 (1060)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 78888876 67999999999999999999999999999999976 4669999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh--cCCchhHHhHHHHHHHhcCCHHHHHHHHhhc----CCCCh
Q 045672 264 MKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRM----IQKDV 337 (643)
Q Consensus 264 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m----~~~~~ 337 (643)
|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+ ..|+..+|++||++|+++|++++|.++|++| ..||+
T Consensus 640 M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999998 8999999999999999999999999999999 46899
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
.+||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|..|.+. |+.||..+|++++++
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999985 999999999999976
Q ss_pred HH----hcC-------------------CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cC
Q 045672 418 LG----RAG-------------------KLQEAVKLIHEM---PYEPDAVTWRALLGACKVHRNTDLAICAAKKILN-LD 470 (643)
Q Consensus 418 ~~----~~g-------------------~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~ 470 (643)
+. +++ ..++|..+|++| ++.||..||+.++.++...+..+.+..+++.+.. -.
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~ 878 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISAD 878 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCC
Confidence 43 222 246799999999 7889999999999888888889999888887654 34
Q ss_pred CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCc
Q 045672 471 PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPG 510 (643)
Q Consensus 471 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 510 (643)
+++..+|..|++.+.+. .++|..++++|...|+.|+..
T Consensus 879 ~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 879 SQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 55778999999988432 368999999999999987764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-61 Score=535.02 Aligned_cols=505 Identities=17% Similarity=0.274 Sum_probs=457.7
Q ss_pred CCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHH
Q 045672 34 TITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGV-RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV 112 (643)
Q Consensus 34 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 112 (643)
.+.+|...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|.+++|..++..|. .||..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHH
Confidence 3456788899999999999999999999999999985 5688888999999999999999999999885 3999999
Q ss_pred HHHHHHHHcCCChhHHHHHHccCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhch
Q 045672 113 NILLNMHVKFSLLEEAQVLFDQMPE----RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188 (643)
Q Consensus 113 ~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 188 (643)
+.|+.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999975 899999999999999999999999999999999999999999999999999
Q ss_pred hhHH---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC------CCCcchHHHHHHHHHhCCChhHHHH
Q 045672 189 IILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP------TRDLVVWNSIIGGFAQNSDVDEALN 259 (643)
Q Consensus 189 ~~~~---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g~~~~A~~ 259 (643)
|+.+ +++..|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||.++|+++|.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 9998 789999999999999999999999999999999999999995 4789999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh--cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC----
Q 045672 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI---- 333 (643)
Q Consensus 260 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---- 333 (643)
+|++|.+.|+.|+..+|+.++.+|++.|++++|..+|..|.+ +.||..+|++|+++|++.|++++|.++|+.|.
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999998 89999999999999999999999999999995
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 045672 334 QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413 (643)
Q Consensus 334 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 413 (643)
.+|..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+. |+.||..+|++
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~s 759 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSI 759 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999985 99999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHH
Q 045672 414 MIDLLGRAGKLQEAVKLIHEM---PYEPDAVTWRALLGACKV-----------------------HRNTDLAICAAKKIL 467 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~-----------------------~g~~~~a~~~~~~~~ 467 (643)
++.+|++.|++++|.+++++| ++.||..+|+++++.|.+ .+..+.|..+|++|+
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 999999999999999999999 788999999999977643 123477999999999
Q ss_pred hcC-CCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHH
Q 045672 468 NLD-PQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQK 546 (643)
Q Consensus 468 ~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~ 546 (643)
+.+ .+|..+|..++..+...+.++.+..+++.|...+..+..... +..++++. . + ..+ ...++++
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y----~~Li~g~~--~--~--~~~----A~~l~~e 905 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNL----STLVDGFG--E--Y--DPR----AFSLLEE 905 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhh----HHHHHhhc--c--C--hHH----HHHHHHH
Confidence 866 446789999998888999999999999888766654332211 22233331 1 1 122 3578999
Q ss_pred HHhCCcccCCc
Q 045672 547 LVGVGYAPDTN 557 (643)
Q Consensus 547 ~~~~g~~~d~~ 557 (643)
|.+.|+.|+..
T Consensus 906 m~~~Gi~p~~~ 916 (1060)
T PLN03218 906 AASLGVVPSVS 916 (1060)
T ss_pred HHHcCCCCCcc
Confidence 99999999875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-57 Score=499.06 Aligned_cols=481 Identities=24% Similarity=0.376 Sum_probs=415.8
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHhchhhHH---HHHHHHHHhCCCCchhHHHHH
Q 045672 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSAL 213 (643)
Q Consensus 138 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~---~~~~~~~~~g~~~~~~~~~~l 213 (643)
++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++.+ ++|..+.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 577899999999999999999999999998764 7899999999999999988886 999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHH
Q 045672 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293 (643)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 293 (643)
+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh--cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045672 294 QVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371 (643)
Q Consensus 294 ~i~~~~~~--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 371 (643)
++|..+.+ +.++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999998 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 045672 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACK 451 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 451 (643)
..||+.++.+|++.|++++|.+++..|.+. |+.|+..+|++|+++|+++|++++|.++|++|. +||..+|++||.+|.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHH
Confidence 999999999999999999999999999995 999999999999999999999999999999996 589999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHccCChhHHHHHHHHHHh-CCCCcCCceeEEEECCEEEEEEeCCCC
Q 045672 452 VHRNTDLAICAAKKILNLD-PQDPGTYILLSNIYANSQKWDEVAEVRKTMRA-RGITKEPGCSWIEVNKQIHAFNVADSS 529 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~s~~~~~~~~~~f~~~~~~ 529 (643)
++|+.++|+++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|.+ .|+.|+.... +..+..|..
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y----~~li~~l~r---- 474 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY----ACMIELLGR---- 474 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch----HhHHHHHHh----
Confidence 9999999999999998855 33678999999999999999999999999986 5887654221 111111221
Q ss_pred CcchHHHHHHHHHHHHHHHhCCcccCCcccccccchhhhhhhh---hhhhHHHHHHHhhccCCCCCcEEEEeccccccch
Q 045672 530 HPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSI---QYHSEKLAIVFGLMSLTQGKTIRIRKNLRICGDC 606 (643)
Q Consensus 530 ~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~~~~~~~~l~~c~~~ 606 (643)
.+..+++ .+.+++.+..||..++..-+..+.+.+.+ ....++ .+++.+...+..+.+++-+..+|+.
T Consensus 475 ~G~~~eA-------~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~---l~~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 475 EGLLDEA-------YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK---LYGMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred cCCHHHH-------HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH---HhCCCCCCCcchHHHHHHHHhCCCH
Confidence 2234444 33455678999988766555554433322 111222 2455444445555667788999999
Q ss_pred hhHHHHHhhhcCeeEEEe-------CCCcccccCCcccC
Q 045672 607 HTFAKLTAKMENQTIVIR-------DPIRYHHFQDGNCS 638 (643)
Q Consensus 607 ~~~~~~~s~~~~~~~~~~-------~~~~~h~~~~g~~s 638 (643)
.+|.+++.+|..+++... -.+..|.|-.|..+
T Consensus 545 ~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 545 AEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred HHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence 999999999988865321 12455777655433
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-27 Score=271.18 Aligned_cols=458 Identities=13% Similarity=0.053 Sum_probs=340.8
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
+...|..+...+...|++++|++.|+.+.+.. +.+......++..+.+.|++++|..+++.+.+.. +.+..++..+..
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 473 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGA 473 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHH
Confidence 45567778888888888888888888887654 2234455566777788888888888888887753 456677888888
Q ss_pred HHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH--
Q 045672 118 MHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR-- 192 (643)
Q Consensus 118 ~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-- 192 (643)
.|...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+...|+.+
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888887654 345567777888888888888888888887653 234556666666666666666
Q ss_pred -HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 045672 193 -QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268 (643)
Q Consensus 193 -~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 268 (643)
..+..+.+.+ +.+...+..++..|.+.|++++|..+++++.+ .+...|..+...|...|++++|+..|+++.+..
T Consensus 553 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 553 VAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3344443332 34556677788888888888888888887754 355678888888888888888888888887653
Q ss_pred CCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHH
Q 045672 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMI 344 (643)
Q Consensus 269 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li 344 (643)
+.+...+..+..++...|+++.|..++..+.+ .+.+...+..++..+...|++++|..+++.+.+ .+...|..+.
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 710 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEG 710 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHH
Confidence 33556677777778888888888888888887 555677778888888888888888888887743 2455677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 045672 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424 (643)
Q Consensus 345 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 424 (643)
..+...|++++|++.|+++... .|+..++..+..++.+.|+.++|.+.++.+.+ ..+.+...+..+...|.+.|++
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCH
Confidence 7888888888888888888774 35556677777788888888888888888776 3455677777888888888888
Q ss_pred HHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 425 QEAVKLIHEM-P-YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 425 ~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
++|.+.|+++ . .+++..+++.+...+...|+ ++|+..++++++..|+++..+..++.+|...|++++|.++++++.+
T Consensus 787 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888776 2 23456677777777777777 6788888888888888777777888888888888888888888877
Q ss_pred CCC
Q 045672 503 RGI 505 (643)
Q Consensus 503 ~g~ 505 (643)
.+.
T Consensus 866 ~~~ 868 (899)
T TIGR02917 866 IAP 868 (899)
T ss_pred hCC
Confidence 653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-26 Score=266.69 Aligned_cols=459 Identities=13% Similarity=0.045 Sum_probs=393.4
Q ss_pred CCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHH
Q 045672 36 TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNIL 115 (643)
Q Consensus 36 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 115 (643)
..+...|+.+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|...+..+.+.... .......+
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 437 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLL 437 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHH
Confidence 3456789999999999999999999999998764 446777888888999999999999999999887543 34566778
Q ss_pred HHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH
Q 045672 116 LNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192 (643)
Q Consensus 116 i~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 192 (643)
+..|.+.|++++|..+++++.. .+..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+.+
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 8899999999999999998875 467789999999999999999999999998753 223445666666777777776
Q ss_pred ---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 045672 193 ---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266 (643)
Q Consensus 193 ---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (643)
..+..+.+.. +.+..++..+...|.+.|+.++|...|+++.. .+...+..++..|...|++++|+++++++.+
T Consensus 517 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 517 DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555543 45678889999999999999999999998754 3556788899999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHH
Q 045672 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWST 342 (643)
Q Consensus 267 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~ 342 (643)
.. +.+..++..+..++...|+++.|...+..+.+ .+.+...+..+...|.+.|++++|...|+++.+ .+..+|..
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIG 674 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 53 55778899999999999999999999999998 666778889999999999999999999998843 35778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 422 (643)
++..+...|++++|.++++.+...+ +++...+..+...+...|++++|...|+.+.+. .|+...+..++..+.+.|
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCC
Confidence 9999999999999999999998875 456777888888999999999999999999873 466678888999999999
Q ss_pred CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHH
Q 045672 423 KLQEAVKLIHEM-P-YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500 (643)
Q Consensus 423 ~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 500 (643)
++++|.+.++++ . .+.+...+..+...|...|+.++|...++++++..|+++.++..++.+|...|+ ++|..+++++
T Consensus 751 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 999999999887 2 334677888888899999999999999999999999999999999999999999 8899999998
Q ss_pred HhCC
Q 045672 501 RARG 504 (643)
Q Consensus 501 ~~~g 504 (643)
.+..
T Consensus 830 ~~~~ 833 (899)
T TIGR02917 830 LKLA 833 (899)
T ss_pred HhhC
Confidence 8753
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=212.26 Aligned_cols=106 Identities=56% Similarity=1.032 Sum_probs=96.6
Q ss_pred ceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHhCCcccCCcccccccchhhh--------hhhhhhhhHHHHH
Q 045672 510 GCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQK--------EDSIQYHSEKLAI 581 (643)
Q Consensus 510 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~--------~~~~~~~~~~la~ 581 (643)
||||+++ |.|.+||.+||+. ++..++...||.|++..+.|+++++++ +..+..||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899876 9999999999987 456677888999999999998877665 5688999999999
Q ss_pred HHhhccCCCCCcEEEEecc-ccccchhhHHHHHhhhcCeeEEEeCCCcccccC
Q 045672 582 VFGLMSLTQGKTIRIRKNL-RICGDCHTFAKLTAKMENQTIVIRDPIRYHHFQ 633 (643)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l-~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 633 (643)
+|||+++ +|+||+ |+|+|||+|+|+||++.+|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 889999 999999999999999999999999999999996
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-19 Score=207.68 Aligned_cols=456 Identities=14% Similarity=0.063 Sum_probs=273.3
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhH-----------------HHHHHHHHccCCHHHHHHHHHHH
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTY-----------------AELIKCCLARHAVEEAKLVHNHV 100 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-----------------~~ll~~~~~~~~~~~a~~~~~~~ 100 (643)
|...+..++..+.+.|+.++|.+.+++..+.. |+...+ ..+.+.+...|++++|.+.++.+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 56667888888889999999999999988764 333222 22334567889999999999998
Q ss_pred HHcCCCCchhH-HHHHHHHHHcCCChhHHHHHHccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC---
Q 045672 101 LSGGFEPETFL-VNILLNMHVKFSLLEEAQVLFDQMPE--R-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP--- 173 (643)
Q Consensus 101 ~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--- 173 (643)
++.+. |+... ...........|+.++|++.|+++.+ | +...+..+...+...|+.++|++.++++.......
T Consensus 139 l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 139 FNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred ccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHH
Confidence 87643 33221 11112222345889999999988876 3 45578888888999999999999999886532100
Q ss_pred -------------Chh---hHHHHHHHHhchhhHH---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 045672 174 -------------NMF---TYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234 (643)
Q Consensus 174 -------------~~~---t~~~ll~a~~~~~~~~---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 234 (643)
+.. .+...+..+....... .......+....|+.. ...+...+...|++++|...|++..
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 000 0111111111111111 0111111111112111 1123345556666666666666654
Q ss_pred C---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHH------------HHHHHHHhcCChhHhHHHHHHH
Q 045672 235 T---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD-QSTL------------TSVLRACTGLALLELGTQVHVH 298 (643)
Q Consensus 235 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~------------~~ll~a~~~~~~~~~a~~i~~~ 298 (643)
+ .+...+..+...|.+.|++++|+..|++..+...... ...+ ......+...|++++|...++.
T Consensus 297 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 297 RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3 2445666666666666666666666666655322111 1111 1112334556666666666666
Q ss_pred Hhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhH----------------------------------
Q 045672 299 VLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--K-DVISW---------------------------------- 340 (643)
Q Consensus 299 ~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~---------------------------------- 340 (643)
+.+ .+.+...+..|...|...|++++|.+.|++..+ | +...+
T Consensus 377 Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 377 ARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 666 444445555666666666666666666666532 1 11111
Q ss_pred --------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 045672 341 --------STMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411 (643)
Q Consensus 341 --------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 411 (643)
..+...+...|++++|++.|++.++. .|+ ...+..+...+.+.|++++|...++.+.+.. +.+...+
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~ 532 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQV 532 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHH
Confidence 22334455678888888888888774 454 4556667777888888888888888876531 1122222
Q ss_pred HH--------------------------------------------HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 045672 412 SC--------------------------------------------MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447 (643)
Q Consensus 412 ~~--------------------------------------------li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 447 (643)
.. +.+.+...|+.++|.++++.-| ++...+..+.
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La 610 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRIDLTLA 610 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHHH
Confidence 21 2334455566666666655332 2344556666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
..+...|++++|+..++++++.+|+++.++..++.+|...|++++|.+.++...+.
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 77888888888888888888888888888888888888888888888888876643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-20 Score=180.35 Aligned_cols=439 Identities=15% Similarity=0.152 Sum_probs=346.7
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 121 (643)
-..+.....+.|++++|.+.-...-+.+ +.+......+-..+.+..+++...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4456667778999999998766554443 3344444444455666667776666555555543 2345789999999999
Q ss_pred CCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhchhhHHHH
Q 045672 122 FSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF----TYSAVLRACDSLIILRQL 194 (643)
Q Consensus 122 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~~ 194 (643)
.|++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++. .|+.. ....++++-++......-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999998876 35689999999999999999999999998864 56543 344455555554444422
Q ss_pred HHHHHHhCCCCc-hhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 045672 195 HCGIIKVGFESD-VFVRSALIDIYAKLGELRNAECVFNEMPTRDL---VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270 (643)
Q Consensus 195 ~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 270 (643)
+...++ ..|. ..+|+.|...+-..|++..|...|++...-|+ .+|-.|...|...+.+++|+..|.+.... +
T Consensus 207 YlkAi~--~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--r 282 (966)
T KOG4626|consen 207 YLKAIE--TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--R 282 (966)
T ss_pred HHHHHh--hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--C
Confidence 222222 2333 46688888889999999999999999876443 57888999999999999999999887763 5
Q ss_pred CC-HHHHHHHHHHHhcCChhHhHHHHHHHHhhcCC-chhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHH
Q 045672 271 AD-QSTLTSVLRACTGLALLELGTQVHVHVLKYDH-DLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMIS 345 (643)
Q Consensus 271 p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~ 345 (643)
|+ ...+..+...|-..|.++.|..-+++++...| -...|+.|..++-..|++.+|...+.+... ....+.+.+..
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 64 56777777788899999999999999999444 467899999999999999999999988743 24567888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCC
Q 045672 346 GLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGK 423 (643)
Q Consensus 346 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 423 (643)
.|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|...+++..+ +.|+ ...|+.+...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999887 5676 56788899999999999999999998875 6786 4689999999999999
Q ss_pred HHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHH
Q 045672 424 LQEAVKLIHEM-PYEPDA-VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493 (643)
Q Consensus 424 ~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 493 (643)
.+.|...+.+. .+.|.- ...+.|.+.+...|+..+|+..|+.+++++|+.+.+|..++.+..-..+|.+=
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 99999999887 667754 47788889999999999999999999999999999999998888766666653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-19 Score=204.14 Aligned_cols=450 Identities=10% Similarity=0.002 Sum_probs=300.5
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 121 (643)
+...+..+-.....+.|...+..+......|+... .....++...|++++|...++..++..+ .+...+..|...|.+
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~ 315 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQ 315 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 33333333333334455555555443222222111 1223344455666666666666665432 245555666666666
Q ss_pred CCChhHHHHHHccCCC--CCc---chHHHH------------HHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 045672 122 FSLLEEAQVLFDQMPE--RNV---VSWTTM------------ISAYCDAKMNDKALELLIFMLREGVRPN-MFTYSAVLR 183 (643)
Q Consensus 122 ~g~~~~A~~~f~~m~~--~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 183 (643)
.|++++|+..|++..+ |+. ..|..+ ...+.+.|++++|++.|++..+. .|+ ...+..+-.
T Consensus 316 ~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~ 393 (1157)
T PRK11447 316 QGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGD 393 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 6666666666665543 211 112111 23445566666666666666654 232 223333334
Q ss_pred HHhchhhHH---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC------------cchHHHHHHHH
Q 045672 184 ACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD------------LVVWNSIIGGF 248 (643)
Q Consensus 184 a~~~~~~~~---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~ 248 (643)
.+...|+.+ +.+..+++.. +.+...+..+...|. .++.++|..+++.+.... ...+..+...+
T Consensus 394 ~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 394 VAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 444444444 3333333322 223444555666664 457889998888775421 22355667788
Q ss_pred HhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHH
Q 045672 249 AQNSDVDEALNLYKRMKRAGFAA-DQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAM 326 (643)
Q Consensus 249 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~ 326 (643)
...|++++|++.|++..+. .| +...+..+...+...|++++|...++.+.+ .+.+...+..+...+.+.|+.++|.
T Consensus 472 ~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 8999999999999999885 34 456677788889999999999999999988 5556666666667778899999999
Q ss_pred HHHhhcCCCC----h---------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 045672 327 SVFSRMIQKD----V---------ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393 (643)
Q Consensus 327 ~~~~~m~~~~----~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 393 (643)
..++.+.... . ..+..+...+...|+.++|+.+++. .+++...+..+...+.+.|+.++|+.
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 9999885421 1 1123456678899999999999882 24455667778888999999999999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP-YEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
.|+.+.+. -+.+...+..++..|...|++++|.+.++... ..|+ ...+..+..++...|++++|..+++++++..|
T Consensus 625 ~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 625 AYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 99999873 34467889999999999999999999999873 3444 55677778888999999999999999998876
Q ss_pred CCc------chHHHHHHHHHccCChhHHHHHHHHHHh-CCCC
Q 045672 472 QDP------GTYILLSNIYANSQKWDEVAEVRKTMRA-RGIT 506 (643)
Q Consensus 472 ~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~ 506 (643)
+++ ..+..++.++...|++++|.+.+++... .|+.
T Consensus 703 ~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 703 SQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred cCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 544 3566779999999999999999998863 3453
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-20 Score=190.44 Aligned_cols=299 Identities=15% Similarity=0.085 Sum_probs=219.1
Q ss_pred HHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHcC
Q 045672 46 FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE---TFLVNILLNMHVKF 122 (643)
Q Consensus 46 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 122 (643)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 345567899999999999999874 44667889999999999999999999999988643222 25678889999999
Q ss_pred CChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHH
Q 045672 123 SLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGII 199 (643)
Q Consensus 123 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~ 199 (643)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++++.+.+..++....
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------------------- 179 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI--------------------- 179 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH---------------------
Confidence 999999999999976 46678999999999999999999999999876432221100
Q ss_pred HhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 045672 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT--R-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL 276 (643)
Q Consensus 200 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 276 (643)
...+..+...|.+.|++++|.+.|+++.+ | +...+..+...|.+.|++++|.++|+++.+.+......++
T Consensus 180 -------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 180 -------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred -------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 11234577788899999999999998764 2 4557788889999999999999999999875432224456
Q ss_pred HHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHh---cC
Q 045672 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI--QKDVISWSTMISGLAQ---NG 351 (643)
Q Consensus 277 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~---~g 351 (643)
..+..++...|+.+.|...+..+.+..|+...+..++..|.+.|++++|..+|+++. .|+..+++.++..+.. .|
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEG 332 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCc
Confidence 666666667777777777666666644454455666666666666666666666553 2555566666655543 44
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH
Q 045672 352 YSQEALKLFESMKVSRIKPNYI 373 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~~~ 373 (643)
+.++++.++++|.+.+++|++.
T Consensus 333 ~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 333 RAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred cchhHHHHHHHHHHHHHhCCCC
Confidence 6666666666666655555544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-18 Score=186.27 Aligned_cols=417 Identities=11% Similarity=0.002 Sum_probs=287.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhC
Q 045672 77 YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDA 153 (643)
Q Consensus 77 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 153 (643)
+......+.+.|++++|...|+..++. .|+...|..+..+|.+.|++++|...++...+ .+...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 344556677788888888888888874 45667788888888888888888888887765 2445788888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhC
Q 045672 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233 (643)
Q Consensus 154 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 233 (643)
|++++|+..|......+-..+ .....++.............. ..+. .+++...+..+.. |....+...+..-++..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~a~~~~~~-~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRN-EQSAQAVERLLKKFAESKAKE-ILET-KPENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHHHH-HHhc-CCCCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 888888888876654321111 111111111100000001111 1111 1122222222222 22222222222212221
Q ss_pred CCCCc---chHHHHHHHH---HhCCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHhcCChhHhHHHHHHHHhhc-CC
Q 045672 234 PTRDL---VVWNSIIGGF---AQNSDVDEALNLYKRMKRAG-FAA-DQSTLTSVLRACTGLALLELGTQVHVHVLKY-DH 304 (643)
Q Consensus 234 ~~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~ 304 (643)
.+-+. ..+..+...+ ...+++++|++.|++..+.+ ..| +...+..+...+...|+++.|...+..+.+. +.
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 363 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR 363 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 11111 1111111111 23478999999999988764 234 3456677777778899999999999999984 44
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 045672 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLF 380 (643)
Q Consensus 305 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 380 (643)
....+..+...|...|++++|...|+...+ .+...|..+...+...|++++|+..|++.+.. .|+ ...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHH
Confidence 466888899999999999999999998743 35678999999999999999999999999875 454 566777888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHH
Q 045672 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDA-------V-TWRALLGACK 451 (643)
Q Consensus 381 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-------~-~~~~ll~~~~ 451 (643)
.+.+.|++++|...|+...+. .+.+...++.+...|...|++++|.+.|++. ...|+. . .++..+..+.
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 889999999999999999873 3445778999999999999999999999886 333421 1 1222222344
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
..|++++|+.+++++++++|++..++..++.+|.+.|++++|.+.+++..+.
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5699999999999999999999889999999999999999999999998754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-16 Score=177.59 Aligned_cols=449 Identities=10% Similarity=-0.003 Sum_probs=273.8
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH-
Q 045672 40 SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM- 118 (643)
Q Consensus 40 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~- 118 (643)
.++..+...|.+.|++++|+..+++..+. .|+...|..++..+ ++.++|..+++++++..+ .+..++..+...
T Consensus 79 ~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~ 152 (987)
T PRK09782 79 PLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQK-ACDAVPTLRCRSE 152 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhCC-CChhHHHHHHHHh
Confidence 34455555666666666666666655543 23333333322222 555556666666655432 233344444443
Q ss_pred -------HHcCCChhHHHHHHccCCCCC--cchHHH-HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc-
Q 045672 119 -------HVKFSLLEEAQVLFDQMPERN--VVSWTT-MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS- 187 (643)
Q Consensus 119 -------~~~~g~~~~A~~~f~~m~~~~--~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~- 187 (643)
|.+.+...++++ .+...++ ...... +...|.+.|++++|++++.++.+.+... ..-...+-.++..
T Consensus 153 ~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay~q~ 229 (987)
T PRK09782 153 VGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLS-AAERRQWFDVLLAG 229 (987)
T ss_pred hccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHh
Confidence 555444444444 2222232 322333 3778888899999999999998875332 2223333334444
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CCcchH---------------------
Q 045672 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT-----RDLVVW--------------------- 241 (643)
Q Consensus 188 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~--------------------- 241 (643)
.+. +.+... .+..+..+..+..+++..|.+.|+.++|.+++.+++. ++..+|
T Consensus 230 l~~-~~a~al-~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~ 307 (987)
T PRK09782 230 QLD-DRLLAL-QSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQ 307 (987)
T ss_pred hCH-HHHHHH-hchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhh
Confidence 233 323222 2234456888899999999999999999999988752 000000
Q ss_pred ----------------------H--------------------------------------------------HHHHHHH
Q 045672 242 ----------------------N--------------------------------------------------SIIGGFA 249 (643)
Q Consensus 242 ----------------------~--------------------------------------------------~li~~~~ 249 (643)
. -+.-...
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~ 387 (987)
T PRK09782 308 FADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLM 387 (987)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 0 0001123
Q ss_pred hCCChhHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHhcC-----------------------------------------
Q 045672 250 QNSDVDEALNLYKRMKRA-G-FAADQSTLTSVLRACTGL----------------------------------------- 286 (643)
Q Consensus 250 ~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~a~~~~----------------------------------------- 286 (643)
+.|+.++|..+|+..... + ..++......++..+...
T Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 467 (987)
T PRK09782 388 QNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL 467 (987)
T ss_pred HcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh
Confidence 455566666666554431 0 111111222233333222
Q ss_pred ----------------------ChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHH
Q 045672 287 ----------------------ALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--KDVISWST 342 (643)
Q Consensus 287 ----------------------~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~ 342 (643)
+..++|...+.......|+......+...+...|++++|...|+++.. ++...+..
T Consensus 468 l~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~ 547 (987)
T PRK09782 468 LGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLA 547 (987)
T ss_pred cccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHH
Confidence 233344444444444333333333334444578888888888876643 33445666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIKPNY-ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 421 (643)
+...+.+.|+.++|...|++..+.. |+. ..+..+.......|++++|...++...+ ..|+...+..+..++.+.
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHC
Confidence 6677788888888888888887653 433 3333334445566899999988888876 356778888889999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHH
Q 045672 422 GKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKT 499 (643)
Q Consensus 422 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 499 (643)
|++++|.+.+++. ...|+ ...+..+..++...|+.++|+..++++++..|+++..+..++.+|...|++++|...+++
T Consensus 623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 623 HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999887 45564 446677777888999999999999999999999999999999999999999999999998
Q ss_pred HHhCC
Q 045672 500 MRARG 504 (643)
Q Consensus 500 m~~~g 504 (643)
..+..
T Consensus 703 Al~l~ 707 (987)
T PRK09782 703 VIDDI 707 (987)
T ss_pred HHhcC
Confidence 87643
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-19 Score=183.59 Aligned_cols=294 Identities=12% Similarity=0.074 Sum_probs=243.6
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCC
Q 045672 214 IDIYAKLGELRNAECVFNEMPTR---DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD---QSTLTSVLRACTGLA 287 (643)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~ 287 (643)
...+...|++++|...|+++.+. +..+|..+...+...|++++|..+++.+...+..++ ..++..+...+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34567889999999999998753 445788899999999999999999999987543222 245777888899999
Q ss_pred hhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC--------hhhHHHHHHHHHhcCCHHHHHH
Q 045672 288 LLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD--------VISWSTMISGLAQNGYSQEALK 358 (643)
Q Consensus 288 ~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~--------~~~~~~li~~~~~~g~~~~A~~ 358 (643)
+++.|..++..+.+ .+.+..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|+.
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999998 66677889999999999999999999999985432 1245667788899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 045672 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE 437 (643)
Q Consensus 359 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 437 (643)
.|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+. +.......+..++.+|.+.|++++|.+.++++ ...
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999998753 233557777888999999999999999999873 21122456888999999999999999999987 456
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHc---cCChhHHHHHHHHHHhCCCCcCCc
Q 045672 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN---SQKWDEVAEVRKTMRARGITKEPG 510 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 510 (643)
|+...+..+...+.+.|++++|...++++++..|++. .+..+...+.. .|+.+++..++++|.++++.++|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7777778888999999999999999999999999876 56655655553 569999999999999999999885
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-18 Score=170.32 Aligned_cols=418 Identities=14% Similarity=0.170 Sum_probs=331.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhC
Q 045672 77 YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDA 153 (643)
Q Consensus 77 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 153 (643)
...|..-..+.|++++|++.-...-..+. .+....-.+-..+.+..+++....--....+ .-..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-CcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 34455556678999999886665544332 2223333334556666666654432222222 2456899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhchhhHH-HHHHHHHHhCCCCchhHH-HHHHHHHHHcCCHHHHHHHH
Q 045672 154 KMNDKALELLIFMLREGVRPN-MFTYSAVLRACDSLIILR-QLHCGIIKVGFESDVFVR-SALIDIYAKLGELRNAECVF 230 (643)
Q Consensus 154 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~-~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f 230 (643)
|+.++|+.+|+.+.+. +|+ ...|..+-.++...|+.+ ..........+.|+.... +-+.+..-..|++.+|...+
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 9999999999999976 553 557777777777777777 333333444566765544 33555666789999999988
Q ss_pred hhCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCc
Q 045672 231 NEMPT--RD-LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD-QSTLTSVLRACTGLALLELGTQVHVHVLK-YDHD 305 (643)
Q Consensus 231 ~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~ 305 (643)
.+..+ |. .+.|+.|...+-.+|+...|+..|++..+ +.|+ ...|..+...+...+.++.|...+.++.. -+..
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~ 285 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH 285 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc
Confidence 77655 32 47899999999999999999999999887 4554 35677788888888888999888888888 5555
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCCC--C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQK--D-VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFA 381 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 381 (643)
..++..|.-.|..+|.++-|...+++..+. + ...|+.|..++-..|+..+|.+.|.+.+. +.|+ ....+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 678888889999999999999999998543 3 46899999999999999999999999987 4566 5688899999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAV-TWRALLGACKVHRNTDL 458 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~ 458 (643)
+...|.+++|..+|....+ +.|. ....+.|...|-.+|++++|..-+++. .++|+.. .++.+...|...|+.+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 9999999999999998875 4565 457889999999999999999999887 7888754 89999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 459 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
|.+.+.+++..+|.-..++..|+.+|..+|+..+|..-++...+-.
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999887643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-16 Score=172.99 Aligned_cols=447 Identities=11% Similarity=0.002 Sum_probs=308.2
Q ss_pred hHHHHHHHHH--hCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 045672 41 SLLDDFTRFC--YQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118 (643)
Q Consensus 41 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 118 (643)
++--+..++. ..|++++|+..|+...+.. +-+..++..+..++...|+.++|+...++.++..+ .|...+..+ ..
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~ 120 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AA 120 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HH
Confidence 3444444443 3599999999999999875 34578899999999999999999999999999753 344444444 33
Q ss_pred HHcCCChhHHHHHHccCCC--C-CcchHHHHHHH--------HHhCCChhHHHHHHHHHHHCCCCCChhhHHHH-HHHHh
Q 045672 119 HVKFSLLEEAQVLFDQMPE--R-NVVSWTTMISA--------YCDAKMNDKALELLIFMLREGVRPNMFTYSAV-LRACD 186 (643)
Q Consensus 119 ~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~ 186 (643)
+ ++.++|..+++++.. | +...+..+... |.+.++..++ ++ .......|+..+.... .+.+.
T Consensus 121 i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~A---L~-lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 121 I---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQ---LN-DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred h---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHH---HH-HhhhCCCCCcHHHHHHHHHHHH
Confidence 3 899999999999975 3 34455555444 6666444444 44 3333334455555555 78888
Q ss_pred chhhHH---HHHHHHHHhCCCCchhHHHHHHHHHHH-cCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 045672 187 SLIILR---QLHCGIIKVGFESDVFVRSALIDIYAK-LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262 (643)
Q Consensus 187 ~~~~~~---~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 262 (643)
..++++ .+...+.+.+. .+..-...|..+|.. .++ +++..+++...+.++..+..+...|.+.|+.++|.++++
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888877 56666666653 345556667778888 477 999999887656788999999999999999999999998
Q ss_pred HHHHcCCC-CCHHHHHHHH------------------------------HH-----------------------------
Q 045672 263 RMKRAGFA-ADQSTLTSVL------------------------------RA----------------------------- 282 (643)
Q Consensus 263 ~m~~~g~~-p~~~t~~~ll------------------------------~a----------------------------- 282 (643)
++...-.. |...++.-.+ .-
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 351 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAV 351 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhh
Confidence 87543111 2211111100 00
Q ss_pred ----------------------------------HhcCChhHhHHHHHHHHhhcCC------------------------
Q 045672 283 ----------------------------------CTGLALLELGTQVHVHVLKYDH------------------------ 304 (643)
Q Consensus 283 ----------------------------------~~~~~~~~~a~~i~~~~~~~~~------------------------ 304 (643)
....|+.++|.+++......+.
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 0122334444444433322111
Q ss_pred --------------------------------------------chhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhH
Q 045672 305 --------------------------------------------DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISW 340 (643)
Q Consensus 305 --------------------------------------------~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~ 340 (643)
+...+..+...+.. |+.++|...|.+.....+..+
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~ 510 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW 510 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH
Confidence 12222333333333 455566665555433222234
Q ss_pred HHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 045672 341 STMISG--LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418 (643)
Q Consensus 341 ~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 418 (643)
+.+..+ +.+.|++++|+..|+++... .|+...+..+..++.+.|+.++|...++...+. . ++....+..+...+
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l 586 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQR 586 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHH
Confidence 444333 45789999999999987653 455555666777788899999999999988763 2 23333444444455
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHH
Q 045672 419 GRAGKLQEAVKLIHEM-PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497 (643)
Q Consensus 419 ~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 497 (643)
.+.|++++|...+++. ...|+...|..+...+.+.|++++|+..++++++++|+++..+..++.++...|++++|.+.+
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5669999999999887 567888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 045672 498 KTMRARG 504 (643)
Q Consensus 498 ~~m~~~g 504 (643)
++..+..
T Consensus 667 ~~AL~l~ 673 (987)
T PRK09782 667 ERAHKGL 673 (987)
T ss_pred HHHHHhC
Confidence 9988753
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-16 Score=178.35 Aligned_cols=394 Identities=11% Similarity=0.036 Sum_probs=249.2
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 045672 44 DDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123 (643)
Q Consensus 44 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 123 (643)
-.+......|+.++|++++.+..... +.+...+..+..++...|++++|..+++..++.. +.+......+..++...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 34555667888888888888887532 4455568888888888888888888888888764 234566677788888888
Q ss_pred ChhHHHHHHccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHH
Q 045672 124 LLEEAQVLFDQMPE--R-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIK 200 (643)
Q Consensus 124 ~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~ 200 (643)
+.++|...+++..+ | +.. |..+...+...|++++|+..++++.+. .|+
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~-------------------------- 148 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQ-------------------------- 148 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC--------------------------
Confidence 88888888887754 3 444 777888888888888888888888764 343
Q ss_pred hCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcc--------hHHHHHHHHH-----hCCCh---hHHHHHHHHH
Q 045672 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV--------VWNSIIGGFA-----QNSDV---DEALNLYKRM 264 (643)
Q Consensus 201 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m 264 (643)
+...+..+...+...|..+.|.+.++.... ++. ....++.... ..+++ ++|++.++.+
T Consensus 149 -----~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 149 -----TQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred -----CHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 233334477777788888888888877765 211 1111222111 11223 5566666666
Q ss_pred HHc-CCCCCHH-HHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC--hh--
Q 045672 265 KRA-GFAADQS-TLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD--VI-- 338 (643)
Q Consensus 265 ~~~-g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~--~~-- 338 (643)
.+. ...|+.. .+.. .....+.++...|++++|...|+.+.+.+ ..
T Consensus 223 l~~~~~~p~~~~~~~~-----------------------------a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~ 273 (765)
T PRK10049 223 EALWHDNPDATADYQR-----------------------------ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW 273 (765)
T ss_pred HhhcccCCccchHHHH-----------------------------HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH
Confidence 543 1122211 1100 00000122335567777777777765432 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----------CC
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKP---NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG----------ID 405 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~ 405 (643)
.-..+...|...|++++|+..|+++....... .......+..++...|++++|.++++.+.+... -.
T Consensus 274 a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~ 353 (765)
T PRK10049 274 AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSI 353 (765)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCC
Confidence 11123556777777777777777765532110 123344555566777777777777777665210 01
Q ss_pred CC---hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 045672 406 PG---REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480 (643)
Q Consensus 406 p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 480 (643)
|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+...|++++|+..++++++++|+++..+..+
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 22 223455667777788888888887776 2233 455677777777788888888888888888888877777788
Q ss_pred HHHHHccCChhHHHHHHHHHHhC
Q 045672 481 SNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 481 ~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+..+...|++++|..+++.+.+.
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh
Confidence 88888888888888888777654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-15 Score=169.46 Aligned_cols=371 Identities=11% Similarity=0.042 Sum_probs=264.0
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
+...+..+...+...|++++|+.+|++..+.. +.+...+..+...+...|++++|...++.+++..+ .+.. +..+..
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~ 124 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAY 124 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHH
Confidence 44458889999999999999999999988763 44567777888889999999999999999998743 4555 888899
Q ss_pred HHHcCCChhHHHHHHccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHH
Q 045672 118 MHVKFSLLEEAQVLFDQMPE--R-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQL 194 (643)
Q Consensus 118 ~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 194 (643)
++...|+.++|...++++.+ | +...+..+...+...|..++|++.+++... .|+ +..
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~---~~~-------------- 184 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPA---EKR-------------- 184 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHH---HHH--------------
Confidence 99999999999999998876 3 455667788888899999999998876652 333 100
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHH-----HcCCH---HHHHHHHhhCCC---CCcch---H----HHHHHHHHhCCChhH
Q 045672 195 HCGIIKVGFESDVFVRSALIDIYA-----KLGEL---RNAECVFNEMPT---RDLVV---W----NSIIGGFAQNSDVDE 256 (643)
Q Consensus 195 ~~~~~~~g~~~~~~~~~~li~~y~-----~~g~~---~~A~~~f~~~~~---~~~~~---~----~~li~~~~~~g~~~~ 256 (643)
.. .......++..+. ..+++ ++|.+.++.+.+ .++.. + ...+..+...|++++
T Consensus 185 -------~l--~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 185 -------DL--EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred -------HH--HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 00 1112222333332 22334 677877777653 22211 1 112345567799999
Q ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC
Q 045672 257 ALNLYKRMKRAGFA-ADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK 335 (643)
Q Consensus 257 A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~ 335 (643)
|+..|+++.+.+.+ |+..-. .+...|...|++++|...|+++.+.
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~----------------------------------~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQR----------------------------------WVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHH----------------------------------HHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 99999999887532 322111 1234555666666666666665332
Q ss_pred C-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHhccCCHHHHHHH
Q 045672 336 D-------VISWSTMISGLAQNGYSQEALKLFESMKVSR-----------IKPNY---ITIVGVLFACSHAGFVEDGWNH 394 (643)
Q Consensus 336 ~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~ 394 (643)
+ ...+..+..++...|++++|+++++++.... -.|+. ..+..+...+...|+.++|++.
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1 1234445556777788888888877776542 12342 2344566678889999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 395 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
++++.. ..+.+...+..+...+...|++++|++.+++. ...|| ...+..+...+...|++++|+.+++++++..|+
T Consensus 382 l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 382 ARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999987 34556788899999999999999999999987 55676 446666667788999999999999999999999
Q ss_pred Ccch
Q 045672 473 DPGT 476 (643)
Q Consensus 473 ~~~~ 476 (643)
++.+
T Consensus 460 ~~~~ 463 (765)
T PRK10049 460 DPGV 463 (765)
T ss_pred CHHH
Confidence 8743
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-15 Score=166.81 Aligned_cols=414 Identities=11% Similarity=0.003 Sum_probs=294.0
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 121 (643)
+...-..+.+.|++++|+..|++.... .|+...|..+..++.+.|++++|...+...++..+ .+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 445567888999999999999998864 67888899999999999999999999999998753 456788889999999
Q ss_pred CCChhHHHHHHccCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH-HHHHH
Q 045672 122 FSLLEEAQVLFDQMPERNV---VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR-QLHCG 197 (643)
Q Consensus 122 ~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-~~~~~ 197 (643)
.|++++|..-|......+. .....++.-+.. ..+.....+..+.. .++...+..+ ..+....... ....
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~- 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPRPAG- 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcchhh-
Confidence 9999999987765432111 111111111111 22333333333221 1111111111 1111000000 0000
Q ss_pred HHHhCCCCchhHHHHHHHHH------HHcCCHHHHHHHHhhCCCC------CcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 045672 198 IIKVGFESDVFVRSALIDIY------AKLGELRNAECVFNEMPTR------DLVVWNSIIGGFAQNSDVDEALNLYKRMK 265 (643)
Q Consensus 198 ~~~~g~~~~~~~~~~li~~y------~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 265 (643)
. ......+......++..+ ...+++++|.+.|++..+. +...|+.+...+...|++++|+..|++..
T Consensus 280 ~-~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 280 L-EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred h-hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 000000111111111111 2347899999999887642 34578888899999999999999999988
Q ss_pred HcCCCCC-HHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhH
Q 045672 266 RAGFAAD-QSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--K-DVISW 340 (643)
Q Consensus 266 ~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~ 340 (643)
+. .|+ ...+..+...+...|+++.|...+..+.+ .+.+..++..+...|...|++++|...|++..+ | +...|
T Consensus 359 ~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~ 436 (615)
T TIGR00990 359 EL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH 436 (615)
T ss_pred Hc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHH
Confidence 75 454 56788888889999999999999999999 666678999999999999999999999998854 2 56678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-H-------HH
Q 045672 341 STMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR-E-------HY 411 (643)
Q Consensus 341 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~~ 411 (643)
..+...+.+.|++++|+..|++.... .|+ ...+..+...+...|++++|...|+...+. .|+. . .+
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHH
Confidence 88889999999999999999998874 454 678888889999999999999999998762 3321 1 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 412 SCMIDLLGRAGKLQEAVKLIHEM-PYEPDA-VTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
+.....+...|++++|.+++++. ...|+. ..+..+...+...|++++|+..++++.++.+..
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 22233344579999999999886 555654 468888999999999999999999999987754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-16 Score=168.85 Aligned_cols=337 Identities=9% Similarity=-0.003 Sum_probs=225.3
Q ss_pred HHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhH
Q 045672 115 LLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191 (643)
Q Consensus 115 li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 191 (643)
++..+.+.|+.++|..+++.... .+...+..++.+....|++++|++.|+++.+. .|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~----------------- 108 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVC----------------- 108 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCC-----------------
Confidence 44555666777777777666543 23445555556666677777777777777643 333
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 045672 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268 (643)
Q Consensus 192 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 268 (643)
+...+..+...+.+.|++++|...|++... .+...|..+...+...|++++|...++.+....
T Consensus 109 --------------~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 109 --------------QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred --------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 223344566778888888888888887654 245677778888888888888888888776653
Q ss_pred CCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cC-CchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHH
Q 045672 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YD-HDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTM 343 (643)
Q Consensus 269 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~-~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~l 343 (643)
..+ ...+.. +..+...|++++|...+..+.+ .+ ++......+...+.+.|++++|...|++... .+...+..+
T Consensus 175 P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PPR-GDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCC-HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 222 222222 2346677888888888887776 22 2333444556777788888888888877643 245667777
Q ss_pred HHHHHhcCCHHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 045672 344 ISGLAQNGYSQE----ALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418 (643)
Q Consensus 344 i~~~~~~g~~~~----A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 418 (643)
...|.+.|++++ |+..|++..+. .|+ ...+..+...+...|++++|...++...+. -+.+...+..+...|
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l 328 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 888888888775 78888887764 444 556777777888888888888888887763 223455666777888
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHH
Q 045672 419 GRAGKLQEAVKLIHEM-PYEPDAVTWR-ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV 496 (643)
Q Consensus 419 ~~~g~~~~A~~~~~~m-~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 496 (643)
.+.|++++|.+.++++ ...|+...+. .+..++...|+.++|...++++++..|++. ...+++|...
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~ 396 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLA 396 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHH
Confidence 8888888888888776 3456554433 344567788888888888888888887753 2344455555
Q ss_pred HHHHHh
Q 045672 497 RKTMRA 502 (643)
Q Consensus 497 ~~~m~~ 502 (643)
+....+
T Consensus 397 ~~~~~~ 402 (656)
T PRK15174 397 LDGQIS 402 (656)
T ss_pred HHHHHH
Confidence 555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-15 Score=165.99 Aligned_cols=317 Identities=11% Similarity=0.038 Sum_probs=153.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC--C-CcchHHHHHHHHHhCC
Q 045672 78 AELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE--R-NVVSWTTMISAYCDAK 154 (643)
Q Consensus 78 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g 154 (643)
..++..+.+.|++++|..+++..+...+.+ ......++......|++++|...|+++.+ | +...|..+...+.+.|
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 334444445555555555555555543322 22222333333445555555555555443 1 2334555555555555
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 045672 155 MNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234 (643)
Q Consensus 155 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 234 (643)
++++|++.|++..+. .|+. ...+..+...|...|++++|...++.+.
T Consensus 125 ~~~~Ai~~l~~Al~l--~P~~-------------------------------~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 125 QYATVADLAEQAWLA--FSGN-------------------------------SQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred CHHHHHHHHHHHHHh--CCCc-------------------------------HHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 555555555555432 2221 1222234444455555555555544332
Q ss_pred C--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHh
Q 045672 235 T--R-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNN 310 (643)
Q Consensus 235 ~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~ 310 (643)
. | +...+..+ ..+.+.|++++|...++.+.+....++......+..++...|++++|...+..+.+ .+.+...+.
T Consensus 172 ~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 172 QEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred HhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1 1 11222222 22444555555555555554432222233333334444555555555555555555 333444555
Q ss_pred HHHHHHHhcCCHHH----HHHHHhhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 045672 311 ALLDMYCKCGSLED----AMSVFSRMIQ--K-DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFAC 382 (643)
Q Consensus 311 ~Li~~y~~~g~~~~----A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 382 (643)
.+...|...|++++ |...|++... | +...+..+...+.+.|++++|+..+++.... .|+ ......+..++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 56666666666554 5555555532 2 3445556666666666666666666666553 333 33444455556
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 383 SHAGFVEDGWNHFKSMKKFYGIDPGR-EHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 383 ~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
.+.|++++|...|+.+.+. .|+. ..+..+..++...|+.++|.+.|++.
T Consensus 329 ~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 329 RQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666666665542 2332 22333445556666666666666554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-14 Score=157.86 Aligned_cols=422 Identities=12% Similarity=0.044 Sum_probs=260.6
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCH--hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADS--VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMH 119 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 119 (643)
|...| ...++|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|...++..+... .........+...|
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly 112 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAY 112 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHH
Confidence 44444 356889999999999999875 3443 234 77788888899999999999887211 12223333345688
Q ss_pred HcCCChhHHHHHHccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHH
Q 045672 120 VKFSLLEEAQVLFDQMPE--R-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHC 196 (643)
Q Consensus 120 ~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 196 (643)
...|++++|.++|+++.+ | |...+..++..+...++.++|++.++++... .|+...+..
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~---------------- 174 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMT---------------- 174 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHH----------------
Confidence 888999999999999876 2 4566777888889999999999999998755 455444421
Q ss_pred HHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 045672 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT--R-DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273 (643)
Q Consensus 197 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 273 (643)
++..+...++..+|.+.++++.+ | +...+..+..+..+.|-...|+++..+-... +.+..
T Consensus 175 ----------------layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~ 237 (822)
T PRK14574 175 ----------------LSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEH 237 (822)
T ss_pred ----------------HHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHH
Confidence 22222223444345555555543 2 2334444555555555555555444321110 01100
Q ss_pred HH------HHHHHHHH-----hcCChh---HhHHHHHHHHhh-c---CCchhH-HhH---HHHHHHhcCCHHHHHHHHhh
Q 045672 274 ST------LTSVLRAC-----TGLALL---ELGTQVHVHVLK-Y---DHDLIL-NNA---LLDMYCKCGSLEDAMSVFSR 331 (643)
Q Consensus 274 ~t------~~~ll~a~-----~~~~~~---~~a~~i~~~~~~-~---~~~~~~-~~~---Li~~y~~~g~~~~A~~~~~~ 331 (643)
.- ....++.- ....++ +.+..-++.+.. . ++.... ..+ -+-++.+.|++.++.+.|+.
T Consensus 238 ~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~ 317 (822)
T PRK14574 238 YRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA 317 (822)
T ss_pred HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 00 00000000 011122 222222333332 1 111111 122 23455677888888888888
Q ss_pred cCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 045672 332 MIQKD----VISWSTMISGLAQNGYSQEALKLFESMKVSR-----IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402 (643)
Q Consensus 332 m~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 402 (643)
+.... ..+-.++.++|...+++++|+.+|+++.... ..++......|..++..++++++|..+++.+.+..
T Consensus 318 l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 318 MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 86432 2244567778888888888888888875532 12223334677778888888888888888887621
Q ss_pred C----------CCCC---hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045672 403 G----------IDPG---REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKIL 467 (643)
Q Consensus 403 ~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 467 (643)
. -.|+ ...+..++..+...|++.+|++.++++ ...| |...+..+.+.+...|.+.+|+..++.+.
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 1 0122 123445667777888888888888877 2223 66677777788888888888888888888
Q ss_pred hcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 468 NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 468 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
.++|++..+....+..+...|+|++|..+.+.+.+.
T Consensus 478 ~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 478 SLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 888888888888888888888888888888777654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.6e-14 Score=133.04 Aligned_cols=416 Identities=17% Similarity=0.183 Sum_probs=273.0
Q ss_pred cchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHH--ccCCHHHH-HHHHHHHHHcCCCCchhHHHHH
Q 045672 39 SSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCL--ARHAVEEA-KLVHNHVLSGGFEPETFLVNIL 115 (643)
Q Consensus 39 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 115 (643)
+++=|.++. ...+|...++.-+|+.|.+.|+..+...-..|++.-+ ...++.-+ .+-|-.|.+.|- .+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence 445566554 4567889999999999999998888776666655433 33333322 234444555443 233333
Q ss_pred HHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHH
Q 045672 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLH 195 (643)
Q Consensus 116 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 195 (643)
+.|++.+ -+|+. ..+...+|..||.+.++--..+.|.++|++-.+...+.+..+||.+|.+.+-..+ ..+.
T Consensus 191 -----K~G~vAd--L~~E~-~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-K~Lv 261 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFET-LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-KKLV 261 (625)
T ss_pred -----ccccHHH--HHHhh-cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-HHHH
Confidence 4555544 44544 4456789999999999999999999999999999899999999999987544333 4788
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHh----hCC----CCCcchHHHHHHHHHhCCChhH-HHHHHHHHHH
Q 045672 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN----EMP----TRDLVVWNSIIGGFAQNSDVDE-ALNLYKRMKR 266 (643)
Q Consensus 196 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~----~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 266 (643)
.+|+...+.||..|+|+++...++.|+++.|.+.+- +|+ +|...+|..+|..+++.++..+ |..++.+++.
T Consensus 262 ~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 262 AEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 999999999999999999999999999988776554 443 4788899999999999888755 4445555543
Q ss_pred ----cCCCC----CHHHHHHHHHHHhcCChhHhHHHHHHHHhh------cCCc---hhHHhHHHHHHHhcCCHHHHHHHH
Q 045672 267 ----AGFAA----DQSTLTSVLRACTGLALLELGTQVHVHVLK------YDHD---LILNNALLDMYCKCGSLEDAMSVF 329 (643)
Q Consensus 267 ----~g~~p----~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~------~~~~---~~~~~~Li~~y~~~g~~~~A~~~~ 329 (643)
+.++| |...|...++.|.++.+.+.|.+++..... ++++ ..-|..+.+..+.....+.-...|
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y 421 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWY 421 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333 556788999999999999999999988875 3333 245566777888888888888888
Q ss_pred hhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CH--------HH-----H
Q 045672 330 SRMIQ----KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG-FV--------ED-----G 391 (643)
Q Consensus 330 ~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~~--------~~-----a 391 (643)
+.|+. |+..+-.-++.+..-.|+++-.-++|..|+..|..-+......++.-+++.. .. .. |
T Consensus 422 ~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 422 EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 88854 3555555666777777888777778888777765444444444443333322 00 00 0
Q ss_pred HHHHHHhH----HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045672 392 WNHFKSMK----KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-------PYEPDAVTWRALLGACKVHRNTDLAI 460 (643)
Q Consensus 392 ~~~~~~~~----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~ 460 (643)
..+++... +.....-.....++..-.+.|.|+.++|.+++.-. +..|.....--++.+..+.++...|.
T Consensus 502 ad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 01111000 00012223345566666666667776666666443 22222222223344444555555555
Q ss_pred HHHHHHHh
Q 045672 461 CAAKKILN 468 (643)
Q Consensus 461 ~~~~~~~~ 468 (643)
.+++-+.+
T Consensus 582 ~~lQ~a~~ 589 (625)
T KOG4422|consen 582 EVLQLASA 589 (625)
T ss_pred HHHHHHHH
Confidence 55555543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-14 Score=148.06 Aligned_cols=467 Identities=13% Similarity=0.089 Sum_probs=343.1
Q ss_pred CCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCC--CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhH
Q 045672 34 TITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVR--ADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111 (643)
Q Consensus 34 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 111 (643)
....|++..|.|-.-|.-.|++..+..+...+...... .-..+|-.+.+++-..|+++.|...|...++.....-+..
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 45567788888999999999999999999988754311 1234578899999999999999999999888654332445
Q ss_pred HHHHHHHHHcCCChhHHHHHHccCCC--C-CcchHHHHHHHHHhCC----ChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045672 112 VNILLNMHVKFSLLEEAQVLFDQMPE--R-NVVSWTTMISAYCDAK----MNDKALELLIFMLREGVRPNMFTYSAVLRA 184 (643)
Q Consensus 112 ~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 184 (643)
+-.|..+|.+.|+++.+...|+.+.+ | +..+.-.|...|+..+ ..+.|..++.+..+.- .-|...|..+-..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 56788999999999999999998876 3 4456666666777665 3455666655555432 2344455444444
Q ss_pred Hhchhh------HHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCC-------Ccc------hHHHHH
Q 045672 185 CDSLII------LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR-------DLV------VWNSII 245 (643)
Q Consensus 185 ~~~~~~------~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------~~~------~~~~li 245 (643)
+-.... +..+...+...+-.+.+.+.|.+...+...|+++.|...|++.... |.. +--.+.
T Consensus 424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 322222 2255556677777789999999999999999999999999876432 221 112244
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHH
Q 045672 246 GGFAQNSDVDEALNLYKRMKRAGFAADQST-LTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLE 323 (643)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~ 323 (643)
..+-..++++.|.+.|..+.+. .|.-+. |.-++......+...++...+..+.. ...++.+++-+.+.|.+...+.
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 5556678999999999999885 454433 33333233345678888888998888 6777778888888999998888
Q ss_pred HHHHHHhhcC-----CCChhhHHHHHHHHH------------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 045672 324 DAMSVFSRMI-----QKDVISWSTMISGLA------------QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386 (643)
Q Consensus 324 ~A~~~~~~m~-----~~~~~~~~~li~~~~------------~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 386 (643)
.|.+-|..+. .+|+.+.-+|.+.|. ..+..++|+++|.+.++.. +-|...-+.+...++..|
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhcc
Confidence 8888666552 235555444555443 2356789999999988753 446677788888889999
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045672 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM----PYEPDAVTWRALLGACKVHRNTDLAICA 462 (643)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 462 (643)
++.+|..+|....+. ......+|-.+...|..+|++..|.++|+.. .-+.+..+.+.|..++...|.+.+|.+.
T Consensus 661 ~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred CchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999999999984 3345567888999999999999999999876 2234777889999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHc-------------------cCChhHHHHHHHHHHhCCCC
Q 045672 463 AKKILNLDPQDPGTYILLSNIYAN-------------------SQKWDEVAEVRKTMRARGIT 506 (643)
Q Consensus 463 ~~~~~~~~p~~~~~~~~l~~~~~~-------------------~g~~~~a~~~~~~m~~~g~~ 506 (643)
+..+....|.++..-..++-...+ .+..++|.++|..|...+-+
T Consensus 739 ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 739 LLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999998766655544432 34678888999999876543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-13 Score=148.10 Aligned_cols=391 Identities=14% Similarity=0.066 Sum_probs=283.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchH-HHH--HHHHHhC
Q 045672 77 YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSW-TTM--ISAYCDA 153 (643)
Q Consensus 77 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-~~l--i~~~~~~ 153 (643)
|...+. ..+.|+++.|...++++++..+.....++ .++..+...|+.++|+..+++...|+...+ ..+ ...|...
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 444443 45789999999999999987543223444 888999999999999999999987644443 333 4577888
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhC
Q 045672 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233 (643)
Q Consensus 154 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 233 (643)
|++++|+++|+++.+. .|+. ..++..++..|...++.++|++.++++
T Consensus 116 gdyd~Aiely~kaL~~--dP~n-------------------------------~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 116 KRWDQALALWQSSLKK--DPTN-------------------------------PDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred CCHHHHHHHHHHHHhh--CCCC-------------------------------HHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 9999999999999876 4442 233334778889999999999999999
Q ss_pred CCCCcchHHHHHHHHHh--CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHH-
Q 045672 234 PTRDLVVWNSIIGGFAQ--NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILN- 309 (643)
Q Consensus 234 ~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~- 309 (643)
...+......+..+|.. .++..+|++.++++.+.. +-+...+.....+..+.|....|.++...-.. +.+....+
T Consensus 163 ~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l 241 (822)
T PRK14574 163 AERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL 241 (822)
T ss_pred cccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH
Confidence 87554433334445544 566666999999999863 33566778888888999988888877665444 22221111
Q ss_pred -----hHHHHH---HH--hcCC---HHHHHHHHhhcCC-----CCh-hhH----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045672 310 -----NALLDM---YC--KCGS---LEDAMSVFSRMIQ-----KDV-ISW----STMISGLAQNGYSQEALKLFESMKVS 366 (643)
Q Consensus 310 -----~~Li~~---y~--~~g~---~~~A~~~~~~m~~-----~~~-~~~----~~li~~~~~~g~~~~A~~l~~~m~~~ 366 (643)
..++.. .. ..++ .+.|..-++.+.. |.. ..| --.+-++...|+..++++.|+.|...
T Consensus 242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 111110 00 1122 3334444444432 211 122 23456788899999999999999998
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----CCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-C----
Q 045672 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG----IDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY-E---- 437 (643)
Q Consensus 367 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~---- 437 (643)
|.+.-..+-..+..+|...+..++|..++..+....+ ..++......|.-+|..++++++|..+++++.. .
T Consensus 322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~ 401 (822)
T PRK14574 322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQV 401 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEE
Confidence 8654445788899999999999999999999876422 233455567899999999999999999988821 1
Q ss_pred -----------CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 438 -----------PDAVT-WRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 438 -----------p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
||-.. ...++..+.-.|+..+|++.++++....|.|+.....+++++...|...+|++.++.....
T Consensus 402 ~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 402 GVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred eccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 22222 3344566788999999999999999999999999999999999999999999999776643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-13 Score=131.78 Aligned_cols=442 Identities=11% Similarity=0.048 Sum_probs=305.6
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHH-HHHHHHccCCHHHHHHHHHHHHHcCCCCch----hHHHHHHHH
Q 045672 44 DDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAE-LIKCCLARHAVEEAKLVHNHVLSGGFEPET----FLVNILLNM 118 (643)
Q Consensus 44 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~ 118 (643)
.+.+.|..+..+.+|+..|+-+.+....||...+.. +...+.+.+.+.+|...+...+..-+..+- .+.+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 355677778889999999999988777787665432 335567788899999999988876433222 344555556
Q ss_pred HHcCCChhHHHHHHccCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh--------HHHHHHHHhch
Q 045672 119 HVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFT--------YSAVLRACDSL 188 (643)
Q Consensus 119 ~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--------~~~ll~a~~~~ 188 (643)
+.+.|.+++|..-|+...+ ||..+--.|+-++..-|+.++..+.|.+|..-...||..- -..++.-..+.
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 7899999999999998775 7766544555566667899999999999986543333221 12222221111
Q ss_pred hhHH-----------H-HHH--HHHHhCCCCchh-------------HH--------HHHHHHHHHcCCHHHHHHHHhhC
Q 045672 189 IILR-----------Q-LHC--GIIKVGFESDVF-------------VR--------SALIDIYAKLGELRNAECVFNEM 233 (643)
Q Consensus 189 ~~~~-----------~-~~~--~~~~~g~~~~~~-------------~~--------~~li~~y~~~g~~~~A~~~f~~~ 233 (643)
..+. . +.. .++.--+.||-. .+ -.-..-|.+.|+++.|.+++.-.
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 1111 0 000 011111122111 00 01123477889999999888877
Q ss_pred CCCCcchHHH----H-HHHHHhC-CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCch
Q 045672 234 PTRDLVVWNS----I-IGGFAQN-SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDL 306 (643)
Q Consensus 234 ~~~~~~~~~~----l-i~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~ 306 (643)
..+|..+-++ | +--|.+. .++.+|.++-+...... +-|....+.--+..-..|+++.|...+..+.. ...-+
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ 524 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT 524 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH
Confidence 7665433222 1 2223333 35666766655444321 22233222222233456899999999999887 33333
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRM---IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 383 (643)
...-.+.-.+-+.|++++|+..|-++ ...++...-.+.+.|-...+...|++++.+.... ++.|+..+..|...|-
T Consensus 525 ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 525 EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYD 603 (840)
T ss_pred HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhh
Confidence 34444555678899999999999876 3456667777888899999999999999877653 4445778888889999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCCHHHHHH
Q 045672 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLGAC-KVHRNTDLAIC 461 (643)
Q Consensus 384 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-~~~g~~~~a~~ 461 (643)
+.|+-.+|.+.+-.--+ -++-+.++...|..-|....-+++|+.+|++. -++|+..-|-.++..| ++.|++++|..
T Consensus 604 qegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred cccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 99999999888765543 35558889999999999999999999999998 4689999999999775 67899999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHccCC
Q 045672 462 AAKKILNLDPQDPGTYILLSNIYANSQK 489 (643)
Q Consensus 462 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 489 (643)
+++......|.+...+..|.+++...|.
T Consensus 682 ~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 682 LYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999988884
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.9e-12 Score=131.73 Aligned_cols=453 Identities=14% Similarity=0.137 Sum_probs=245.5
Q ss_pred CCCcchHHHHHHHHHhC--CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC---Chh
Q 045672 52 QRDLPRAMKAMHAMQCH--GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS---LLE 126 (643)
Q Consensus 52 ~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~ 126 (643)
.++|..|+.+|...+.. ..+||... .+-.++.+.++.+.|+..|...++.++ .++.++-.|.-+-.... .+.
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHH
Confidence 45666666666664432 22333321 122334455556666666655555332 11122222111111111 222
Q ss_pred HHHHHHccCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--CChhhHHHHHHHHhchhhHH-HHHHHHHH
Q 045672 127 EAQVLFDQMP---ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVR--PNMFTYSAVLRACDSLIILR-QLHCGIIK 200 (643)
Q Consensus 127 ~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~~~~~-~~~~~~~~ 200 (643)
.+..++...- ..|++..+.|.+.|.-.|++..+..+...+...... .-...|-.+-+++-..|+.+ ...-.+..
T Consensus 254 ~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3333333221 135555666666666666666666666655543210 01122333444455555555 22223333
Q ss_pred hCCCCchhHH--HHHHHHHHHcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhCC----ChhHHHHHHHHHHHcCCCC
Q 045672 201 VGFESDVFVR--SALIDIYAKLGELRNAECVFNEMPTR---DLVVWNSIIGGFAQNS----DVDEALNLYKRMKRAGFAA 271 (643)
Q Consensus 201 ~g~~~~~~~~--~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p 271 (643)
.+..+|.+++ --|..+|.+.|+++.|...|+.+... +..+...+...|+..+ ..++|..++.+..+.- +.
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~ 412 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PV 412 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cc
Confidence 3444443332 33566666777777776666665432 3344444555555543 3345555555444431 33
Q ss_pred CHHHHHHHHHHHhcCChhHhHHHHHHHHhh------cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC-------Ch-
Q 045672 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK------YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK-------DV- 337 (643)
Q Consensus 272 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~------~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-------~~- 337 (643)
|...|..+...+....- ......+..+.. ....+.+.|.+...+...|+++.|...|...... |.
T Consensus 413 d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 44555555444433322 222444444432 2344566677777777777777777777655221 11
Q ss_pred -----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 045672 338 -----ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI-TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411 (643)
Q Consensus 338 -----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 411 (643)
.+-..+...+-..++.+.|.+.|...... .|+.+ .|..++......++..+|...+..... ....++..+
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~ar 567 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNAR 567 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHH
Confidence 11122344455566777777777777663 45533 333333222334566777777777765 344555566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhcCCCCcc
Q 045672 412 SCMIDLLGRAGKLQEAVKLIHEM----PYEPDAVTWRALLGACKV------------HRNTDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~p~~~~ 475 (643)
+.+.+.+.+...+.-|.+-|+.. ...+|..+.-+|.+.|.+ .+..++|+++|.+++..+|.|..
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~y 647 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMY 647 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 66666777777777676644333 234677777777765543 34578899999999999999999
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeEEE
Q 045672 476 TYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIE 515 (643)
Q Consensus 476 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~ 515 (643)
+-+.++-+++..|++.+|..+|.++++....-.+ .|+-
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d--v~lN 685 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATSDFED--VWLN 685 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHhhCCc--eeee
Confidence 9999999999999999999999999987653222 4654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-12 Score=122.35 Aligned_cols=231 Identities=19% Similarity=0.232 Sum_probs=123.4
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 045672 40 SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMH 119 (643)
Q Consensus 40 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 119 (643)
.|+..||.++++-...+.|.+++++......+.+..+||.+|.+-+ +..++.+..+|+.....||.+|+|+++++.
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 3445555555555555555555555444444445555555544432 222244445555544555555555555555
Q ss_pred HcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH-------
Q 045672 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR------- 192 (643)
Q Consensus 120 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~------- 192 (643)
++.|+++.|++ .|++++.+|++.|+.|...+|..+|..+.+.++..
T Consensus 284 akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 284 AKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred HHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 55554444332 23445555555566666666655555555544443
Q ss_pred -HHHHHHHHhCCC----CchhHHHHHHHHHHHcCCHHHHHHHHhhCCCC-----------CcchHHHHHHHHHhCCChhH
Q 045672 193 -QLHCGIIKVGFE----SDVFVRSALIDIYAKLGELRNAECVFNEMPTR-----------DLVVWNSIIGGFAQNSDVDE 256 (643)
Q Consensus 193 -~~~~~~~~~g~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----------~~~~~~~li~~~~~~g~~~~ 256 (643)
.+...+--..+. .|..-+.+-+..+.+..+.+-|.++-.-.... ...-|..+....++....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111121 13333444455555666666665554433221 12234556666777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh
Q 045672 257 ALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK 301 (643)
Q Consensus 257 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 301 (643)
-+.+|..|.-.-.-|+..+...+++|....+.++...+++..++.
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~ 461 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE 461 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence 788888887776777778888888877777777777777666654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=142.42 Aligned_cols=251 Identities=18% Similarity=0.209 Sum_probs=110.4
Q ss_pred HHHHHHHcCCHHHHHHHHhhC-CC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 045672 213 LIDIYAKLGELRNAECVFNEM-PT----RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287 (643)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 287 (643)
+..++.+.|++++|.+++++. .. .|+..|..+.......+++++|.+.++++...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~------------------- 74 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD------------------- 74 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------------
Confidence 455555556666666655321 11 233344444444444555555555555555432
Q ss_pred hhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045672 288 LLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI--QKDVISWSTMISGLAQNGYSQEALKLFESMKV 365 (643)
Q Consensus 288 ~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 365 (643)
+.+...+..++.. ...+++++|.+++...- .++...+..++..+.+.|+++++.+++++...
T Consensus 75 ---------------~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~ 138 (280)
T PF13429_consen 75 ---------------KANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEE 138 (280)
T ss_dssp -----------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH
T ss_pred ---------------ccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 1223334455555 57788888888877663 34566777888888999999999999998775
Q ss_pred CC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHH
Q 045672 366 SR-IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEMP--YEPDAV 441 (643)
Q Consensus 366 ~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~ 441 (643)
.. .+++...|..+...+.+.|+.++|.+.+++..+. .| +......++..+...|+.+++.++++... ...|..
T Consensus 139 ~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~ 215 (280)
T PF13429_consen 139 LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD 215 (280)
T ss_dssp -T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH
Confidence 33 3456677778888889999999999999999874 45 57788889999999999999887776661 134556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
.|..+..++...|++++|+..++++....|+|+.+...+++++...|+.++|.+++++..
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 788999999999999999999999999999999999999999999999999999988764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-10 Score=111.61 Aligned_cols=456 Identities=11% Similarity=0.062 Sum_probs=312.2
Q ss_pred HHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH----HcCCCCchhHHHHHHHHHHcCC
Q 045672 48 RFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL----SGGFEPETFLVNILLNMHVKFS 123 (643)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g 123 (643)
+|++..-|+.|..++++.++. ++.+...|.+....=-..|+.+....+....+ ..|...+...|-.=...+-..|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 444445555555555555432 34455555444444444555555544443322 2344444444444444444444
Q ss_pred ChhHHHHHHccCCC------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHH---HhchhhHHH
Q 045672 124 LLEEAQVLFDQMPE------RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN-MFTYSAVLRA---CDSLIILRQ 193 (643)
Q Consensus 124 ~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a---~~~~~~~~~ 193 (643)
..-.+..+...... .--.||+.-...|.+.+.++-|..+|...++- .|. ...|...... ++....++.
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 44444444433321 12245666666777777777777777776643 332 2333333322 233333334
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 045672 194 LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFA 270 (643)
Q Consensus 194 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 270 (643)
++..++.. .+.....|-.....+-..|++..|+.++.+.-+ .+...|-+-+.....+.+++.|..+|.+... ..
T Consensus 572 llqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~s 648 (913)
T KOG0495|consen 572 LLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--IS 648 (913)
T ss_pred HHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence 44443333 233455666677777888999999988877654 2556788888888899999999999988776 45
Q ss_pred CCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHH
Q 045672 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--K-DVISWSTMISG 346 (643)
Q Consensus 271 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~ 346 (643)
|+...|.--+..---++..++|.++++..++ ++.-...|-.+...+-..++++.|+..|..-.+ | .+..|-.+...
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 6666666666666667888999999999888 776678888888999999999999988877644 3 45578888777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 045672 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 426 (643)
=-+.|+.-.|..++++....+ +-|...|...+..=.+.|+.++|..+..+..+ ..+.+...|..-|.+..+.++-..
T Consensus 729 eEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchH
Confidence 788889999999999887654 44577888888888999999999998888887 456667778888888888888666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 045672 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506 (643)
Q Consensus 427 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 506 (643)
+.+.+++.. .|..+.-++...+-....++.|..-|++++..+|++..+|..+-..+...|.-++-.++++.-... .
T Consensus 806 s~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--E 881 (913)
T KOG0495|consen 806 SIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--E 881 (913)
T ss_pred HHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--C
Confidence 666666653 456666667777888889999999999999999999999999999999999999999999877653 3
Q ss_pred cCCceeEEEE
Q 045672 507 KEPGCSWIEV 516 (643)
Q Consensus 507 ~~~~~s~~~~ 516 (643)
|.-|..|..+
T Consensus 882 P~hG~~W~av 891 (913)
T KOG0495|consen 882 PTHGELWQAV 891 (913)
T ss_pred CCCCcHHHHH
Confidence 5556677543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-09 Score=109.45 Aligned_cols=411 Identities=12% Similarity=0.086 Sum_probs=319.9
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHH
Q 045672 84 CLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKAL 160 (643)
Q Consensus 84 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 160 (643)
.....+.+.|+.++....+. ++.+.. |.-+|++..-++.|.+++++..+ .+...|.+-...--.+|+.+...
T Consensus 386 AVelE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 386 AVELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred HHhccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHH
Confidence 33455666788888877775 233333 34455666678889988887765 57778888777778889998888
Q ss_pred HHHHH----HHHCCCCCChhhHHHHHHHHhchhhHH---HHHHHHHHhCCCCc--hhHHHHHHHHHHHcCCHHHHHHHHh
Q 045672 161 ELLIF----MLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESD--VFVRSALIDIYAKLGELRNAECVFN 231 (643)
Q Consensus 161 ~~~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~---~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~ 231 (643)
++..+ +...|+..+...|..=-.+|...|..- .+....+..|++.. -.+|+.-...+.+.+.++-|+.+|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 88765 455788888888877777776666654 56666666776543 4678888888999999999999998
Q ss_pred hCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchh
Q 045672 232 EMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLI 307 (643)
Q Consensus 232 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~ 307 (643)
...+ .+...|...+..--..|..++-..+|++.... ++-.+..+.....-.-..|+...|+.++..+.. .+.+..
T Consensus 541 ~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee 619 (913)
T KOG0495|consen 541 HALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE 619 (913)
T ss_pred HHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH
Confidence 7665 36678888888777889999999999999886 333455555555666677999999999999999 666778
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 045672 308 LNNALLDMYCKCGSLEDAMSVFSRMI--QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSH 384 (643)
Q Consensus 308 ~~~~Li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 384 (643)
+|-+-+..-.....++.|+.+|.+.. .+....|.--+...--.+..++|++++++.++. -|+ ...|..+...+-+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 99999999999999999999998874 456667777677677788999999999998874 566 5667777778888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045672 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY--EPDAVTWRALLGACKVHRNTDLAICA 462 (643)
Q Consensus 385 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~ 462 (643)
.++++.|.+.|..=.+ ..+-.+..|-.|.+.=.+.|.+-.|..++++... ..+...|...|..-.+.|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 8999999988876655 3455677888899998999999999999998843 24677999999999999999999999
Q ss_pred HHHHHhcCCC------------------------------CcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 463 AKKILNLDPQ------------------------------DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 463 ~~~~~~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
..++++--|+ |+.....++.++....+++.|++.|.+..+.+
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 8888754443 34566677888888889999999998887654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-10 Score=112.08 Aligned_cols=211 Identities=17% Similarity=0.119 Sum_probs=165.8
Q ss_pred CChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045672 286 LALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFE 361 (643)
Q Consensus 286 ~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 361 (643)
.|+.-.+.+-++.+++ .+.+...|--+..+|....+.++-.+.|+...+ .|..+|..-...+.-.+++++|..=|+
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777 333444466677788888888888888887643 356677777777777888999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 045672 362 SMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD 439 (643)
Q Consensus 362 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 439 (643)
+.+. +.|+ ...|.-+-.+..+.+.++++...|++.++ .++..+++|+.....+..++++++|.+.|+.. ...|+
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9887 4554 56777777777888999999999999998 46667889999999999999999999999876 33443
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 440 ---------AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 440 ---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
..+-.+++-. .=.+++..|+.+++++++++|....+|..|+.+-.+.|+.++|.++|++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2222222222 223899999999999999999988999999999999999999999998765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9e-11 Score=122.72 Aligned_cols=332 Identities=15% Similarity=0.188 Sum_probs=208.3
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH-HHHHHHHHhCC-CCchhHHHHHHHHHHHcCCHHHHH
Q 045672 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR-QLHCGIIKVGF-ESDVFVRSALIDIYAKLGELRNAE 227 (643)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~ 227 (643)
....|+.++|.+++.+..+.. +-+...|-.+-..+-+.|+.+ .+...++...+ +.|...|..+.....+.|+++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 334499999999999998763 234455666555566666655 33333333333 334555666666666666666666
Q ss_pred HHHhhCCCCCcchH---HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCC
Q 045672 228 CVFNEMPTRDLVVW---NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDH 304 (643)
Q Consensus 228 ~~f~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 304 (643)
-.|.+..+.++.-| ---+..|-+.|+...|++.|.++.....+.|-.-+-.
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d-------------------------- 281 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED-------------------------- 281 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH--------------------------
Confidence 66665544322222 2234455556666666666666655421111111111
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------
Q 045672 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQ--K---DVISWSTMISGLAQNGYSQEALKLFESMKVSRI----------- 368 (643)
Q Consensus 305 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----------- 368 (643)
..-..+..|...++-+.|.+.++.... . +...++.++..|.+..+++.|......+.....
T Consensus 282 ---~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 282 ---LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 111234445555555666666655533 1 233566777777777777777777766655211
Q ss_pred ----------------CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHhcCCHHHHHHH
Q 045672 369 ----------------KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP--GREHYSCMIDLLGRAGKLQEAVKL 430 (643)
Q Consensus 369 ----------------~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~ 430 (643)
.++... .-+.-+..+....+....+.....+. .+.| +...|.-+.++|.+.|++.+|+++
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 222222 11222334444444444444444442 5334 567899999999999999999999
Q ss_pred HHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCc
Q 045672 431 IHEMP---YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507 (643)
Q Consensus 431 ~~~m~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 507 (643)
|..+- ...+...|--+...+...|.+++|++.|++++...|++..+-..|+.+|.+.|+.|+|.+.+..|..-+-..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 99882 223577999999999999999999999999999999999999999999999999999999999887433223
Q ss_pred CCceeE
Q 045672 508 EPGCSW 513 (643)
Q Consensus 508 ~~~~s~ 513 (643)
.+++.|
T Consensus 517 ~e~~a~ 522 (895)
T KOG2076|consen 517 AEACAW 522 (895)
T ss_pred hhhccc
Confidence 355555
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-11 Score=124.31 Aligned_cols=285 Identities=14% Similarity=0.034 Sum_probs=203.0
Q ss_pred CCChhHHHHHHccCCCC--Cc-chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHH
Q 045672 122 FSLLEEAQVLFDQMPER--NV-VSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGI 198 (643)
Q Consensus 122 ~g~~~~A~~~f~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~ 198 (643)
.|+++.|++.+...++. +. ..|-.......+.|+++.|.+.|.++.+. .|+......+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l----------------- 157 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEI----------------- 157 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHH-----------------
Confidence 68899999888876653 22 23333344457889999999999998754 4443322211
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 045672 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275 (643)
Q Consensus 199 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 275 (643)
.....+...|+++.|...++++.+ .++.....+...|.+.|++++|.+++..+.+.+..++. .
T Consensus 158 -------------~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~ 223 (398)
T PRK10747 158 -------------TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-H 223 (398)
T ss_pred -------------HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-H
Confidence 135667888999999999988765 25667888889999999999999999999987654322 2
Q ss_pred HHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCC
Q 045672 276 LTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGY 352 (643)
Q Consensus 276 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 352 (643)
...+-. ..+..++....+..+.+...++++.+++ .++.....+...+...|+
T Consensus 224 ~~~l~~-------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 224 RAMLEQ-------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHHHHH-------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCC
Confidence 211000 0112222223334455666666666643 366778888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 045672 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432 (643)
Q Consensus 353 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 432 (643)
.++|.+++++..+. .||... .++.+....++.+++.+..+...+. .+-|...+.++...+.+.|++++|.+.|+
T Consensus 279 ~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le 352 (398)
T PRK10747 279 HDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFR 352 (398)
T ss_pred HHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999888773 455422 2333444568899999999888873 44566778888999999999999999998
Q ss_pred hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 045672 433 EM-PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470 (643)
Q Consensus 433 ~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 470 (643)
.+ ...|+...+..+...+...|+.++|..++++.+.+-
T Consensus 353 ~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 353 AALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 87 667999888888899999999999999999987753
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5e-10 Score=108.74 Aligned_cols=403 Identities=13% Similarity=0.101 Sum_probs=227.9
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC--CCc-chHHHHHHH
Q 045672 73 DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE--RNV-VSWTTMISA 149 (643)
Q Consensus 73 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~-~~~~~li~~ 149 (643)
+...|..-.+.=...+++..|+.+|+.++... ..+...|-.-+.+=.++..+..|+.+|+.... |.+ ..|--.+..
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33334444444444555555555655555543 23444555555555555555555555554432 211 123333333
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 045672 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECV 229 (643)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 229 (643)
--..|+...|.++|++-.+- .|+...|++.|+.=.+-+.++.|..+
T Consensus 151 EE~LgNi~gaRqiferW~~w----------------------------------~P~eqaW~sfI~fElRykeieraR~I 196 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW----------------------------------EPDEQAWLSFIKFELRYKEIERARSI 196 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC----------------------------------CCcHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33445555555555554422 23333333444444445555555555
Q ss_pred HhhC--CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCC
Q 045672 230 FNEM--PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA-GF-AADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDH 304 (643)
Q Consensus 230 f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~ 304 (643)
+++. ..|++.+|--....--++|+...|..+|....+. |- ..+...+++...--.+...++.|.-++..++. ++.
T Consensus 197 YerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk 276 (677)
T KOG1915|consen 197 YERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK 276 (677)
T ss_pred HHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 5543 2355555555555555555555555555544432 10 01122333333333445566677777777776 443
Q ss_pred c--hhHHhHHHHHHHhcCCHHHHHHH--------HhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045672 305 D--LILNNALLDMYCKCGSLEDAMSV--------FSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371 (643)
Q Consensus 305 ~--~~~~~~Li~~y~~~g~~~~A~~~--------~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 371 (643)
+ ..+|..+...=-+-|+......+ ++.+... |-.+|--.+..-...|+.+...++|++.+.. ++|-
T Consensus 277 ~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~ 355 (677)
T KOG1915|consen 277 GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPA 355 (677)
T ss_pred ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCch
Confidence 3 34444444444444543332222 2233332 4456666666667778888888888887764 4553
Q ss_pred H-------HHHHHHHHHH---hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH----HhcCCHHHHHHHHHhC-CC
Q 045672 372 Y-------ITIVGVLFAC---SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL----GRAGKLQEAVKLIHEM-PY 436 (643)
Q Consensus 372 ~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~ 436 (643)
. ..|..+=.+| ....+++.+.++++...+ -++....++.-+--+| .|+.++..|.+++... +.
T Consensus 356 ~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~ 433 (677)
T KOG1915|consen 356 SEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK 433 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc
Confidence 1 1222222222 346778888888887776 3444555555444333 4777888888887665 66
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeE
Q 045672 437 EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSW 513 (643)
Q Consensus 437 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 513 (643)
-|..-++...|..-.+.++++....++++.++.+|.+..++...+..-...|+++.|+.+|+....+.....|...|
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 68888888888888888888888888888888888888888888888888888888888888887765544554444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-09 Score=112.33 Aligned_cols=445 Identities=14% Similarity=0.094 Sum_probs=281.2
Q ss_pred hCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHH
Q 045672 51 YQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQV 130 (643)
Q Consensus 51 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 130 (643)
-.|++++|.+++.+..+.. +.+...|.+|...|-..|+.+++...+-.+.... +.|...|..+.....+.|.+++|.-
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 3499999999999998775 5577889999999999999999988765554443 4566889999999999999999999
Q ss_pred HHccCCCCCcc---hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHH----HhchhhHH----HHHHHHH
Q 045672 131 LFDQMPERNVV---SWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRA----CDSLIILR----QLHCGII 199 (643)
Q Consensus 131 ~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a----~~~~~~~~----~~~~~~~ 199 (643)
.|.+..+.+.. .+---+..|-+.|+...|++.|.++....-+.|..-+..++.. +-..++-+ .+.+...
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99988764433 3334456788899999999999999876432222222222222 22222222 2222233
Q ss_pred HhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--------------------------------------------
Q 045672 200 KVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT-------------------------------------------- 235 (643)
Q Consensus 200 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-------------------------------------------- 235 (643)
+.+-..+...++.++.+|.+...++.|......+..
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 333444555666777777777777766655433221
Q ss_pred -----------------------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhH
Q 045672 236 -----------------------RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292 (643)
Q Consensus 236 -----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 292 (643)
.++..|..+..+|...|++.+|+.+|..+...-.--+...|..+...+-..|..+.|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 012235556677888888888888888887764445666777788888888888888
Q ss_pred HHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChh-----hH-------HHHHHHHHhcCCHHHHHHH
Q 045672 293 TQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI-----SW-------STMISGLAQNGYSQEALKL 359 (643)
Q Consensus 293 ~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~-----~~-------~~li~~~~~~g~~~~A~~l 359 (643)
.+.+..++. .+.+..+--+|...|.+.|+.++|.+++..|..+|.. .| --....+.+.|+.++=+.+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 888888888 5555666777888888888888888888887655511 11 1233456667777765555
Q ss_pred HHHHHHCC-----CCC-----------------CHHHHHHHHHHHhccCCHHHHHHHHHH-----hHHhcCCCCC--hHH
Q 045672 360 FESMKVSR-----IKP-----------------NYITIVGVLFACSHAGFVEDGWNHFKS-----MKKFYGIDPG--REH 410 (643)
Q Consensus 360 ~~~m~~~g-----~~p-----------------~~~t~~~ll~a~~~~g~~~~a~~~~~~-----~~~~~~~~p~--~~~ 410 (643)
-.+|+... +-| ...+.-.+..+-.+.++.......... .....++.-+ -..
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 55544321 111 111111222222222221111100000 0000122221 134
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCcchH
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEMP-----YEPDA---VTWRALLGACKVHRNTDLAICAAKKILNL-----DPQDPGTY 477 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~ 477 (643)
+.-++..+++.+++++|+.+...+- ..++. ..-...+.++...+++..|...++.++.. +|.....|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 5667889999999999999988771 22222 12344566788899999999999999876 66655666
Q ss_pred HHHHHHHHccCChhHHHHHH
Q 045672 478 ILLSNIYANSQKWDEVAEVR 497 (643)
Q Consensus 478 ~~l~~~~~~~g~~~~a~~~~ 497 (643)
+...+...+.|+-.-=.+.+
T Consensus 709 n~~~s~~~~~~q~v~~~R~~ 728 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLI 728 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 65556666655543333333
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-11 Score=122.29 Aligned_cols=274 Identities=12% Similarity=0.086 Sum_probs=209.4
Q ss_pred cCCHHHHHHHHhhCCCC--CcchHHHH-HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhcCChhHhHHH
Q 045672 220 LGELRNAECVFNEMPTR--DLVVWNSI-IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT--SVLRACTGLALLELGTQ 294 (643)
Q Consensus 220 ~g~~~~A~~~f~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 294 (643)
.|+++.|++.+....+. ++..+..+ .....+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999999876653 23333333 44447889999999999999874 55554333 33567788999999999
Q ss_pred HHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh-----------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 045672 295 VHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV-----------ISWSTMISGLAQNGYSQEALKLFES 362 (643)
Q Consensus 295 i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~~ 362 (643)
.++...+ .+.+..+...+...|.+.|++++|.+++..+.+... ..|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 9999999 666788899999999999999999999998864321 1333444444445556677777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-
Q 045672 363 MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDA- 440 (643)
Q Consensus 363 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~- 440 (643)
+.+. .+.+......+..++...|+.++|..++++..+. +|+.... ++.+....++.+++.+..++. +..|+.
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 6443 3456778888999999999999999999888763 4555322 233334569999999999877 445654
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 441 VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 441 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..+.++...|...+++++|.+.|+++++..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467778888999999999999999999999976 4788999999999999999999987653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-10 Score=119.04 Aligned_cols=292 Identities=13% Similarity=0.070 Sum_probs=192.8
Q ss_pred HHHHHHHH--hCCCcchHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 045672 43 LDDFTRFC--YQRDLPRAMKAMHAMQCHGVRADS-VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMH 119 (643)
Q Consensus 43 ~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 119 (643)
..+..+.. ..|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.|.+.+....+....+...+.-.....+
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 34444443 489999999999888765 3443 334555677788899999999999998765433334555568888
Q ss_pred HcCCChhHHHHHHccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHH
Q 045672 120 VKFSLLEEAQVLFDQMPE--R-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHC 196 (643)
Q Consensus 120 ~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 196 (643)
...|+++.|...++.+.+ | +...+..+...+.+.|++++|.+++..+.+.++.+. ..+..+-.
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~------------- 229 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ------------- 229 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH-------------
Confidence 899999999999999876 3 566788999999999999999999999998864332 22211100
Q ss_pred HHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 045672 197 GIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273 (643)
Q Consensus 197 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 273 (643)
..+..++..-......+...+..+..++ +++..+..+...+...|+.++|.+.+++..+. .||.
T Consensus 230 -----------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~ 296 (409)
T TIGR00540 230 -----------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDD 296 (409)
T ss_pred -----------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCc
Confidence 0111112111222334455556666654 37788888899999999999999999998885 3443
Q ss_pred HHHH-HHHHH--HhcCChhHhHHHHHHHHhh-cCCch--hHHhHHHHHHHhcCCHHHHHHHHhh--c--CCCChhhHHHH
Q 045672 274 STLT-SVLRA--CTGLALLELGTQVHVHVLK-YDHDL--ILNNALLDMYCKCGSLEDAMSVFSR--M--IQKDVISWSTM 343 (643)
Q Consensus 274 ~t~~-~ll~a--~~~~~~~~~a~~i~~~~~~-~~~~~--~~~~~Li~~y~~~g~~~~A~~~~~~--m--~~~~~~~~~~l 343 (643)
.... .++.. ....++.+.+.+..+...+ .+.+. ....++...+.+.|++++|.+.|+. . ..|+...+..+
T Consensus 297 ~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 297 RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 3210 01121 1233555666666666665 44444 4556666777777777777777772 3 24555556666
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 045672 344 ISGLAQNGYSQEALKLFESM 363 (643)
Q Consensus 344 i~~~~~~g~~~~A~~l~~~m 363 (643)
...+.+.|+.++|.++|++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 66677777777777776654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.1e-11 Score=112.95 Aligned_cols=420 Identities=14% Similarity=0.124 Sum_probs=275.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHH-HHHHHHHHcCCChhHHHHHHccCCC--C------CcchHHHHHHH
Q 045672 79 ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLV-NILLNMHVKFSLLEEAQVLFDQMPE--R------NVVSWTTMISA 149 (643)
Q Consensus 79 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~f~~m~~--~------~~~~~~~li~~ 149 (643)
.|.+-|.......+|...++-+++...-|+.-.. -.+.+.|.+...+..|.+.++.... | .+...+.+--.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 3444555666778899889888887666665332 2355678888899999998865432 1 22345666667
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH---HHHHHHHHh------------CCCCchhHHHHHH
Q 045672 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKV------------GFESDVFVRSALI 214 (643)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~---~~~~~~~~~------------g~~~~~~~~~~li 214 (643)
|.+.|+++.|+..|+...+. .|+-.+--.++-.+-..++.+ +.+..++.. .-.|+....|.-|
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 88999999999999998866 677665444444444455555 444444432 1234444333333
Q ss_pred HH-----HHHcCC--HHHH----HHHHhhCCCCCcc---hHH------------------HHHHHHHhCCChhHHHHHHH
Q 045672 215 DI-----YAKLGE--LRNA----ECVFNEMPTRDLV---VWN------------------SIIGGFAQNSDVDEALNLYK 262 (643)
Q Consensus 215 ~~-----y~~~g~--~~~A----~~~f~~~~~~~~~---~~~------------------~li~~~~~~g~~~~A~~~~~ 262 (643)
.. .-+.+. -+++ .++..-+..|+-. -|. .-...|.++|+++.|+++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 21 111111 1111 1222222223211 010 11235789999999999998
Q ss_pred HHHHcCCCCCHH--HHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhh
Q 045672 263 RMKRAGFAADQS--TLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS 339 (643)
Q Consensus 263 ~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~ 339 (643)
-+.+..-+.-.. +-.+++.-.....++..|.++-+.++. ..-+....+.-.+.-...|++++|.+.+++....|...
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc 523 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC 523 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence 887653322221 222233333334567777777666665 22222222222333446799999999999998877665
Q ss_pred HHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 340 WSTMI---SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 340 ~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
-.++. ..+-..|+.++|++.|-++..- +..+...+..+.+.|.-..+..+|++++..... -++.|+...+.|.+
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~d 600 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHH
Confidence 44443 3467789999999999887542 244566777888889889999999999877765 56668899999999
Q ss_pred HHHhcCCHHHHHHHHHh-CCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHH
Q 045672 417 LLGRAGKLQEAVKLIHE-MPYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~-m~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 494 (643)
.|-+.|+-.+|.+..-. ...- -+..+..-|..-|....-.++|+..|+++--+.|+....-..++.++.+.|++..|.
T Consensus 601 lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH
Confidence 99999999999886533 3322 355555556666777788899999999999999987666667777888999999999
Q ss_pred HHHHHHHhC
Q 045672 495 EVRKTMRAR 503 (643)
Q Consensus 495 ~~~~~m~~~ 503 (643)
++++...++
T Consensus 681 d~yk~~hrk 689 (840)
T KOG2003|consen 681 DLYKDIHRK 689 (840)
T ss_pred HHHHHHHHh
Confidence 999988654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-11 Score=123.84 Aligned_cols=272 Identities=15% Similarity=0.136 Sum_probs=153.2
Q ss_pred CHHHHHHHHhhCCC--CCc-chHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcCChhHhHHHHH
Q 045672 222 ELRNAECVFNEMPT--RDL-VVWNSIIGGFAQNSDVDEALNLYKRMKRAG--FAADQSTLTSVLRACTGLALLELGTQVH 296 (643)
Q Consensus 222 ~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 296 (643)
+..+|...|..+++ .|+ .....+..+|...+++++|.++|+...+.. ..-+...|.+++--+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45667777776554 232 233445667777777777777777766531 111344555555332111 111111
Q ss_pred -HHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045672 297 -VHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD---VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371 (643)
Q Consensus 297 -~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 371 (643)
+.+++ .+..+.+|.++.+.|.-+++.+.|.+.|++..+-| ..+|+.+..-+.....+|+|...|+..+. +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 11122 44455666666666666677777777666665433 34555555556666666666666666553 2333
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 045672 372 -YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALL 447 (643)
Q Consensus 372 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 447 (643)
...|..+...|.+.+.++.|+-.|+++.+ +.| +.....++...+.+.|+.++|+.+++++ ...| |+..---..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 33455555666666666666666666653 344 3444555556666666666676666665 2222 222222233
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..+...+++++|+..++++.++-|++...|..++.+|.+.|+.+.|..-|.-|.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 4455566666666666666666666666666666666666666666666555543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-10 Score=119.40 Aligned_cols=451 Identities=13% Similarity=0.085 Sum_probs=269.4
Q ss_pred CCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCC------------------------CCCCHhhHHHHHHHHHccCCH
Q 045672 35 ITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHG------------------------VRADSVTYAELIKCCLARHAV 90 (643)
Q Consensus 35 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------------------------~~p~~~~~~~ll~~~~~~~~~ 90 (643)
..||-+||.++|..||..|+.+.|- +|.-|+-.. -.|.+.||..|+.+|...||+
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDl 99 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDL 99 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccch
Confidence 4677799999999999999999988 776665321 145678999999999999986
Q ss_pred HH---HHHHHHHHH----HcCC-----------------CCchhHHHHHHHHHHcCCChhHHHHHHccCC----------
Q 045672 91 EE---AKLVHNHVL----SGGF-----------------EPETFLVNILLNMHVKFSLLEEAQVLFDQMP---------- 136 (643)
Q Consensus 91 ~~---a~~~~~~~~----~~g~-----------------~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---------- 136 (643)
.. .++.+..+. ..|. -||.. ..+......|-++.+.+++..+|
T Consensus 100 i~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~v 176 (1088)
T KOG4318|consen 100 ILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV 176 (1088)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH
Confidence 54 333222221 1221 12221 12222333455555555554443
Q ss_pred ------------------------CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH
Q 045672 137 ------------------------ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192 (643)
Q Consensus 137 ------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 192 (643)
.++..+|.+++..-..+|+.+.|..++.+|.+.|+..+..-|-.+|-+-....-++
T Consensus 177 fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g~~~~q~~e 256 (1088)
T KOG4318|consen 177 FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLGINAAQVFE 256 (1088)
T ss_pred HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhcCccchHHH
Confidence 16778899999999999999999999999999999999998888887744444445
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCC-----Chh-----HHHHHHH
Q 045672 193 QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS-----DVD-----EALNLYK 262 (643)
Q Consensus 193 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~~~-----~A~~~~~ 262 (643)
.+...|...|+.|+..|+.-.+-.....|....+... .+....+++-..+-+-+| +.+ -....+.
T Consensus 257 ~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k 331 (1088)
T KOG4318|consen 257 FVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTK 331 (1088)
T ss_pred HHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhh
Confidence 8888899999999999998887777776553332222 122222222222222233 111 1112222
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-----cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh
Q 045672 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-----YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV 337 (643)
Q Consensus 263 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-----~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~ 337 (643)
+..-.|+......|.. ..-....|.-+...++-..+.. .+.++..+..++.-|. .+...+..
T Consensus 332 ~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF------------rr~e~~~~ 398 (1088)
T KOG4318|consen 332 KLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF------------RRIERHIC 398 (1088)
T ss_pred HHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH------------HHHHhhHH
Confidence 2222344443333322 2222345666666666666554 2223334444444443 33322211
Q ss_pred h-hHHHHHHHHHh---cC------------CHHHHHHHHHHHHH----CCCCC-------CHHHHHHHHHHHhccCCHHH
Q 045672 338 I-SWSTMISGLAQ---NG------------YSQEALKLFESMKV----SRIKP-------NYITIVGVLFACSHAGFVED 390 (643)
Q Consensus 338 ~-~~~~li~~~~~---~g------------~~~~A~~l~~~m~~----~g~~p-------~~~t~~~ll~a~~~~g~~~~ 390 (643)
. .++ .-.+... .. +...++.-+..... .-+.| =...-+.++..|+..-+..+
T Consensus 399 ~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK 477 (1088)
T KOG4318|consen 399 SRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLK 477 (1088)
T ss_pred HHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 1111111 11 11112211111100 00111 11223445555655555566
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045672 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP-----YEPDAVTWRALLGACKVHRNTDLAICAAKK 465 (643)
Q Consensus 391 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 465 (643)
++..-+.... +-+ ...|..||+.+....+.++|..+.++.. +.-|..-+..+.+...+++....+..++++
T Consensus 478 ~l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 478 ILCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 6544444333 122 2578999999999999999999999883 223455677888889999999999999988
Q ss_pred HHhc---CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeE
Q 045672 466 ILNL---DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSW 513 (643)
Q Consensus 466 ~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 513 (643)
+.+. .|.-..+..-+.+.-...|+.+...++++-+...|+.. .+..|
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 8763 24445566778888899999999999999999988875 34455
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-09 Score=106.48 Aligned_cols=284 Identities=13% Similarity=0.122 Sum_probs=203.5
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC---CCc-chHHHHHHHHHhCCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhcC
Q 045672 213 LIDIYAKLGELRNAECVFNEMPT---RDL-VVWNSIIGGFAQNSDVDEALNLYKRMKRAGF--AADQSTLTSVLRACTGL 286 (643)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~---~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~ 286 (643)
+..+|-...+.+++..-.+.... ++. ..-+....+.-.+.++++|+.+|+++.+... --|..||+.++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 44455555556665555444433 121 1122222333445778888888888877621 11556777776554333
Q ss_pred ChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045672 287 ALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESM 363 (643)
Q Consensus 287 ~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m 363 (643)
..+.---+....+ ..-.+.+...+.+-|+-.++.++|...|++..+- ....|+.|..-|....+...|++-++..
T Consensus 313 skLs~LA~~v~~i--dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 313 SKLSYLAQNVSNI--DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHHHHh--ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 3222211111122 2233456677888889999999999999988654 4568999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHH
Q 045672 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP--YEPDAV 441 (643)
Q Consensus 364 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~ 441 (643)
++-. +-|...|-.|..+|.-.+...-|+-+|++..+ --+-|...|.+|.+.|.+.++.++|++-|.+.- -..+..
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 8843 44678999999999999999999999999876 334478899999999999999999999998872 223457
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILN-------LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
.+..|...+.+.++.++|...+++.++ .+|+...+..-|+.-+.+.+++++|..+-....
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 888999999999999999999999886 334444556668888999999999998776554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-12 Score=127.55 Aligned_cols=247 Identities=16% Similarity=0.176 Sum_probs=87.3
Q ss_pred HHHHhchhhHHHHHHHHH---HhC-CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhCCCh
Q 045672 182 LRACDSLIILRQLHCGII---KVG-FESDVFVRSALIDIYAKLGELRNAECVFNEMPTR---DLVVWNSIIGGFAQNSDV 254 (643)
Q Consensus 182 l~a~~~~~~~~~~~~~~~---~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~ 254 (643)
-..+...|+.+.....+. ... ...|...+..+.......++++.|.+.++++... ++..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 344556677774444442 222 2445666677777888899999999999999764 34456666666 788999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC-
Q 045672 255 DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI- 333 (643)
Q Consensus 255 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~- 333 (643)
++|.+++....+.. ++...+.. ++..|.+.|+++++..+++.+.
T Consensus 94 ~~A~~~~~~~~~~~--~~~~~l~~---------------------------------~l~~~~~~~~~~~~~~~l~~~~~ 138 (280)
T PF13429_consen 94 EEALKLAEKAYERD--GDPRYLLS---------------------------------ALQLYYRLGDYDEAEELLEKLEE 138 (280)
T ss_dssp -----------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH
T ss_pred cccccccccccccc--cccchhhH---------------------------------HHHHHHHHhHHHHHHHHHHHHHh
Confidence 99999987765542 33334433 3444555666666666665542
Q ss_pred ----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 045672 334 ----QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR 408 (643)
Q Consensus 334 ----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 408 (643)
..+...|..+...+.+.|+.++|++.+++..+. .|+ ......++..+...|+.+++.+++....+. .+.+.
T Consensus 139 ~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~ 214 (280)
T PF13429_consen 139 LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDP 214 (280)
T ss_dssp -T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSC
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHH
Confidence 235566777777777788888888888877764 454 556667777777778888777777777663 24555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 409 EHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
..+..+..+|...|+.++|...+++. ...| |......+..++...|+.++|..+.+++.+
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66777777788888888888887776 2234 555666677777888888888877776654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-09 Score=105.92 Aligned_cols=457 Identities=12% Similarity=0.013 Sum_probs=288.3
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 116 (643)
-+..-+-.+.+-+..+.++.-|+-+-++....+ -|+...--+.+++.-.|+.+.|..+...-.- ...|........
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~ 89 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAA 89 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHH
Confidence 344456666667777778888887777776544 4444455577788777888887776654422 235667777778
Q ss_pred HHHHcCCChhHHHHHHccCCC---------CCc-------chH-----HHHHHHHHhCCChhHHHHHHHHHHH---CCCC
Q 045672 117 NMHVKFSLLEEAQVLFDQMPE---------RNV-------VSW-----TTMISAYCDAKMNDKALELLIFMLR---EGVR 172 (643)
Q Consensus 117 ~~~~~~g~~~~A~~~f~~m~~---------~~~-------~~~-----~~li~~~~~~g~~~~A~~~~~~m~~---~g~~ 172 (643)
.++.+..++++|..++..-+. .|. ..+ +.-.+.|.-.|+.-.|++-+.+... .++.
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 888888999999999884321 110 001 1122233333444333333333221 1123
Q ss_pred CChhhHHHHHHHHhchhhHH-HHHHHHHHhC----CCCchhHHHHHHHHHHHcCCHHHHHHHHh--hC--CCCCcchHHH
Q 045672 173 PNMFTYSAVLRACDSLIILR-QLHCGIIKVG----FESDVFVRSALIDIYAKLGELRNAECVFN--EM--PTRDLVVWNS 243 (643)
Q Consensus 173 p~~~t~~~ll~a~~~~~~~~-~~~~~~~~~g----~~~~~~~~~~li~~y~~~g~~~~A~~~f~--~~--~~~~~~~~~~ 243 (643)
.|...|..+...-...--.. +-+..+.... ...+......+...+.-...-+++...-. .+ .+.++...-.
T Consensus 170 ~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~ 249 (611)
T KOG1173|consen 170 ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAE 249 (611)
T ss_pred cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHH
Confidence 34433333322111000000 1111111100 00111111111111100000000000000 00 0123344445
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCH
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSL 322 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~ 322 (643)
-..-+-..+++.+.++++....+.. ++....+..-|..+...|+...-..+-..+++ .|....+|-++.-.|.-.|+.
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCc
Confidence 5566778899999999999988753 44444454455566777776666666566666 788889999999999999999
Q ss_pred HHHHHHHhhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 045672 323 EDAMSVFSRMIQKD---VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399 (643)
Q Consensus 323 ~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 399 (643)
.+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|...++...|.++|....
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999875444 358999999999999999999998877553 11122223334445788899999999998886
Q ss_pred HhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045672 400 KFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEMP--------YEP-DAVTWRALLGACKVHRNTDLAICAAKKILNL 469 (643)
Q Consensus 400 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 469 (643)
++-| |+...+-+.-.....+.+.+|...|+..- ..+ -..+|+.|..+|++.+.+++|+..+++.+.+
T Consensus 408 ---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 408 ---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 4555 56677777666777889999999887651 111 3456788889999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 470 DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 470 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
.|.++.+|.+++-+|...|+++.|.+.|.+..-
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999988764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-10 Score=117.60 Aligned_cols=256 Identities=16% Similarity=0.151 Sum_probs=206.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC------CCcchHHHHHHHHHhCCChhHHHHHHH-HHHHcCCCCCHHHHHHHH
Q 045672 208 FVRSALIDIYAKLGELRNAECVFNEMPT------RDLVVWNSIIGGFAQNSDVDEALNLYK-RMKRAGFAADQSTLTSVL 280 (643)
Q Consensus 208 ~~~~~li~~y~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll 280 (643)
.+..-+..+|...+++++|+++|+.+.+ .+...|.+.+-.+-+ +-++..+. .+.+. -+-.+.||.++.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~-~~~sPesWca~G 428 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDT-DPNSPESWCALG 428 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhh-CCCCcHHHHHhc
Confidence 5556688899999999999999999875 366788887765533 22333332 33332 244678999999
Q ss_pred HHHhcCChhHhHHHHHHHHhhcCC-chhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHH---HHHHHHhcCCHHHH
Q 045672 281 RACTGLALLELGTQVHVHVLKYDH-DLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST---MISGLAQNGYSQEA 356 (643)
Q Consensus 281 ~a~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~~~~g~~~~A 356 (643)
+.++-+++.+.|.+.|.++++++| ...+|+.+..-+.....+|.|...|+.....|+..||+ +...|.+.++++.|
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFA 508 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHH
Confidence 999999999999999999999655 78999999999999999999999999998877776665 56789999999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 357 LKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 357 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
+-.|++..+ +.|. .+....+...+-+.|+.++|+++++++.. +.| |+..---.+..+...+++++|+..++++
T Consensus 509 e~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 509 EFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred HHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 999999987 5565 56666777788899999999999999875 333 4444444567788899999999999998
Q ss_pred -CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 435 -PYEPDAV-TWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 435 -~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
.+.|+.. ++..+...|.+.|+.+.|+.-|.-+.+++|.-
T Consensus 584 k~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 584 KELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 4557655 56666677999999999999999999999974
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-09 Score=112.43 Aligned_cols=250 Identities=11% Similarity=-0.014 Sum_probs=126.0
Q ss_pred HHHHHcCCHHHHHHHHhhCCC--CCc--chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhH
Q 045672 215 DIYAKLGELRNAECVFNEMPT--RDL--VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLE 290 (643)
Q Consensus 215 ~~y~~~g~~~~A~~~f~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 290 (643)
.++.+.|+.+.|.+.|.+..+ |+. ...-.....+.+.|++++|.+.++.+.+.. +-+......+..++...|+++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 445556666666666665422 222 122233555566666666666666666653 223344555555555666666
Q ss_pred hHHHHHHHHhh-cCCchhHH--------hHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHH
Q 045672 291 LGTQVHVHVLK-YDHDLILN--------NALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALK 358 (643)
Q Consensus 291 ~a~~i~~~~~~-~~~~~~~~--------~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 358 (643)
.+.+.+....+ ...+...+ ..+++.-......+...+.++..++ .+...+..+...+...|+.++|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 66665555555 11111111 1111111122223344444444443 366667777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh--
Q 045672 359 LFESMKVSRIKPNYITI---VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE-- 433 (643)
Q Consensus 359 l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-- 433 (643)
++++..+. .||.... ..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+.
T Consensus 285 ~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 285 IIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred HHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 77777664 3443311 1111112233555566666655554311111113444555556666666666666652
Q ss_pred C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045672 434 M-PYEPDAVTWRALLGACKVHRNTDLAICAAKKIL 467 (643)
Q Consensus 434 m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 467 (643)
. ...||...+..+...+.+.|+.++|.+++++.+
T Consensus 363 a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 363 ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 334555555555555556666666666665544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-07 Score=90.66 Aligned_cols=438 Identities=11% Similarity=0.077 Sum_probs=256.8
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 116 (643)
-++..|-..-+-=..++++..|..+|++.+.-+ ..+...|..-+.+=.+...+..|+.+++..+..-+..|. .|-.-+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHH
Confidence 356678777777777889999999999988654 346666777777777888899999999988886433333 344445
Q ss_pred HHHHcCCChhHHHHHHccCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH--
Q 045672 117 NMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR-- 192 (643)
Q Consensus 117 ~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-- 192 (643)
-+=-..|++..|+++|+.-.+ |+...|++.|..-.+.+.++.|..+|++.+- +.|+..+|.--.+--.+.|...
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 555567889999999987654 8888999999988888999999999998874 3688777766555433444333
Q ss_pred -HHHHHHHHh-CC-CCchhHHHHHHHHHHHcCCHHHHHHHHhhC----CCC-CcchHHHHHHHHHhCCChh---HHHHH-
Q 045672 193 -QLHCGIIKV-GF-ESDVFVRSALIDIYAKLGELRNAECVFNEM----PTR-DLVVWNSIIGGFAQNSDVD---EALNL- 260 (643)
Q Consensus 193 -~~~~~~~~~-g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~----~~~-~~~~~~~li~~~~~~g~~~---~A~~~- 260 (643)
.++...++. |- ..+...+.+....=.++..++.|.-+|+-. +.. ....|......--+-|+.. +++--
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 555544433 21 112334445555555666777777776433 322 1223333333333334432 22211
Q ss_pred ----HHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCch-------hHHhH---HHHHHHhcCCHHHH
Q 045672 261 ----YKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDL-------ILNNA---LLDMYCKCGSLEDA 325 (643)
Q Consensus 261 ----~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~-------~~~~~---Li~~y~~~g~~~~A 325 (643)
++.+++.+ +-|-.++-..+..-...|+.+...++++.++. ++|-. .+|-- .+-.=....+++.+
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 22233322 33455555556666666666666666666666 44421 11110 11111235566666
Q ss_pred HHHHhhcCC---CChhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 045672 326 MSVFSRMIQ---KDVISWSTM----ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398 (643)
Q Consensus 326 ~~~~~~m~~---~~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 398 (643)
+++|+...+ ....|+.-+ ..--.++.+...|.+++-..+ |.-|-..+|...+..=.+.++++.+..+++..
T Consensus 386 r~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 386 RQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666655422 223333332 222334556666666666554 34566666666666666666666666666666
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP----DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 399 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
.+- + +-+..+|......=...|+.+.|..+|+-+-.+| -...|.+.|+--...|.++.|..+++++++..+...
T Consensus 464 le~-~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 464 LEF-S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred Hhc-C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 651 1 2245556666655566666666666666552223 234566666666666666667766666666555433
Q ss_pred chHHHHHHHH
Q 045672 475 GTYILLSNIY 484 (643)
Q Consensus 475 ~~~~~l~~~~ 484 (643)
.+.+.+..-
T Consensus 542 -vWisFA~fe 550 (677)
T KOG1915|consen 542 -VWISFAKFE 550 (677)
T ss_pred -HHHhHHHHh
Confidence 555544443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.7e-09 Score=99.56 Aligned_cols=297 Identities=13% Similarity=0.058 Sum_probs=217.5
Q ss_pred HHHHHHHh--CCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 045672 44 DDFTRFCY--QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121 (643)
Q Consensus 44 ~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 121 (643)
.+..+..+ .|+|..|.++..+-.+.+-.| ...|.....+.-..|+.+.+-+.+.++.+.-..++..+.-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34555544 799999999999988776333 445777778888999999999999999887556777788888889999
Q ss_pred CCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHH
Q 045672 122 FSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGI 198 (643)
Q Consensus 122 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~ 198 (643)
.|+++.|+.-.++..+ ++.........+|.+.|++.+...+...|.+.|+--|...-..
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l------------------ 227 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL------------------ 227 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH------------------
Confidence 9999999987776554 6778899999999999999999999999999886544321110
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 045672 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275 (643)
Q Consensus 199 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 275 (643)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+-.
T Consensus 228 -------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~- 299 (400)
T COG3071 228 -------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC- 299 (400)
T ss_pred -------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH-
Confidence 112333444444444444444455666654 356677788888999999999999999988887777622
Q ss_pred HHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCC
Q 045672 276 LTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI--QKDVISWSTMISGLAQNGY 352 (643)
Q Consensus 276 ~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~ 352 (643)
.+-.+.+.++.+.-.+..+.-.+ .+.+...+.+|...|.+.+.+.+|...|+... .++..+|+-+..+|.+.|+
T Consensus 300 ---~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 300 ---RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGE 376 (400)
T ss_pred ---HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCC
Confidence 22345566666666666666665 66666778888888888888888888888663 4677788888888888888
Q ss_pred HHHHHHHHHHHHHCCCCC
Q 045672 353 SQEALKLFESMKVSRIKP 370 (643)
Q Consensus 353 ~~~A~~l~~~m~~~g~~p 370 (643)
..+|.+.+++....-..|
T Consensus 377 ~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 377 PEEAEQVRREALLLTRQP 394 (400)
T ss_pred hHHHHHHHHHHHHHhcCC
Confidence 888888887765433333
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-08 Score=99.21 Aligned_cols=405 Identities=13% Similarity=0.033 Sum_probs=264.5
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHH
Q 045672 43 LDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD-SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE-TFLVNILLNMHV 120 (643)
Q Consensus 43 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~ 120 (643)
-+.-+-|.++|.|++|++.|.+..+. .|| +.-|.....+|...|++++..+--...++.+ |+ +..+..-.+++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 33445677899999999999999875 677 6678888888889999999988888887753 43 345666667777
Q ss_pred cCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHH--------HHH-C--CCCCChhhHHHHHHHHhchh
Q 045672 121 KFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF--------MLR-E--GVRPNMFTYSAVLRACDSLI 189 (643)
Q Consensus 121 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~-~--g~~p~~~t~~~ll~a~~~~~ 189 (643)
..|++++|+. -+|-.++..+|....-..-+.+++.+ -.. . .+.|+.....+.+..+-..-
T Consensus 195 ~lg~~~eal~---------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALF---------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHH---------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 7888887753 12333444444333332233333322 111 1 23455544444443321100
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC-CHHHHHHHHhhC-------CCCC---------cchHHHHHHHHHhCC
Q 045672 190 ILRQLHCGIIKVGFESDVFVRSALIDIYAKLG-ELRNAECVFNEM-------PTRD---------LVVWNSIIGGFAQNS 252 (643)
Q Consensus 190 ~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~f~~~-------~~~~---------~~~~~~li~~~~~~g 252 (643)
...+...+-..|...-..+=..|.... .+..|...+.+- ...+ ..+.......+.-.|
T Consensus 266 -----~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g 340 (606)
T KOG0547|consen 266 -----KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKG 340 (606)
T ss_pred -----cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcC
Confidence 000000011112222222222222211 234444333221 1111 122222233345578
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhh
Q 045672 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSR 331 (643)
Q Consensus 253 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 331 (643)
+.-.|.+.|+..+.....++. .|.-+..+|....+.++..+.|..+.+ .+.+..+|..-..++.-.+++++|..=|++
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred CchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999886544433 277777888999999999999999999 666778888888888889999999999998
Q ss_pred cCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-
Q 045672 332 MIQK---DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG- 407 (643)
Q Consensus 332 m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 407 (643)
.+.- ++..|-.+..+.-+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+..++ +.|+
T Consensus 420 ai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~ 495 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPRE 495 (606)
T ss_pred HhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hcccc
Confidence 8654 4556666666667788999999999999875 444467888888899999999999999999876 3443
Q ss_pred --------hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 408 --------REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 408 --------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
+.+--+++-.- -.+++.+|.+++++. .+.|. ...+-+|...-.+.|+.++|+++|++...+-.
T Consensus 496 ~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 11122222222 238999999999988 55553 55788999999999999999999999877543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-09 Score=99.64 Aligned_cols=221 Identities=12% Similarity=0.076 Sum_probs=153.7
Q ss_pred CCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHcCCChhHH
Q 045672 52 QRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE---TFLVNILLNMHVKFSLLEEA 128 (643)
Q Consensus 52 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A 128 (643)
+.+.++|.++|.+|.+.+ +.+..+-.+|.+.+.+.|..+.|..+|+.+.++---+. ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 468999999999999754 44556677888889999999999999999987521111 12344566778899999999
Q ss_pred HHHHccCCCCC---cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCC
Q 045672 129 QVLFDQMPERN---VVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFES 205 (643)
Q Consensus 129 ~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~ 205 (643)
+.+|..+.+.. ....-.|+..|-+..+|++|++.-+++...+-++.. .-|.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~----~eIA---------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR----VEIA---------------------- 180 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch----hHHH----------------------
Confidence 99999988733 345667899999999999999999999876544332 2211
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045672 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTRD---LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282 (643)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 282 (643)
.-|..|...+....+.+.|..++.+..+.| +.+--.+...+...|++++|.+.++...+.+..--+.+...+..+
T Consensus 181 --qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 181 --QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred --HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 123345566666778888888888765533 333344566788889999999999888876533333344444444
Q ss_pred HhcCChhHhHHHHHHHHhh
Q 045672 283 CTGLALLELGTQVHVHVLK 301 (643)
Q Consensus 283 ~~~~~~~~~a~~i~~~~~~ 301 (643)
|...|+.+.+...+..+.+
T Consensus 259 Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 5555555554444444444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.4e-09 Score=100.00 Aligned_cols=254 Identities=14% Similarity=0.115 Sum_probs=200.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcC----CchhHHhHHHHHHHhc
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYD----HDLILNNALLDMYCKC 319 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~----~~~~~~~~Li~~y~~~ 319 (643)
+..++-...+.++++.-.......|++.+...-+....+.-+..++++|..+|+.+.+.. .|..+|+.++-.--.+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 344555556788888888888888877666655555666678889999999999999932 3556776665333332
Q ss_pred CCHHH-HHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHH
Q 045672 320 GSLED-AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKS 397 (643)
Q Consensus 320 g~~~~-A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 397 (643)
.++.- |..+ -.+.+--+.|..++.+-|.-.++.++|...|++.++. .|. ...|+.+..-|....+...|.+-++.
T Consensus 313 skLs~LA~~v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SKLSYLAQNV-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHH-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 22222 2222 2233334456666777888899999999999999884 455 56777788889999999999999999
Q ss_pred hHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 045672 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 398 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 475 (643)
+.+ -.+.|-..|-.|..+|.-.+...-|+-.|++. ..+| |...|.+|...|.+.++.++|+..|.+++..+..+..
T Consensus 390 Avd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 390 AVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 986 23447889999999999999999999999998 5666 7789999999999999999999999999998877788
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 476 TYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 476 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+|..|+++|.+.++.++|...+++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999988765
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.9e-10 Score=105.51 Aligned_cols=196 Identities=13% Similarity=0.020 Sum_probs=161.2
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 382 (643)
...+..+...|...|++++|...|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45567788888999999999999987743 245678888889999999999999999988754 33456777788888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 045672 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAI 460 (643)
Q Consensus 383 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 460 (643)
...|++++|.+.++...+..........+..+...+.+.|++++|.+.+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998873222234556777888999999999999999887 3334 4567888888899999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 461 CAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 461 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..++++++..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999888888888999999999999999999888764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-07 Score=95.25 Aligned_cols=435 Identities=13% Similarity=0.111 Sum_probs=268.8
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHH--HHHHH--
Q 045672 44 DDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI--LLNMH-- 119 (643)
Q Consensus 44 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~-- 119 (643)
+=+.-+.++|++++|.+...+++..+ +-|...+..-+-+..+.+.+++|..+.+. .+. ..+++. +=.+|
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHH
Confidence 34567788999999999999999765 55777788888889999999999854432 221 112222 23444
Q ss_pred HcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhchhhHHHHHHHH
Q 045672 120 VKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRP-NMFTYSAVLRACDSLIILRQLHCGI 198 (643)
Q Consensus 120 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~~~~~~ 198 (643)
-+.+..++|...++.....+..+...-...+.+.|++++|+++|+.+.+.+..- |...-..++.+-+.+ ... .+
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~-~~ 164 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ-LL 164 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH-HH
Confidence 467999999999996655565566667778899999999999999998775432 122222222221111 111 22
Q ss_pred HHhCCCCc--hhHHHHHHHHHHHcCCHHHHHHHHhhC--------CCCCc----------chHHHHHHHHHhCCChhHHH
Q 045672 199 IKVGFESD--VFVRSALIDIYAKLGELRNAECVFNEM--------PTRDL----------VVWNSIIGGFAQNSDVDEAL 258 (643)
Q Consensus 199 ~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~--------~~~~~----------~~~~~li~~~~~~g~~~~A~ 258 (643)
......|+ -..+-...-.+...|++.+|+++++.. .+.|. ..---|.-.+...|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 22222331 122222345677899999999999876 22111 11223555677889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH---HHHhcCChhHh--HHHHHH------------HHhh-cCCchhHHhHHHHHHHhcC
Q 045672 259 NLYKRMKRAGFAADQSTLTSVL---RACTGLALLEL--GTQVHV------------HVLK-YDHDLILNNALLDMYCKCG 320 (643)
Q Consensus 259 ~~~~~m~~~g~~p~~~t~~~ll---~a~~~~~~~~~--a~~i~~------------~~~~-~~~~~~~~~~Li~~y~~~g 320 (643)
+++...++.. .+|........ .+.....++-. ....++ ...+ .......-+.|+.+|. +
T Consensus 245 ~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--n 321 (652)
T KOG2376|consen 245 SIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--N 321 (652)
T ss_pred HHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--h
Confidence 9999998874 44543322221 22222221111 111111 1111 1122233345666665 4
Q ss_pred CHHHHHHHHhhcCCCC-hhhHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHH
Q 045672 321 SLEDAMSVFSRMIQKD-VISWSTMISGL--AQNGYSQEALKLFESMKVSRIKPNY--ITIVGVLFACSHAGFVEDGWNHF 395 (643)
Q Consensus 321 ~~~~A~~~~~~m~~~~-~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 395 (643)
..+.++++-...+... ...+.+++... .+.....+|.+++...-+. .|.. ......+.-....|+++.|.+++
T Consensus 322 k~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 322 KMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5667777776665433 33444444332 2233577888888777654 3443 34444555667899999999999
Q ss_pred H--------HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCCHHH
Q 045672 396 K--------SMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM--------PYEPD-AVTWRALLGACKVHRNTDL 458 (643)
Q Consensus 396 ~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~ 458 (643)
. .+.+ .+..| .+..+++.+|.+.++-+.|..++++. ...+. ..+|.-+...-.++|+.++
T Consensus 400 ~~~~~~~~ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 400 SLFLESWKSSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHhhhhhhhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 8 4444 24444 45667888898888877777776654 12222 2234444445567899999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHH
Q 045672 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKT 499 (643)
Q Consensus 459 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 499 (643)
|...++++.+..|++..+...+.-+|++. +.+.|..+-+.
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 99999999999999999999999999875 45566655443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.5e-12 Score=87.16 Aligned_cols=50 Identities=22% Similarity=0.356 Sum_probs=47.5
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLA 86 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 86 (643)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=85.05 Aligned_cols=50 Identities=38% Similarity=0.542 Sum_probs=47.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 045672 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384 (643)
Q Consensus 335 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 384 (643)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999875
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.4e-09 Score=95.57 Aligned_cols=286 Identities=14% Similarity=0.169 Sum_probs=178.0
Q ss_pred CCChhHHHHHHccCCCCCcchHH---HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHH
Q 045672 122 FSLLEEAQVLFDQMPERNVVSWT---TMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGI 198 (643)
Q Consensus 122 ~g~~~~A~~~f~~m~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~ 198 (643)
.++.++|.++|-+|.+.|..|+. +|.+.|-+.|..+.|+.+-+-+.++ || .|+.--+.+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pd-lT~~qr~lA-------------- 109 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PD-LTFEQRLLA-------------- 109 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CC-CchHHHHHH--------------
Confidence 35778888888888876655543 4667788888888888888887753 33 233322111
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 045672 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL---VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275 (643)
Q Consensus 199 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 275 (643)
.-.|..-|...|-+|.|+.+|..+.+.+. .+...|+..|-+..+|++|++.-+++.+.+-.+..+-
T Consensus 110 -----------l~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e 178 (389)
T COG2956 110 -----------LQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178 (389)
T ss_pred -----------HHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence 22366778888999999999998887433 3566788999999999999999998888765554332
Q ss_pred HHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh---hhHHHHHHHHHhcCC
Q 045672 276 LTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV---ISWSTMISGLAQNGY 352 (643)
Q Consensus 276 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~ 352 (643)
. . ..|.-|...+.-..+++.|..++.+..+.|. ..--.+...+...|+
T Consensus 179 I---A--------------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 179 I---A--------------------------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD 229 (389)
T ss_pred H---H--------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc
Confidence 1 1 1223344444445566666666665533322 222233455666777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH-H
Q 045672 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL-I 431 (643)
Q Consensus 353 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~ 431 (643)
+++|++.++...+++..--..+...|..+|.+.|+.+++..++..+.+. .++...-..+.+......-.+.|... .
T Consensus 230 y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 230 YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHH
Confidence 7777777777766543323445566677777777777777777766653 34444444444444444444444443 3
Q ss_pred HhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 045672 432 HEMPYEPDAVTWRALLGACKV---HRNTDLAICAAKKILN 468 (643)
Q Consensus 432 ~~m~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~ 468 (643)
+++.-+|+...+..++..-.. -|...+....++.|+.
T Consensus 307 ~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 307 RQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 445566777777777766432 3345555666666654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.4e-08 Score=99.31 Aligned_cols=395 Identities=15% Similarity=0.106 Sum_probs=246.6
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH
Q 045672 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSA 180 (643)
Q Consensus 104 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 180 (643)
.+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+-..|...|....|..+.+.-....-.|+..+--.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3567888888888889999999999999987764 3456799999999999999999999888765433344333322
Q ss_pred H-HHHHh-chhhHHHHHH---HHHH--hC--CCCchhHHHHHHHHHHHcC-----------CHHHHHHHHhhCCCC---C
Q 045672 181 V-LRACD-SLIILRQLHC---GIIK--VG--FESDVFVRSALIDIYAKLG-----------ELRNAECVFNEMPTR---D 237 (643)
Q Consensus 181 l-l~a~~-~~~~~~~~~~---~~~~--~g--~~~~~~~~~~li~~y~~~g-----------~~~~A~~~f~~~~~~---~ 237 (643)
+ -+.|. +.+..++..+ .++. .+ -......+..+.-+|...- ...++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 23343 3333332111 1111 11 1122333333443443221 123445555554332 3
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHH
Q 045672 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMY 316 (643)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y 316 (643)
+.+---+.--|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++..|..+.+.+.. .+.|-.....-+..-
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 2222223445667788899999888888876566777777777777888888888888888776 444322222222222
Q ss_pred HhcCCHHHHHHHHhhcC-------------------------------CCChh-hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045672 317 CKCGSLEDAMSVFSRMI-------------------------------QKDVI-SWSTMISGLAQNGYSQEALKLFESMK 364 (643)
Q Consensus 317 ~~~g~~~~A~~~~~~m~-------------------------------~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~ 364 (643)
..-++.++|......+. ..|.. ++..+..-....+ +.+..-.. |.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp 634 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LP 634 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-cC
Confidence 22344444433222210 01111 2222221111111 11000000 22
Q ss_pred HCCCCC--C------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 045672 365 VSRIKP--N------YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-P 435 (643)
Q Consensus 365 ~~g~~p--~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 435 (643)
..-+.| + ...|......+...+..++|...+.+..+ ..+-....|......+...|.+++|.+.|... -
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 222222 2 12344455677888899999888877765 23445667777778899999999999988776 5
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 436 YEPD-AVTWRALLGACKVHRNTDLAIC--AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 436 ~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+.|+ +.+..++...+.+.|+...|.. ++..+++++|.++.+|..|+.++.+.|+.++|.+.|+...+-
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 6675 4578888888999999888888 999999999999999999999999999999999999887654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.3e-09 Score=109.16 Aligned_cols=421 Identities=13% Similarity=0.067 Sum_probs=224.1
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCC
Q 045672 60 KAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERN 139 (643)
Q Consensus 60 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 139 (643)
.++-.+...|+.|+..||.+++.-|+..|+.+.|- +|..|.....+.+..+++.++......|+.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46778888999999999999999999999999998 9999998888888899999999999999888776 788
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHH-HH-------HCCCCCChhhHHHHHHHHhchh-hHH---------HHHHHHHHh
Q 045672 140 VVSWTTMISAYCDAKMNDKALELLIF-ML-------REGVRPNMFTYSAVLRACDSLI-ILR---------QLHCGIIKV 201 (643)
Q Consensus 140 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~a~~~~~-~~~---------~~~~~~~~~ 201 (643)
..+|+.|..+|.+.|+... ++..++ |. ..|+--...-|-..++.|...- +.. .+++..++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999765 333333 22 1233222222322333332211 110 223333332
Q ss_pred C------------------------------------C-CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCc----ch
Q 045672 202 G------------------------------------F-ESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL----VV 240 (643)
Q Consensus 202 g------------------------------------~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~----~~ 240 (643)
+ . .|+..++.++++.-...|+++.|..++.+|.++.. .-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 2 1 24444555555555555555555555555554321 11
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcC
Q 045672 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCG 320 (643)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g 320 (643)
|-.++-+ .++...+..+++-|.+.|+.|+..|+..-+-.+...|....+... .+....+++-+..-+-.|
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-------sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-------SQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-------cchhhhhhHHHHHHHhcc
Confidence 1222222 444455555555555555555555555555444443332222111 111111111111111122
Q ss_pred CHHHHHHHHhh---------c-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC-HHHHHHHHHH
Q 045672 321 SLEDAMSVFSR---------M-------IQKDVISWSTMISGLAQNGYSQEALKLFESMKVS--RIKPN-YITIVGVLFA 381 (643)
Q Consensus 321 ~~~~A~~~~~~---------m-------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~-~~t~~~ll~a 381 (643)
..|.+.++. . .+.....|...+. ...+|+.++..++-..|..- ...|+ ...|..++.-
T Consensus 312 --~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq 388 (1088)
T KOG4318|consen 312 --LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ 388 (1088)
T ss_pred --cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH
Confidence 111111111 1 1112233433332 23356666666655555321 11221 2233333332
Q ss_pred Hhcc----------------------CCHHHHHHHHHHhHHh---------------cCCCC-------ChHHHHHHHHH
Q 045672 382 CSHA----------------------GFVEDGWNHFKSMKKF---------------YGIDP-------GREHYSCMIDL 417 (643)
Q Consensus 382 ~~~~----------------------g~~~~a~~~~~~~~~~---------------~~~~p-------~~~~~~~li~~ 417 (643)
|.+. ....+..+......+. ..+.| -...-+.++-.
T Consensus 389 yFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 2211 1111111111111000 00000 01112334444
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHccCChhHHH
Q 045672 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ---DPGTYILLSNIYANSQKWDEVA 494 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~ 494 (643)
+.+.-+..+++...+.....-=...|..|+.-|..+...+.|....++....+.. +..-+..+.+...+.+...++.
T Consensus 469 l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ 548 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLS 548 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHH
Confidence 4444455555433333210001145788999999999999999999988765422 4457889999999999999999
Q ss_pred HHHHHHHh
Q 045672 495 EVRKTMRA 502 (643)
Q Consensus 495 ~~~~~m~~ 502 (643)
.+.+.|++
T Consensus 549 tiL~e~ks 556 (1088)
T KOG4318|consen 549 TILYEDKS 556 (1088)
T ss_pred HHHhhhhH
Confidence 99999987
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-07 Score=93.18 Aligned_cols=453 Identities=12% Similarity=0.095 Sum_probs=262.6
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHhC-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 045672 40 SSLLDDFTRFCYQRDLPRAMKAMHAMQCH-GVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118 (643)
Q Consensus 40 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 118 (643)
..|-..+..+..+|+.......|...+.. .+.-....|...++.....+-++.+..++...++.. +...+--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHH
Confidence 45777777777788888888888776643 222234456777777777777777888887776643 2234556667
Q ss_pred HHcCCChhHHHHHHccCCC--------------------------C--------------------C--cchHHHHHHHH
Q 045672 119 HVKFSLLEEAQVLFDQMPE--------------------------R--------------------N--VVSWTTMISAY 150 (643)
Q Consensus 119 ~~~~g~~~~A~~~f~~m~~--------------------------~--------------------~--~~~~~~li~~~ 150 (643)
+++.+++++|.+.+..+.. | | ...|++|...|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 7777777777776665531 1 1 13599999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH--HHHHHHHHhCC-------------------------
Q 045672 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR--QLHCGIIKVGF------------------------- 203 (643)
Q Consensus 151 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~--~~~~~~~~~g~------------------------- 203 (643)
.+.|.+++|.++|++.... .....-|+.+.++++...... ...+.....+.
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 9999999999999998765 445556777777776544332 11110000111
Q ss_pred ---------CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-------CC--cchHHHHHHHHHhCCChhHHHHHHHHHH
Q 045672 204 ---------ESDVFVRSALIDIYAKLGELRNAECVFNEMPT-------RD--LVVWNSIIGGFAQNSDVDEALNLYKRMK 265 (643)
Q Consensus 204 ---------~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 265 (643)
+-++..|..-+..| .|+..+-..+|.+... +. -..|..+...|-.+|+.+.|..+|.+..
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 11111222222111 2333333333333211 11 1246666677777777777777777665
Q ss_pred HcCCCCC---HHHHHHHHHHHhcCChhHhHHHHHHHHhhcCC-------------------chhHHhHHHHHHHhcCCHH
Q 045672 266 RAGFAAD---QSTLTSVLRACTGLALLELGTQVHVHVLKYDH-------------------DLILNNALLDMYCKCGSLE 323 (643)
Q Consensus 266 ~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-------------------~~~~~~~Li~~y~~~g~~~ 323 (643)
+...+-- ..+|..-...-.+..+++.|..+.+.+..++. +..+|..+++.--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 5322211 12222222223344556666666655543111 1234444455555566677
Q ss_pred HHHHHHhhcCCCChhhHHHHHH---HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh---ccCCHHHHHHHHH
Q 045672 324 DAMSVFSRMIQKDVISWSTMIS---GLAQNGYSQEALKLFESMKVSRIKPNY-ITIVGVLFACS---HAGFVEDGWNHFK 396 (643)
Q Consensus 324 ~A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~---~~g~~~~a~~~~~ 396 (643)
....+++++.+--+.|=..+++ -+-.+.-++++.++|++-+..=-.|+. ..|+..|.-+. ....++.|+.+|+
T Consensus 495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7777777665433332222221 123455677777777765443234553 24444443332 2347899999999
Q ss_pred HhHHhcCCCCChH--HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 045672 397 SMKKFYGIDPGRE--HYSCMIDLLGRAGKLQEAVKLIHEMP--YEPD--AVTWRALLGACKVHRNTDLAICAAKKILNLD 470 (643)
Q Consensus 397 ~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 470 (643)
...+ +.+|... .|-.....=.+-|....|++++++.. .++. ...||..|.-....=-+..-..+|+++++.-
T Consensus 575 qaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L 652 (835)
T KOG2047|consen 575 QALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL 652 (835)
T ss_pred HHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC
Confidence 9988 6666432 23333333345688889999999883 3332 3468888765444434556778899999988
Q ss_pred CCCc--chHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 471 PQDP--GTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 471 p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
|++- ......+++-.+.|..+.|+.++..-.+
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 8643 2344567777899999999999976544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-07 Score=89.18 Aligned_cols=364 Identities=12% Similarity=0.018 Sum_probs=229.8
Q ss_pred chhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHH-HhCC-Ch-hH-------------HHHHHHHHHHCC-
Q 045672 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAY-CDAK-MN-DK-------------ALELLIFMLREG- 170 (643)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~-~~~g-~~-~~-------------A~~~~~~m~~~g- 170 (643)
+...-...+.+|...++-+.|.....+.+..-...-+.|+.+. -+.| +. ++ |++.+.-..+.+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 3344455677777778888888888877764333333333332 2222 11 11 222222222222
Q ss_pred --------------CCCChhhHHHHHHHHhchhhHH-----HHHHHHHH-hCCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 045672 171 --------------VRPNMFTYSAVLRACDSLIILR-----QLHCGIIK-VGFESDVFVRSALIDIYAKLGELRNAECVF 230 (643)
Q Consensus 171 --------------~~p~~~t~~~ll~a~~~~~~~~-----~~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 230 (643)
+.|...+...-+.+++..-..+ +....+.. .-++.|+....++.+.|...|+.++|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 2233333333344433221111 22222222 245667888899999999999999999999
Q ss_pred hhCCCCCcchHHH---HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCch
Q 045672 231 NEMPTRDLVVWNS---IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDL 306 (643)
Q Consensus 231 ~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~ 306 (643)
++...-|+.+... ..-.+.+.|+.++...+...+.... +-+...|..-+...-...+++.|..+-+..++ .+.+.
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~ 334 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH 334 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc
Confidence 8876544433332 2334567788888888877776532 12222232223333445667777777666666 33344
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcC--C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMI--Q-KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL-FAC 382 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~ 382 (643)
..+-.-...+...|+.++|.-.|+... . -+..+|.-++..|...|++.+|.-+-+...+. +..+..++..+. ..|
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL 413 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence 444444466677899999999998763 3 36789999999999999999998877765443 334455554442 233
Q ss_pred h-ccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHH
Q 045672 383 S-HAGFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLGACKVHRNTDLA 459 (643)
Q Consensus 383 ~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a 459 (643)
. ....-++|..++++-.+ +.|+ ....+.+...+.+.|+.+++..++++. ...||...-+.|...+...+.+++|
T Consensus 414 ~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred ccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHH
Confidence 2 33345778888877654 4665 445677788888999999999999876 5668999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcch
Q 045672 460 ICAAKKILNLDPQDPGT 476 (643)
Q Consensus 460 ~~~~~~~~~~~p~~~~~ 476 (643)
+..|..++.++|++..+
T Consensus 491 m~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 491 MEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHhcCccchHH
Confidence 99999999999987543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.9e-09 Score=105.51 Aligned_cols=230 Identities=15% Similarity=0.161 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHhcCChhHhHHHHHHHHhhc--------CCchh-HHhHHHHHHHhcCCHHHHHHHHhhcCC---------
Q 045672 273 QSTLTSVLRACTGLALLELGTQVHVHVLKY--------DHDLI-LNNALLDMYCKCGSLEDAMSVFSRMIQ--------- 334 (643)
Q Consensus 273 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--------~~~~~-~~~~Li~~y~~~g~~~~A~~~~~~m~~--------- 334 (643)
..|...+...|...|+++.|...++.+.+. .+.+. ..+.+...|...+++.+|..+|+++..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666777888888888888888888772 33332 234577888899999999888887721
Q ss_pred -C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--
Q 045672 335 -K-DVISWSTMISGLAQNGYSQEALKLFESMKV-----SRI-KPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYG-- 403 (643)
Q Consensus 335 -~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 403 (643)
+ -..+++.|..+|.+.|++++|...+++..+ .|. .|. ..-++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 234678888889999999998888876532 122 222 23455667788899999999999887766443
Q ss_pred CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC-------CC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045672 404 IDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM-------PY--EPD-AVTWRALLGACKVHRNTDLAICAAKKILNL 469 (643)
Q Consensus 404 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 469 (643)
..++ ..+++.|...|...|++++|.++++++ .. .+. ...++.|..+|.+.+++++|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 357999999999999999999999876 11 222 346777888899999999999999988753
Q ss_pred ----CCCC---cchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 470 ----DPQD---PGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 470 ----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+|+. ..+|..|+.+|...|++++|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4444 45788999999999999999999988863
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.5e-08 Score=97.18 Aligned_cols=440 Identities=12% Similarity=0.013 Sum_probs=286.5
Q ss_pred CCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH--HHcCCCCchhH-
Q 045672 35 ITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHV--LSGGFEPETFL- 111 (643)
Q Consensus 35 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~g~~~~~~~- 111 (643)
..|+-.-| +.+++.-.|++++|..+...-.-. +.|..+......++.+...+++|..++... ....+.-+..+
T Consensus 47 ~dp~d~~~--~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~ 122 (611)
T KOG1173|consen 47 NDPADIYW--LAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA 122 (611)
T ss_pred CChHHHHH--HHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh
Confidence 33444444 677888889999998888765432 457777778888888888999998888722 00011111111
Q ss_pred --------------HHHHH-------HHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhC-CChhHHHHHHHHHHHC
Q 045672 112 --------------VNILL-------NMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA-KMNDKALELLIFMLRE 169 (643)
Q Consensus 112 --------------~~~li-------~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 169 (643)
.+.-. ..|......++|+..|.+....|+..+.++...-... =..++-.++|+.+.-.
T Consensus 123 ~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a 202 (611)
T KOG1173|consen 123 ANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLA 202 (611)
T ss_pred hceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHH
Confidence 01111 1233334456666666655555555444433221110 0011222222211000
Q ss_pred -CCCCChhhHHHHHHHH-hchhhHH-H-HHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCc---chHH
Q 045672 170 -GVRPNMFTYSAVLRAC-DSLIILR-Q-LHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDL---VVWN 242 (643)
Q Consensus 170 -g~~p~~~t~~~ll~a~-~~~~~~~-~-~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~ 242 (643)
-.+-+....-.+.... .+..+.. . .-....-.+..-+..+.....+-+...+++.+..++++.+.+.|+ ..+.
T Consensus 203 ~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~ 282 (611)
T KOG1173|consen 203 MLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLP 282 (611)
T ss_pred hhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHH
Confidence 0011122222222111 0000000 0 000011123455666667777888899999999999999887544 4666
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCC
Q 045672 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGS 321 (643)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~ 321 (643)
.-|..+...|+..+-..+=.+|.+. .+-.+.+|-++..-|...|...+|++.+..+.. .+.-...|-.+...|+-.|.
T Consensus 283 ~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~E 361 (611)
T KOG1173|consen 283 LHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGE 361 (611)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcch
Confidence 7788899999999988888888886 355678999999989999999999999999998 44445788899999999999
Q ss_pred HHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHH
Q 045672 322 LEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKS 397 (643)
Q Consensus 322 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 397 (643)
.++|...+....+ ..-..+--+..-|.+.+..+.|.+.|.+... +.|+ +...+-+.-...+.+.+.+|..+|+.
T Consensus 362 hdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 362 HDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHH
Confidence 9999888765522 1111222345568888999999999998876 5565 56666666566678899999999998
Q ss_pred hHHhc-CCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 045672 398 MKKFY-GIDP----GREHYSCMIDLLGRAGKLQEAVKLIHEM-P-YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470 (643)
Q Consensus 398 ~~~~~-~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 470 (643)
....- .+.+ ...+++.|..+|.+.+++++|+..+++. . .+.|..++.++.-.+...|+++.|...|.+++.+.
T Consensus 440 ~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 440 ALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 77310 1111 3446888999999999999999999987 2 33477788888888999999999999999999999
Q ss_pred CCCcchHHHHH
Q 045672 471 PQDPGTYILLS 481 (643)
Q Consensus 471 p~~~~~~~~l~ 481 (643)
|++..+-..|.
T Consensus 520 p~n~~~~~lL~ 530 (611)
T KOG1173|consen 520 PDNIFISELLK 530 (611)
T ss_pred CccHHHHHHHH
Confidence 99865544444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-08 Score=94.68 Aligned_cols=283 Identities=14% Similarity=0.087 Sum_probs=178.8
Q ss_pred CCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHH
Q 045672 122 FSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGI 198 (643)
Q Consensus 122 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~ 198 (643)
.|++..|+++..+-.+ .....|..-+.+--+.|+.+.+-.++.+..+. .+|
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~--~~~------------------------ 150 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL--AGD------------------------ 150 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc--CCC------------------------
Confidence 4777777777765443 22334444555566667777777777766543 112
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 045672 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP---TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST 275 (643)
Q Consensus 199 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 275 (643)
++..+.-+........|+++.|..-.++.. .+++........+|.+.|++.+...++..|.+.|.--|+..
T Consensus 151 ------~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 151 ------DTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred ------chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 233333445666777888888887776544 45778888899999999999999999999998886555432
Q ss_pred HHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCC
Q 045672 276 LTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGY 352 (643)
Q Consensus 276 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 352 (643)
-.. ...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+
T Consensus 225 ~~l--------------------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~ 278 (400)
T COG3071 225 ARL--------------------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGD 278 (400)
T ss_pred HHH--------------------------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCC
Confidence 110 112233444433333334443444555432 245555566666777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 045672 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432 (643)
Q Consensus 353 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 432 (643)
.++|.++..+..+.+..|+. ..+-.+.+.++...-++..+...+.++..| ..+.+|...|.+.+.+.+|.+.|+
T Consensus 279 ~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 279 HDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred hHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777777776666652 222345566666666666666665434333 566677777777777777777777
Q ss_pred hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 433 EM-PYEPDAVTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 433 ~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
.. +.+|+..+|+-+..++.+.|+.++|.+..++.+.
T Consensus 353 aAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 353 AALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 65 5667777777777777777777777777777664
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-08 Score=110.32 Aligned_cols=259 Identities=11% Similarity=0.003 Sum_probs=185.2
Q ss_pred CcchHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHh---------cCChhHhHHHHHHHHhh
Q 045672 237 DLVVWNSIIGGFAQ-----NSDVDEALNLYKRMKRAGFAAD-QSTLTSVLRACT---------GLALLELGTQVHVHVLK 301 (643)
Q Consensus 237 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~---------~~~~~~~a~~i~~~~~~ 301 (643)
+...|...+.+-.. .+..++|+++|++..+. .|+ ...+..+..++. ..++++.|...++.+.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555555321 23467999999998874 554 344444443332 33558899999999999
Q ss_pred -cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHH
Q 045672 302 -YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--K-DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI-TIV 376 (643)
Q Consensus 302 -~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~ 376 (643)
.+.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+.
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~ 410 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGI 410 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHH
Confidence 566778888899999999999999999998744 3 4567888899999999999999999999885 45532 333
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHc
Q 045672 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAV-TWRALLGACKVH 453 (643)
Q Consensus 377 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~ 453 (643)
.++..+...|++++|...++++.+. .+| +...+..+...|...|++++|.+.+.++ +..|+.. .++.+...+...
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 3444566789999999999998763 234 4556777888899999999999999887 4445544 445555556777
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 454 RNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 454 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
| +.|...++++++..-..+.....+...|.-.|+-+.+..+ +++.+.|
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7 4788878887764322222223377778888888888777 7777654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-06 Score=89.06 Aligned_cols=423 Identities=13% Similarity=0.122 Sum_probs=269.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhC
Q 045672 75 VTYAELIKCCLARHAVEEAKLVHNHVLSGGF-EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153 (643)
Q Consensus 75 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 153 (643)
..|..-+..+..+|++..-+..|+..+..=+ .....+|...+......|-.+.+..++++-.+-++..-+--|..++..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3466667777888999999999998887521 222346777778777888888999999998887778888899999999
Q ss_pred CChhHHHHHHHHHHHCC------CCCChhhHHHHHHHHhchhhHH--HHHHHHHHhCC--CCc--hhHHHHHHHHHHHcC
Q 045672 154 KMNDKALELLIFMLREG------VRPNMFTYSAVLRACDSLIILR--QLHCGIIKVGF--ESD--VFVRSALIDIYAKLG 221 (643)
Q Consensus 154 g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~~~~~--~~~~~~~~~g~--~~~--~~~~~~li~~y~~~g 221 (643)
+++++|-+.+...+... .+-+...|.-+....++..+.- --.+.+++.|+ -+| ...|++|.+-|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 99999999998876431 2334445555555444443332 11222333333 233 468999999999999
Q ss_pred CHHHHHHHHhhCCCC--CcchHHHHHHHHHh----------------CCC------hhHHHHHHHHHHHcCC--------
Q 045672 222 ELRNAECVFNEMPTR--DLVVWNSIIGGFAQ----------------NSD------VDEALNLYKRMKRAGF-------- 269 (643)
Q Consensus 222 ~~~~A~~~f~~~~~~--~~~~~~~li~~~~~----------------~g~------~~~A~~~~~~m~~~g~-------- 269 (643)
.++.|..+|++.... .+.-++.+..+|++ .|+ ++-.+.-|+.+...+.
T Consensus 263 ~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred hhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999886542 22233333333332 111 2223333443333210
Q ss_pred ---CCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCc------hhHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh--
Q 045672 270 ---AADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHD------LILNNALLDMYCKCGSLEDAMSVFSRMIQKDV-- 337 (643)
Q Consensus 270 ---~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~------~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~-- 337 (643)
+.+..++..-+. ...|+..+-...+..+++ +.|. ...|..+.+.|-..|+++.|+.+|++..+-+-
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 111122222221 223555666677777777 4443 35778899999999999999999999865432
Q ss_pred -----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----------C-CH------HHHHHHHHHHhccCCHHHHHHHH
Q 045672 338 -----ISWSTMISGLAQNGYSQEALKLFESMKVSRIK----------P-NY------ITIVGVLFACSHAGFVEDGWNHF 395 (643)
Q Consensus 338 -----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----------p-~~------~t~~~ll~a~~~~g~~~~a~~~~ 395 (643)
..|-.-...=.++.+++.|+++.+.....--. | -. ..|...+..--..|-++....++
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 24555555566788999999998877542111 1 11 12222333333446666777777
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CC-CCHH-HHHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 045672 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-P-YE-PDAV-TWRALLGACKV---HRNTDLAICAAKKILN 468 (643)
Q Consensus 396 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~-p~~~-~~~~ll~~~~~---~g~~~~a~~~~~~~~~ 468 (643)
+.+..-.-..|- ........+-....++++.+++++- + ++ |++. .|++.+.-+.+ ....+.|..+|+++++
T Consensus 501 driidLriaTPq--ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 501 DRIIDLRIATPQ--IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHhcCCHH--HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 777663122232 2222333455667789999999886 2 22 5554 79988876543 2378999999999999
Q ss_pred cCCCCc--chHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 469 LDPQDP--GTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 469 ~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
.-|+.. ..|...+..-.+-|....|..++++..
T Consensus 579 ~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 579 GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 887532 244445555566788888888888854
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-07 Score=85.87 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=67.3
Q ss_pred HHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCh
Q 045672 46 FTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL 125 (643)
Q Consensus 46 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 125 (643)
+.-+..+.++..|+.+++.-...+-.....+-.-+..++...|++++|...+..+.... .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 56677788999999999877654422222333445566678999999999999887754 56677777777777778899
Q ss_pred hHHHHHHccCCC
Q 045672 126 EEAQVLFDQMPE 137 (643)
Q Consensus 126 ~~A~~~f~~m~~ 137 (643)
.+|..+-.+.++
T Consensus 108 ~eA~~~~~ka~k 119 (557)
T KOG3785|consen 108 IEAKSIAEKAPK 119 (557)
T ss_pred HHHHHHHhhCCC
Confidence 999988877764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-08 Score=94.39 Aligned_cols=196 Identities=14% Similarity=0.123 Sum_probs=111.6
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHH
Q 045672 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYC 317 (643)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~ 317 (643)
...+..+...+...|++++|.+.+++..+.. +.+...+..+ ...|.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l---------------------------------a~~~~ 76 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLAL---------------------------------ALYYQ 76 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH---------------------------------HHHHH
Confidence 3567777788888888888888888877642 2233344444 44444
Q ss_pred hcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHH
Q 045672 318 KCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWN 393 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 393 (643)
..|++++|.+.|++..+ .+...+..+...+...|++++|++.|++.......| ....+..+...+...|++++|..
T Consensus 77 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 77 QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555544421 233345555555566666666666666655432112 22344445555666666666666
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045672 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY-EPDAVTWRALLGACKVHRNTDLAICAAKKILNL 469 (643)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 469 (643)
.+....+. .+.+...+..+...+...|++++|.+.+++. .. ..+...+..+...+...|+.+.|....+.+...
T Consensus 157 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 157 YLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 66666552 2223445666666666677777776666654 11 223444555555666667777777666665544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4e-08 Score=101.09 Aligned_cols=233 Identities=21% Similarity=0.225 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCCC----------Ccc-hHHHHHHHHHhCCChhHHHHHHHHHHHc---CCCCC
Q 045672 207 VFVRSALIDIYAKLGELRNAECVFNEMPTR----------DLV-VWNSIIGGFAQNSDVDEALNLYKRMKRA---GFAAD 272 (643)
Q Consensus 207 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~ 272 (643)
..+...|..+|...|+++.|..+|+...+. .+. ..+.+...|...+++++|..+|+++... ..-++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455566888899999999999888765431 111 2334556677778888888877777542 11111
Q ss_pred HHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC----------CCChh-hHH
Q 045672 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI----------QKDVI-SWS 341 (643)
Q Consensus 273 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~----------~~~~~-~~~ 341 (643)
...+ ..+++.|...|.+.|++++|...+++.. .+.+. .++
T Consensus 279 h~~v-----------------------------a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 279 HPAV-----------------------------AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred CHHH-----------------------------HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 1111 1233445555666666655555554431 12222 355
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-CCC-Ch
Q 045672 342 TMISGLAQNGYSQEALKLFESMKV---SRIKPN----YITIVGVLFACSHAGFVEDGWNHFKSMKKFY----G-IDP-GR 408 (643)
Q Consensus 342 ~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p-~~ 408 (643)
.++..+...+++++|..+++...+ .-+.++ ..+++.+...|.+.|++++|.++|+++.... + ..+ ..
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 566777788888888888876533 112333 3578888888999999999999998887642 1 112 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 409 EHYSCMIDLLGRAGKLQEAVKLIHEM--------PYEPDA-VTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
..++-|...|.+.+++.+|.++|.+. +..|++ .+|..|...|...|+++.|+++.+.+..
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 46778888899999999888888765 334554 4799999999999999999999999874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-08 Score=107.34 Aligned_cols=210 Identities=13% Similarity=0.049 Sum_probs=162.5
Q ss_pred ChhHhHHHHHHHHhhcCC-chhHHhHHHHHHH---------hcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCH
Q 045672 287 ALLELGTQVHVHVLKYDH-DLILNNALLDMYC---------KCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYS 353 (643)
Q Consensus 287 ~~~~~a~~i~~~~~~~~~-~~~~~~~Li~~y~---------~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 353 (643)
++++.|...++.+.+..| +...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 457899999999999444 4556666665554 23458899999998854 3567888888889999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHH
Q 045672 354 QEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR-EHYSCMIDLLGRAGKLQEAVKLI 431 (643)
Q Consensus 354 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 431 (643)
++|+..|++..+. .|+ ...+..+..++...|++++|...++...+. .|+. ..+..+...+...|++++|.+.+
T Consensus 355 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 355 IVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999885 455 566777888899999999999999999873 4542 23334455577789999999999
Q ss_pred HhCC--CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 432 HEMP--YEPDA-VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 432 ~~m~--~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
++.- ..|+. ..+..+..++...|+.++|...++++....|.+......+...|...| ++|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 8872 23544 446666677889999999999999998888887777888888888888 5888888877653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8e-09 Score=95.94 Aligned_cols=229 Identities=13% Similarity=0.054 Sum_probs=160.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcC
Q 045672 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCG 320 (643)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g 320 (643)
+.|..+|.+.|.+.+|.+.|+.-.+. .|-..||..+-.+|.+....+.|..++..... ++.++.........+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 45778888888888888888877775 45556676677777777777777777777666 5556555566666666677
Q ss_pred CHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 045672 321 SLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397 (643)
Q Consensus 321 ~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 397 (643)
+.++|.++++...+. ++.+.-++..+|.-.++++-|+..|+++.+-|+ -+...|..+.-+|.-.+.+|-++.-|..
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 777777777666432 444555555666667777777777777777663 3445566666666666666666555554
Q ss_pred hHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 045672 398 MKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477 (643)
Q Consensus 398 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 477 (643)
.... ..+.++| ..+|-.+-......||+..|.+.|+-++..+|++..++
T Consensus 384 Alst-------------------at~~~~a------------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~eal 432 (478)
T KOG1129|consen 384 ALST-------------------ATQPGQA------------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEAL 432 (478)
T ss_pred HHhh-------------------ccCcchh------------hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHH
Confidence 4331 1111111 23566565556678999999999999999999999999
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 478 ILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 478 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+.|+-.-.+.|++++|+.+++......
T Consensus 433 nNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 433 NNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999887643
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.5e-08 Score=94.96 Aligned_cols=208 Identities=16% Similarity=0.111 Sum_probs=145.0
Q ss_pred hhHhHHHHHHHHhh---cCCc--hhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHH
Q 045672 288 LLELGTQVHVHVLK---YDHD--LILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKL 359 (643)
Q Consensus 288 ~~~~a~~i~~~~~~---~~~~--~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 359 (643)
..+.+..-+..++. ..++ ...+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555555554 2222 35577778889999999999999988743 3567899999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--CC
Q 045672 360 FESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM--PY 436 (643)
Q Consensus 360 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~ 436 (643)
|++..+ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+.+. ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999987 4565 567777888888999999999999998763 454332222223345677899999999654 22
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 437 EPDAVTWRALLGACKVHRNTDLAICAAKKIL-------NLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 437 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
.|+...| .+ .....|+...+ ..++.+. ++.|+.+.+|..++.+|.+.|++++|...|++..+.+
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333222 12 22334554433 2334443 3456667789999999999999999999999988755
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.1e-07 Score=88.55 Aligned_cols=217 Identities=12% Similarity=0.015 Sum_probs=145.3
Q ss_pred CCChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHH
Q 045672 251 NSDVDEALNLYKRMKRAG-FAAD--QSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAM 326 (643)
Q Consensus 251 ~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~ 326 (643)
.+..+.++.-+.++.... ..|+ ...+......+...|+.+.|...+..+.+ .+.+...++.+...|...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345566666666666432 1222 23455556667777888888888877777 5555678888999999999999999
Q ss_pred HHHhhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 045672 327 SVFSRMIQ--K-DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403 (643)
Q Consensus 327 ~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 403 (643)
..|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|.+.|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99988843 3 4567888888889999999999999998874 55543222222233456789999999977654 2
Q ss_pred CCCChHHHHHHHHHHHhcCCHHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 404 IDPGREHYSCMIDLLGRAGKLQE--AVKLIHEM-PY----EP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 404 ~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
..|+... ..++..+ .|++.+ +.+.+.+. .. .| ....|..+...+...|++++|+..|+++++.+|.+.
T Consensus 195 ~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 LDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 3343322 2333333 444433 33333221 11 12 234788888899999999999999999999997543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-07 Score=84.35 Aligned_cols=163 Identities=17% Similarity=0.142 Sum_probs=136.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
....+.-+|.+.|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|+...+. -+-+..+.|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH
Confidence 3455677899999999999999998885 455 668888888899999999999999988762 23356778888888
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHH
Q 045672 418 LGRAGKLQEAVKLIHEMPYEPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 493 (643)
+|..|++++|...|++.-..|+ ..+|..+.-+..+.|+.+.|+..+++.++.+|+.+.+...+.....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998832332 447877777778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 045672 494 AEVRKTMRARGI 505 (643)
Q Consensus 494 ~~~~~~m~~~g~ 505 (643)
..+++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999887664
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-05 Score=82.39 Aligned_cols=425 Identities=15% Similarity=0.115 Sum_probs=233.1
Q ss_pred HHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC----
Q 045672 47 TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF---- 122 (643)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~---- 122 (643)
..+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.++ .+..-|..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcccc
Confidence 4557789999999999775432 333455567777888899999999999999999874 3444555555555222
Q ss_pred -CChhHHHHHHccCCC--CCcchHHHHHHHHHhCCChh-HHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHH
Q 045672 123 -SLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKMND-KALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGI 198 (643)
Q Consensus 123 -g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~ 198 (643)
.+.+....+++++.+ |...+.-.+.-.+.....+. .+...+..+...|+++ +|+.+-..+.......
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~------ 160 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA------ 160 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH------
Confidence 245555666666654 22222222222222222222 3344555566666432 2333333332221111
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCHHHHHHHH-hh-CCCCCcchH--HHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-H
Q 045672 199 IKVGFESDVFVRSALIDIYAKLGELRNAECVF-NE-MPTRDLVVW--NSIIGGFAQNSDVDEALNLYKRMKRAGFAAD-Q 273 (643)
Q Consensus 199 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f-~~-~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 273 (643)
+...++..|...-........- .. -..|....| .-+...|-..|++++|++++++.++. .|+ .
T Consensus 161 ----------~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ 228 (517)
T PF12569_consen 161 ----------IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLV 228 (517)
T ss_pred ----------HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcH
Confidence 1111222222110000000000 00 011233234 45567777888888888888888775 454 4
Q ss_pred HHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh----------hhH--
Q 045672 274 STLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDV----------ISW-- 340 (643)
Q Consensus 274 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~----------~~~-- 340 (643)
..|..-...+-+.|++..|....+.+.+ ...|..+-+-.+..+.++|++++|.+++......+. ..|
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 5677777778888888888888888888 566777777788888899999999888877755431 134
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CC-------------CCCHHHHHHHHHHHhccCC-------HHHHHHHHHHh
Q 045672 341 STMISGLAQNGYSQEALKLFESMKVS--RI-------------KPNYITIVGVLFACSHAGF-------VEDGWNHFKSM 398 (643)
Q Consensus 341 ~~li~~~~~~g~~~~A~~l~~~m~~~--g~-------------~p~~~t~~~ll~a~~~~g~-------~~~a~~~~~~~ 398 (643)
.....+|.+.|++..|+.-|....+. .+ +....+|..++...-+... ...|.+++-.+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l 388 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLEL 388 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 33456788888888888777655331 01 1223344444443322111 12344444444
Q ss_pred HHhcCCCCC-----------hHHHHHHHHHH---HhcCCHHHHHHHHH-----------hC----C--CCCCHHHHHHHH
Q 045672 399 KKFYGIDPG-----------REHYSCMIDLL---GRAGKLQEAVKLIH-----------EM----P--YEPDAVTWRALL 447 (643)
Q Consensus 399 ~~~~~~~p~-----------~~~~~~li~~~---~~~g~~~~A~~~~~-----------~m----~--~~p~~~~~~~ll 447 (643)
......... ..--..+..-- .+...-+++...-. .. + ..||+.-- .|+
T Consensus 389 ~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~Ge-kL~ 467 (517)
T PF12569_consen 389 HDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGE-KLL 467 (517)
T ss_pred hcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHH-HHh
Confidence 321000000 00000000000 01111111111100 00 1 11222211 111
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHH
Q 045672 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
....-.++|.++++-+.+..|++..+|..--.+|.+.|++--|.+-+.
T Consensus 468 ---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~ 515 (517)
T PF12569_consen 468 ---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALK 515 (517)
T ss_pred ---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHH
Confidence 233457889999999999999999999999999999999988887664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-05 Score=77.09 Aligned_cols=259 Identities=10% Similarity=0.000 Sum_probs=158.0
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHH
Q 045672 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST-LTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLD 314 (643)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~ 314 (643)
|+.....+...+...|+.++|...|++.+. +.|+..+ .....-.+...|+.+....+...+.. ......-|-.-..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ 308 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence 566677777777788888888887777654 2343322 11111223455666665555555544 2222222222223
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHH
Q 045672 315 MYCKCGSLEDAMSVFSRMIQKDVI---SWSTMISGLAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVED 390 (643)
Q Consensus 315 ~y~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~ 390 (643)
.....++++.|..+-++.++-|.. .|-.-...+.+.|+.++|.-.|+..+. +.| +...|..|+.+|...|.+.+
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHH
Confidence 334456677777766666544333 333333456677788888888877765 343 46677788888887888777
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHH-HHHHhc-CCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 045672 391 GWNHFKSMKKFYGIDPGREHYSCMI-DLLGRA-GKLQEAVKLIHEM-PYEPDAV-TWRALLGACKVHRNTDLAICAAKKI 466 (643)
Q Consensus 391 a~~~~~~~~~~~~~~p~~~~~~~li-~~~~~~-g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~ 466 (643)
|.-.-+...+. ++.+..+.+.+. +.+.-. .--++|.+++++. .++|+.. ..+.+...|...|.++.++.++++.
T Consensus 387 A~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 387 ANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 76666555542 333444443331 222211 2235677777665 5667654 4555666678888888888888888
Q ss_pred HhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 467 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+...|++ ...+.|++.+...+.+.+|.+.|.....
T Consensus 465 L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 465 LIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred Hhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8887755 5788888888888888888888877664
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.1e-05 Score=78.38 Aligned_cols=447 Identities=13% Similarity=0.027 Sum_probs=207.8
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK 121 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 121 (643)
|-.++..| ..+++...+++.+..++ +.+-...|.....-.+...|+.++|.......++..+ .+.+.|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhh
Confidence 34444444 23456666666666554 2222333443333334445566666655555554332 233445555444555
Q ss_pred CCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhchhhHH---HH
Q 045672 122 FSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNM-FTYSAVLRACDSLIILR---QL 194 (643)
Q Consensus 122 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~---~~ 194 (643)
..++++|.+.|..... .|...|.-+.-.-++.|+++...+.-.++.+. .|.. ..|.....+.--.|+.. .+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666654432 23333333333333444444444433333322 2221 12222222222222222 22
Q ss_pred HHHHHHhC-CCCchhHHHH------HHHHHHHcCCHHHHHHHHhhCCCC--C-cchHHHHHHHHHhCCChhHHHHHHHHH
Q 045672 195 HCGIIKVG-FESDVFVRSA------LIDIYAKLGELRNAECVFNEMPTR--D-LVVWNSIIGGFAQNSDVDEALNLYKRM 264 (643)
Q Consensus 195 ~~~~~~~g-~~~~~~~~~~------li~~y~~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m 264 (643)
.+...+.. -.|+...+.- -.....+.|..++|.+.+...... | ...-.+....+.+.++.++|..++..+
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 22222221 1222222211 112345567777777766655432 2 222334556677778888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHh--cCChhHhHHHHHHHHhhcCCch----hHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh-
Q 045672 265 KRAGFAADQSTLTSVLRACT--GLALLELGTQVHVHVLKYDHDL----ILNNALLDMYCKCGSLEDAMSVFSRMIQKDV- 337 (643)
Q Consensus 265 ~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~i~~~~~~~~~~~----~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~- 337 (643)
+.. .||..-|...+..+. -.+..+....++....+..|.. .+--+++. ...-.+...+++..+.++.+
T Consensus 246 l~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~---~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 246 LER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLN---GEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred Hhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhC---cchhHHHHHHHHHHHhhcCCC
Confidence 775 566666655554444 2233333334555444411110 00001110 01111112222232222222
Q ss_pred hhHHHHHHHHHhcCCHHH----HHHHHHHHHHCC----------CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 045672 338 ISWSTMISGLAQNGYSQE----ALKLFESMKVSR----------IKPNYI--TIVGVLFACSHAGFVEDGWNHFKSMKKF 401 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 401 (643)
..+..+.+.|-.-...+- +..+...+...| -+|... |+..+...+-+.|+++.|..+++....
T Consensus 321 ~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId- 399 (700)
T KOG1156|consen 321 SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID- 399 (700)
T ss_pred chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-
Confidence 122333332222111110 111111111111 134433 333455667778888888888887764
Q ss_pred cCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc---
Q 045672 402 YGIDPG-REHYSCMIDLLGRAGKLQEAVKLIHEMP--YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG--- 475 (643)
Q Consensus 402 ~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--- 475 (643)
..|+ ++.|..=..++...|.+++|..++++.. ..||...-.--..-..+..+.++|.++..+...-+-+-..
T Consensus 400 --HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~ 477 (700)
T KOG1156|consen 400 --HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLA 477 (700)
T ss_pred --cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHH
Confidence 3555 3456666677788888888888887772 2355544434444456677888888877776654421000
Q ss_pred ----hH--HHHHHHHHccCChhHHHHHHHHHH
Q 045672 476 ----TY--ILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 476 ----~~--~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
.| .-=+.+|.++|++-+|++-|..+.
T Consensus 478 ~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 478 EMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 11 223666777777777776555443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-07 Score=87.96 Aligned_cols=225 Identities=15% Similarity=0.073 Sum_probs=186.1
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHH
Q 045672 206 DVFVRSALIDIYAKLGELRNAECVFNEMPT--RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL-TSVLRA 282 (643)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a 282 (643)
|..--+-+...|.+.|-+.+|++.|+.-.+ +-+.+|-.|-..|.+-.+++.|+.+|.+-.+. .|-.+|+ ......
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 444446788999999999999999988654 56788999999999999999999999988774 5656665 456677
Q ss_pred HhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHH
Q 045672 283 CTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALK 358 (643)
Q Consensus 283 ~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 358 (643)
+...+..+.+.++++.+.+ .+.++.....+...|.-.++++-|.+.++++.+ .+...|+.+.-+|.-.+++|-++.
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHH
Confidence 7888999999999999999 666777777888889999999999999998754 577789999999999999999999
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 359 LFESMKVSRIKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 359 l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
-|++.+..--.|+ ...|..+-......|++..|.+.|+-... .-....+.++.|.-.-.|.|++++|..+++..
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999887655565 34566676677788999999999988775 33445678888888888999999999988876
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-06 Score=80.26 Aligned_cols=403 Identities=13% Similarity=0.066 Sum_probs=236.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhH
Q 045672 82 KCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDK 158 (643)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~ 158 (643)
.-+....++..|+.+++.-...+-+-...+--=+..+|.+.|++++|..++.-+.+ ++...|-.|.-.+.-.|.+.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 33445577888888877666544322222222345677899999999999987765 566677778777777899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 045672 159 ALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235 (643)
Q Consensus 159 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 235 (643)
|..+-.+.. -++..-..++...-+.++-+ .+|+.+... ..-.-+|..+..-.-.+.+|.+++.++..
T Consensus 110 A~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887766532 22233334444445555555 444444332 23344566666666678999999999876
Q ss_pred C--CcchHHH-HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--C--Ch----------------hHhH
Q 045672 236 R--DLVVWNS-IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG--L--AL----------------LELG 292 (643)
Q Consensus 236 ~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~--~~----------------~~~a 292 (643)
. +-...|. |.-+|.+..-++-+.+++.--.+. -||+ |+..=+.+|.. . |+ ++.+
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 4 3344444 445677778888888888766654 3332 22222333321 1 11 1111
Q ss_pred HHHHHH-----------------HhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC---
Q 045672 293 TQVHVH-----------------VLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGY--- 352 (643)
Q Consensus 293 ~~i~~~-----------------~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~--- 352 (643)
..+.+. +.+.- +..--.|+-.|.+.+++.+|..+.+++....+.-|-.-...++..|+
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHI--PEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhC--hHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcC
Confidence 111111 11100 11223355567888999999888887754444333222223344443
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 045672 353 ----SQEALKLFESMKVSRIKPNYIT-IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427 (643)
Q Consensus 353 ----~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 427 (643)
..-|.+.|+-.-.++..-|... --++.+++.-...+++.+.+++.+.. |=...|...+ .+..+++..|.+.+|
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEA 412 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHH
Confidence 3344444544434443333221 12334444455678888888888776 3344444444 467888888999999
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcC-CCC-cchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 428 VKLIHEMPY--EPDAVTWRALLGA-CKVHRNTDLAICAAKKILNLD-PQD-PGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 428 ~~~~~~m~~--~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+++|-+... -.|..+|.+++.- |...+.++.|-.++ +..+ |.+ ......+++-|.+++.+=-|.+.|+.+..
T Consensus 413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 999877731 1466677766654 57778888775554 4433 333 23455678888888888888888887765
Q ss_pred CC
Q 045672 503 RG 504 (643)
Q Consensus 503 ~g 504 (643)
..
T Consensus 490 lD 491 (557)
T KOG3785|consen 490 LD 491 (557)
T ss_pred cC
Confidence 43
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.7e-05 Score=79.69 Aligned_cols=389 Identities=14% Similarity=0.140 Sum_probs=197.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHH
Q 045672 75 VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYC 151 (643)
Q Consensus 75 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 151 (643)
..|..++++| ..+++..+....+.+++. .+....+.....-.+...|+.++|....+.-.. ++.+.|..+.-.+-
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 4456666655 457788888888888773 333334444333344567889999888776555 45678999988888
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHh
Q 045672 152 DAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFN 231 (643)
Q Consensus 152 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 231 (643)
...++++|++.|...... .||....- .-|.-.-++.|+++.....-.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~--~~dN~qil-------------------------------rDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKI--EKDNLQIL-------------------------------RDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred hhhhHHHHHHHHHHHHhc--CCCcHHHH-------------------------------HHHHHHHHHHHhhhhHHHHHH
Confidence 899999999999998865 45432211 111111122222222222111
Q ss_pred hCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHH------HHhcCChhHhHHHHHHHHhh
Q 045672 232 EMP---TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG-FAADQSTLTSVLR------ACTGLALLELGTQVHVHVLK 301 (643)
Q Consensus 232 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------a~~~~~~~~~a~~i~~~~~~ 301 (643)
+.. ...-..|.....++.-.|+...|..++++..+.. -.|+...+..... .....|.++.+.+.......
T Consensus 134 ~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 134 QLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 111 1223455555555555666666666665555432 1233333322211 12334444444444433333
Q ss_pred -cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC--ChhhHHH-HHHHHHhcCCHHHHH-HH-----------------
Q 045672 302 -YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK--DVISWST-MISGLAQNGYSQEAL-KL----------------- 359 (643)
Q Consensus 302 -~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~-li~~~~~~g~~~~A~-~l----------------- 359 (643)
+-.....-..-.+.+.+.+++++|..++..+..+ |..-|+- +..++.+-.+.-+++ .+
T Consensus 214 ~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rl 293 (700)
T KOG1156|consen 214 QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRL 293 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhc
Confidence 2222223333445555666666666666655433 2222222 222222222222222 23
Q ss_pred -----------------HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc--CC---------------C
Q 045672 360 -----------------FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY--GI---------------D 405 (643)
Q Consensus 360 -----------------~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~---------------~ 405 (643)
+..+.+.|+++-- ..+.+-+-.....+ +.+++...+ .+ +
T Consensus 294 plsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 294 PLSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred cHHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCC
Confidence 3333444433322 22222221111111 222221110 00 2
Q ss_pred CChH--HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 045672 406 PGRE--HYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAV-TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481 (643)
Q Consensus 406 p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 481 (643)
|... ++-.++..+-+.|+++.|...++.. ...|+.+ .|..-..-+...|+.++|...++++.+++-.|...-.--+
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcA 446 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCA 446 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHH
Confidence 3332 3345566677777777777777766 4445544 3333334466667777777777777777755543433556
Q ss_pred HHHHccCChhHHHHHHHHHHhCCC
Q 045672 482 NIYANSQKWDEVAEVRKTMRARGI 505 (643)
Q Consensus 482 ~~~~~~g~~~~a~~~~~~m~~~g~ 505 (643)
+-..++.+.++|.++.....+.|.
T Consensus 447 KYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHccccHHHHHHHHHhhhccc
Confidence 666677777777777777665553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6e-05 Score=78.81 Aligned_cols=419 Identities=14% Similarity=0.096 Sum_probs=254.2
Q ss_pred HHhCCCcchHHHHH----HHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCC
Q 045672 49 FCYQRDLPRAMKAM----HAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124 (643)
Q Consensus 49 ~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 124 (643)
+.-..+.+++.-.. .++....+.-|...|..+.-+....|+++.+.+.|++....-+ .....|+.+-..|.-+|.
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGS 372 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhcc
Confidence 33444555555433 3333344667889999999999999999999999999987543 456788899999999999
Q ss_pred hhHHHHHHccCCC----CCcch-HHHHHHHHH-hCCChhHHHHHHHHHHHC--C----CCCChhhHHHHHHH---H-hch
Q 045672 125 LEEAQVLFDQMPE----RNVVS-WTTMISAYC-DAKMNDKALELLIFMLRE--G----VRPNMFTYSAVLRA---C-DSL 188 (643)
Q Consensus 125 ~~~A~~~f~~m~~----~~~~~-~~~li~~~~-~~g~~~~A~~~~~~m~~~--g----~~p~~~t~~~ll~a---~-~~~ 188 (643)
-..|..+.++-.. |+..+ +-..-..|. +.+..++++++-.+.... + +.|-...+..+--. . +..
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 9999999987654 32233 332233333 347778888877777652 1 22222211111111 0 111
Q ss_pred hhHH--------HHHHHHHHh-CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC----CCCcchHHHHHHHHHhCCChh
Q 045672 189 IILR--------QLHCGIIKV-GFESDVFVRSALIDIYAKLGELRNAECVFNEMP----TRDLVVWNSIIGGFAQNSDVD 255 (643)
Q Consensus 189 ~~~~--------~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~ 255 (643)
...+ +..+..++. +-.|++.-| +.--|+..++++.|.....+.. ..+...|..+.-.+...+++.
T Consensus 453 ~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 1111 233333333 334444433 4445777889999888776654 357889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh------------------------------cCCc
Q 045672 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK------------------------------YDHD 305 (643)
Q Consensus 256 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~------------------------------~~~~ 305 (643)
+|+.+.+.....- .-|..-...-+..-...++.+++......+.. ....
T Consensus 531 ~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a 609 (799)
T KOG4162|consen 531 EALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDA 609 (799)
T ss_pred HHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccccc
Confidence 9999988765531 11111111111111112222222222111111 0001
Q ss_pred hhHHhHHHHHHH---hcCCHHHHHHHHhhcCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 045672 306 LILNNALLDMYC---KCGSLEDAMSVFSRMIQKD------VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIV 376 (643)
Q Consensus 306 ~~~~~~Li~~y~---~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 376 (643)
..++..+..-.. +.-..+.....+.....++ ...|......+.+.+..++|...+.+....- ......|.
T Consensus 610 ~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~ 688 (799)
T KOG4162|consen 610 ISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYY 688 (799)
T ss_pred chhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHH
Confidence 112222211111 1111111111222222233 2246667778889999999987777765531 22344454
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHH
Q 045672 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVK--LIHEM-PYEP-DAVTWRALLGACK 451 (643)
Q Consensus 377 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~ 451 (643)
.....+...|..++|.+.|..... +.| ++....++..++.+.|+..-|.. ++..+ ...| +...|-.+...+.
T Consensus 689 ~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 689 LRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK 765 (799)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 444566778899999999887764 556 46688999999999998777766 77666 5556 5668999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcc
Q 045672 452 VHRNTDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~p~~~~ 475 (643)
+.|+.+.|-..|.-+.++++.+|.
T Consensus 766 ~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 766 KLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999877663
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-05 Score=74.19 Aligned_cols=210 Identities=19% Similarity=0.199 Sum_probs=133.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHH---HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhch
Q 045672 112 VNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMI---SAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL 188 (643)
Q Consensus 112 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 188 (643)
.--|.+.+.-.|++.+|+.-|....+.|+..|-++. ..|...|+...|+.=+.+.++. +||-..-
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A---------- 108 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA---------- 108 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH----------
Confidence 334555566678888888888888887777777765 4678888888888888887754 6662111
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 045672 189 IILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268 (643)
Q Consensus 189 ~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 268 (643)
-+++| ..+.+.|.++.|..-|+.+.+.++. +|...+|.+-+....+
T Consensus 109 ---------RiQRg------------~vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e-- 154 (504)
T KOG0624|consen 109 ---------RIQRG------------VVLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQE-- 154 (504)
T ss_pred ---------HHHhc------------hhhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHH--
Confidence 11222 3467889999999988887654331 1111222211111111
Q ss_pred CCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhc---CCCChhhHHHHH
Q 045672 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRM---IQKDVISWSTMI 344 (643)
Q Consensus 269 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m---~~~~~~~~~~li 344 (643)
.......+..+...|+...+......+++ .+.+...+..-..+|...|++..|..-++.. ...++....-+-
T Consensus 155 ----~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis 230 (504)
T KOG0624|consen 155 ----HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKIS 230 (504)
T ss_pred ----HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHH
Confidence 11122233334456677777777777777 6667777777788888888888887655544 344566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 045672 345 SGLAQNGYSQEALKLFESMKVSRIKPNYI 373 (643)
Q Consensus 345 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 373 (643)
..+-..|+.+.++...++-++ +.||..
T Consensus 231 ~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 231 QLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 777788888888888887766 567754
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.8e-06 Score=75.09 Aligned_cols=199 Identities=14% Similarity=0.029 Sum_probs=91.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhc
Q 045672 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKC 319 (643)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~ 319 (643)
...+..+|.+.|++..|..-+++.++.. +-+..++..+...|...|..+.|.+.++.+.+ .+.+..+.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F---- 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF---- 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH----
Confidence 4445556666666666666666666542 11233444444444444444444444444444 22233334444444
Q ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 045672 320 GSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSM 398 (643)
Q Consensus 320 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~ 398 (643)
+|.+|++++|...|++....-.-|. ..||..+.-+..+.|+.+.|..+|+..
T Consensus 113 ---------------------------LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 113 ---------------------------LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred ---------------------------HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 4444444444444444443211111 234444444444455555555555444
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM--PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 399 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
.+. .+........+.....+.|++..|..+++.. ...++..+....|..-...||.+.+-+.-.++....|..
T Consensus 166 L~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 166 LEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 431 1122333444444455555555555554444 112344444444444455555555555555555555543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-05 Score=84.51 Aligned_cols=285 Identities=14% Similarity=0.035 Sum_probs=190.8
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC--CCcc-hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----c
Q 045672 213 LIDIYAKLGELRNAECVFNEMPT--RDLV-VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT----G 285 (643)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~ 285 (643)
....+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|+.+.+. .|+...|-..+..|. .
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcc
Confidence 34556788999999999987654 2443 4556778889999999999999999997 466666655555544 1
Q ss_pred --CChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCH-HHHHHHHhhcCCCChh-hHHHHHHHHHhcCCHHHHHHHHH
Q 045672 286 --LALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSL-EDAMSVFSRMIQKDVI-SWSTMISGLAQNGYSQEALKLFE 361 (643)
Q Consensus 286 --~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~-~~A~~~~~~m~~~~~~-~~~~li~~~~~~g~~~~A~~l~~ 361 (643)
..+.+.-..+++.....-|.......+.-.+..-..+ ..+...+..+..+.+. +++.+-..|....+..-..+++.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 2246666777777766223322222222222221122 2233444455555654 45555556665555555555555
Q ss_pred HHHHC----C----------CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCH
Q 045672 362 SMKVS----R----------IKPNYI--TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGKL 424 (643)
Q Consensus 362 ~m~~~----g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 424 (643)
..... + -.|... ++..+...|...|++++|+++.+..++. .|+ +..|..-...|-+.|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCH
Confidence 55432 1 123332 4455566778899999999999999873 565 77899999999999999
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC-------cchHHHHHHHHHccCChhHH
Q 045672 425 QEAVKLIHEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLD--PQD-------PGTYILLSNIYANSQKWDEV 493 (643)
Q Consensus 425 ~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a 493 (643)
++|.+.++.. ... .|...-+-....+.+.|++++|...+......+ |.. .......+.+|.+.|++..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999888 233 355566666677889999999999999887654 221 12234678999999999999
Q ss_pred HHHHHHHHh
Q 045672 494 AEVRKTMRA 502 (643)
Q Consensus 494 ~~~~~~m~~ 502 (643)
++.+..+.+
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 988877654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3e-05 Score=80.03 Aligned_cols=406 Identities=12% Similarity=0.091 Sum_probs=191.2
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 045672 44 DDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123 (643)
Q Consensus 44 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 123 (643)
..|..|....+|++|+.+-+. .|.+.-...-.+.++++...|.-+.|-++- . .+-.. -+-|+.|.+.|
T Consensus 562 ~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk----~----sdgd~-laaiqlyika~ 629 (1636)
T KOG3616|consen 562 EAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK----E----SDGDG-LAAIQLYIKAG 629 (1636)
T ss_pred HHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc----c----ccCcc-HHHHHHHHHcC
Confidence 456777788889999987543 343333334445566666667666554432 1 11111 34577888888
Q ss_pred ChhHHHHHHccCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH-HHHHHHHH
Q 045672 124 LLEEAQVLFDQMP--ERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR-QLHCGIIK 200 (643)
Q Consensus 124 ~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~-~~~~~~~~ 200 (643)
....|.+.-..-. ..|......+..++.+..-+++|-++|+++.. |+. .+. |-+.|+.- +.. ++.+
T Consensus 630 ~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d----~dk-----ale-~fkkgdaf~kai-elar 698 (1636)
T KOG3616|consen 630 KPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FDK-----ALE-CFKKGDAFGKAI-ELAR 698 (1636)
T ss_pred CchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HHH-----HHH-HHHcccHHHHHH-HHHH
Confidence 8777766543221 13444444444444444444555555544431 110 010 11111110 000 0000
Q ss_pred hCCCCchhHH-HH--------------------------HHHHHHHcCCHHHHHHHHhhCCCCCcc--hHHHHHHHHHhC
Q 045672 201 VGFESDVFVR-SA--------------------------LIDIYAKLGELRNAECVFNEMPTRDLV--VWNSIIGGFAQN 251 (643)
Q Consensus 201 ~g~~~~~~~~-~~--------------------------li~~y~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~ 251 (643)
..++..++.. .. -+.+-.....|.+|..+++.+.++++. -|..+...|+..
T Consensus 699 fafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~ 778 (1636)
T KOG3616|consen 699 FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANK 778 (1636)
T ss_pred hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccc
Confidence 0111110000 01 122223334444444444444443322 233444444555
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhh
Q 045672 252 SDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSR 331 (643)
Q Consensus 252 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~ 331 (643)
|+++.|.++|-+.- .+.-.|..|.+.|.++.|.++-.....-+.....|-+-..-.-+.|++.+|+++|-.
T Consensus 779 ~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 779 GDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred hhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 55555554443211 122334444444444444333322222222223333333333444445555544444
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH
Q 045672 332 MIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409 (643)
Q Consensus 332 m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 409 (643)
+..|+. .|..|-++|..++.+++..+- .|+ ..|-..+..-+...|++..|...|-+...
T Consensus 850 i~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------- 910 (1636)
T KOG3616|consen 850 IGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------- 910 (1636)
T ss_pred ccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------
Confidence 444432 234445555555555444432 233 23445555666677787777776655432
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHH------HH-------------HHHcCCHHHHHHHHHHH
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYE----PDAVTWRALL------GA-------------CKVHRNTDLAICAAKKI 466 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~ll------~~-------------~~~~g~~~~a~~~~~~~ 466 (643)
|.+-+++|-..+.+++|.++-+.-+-. .-...|.--+ .. .+..+.++.|..+.+-.
T Consensus 911 -~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~ 989 (1636)
T KOG3616|consen 911 -FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIA 989 (1636)
T ss_pred -HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHh
Confidence 566778888888888888876543211 1112232211 11 23344445555444443
Q ss_pred HhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 467 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
.+ ..-+.....++..+...|++++|.+-+-+..+.
T Consensus 990 ~k--~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 990 AK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 32 223456778888889999999998777665544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.5e-06 Score=83.54 Aligned_cols=102 Identities=18% Similarity=0.057 Sum_probs=61.4
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcC
Q 045672 43 LDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKF 122 (643)
Q Consensus 43 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 122 (643)
.+++..+. .++.+|..+|-+-- .-...+..|....+++++..+-+. .|.+.-...-.+.+..+...
T Consensus 537 ra~lail~--kkfk~ae~ifleqn---------~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt 602 (1636)
T KOG3616|consen 537 RAMLAILE--KKFKEAEMIFLEQN---------ATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDT 602 (1636)
T ss_pred HHHHHHHH--hhhhHHHHHHHhcc---------cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhc
Confidence 34444433 35677776664311 123345566667778888776543 34433334556667777778
Q ss_pred CChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHH
Q 045672 123 SLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL 163 (643)
Q Consensus 123 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 163 (643)
|+-+.|-++= +.+-.+ -+-|..|.+.|.+.+|....
T Consensus 603 ~qd~ka~elk----~sdgd~-laaiqlyika~~p~~a~~~a 638 (1636)
T KOG3616|consen 603 GQDEKAAELK----ESDGDG-LAAIQLYIKAGKPAKAARAA 638 (1636)
T ss_pred Cchhhhhhhc----cccCcc-HHHHHHHHHcCCchHHHHhh
Confidence 8888776543 333333 34588999999999887654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-07 Score=91.47 Aligned_cols=245 Identities=13% Similarity=0.080 Sum_probs=117.6
Q ss_pred HHHHcCCHHHHHHHHhhCCCC----CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHh
Q 045672 216 IYAKLGELRNAECVFNEMPTR----DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291 (643)
Q Consensus 216 ~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 291 (643)
-+.-.|++..+..-.+ .... +.....-+..++...|+++.++. ++... -.|....+..+...+....+-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHH
Confidence 3445677777775444 2111 22334456677777777665443 22222 25555555444444433233322
Q ss_pred HHHHHHHHh-h-cC-CchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045672 292 GTQVHVHVL-K-YD-HDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368 (643)
Q Consensus 292 a~~i~~~~~-~-~~-~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 368 (643)
+..-+.... . .. .+..+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-- 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-- 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 222221111 1 11 12222223334455556666665555443 23333444455555555555555555555442
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 045672 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM--PYEPDAVTWRAL 446 (643)
Q Consensus 369 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 446 (643)
..| .+...+..++ +..+.-.+.+.+|..+|+++ ...++..+.+.+
T Consensus 161 ~eD-~~l~qLa~aw--------------------------------v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~ 207 (290)
T PF04733_consen 161 DED-SILTQLAEAW--------------------------------VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGL 207 (290)
T ss_dssp SCC-HHHHHHHHHH--------------------------------HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHH
T ss_pred CCc-HHHHHHHHHH--------------------------------HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 122 2222222222 22222223455555555555 223455566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCCh-hHHHHHHHHHHh
Q 045672 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW-DEVAEVRKTMRA 502 (643)
Q Consensus 447 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 502 (643)
..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++.+++.
T Consensus 208 A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 66667777777777777777777777777777777777777776 556666666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-06 Score=85.50 Aligned_cols=153 Identities=18% Similarity=0.149 Sum_probs=104.1
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHH
Q 045672 214 IDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGT 293 (643)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 293 (643)
..+|...|++++|.+++++. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+.
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa------------- 170 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLA------------- 170 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHH-------------
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHH-------------
Confidence 34566788899998888776 45666677888889999999999999998764 333 3332222
Q ss_pred HHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045672 294 QVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370 (643)
Q Consensus 294 ~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 370 (643)
.+.+..+.-.+.+.+|..+|+++.+ +++.+.|.+..+....|++++|.+++.+....+ +-
T Consensus 171 ----------------~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~ 233 (290)
T PF04733_consen 171 ----------------EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PN 233 (290)
T ss_dssp ----------------HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CC
T ss_pred ----------------HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cC
Confidence 3344444444567888888888744 355667777788888888888888888876543 23
Q ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhHHh
Q 045672 371 NYITIVGVLFACSHAGFV-EDGWNHFKSMKKF 401 (643)
Q Consensus 371 ~~~t~~~ll~a~~~~g~~-~~a~~~~~~~~~~ 401 (643)
|..|+..++......|+. +.+.+++..+...
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 456777777777777776 6677788877763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.6e-07 Score=91.92 Aligned_cols=217 Identities=15% Similarity=0.139 Sum_probs=169.8
Q ss_pred hcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHH
Q 045672 284 TGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKL 359 (643)
Q Consensus 284 ~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l 359 (643)
.+.|++..|.-.|+.+++ .+.+...|.-|.......++-..|...+.+..+- |....-+|...|...|.-.+|+..
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 456778888888888887 7777888888888888888888888888877543 556677777788888988899999
Q ss_pred HHHHHHCCCCCCHHHHHHH--------HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 045672 360 FESMKVSRIKPNYITIVGV--------LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431 (643)
Q Consensus 360 ~~~m~~~g~~p~~~t~~~l--------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 431 (643)
++.-+... |-..-...- -........+....++|-.+....+..+|+.++.+|.-+|--.|.+++|.+.|
T Consensus 376 L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 88875532 111000000 01122223345566677777766666688899999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 432 HEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 432 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+.+ ..+| |...||-|...+....+.++|+..|++++++.|.-..+...|+-.|...|.++||.+.|-....
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 987 6677 5668999999999999999999999999999999999999999999999999999999877664
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-05 Score=74.76 Aligned_cols=407 Identities=11% Similarity=0.034 Sum_probs=230.6
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHH-HHHHHH
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI-LLNMHV 120 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~ 120 (643)
+++.+..+.+..++.+|++++..-.+.. +.+....+.|..+|-...++..|...++++-..- |...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 5667777788888999999888776653 3367777888888888888888888888886643 43333221 122334
Q ss_pred cCCChhHHHHHHccCCCC-CcchHHHHHHH--HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHH
Q 045672 121 KFSLLEEAQVLFDQMPER-NVVSWTTMISA--YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCG 197 (643)
Q Consensus 121 ~~g~~~~A~~~f~~m~~~-~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~ 197 (643)
+.+.+.+|+++...|... +...-..-+.+ ..+.+++..+..+.++....|
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en--------------------------- 142 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN--------------------------- 142 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---------------------------
Confidence 567778888888777652 22221111211 223455666666666554221
Q ss_pred HHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 045672 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT----RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273 (643)
Q Consensus 198 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 273 (643)
+..+.+...-...+.|+++.|.+-|+...+ .....||.-+..| +.|+++.|+++..++.+.|++..+
T Consensus 143 --------~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 143 --------EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred --------ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCC
Confidence 222222233445688999999999988765 3456777655544 678999999999999988865322
Q ss_pred HHH----HHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhhHHHHH
Q 045672 274 STL----TSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK-----DVISWSTMI 344 (643)
Q Consensus 274 ~t~----~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li 344 (643)
..= .-.+++ ..+..-..++... -+..+|.-...+.+.|+.+.|.+.+-.|+.+ |++|...+.
T Consensus 214 ElgIGm~tegiDv----rsvgNt~~lh~Sa-----l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~A 284 (459)
T KOG4340|consen 214 ELGIGMTTEGIDV----RSVGNTLVLHQSA-----LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQA 284 (459)
T ss_pred ccCccceeccCch----hcccchHHHHHHH-----HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHH
Confidence 110 000000 0000000111100 0122344445577899999999999999754 677765543
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CChHHHHHHHHHHH-hcC
Q 045672 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID-PGREHYSCMIDLLG-RAG 422 (643)
Q Consensus 345 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~-~~g 422 (643)
-.- ..+++.+..+-++-+..... --..||..++-.||++.-++.|-.++.+-... ... .+...|+ |++++. -.-
T Consensus 285 l~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT 360 (459)
T KOG4340|consen 285 LMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQT 360 (459)
T ss_pred Hhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCC
Confidence 222 23455555555555555432 33679999999999999999988877542210 000 1223333 333333 344
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH----HHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHH
Q 045672 423 KLQEAVKLIHEMPYEPDAVTWRALLGA-CKVHRNT----DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497 (643)
Q Consensus 423 ~~~~A~~~~~~m~~~p~~~~~~~ll~~-~~~~g~~----~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 497 (643)
..++|.+-++.+...-....-..-+.. -.++.+- ..+++-+++.+++-- .....-++.|.+..++..+.++|
T Consensus 361 ~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~F 437 (459)
T KOG4340|consen 361 APEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIF 437 (459)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHH
Confidence 566666655444100000000011111 1112221 223334444444321 14566678889999999999999
Q ss_pred HHHHhC
Q 045672 498 KTMRAR 503 (643)
Q Consensus 498 ~~m~~~ 503 (643)
..-.+-
T Consensus 438 r~Svef 443 (459)
T KOG4340|consen 438 RKSVEF 443 (459)
T ss_pred HHHHhh
Confidence 876653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-05 Score=80.13 Aligned_cols=421 Identities=14% Similarity=0.103 Sum_probs=222.2
Q ss_pred HHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHcCCChh
Q 045672 48 RFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE-TFLVNILLNMHVKFSLLE 126 (643)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 126 (643)
+....|+++.|+.+|-+..... ++|...|+.-..+++..|++++|.+=-..-++.. |+ ..-|+.+..++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccHH
Confidence 4456789999999998887765 5588888888888999999988887766666643 43 456788888888889999
Q ss_pred HHHHHHccCCCC---CcchHHHHHHHHHhCCChhHH-HHHHHHH-HHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHh
Q 045672 127 EAQVLFDQMPER---NVVSWTTMISAYCDAKMNDKA-LELLIFM-LREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKV 201 (643)
Q Consensus 127 ~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A-~~~~~~m-~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~ 201 (643)
+|...|.+-.+. |...++-+..++ ..+.+ .+.|..- .-.++.-++.|-..+-+ ..+..+...+.+
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~-----~~~~~~l~~~~~- 157 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNYSLSD-----PAYVKILEIIQK- 157 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhhhhcc-----HHHHHHHHHhhc-
Confidence 999999877663 334455555555 11111 1111100 00001111111111000 000011111100
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChh----HHHHHHHHHHHc-CCCCCHHHH
Q 045672 202 GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVD----EALNLYKRMKRA-GFAADQSTL 276 (643)
Q Consensus 202 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~m~~~-g~~p~~~t~ 276 (643)
.|. =+..|..-.++..|..++......-...-..++ ......+. .......++.+. ..+--..-.
T Consensus 158 --~p~------~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 158 --NPT------SLKLYLNDPRLMKADGQLKGVDELLFYASGIEI--LASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred --CcH------hhhcccccHHHHHHHHHHhcCcccccccccccc--CCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 000 011111111122222222111100000000000 00000000 000000000000 000011123
Q ss_pred HHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChh----------hHHHHHHH
Q 045672 277 TSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI----------SWSTMISG 346 (643)
Q Consensus 277 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~----------~~~~li~~ 346 (643)
..+.++.-...+++.+.+-+..+..+..++..++....+|...|...++...-+...+..-. +...+..+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 34455555566667777777776664455666677777777777777666555444332111 12223445
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCCHH
Q 045672 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE-HYSCMIDLLGRAGKLQ 425 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~ 425 (643)
|.+.++++.|+..|.+....-..|+..+ +....+++........ -+.|... -.-.=...+.+.|++.
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHH
Confidence 6667788888888888665544444322 1222333333333222 1233321 1111145566788888
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 426 EAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 426 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
.|.+.+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|..=+-++....+|++|.+.|++-.+.
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888877 3334 55677777777888888888888888888888888888888888888888888888888776654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.5e-05 Score=78.85 Aligned_cols=295 Identities=12% Similarity=-0.035 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcc---hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH---H
Q 045672 209 VRSALIDIYAKLGELRNAECVFNEMPT---RDLV---VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS---V 279 (643)
Q Consensus 209 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---l 279 (643)
.+..+...|...|+.+.+.+.+..... ++.. ........+...|++++|.+++++..+.. +.|...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 344455566667777776655554332 2222 22233445677899999999999988753 223333331 1
Q ss_pred HHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHH
Q 045672 280 LRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQE 355 (643)
Q Consensus 280 l~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 355 (643)
.......+....+.+....... .+........+...+...|++++|...+++..+ .+...+..+...|...|++++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 1111223444555554444222 333344555677788999999999999998743 345677888889999999999
Q ss_pred HHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHHhcCCHHHHHH
Q 045672 356 ALKLFESMKVSRI-KPNY--ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY-S--CMIDLLGRAGKLQEAVK 429 (643)
Q Consensus 356 A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~ 429 (643)
|+..+++...... .|+. ..+..+...+...|+.++|..+++.........+..... + .++..+...|..+.+.+
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 246 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR 246 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH
Confidence 9999998876432 2332 234467778889999999999999875421111222111 1 23333444443222222
Q ss_pred H---HHhC-CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C--------CCcchHHHHHHHHHccCChhHH
Q 045672 430 L---IHEM-PYEPD---AVTWRALLGACKVHRNTDLAICAAKKILNLD-P--------QDPGTYILLSNIYANSQKWDEV 493 (643)
Q Consensus 430 ~---~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a 493 (643)
. .... +..|. .........++...|+.+.|...++.+.... . .........+.++...|++++|
T Consensus 247 w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A 326 (355)
T cd05804 247 WEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATA 326 (355)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHH
Confidence 2 1111 11011 1222245556778899999999998886532 1 1344556778888999999999
Q ss_pred HHHHHHHHhCC
Q 045672 494 AEVRKTMRARG 504 (643)
Q Consensus 494 ~~~~~~m~~~g 504 (643)
.+.+......+
T Consensus 327 ~~~L~~al~~a 337 (355)
T cd05804 327 LELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00013 Score=78.10 Aligned_cols=238 Identities=15% Similarity=0.161 Sum_probs=155.0
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCChhHhHHHHHHHHhh--------------
Q 045672 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD-QSTLTSVLRACTGLALLELGTQVHVHVLK-------------- 301 (643)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-------------- 301 (643)
|+..-+..+.++...+-+.+-+++++++.-..-.-+ ......++-.-+-..+.....++..++..
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQ 1062 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhh
Confidence 455556667788888888888888888764321111 11111111111111122222222222222
Q ss_pred -----------cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045672 302 -----------YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370 (643)
Q Consensus 302 -----------~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 370 (643)
+..+....+.|++ .-++++.|.+.-++..+ ...|..+..+-.+.|...+|++-|-+. -
T Consensus 1063 LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------d 1131 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------D 1131 (1666)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------C
Confidence 2222222222222 23344444444433333 457999999999999999999887653 3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045672 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450 (643)
Q Consensus 371 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 450 (643)
|+..|..++..+++.|.+++-.+++....++ .-+|.+. +.|+-+|++.+++.+-++++. -|+..-...+.+-|
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRC 1204 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHH
Confidence 6778999999999999999999999877764 5556544 578999999999999888764 37888788888889
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHH
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 500 (643)
...|.++.|.-+|.-+ +.|..|+..+...|.+..|..--++.
T Consensus 1205 f~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999998888753 56777888888888877776554433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-06 Score=93.86 Aligned_cols=201 Identities=12% Similarity=0.115 Sum_probs=170.9
Q ss_pred cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 045672 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK--------DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI 373 (643)
Q Consensus 302 ~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 373 (643)
.+.....|-..|......++.++|++++++.... -...|.++++.-...|.-+...++|+++.+. --...
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 6666778888899999999999999999887432 2347889998888889888999999999873 22245
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP---DAVTWRALLGA 449 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~ 449 (643)
.|..|+..|.+.+.+++|.++++.|.++++ .....|..+++.+.++.+-+.|.+++.++ ..-| ......-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 678899999999999999999999999766 66778999999999999999999999876 2223 34455666677
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 045672 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 506 (643)
-.++|+.+++..+|+..+...|.....|..++++-.+.|..+.++.+|++....++.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 789999999999999999999999999999999999999999999999999988775
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00027 Score=75.83 Aligned_cols=427 Identities=15% Similarity=0.146 Sum_probs=227.3
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHH----------HHHHHHHHHcCC-
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEA----------KLVHNHVLSGGF- 105 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a----------~~~~~~~~~~g~- 105 (643)
+..+.-+-+..-.-+.++..--+..++...+.|. .|..+++++.+.|..+++-.+- +.+=....++++
T Consensus 836 ~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~ 914 (1666)
T KOG0985|consen 836 RGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPH 914 (1666)
T ss_pred hccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCc
Confidence 3444455666666777788888888888888884 4889999999888765543221 111111111111
Q ss_pred ------------------CCchhHHHHHHHHHHcCCChhHHHHHHc-----------cC-----CC-CCcchHHHHHHHH
Q 045672 106 ------------------EPETFLVNILLNMHVKFSLLEEAQVLFD-----------QM-----PE-RNVVSWTTMISAY 150 (643)
Q Consensus 106 ------------------~~~~~~~~~li~~~~~~g~~~~A~~~f~-----------~m-----~~-~~~~~~~~li~~~ 150 (643)
......+..+.+.+.+..+.+-=.+++. +. ++ .|+..-+.-..++
T Consensus 915 lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAf 994 (1666)
T KOG0985|consen 915 LACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAF 994 (1666)
T ss_pred eEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHH
Confidence 0011122233333333333332222321 11 11 3555566677888
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhH-----HHHHHHHhchhhHHHHHHHHHHhC-C-CCchhHHHHHHHHHHHcCCH
Q 045672 151 CDAKMNDKALELLIFMLREGVRPNMFTY-----SAVLRACDSLIILRQLHCGIIKVG-F-ESDVFVRSALIDIYAKLGEL 223 (643)
Q Consensus 151 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~-----~~ll~a~~~~~~~~~~~~~~~~~g-~-~~~~~~~~~li~~y~~~g~~ 223 (643)
...+-+.+-++++++..-. |+.++= +.++-...+ .+..++.+.+.+.. + .|+ +.......+-+
T Consensus 995 MtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~------ia~iai~~~Ly 1064 (1666)
T KOG0985|consen 995 MTADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPD------IAEIAIENQLY 1064 (1666)
T ss_pred HhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchh------HHHHHhhhhHH
Confidence 8888888888988887643 222211 111111111 11112222222221 0 011 11222223334
Q ss_pred HHHHHHHhhCCC-------------------------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 045672 224 RNAECVFNEMPT-------------------------RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS 278 (643)
Q Consensus 224 ~~A~~~f~~~~~-------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 278 (643)
++|..+|+...- ..+..|+.+..+-.+.|...+|++-|-+. -|+..|..
T Consensus 1065 EEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~e 1138 (1666)
T KOG0985|consen 1065 EEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLE 1138 (1666)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHH
Confidence 444444433210 13567999999999999999999877432 36788999
Q ss_pred HHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhh-------------------
Q 045672 279 VLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVIS------------------- 339 (643)
Q Consensus 279 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~------------------- 339 (643)
++.++.+.|.++.-..++..+.+......+-+.|+-+|++.+++.+-++... .||+..
T Consensus 1139 Vi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl 1215 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKL 1215 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHH
Confidence 9999999999999999998888844455566789999999999988776653 233333
Q ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 045672 340 -------WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412 (643)
Q Consensus 340 -------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 412 (643)
|..+...+...|++..|.+.-++. .+..||-.+-.+|...+.+..| .|.- .++-....-..
T Consensus 1216 ~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCG-L~iivhadeLe 1283 (1666)
T KOG0985|consen 1216 LYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICG-LNIIVHADELE 1283 (1666)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcC-ceEEEehHhHH
Confidence 444444444555555544443322 2344555555555554444333 2211 12222334455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCCh
Q 045672 413 CMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490 (643)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 490 (643)
-|+..|-..|.++|-..+++.. +.+. ....|.-|.-.|.+.+ +++-.+.++-... ....--+++++.++..|
T Consensus 1284 eli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFws-----RvNipKviRA~eqahlW 1357 (1666)
T KOG0985|consen 1284 ELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWS-----RVNIPKVIRAAEQAHLW 1357 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHH-----hcchHHHHHHHHHHHHH
Confidence 5666666777777766666654 3322 2233444444444332 2222222211111 01122355666666667
Q ss_pred hHHHHHHHHHH
Q 045672 491 DEVAEVRKTMR 501 (643)
Q Consensus 491 ~~a~~~~~~m~ 501 (643)
.|..-++.+-.
T Consensus 1358 ~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1358 SELVFLYDKYE 1368 (1666)
T ss_pred HHHHHHHHhhh
Confidence 66666665543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00011 Score=85.21 Aligned_cols=294 Identities=11% Similarity=-0.004 Sum_probs=190.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC----CC---c-----chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----H
Q 045672 211 SALIDIYAKLGELRNAECVFNEMPT----RD---L-----VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ----S 274 (643)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~----~~---~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ 274 (643)
......+...|++++|...+..... .+ . .....+...+...|++++|...+++....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3444556678899988887765421 11 1 11122334456789999999999887663111222 2
Q ss_pred HHHHHHHHHhcCChhHhHHHHHHHHhh----c-CC--chhHHhHHHHHHHhcCCHHHHHHHHhhcCC-------C----C
Q 045672 275 TLTSVLRACTGLALLELGTQVHVHVLK----Y-DH--DLILNNALLDMYCKCGSLEDAMSVFSRMIQ-------K----D 336 (643)
Q Consensus 275 t~~~ll~a~~~~~~~~~a~~i~~~~~~----~-~~--~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-------~----~ 336 (643)
....+...+...|+++.|...+..+.. . .+ .......+...+...|++++|...+++... + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 334445556778999999999888876 1 11 123445667788899999999998876522 1 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH-
Q 045672 337 VISWSTMISGLAQNGYSQEALKLFESMKVS--RIKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY- 411 (643)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~- 411 (643)
...+..+...+...|++++|...+++.... ...+. ...+..+.......|+.++|.+.+...............+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 223445556677789999999999887542 11222 2334445556778899999999988875421111111111
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCcc
Q 045672 412 ----SCMIDLLGRAGKLQEAVKLIHEMPYE--PDA----VTWRALLGACKVHRNTDLAICAAKKILNLD------PQDPG 475 (643)
Q Consensus 412 ----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~ 475 (643)
......+...|+.+.|.+.+...... ... ..+..+..++...|+.++|...++++++.. +....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11224456689999999998776211 111 113455566888999999999999988742 12234
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 476 TYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 476 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
++..++.+|...|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 67788999999999999999999988654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.5e-05 Score=78.26 Aligned_cols=408 Identities=15% Similarity=0.151 Sum_probs=200.4
Q ss_pred CCCCCcchHHHHHH--HHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-------
Q 045672 34 TITRNSSSLLDDFT--RFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGG------- 104 (643)
Q Consensus 34 ~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------- 104 (643)
...-|.+|-.+|+. .|...|+.+.|.+-.+.++ +...|..+.+.|.+.++++-|+-.+..|....
T Consensus 721 le~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~ 794 (1416)
T KOG3617|consen 721 LENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRR 794 (1416)
T ss_pred ccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHH
Confidence 33445566666664 5677888888888777665 34568888888888887777776666554321
Q ss_pred -C-CCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 045672 105 -F-EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVL 182 (643)
Q Consensus 105 -~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 182 (643)
. .++ ..-....-.-...|-+++|+.+|++... |..|=..|-..|++++|+++-+.=-+-.++-+-+-|..-|
T Consensus 795 a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 795 AQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred HHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 1 121 2223333344567888888888887664 4445566777888888888766432222222222222222
Q ss_pred HHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 045672 183 RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYK 262 (643)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 262 (643)
.+ .++.+...+...+.|... -.+...| ..+...-+.+.+++.+ ...|.-...-+-..|+.+.|+.+|.
T Consensus 869 ea---r~Di~~AleyyEK~~~ha-fev~rmL------~e~p~~~e~Yv~~~~d--~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 869 EA---RRDIEAALEYYEKAGVHA-FEVFRML------KEYPKQIEQYVRRKRD--ESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred Hh---hccHHHHHHHHHhcCChH-HHHHHHH------HhChHHHHHHHHhccc--hHHHHHHHHHHhcccchHHHHHHHH
Confidence 21 222222222222222110 0000000 0111222222233332 2333334444445677777777776
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHH
Q 045672 263 RMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWST 342 (643)
Q Consensus 263 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~ 342 (643)
...+ |-++++..+-.|..++|.++-++. .|......|..+|-..|++.+|...|-+.. ++..
T Consensus 937 ~A~D---------~fs~VrI~C~qGk~~kAa~iA~es----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afsn 998 (1416)
T KOG3617|consen 937 SAKD---------YFSMVRIKCIQGKTDKAARIAEES----GDKAACYHLARMYENDGDVVKAVKFFTRAQ-----AFSN 998 (1416)
T ss_pred Hhhh---------hhhheeeEeeccCchHHHHHHHhc----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHH
Confidence 5543 334445555566666666554432 344455667777777777777777776542 1222
Q ss_pred HHHHHHhcC---------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH---------HHHh
Q 045672 343 MISGLAQNG---------------YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH---------FKSM 398 (643)
Q Consensus 343 li~~~~~~g---------------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~---------~~~~ 398 (643)
.|..+-.++ +.-.|-..|++. |.. +-..+..|-++|.+.+|+++ ++-+
T Consensus 999 AIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 999 AIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred HHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence 222222211 111222223221 111 11122234555555555443 2333
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCC---
Q 045672 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILN---LDPQ--- 472 (643)
Q Consensus 399 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~p~--- 472 (643)
.++..-..|+...+.-.+.+....++++|..++.... -|.-.+..| ...+..-.+++.+.|.- -.|+
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar------~~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~ 1143 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR------EFSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQE 1143 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHH
Confidence 3332333355555555666666666666666554331 112222222 33334444444444421 1122
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHH
Q 045672 473 DPGTYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 473 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
....+..++..|.++|.+..|.+=|.
T Consensus 1144 R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1144 RKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHh
Confidence 12356677777888887776665543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.3e-06 Score=78.77 Aligned_cols=178 Identities=11% Similarity=0.023 Sum_probs=107.3
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---Ch---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHH
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQK---DV---ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY----ITI 375 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~ 375 (643)
...+..+...|.+.|++++|...|+++... +. ..|..+..++.+.|++++|+..++++.+. .|+. .++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHH
Confidence 345555666666677777777777665331 11 24555666666677777777777776653 2321 133
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 045672 376 VGVLFACSHA--------GFVEDGWNHFKSMKKFYGIDPGR-EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL 446 (643)
Q Consensus 376 ~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 446 (643)
..+..++.+. |+.++|.+.|+.+.+. .|+. ..+..+... +...... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 3333344333 5566666666666653 2322 122111111 0000000 0011234
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 447 LGACKVHRNTDLAICAAKKILNLDPQD---PGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 447 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
...+...|+++.|+..++++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556888999999999999999987764 468899999999999999999999988754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-07 Score=58.91 Aligned_cols=34 Identities=41% Similarity=0.563 Sum_probs=29.3
Q ss_pred hCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 045672 201 VGFESDVFVRSALIDIYAKLGELRNAECVFNEMP 234 (643)
Q Consensus 201 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 234 (643)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888889999999999999999998884
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.2e-05 Score=79.77 Aligned_cols=447 Identities=12% Similarity=0.036 Sum_probs=243.9
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHH--HHccCCHHHHHHHHHHHHHcCCCCchhHHHH
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKC--CLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 114 (643)
.|..+|..+..+|.+.|++..|+++|.+.... .|+. +|...-.+ -+..|.++++...++..+..- .......+.
T Consensus 594 kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~g 669 (1238)
T KOG1127|consen 594 KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNG 669 (1238)
T ss_pred hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhh
Confidence 47778999999999999999999999887654 3432 22222222 245688888888888776532 111112223
Q ss_pred HHHHHH-------cCCChhHHHHHHccCCC-----------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh
Q 045672 115 LLNMHV-------KFSLLEEAQVLFDQMPE-----------RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMF 176 (643)
Q Consensus 115 li~~~~-------~~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 176 (643)
|...+. -.|-...|...|++-.+ .+...|-.+- .|..+|-+... . .|+..
T Consensus 670 LaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----------dac~~f~q~e~-~-~vn~h 737 (1238)
T KOG1127|consen 670 LAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----------DACYIFSQEEP-S-IVNMH 737 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------HHHHHHHHhcc-c-chHHH
Confidence 333332 23333344444433221 1122222221 23333333321 1 23333
Q ss_pred hHHHHHHHHhchhhH---H----HHHHHHHHhCCCCchhHHHHHHHHHHH----cC----CHHHHHHHHhhCC---CCCc
Q 045672 177 TYSAVLRACDSLIIL---R----QLHCGIIKVGFESDVFVRSALIDIYAK----LG----ELRNAECVFNEMP---TRDL 238 (643)
Q Consensus 177 t~~~ll~a~~~~~~~---~----~~~~~~~~~g~~~~~~~~~~li~~y~~----~g----~~~~A~~~f~~~~---~~~~ 238 (643)
....+..-.-..+.. + ..-.......+..+...|..|...|.+ +| +...|...+.... ..+.
T Consensus 738 ~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~ 817 (1238)
T KOG1127|consen 738 YLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNE 817 (1238)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccH
Confidence 333222212111111 1 011111111223334555555554443 22 2334556665443 3567
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHH
Q 045672 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYC 317 (643)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~ 317 (643)
..||.|.-. ...|++.-|...|-+-... .+-...+|..+.-.|....+++.|.+.+..+.. .+.+..-|-.....-.
T Consensus 818 ~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~e 895 (1238)
T KOG1127|consen 818 GLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPE 895 (1238)
T ss_pred HHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHH
Confidence 788877655 5567777777777655543 234566777777777888899999999988888 4445555544444445
Q ss_pred hcCCHHHHHHHHhhc--------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---------CCCCCCHHHHHHHHH
Q 045672 318 KCGSLEDAMSVFSRM--------IQKDVISWSTMISGLAQNGYSQEALKLFESMKV---------SRIKPNYITIVGVLF 380 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m--------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---------~g~~p~~~t~~~ll~ 380 (643)
..|+.-++..+|..- ..++..-|-+......++|+.++-+..-+++-. .|.+-+...|.....
T Consensus 896 avG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gs 975 (1238)
T KOG1127|consen 896 AVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGS 975 (1238)
T ss_pred HHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHh
Confidence 567777777777652 113444555555555667776655544443321 123334667777776
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH----HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 045672 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC----MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNT 456 (643)
Q Consensus 381 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~ 456 (643)
..-+.+.+..|.+...+...-....-+...|+. +...+...|.++.|..-+...+...|...-.+-+.. .-.+++
T Consensus 976 tlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf 1054 (1238)
T KOG1127|consen 976 TLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDF 1054 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHH
Confidence 677777777766665554432222334444553 334455567788777766665544455554444444 346789
Q ss_pred HHHHHHHHHHHhcCCCCc---chHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 457 DLAICAAKKILNLDPQDP---GTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 457 ~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+.+...|++++.+--++. .....++.....++.-+.|....-+...
T Consensus 1055 ~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1055 FSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 999999999988754433 2344455555667777777776655543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00078 Score=78.31 Aligned_cols=259 Identities=10% Similarity=0.012 Sum_probs=169.5
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC----CCc----chHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CC--CHHHHHHH
Q 045672 213 LIDIYAKLGELRNAECVFNEMPT----RDL----VVWNSIIGGFAQNSDVDEALNLYKRMKRAGF---AA--DQSTLTSV 279 (643)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~l 279 (643)
+...+...|++++|...+++... .+. ..++.+...+...|++++|...+.+.....- .+ ...++..+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 33456678999999988877432 221 2445666677889999999999988765311 11 12344455
Q ss_pred HHHHhcCChhHhHHHHHHHHhh----c-CC----chhHHhHHHHHHHhcCCHHHHHHHHhhcCC------C--ChhhHHH
Q 045672 280 LRACTGLALLELGTQVHVHVLK----Y-DH----DLILNNALLDMYCKCGSLEDAMSVFSRMIQ------K--DVISWST 342 (643)
Q Consensus 280 l~a~~~~~~~~~a~~i~~~~~~----~-~~----~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~------~--~~~~~~~ 342 (643)
...+...|+++.|...+..... . .+ ....+..+...+...|++++|...+++... + ....+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 6667889999999999988876 1 11 123344566677888999999988877622 1 1234455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---hHHHHH
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRI-KPNYITI-----VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG---REHYSC 413 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ 413 (643)
+...+...|+.++|.+.+++.....- ......+ ...+..+...|+.+.|...+...... ..... ...+..
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~ 696 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHH
Confidence 66678889999999999988754210 1111111 01123345578999998887765431 11111 111345
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 414 MIDLLGRAGKLQEAVKLIHEM-------PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
+..++...|+.++|...+++. +..++ ..+...+..++...|+.++|...+++++++...
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 677788999999999988776 22222 234555667789999999999999999987644
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00025 Score=72.54 Aligned_cols=266 Identities=11% Similarity=0.023 Sum_probs=169.0
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHH-HHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhH---
Q 045672 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF-AADQSTLTS-VLRACTGLALLELGTQVHVHVLK-YDHDLILNNA--- 311 (643)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~-ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~--- 311 (643)
...|..+...+...|+.+.+...+.+..+... .++...... ....+...|+++.+..++..+.+ .+.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~ 85 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHH
Confidence 34566677777778888888777766654321 223322222 22344678999999999999998 5555545442
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 045672 312 LLDMYCKCGSLEDAMSVFSRMIQKD---VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388 (643)
Q Consensus 312 Li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 388 (643)
+.......|..+.+.+.+......+ ...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 2222233566667777666532222 2334455667889999999999999998853 33356677788889999999
Q ss_pred HHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--CHHH-H-H--HHHHHHHHcCCHHHH
Q 045672 389 EDGWNHFKSMKKFYGIDPGR--EHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP--DAVT-W-R--ALLGACKVHRNTDLA 459 (643)
Q Consensus 389 ~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p--~~~~-~-~--~ll~~~~~~g~~~~a 459 (643)
++|..+++...+.....|+. ..|..+...+...|++++|.+.+++. ...| .... . + .++.-+...|..+.+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 99999999887632222332 34567888999999999999999986 2223 2111 1 1 223334445544333
Q ss_pred HHH---HHHHHhcCCC--CcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 460 ICA---AKKILNLDPQ--DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 460 ~~~---~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
.+. ........|. ....-...+.++...|+.++|.+.++.+....
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 333 2221111122 12233367778889999999999999987643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-05 Score=72.80 Aligned_cols=118 Identities=12% Similarity=0.079 Sum_probs=95.5
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCC--HHHH
Q 045672 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGA-CKVHRN--TDLA 459 (643)
Q Consensus 385 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~--~~~a 459 (643)
.++.+++...++...+ .-+.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5666777777777665 34557788888888999999999999998887 4455 55567777766 467676 5999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
..+++++++.+|+++.++..++..+.+.|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999998754
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-07 Score=57.80 Aligned_cols=33 Identities=36% Similarity=0.507 Sum_probs=22.1
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHHHHccCC
Q 045672 104 GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMP 136 (643)
Q Consensus 104 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 136 (643)
|+.||..+||.||.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 556666666666666666666666666666663
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0011 Score=67.65 Aligned_cols=338 Identities=15% Similarity=0.132 Sum_probs=190.9
Q ss_pred HHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhH
Q 045672 115 LLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191 (643)
Q Consensus 115 li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 191 (643)
=++.+.+.|++++|.+.-+++.. .|...+..-+-+..+.+++++|+.+.+.-.. ..+++..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~---------- 81 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSF---------- 81 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchh----------
Confidence 35666677777777777766654 2445556666667777777777744433210 0011100
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHH--HHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 045672 192 RQLHCGIIKVGFESDVFVRSALIDIY--AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF 269 (643)
Q Consensus 192 ~~~~~~~~~~g~~~~~~~~~~li~~y--~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 269 (643)
. +=.+| .+.+..|+|...++.....+..+...-...+-+.|++++|+++|+.+.+.+.
T Consensus 82 -----------------~---fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 82 -----------------F---FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred -----------------h---HHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 0 12233 4789999999999966655655666667778889999999999999988764
Q ss_pred CC-CHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCC-chhHHhHHHHHHHhcCCHHHHHHHHhhc--------CCCC---
Q 045672 270 AA-DQSTLTSVLRACTGLALLELGTQVHVHVLKYDH-DLILNNALLDMYCKCGSLEDAMSVFSRM--------IQKD--- 336 (643)
Q Consensus 270 ~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~Li~~y~~~g~~~~A~~~~~~m--------~~~~--- 336 (643)
.- |...-..++.+-.. -.+. ........+. +-..+-...-.+...|++.+|+++++.. .+.|
T Consensus 142 dd~d~~~r~nl~a~~a~----l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~e 216 (652)
T KOG2376|consen 142 DDQDEERRANLLAVAAA----LQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNE 216 (652)
T ss_pred chHHHHHHHHHHHHHHh----hhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccch
Confidence 33 22222222221111 1111 1111111221 2223333445677899999999999876 1111
Q ss_pred --hh-----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCCHHH--HHHHHHHhHHhc-
Q 045672 337 --VI-----SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT----IVGVLFACSHAGFVED--GWNHFKSMKKFY- 402 (643)
Q Consensus 337 --~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~--a~~~~~~~~~~~- 402 (643)
.. .--.|.-.+...|+.++|..++...++.. .+|... -|.|+ +...-.++-. ++..++.....+
T Consensus 217 Eeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~ 294 (652)
T KOG2376|consen 217 EEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLA 294 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhH
Confidence 11 12234445677899999999999998875 455422 22222 3332222222 122222211100
Q ss_pred ---------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHH-HH-cCCHHHHHHHHHHHHhcC
Q 045672 403 ---------GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYE-PDAVTWRALLGAC-KV-HRNTDLAICAAKKILNLD 470 (643)
Q Consensus 403 ---------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~-~~-~g~~~~a~~~~~~~~~~~ 470 (643)
.-.-...--++++.+| .+..+.+.++-...+.. |.. .+.+++..+ .. ......+..++....+..
T Consensus 295 ~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~ 371 (652)
T KOG2376|consen 295 EFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGH 371 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccC
Confidence 0000111123444444 45556777777777533 443 344444442 22 225778888888888888
Q ss_pred CCC-cchHHHHHHHHHccCChhHHHHHHH
Q 045672 471 PQD-PGTYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 471 p~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
|.+ ......++......|+|+.|.+++.
T Consensus 372 p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 372 PEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 886 4456667777899999999999998
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.4e-06 Score=71.09 Aligned_cols=121 Identities=9% Similarity=-0.001 Sum_probs=75.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 045672 359 LFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE 437 (643)
Q Consensus 359 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 437 (643)
+|++..+ +.|+. +.....++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ...
T Consensus 15 ~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 15 ILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4444444 23443 33445566667777777777777665 22335566666777777777777777777666 333
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 438 P-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 438 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
| +...|..+..++...|+.++|+..++++++..|+++..+...+.+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3 45566666666777777777777777777777777766666555543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00028 Score=75.88 Aligned_cols=174 Identities=13% Similarity=0.076 Sum_probs=119.9
Q ss_pred HHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 045672 323 EDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399 (643)
Q Consensus 323 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 399 (643)
..|...+...+ ..+...||++.-. ...|.+.-|..-|-+-... .+-+..+|..+.-.|.+..+++.|...|....
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 35666666553 3567788887665 5556776666666555443 24456788888878889999999999998776
Q ss_pred HhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-------
Q 045672 400 KFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-------PYEPDAVTWRALLGACKVHRNTDLAICAAK------- 464 (643)
Q Consensus 400 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~------- 464 (643)
. +.| +...|-...-.....|+.-++..+|..- +.-|+...|.....-...+|+.++-+...+
T Consensus 878 S---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 878 S---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred h---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 4 344 5566666666666778888888887652 233666666666555667777666554444
Q ss_pred ---HHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 465 ---KILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 465 ---~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
+.+...|+...+|...+....+.+.+++|.+...+..
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455678888899999988888888888887776643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00063 Score=71.63 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=82.1
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhC-C--------CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCH-G--------VRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPE 108 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 108 (643)
+-+.|..|.+.+.+..+.+-|.-.+-.|... | -.|+ .+=..+.-.....|.+++|+.++.+-.+.+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---- 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---- 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence 4456999999999999988887777666431 1 1222 222223333457899999999999887643
Q ss_pred hhHHHHHHHHHHcCCChhHHHHHHccCCCC-CcchHHHHHHHHHhCCChhHHHHHHHHH
Q 045672 109 TFLVNILLNMHVKFSLLEEAQVLFDQMPER-NVVSWTTMISAYCDAKMNDKALELLIFM 166 (643)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 166 (643)
.|=..|-..|.|++|.++-+.-..- =..||..-...+-..++.+.|++.|++.
T Consensus 831 -----LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 831 -----LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred -----HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 3456677889999999987654331 1236666666777788899999998864
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00046 Score=69.54 Aligned_cols=409 Identities=14% Similarity=0.084 Sum_probs=221.4
Q ss_pred cCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhH
Q 045672 33 NTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD-SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFL 111 (643)
Q Consensus 33 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 111 (643)
....+|-+.|..-..+|+..|++++|++=-.+-.+. .|+ ...|+....++...|++++|..-|..-++.. +.+...
T Consensus 30 ~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L 106 (539)
T KOG0548|consen 30 MLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQL 106 (539)
T ss_pred ccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHH
Confidence 334458888999999999999999999876666654 454 6779999999999999999999999998874 356677
Q ss_pred HHHHHHHHHcCCChhHHHHHHccCC-----CCC--------cchHHHHHHHHHhCC-------ChhHHHHHHHHHHH---
Q 045672 112 VNILLNMHVKFSLLEEAQVLFDQMP-----ERN--------VVSWTTMISAYCDAK-------MNDKALELLIFMLR--- 168 (643)
Q Consensus 112 ~~~li~~~~~~g~~~~A~~~f~~m~-----~~~--------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~--- 168 (643)
++.|..++... ..+.+.|..-. ..+ ...|..++..+-+.- +.+......-.+..
T Consensus 107 ~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~ 183 (539)
T KOG0548|consen 107 KTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDE 183 (539)
T ss_pred HHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcc
Confidence 88888887111 11122221100 001 112222332222110 00000000000000
Q ss_pred -----CCCCCChhhHHHHHHHHhchhhHH-HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCcch
Q 045672 169 -----EGVRPNMFTYSAVLRACDSLIILR-QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT--RDLVV 240 (643)
Q Consensus 169 -----~g~~p~~~t~~~ll~a~~~~~~~~-~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~ 240 (643)
.|..+....-.. +.+..... .+-+.........-..-...|.++..+..+++.|.+-++...+ .++.-
T Consensus 184 ~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~ 259 (539)
T KOG0548|consen 184 LLFYASGIEILASMAEP----CKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITY 259 (539)
T ss_pred ccccccccccCCCCCCc----ccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHH
Confidence 000000000000 00000000 0000000000000001122344555555566666655554433 23333
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcC
Q 045672 241 WNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCG 320 (643)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g 320 (643)
++....+|...|.+.++...-....+.|.. ...-|+.+-.++ ..+..+|.+.+
T Consensus 260 ~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~--------------------------~r~g~a~~k~~ 312 (539)
T KOG0548|consen 260 LNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKAL--------------------------ARLGNAYTKRE 312 (539)
T ss_pred HHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHH--------------------------HHhhhhhhhHH
Confidence 445555666666666665555554443311 111121111111 12445677778
Q ss_pred CHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhH
Q 045672 321 SLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY-ITIVGVLFACSHAGFVEDGWNHFKSMK 399 (643)
Q Consensus 321 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 399 (643)
+++.|...|.+...+... -....+....++++.......- +.|.. .-...-...+.+.|++..|...+.+++
T Consensus 313 ~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 888888888775322111 1112233445555555554433 33442 112222556778899999999999988
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 045672 400 KFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAV-TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477 (643)
Q Consensus 400 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 477 (643)
+. .+-|...|....-+|.+.|.+.+|++-.+.. ...|+.. .|.-=..++....+++.|++.|++.++.+|++....
T Consensus 386 kr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 386 KR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred hc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 74 3557788999999999999998888765554 3345433 454445566777899999999999999999988777
Q ss_pred HHHHHHHHcc
Q 045672 478 ILLSNIYANS 487 (643)
Q Consensus 478 ~~l~~~~~~~ 487 (643)
..+.+++...
T Consensus 464 ~~~~rc~~a~ 473 (539)
T KOG0548|consen 464 DGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHh
Confidence 7776666543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-05 Score=70.02 Aligned_cols=106 Identities=17% Similarity=0.041 Sum_probs=90.6
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
+++...+ +.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|+..|+++++++|
T Consensus 15 ~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 15 ILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4444443 3454 3556788899999999999999987 4445 667889999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 472 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+++.++..++.++...|+.++|...++...+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999988754
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.9e-05 Score=83.01 Aligned_cols=192 Identities=16% Similarity=0.120 Sum_probs=96.6
Q ss_pred HHHHHHHHhcCChhHhHHHHHHHHhh-cCC-----chhHHhHHHHHHHhcCCHHHHHHHHhhcCCC-C-hhhHHHHHHHH
Q 045672 276 LTSVLRACTGLALLELGTQVHVHVLK-YDH-----DLILNNALLDMYCKCGSLEDAMSVFSRMIQK-D-VISWSTMISGL 347 (643)
Q Consensus 276 ~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~-----~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-~-~~~~~~li~~~ 347 (643)
|...+.-....++++.|+.+.+++.+ +.+ -..+|.+++++-.--|.-+...++|++..+- | ...|..|...|
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy 1540 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIY 1540 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33334444444444444444444444 211 1234445554444445555555555555432 2 23455555556
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHhcCCHH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP--GREHYSCMIDLLGRAGKLQ 425 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~ 425 (643)
.+.+..++|.++|+.|.+. +.-....|...+..+.+...-+.|.+++.++.+. ++- ......-.+.+-.+.|+.+
T Consensus 1541 ~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCch
Confidence 6666666666666666543 2233445555555555555555566655555542 111 2333444445555566666
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 045672 426 EAVKLIHEM--PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLD 470 (643)
Q Consensus 426 ~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 470 (643)
++..+|+.. ..+.-...|+.++..-.++|+.+.+..+|++++++.
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 666666554 111234456666666666666666666666666543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00013 Score=67.71 Aligned_cols=279 Identities=14% Similarity=0.141 Sum_probs=177.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhcC
Q 045672 211 SALIDIYAKLGELRNAECVFNEMPTR---DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTS-VLRACTGL 286 (643)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~ 286 (643)
++.+.-+.+..++.+|.+++..-.++ +....+.+..+|-...++..|-+.+.++-.. .|...-|.. -.+.+-+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 34444456666777777776655543 3345666667777777777777777777553 343333321 11222233
Q ss_pred ChhHhHHHHHHHHhhcCCchhHHhHH----HHHHHhcCCHHHHHHHHhhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045672 287 ALLELGTQVHVHVLKYDHDLILNNAL----LDMYCKCGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQNGYSQEALKLFE 361 (643)
Q Consensus 287 ~~~~~a~~i~~~~~~~~~~~~~~~~L----i~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~ 361 (643)
+.+..|..+...+... ....+-. .......+++..++.+.+..+. .+..+.+......-+.|++++|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 4444444444433320 1111110 1112346777788888888763 555566666666678899999999998
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-------------C--------hHHHHHHHH---
Q 045672 362 SMKVS-RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-------------G--------REHYSCMID--- 416 (643)
Q Consensus 362 ~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-------------~--------~~~~~~li~--- 416 (643)
...+- |..| ...|+..+ +..+.|+++.|+++..+++++ |++. | ..+-+.++.
T Consensus 169 aAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 169 AALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 88764 4444 45565544 445678889999888888774 5431 1 112344444
Q ss_pred ----HHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccC
Q 045672 417 ----LLGRAGKLQEAVKLIHEMP----YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488 (643)
Q Consensus 417 ----~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 488 (643)
.+.+.|+++.|.+.+..|| ...|++|...+.-. -..+++..+.+-+.-++++.|--+.++..++-+|++..
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH
Confidence 4568899999999999995 23577777665422 23567778888888889999877889999999999999
Q ss_pred ChhHHHHHHH
Q 045672 489 KWDEVAEVRK 498 (643)
Q Consensus 489 ~~~~a~~~~~ 498 (643)
-++-|..++.
T Consensus 325 yf~lAADvLA 334 (459)
T KOG4340|consen 325 YFDLAADVLA 334 (459)
T ss_pred HHhHHHHHHh
Confidence 9999988874
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.3e-05 Score=68.29 Aligned_cols=156 Identities=11% Similarity=0.106 Sum_probs=117.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 045672 312 LLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDG 391 (643)
Q Consensus 312 Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 391 (643)
-+-.|.+.|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3466888888887655544332221 01223667788888888877753 45677888899999999999999
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045672 392 WNHFKSMKKFYGIDPGREHYSCMIDLL-GRAGK--LQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKI 466 (643)
Q Consensus 392 ~~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 466 (643)
...|+...+. .+.+...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 93 ~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999998872 234677888888864 67787 59999999988 4455 5567888888899999999999999999
Q ss_pred HhcCCCCcchHH
Q 045672 467 LNLDPQDPGTYI 478 (643)
Q Consensus 467 ~~~~p~~~~~~~ 478 (643)
+++.|++..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999988765443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00024 Score=70.15 Aligned_cols=177 Identities=14% Similarity=0.116 Sum_probs=105.0
Q ss_pred CHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 045672 321 SLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYS--QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395 (643)
Q Consensus 321 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 395 (643)
+++++...++++.+ ++...|+...-.+.+.|+. ++++++++++.+.. +-|..+|.....++.+.|+++++++.+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 35566666655532 2333455444344444442 45666666666532 223556666666666667777777777
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----CCHHHHHHH
Q 045672 396 KSMKKFYGIDPGREHYSCMIDLLGRA---GK----LQEAVKLIHEM-PYEP-DAVTWRALLGACKVH----RNTDLAICA 462 (643)
Q Consensus 396 ~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~ 462 (643)
+.+.+. -+-+...|+.....+.+. |. .+++.++..++ ...| |...|+-+...+... ++..+|...
T Consensus 166 ~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 776653 122344444443333332 22 23455555333 4445 556788777777663 345678888
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHccC------------------ChhHHHHHHHHH
Q 045672 463 AKKILNLDPQDPGTYILLSNIYANSQ------------------KWDEVAEVRKTM 500 (643)
Q Consensus 463 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m 500 (643)
+.+++..+|+++.++..|+++|+... ..++|.++++.+
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 88888889999999999999998643 235677777777
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.5e-05 Score=69.91 Aligned_cols=134 Identities=17% Similarity=0.126 Sum_probs=110.1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 045672 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM--PYEPDAVTWRAL 446 (643)
Q Consensus 369 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 446 (643)
.|+......+-.++...|+-+.+..+...... ..+.+......++....+.|++.+|...|.+. +-.+|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55433335666777788888888777776554 33446667777889999999999999999988 445678899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 447 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
.-+|-+.|+++.|...|.+++++.|+++..+..|+..|.-.|+.+.|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999998887654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0019 Score=61.37 Aligned_cols=329 Identities=14% Similarity=0.064 Sum_probs=175.0
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCch-hHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHH---H
Q 045672 73 DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPET-FLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMI---S 148 (643)
Q Consensus 73 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~ 148 (643)
+..-..-+.+.+...|.+..|..-|...++.+ |+. .++-.-...|...|+-..|+.=|+...+.-+.-+.+-| .
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 44445556677777788888888777776532 332 23333456677788888887777776653333333333 4
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHH
Q 045672 149 AYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228 (643)
Q Consensus 149 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 228 (643)
.+.++|.+++|..=|+..+.. .|+..+-. .+..++...++. ......+..+...|+...|..
T Consensus 115 vllK~Gele~A~~DF~~vl~~--~~s~~~~~---eaqskl~~~~e~-------------~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQH--EPSNGLVL---EAQSKLALIQEH-------------WVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCcchhH---HHHHHHHhHHHH-------------HHHHHHHHHHhcCCchhhHHH
Confidence 677899999999999998865 34332221 111111111100 000112222333444444444
Q ss_pred HHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchh
Q 045672 229 VFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLI 307 (643)
Q Consensus 229 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~ 307 (643)
.. ..+++. .+.|...+..-..+|...|.+..|..-+..+.+ ...+..
T Consensus 177 ~i-------------------------------~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe 224 (504)
T KOG0624|consen 177 MI-------------------------------THLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE 224 (504)
T ss_pred HH-------------------------------HHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH
Confidence 44 444432 122333444444444444444444444444444 223333
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 045672 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387 (643)
Q Consensus 308 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 387 (643)
..--+-..+...|+.+.++...++..+-|+..-. +|..-....+..+.++.|.+ ....+.
T Consensus 225 ~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~----Cf~~YKklkKv~K~les~e~----------------~ie~~~ 284 (504)
T KOG0624|consen 225 GHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL----CFPFYKKLKKVVKSLESAEQ----------------AIEEKH 284 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh----HHHHHHHHHHHHHHHHHHHH----------------HHhhhh
Confidence 3444555666777777777777666443332111 11111112223333333322 123344
Q ss_pred HHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 045672 388 VEDGWNHFKSMKKFYGIDPG-----REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTDLAI 460 (643)
Q Consensus 388 ~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 460 (643)
+.++.+-.+...+. .|. ...+..+-.++...|++.+|+....+. .+.|| +.++---..+|.....++.|+
T Consensus 285 ~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI 361 (504)
T KOG0624|consen 285 WTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAI 361 (504)
T ss_pred HHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHH
Confidence 44454444544442 333 122334445566777888887776665 45565 567777777888888899999
Q ss_pred HHHHHHHhcCCCCcch
Q 045672 461 CAAKKILNLDPQDPGT 476 (643)
Q Consensus 461 ~~~~~~~~~~p~~~~~ 476 (643)
.-|+++.+.+++|..+
T Consensus 362 ~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 362 HDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHhcCcccHHH
Confidence 9999999998887543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.4e-05 Score=70.63 Aligned_cols=179 Identities=15% Similarity=0.068 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCch---hHHhHHHHHHHhcCCHHHHHHHHhhcCCCC---hh---hHH
Q 045672 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDL---ILNNALLDMYCKCGSLEDAMSVFSRMIQKD---VI---SWS 341 (643)
Q Consensus 272 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~---~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~---~~---~~~ 341 (643)
....+......+...|+++.|...++.+.+ .+.+. ..+..+...|.+.|++++|...|+++.+.+ .. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 455677777888999999999999999998 43333 466788899999999999999999985421 22 455
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 045672 342 TMISGLAQN--------GYSQEALKLFESMKVSRIKPNYI-TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412 (643)
Q Consensus 342 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 412 (643)
.+..++.+. |+.++|++.|+++... .|+.. ....+... .. . ..... ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~~---------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRLA---------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHHH---------HHHH
Confidence 555666554 7899999999999875 45532 22111111 00 0 00000 1123
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 413 CMIDLLGRAGKLQEAVKLIHEM----PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
.+...|.+.|++++|...+++. |..| ....|..+..++...|++++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5667788999999999988876 2223 245788888999999999999998888766555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.5e-05 Score=79.23 Aligned_cols=188 Identities=16% Similarity=0.152 Sum_probs=141.7
Q ss_pred cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045672 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381 (643)
Q Consensus 302 ~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 381 (643)
++|-...-..+...+.++|-...|..+|+++ ..|.-.|.+|+..|+..+|..+..+-.+ -+||+..|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3444556667888999999999999999875 4677889999999999999999888776 37889999999888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLA 459 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 459 (643)
....--+++|+++++....+ .-..+.....+.++++++.+.++.- .+.| ...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88877888999888776542 1111222233467777777777654 4444 345677777777777888888
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
.+.|...+.++|++...|+.+.-+|.+.|+-.+|...+++..+-+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 888888888888888888888888888888888888887777655
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.4e-05 Score=75.71 Aligned_cols=240 Identities=13% Similarity=0.092 Sum_probs=162.9
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHH
Q 045672 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAM 326 (643)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~ 326 (643)
+.++|+..+|.-.|+..++.. +-+...|.-|...-+..++-..|...+.+..+ .+.+..+.-+|.-.|...|.-.+|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456777777777777766653 22445666666666666666777777777777 4445666777777888888888888
Q ss_pred HHHhhcCCCC-hhhHHHHH---------HHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 045672 327 SVFSRMIQKD-VISWSTMI---------SGLAQNGYSQEALKLFESMK-VSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395 (643)
Q Consensus 327 ~~~~~m~~~~-~~~~~~li---------~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 395 (643)
+.|+.-.... ...|...- ..+.......+..++|-++. ..+.++|+.....|.-.|.-.|.+++|...|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 8776542110 00000000 11222223445666776664 4443456666666666688889999999999
Q ss_pred HHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 396 KSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAV-TWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 396 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
+.+.. ++| |...||.|...++...+.++|...|++. .++|.-+ ++-.|.-+|...|.+++|...|-.++.+.+.
T Consensus 454 ~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 454 EAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99976 456 6778999999999999999999999988 7788755 7777888899999999999999999887644
Q ss_pred C----------cchHHHHHHHHHccCChh
Q 045672 473 D----------PGTYILLSNIYANSQKWD 491 (643)
Q Consensus 473 ~----------~~~~~~l~~~~~~~g~~~ 491 (643)
+ ..+|..|=.++.-.++.|
T Consensus 531 s~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 531 SRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred ccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 1 124455544455555544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0001 Score=80.20 Aligned_cols=190 Identities=11% Similarity=0.032 Sum_probs=130.0
Q ss_pred HHHHHHHHhcCChhHh-HHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcC
Q 045672 276 LTSVLRACTGLALLEL-GTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQNG 351 (643)
Q Consensus 276 ~~~ll~a~~~~~~~~~-a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g 351 (643)
...+=.+.+..|..++ +.+++.++.+ ++...++.....++..-..... ..++..+-.|.....+.|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g 100 (694)
T PRK15179 31 LDLLEAALAEPGESEEAGRELLQQARQ----------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAH 100 (694)
T ss_pred HhHHHHHhcCcccchhHHHHHHHHHHH----------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcC
Confidence 3333344566665544 4666666543 3333333332222222221111 124667777888888899
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 045672 352 YSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 430 (643)
+.++|+.+++...+ +.|| ......+...+.+.+.+++|....+.... .-+-+......+..++.+.|++++|.++
T Consensus 101 ~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 101 RSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred CcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 99999999998887 5777 45666777888899999999988888876 3334566778888888999999999999
Q ss_pred HHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 045672 431 IHEMP-YEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479 (643)
Q Consensus 431 ~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 479 (643)
|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+-...|..
T Consensus 177 y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 177 FERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 98882 2344 6688888888889999999999999998876544444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0089 Score=60.57 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=55.5
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC--CCcchHHHHHH
Q 045672 71 RADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMIS 148 (643)
Q Consensus 71 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~ 148 (643)
+-|..+|..|++-+... .+++++..++++... ++.....|..-|..-.+..+++..+++|.+... -++..|..-|+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 45777888888766554 788888888888765 334556777777777778888888888877654 46667777665
Q ss_pred HH
Q 045672 149 AY 150 (643)
Q Consensus 149 ~~ 150 (643)
--
T Consensus 95 YV 96 (656)
T KOG1914|consen 95 YV 96 (656)
T ss_pred HH
Confidence 43
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0002 Score=74.60 Aligned_cols=217 Identities=13% Similarity=0.140 Sum_probs=165.4
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045672 202 GFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281 (643)
Q Consensus 202 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 281 (643)
+++|-...-..+...+..+|-...|..+|++. ..|...|.+|+..|+..+|..+..+..+ -+||+..|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 44566667778888999999999999999885 5688899999999999999999888777 4789999988888
Q ss_pred HHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHH
Q 045672 282 ACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALK 358 (643)
Q Consensus 282 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~ 358 (643)
...+..-++.|.++...... ..-..+.....+.++++++.+.|+.-.+- -..+|-....+..+.++++.|.+
T Consensus 466 v~~d~s~yEkawElsn~~sa-----rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISA-----RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred hccChHHHHHHHHHhhhhhH-----HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 88777778888877765532 11112222223468888888888765333 34578888888888888999998
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 359 LFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 359 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
.|..-.. ..|| ...|+.+-.+|.+.+.-.+|...+.+..+ ++ ..+...|...+-...+.|.+++|.+.+.++
T Consensus 541 aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 541 AFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 8888776 4666 56788888899999999999888888887 34 444555666666777888899988888776
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.6e-05 Score=67.82 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=83.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 484 (643)
+....-.+...+...|++++|.++|+-. ...| +..-|-.|...|...|++++|+..|.++..++|++|.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445556667788999999999999887 3445 4557888888899999999999999999999999999999999999
Q ss_pred HccCChhHHHHHHHHHHh
Q 045672 485 ANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 485 ~~~g~~~~a~~~~~~m~~ 502 (643)
...|+.+.|++-|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998875
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00042 Score=76.33 Aligned_cols=233 Identities=11% Similarity=0.057 Sum_probs=140.4
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045672 206 DVFVRSALIDIYAKLGELRNAECVFNEMPT--RD-LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282 (643)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 282 (643)
+...+..|+..|...+++++|.++.+...+ |+ ...|-.+...+.+.++.+++..+ .+.. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID---------------S 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------h
Confidence 455667788888888889988888876543 32 33444444466666776666555 3322 1
Q ss_pred HhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHH
Q 045672 283 CTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKL 359 (643)
Q Consensus 283 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 359 (643)
.....++.....++..+.....+...+..|..+|-+.|+.++|..+++++.+ .|+...|.+.-.|+.. +.++|+++
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 2222222222223333333334444566777777777777777777777743 3556677777777777 77777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 045672 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD 439 (643)
Q Consensus 360 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 439 (643)
+.+.+.. +...+.+..+.+++.++.. ..+-+...+--+..... ...+...-
T Consensus 172 ~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~------------~~~~~~~~ 222 (906)
T PRK14720 172 LKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVL------------GHREFTRL 222 (906)
T ss_pred HHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHH------------hhhccchh
Confidence 7766542 4445566677777777765 22222222222222111 11122223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 440 AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 440 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
+.++--+-..|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 4455556666778888888889999998888888888888888776
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.3e-06 Score=53.04 Aligned_cols=35 Identities=37% Similarity=0.703 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 372 (643)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0003 Score=76.71 Aligned_cols=192 Identities=14% Similarity=0.116 Sum_probs=137.0
Q ss_pred hHHHHHHHHHhCCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHH-HHHhhcCCchhHHhHHHHHHH
Q 045672 240 VWNSIIGGFAQNSDVDEAL-NLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH-VHVLKYDHDLILNNALLDMYC 317 (643)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~-~~~~~~~~~~~~~~~Li~~y~ 317 (643)
..+.+=.+.+.-|..++|- ++..+..+ ++.+.+.......+..-. ..+.+++.+...+-.|.....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~ 97 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALE 97 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3334444555667777663 34443332 233333333333332222 222337777889999999999
Q ss_pred hcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHH
Q 045672 318 KCGSLEDAMSVFSRMIQ--K-DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY-ITIVGVLFACSHAGFVEDGWN 393 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~ 393 (643)
..|.+++|+.+++...+ | +...+..+...+.+.+++++|+..+++.... .|+. .....+..++.+.|.+++|..
T Consensus 98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHHHH
Confidence 99999999999999853 4 4557788899999999999999999999884 5664 455566678899999999999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 045672 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM--PYEPDAVTWRALL 447 (643)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll 447 (643)
+|+++.. ..+-+...+..+...+-..|+.++|...|++. ...|-...|+.++
T Consensus 176 ~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 176 CFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 9999987 33345778999999999999999999999987 2334455555444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.3e-06 Score=53.77 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=32.0
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCH
Q 045672 40 SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADS 74 (643)
Q Consensus 40 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 74 (643)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.7e-05 Score=66.17 Aligned_cols=98 Identities=21% Similarity=0.310 Sum_probs=78.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 484 (643)
+......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455666777788888888888888776 3334 5567777777888889999999999999888998888899999999
Q ss_pred HccCChhHHHHHHHHHHhCC
Q 045672 485 ANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 485 ~~~g~~~~a~~~~~~m~~~g 504 (643)
...|++++|...++...+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 99999999999998877643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0051 Score=61.69 Aligned_cols=135 Identities=19% Similarity=0.177 Sum_probs=64.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCH
Q 045672 347 LAQNGYSQEALKLFESMKVSRIKPNYITIV-GVLFACSHAGFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGKL 424 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 424 (643)
+...|++++|+..++.+... .||...|. .....+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCCh
Confidence 33445555555555555442 34333332 2233445555555555555555441 333 33344445555555555
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 425 QEAVKLIHEM--PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 425 ~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
.+|...++.. ..+-|...|..|..+|...|+..++... .+..|...|+|++|.......++
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHHH
Confidence 5555555544 1222444555555555555554443332 22334455566666666655554
Q ss_pred C
Q 045672 503 R 503 (643)
Q Consensus 503 ~ 503 (643)
+
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00033 Score=69.90 Aligned_cols=121 Identities=21% Similarity=0.200 Sum_probs=106.5
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHH
Q 045672 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTD 457 (643)
Q Consensus 380 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~ 457 (643)
..+...|..++|+..+..+.+ ..+-|+.......+.+.+.++..+|.+.++++ ...|+ ...+-.+..++.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 345678999999999999987 45557777788899999999999999999988 55677 557778889999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 458 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+|+..++.....+|+|+..|..|+.+|...|+..++..-+.++..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00055 Score=62.95 Aligned_cols=154 Identities=13% Similarity=0.056 Sum_probs=93.8
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 045672 310 NALLDMYCKCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386 (643)
Q Consensus 310 ~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 386 (643)
..+-..|.-.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++..... +||..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 344445555566666555555532 1244445556666777777777777777766532 555667777777777777
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045672 387 FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPY--EPDAVTWRALLGACKVHRNTDLAICAAK 464 (643)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 464 (643)
+.++|..-|.+..+- ..-+...++.|.-.|.-.|+++.|..++...-. ..|..+-..+.-.....|++++|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777777766652 122344566666666667777777777766521 1255556666666667777777766655
Q ss_pred HH
Q 045672 465 KI 466 (643)
Q Consensus 465 ~~ 466 (643)
+-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.016 Score=58.84 Aligned_cols=438 Identities=13% Similarity=0.119 Sum_probs=248.4
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 116 (643)
-|+.+|+.||+-+..+ ..+++.+.++++... .+-....|..-+..-.+..+++..+.+|.+.+..-+ +...|..-+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 3788999999987766 999999999999853 233566788888888899999999999999988654 455665555
Q ss_pred HHHHc-CCChhHHH----HHHccCC------CCCcchHHHHHHH---------HHhCCChhHHHHHHHHHHHCCCCCChh
Q 045672 117 NMHVK-FSLLEEAQ----VLFDQMP------ERNVVSWTTMISA---------YCDAKMNDKALELLIFMLREGVRPNMF 176 (643)
Q Consensus 117 ~~~~~-~g~~~~A~----~~f~~m~------~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p~~~ 176 (643)
+.--+ .|+...+. +.|+-.. -..-..|+..+.- |..+.+.+...++|+++....+
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm----- 168 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM----- 168 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc-----
Confidence 43322 23333322 2222111 1233446655532 3334456677788888774321
Q ss_pred hHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC------CC-------------
Q 045672 177 TYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT------RD------------- 237 (643)
Q Consensus 177 t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------~~------------- 237 (643)
+++++++..-.......|..+..-++. -+...+-.|+++.+++.. ++
T Consensus 169 ------------~nlEkLW~DY~~fE~~IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~ 234 (656)
T KOG1914|consen 169 ------------HNLEKLWKDYEAFEQEINIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEI 234 (656)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHH
Confidence 112222222111111111111111111 011223344444443321 00
Q ss_pred --cchHHHHHHHHHhCCCh--------hHHHHHHHH-HHHcCCCCCHHHH-HH----HHHHHhcCCh-------hHhHHH
Q 045672 238 --LVVWNSIIGGFAQNSDV--------DEALNLYKR-MKRAGFAADQSTL-TS----VLRACTGLAL-------LELGTQ 294 (643)
Q Consensus 238 --~~~~~~li~~~~~~g~~--------~~A~~~~~~-m~~~g~~p~~~t~-~~----ll~a~~~~~~-------~~~a~~ 294 (643)
+..|-.+|.---.++-- ....-.+++ |.--+..|+..-. .. .-+.+...|+ .+++..
T Consensus 235 ~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 235 QQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 11243333322221110 011111111 1112333332211 00 1112222333 345555
Q ss_pred HHHHHhh--cCCchhHHhHHHHHHHhcC---CHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045672 295 VHVHVLK--YDHDLILNNALLDMYCKCG---SLEDAMSVFSRMIQ----KDVISWSTMISGLAQNGYSQEALKLFESMKV 365 (643)
Q Consensus 295 i~~~~~~--~~~~~~~~~~Li~~y~~~g---~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 365 (643)
+++..+. ...+..+|.++.+.--..- ..+.....+++... .-..+|-..+..-.+..-.+.|..+|.+..+
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~ 394 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE 394 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 5555555 3334444544443221111 13334444444422 2234677788877777778999999999999
Q ss_pred CCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--
Q 045672 366 SRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM---PYEPD-- 439 (643)
Q Consensus 366 ~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~-- 439 (643)
.+..+ +....++++.-++ +++..-|.++|+.=.+.+| .++.--.+.++-+.+.++-..|..+|++. .+.||
T Consensus 395 ~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks 471 (656)
T KOG1914|consen 395 DKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKS 471 (656)
T ss_pred ccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhh
Confidence 88888 5556667776554 6789999999998777544 34455578889999999999999999988 22333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----cchHHHHHHHHHccCChhHHHHHHHHH
Q 045672 440 AVTWRALLGACKVHRNTDLAICAAKKILNLDPQD----PGTYILLSNIYANSQKWDEVAEVRKTM 500 (643)
Q Consensus 440 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 500 (643)
...|..+|.--...|+...+.++-++....-|.+ ...-..+.+.|.-.+.+..-..-++.|
T Consensus 472 ~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 472 KEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 4689999999999999999999999888766622 123455667777777766555545444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.003 Score=62.54 Aligned_cols=224 Identities=13% Similarity=0.070 Sum_probs=126.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCC-hhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcC
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQS-TLTSVLRACTGLA-LLELGTQVHVHVLK-YDHDLILNNALLDMYCKCG 320 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g 320 (643)
+-..+...++.++|+.+..++++. .|+.. .+..--.++...+ .++++...+..+.+ .+.+..+|+...-.+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence 334444556666777776666653 34333 3333333334444 45666666666666 4445555654444444555
Q ss_pred CH--HHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CC----H
Q 045672 321 SL--EDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA---GF----V 388 (643)
Q Consensus 321 ~~--~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---g~----~ 388 (643)
+. +++...++.+.+ +|..+|+...-.+...|+++++++.++++++.+. -|...|+.....+.+. |. .
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccH
Confidence 42 556666666633 4566777777777778888888888888887653 2344455444444333 22 2
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC--------
Q 045672 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA----GKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHR-------- 454 (643)
Q Consensus 389 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-------- 454 (643)
++...+...+.+ ..+-+...|+-+..+|... ++..+|.+++.+. ...| +......|+..+....
T Consensus 200 e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~ 277 (320)
T PLN02789 200 DSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRD 277 (320)
T ss_pred HHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhh
Confidence 455666655554 2334566777776666663 3445677777665 3333 4556666777765422
Q ss_pred ----------CHHHHHHHHHHHHhcCCC
Q 045672 455 ----------NTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 455 ----------~~~~a~~~~~~~~~~~p~ 472 (643)
..++|..+++.+-+.+|-
T Consensus 278 ~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 278 TVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hhhccccccccHHHHHHHHHHHHhhCcH
Confidence 235566666666444553
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.3e-05 Score=75.29 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=96.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACK 451 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 451 (643)
...+|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| |...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445666666777888888888888763 244 3445677777777778888887766 2233 5555665666688
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
..++++.|+.+++++.+..|++..+|..|+.+|.+.|++++|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999998775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.005 Score=56.78 Aligned_cols=70 Identities=20% Similarity=0.152 Sum_probs=35.2
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhH
Q 045672 423 KLQEAVKLIHEM--PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492 (643)
Q Consensus 423 ~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 492 (643)
.+.+|.-+|++| +..|+..+.+-...++...|++++|+.+++.++..+++++.++..++-.-...|+-.+
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 344444444444 1334444455555555555555555555555555555555555555555445554433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.7e-06 Score=51.24 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=29.6
Q ss_pred cchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCC
Q 045672 39 SSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRA 72 (643)
Q Consensus 39 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 72 (643)
+.+||++|.+|++.|+++.|+++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4688999999999999999999999998888877
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=1e-05 Score=50.40 Aligned_cols=33 Identities=30% Similarity=0.591 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKP 370 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 370 (643)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888889999999989999999998888877
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00022 Score=71.94 Aligned_cols=128 Identities=11% Similarity=0.034 Sum_probs=99.9
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 045672 308 LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387 (643)
Q Consensus 308 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 387 (643)
+..+|+..+...++++.|..+|+++.+.++..+-.++..+...++..+|++++++..... +-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 345667777778899999999999987777677778888888888899999998888642 2344555555566788899
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 045672 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEP 438 (643)
Q Consensus 388 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 438 (643)
.+.|..+.+++.+ -.+-+..+|..|+..|.+.|++++|+..++.+|..|
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999998886 233356689999999999999999999999887544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0023 Score=58.47 Aligned_cols=164 Identities=14% Similarity=0.117 Sum_probs=112.7
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhhHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 045672 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTM---ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390 (643)
Q Consensus 314 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 390 (643)
-+...+|+.+.|...++.+..+=+.++... ..-+-..|++++|+++++..++.. +.|.+++.-=+...-..|.--+
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHH
Confidence 334456777777777776643322222221 112445788999999999988875 5566677655555556677678
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH---cCCHHHHHHHHHH
Q 045672 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKV---HRNTDLAICAAKK 465 (643)
Q Consensus 391 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~---~g~~~~a~~~~~~ 465 (643)
|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -..|- ...+..+...+.. ..+.+.|.+.|.+
T Consensus 139 aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 139 AIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred HHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888887777 46778899999999999999999999988888 33454 3344455555332 3478889999999
Q ss_pred HHhcCCCCcchHHHH
Q 045672 466 ILNLDPQDPGTYILL 480 (643)
Q Consensus 466 ~~~~~p~~~~~~~~l 480 (643)
.+++.|.+...+..+
T Consensus 217 alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 217 ALKLNPKNLRALFGI 231 (289)
T ss_pred HHHhChHhHHHHHHH
Confidence 999999665554444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0003 Score=60.45 Aligned_cols=113 Identities=9% Similarity=0.116 Sum_probs=85.0
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 045672 359 LFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY 436 (643)
Q Consensus 359 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 436 (643)
+|++... ..|+ ......+...+...|++++|.+.|+.+... .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455544 3444 344556667778888999999888888763 3446778888888888999999999888876 33
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 045672 437 EP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 437 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 475 (643)
.| +...+..+...+...|+++.|...++++++.+|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 4567777777888999999999999999999998764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.005 Score=68.15 Aligned_cols=169 Identities=13% Similarity=0.121 Sum_probs=92.4
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 045672 138 RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIY 217 (643)
Q Consensus 138 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y 217 (643)
.+...|..|+..|...+++++|.++.+...+. .|+...+-.. +...|
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~-------------------------------~G~l~ 75 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYI-------------------------------SGILS 75 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHH-------------------------------HHHHH
Confidence 35566777888888888888888888765543 4544333221 11133
Q ss_pred HHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHH
Q 045672 218 AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297 (643)
Q Consensus 218 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 297 (643)
.+.++.+++..+ .++.......++.-...+...|... .-+...+..+..+|.+.|..+++..+++
T Consensus 76 ~q~~~~~~~~lv-------------~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~ye 140 (906)
T PRK14720 76 LSRRPLNDSNLL-------------NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWE 140 (906)
T ss_pred Hhhcchhhhhhh-------------hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHH
Confidence 334443333222 2333333334443333333344332 2233355555556666666666666666
Q ss_pred HHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045672 298 HVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVS 366 (643)
Q Consensus 298 ~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 366 (643)
++.+ .+.+..+.|.+...|+.. ++++|..++.+.. ..|...+++.++.++|.++...
T Consensus 141 r~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 141 RLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc
Confidence 6666 444556666777777766 7777776655442 2355556666777777766653
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.055 Score=58.42 Aligned_cols=214 Identities=13% Similarity=0.119 Sum_probs=119.5
Q ss_pred HhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHH--ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhH
Q 045672 50 CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCL--ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127 (643)
Q Consensus 50 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 127 (643)
...+++..|+....++++. .||. .|..+++++. +.|..++|..+++.....+.. |..+...+-.+|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4457788888888777764 3443 3555666653 678888888777776655543 67778888888888888888
Q ss_pred HHHHHccCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH-------------
Q 045672 128 AQVLFDQMPE--RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR------------- 192 (643)
Q Consensus 128 A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~------------- 192 (643)
|..++++..+ |+......+..+|++.+.+.+-.+.--+|.+ .+.-+.+.|-++++...+...-.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 8888888776 4444444555667776666443333222222 22334555555555432211100
Q ss_pred HHHHHHHHhC-CCCchhHHHHHHHHHHHcCCHHHHHHHHhh-----CCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 045672 193 QLHCGIIKVG-FESDVFVRSALIDIYAKLGELRNAECVFNE-----MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266 (643)
Q Consensus 193 ~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (643)
...+.+++.+ -..+..-.---....-..|.+++|..++.. ...-+...-+--+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 1122222222 111111111122233456677777777622 2222333444555666667777777777777776
Q ss_pred cC
Q 045672 267 AG 268 (643)
Q Consensus 267 ~g 268 (643)
.|
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 65
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0031 Score=57.69 Aligned_cols=162 Identities=13% Similarity=0.163 Sum_probs=126.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGV-LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
.|..++-+....|+.+.|...++++... + |...-...+ .--+-..|++++|.++++.+.++ -+.|...|-.=+.+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 4555666677789999999999998775 2 543322221 11234568999999999999984 35567777777777
Q ss_pred HHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccC---ChhH
Q 045672 418 LGRAGKLQEAVKLIHEM--PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ---KWDE 492 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 492 (643)
.-..|+--+|++-+... .+-.|...|.-+...|...|+++.|.-.+++++-..|-++..+..+++.+.-.| +.+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77788888888776655 455799999999999999999999999999999999999999999999987666 5667
Q ss_pred HHHHHHHHHhCC
Q 045672 493 VAEVRKTMRARG 504 (643)
Q Consensus 493 a~~~~~~m~~~g 504 (643)
|++++.+..+-.
T Consensus 210 arkyy~~alkl~ 221 (289)
T KOG3060|consen 210 ARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHhC
Confidence 888888877644
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0026 Score=58.59 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=112.1
Q ss_pred cCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 045672 350 NGYSQEAL-KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428 (643)
Q Consensus 350 ~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 428 (643)
-++.++-+ ++.+.+.......+......-...|.+.|++++|.+..... -+.+....=+..+.|..+++-|.
T Consensus 85 e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~ 157 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAE 157 (299)
T ss_pred cchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 34555555545555455555556789999999998887652 23455555567788899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 429 KLIHEMPYEPDAVTWRALLGACKV----HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 429 ~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+.+++|..-.+..|.+.|..++.+ .+.+..|.-+|+++-+.-|+.+.+....+.++...|+|++|..+++...++.
T Consensus 158 ~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 158 KELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 999999654567788877777654 3478899999999999888888899999999999999999999999998764
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.3e-05 Score=47.54 Aligned_cols=31 Identities=13% Similarity=0.350 Sum_probs=27.3
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHhCCC
Q 045672 40 SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGV 70 (643)
Q Consensus 40 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 70 (643)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0008 Score=58.56 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCCHHH
Q 045672 385 AGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEMP-YEPDA----VTWRALLGACKVHRNTDL 458 (643)
Q Consensus 385 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~g~~~~ 458 (643)
.++...+...++.+.+.++-.| .....-.+...+...|++++|.+.|+... ..||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555321111 11223334455556666666666665551 11222 123334455566666666
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHH
Q 045672 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKT 499 (643)
Q Consensus 459 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 499 (643)
|+..++.. ...+-.+..+..++++|...|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22222445666677777777777777776654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00027 Score=55.79 Aligned_cols=92 Identities=23% Similarity=0.282 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccC
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 488 (643)
+..+...+...|++++|...+++. ...|+ ...+..+...+...++++.|...+++.....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777888888888888776 33343 3566677777888899999999999999888888888889999999999
Q ss_pred ChhHHHHHHHHHHh
Q 045672 489 KWDEVAEVRKTMRA 502 (643)
Q Consensus 489 ~~~~a~~~~~~m~~ 502 (643)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998887764
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.4e-05 Score=46.77 Aligned_cols=31 Identities=32% Similarity=0.657 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRI 368 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 368 (643)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.2e-05 Score=59.44 Aligned_cols=78 Identities=22% Similarity=0.336 Sum_probs=46.5
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHH
Q 045672 421 AGKLQEAVKLIHEM-PYEP---DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV 496 (643)
Q Consensus 421 ~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 496 (643)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666555 1112 334455566666677777777777766 555565555666667777777777777777
Q ss_pred HHH
Q 045672 497 RKT 499 (643)
Q Consensus 497 ~~~ 499 (643)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=9.7e-05 Score=54.88 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccC-ChhHHHHHHHHHHh
Q 045672 439 DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ-KWDEVAEVRKTMRA 502 (643)
Q Consensus 439 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 502 (643)
+..+|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46688888899999999999999999999999999999999999999999 79999999988765
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00051 Score=57.37 Aligned_cols=93 Identities=15% Similarity=0.105 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---cchHHHHHH
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEM-PYEPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQD---PGTYILLSN 482 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 482 (643)
+..++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344445555556666665555554 11222 1234445555666666666666666666655543 334556666
Q ss_pred HHHccCChhHHHHHHHHHHhC
Q 045672 483 IYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 483 ~~~~~g~~~~a~~~~~~m~~~ 503 (643)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.001 Score=55.57 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=64.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 045672 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD----AVTWRALLG 448 (643)
Q Consensus 375 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~ 448 (643)
+..+...+...|++++|.+.|..+.+.+.-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555566666666666666655311111 1234555666777777777777777665 22232 345666667
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 045672 449 ACKVHRNTDLAICAAKKILNLDPQDPGTY 477 (643)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 477 (643)
.+...|+.+.|...++++++..|+++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 77788888888888888888888775443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00018 Score=52.61 Aligned_cols=58 Identities=26% Similarity=0.330 Sum_probs=48.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 446 LLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 446 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455778889999999999999999988889999999999999999999998888753
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0023 Score=55.66 Aligned_cols=125 Identities=15% Similarity=0.139 Sum_probs=96.1
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCch--hHHHH
Q 045672 40 SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRAD---SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPET--FLVNI 114 (643)
Q Consensus 40 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~ 114 (643)
..|..++..+. .++...+...++.+.... +.+ ....-.+...+...|++++|...|+.++.....++. ...-.
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 35777777774 889999999999998753 223 233444557778899999999999999997744432 34556
Q ss_pred HHHHHHcCCChhHHHHHHccCCCC--CcchHHHHHHHHHhCCChhHHHHHHHHH
Q 045672 115 LLNMHVKFSLLEEAQVLFDQMPER--NVVSWTTMISAYCDAKMNDKALELLIFM 166 (643)
Q Consensus 115 li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 166 (643)
|...+...|++++|+..++....+ ....+......|.+.|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788899999999999999887653 3445677788999999999999999864
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0047 Score=65.44 Aligned_cols=61 Identities=23% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 441 VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 441 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..+.++.-.....|++++|...++++++++| +..+|..++.+|...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444344445666666666666666666 345666666666666666666666655544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00074 Score=68.39 Aligned_cols=107 Identities=16% Similarity=0.051 Sum_probs=84.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 045672 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRN 455 (643)
Q Consensus 378 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 455 (643)
-...+...|++++|++.|..+.+. -+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345566789999999999999873 3345678888888999999999999998887 4455 45578888888999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHc
Q 045672 456 TDLAICAAKKILNLDPQDPGTYILLSNIYAN 486 (643)
Q Consensus 456 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 486 (643)
+++|+..++++++++|+++.....+..+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988776666554433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0013 Score=59.13 Aligned_cols=81 Identities=19% Similarity=0.139 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 045672 409 EHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483 (643)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 483 (643)
..+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|+..++++++..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 35566666777777777777777765 22222 34677777788889999999999999999999888888888888
Q ss_pred HHccCC
Q 045672 484 YANSQK 489 (643)
Q Consensus 484 ~~~~g~ 489 (643)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0052 Score=59.97 Aligned_cols=143 Identities=15% Similarity=0.201 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA-CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467778888888888899999999987543 2233444433333 33356777799999999985 4566778899999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 045672 417 LLGRAGKLQEAVKLIHEM-PYEPDA----VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 484 (643)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+....+.+++.+.-|++. ....+.+-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHh
Confidence 999999999999999987 222333 4899999999999999999999999999988754 344444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0014 Score=61.60 Aligned_cols=97 Identities=21% Similarity=0.207 Sum_probs=66.1
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDA-VTWRALLGACKVHRNTDL 458 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~ 458 (643)
..+.+++++|...|...++ +.| |...|..-..+|.+.|.++.|.+-.+.. .+.|.. .+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3456677777777777665 333 4555555566777777777777665554 455543 377888888888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHH
Q 045672 459 AICAAKKILNLDPQDPGTYILLS 481 (643)
Q Consensus 459 a~~~~~~~~~~~p~~~~~~~~l~ 481 (643)
|++.|+++++++|++......|-
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHH
Confidence 88888888888888874444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0017 Score=58.20 Aligned_cols=93 Identities=13% Similarity=-0.043 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 482 (643)
...|..+...+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445667777788889999999888877 22232 3478888888999999999999999999999998888888888
Q ss_pred HHH-------ccCChhHHHHHHHHH
Q 045672 483 IYA-------NSQKWDEVAEVRKTM 500 (643)
Q Consensus 483 ~~~-------~~g~~~~a~~~~~~m 500 (643)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888776666554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00052 Score=64.38 Aligned_cols=87 Identities=24% Similarity=0.256 Sum_probs=76.8
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHH
Q 045672 416 DLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493 (643)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 493 (643)
+-+.+.+++++|+..|.+. .+.| |.+.|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456789999999999887 6666 5666677778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 045672 494 AEVRKTMRA 502 (643)
Q Consensus 494 ~~~~~~m~~ 502 (643)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999987765
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0022 Score=50.35 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 045672 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 400 (643)
|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.++...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555566666666665555431 11223344444444455555555555554443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.02 Score=59.11 Aligned_cols=207 Identities=13% Similarity=0.168 Sum_probs=107.5
Q ss_pred HHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 045672 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT 277 (643)
Q Consensus 198 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 277 (643)
+.++|-.|+... +...++-.|++.+|-++|.+- |.-..|+++|.+|+--
T Consensus 626 ~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~------------------G~enRAlEmyTDlRMF---------- 674 (1081)
T KOG1538|consen 626 RKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS------------------GHENRALEMYTDLRMF---------- 674 (1081)
T ss_pred HHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc------------------CchhhHHHHHHHHHHH----------
Confidence 444555565544 445566678888888887653 4444555555444321
Q ss_pred HHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 045672 278 SVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEAL 357 (643)
Q Consensus 278 ~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 357 (643)
-..+-+...|.-++-+.+.+.-.....++.--.+...++...|+.++|..+ ...+|-.+-++
T Consensus 675 D~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i------------------~~d~gW~d~li 736 (1081)
T KOG1538|consen 675 DYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEI------------------CGDHGWVDMLI 736 (1081)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhh------------------hhcccHHHHHH
Confidence 011111222222222222221111111111112345566677777777554 34455555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC-C
Q 045672 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP-Y 436 (643)
Q Consensus 358 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 436 (643)
++-+++.. .+..+...+...+.+...+..|-++|.+|-. ...++++....+++++|..+-++.| .
T Consensus 737 dI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 737 DIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred HHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccc
Confidence 55554432 2334455555555566667777788877743 2456777788888888888888774 3
Q ss_pred CCCHHH-HHH----------HHHHHHHcCCHHHHHHHHHHHH
Q 045672 437 EPDAVT-WRA----------LLGACKVHRNTDLAICAAKKIL 467 (643)
Q Consensus 437 ~p~~~~-~~~----------ll~~~~~~g~~~~a~~~~~~~~ 467 (643)
.||+.. |.. .-.++.+.|+..+|.++++++.
T Consensus 803 ~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 803 KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 455431 111 1134455555666666665553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0033 Score=63.72 Aligned_cols=104 Identities=10% Similarity=-0.044 Sum_probs=82.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG 422 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 422 (643)
....+...|++++|+++|++.++.. +-+...+..+..++.+.|++++|+..++.+.+. -+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 3456678899999999999998853 334677778888999999999999999999873 2346778888999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 045672 423 KLQEAVKLIHEM-PYEPDAVTWRALLGA 449 (643)
Q Consensus 423 ~~~~A~~~~~~m-~~~p~~~~~~~ll~~ 449 (643)
++++|...|++. ...|+.......+..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999887 555665554444433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.17 Score=50.05 Aligned_cols=105 Identities=21% Similarity=0.298 Sum_probs=72.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChh
Q 045672 210 RSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALL 289 (643)
Q Consensus 210 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 289 (643)
.+..|.-+...|+...|.++-.+..-||-.-|-..+.+++..++|++-..+-.. +-.+..|-.++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566778888888888888778888888888888888888877665321 12346777777777777777
Q ss_pred HhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHH
Q 045672 290 ELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSV 328 (643)
Q Consensus 290 ~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~ 328 (643)
.+|..+...+ .+..-+.+|.++|++.+|.+.
T Consensus 254 ~eA~~yI~k~--------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPKI--------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHhC--------ChHHHHHHHHHCCCHHHHHHH
Confidence 7766655542 125566777777777777554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.18 Score=49.90 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=56.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 045672 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392 (643)
Q Consensus 313 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 392 (643)
+.-+...|+...|.++-.+..-||..-|-..+.+|+..+++++-..+... . -.++-|..++.+|.+.|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCCCHHHHH
Confidence 34444556666666666666556666666666666666666554443221 1 12355556666666666666666
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 045672 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431 (643)
Q Consensus 393 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 431 (643)
.+...+. +..-+.+|.++|++.+|.+.-
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHH
Confidence 5554421 133455666666666665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0078 Score=54.11 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=88.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 045672 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413 (643)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 413 (643)
....+..+...+...|++++|+..|++.......+. ...+..+...+.+.|++++|...+.+..+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 345677777788888899999998888876443332 356677777888888888888888887762 2224556666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCC
Q 045672 414 MIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 489 (643)
+...|...|+...+..-++.. ...++.|.+.++++++.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 677777777766554332221 123677889999999988876 5555565555554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0078 Score=57.01 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=86.4
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHc--CCHHHHHHHHHHHHhcCCCCcchHHH
Q 045672 405 DPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGAC-KVH--RNTDLAICAAKKILNLDPQDPGTYIL 479 (643)
Q Consensus 405 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~--g~~~~a~~~~~~~~~~~p~~~~~~~~ 479 (643)
+-|...|..|...|.+.|+++.|..-|.+. .+.| +...+..+..++ ... ....++..++++++..+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 557889999999999999999999999887 3333 455666666663 232 35678999999999999999999999
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCcCC
Q 045672 480 LSNIYANSQKWDEVAEVRKTMRARGITKEP 509 (643)
Q Consensus 480 l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 509 (643)
|+..+...|++.+|...|+.|.+..-..+|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987644333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0068 Score=59.37 Aligned_cols=156 Identities=16% Similarity=0.085 Sum_probs=109.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH-------------H
Q 045672 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH-------------Y 411 (643)
Q Consensus 345 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~ 411 (643)
.++...|+.++|...--..++.. ..+......--.++.-.++.+.|...|++..+ +.|+... +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHH
Confidence 45667888888887766655432 11111111111233456778888888877654 3444221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 412 SCMIDLLGRAGKLQEAVKLIHEM-PYEP-----DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
.-=..-..+.|++.+|.+.+.+. .+.| +...|........+.|+.++|+.--+++++++|.-..+|..-++++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 11123456889999999999887 4444 44556666667788999999999999999999998889999999999
Q ss_pred ccCChhHHHHHHHHHHhCC
Q 045672 486 NSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 486 ~~g~~~~a~~~~~~m~~~g 504 (643)
..++|++|.+-+++..+..
T Consensus 333 ~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999998887643
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0003 Score=52.04 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=45.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
...|++++|+..++++++..|++..++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999889999999999999999999988877653
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0036 Score=49.79 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=69.6
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhCCC-CCCHhhHHHHHHHHHccC--------CHHHHHHHHHHHHHcCCCCchhH
Q 045672 41 SLLDDFTRFCYQRDLPRAMKAMHAMQCHGV-RADSVTYAELIKCCLARH--------AVEEAKLVHNHVLSGGFEPETFL 111 (643)
Q Consensus 41 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 111 (643)
|-...|..+..++++.....+|+.+++.|+ .|+..+|+.++.+.+++. ++-....+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 455667777788999999999999999999 899999999999987643 24567889999999999999999
Q ss_pred HHHHHHHHHc
Q 045672 112 VNILLNMHVK 121 (643)
Q Consensus 112 ~~~li~~~~~ 121 (643)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0011 Score=48.38 Aligned_cols=61 Identities=25% Similarity=0.395 Sum_probs=48.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 414 MIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999887 44564 55788888889999999999999999999999874
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.19 Score=49.32 Aligned_cols=283 Identities=16% Similarity=0.133 Sum_probs=189.3
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHhhCC---CCCcchHHHHHHH--HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045672 210 RSALIDIYA--KLGELRNAECVFNEMP---TRDLVVWNSIIGG--FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282 (643)
Q Consensus 210 ~~~li~~y~--~~g~~~~A~~~f~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 282 (643)
|.+|-.++. -.|+-..|.+.-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|... ...-...+..+.-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHH
Confidence 444444443 4567777777765543 2354444444443 34469999999999999863 11111223344444
Q ss_pred HhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhc-----CCCChh--hHHHHHHHHHh---cC
Q 045672 283 CTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRM-----IQKDVI--SWSTMISGLAQ---NG 351 (643)
Q Consensus 283 ~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m-----~~~~~~--~~~~li~~~~~---~g 351 (643)
.-+.|+.+.+.++-+.+-. -+.-.-.+.+++...+..|+++.|+++.+.- .++|+. .--.|+.+-+. .-
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 5678999999998888877 4444567788999999999999999999865 344543 22334433222 33
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH--HH
Q 045672 352 YSQEALKLFESMKVSRIKPNYI-TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE--AV 428 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~ 428 (643)
+...|.+.-.+..+ +.||-+ .-..-..++.+.|++.++-.+++.+-+. .|.+..+...+ +.|.|+... ..
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlk 316 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTALDRLK 316 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHH
Confidence 56667766665554 677744 3334556889999999999999998763 56665554433 456665322 21
Q ss_pred H--HHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHcc-CChhHHHHHHHHHHhC
Q 045672 429 K--LIHEMPYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS-QKWDEVAEVRKTMRAR 503 (643)
Q Consensus 429 ~--~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 503 (643)
+ -+.. ++|| ..+..++..+....|++..|..-.+.+....|.. ..|..|+++-... |+-.+++..+.+..+.
T Consensus 317 Ra~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 317 RAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1 1233 3554 4566777788889999999999999999999965 5899999998554 9999998888776643
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0009 Score=50.24 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=50.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
..+...++++.|.+.++++++++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457888999999999999999999999999999999999999999999999888654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.016 Score=56.77 Aligned_cols=107 Identities=18% Similarity=0.150 Sum_probs=62.1
Q ss_pred HHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhCC---CC-----CCHH-HH
Q 045672 378 VLFACSHA-GFVEDGWNHFKSMKKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEMP---YE-----PDAV-TW 443 (643)
Q Consensus 378 ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~-----p~~~-~~ 443 (643)
+...|... |++++|.+.|+...+-+..... ..++..+...+.+.|++++|.++|++.. .. .+.. .+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 34456565 7777777777776653322222 2355667788888889999888888761 11 1111 12
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-----chHHHHHHHH
Q 045672 444 RALLGACKVHRNTDLAICAAKKILNLDPQDP-----GTYILLSNIY 484 (643)
Q Consensus 444 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----~~~~~l~~~~ 484 (643)
...+-.+...||...|...+++..+.+|.-. .....|+.+|
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 2223345667889999999999888877522 2344455555
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.046 Score=51.96 Aligned_cols=169 Identities=12% Similarity=0.058 Sum_probs=96.6
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCh---hh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--c
Q 045672 314 DMYCKCGSLEDAMSVFSRMIQKDV---IS---WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH--A 385 (643)
Q Consensus 314 ~~y~~~g~~~~A~~~~~~m~~~~~---~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~ 385 (643)
..+.+.|++++|.+.|+.+....+ .. .-.++.++.+.+++++|...|++..+.-..-...-+...+.+.+. .
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 334567777777777777743211 11 123455667777788888888777764221112333333333321 0
Q ss_pred ---------------CC---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH--H
Q 045672 386 ---------------GF---VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR--A 445 (643)
Q Consensus 386 ---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~--~ 445 (643)
.+ ..+|...|+.+.+. |=...-..+|...+..+. +...-. .
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~---~~la~~e~~ 180 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLK---DRLAKYELS 180 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHH---HHHHHHHHH
Confidence 01 12333444444432 222222334443333321 111111 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 446 LLGACKVHRNTDLAICAAKKILNLDPQD---PGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 446 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
+..-|.+.|.+.-|..-++.+++.-|+. ..+...+..+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3344788999999999999999987764 4577889999999999999999887664
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.25 Score=48.45 Aligned_cols=248 Identities=17% Similarity=0.154 Sum_probs=116.3
Q ss_pred HHHHHHHHHh--CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH--hcCChhHhHHHHHHHHhhcCCc-hhHHhHHHHH
Q 045672 241 WNSIIGGFAQ--NSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC--TGLALLELGTQVHVHVLKYDHD-LILNNALLDM 315 (643)
Q Consensus 241 ~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~~~~-~~~~~~Li~~ 315 (643)
|.+|-.++.. .|+-..|.++-.+-.+. +..|...+..++.+- .-.|+.+.+++-|+.|...+.. ..-...|.-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 3444444433 34555554444333221 334444455555443 2346666677666666652221 1112233333
Q ss_pred HHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhc---cC
Q 045672 316 YCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESMKVSR-IKPNYI--TIVGVLFACSH---AG 386 (643)
Q Consensus 316 y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~---~g 386 (643)
--+.|..+.|...-++.-.. -...|.+.+...+..|+++.|+++.+.-.... +.++.. .-..|+.+-.. ..
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 34566666666655554221 22355666666667777777777666544332 334421 12223322211 12
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHH-HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHH-HHHH
Q 045672 387 FVEDGWNHFKSMKKFYGIDPGREH-YSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLGACKVHRNTDLA-ICAA 463 (643)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a-~~~~ 463 (643)
+...|...-.+.. .+.|+..- --.-..+|.+.|++.++-.+++.+ +..|....|.....+ +.|+.... .+-.
T Consensus 244 dp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~a--r~gdta~dRlkRa 318 (531)
T COG3898 244 DPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRA--RSGDTALDRLKRA 318 (531)
T ss_pred ChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHh--cCCCcHHHHHHHH
Confidence 3334443333222 34454332 122235566667776666666666 444555555443322 33433222 1223
Q ss_pred HHHHhcCCCCcchHHHHHHHHHccCChhHHH
Q 045672 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVA 494 (643)
Q Consensus 464 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 494 (643)
+++.++.|++......+..+-...|++..|+
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~AR 349 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence 3344456666666666666655555554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0013 Score=51.05 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHH
Q 045672 350 NGYSQEALKLFESMKVSRI-KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEA 427 (643)
Q Consensus 350 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 427 (643)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .+ ..| +......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566666666666655432 11333344455566666666666666655 11 112 122333345556666666666
Q ss_pred HHHHHh
Q 045672 428 VKLIHE 433 (643)
Q Consensus 428 ~~~~~~ 433 (643)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.2 Score=49.04 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHH
Q 045672 41 SLLDDFTRFCYQRDLPRAMKAMHAMQCH----GVRAD-SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNIL 115 (643)
Q Consensus 41 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 115 (643)
.|+..-..|-..+++++|.+.|.+.... +-+.+ ...|......+.+ .++++|.. .+...
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~---------------~~~~A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIE---------------CYEKA 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHH---------------HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHH---------------HHHHH
Confidence 4666666677777777777777665321 10000 0111211121111 13333322 33444
Q ss_pred HHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhC-CChhHHHHHHHHHH
Q 045672 116 LNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA-KMNDKALELLIFML 167 (643)
Q Consensus 116 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~ 167 (643)
+..|...|++..|-+++. .+...|-.. |++++|++.|++..
T Consensus 101 ~~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp HHHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556666777666655543 345566666 77778877777765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.012 Score=51.12 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=55.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CcchH
Q 045672 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM---PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ--DPGTY 477 (643)
Q Consensus 403 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~ 477 (643)
.+.|+...--.|...+.+.|+..||...|++. .+..|......+..+....+++..|...++++.+..|. .|...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34455555555555555666666666555554 23345555555555555555666666666655555543 34455
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHh
Q 045672 478 ILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 478 ~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..++..|...|++++|+.-|+...+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH
Confidence 5555556666666656555555544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.029 Score=50.16 Aligned_cols=81 Identities=10% Similarity=-0.011 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 045672 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414 (643)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 414 (643)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|+..++...+. .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34567777777888888888888888876432221 246777777888888888888888877652 22234445555
Q ss_pred HHHHH
Q 045672 415 IDLLG 419 (643)
Q Consensus 415 i~~~~ 419 (643)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0063 Score=61.86 Aligned_cols=119 Identities=11% Similarity=0.059 Sum_probs=95.8
Q ss_pred CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC----CCcc
Q 045672 68 HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSG--GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE----RNVV 141 (643)
Q Consensus 68 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~ 141 (643)
.+.+.+......+++.+....+++.+..++-..... ....-..+..++++.|.+.|..+.+..+++.=.. ||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344567778888899888888889998888877765 2222345667999999999999999999987665 8999
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 045672 142 SWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD 186 (643)
Q Consensus 142 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 186 (643)
++|.||..+.+.|++..|.++..+|...+...+..|+...+.+|.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 999999999999999999999999988877777777776665553
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0055 Score=52.84 Aligned_cols=90 Identities=12% Similarity=0.069 Sum_probs=77.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCCh
Q 045672 413 CMIDLLGRAGKLQEAVKLIHEMP-YE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490 (643)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 490 (643)
...--+...|++++|..+|.-+- .. -+..-|..|...|...++++.|+..|..+..++++||..+...+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 33444567899999999998761 12 35556888888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 045672 491 DEVAEVRKTMRA 502 (643)
Q Consensus 491 ~~a~~~~~~m~~ 502 (643)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00032 Score=43.30 Aligned_cols=34 Identities=29% Similarity=0.568 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHccCChhHHHH
Q 045672 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAE 495 (643)
Q Consensus 462 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 495 (643)
+++++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999999999999999999863
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.014 Score=57.05 Aligned_cols=125 Identities=15% Similarity=0.190 Sum_probs=74.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHH
Q 045672 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA-CTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYC 317 (643)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~ 317 (643)
+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..||+...+ ++.+...+...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45566666666666666777776666432 2223333333333 2234556667777777776 6667777777777777
Q ss_pred hcCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045672 318 KCGSLEDAMSVFSRMIQK------DVISWSTMISGLAQNGYSQEALKLFESMKV 365 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 365 (643)
+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+..+.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777776432 223677777766677777777777776665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.39 Score=48.22 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=58.7
Q ss_pred HHHHhCCCCC----CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 429 KLIHEMPYEP----DAVTWRALLGA--CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 429 ~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
.++++.++.| +...-|.|.+| ...+|++.++.-...-+.+..| ++.+|..++-......++++|..++..+.
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3455555544 44466777777 5789999999999999999999 78999999999999999999999998653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.74 Score=50.20 Aligned_cols=190 Identities=13% Similarity=0.110 Sum_probs=115.0
Q ss_pred HHHHHHHH--HhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 045672 42 LLDDFTRF--CYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMH 119 (643)
Q Consensus 42 ~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 119 (643)
|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...+..++|..++++..... |+......+..+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHH
Confidence 45555554 5799999999999888765533 88899999999999999999999999998864 5677778888899
Q ss_pred HcCCChh----HHHHHHccCCCCCcchHHHHHHHHHhC-CCh---------hHHHHHHHHHHHCCCCCC----hhhHHHH
Q 045672 120 VKFSLLE----EAQVLFDQMPERNVVSWTTMISAYCDA-KMN---------DKALELLIFMLREGVRPN----MFTYSAV 181 (643)
Q Consensus 120 ~~~g~~~----~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~---------~~A~~~~~~m~~~g~~p~----~~t~~~l 181 (643)
++.+.+. .|.+++...++.--.-|+ +++.+.+. ..+ .-|.+.++.+.+.+-+.. ...|-.+
T Consensus 121 vR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 9887765 466777766654333444 44444433 122 234445555554431111 1223233
Q ss_pred HHHHhchhhHHHHH-HHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 045672 182 LRACDSLIILRQLH-CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT 235 (643)
Q Consensus 182 l~a~~~~~~~~~~~-~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 235 (643)
+....+......+. ......-..-+...-+--++.+...+++.+..++-.++..
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 33222211111221 1222222333444555667777788887776665555443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.1 Score=45.60 Aligned_cols=131 Identities=11% Similarity=0.072 Sum_probs=95.2
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-C-----CCCCHH
Q 045672 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-P-----YEPDAV 441 (643)
Q Consensus 368 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-----~~p~~~ 441 (643)
..|....-..|..+....|+..+|...|++.... -+..|....-.+..+....+++.+|...++.+ . -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 3566666667777788888888888888877762 33446667777777777788888888777766 1 22443
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
-..+...+...|.++.|+..|+.++.--|. +..-...+..+.++|+.+++..-+..+.+
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 334556788899999999999999988774 45666778888999999888876665554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0059 Score=59.61 Aligned_cols=129 Identities=11% Similarity=0.019 Sum_probs=91.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH---hHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCC-CCHH
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKS---MKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-------PYE-PDAV 441 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~-p~~~ 441 (643)
.|..|.+.|.-.|++++|+..++. +.+.+|-.. ....+..+..++.-.|.++.|.+.|+.. +-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455556666667889998877654 223345433 2346777888888899999999888754 211 2344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLD------PQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+.-+|.+.|....+++.|+.++.+-+.+- -....++.+|+++|...|.-+.|..+.++-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56678888888888999998887765432 22456889999999999999999887766553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.021 Score=47.24 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=53.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCChhHhHHHHHHHHhh-cCC---chhHHhHHHHHHH
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQ--STLTSVLRACTGLALLELGTQVHVHVLK-YDH---DLILNNALLDMYC 317 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~---~~~~~~~Li~~y~ 317 (643)
+..++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..+++.... .+. +..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677789999999999998888766542 3444555566666666666666666655 322 2222223334445
Q ss_pred hcCCHHHHHHHHhhc
Q 045672 318 KCGSLEDAMSVFSRM 332 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m 332 (643)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 556666665555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0013 Score=48.60 Aligned_cols=59 Identities=14% Similarity=0.207 Sum_probs=30.4
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 045672 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWR 444 (643)
Q Consensus 384 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 444 (643)
..|++++|.++|+.+... .+-+...+..++.+|.+.|++++|.++++++ ...|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 345566666666665542 2224445555556666666666666666555 2334433333
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.015 Score=52.39 Aligned_cols=107 Identities=21% Similarity=0.192 Sum_probs=80.5
Q ss_pred CCCHhhHHHHHHHHH-----ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHH
Q 045672 71 RADSVTYAELIKCCL-----ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTT 145 (643)
Q Consensus 71 ~p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~ 145 (643)
..|..+|..+++.+. +.|.++-....+..|.+.|++.|..+|+.|++++=+ |.+- -..+|+.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~----------- 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA----------- 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH-----------
Confidence 457788888888876 457888888999999999999999999999998865 3322 1111111
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH
Q 045672 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR 192 (643)
Q Consensus 146 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 192 (643)
+.--| -.+-+-|++++++|...|+.||..|+..++..+++.+..-
T Consensus 111 ~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 111 EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 11111 2345679999999999999999999999999988776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.08 Score=48.91 Aligned_cols=167 Identities=12% Similarity=0.080 Sum_probs=114.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCC--C--------cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 045672 210 RSALIDIYAKLGELRNAECVFNEMPTR--D--------LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279 (643)
Q Consensus 210 ~~~li~~y~~~g~~~~A~~~f~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 279 (643)
+++|...|.-..-+++-...|+.-..+ . ....+.++..+...|.+.-.+.++++.++...+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 344555554444444444444433221 1 234456777777788888899999999887666678888888
Q ss_pred HHHHhcCChhHhHHHHHHHHhh--cCCc-----hhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHh
Q 045672 280 LRACTGLALLELGTQVHVHVLK--YDHD-----LILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQ 349 (643)
Q Consensus 280 l~a~~~~~~~~~a~~i~~~~~~--~~~~-----~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~ 349 (643)
.+...+.|+.+.+...++.+.+ ...+ ..+.......|.-.+++..|...|.+++. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888899999999999998877 2222 23333444556778889999999988754 356666766666777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045672 350 NGYSQEALKLFESMKVSRIKPNYITIVGV 378 (643)
Q Consensus 350 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 378 (643)
.|+..+|++..+.|... .|...+-+++
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 89999999999999884 4555444433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.041 Score=58.45 Aligned_cols=141 Identities=15% Similarity=0.104 Sum_probs=102.6
Q ss_pred CCCChhhHHHHHHHHHh--cC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc--------CCHHHHHHHHHHh
Q 045672 333 IQKDVISWSTMISGLAQ--NG---YSQEALKLFESMKVSRIKPN-YITIVGVLFACSHA--------GFVEDGWNHFKSM 398 (643)
Q Consensus 333 ~~~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~--------g~~~~a~~~~~~~ 398 (643)
...|...|...+.+... .+ ..++|.++|++..+. .|+ ...+..+..++... .++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34578899999988554 32 377999999999984 677 45555554444222 1223344444433
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 045672 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 399 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 475 (643)
........+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 321123345577888877777889999999999988 66788888999999999999999999999999999999873
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.72 Score=48.14 Aligned_cols=405 Identities=13% Similarity=0.054 Sum_probs=232.6
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhh-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVT-YAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILL 116 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 116 (643)
+...|+++|..--+..+.+.+...+..++.. .|...- |.....-=.+.|..+.+..+|+..+.. ++.....|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4556888887666666666677777777754 454443 333333345788999999999999875 566677777666
Q ss_pred HHHH-cCCChhHHHHHHccCCC------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhch-
Q 045672 117 NMHV-KFSLLEEAQVLFDQMPE------RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSL- 188 (643)
Q Consensus 117 ~~~~-~~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~- 188 (643)
.... ..|+.+...+.|+.... ....-|...|.--..++++.....+|++.++.. ...|+.....+.+.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHH
Confidence 6554 45777788888887654 345578889988888999999999999998642 22233332222110
Q ss_pred --hhHHHHHHHHHHhCCCCchhHHHHHHHHHHH------cC-CHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHH
Q 045672 189 --IILRQLHCGIIKVGFESDVFVRSALIDIYAK------LG-ELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN 259 (643)
Q Consensus 189 --~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~------~g-~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 259 (643)
.... + ..+......+-..-.. .+ ..+.-....+....+ .+..+++..
T Consensus 197 ~~~~~~-~---------l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~--------------s~~l~~~~~ 252 (577)
T KOG1258|consen 197 NQNEEK-I---------LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDP--------------SKSLTEEKT 252 (577)
T ss_pred hcCChh-h---------hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCc--------------cchhhHHHH
Confidence 0000 0 0000000000000000 00 011111111111111 112222222
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh---------cCCchhHHhHHHHHHHhcCCHHHHHHHHh
Q 045672 260 LYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---------YDHDLILNNALLDMYCKCGSLEDAMSVFS 330 (643)
Q Consensus 260 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~---------~~~~~~~~~~Li~~y~~~g~~~~A~~~~~ 330 (643)
...+....+ ..+|..-... ...+..++..++ ...+..+|...++.-.+.|+.+...-.|+
T Consensus 253 ~l~~~~~~~----~~~~~~s~~~-------~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~e 321 (577)
T KOG1258|consen 253 ILKRIVSIH----EKVYQKSEEE-------EEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFE 321 (577)
T ss_pred HHHHHHHHH----HHHHHhhHhH-------HHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHH
Confidence 222211110 1111111111 111112222222 23345677888888889999999999998
Q ss_pred hcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 045672 331 RMIQK---DVISWSTMISGLAQNGYSQEALKLFESMKVSRI--KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405 (643)
Q Consensus 331 ~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 405 (643)
+..-+ -..-|--.+.-.-..|+.+-|-.++....+--+ .|....+.+.+ +-..|+++.|..+++.+..+ .
T Consensus 322 rcli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~- 396 (577)
T KOG1258|consen 322 RCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y- 396 (577)
T ss_pred HHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-
Confidence 88654 223455555555555888888877776654332 23333333333 45678999999999999985 3
Q ss_pred CCh-HHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH----HH-HHHcCCHHHHHHHHHHHHhcCCCCcc
Q 045672 406 PGR-EHYSCMIDLLGRAGKLQEAV---KLIHEM-PYEPDAVTWRALL----GA-CKVHRNTDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 406 p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll----~~-~~~~g~~~~a~~~~~~~~~~~p~~~~ 475 (643)
|+. ..-..-+....|.|..+.+. +++... +.+-+..+...+. .. +...++.+.|..++.++.+..|++-.
T Consensus 397 pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~ 476 (577)
T KOG1258|consen 397 PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKV 476 (577)
T ss_pred CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHH
Confidence 543 33444566777889988888 554443 2222332222222 11 45578999999999999999999999
Q ss_pred hHHHHHHHHHccCC
Q 045672 476 TYILLSNIYANSQK 489 (643)
Q Consensus 476 ~~~~l~~~~~~~g~ 489 (643)
.|..+++.....+.
T Consensus 477 ~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 477 LYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHhCCc
Confidence 99999998877663
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.016 Score=46.26 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCCCCChHHH
Q 045672 341 STMISGLAQNGYSQEALKLFESMKVSRI-KPNYITIVGVLFACSHAG--------FVEDGWNHFKSMKKFYGIDPGREHY 411 (643)
Q Consensus 341 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 411 (643)
...|..+...|++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-+.+.+++.|... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3456666667999999999999999999 899999999998876543 244567788888874 888888888
Q ss_pred HHHHHHHHh
Q 045672 412 SCMIDLLGR 420 (643)
Q Consensus 412 ~~li~~~~~ 420 (643)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.011 Score=53.17 Aligned_cols=97 Identities=15% Similarity=0.239 Sum_probs=78.0
Q ss_pred HHHHhhc--CCCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 045672 326 MSVFSRM--IQKDVISWSTMISGLAQ-----NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA------------- 385 (643)
Q Consensus 326 ~~~~~~m--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 385 (643)
...|+.. ..+|..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4456655 56788888888888875 477888888889999999999999999999887543
Q ss_pred ---CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 045672 386 ---GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423 (643)
Q Consensus 386 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 423 (643)
.+-+-|++++++|.. +|+-||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234568899999988 6999999999999999887765
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.023 Score=57.85 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=94.4
Q ss_pred cCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh----cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC----CCChh
Q 045672 267 AGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK----YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI----QKDVI 338 (643)
Q Consensus 267 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~----~~~~~ 338 (643)
.+.+.+...+..+++.+....+++.++.++-.... ...-..+..++|..|.+.|..+.+..+++.=. =+|..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 34566778888888888888888888888777665 22233455689999999999999999887653 36888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 385 (643)
++|.+|+.+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999988888777888887777777655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0094 Score=57.15 Aligned_cols=94 Identities=13% Similarity=0.114 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---cchHHHHH
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDA----VTWRALLGACKVHRNTDLAICAAKKILNLDPQD---PGTYILLS 481 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 481 (643)
.|..-+..+.+.|++++|...|+.+ ...|+. ..+--+...+...|+++.|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 4555555556667777777777666 222332 344556666777888888888888888776664 44555667
Q ss_pred HHHHccCChhHHHHHHHHHHhC
Q 045672 482 NIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 482 ~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
.+|...|++++|.++++.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7787888888888888877653
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.04 Score=45.56 Aligned_cols=91 Identities=12% Similarity=0.124 Sum_probs=66.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHH
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIKPN--YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLG 419 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 419 (643)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567778999999999999998886655 44667788888999999999999998887532111 2223333445677
Q ss_pred hcCCHHHHHHHHHh
Q 045672 420 RAGKLQEAVKLIHE 433 (643)
Q Consensus 420 ~~g~~~~A~~~~~~ 433 (643)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999998877644
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0043 Score=45.83 Aligned_cols=65 Identities=23% Similarity=0.278 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHR-NTDLAICAAKKILNLDP 471 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 471 (643)
+...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777778888888888888888776 3445 4457777777888888 68999999999988887
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.062 Score=46.25 Aligned_cols=93 Identities=9% Similarity=-0.009 Sum_probs=68.3
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 045672 310 NALLDMYCKCGSLEDAMSVFSRMI--QK-DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG 386 (643)
Q Consensus 310 ~~Li~~y~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 386 (643)
-++..-+...|++++|.++|+-+. +| +..-|-.|..++-..|++++|+..|....... +-|+..+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 345555667888888888888763 23 55567778888888888888888888887754 234666777777888888
Q ss_pred CHHHHHHHHHHhHHhcC
Q 045672 387 FVEDGWNHFKSMKKFYG 403 (643)
Q Consensus 387 ~~~~a~~~~~~~~~~~~ 403 (643)
+.+.|++.|+......+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 88888888888776433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0087 Score=60.31 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDA----VTWRALLGACKVHRNTDLAICAAKKILNL 469 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 469 (643)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555555555566666666555553 444442 23555555555566666666666665554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.35 Score=45.98 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=32.3
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCCc---ch---HHHHHHHHHhCCChhHHHHHHHHHHHc
Q 045672 214 IDIYAKLGELRNAECVFNEMPTRDL---VV---WNSIIGGFAQNSDVDEALNLYKRMKRA 267 (643)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~~~~~---~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 267 (643)
...+.+.|++++|.+.|+++....+ .. .-.++.+|.+.+++++|...|++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3344556777777777777654211 11 123455666777777777777777664
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0045 Score=40.89 Aligned_cols=41 Identities=32% Similarity=0.474 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 482 (643)
+|..+..++...|++++|++.++++++.+|+|+..+..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 57788889999999999999999999999999988877764
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.58 E-value=1.4 Score=47.19 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=63.2
Q ss_pred hCCCCCCHhhHHH-----HHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC---ChhHHHHHHccCCC-
Q 045672 67 CHGVRADSVTYAE-----LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS---LLEEAQVLFDQMPE- 137 (643)
Q Consensus 67 ~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~m~~- 137 (643)
+.|++.+..-|.. ++.-+...+.+..|.++-..+-..-... ..++.....-+.+.. +-+-+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4566666555544 4555667788888998887773211111 456666666666653 23333444444444
Q ss_pred -CCcchHHHHHHHHHhCCChhHHHHHHHH
Q 045672 138 -RNVVSWTTMISAYCDAKMNDKALELLIF 165 (643)
Q Consensus 138 -~~~~~~~~li~~~~~~g~~~~A~~~~~~ 165 (643)
...++|..+.+-....|+++-|..+++.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 4667899999888899999999888765
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.3 Score=44.51 Aligned_cols=134 Identities=11% Similarity=0.071 Sum_probs=92.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 045672 337 VISWSTMISGLAQNGYSQEALKLFESMKVSR-IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415 (643)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 415 (643)
...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.=... ++.+..--.-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456667777666666778888888888877 5667777777776554 56777888888765553 222233334566
Q ss_pred HHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 416 DLLGRAGKLQEAVKLIHEM--PYEPD--AVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
.-+.+.++-+.|..+|+.. .+..+ ...|..+|.--...|+...+..+-+++.+.-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6777888888888888754 12223 4578888887788888888888888888877764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.8 Score=45.99 Aligned_cols=200 Identities=13% Similarity=0.121 Sum_probs=101.8
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCC--------CchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcc
Q 045672 71 RADSVTYAELIKCCLARHAVEEAKLVHNHVLSG-GFE--------PETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVV 141 (643)
Q Consensus 71 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~--------~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~ 141 (643)
.|.+..|..+.......-.++.|++.|-+.... |+. .+...-.+=+. +-.|++++|++++-+|..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 678888888888777777788888777544321 111 01111112222 234889999999988877764
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 045672 142 SWTTMISAYCDAKMNDKALELLIFMLREGVRPNM----FTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIY 217 (643)
Q Consensus 142 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y 217 (643)
-|..+.+.|++-.+.++++. -|-..|. ..+..+-.-++....++...+.-...|.. ..++..|
T Consensus 766 ----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------e~~~ecl 832 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------ENQIECL 832 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------HhHHHHH
Confidence 35556666776665555432 1111111 12222222222222222111111111110 1134444
Q ss_pred HHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHH
Q 045672 218 AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296 (643)
Q Consensus 218 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 296 (643)
.+..++++-+.+-..+++ |....-.|...+...|.-++|.+.|-+- + .| ...+.+|..++++.+|.++-
T Consensus 833 y~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 833 YRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred HHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444444 3445556777778888888887766332 1 12 23345566666666665543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.21 Score=46.29 Aligned_cols=134 Identities=12% Similarity=-0.000 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----CCCChHHHHHH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG----IDPGREHYSCM 414 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l 414 (643)
.-+.++..+.-+|.+.-.+.++.+.++...+-++.....+.+.-.+.|+.+.|..+|+...+..+ +.-...+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34556666667788888888888888865555677777788888888999999888887765422 12222222333
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 415 IDLLGRAGKLQEAVKLIHEMPYE--PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
...|.-++++.+|...+++.+.. .|...-|.-.-...-.|+...|++..+.+++..|.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 33455566677777777666322 23333333222233456677777777777777665
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.75 Score=46.07 Aligned_cols=159 Identities=19% Similarity=0.139 Sum_probs=83.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC---Ch----hhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045672 311 ALLDMYCKCGSLEDAMSVFSRMIQK---DV----ISWSTMISGLAQ---NGYSQEALKLFESMKVSRIKPNYITIVGVLF 380 (643)
Q Consensus 311 ~Li~~y~~~g~~~~A~~~~~~m~~~---~~----~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 380 (643)
.|+-.|-...+++.-.++.+.+... ++ ..-....-++-+ .|+.++|++++..+....-.+++.|+..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777777543 11 111223344555 6888888888888666555677777766665
Q ss_pred HHhc---------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH----HHHH---Hh-C---C---CC
Q 045672 381 ACSH---------AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA----VKLI---HE-M---P---YE 437 (643)
Q Consensus 381 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~~-m---~---~~ 437 (643)
.|-. ....++|...|.+. +.+.|+..+--.++..+...|.-.+. .++- .. . + -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5421 12355565555543 33455544333333334444432211 1111 00 0 0 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
.|--.+.+++.++.-.|+++.|.+.++++..+.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 23334455666666666666666666666666553
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.27 E-value=2.3 Score=46.27 Aligned_cols=175 Identities=14% Similarity=0.118 Sum_probs=98.0
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHH----HHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 045672 43 LDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKC----CLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118 (643)
Q Consensus 43 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 118 (643)
..-|.-+.+..-+.-|+.+-+. .+ .|..+...+... +.+.|++++|.+.+-+.+.. ++| ..++.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 3456677778888888877543 22 233344444443 44678888888777555433 222 223444
Q ss_pred HHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHH
Q 045672 119 HVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLH 195 (643)
Q Consensus 119 ~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 195 (643)
|....++.+-...++.+.+ .+...-+.|+.+|.+.++.++-.++.+.-. .|.. .+-+-..+..|.+.+-+++..
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 4444455555555555544 244456678888888888877666655443 2322 112334445554444444333
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCC
Q 045672 196 CGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTR 236 (643)
Q Consensus 196 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 236 (643)
-...+.+. ...+... .+-..+++++|.+.+..++-+
T Consensus 484 ~LA~k~~~--he~vl~i---lle~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 484 LLATKFKK--HEWVLDI---LLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHHhcc--CHHHHHH---HHHHhcCHHHHHHHHhcCCHH
Confidence 33333333 2222222 344568899999999999854
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.019 Score=42.89 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=50.0
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHH
Q 045672 416 DLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478 (643)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 478 (643)
..|.+.+++++|.+.++.+ ...| +...|......+...|++++|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5678889999999988887 4445 4456777777889999999999999999999998765443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.97 Score=47.81 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=29.9
Q ss_pred cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045672 302 YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363 (643)
Q Consensus 302 ~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 363 (643)
++.+....-.+.+|+.+.|.-++|.+.|-+-..|- +.+..|...+++.+|.++-++.
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 44445555556666666666666665555443332 2234445555555555555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.44 Score=39.30 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=82.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 427 (643)
.-.|..++..++..+...+ .+..-++.++.-....-+-+-..+.++.+-+-|.+.| +|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~--------------C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK--------------CGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG---------------S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh--------------hcchHHH
Confidence 4467777778888777653 2444555555444444444555556666554333222 3333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 045672 428 VKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506 (643)
Q Consensus 428 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 506 (643)
..-+-.++ .+.......++.....|.-+.-.+++..+..-+..+|....-++++|.+.|+..++.+++.+.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333332 233344556677888899998889999888655557889999999999999999999999999999975
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0093 Score=45.32 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC---CcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNL----DPQ---DPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+++.+...+...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5666667777788888888888777753 222 245778888999999999999998887653
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.13 Score=49.29 Aligned_cols=100 Identities=14% Similarity=0.078 Sum_probs=59.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 045672 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM----PYEP-DAVTWRALLG 448 (643)
Q Consensus 375 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~ 448 (643)
|...+....+.|++++|...|+.+.+.+.-.+ ....+..+...|...|++++|...|+.+ |..| ....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445666666666666665421111 0234555666677777777777766665 2111 1234444555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 449 ACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
.+...|+.+.|...++++++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 66778888888888888888888764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.037 Score=54.29 Aligned_cols=52 Identities=23% Similarity=0.288 Sum_probs=42.7
Q ss_pred HHHHhCCCcchHHHHHHHHHhCCCCCCH----hhHHHHHHHHHccCCHHHHHHHHHH
Q 045672 47 TRFCYQRDLPRAMKAMHAMQCHGVRADS----VTYAELIKCCLARHAVEEAKLVHNH 99 (643)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~ 99 (643)
..+++.|+++..+.+|+..++.|. .|. .+|..|.++|.-.+++++|.+.|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 367999999999999999999883 343 4577778888889999999998754
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.58 Score=43.23 Aligned_cols=161 Identities=15% Similarity=0.142 Sum_probs=85.2
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhc-
Q 045672 314 DMYCKCGSLEDAMSVFSRMIQK------DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN--YITIVGVLFACSH- 384 (643)
Q Consensus 314 ~~y~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~- 384 (643)
..+...|++++|.+.|+.+... -....-.++.++-+.|++++|...++++++. -|+ ..-+...+.+.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence 3345667777777777776431 1123445566677777777777777776653 232 1222222222211
Q ss_pred ------------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH--HHHHHH
Q 045672 385 ------------AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWR--ALLGAC 450 (643)
Q Consensus 385 ------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~--~ll~~~ 450 (643)
.+...+|...|+.+.+ -|=.+....+|...+..+. +...-. .+..-|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELR---NRLAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 1112233333333333 3333334444444433331 111111 133457
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHccCChhHHHH
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDP---GTYILLSNIYANSQKWDEVAE 495 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 495 (643)
.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.+..
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 889999999999999999888754 356788899999998885443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.069 Score=52.77 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 441 VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 441 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
..++.+...+.+.+++..|++...++++++|+|.-++..-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 356667777889999999999999999999999999999999999999999999999999863
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.42 Score=45.58 Aligned_cols=104 Identities=15% Similarity=0.074 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCCCHH-HH
Q 045672 369 KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG---KLQEAVKLIHEM-PYEPDAV-TW 443 (643)
Q Consensus 369 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p~~~-~~ 443 (643)
+-|...|..|..+|...|+.+.|..-|....+- -.++...+..+...+..+. ...++.++|+++ ...|+.. +.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 345677888888888888888888888877763 3345556666666655433 355677888877 4455444 45
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 444 RALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 444 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
.-|...+...|++.+|...++.|++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 5555668899999999999999999887764
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.1 Score=43.68 Aligned_cols=50 Identities=10% Similarity=0.220 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 368 IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 368 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
..|+..++.+++.+++..|++..|.++.+...+.|+++-+...|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 56777777777777777777777777777777777766666666666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.042 Score=47.73 Aligned_cols=68 Identities=26% Similarity=0.304 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh-----CCCCcCC
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA-----RGITKEP 509 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~ 509 (643)
....++..+...|+++.|...+++++..+|-+...|..++.+|...|+..+|.++++++.+ .|+.|.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 4556677788999999999999999999999999999999999999999999999988853 3665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.79 E-value=2.5 Score=42.68 Aligned_cols=385 Identities=14% Similarity=0.103 Sum_probs=179.2
Q ss_pred HHHHHHHH--HhCCCcchHHHHHHHHHhC--CCCC------------CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 045672 42 LLDDFTRF--CYQRDLPRAMKAMHAMQCH--GVRA------------DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGF 105 (643)
Q Consensus 42 ~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 105 (643)
|-.+..++ .+.+.+..|++.|...... +..| |-..=+..+.++...|.+.+|+.+++.++..=+
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 44444433 3678899999888777653 3222 112224456777889999999999888876544
Q ss_pred ----CCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 045672 106 ----EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAV 181 (643)
Q Consensus 106 ----~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 181 (643)
..+..+|+.++-++++.=-++ +-+.+...=...|--||..|.+.=+. ++.-.-..+.|....+..+
T Consensus 160 krE~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~~------~d~~~Y~k~~peeeL~s~i 229 (549)
T PF07079_consen 160 KRECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTI 229 (549)
T ss_pred hhhhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHH
Confidence 378889998888877642111 11122221122355556555542111 1110001123333333333
Q ss_pred HHHHhchhhHH-----HHHHHHHHhCCCCchh-HHHHHHHHHHHcCCHHHHHHHHhhCC--------CCCcchHHHHHHH
Q 045672 182 LRACDSLIILR-----QLHCGIIKVGFESDVF-VRSALIDIYAKLGELRNAECVFNEMP--------TRDLVVWNSIIGG 247 (643)
Q Consensus 182 l~a~~~~~~~~-----~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~ 247 (643)
+....-...-. ++...-...-+.|+-. +...|+.-+.+ +.+++..+-+.+. +.=+.++..++..
T Consensus 230 mqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~ 307 (549)
T PF07079_consen 230 MQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSF 307 (549)
T ss_pred HHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 32221111111 3333333344445432 23334444433 3344333333222 2234578888888
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHh-cCCh---hHhHHHHHHHHhhcCCch-hHHhHHH--
Q 045672 248 FAQNSDVDEALNLYKRMKRAGFAADQSTLTS-------VLRACT-GLAL---LELGTQVHVHVLKYDHDL-ILNNALL-- 313 (643)
Q Consensus 248 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-------ll~a~~-~~~~---~~~a~~i~~~~~~~~~~~-~~~~~Li-- 313 (643)
.++.++..+|.+.+.-+.- +.|+...-.- +-+..+ .... +..-..++..+...+.|. ....-|+
T Consensus 308 ~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~ 385 (549)
T PF07079_consen 308 KVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFG 385 (549)
T ss_pred HHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 8899999888888776654 3343321111 111111 1111 111112222222211111 1111121
Q ss_pred -HHHHhcCC-HHHHHHHHhhcC---CCChhhHHHHHH----HHHh---cCCHHHHHHHHHHHHHCCCCCCHHH----HHH
Q 045672 314 -DMYCKCGS-LEDAMSVFSRMI---QKDVISWSTMIS----GLAQ---NGYSQEALKLFESMKVSRIKPNYIT----IVG 377 (643)
Q Consensus 314 -~~y~~~g~-~~~A~~~~~~m~---~~~~~~~~~li~----~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ 377 (643)
.-+-+.|. -++|.++++.+. ..|...-|.+.. .|.+ ......-+.+-+-..+.|++|-.+. -+.
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 22333444 556666666553 234433333221 2221 1122233333333445565553222 222
Q ss_pred HHH--HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 045672 378 VLF--ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA 445 (643)
Q Consensus 378 ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 445 (643)
|.. .+...|++.++.-+-.-+. .+.|++.+|..+.-.+....++++|.+++..+| |+..+|++
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 222 2234566666654443333 356677777766666666677777777777764 45555544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.019 Score=43.58 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM-------P-YEPD-AVTWRALLGACKVHRNTDLAICAAKKILNL 469 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 469 (643)
+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|+..+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555556666666666666555544 1 1122 335666667777777777777777776653
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.61 E-value=2.9 Score=42.13 Aligned_cols=128 Identities=13% Similarity=0.057 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHH
Q 045672 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYG-IDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTW-RALLGA 449 (643)
Q Consensus 373 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~ll~~ 449 (643)
..|...+++..+..-++.|+.+|-++.+. + +.+++..+++++.-++ .|+..-|..+|+-- ..-||...| +-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34556677777778889999999999885 5 6788889999998765 67888899988754 333555543 455666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 450 CKVHRNTDLAICAAKKILNLDPQ--DPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+...++-+.|..+|+..++.-.. -...|..++.--+.-|+...|..+=+.|.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 77888999999999976653221 235788888888888888887777766654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.57 E-value=1.5 Score=40.45 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCcchH
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEMP-------YEPDA-VTWRALLGACKVHRNTDLAICAAKKILNL----DPQDPGTY 477 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~ 477 (643)
.|......|.|..++++|-..|.+-. --|+. ..+-+.|-.+.-..++..|++.++.--++ +|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34444556777777777766655441 11222 12334444455566888888888876553 36677777
Q ss_pred HHHHHHHHccCChhHHHHHH
Q 045672 478 ILLSNIYANSQKWDEVAEVR 497 (643)
Q Consensus 478 ~~l~~~~~~~g~~~~a~~~~ 497 (643)
..|+.+| ..|+.+++..+.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 7777777 457777766654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.17 Score=41.43 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=71.9
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC---cchHHHHHHHHHccCC
Q 045672 416 DLLGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLD-PQD---PGTYILLSNIYANSQK 489 (643)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~ 489 (643)
-+++..|+++.|++.|.+. ..- .....||.-..+++-.|+.++|+.-+++++++. |.. -.+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567889999999998876 222 356788999999999999999999999999875 332 2367778889999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 045672 490 WDEVAEVRKTMRARGI 505 (643)
Q Consensus 490 ~~~a~~~~~~m~~~g~ 505 (643)
-+.|+.=|+...+-|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999998887663
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.62 Score=48.74 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=33.6
Q ss_pred HHHHHHHHHccCCHHHHHHH--HHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC
Q 045672 77 YAELIKCCLARHAVEEAKLV--HNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE 137 (643)
Q Consensus 77 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~ 137 (643)
++..=++|.+.++..--+-+ ++++.+.|-.|+... +...++-.|.+.+|.++|.+--.
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~ 660 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGH 660 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCc
Confidence 44455566665554443333 345666666566543 34455566778888888876654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.28 E-value=3.6 Score=41.11 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=30.7
Q ss_pred HHHHcCCHHHHHHHHhhCCCCCcc-hHHHHHHH--HHhCCChhHHHHHHHHHHHcCCCCCHH
Q 045672 216 IYAKLGELRNAECVFNEMPTRDLV-VWNSIIGG--FAQNSDVDEALNLYKRMKRAGFAADQS 274 (643)
Q Consensus 216 ~y~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~ 274 (643)
.+.-.|++++|...--.+.+-|.. .+...+.+ +--+++.+.|...|++-+.. .|+..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~ 237 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQ 237 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--Chhhh
Confidence 345567777776665554443322 22223332 33456777888877776653 45443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.43 Score=44.09 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=33.0
Q ss_pred HHHHHHcCCHHHHHHHHhhCCC--CC----cchHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 045672 214 IDIYAKLGELRNAECVFNEMPT--RD----LVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267 (643)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 267 (643)
...+...|++++|.+.|+.+.. |+ ..+.-.++.++-+.|++++|...|++..+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445567777777777777653 21 123445666777777777777777777664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.8 Score=43.45 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=62.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCC---Cc----chHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045672 212 ALIDIYAKLGELRNAECVFNEMPTR---DL----VVWNSIIGGFAQ---NSDVDEALNLYKRMKRAGFAADQSTLTSVLR 281 (643)
Q Consensus 212 ~li~~y~~~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 281 (643)
.|+-.|-...+++.-.++++.+... ++ ..--...-++-+ .|+.++|++++..+....-.+++.|+..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4556688889999999999988763 11 111233445556 7899999999999776666788888877666
Q ss_pred HHh---------cCChhHhHHHHHHHHhhcCCchhH
Q 045672 282 ACT---------GLALLELGTQVHVHVLKYDHDLIL 308 (643)
Q Consensus 282 a~~---------~~~~~~~a~~i~~~~~~~~~~~~~ 308 (643)
.|- ....++.|...+.+.-+..++...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~ 261 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS 261 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence 542 122344555555544444444433
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.35 Score=47.98 Aligned_cols=138 Identities=15% Similarity=0.045 Sum_probs=96.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 045672 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423 (643)
Q Consensus 344 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 423 (643)
.+.|.+.|++..|...|++.+.. |. +...-+.++..... . .-..++..+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhhh
Confidence 45677778888888877776541 11 11111112221111 1 123467778888999999
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHH-HHHHHHH
Q 045672 424 LQEAVKLIHEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV-AEVRKTM 500 (643)
Q Consensus 424 ~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 500 (643)
+.+|++.-++. ... +|+-..---..+|...|+++.|+..|+++++++|+|-.+-..|+.+-.+....++. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888776 333 45556666678899999999999999999999999988888888877776666554 8889988
Q ss_pred HhC
Q 045672 501 RAR 503 (643)
Q Consensus 501 ~~~ 503 (643)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 754
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=2.6 Score=39.05 Aligned_cols=196 Identities=19% Similarity=0.168 Sum_probs=130.7
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMI-----QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 380 (643)
..........+...+.+..+...+.... ......+......+...++..++.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455666667777777777777766653 22344566666677777778888888888776433331 11222222
Q ss_pred -HHhccCCHHHHHHHHHHhHHhcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcC
Q 045672 381 -ACSHAGFVEDGWNHFKSMKKFYGI--DPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD--AVTWRALLGACKVHR 454 (643)
Q Consensus 381 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g 454 (643)
.+...|+++.+...+..... ... ......+......+...++.++|...+.+. ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 67788888888888888744 111 122334444444566778888888888776 33333 566777777788888
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 455 NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 455 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+.+.|...+.......|.....+..+...+...|.++++...+......
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8889999999888888875556677777777777788888888777653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.23 Score=41.49 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHh--------------HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 045672 372 YITIVGVLFACSHAGFVEDGWNHFKSM--------------KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM--- 434 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g~~~~a~~~~~~~--------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 434 (643)
+.++..++.++++.|+++....+.+.. .......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 445555666666666666555555432 111133355555555555555555555555555443
Q ss_pred -CCCCCHHHHHHHHHH
Q 045672 435 -PYEPDAVTWRALLGA 449 (643)
Q Consensus 435 -~~~p~~~~~~~ll~~ 449 (643)
+++-+..+|..|+.-
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 333334455555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.15 E-value=1 Score=42.99 Aligned_cols=121 Identities=13% Similarity=0.078 Sum_probs=85.8
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCCHH
Q 045672 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRA---LLGACKVHRNTD 457 (643)
Q Consensus 381 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~~~~~~g~~~ 457 (643)
.....|++.++...|+..... .+-+...-..|+..|...|+.++|..++..+|.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456778888888888888763 333456677788899999999999999999875543333333 223333333333
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 458 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+... +++-...+|+|...-..++..|...|+.++|.+.+=.+.++.
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3332 333446689999999999999999999999998887776653
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.06 E-value=3.9 Score=46.43 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=89.0
Q ss_pred CCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHh
Q 045672 221 GELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVL 300 (643)
Q Consensus 221 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 300 (643)
+++++|..-+.++. ...|.-.+..--++|.+.+|+.++ +|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 44555555554443 223333334344455555555553 56666666655555421 00
Q ss_pred hcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHH
Q 045672 301 KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYIT--IVGV 378 (643)
Q Consensus 301 ~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~l 378 (643)
....++-..-+|.++|+.++|.+. |...|++.+|+.+-.+|.. .-|... -..|
T Consensus 951 ----~~~~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L 1005 (1265)
T KOG1920|consen 951 ----EELMSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILAEEL 1005 (1265)
T ss_pred ----HhccccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHHHHH
Confidence 011123344567888888888654 4557788888888777642 122222 2456
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 379 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
..-+...+..-+|-++..+...+ ..-.+..|+++..+++|..+....
T Consensus 1006 ~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1006 VSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 66677777777777666655432 233456677778888888776655
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.17 Score=51.29 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR----EHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
...++.+..+|.+.|++++|...|+...+ +.|+. ..|..+..+|...|++++|++.+++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555566666666666666666666554 23432 23555566666666666666665554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.74 Score=39.01 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=51.9
Q ss_pred HHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHccCC
Q 045672 418 LGRAGKLQEAVKLIHEM----PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG---TYILLSNIYANSQK 489 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~ 489 (643)
..+.|++++|.+.|+.+ |..| ....-..++.++.+.+++++|...+++.+++.|.++. ++...+-++.....
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 34667777777777766 2222 2234455677788888888888888888888877543 23333333333333
Q ss_pred ---------------hhHHHHHHHHHHh
Q 045672 490 ---------------WDEVAEVRKTMRA 502 (643)
Q Consensus 490 ---------------~~~a~~~~~~m~~ 502 (643)
..+|..-|+.+.+
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 4566666666654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.33 Score=42.11 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChHH
Q 045672 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK----FYGIDPGREH 410 (643)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 410 (643)
...++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.++|+.+.+ .+|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666666666666666666542 33456666666677777777666666665532 3466666544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.21 Score=46.92 Aligned_cols=91 Identities=20% Similarity=0.323 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CcchHHH
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM-------PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ---DPGTYIL 479 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~ 479 (643)
.|+.-++.| +.|++.+|...|... ...||...| |..++...|+++.|...|..+.+-.|+ -|.++.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 344444433 455566666665544 123444444 556666777777777777777765544 3456777
Q ss_pred HHHHHHccCChhHHHHHHHHHHhC
Q 045672 480 LSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 480 l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
|+.+..+.|+.++|..+++++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777777777777777777654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.29 Score=45.83 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=85.7
Q ss_pred HHHHHHhhcC--CCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------
Q 045672 324 DAMSVFSRMI--QKDVISWSTMISGLAQN-----GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG---------- 386 (643)
Q Consensus 324 ~A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 386 (643)
-.++.|.... ++|-.+|-+++..|..+ +..+-....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455676665 67888999999888754 567777788899999999999999999998876543
Q ss_pred ------CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH-HHHHHHHhC
Q 045672 387 ------FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQ-EAVKLIHEM 434 (643)
Q Consensus 387 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m 434 (643)
.-+-++.+++.|.. +|+.||.++-..|+.+++|.+..- +..++.--|
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 22447889999988 699999999999999999998743 333444333
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.66 E-value=4.7 Score=45.79 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=24.5
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHH
Q 045672 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVT--WRALLGACKVHRNTDLAICAAKK 465 (643)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~ 465 (643)
+.+|..+|++.+|+.+-.++....|... -..|.+-+...++.-+|-++..+
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence 3445555566666555555533223322 13444555555555555444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.60 E-value=1.3 Score=43.18 Aligned_cols=161 Identities=7% Similarity=0.068 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC---C--ChH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKV-SRIKPN---YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID---P--GRE 409 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~---p--~~~ 409 (643)
+|-.+..++-+.-++.+++.+-..-.. .|..|. -....++..+....+.++++++.|+...+- ... | ...
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~-A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRY-AHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH-hhccCCceeeee
Confidence 344444444444445555544433221 122221 112223445555556677777777776542 111 1 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHhcC------C
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM-------PYEPDAVTWRA-----LLGACKVHRNTDLAICAAKKILNLD------P 471 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~------p 471 (643)
+|-.|...|++..++++|.-+..+. +.+.=..-|.. |.-+++..|....|.+.-+++.++. |
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 6777777888888777766544333 32211112222 3355777788877877777776532 2
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHH
Q 045672 472 QDPGTYILLSNIYANSQKWDEVAEVRKTM 500 (643)
Q Consensus 472 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 500 (643)
-.......++++|...|+.|.|..-++..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 23344557788888888887777666554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.43 E-value=1 Score=43.37 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=59.3
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHH--HHHHhccCCHHHH
Q 045672 319 CGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYI--TIVGV--LFACSHAGFVEDG 391 (643)
Q Consensus 319 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~l--l~a~~~~g~~~~a 391 (643)
.|+..+|...++++.+ .|..+|+-.=.++..+|+.+.-...+++.... ..||.. +|..- .-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555533 25556666666666666666666666665542 133332 22211 2233456666666
Q ss_pred HHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 392 WNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 392 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
.+.-++..+ +.| |.-.-.+....+.-.|+..++.+++.+-
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 665555443 222 3334445555666666666666666554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.3 Score=45.74 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=25.2
Q ss_pred CCCcchHHHHHHHHHhC-----CCcchHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 045672 36 TRNSSSLLDDFTRFCYQ-----RDLPRAMKAMHAMQCHGVRADSVTYAELIKCC 84 (643)
Q Consensus 36 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 84 (643)
++|-.+|-+++..+... +..+=--..++.|.+.|+.-|..+|+.||+.+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~Llnvf 117 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVF 117 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhC
Confidence 44555555555555432 22333334445555566666666666666554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.15 E-value=10 Score=41.19 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=17.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH
Q 045672 243 SIIGGFAQNSDVDEALNLYKRMK 265 (643)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~ 265 (643)
.|+..|...+++..|+.++-..+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 47777888888888888776554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.99 Score=46.94 Aligned_cols=134 Identities=18% Similarity=0.242 Sum_probs=88.3
Q ss_pred HHHHhcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 045672 345 SGLAQNGYSQEALKLFES-MKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423 (643)
Q Consensus 345 ~~~~~~g~~~~A~~l~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 423 (643)
....-+|+++++.++.+. -.-..+ | ..-...++.-+.+.|..+.|+++-..-..+ .++..+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCC
Confidence 444567888887776651 111112 2 334667777778888888887765443322 455678899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 424 LQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 424 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
++.|.++.++. ++...|..|.......|+++.|++++++. .-+..|+-.|.-.|+.+.-.++-+....+
T Consensus 334 L~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99998887765 47789999999999999999999999875 45777888888889888877777777666
Q ss_pred C
Q 045672 504 G 504 (643)
Q Consensus 504 g 504 (643)
|
T Consensus 403 ~ 403 (443)
T PF04053_consen 403 G 403 (443)
T ss_dssp T
T ss_pred c
Confidence 5
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.09 E-value=1.5 Score=48.00 Aligned_cols=69 Identities=9% Similarity=0.075 Sum_probs=43.7
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC-------HHHHHHHHHHHHHcCCCCchh
Q 045672 40 SSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHA-------VEEAKLVHNHVLSGGFEPETF 110 (643)
Q Consensus 40 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~ 110 (643)
-.| ++|--+.|.|++++|.++...... ........|...+..+....+ -+....-++..++.....|++
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 345 688889999999999999966554 335566778888888876432 234555566665544433554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.95 E-value=5.4 Score=38.20 Aligned_cols=173 Identities=16% Similarity=0.094 Sum_probs=106.0
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 045672 325 AMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI 404 (643)
Q Consensus 325 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 404 (643)
.++.+++...+....--.........|++.+|..+|....... .-+......+..++...|+++.|..++..+..+ .
T Consensus 122 lr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~ 198 (304)
T COG3118 122 LRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--A 198 (304)
T ss_pred HHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--c
Confidence 3344444443322222223445677888889999888887653 222445556778888899999999888876542 1
Q ss_pred CCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCcchHHHH
Q 045672 405 DPG-REHYSCMIDLLGRAGKLQEAVKLIHEMPYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLD--PQDPGTYILL 480 (643)
Q Consensus 405 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l 480 (643)
.-+ ......-+..+.+.....+...+-.+..-.| |...-..+...+...|+.+.|...+-.++..+ -.|...-..|
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 111 1112234555666655555555555554455 55566667777888899999888877777654 4466677777
Q ss_pred HHHHHccCChhH-HHHHHHHH
Q 045672 481 SNIYANSQKWDE-VAEVRKTM 500 (643)
Q Consensus 481 ~~~~~~~g~~~~-a~~~~~~m 500 (643)
+.++.-.|.-+. +.+++++|
T Consensus 279 le~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 279 LELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHhcCCCCHHHHHHHHHH
Confidence 777777774443 34444444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.88 E-value=3.5 Score=43.56 Aligned_cols=160 Identities=14% Similarity=0.052 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----ccCCHHHHHHHHHHhHHhcCCCCChH
Q 045672 340 WSTMISGLAQNGYSQEALKLFESMKVSR-IKPNY-----ITIVGVLFACS----HAGFVEDGWNHFKSMKKFYGIDPGRE 409 (643)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~ 409 (643)
...+++...-.|+-+.+++++.+..+.+ +.-.. .+|..++..+. .....+.+.+++..+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3344555555667777777666654422 21111 12222232222 245788899999998874 45554
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHH-HH
Q 045672 410 HYSC-MIDLLGRAGKLQEAVKLIHEMPY-E-----PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL-LS 481 (643)
Q Consensus 410 ~~~~-li~~~~~~g~~~~A~~~~~~m~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~ 481 (643)
.|.. -...+...|++++|.+.|++.-. + -....+--+...+....++++|...+.++.+...-....|.- .+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 4433 34566778999999999987521 1 122334445566778899999999999999876555445544 45
Q ss_pred HHHHccCCh-------hHHHHHHHHHHh
Q 045672 482 NIYANSQKW-------DEVAEVRKTMRA 502 (643)
Q Consensus 482 ~~~~~~g~~-------~~a~~~~~~m~~ 502 (643)
-+|...|+. ++|.+++++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 555778888 888888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.78 E-value=2.1 Score=36.30 Aligned_cols=114 Identities=12% Similarity=0.160 Sum_probs=60.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 045672 344 ISGLAQNGYSQEALKLFESMKVSRI--KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421 (643)
Q Consensus 344 i~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 421 (643)
.....+.|++++|.+.|+.+...=. +-....-..++.++.+.+++++|...+++.++.+.-.|+ ..|.....+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 3444566777777777777665421 111344555666777777777777777776664333333 2333333333322
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 422 GKLQEAVKLIHEM-PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 422 g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
...+.. +..+ ..+ +..+....|...|+++++.-|++.
T Consensus 96 ~~~~~~---~~~~~~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGS---LQSFFRSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhH---Hhhhcccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 221111 1111 111 112335678888999999889764
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.13 Score=31.39 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 441 VTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 441 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35677777788888888888888888888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=3.3 Score=42.43 Aligned_cols=143 Identities=10% Similarity=0.030 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhc---------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 045672 352 YSQEALKLFESMKV-SRIKPNY-ITIVGVLFACSH---------AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR 420 (643)
Q Consensus 352 ~~~~A~~l~~~m~~-~g~~p~~-~t~~~ll~a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 420 (643)
..+.|+.+|.+... +.+.|+. ..|..+..++.. .....+|.++-+...+ --+-|......+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 35578888888872 2356663 333333322211 2234455555555554 223356666666666677
Q ss_pred cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH--HHHHHHHHccCChhHHHHH
Q 045672 421 AGKLQEAVKLIHEM-PYEPDAV-TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY--ILLSNIYANSQKWDEVAEV 496 (643)
Q Consensus 421 ~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~a~~~ 496 (643)
.|+++.|...|++. ...||.. +|......+.-.|+.++|.+.+++.++++|....+- -..++.|...+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 77788888888877 4556543 455444556667888888888888888888644332 23334555544 4555554
Q ss_pred H
Q 045672 497 R 497 (643)
Q Consensus 497 ~ 497 (643)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 4
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.61 E-value=6.4 Score=36.95 Aligned_cols=157 Identities=19% Similarity=0.207 Sum_probs=86.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc-
Q 045672 345 SGLAQNGYSQEALKLFESMKVSRI--KPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA- 421 (643)
Q Consensus 345 ~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~- 421 (643)
..-.+.|++++|.+.|+.+...-. +-...+...++.++.+.+++++|....++..+.++-.|++. |...+.++..-
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~ 120 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFF 120 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhc
Confidence 334455666666666666554321 11134444555555566666666666666655555445432 22222222211
Q ss_pred ------CCHHHHHHH-------HHhCC---CCCCHHH----------H-H-HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 422 ------GKLQEAVKL-------IHEMP---YEPDAVT----------W-R-ALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 422 ------g~~~~A~~~-------~~~m~---~~p~~~~----------~-~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
.+...+.+- +++.| ..||... . . .+..-|.+.|.+..|..-++++++.-|+.
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 111122222 22222 1233221 1 1 22345788999999999999999876654
Q ss_pred c---chHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 474 P---GTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 474 ~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+ ..+..+..+|...|..++|.+.-+-+..
T Consensus 201 ~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 201 SAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred cchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3 4566788899999999999998776653
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.22 Score=30.25 Aligned_cols=32 Identities=34% Similarity=0.347 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
.|..+...+...|++++|+..++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566667777888888888888888877764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.43 E-value=5.1 Score=42.34 Aligned_cols=78 Identities=19% Similarity=0.165 Sum_probs=35.6
Q ss_pred hhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC-------ChhhHHHHHHHHHhcCCHHHHHHH
Q 045672 288 LLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK-------DVISWSTMISGLAQNGYSQEALKL 359 (643)
Q Consensus 288 ~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~l 359 (643)
..+.+.+++..+.+ +|......---...+...|++++|.+.|++.... ....+--+.-.+.-.+++++|.+.
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 34445555555554 2222222223334455566666666666644321 111222233334445556666666
Q ss_pred HHHHHH
Q 045672 360 FESMKV 365 (643)
Q Consensus 360 ~~~m~~ 365 (643)
|.++.+
T Consensus 328 f~~L~~ 333 (468)
T PF10300_consen 328 FLRLLK 333 (468)
T ss_pred HHHHHh
Confidence 665554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.38 E-value=4.6 Score=34.54 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 045672 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH 384 (643)
Q Consensus 341 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 384 (643)
..++..+.+.+.......+++.+...+ ..+....+.++..|++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 344445555555555555555555443 2334444455555543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.32 E-value=14 Score=40.02 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045672 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGAC 450 (643)
Q Consensus 371 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 450 (643)
...|.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+.+. .+.-|.-...+|
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c 754 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEAC 754 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHH
Confidence 33445555556666777777766554432 2666667666777777777777666666552 234455566777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHH
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
.+.|+.++|.+++-+.-. +.-...+|.+.|++.+|.++--
T Consensus 755 ~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 777777777777665422 1155667777777777776543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.23 E-value=3.5 Score=43.00 Aligned_cols=104 Identities=19% Similarity=0.221 Sum_probs=66.8
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 045672 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393 (643)
Q Consensus 314 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 393 (643)
+...++|+++.|.++-++.. +...|..|.....++|+++-|.+.|++... |..|+--|.-.|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 44557888888888877665 556888899888899999888888887543 4455556666777766666
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 045672 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435 (643)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (643)
+.+..... | -++....++.-.|+.++..+++.+.+
T Consensus 395 l~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 395 LAKIAEER-G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 65555442 2 13334444455677777766666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.2 Score=42.11 Aligned_cols=92 Identities=21% Similarity=0.170 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 045672 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPN----YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG-REHYSCM 414 (643)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 414 (643)
|+.-+.. .+.|++.+|...|...++.. |+ ...+-.|..++...|+++.|..+|..+.+.++-.|. ++.+--|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 5554443 34566777777777777642 22 223445677777777777777777777776555553 3556666
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 045672 415 IDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m 434 (643)
.....+.|+.++|...+++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 66666666666666666655
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.13 E-value=7 Score=35.99 Aligned_cols=161 Identities=20% Similarity=0.183 Sum_probs=107.6
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCCC--C-hhhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHH
Q 045672 308 LNNALLDMYCKCGSLEDAMSVFSRMIQK--D-VISWSTMIS-GLAQNGYSQEALKLFESMKVSRIKP----NYITIVGVL 379 (643)
Q Consensus 308 ~~~~Li~~y~~~g~~~~A~~~~~~m~~~--~-~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll 379 (643)
.+..+...+...++...+...+...... + ......... .+...|+.++|...|.+... ..| ....+....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~ 174 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALG 174 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhh
Confidence 3344455555566666676666665432 1 122222333 67888889999988888855 233 233444444
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCH
Q 045672 380 FACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNT 456 (643)
Q Consensus 380 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~ 456 (643)
..+...++.+.+...+....+. ... ....+..+...+...+++++|...+... ...|+ ...+..+...+...+..
T Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (291)
T COG0457 175 ALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRY 252 (291)
T ss_pred hHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCH
Confidence 4466778899999888888763 333 4677788888888888999999888777 33444 44555555555577789
Q ss_pred HHHHHHHHHHHhcCCC
Q 045672 457 DLAICAAKKILNLDPQ 472 (643)
Q Consensus 457 ~~a~~~~~~~~~~~p~ 472 (643)
+.+...+.+.....|.
T Consensus 253 ~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 253 EEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 9999999999998886
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.96 E-value=9.7 Score=37.14 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=30.1
Q ss_pred HHcCCHHHHHHHHhhCCC------CC------cchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 045672 218 AKLGELRNAECVFNEMPT------RD------LVVWNSIIGGFAQNSDVDEALNLYKRMKR 266 (643)
Q Consensus 218 ~~~g~~~~A~~~f~~~~~------~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (643)
.+.|+++.|...+.+... |+ ...||.-...+.+..++++|..++++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 456888888888877654 21 13455444444444388888777776543
|
It is also involved in sporulation []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.93 E-value=5.4 Score=34.10 Aligned_cols=114 Identities=12% Similarity=0.114 Sum_probs=73.0
Q ss_pred cchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 045672 39 SSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118 (643)
Q Consensus 39 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 118 (643)
...-..+|..+...+.......+++.+...+ ..+...++.++..+++.+ .......+.. ..+.+.....++.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~ 78 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKL 78 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHH
Confidence 3445568888888888999999999888776 367778888888888653 2333333221 1233444556777
Q ss_pred HHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhC-CChhHHHHHHHH
Q 045672 119 HVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA-KMNDKALELLIF 165 (643)
Q Consensus 119 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~ 165 (643)
+.+.+.++++.-++.++.. |...+..+... ++++.|.+.+.+
T Consensus 79 c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh
Confidence 7777777777777776643 33334444444 667777766664
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=2.2 Score=43.63 Aligned_cols=116 Identities=9% Similarity=0.015 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHh---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 045672 387 FVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGR---------AGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHR 454 (643)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 454 (643)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++-++. ...| |......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456778888888733345665 3344444333221 22345566666555 3333 6666666666677778
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 455 NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 455 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+++.|...|+++..++|+.+.+|...+....-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999988554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.54 E-value=20 Score=39.61 Aligned_cols=185 Identities=12% Similarity=0.146 Sum_probs=85.3
Q ss_pred HhcCCHHHHHHHHhhcCCC----------ChhhHHHHHHH--HHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHH
Q 045672 317 CKCGSLEDAMSVFSRMIQK----------DVISWSTMISG--LAQNGYSQEALKLFE--------SMKVSRIKPNYITIV 376 (643)
Q Consensus 317 ~~~g~~~~A~~~~~~m~~~----------~~~~~~~li~~--~~~~g~~~~A~~l~~--------~m~~~g~~p~~~t~~ 376 (643)
+-.|++..|...++.|.+. ....+...+.| +...|+.+.|+..|. .....+..++...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 3456677777776666321 11233333333 334678888888886 334444333333332
Q ss_pred HH--HHHHhc--cCCHHH--HHHHHHHhHHhcCCCCC--hHHHHHH-HHHHHhc---------CCHHHHHHHH-HhCCCC
Q 045672 377 GV--LFACSH--AGFVED--GWNHFKSMKKFYGIDPG--REHYSCM-IDLLGRA---------GKLQEAVKLI-HEMPYE 437 (643)
Q Consensus 377 ~l--l~a~~~--~g~~~~--a~~~~~~~~~~~~~~p~--~~~~~~l-i~~~~~~---------g~~~~A~~~~-~~m~~~ 437 (643)
.+ +..+.. ....++ ..++++.+.....-.|+ ..++.++ +.++..- ..+.++++.. +..+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 21 111111 112222 55666655442222332 2223333 2222211 1233444444 333211
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC-CcchH-----HHHHHHHHccCChhHHHHHHHHHH
Q 045672 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLD---PQ-DPGTY-----ILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~-~~~~~-----~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
--....-++++.-.-.|+..+..........+- |+ ....| ..+.+.|...|+.++|.....+..
T Consensus 532 ~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 111122334444222677777666655555432 22 11233 245556788899999999887664
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.34 E-value=5.7 Score=33.01 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=50.7
Q ss_pred hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 045672 318 KCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKS 397 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 397 (643)
.||++......+-.+. .+..-....+..+.+.|+-+.-.++++++.+. -.|++..+..+..||.+.|+..++.+++.+
T Consensus 68 ~C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp G-S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3444444444433321 12233455667778888888888888887653 377888888889999999999999999888
Q ss_pred hHHhcCC
Q 045672 398 MKKFYGI 404 (643)
Q Consensus 398 ~~~~~~~ 404 (643)
+.++ |+
T Consensus 146 ACek-G~ 151 (161)
T PF09205_consen 146 ACEK-GL 151 (161)
T ss_dssp HHHT-T-
T ss_pred HHHh-ch
Confidence 8774 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.32 E-value=3.5 Score=42.35 Aligned_cols=147 Identities=15% Similarity=0.093 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 045672 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430 (643)
Q Consensus 351 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 430 (643)
.+.+.-+++-++..+ +.||..+-..++ +--.+..+.++.+++++..+. + ...+..- ......|.. .+.
T Consensus 182 Rnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~~---~e~ 249 (539)
T PF04184_consen 182 RNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGHF---WEA 249 (539)
T ss_pred CCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccch---hhh
Confidence 344444555555554 456654433333 333455678888888777652 1 0000000 000011111 111
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCcC
Q 045672 431 IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ--DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKE 508 (643)
Q Consensus 431 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 508 (643)
+..-..+|-..+=..+...+.+.|+.++|++.++++++..|. +......|+..+...+.+.++..++.+-.+..+++.
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS 329 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS 329 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence 111111122333345666678888888888888888877665 445777888888888888888888887765555444
Q ss_pred C
Q 045672 509 P 509 (643)
Q Consensus 509 ~ 509 (643)
.
T Consensus 330 A 330 (539)
T PF04184_consen 330 A 330 (539)
T ss_pred H
Confidence 3
|
The molecular function of this protein is uncertain. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=4.2 Score=35.45 Aligned_cols=84 Identities=11% Similarity=-0.022 Sum_probs=35.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 427 (643)
-+.|++++|..+|+-+...+ .-|..-+..|..+|-..+++++|...|.....- . .-|+..+--....|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHH
Confidence 34555555555555544422 112222333333334445555555555444321 1 11222222233444455555555
Q ss_pred HHHHHhC
Q 045672 428 VKLIHEM 434 (643)
Q Consensus 428 ~~~~~~m 434 (643)
...|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5544443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.79 E-value=10 Score=34.61 Aligned_cols=160 Identities=14% Similarity=0.075 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
..||-+.--+...|+++.|.+.|+...+....- ..+...-.-++.-.|++..|.+=|...-+.-.-.|=...|--++
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-- 176 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-- 176 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH--
Confidence 356666666667777777777777766543211 22222222234445677766655544433211111112222221
Q ss_pred HHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHccCC
Q 045672 418 LGRAGKLQEAVKLI-HEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD-------PGTYILLSNIYANSQK 489 (643)
Q Consensus 418 ~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~ 489 (643)
.+.-++.+|..-+ ++.. ..|..-|...|-.+.--.-.+ +.+++++.+...++ ..+|.-|+.-|...|.
T Consensus 177 -E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 177 -EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred -HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 2333455555433 3331 245555665554432211111 12233333222221 3588999999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 045672 490 WDEVAEVRKTMRARG 504 (643)
Q Consensus 490 ~~~a~~~~~~m~~~g 504 (643)
.++|..+|+.....+
T Consensus 253 ~~~A~~LfKLaiann 267 (297)
T COG4785 253 LDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887644
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.33 Score=30.22 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=20.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 476 TYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 476 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999988854
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.42 E-value=1.8 Score=35.75 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=43.7
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHH---HHHHHHHHHHcC
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM----PYEPDAVT---WRALLGACKVHR 454 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~---~~~ll~~~~~~g 454 (643)
.+..|+++.|++.|..... -.+.....||.-..+|.-+|+.++|++-+++. +-+ .... |..-...|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 3455555555555555543 12234455555555555555555555554443 111 1111 222223356667
Q ss_pred CHHHHHHHHHHHHhcCC
Q 045672 455 NTDLAICAAKKILNLDP 471 (643)
Q Consensus 455 ~~~~a~~~~~~~~~~~p 471 (643)
+-+.|..-|+.+-+++.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 77777776666665554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.8 Score=40.79 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=67.2
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCC
Q 045672 417 LLGRAGKLQEAVKLIHEM-PYEP------DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 489 (643)
-+.+.|++++|..-|... ..-| ..+.|..-..+..+.+..+.|+.-..++++++|....++..-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355677777777766655 1112 123444445667888999999999999999999888888888999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 045672 490 WDEVAEVRKTMRARG 504 (643)
Q Consensus 490 ~~~a~~~~~~m~~~g 504 (643)
+++|.+=++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998743
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.92 E-value=18 Score=39.86 Aligned_cols=83 Identities=12% Similarity=0.094 Sum_probs=37.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh---cCCchhHHhHHHHHHHh---
Q 045672 245 IGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHDLILNNALLDMYCK--- 318 (643)
Q Consensus 245 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~---~~~~~~~~~~Li~~y~~--- 318 (643)
...+.-.|+++.|++++.+ ..+...|.+.+...+.-+.-+.-.+.. ...+.. -.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~---~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSS---SAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCcc---ccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445567999999998876 333455666666665554332222111 122222 11111445667777765
Q ss_pred cCCHHHHHHHHhhc
Q 045672 319 CGSLEDAMSVFSRM 332 (643)
Q Consensus 319 ~g~~~~A~~~~~~m 332 (643)
..+..+|...|--+
T Consensus 340 ~td~~~Al~Y~~li 353 (613)
T PF04097_consen 340 ITDPREALQYLYLI 353 (613)
T ss_dssp TT-HHHHHHHHHGG
T ss_pred ccCHHHHHHHHHHH
Confidence 45677777766555
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.91 E-value=2.6 Score=40.74 Aligned_cols=159 Identities=12% Similarity=0.013 Sum_probs=117.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH----HHHHHhcCCH
Q 045672 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM----IDLLGRAGKL 424 (643)
Q Consensus 349 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~ 424 (643)
-+|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...|+...|.-+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888899999998875 566778888888899999999999999988876 345666555443 4455689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHccCChhHHHHHHH
Q 045672 425 QEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ----DPGTYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 425 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
++|++.-++. .+.| |.-.-.++.......|+..++.+...+-...-.. -...|-..+-.|...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998887 5544 4556667777788899999999888775443221 12345566677788899999999998
Q ss_pred HHHhCCCCcCCc
Q 045672 499 TMRARGITKEPG 510 (643)
Q Consensus 499 ~m~~~g~~~~~~ 510 (643)
.-.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 766555555554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.79 E-value=17 Score=35.41 Aligned_cols=72 Identities=6% Similarity=-0.045 Sum_probs=36.2
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 383 (643)
.+-...+.++++.|+..-...+.+.+..++ ..-..+.++...|.. +|+..+.++... .||...-...+.+|.
T Consensus 207 ~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 207 EIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 333444455555555332222333333333 223456677777765 577777776653 346555555555543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.74 E-value=7 Score=34.39 Aligned_cols=132 Identities=12% Similarity=0.023 Sum_probs=77.8
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCC
Q 045672 59 MKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER 138 (643)
Q Consensus 59 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 138 (643)
++.++.+.+.+++|+...+..+++.+.+.|.+....+ ++..++-+|.......+-.+. +....+.++=-.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 4555666678889999999999999999888765544 344445555543333332222 2233333333333332
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH---HHHHHHHH
Q 045672 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIK 200 (643)
Q Consensus 139 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~---~~~~~~~~ 200 (643)
=...+..++..+...|++-+|+++.+.... .+......++.+..+.+|.. .++.....
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223577788889999999999998877532 22233344555655554443 44444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.66 E-value=23 Score=36.73 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhcCCCCc
Q 045672 458 LAICAAKKILNLDPQDP 474 (643)
Q Consensus 458 ~a~~~~~~~~~~~p~~~ 474 (643)
.|.++.+++.+.+|.-+
T Consensus 364 ~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 35677888887777544
|
The molecular function of this protein is uncertain. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.35 E-value=16 Score=34.40 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=91.5
Q ss_pred HhcCCHHHHHHHHhhcCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhcc--
Q 045672 317 CKCGSLEDAMSVFSRMIQKDV------ISWSTMISGLAQNGYSQEALKLFESMKVSR-IKPN--YITIVGVLFACSHA-- 385 (643)
Q Consensus 317 ~~~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~-- 385 (643)
.+.|++++|.+.|+.+..+.+ .+--.++-++-+.+++++|+..+++....- -.|| ...|...+..+...
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 356888888888888754321 223334556667888888888888876642 2233 23333333322221
Q ss_pred --CC---HHHHHHHHHHhHHhcCC---CCChH------------HHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CH
Q 045672 386 --GF---VEDGWNHFKSMKKFYGI---DPGRE------------HYSCMIDLLGRAGKLQEAVKLIHEM----PYEP-DA 440 (643)
Q Consensus 386 --g~---~~~a~~~~~~~~~~~~~---~p~~~------------~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~ 440 (643)
.+ ..+|..-|+.+.+++.- .||.. +=..+..-|.+.|.+..|..-+++| +..+ ..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 22 23444555555554221 12221 1123456788999998888877777 2112 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 441 VTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 441 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
..+-.+..+|...|-.++|....+-+....|+++
T Consensus 205 eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 205 EALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 3455677889999999999888766655556554
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=33 Score=37.94 Aligned_cols=115 Identities=8% Similarity=0.033 Sum_probs=54.7
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 045672 350 NGYSQEALKLFESMKVSR-IKPNYI--TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426 (643)
Q Consensus 350 ~g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 426 (643)
..+.+.|..++....... +.+... ....+.......+..+++...+...... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 345567777777663332 333322 2222322222222244555555543321 1233333444444447777777
Q ss_pred HHHHHHhCCCC-CCHHHHHH-HHHHHHHcCCHHHHHHHHHHHH
Q 045672 427 AVKLIHEMPYE-PDAVTWRA-LLGACKVHRNTDLAICAAKKIL 467 (643)
Q Consensus 427 A~~~~~~m~~~-p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~ 467 (643)
+...|..|+.. .+...|.- +..+....|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777777321 11112221 2334445677777777777763
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.30 E-value=20 Score=35.42 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=94.8
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHH-cCCCCC---HHHHHHHHHHHhcCChhHhHHHHHHHHhh---cC----Cchh
Q 045672 239 VVWNSIIGGFAQNSDVDEALNLYKRMKR-AGFAAD---QSTLTSVLRACTGLALLELGTQVHVHVLK---YD----HDLI 307 (643)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~---~~----~~~~ 307 (643)
.+|-.+..++-+..++.+++.+-..-.. .|..|. .....++-.|....+.++++.+.|+.+.+ .. ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3455555666555566666665443332 233331 12334466677777888888888888887 11 2346
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhc-------CCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCC
Q 045672 308 LNNALLDMYCKCGSLEDAMSVFSRM-------IQKDVI------SWSTMISGLAQNGYSQEALKLFESMK----VSRIKP 370 (643)
Q Consensus 308 ~~~~Li~~y~~~g~~~~A~~~~~~m-------~~~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p 370 (643)
++.+|...|.+..++++|.-...+. .-.|.. +...|..++...|+..+|.+.-++.. ..|-+|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 8888889999888888876544433 212322 12234456667777777777776643 334232
Q ss_pred C-HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 045672 371 N-YITIVGVLFACSHAGFVEDGWNHFKSMK 399 (643)
Q Consensus 371 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 399 (643)
- ......+...|...|+.+.|+.-|+...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 2334455566777778777776665543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.02 E-value=23 Score=35.72 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ----DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
....+|..+...+++.|+++.|...+.++....+. .+.....-+......|+.++|...++...+..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34557899999999999999999999999886522 45677778999999999999999998887743
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.61 E-value=33 Score=37.86 Aligned_cols=85 Identities=8% Similarity=0.078 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 045672 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419 (643)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 419 (643)
-+.|+.+|.+.++.++-.++.+.-. .|.. ..-+...+..|.+.+-.++|..+-... +. +. ..+--.+-
T Consensus 434 ttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~----~~--he---~vl~ille 501 (933)
T KOG2114|consen 434 TTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKF----KK--HE---WVLDILLE 501 (933)
T ss_pred HHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHh----cc--CH---HHHHHHHH
Confidence 3456666666666665555444332 2211 111233444555555566664443222 21 11 12222344
Q ss_pred hcCCHHHHHHHHHhCCC
Q 045672 420 RAGKLQEAVKLIHEMPY 436 (643)
Q Consensus 420 ~~g~~~~A~~~~~~m~~ 436 (643)
..|++++|++.+..+|.
T Consensus 502 ~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 502 DLHNYEEALRYISSLPI 518 (933)
T ss_pred HhcCHHHHHHHHhcCCH
Confidence 56778888888887753
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.58 E-value=2.4 Score=40.72 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=59.3
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESMKV-----SRIKPNYITIVGV 378 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~l 378 (643)
.++..++..+..+|+.+.+.+.++++... |...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45677888899999999999998888543 566899999999999999999999988754 5677776665554
Q ss_pred HHH
Q 045672 379 LFA 381 (643)
Q Consensus 379 l~a 381 (643)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.65 Score=28.17 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
+|..+...+...|++++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666677778888888888887777773
|
... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.41 E-value=0.66 Score=28.82 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNL 469 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 469 (643)
+|..|...|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677778888888888888888885543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.26 E-value=2 Score=41.21 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
++..++..+...|+++.+...++++++.+|-+...|..++.+|.+.|+...|...++++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445556666777777777777777777777777777788888888888777777777764
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.13 E-value=19 Score=35.28 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045672 254 VDEALNLYKRMKRAGFAADQSTLTSVLRA 282 (643)
Q Consensus 254 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 282 (643)
+++.+.+++.|.+.|++-+..++.+..-.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i 106 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALII 106 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHH
Confidence 45567788899999999988888664443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.28 E-value=21 Score=33.02 Aligned_cols=87 Identities=16% Similarity=0.329 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHhHHhcCCCC-ChHHHHHH---HHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHH---HHH--HHHH-
Q 045672 386 GFVEDGWNHFKSMKKFYGIDP-GREHYSCM---IDLLGRAGKLQEAVKLIHEM---PYEPDAVTWRA---LLG--ACKV- 452 (643)
Q Consensus 386 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l---i~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll~--~~~~- 452 (643)
.++++|+..|+..-+-|.... +...--|+ .+.-+..+++.+|+++|++. ....+..-|.. ++. .|.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 456666666666554332222 22222233 33445678899999999887 23333333432 222 2333
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 045672 453 HRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~p~ 472 (643)
..+.-.+...+++..+++|.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPA 227 (288)
T ss_pred cccHHHHHHHHHHHHhcCCc
Confidence 36777788889999999997
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.48 E-value=3.4 Score=35.18 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=41.8
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
...++.++++.++..+.-+.|+.+..-..-+..+...|+|++|.++++...+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 347777888888888877888877777777788888888888888888777654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.38 E-value=3.7 Score=35.60 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=26.3
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..++.+.++.++.-+.-+.|..+..-..-+..+...|+|.+|.++++.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555555555554444555555555555555555555443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.35 E-value=30 Score=33.70 Aligned_cols=121 Identities=16% Similarity=0.007 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG-FVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
.-...+.++.+.|+ ++|+..+-.+.. .+|...-...+.++.+.+ .-+.+...+..+.. .++..+-...+.+
T Consensus 144 VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~a 215 (280)
T PRK09687 144 VRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIG 215 (280)
T ss_pred HHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHH
Confidence 33344444444444 344444444443 233333333344444332 12334444444433 2444555555556
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 418 LGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
+++.|...-.-.+++.+. .++ .....+.++...|+. +|...+.++.+..|
T Consensus 216 Lg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 216 LALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 666665322222233332 122 223455556666653 46666666666555
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.96 E-value=21 Score=31.47 Aligned_cols=134 Identities=12% Similarity=0.121 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 045672 95 LVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174 (643)
Q Consensus 95 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 174 (643)
+....+.+.++.|+...+..+++.+.+.|++.....++..-.-+|...-...+-.+. +....+.++--+|...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR----- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR----- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-----
Confidence 344455566777888888888888888888777777666544444444333332222 1222233332223211
Q ss_pred hhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCCh
Q 045672 175 MFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDV 254 (643)
Q Consensus 175 ~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 254 (643)
. + ..+..++..+...|++-+|.++......-+...-..++.+-.+.++.
T Consensus 88 -------------L-------------~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~ 136 (167)
T PF07035_consen 88 -------------L-------------G-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDD 136 (167)
T ss_pred -------------h-------------h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCH
Confidence 0 0 01223566777788888888888776555555556667776666665
Q ss_pred hHHHHHHHHHHH
Q 045672 255 DEALNLYKRMKR 266 (643)
Q Consensus 255 ~~A~~~~~~m~~ 266 (643)
.-=..+|+-..+
T Consensus 137 ~lf~~V~~ff~~ 148 (167)
T PF07035_consen 137 QLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHHHH
Confidence 555555544444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.19 E-value=1.9 Score=28.15 Aligned_cols=27 Identities=7% Similarity=-0.075 Sum_probs=15.5
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhC
Q 045672 42 LLDDFTRFCYQRDLPRAMKAMHAMQCH 68 (643)
Q Consensus 42 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 68 (643)
|..+-..|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555666666666666665554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.18 E-value=40 Score=33.96 Aligned_cols=148 Identities=12% Similarity=0.013 Sum_probs=71.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHH
Q 045672 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP---NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG--REH 410 (643)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 410 (643)
...+|..++..+.+.|+++.|...+.++...+..+ .......-....-..|+..+|...++...+. .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 34467777777777777777777777766533111 2222333344445566777777766666551 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 045672 411 YSCMIDLLGRAGKLQEAVKL-IHEMPYEPDAVTWRALLGACKVH------RNTDLAICAAKKILNLDPQDPGTYILLSNI 483 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 483 (643)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000011222222223333 788889999999999999877777777766
Q ss_pred HHc
Q 045672 484 YAN 486 (643)
Q Consensus 484 ~~~ 486 (643)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 643
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.94 E-value=22 Score=31.86 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC------hHH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY--ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG------REH 410 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~ 410 (643)
.+..+..-|++.|+.++|++.|.++.+....|.. ..+..++..+...+++..+.....+......-..+ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3444555555555555555555555544333332 22334445555555555555555444432111011 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
|..|. +...+++.+|-+.|-+.
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 33332 22356777777776655
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.73 E-value=1 Score=38.78 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=49.5
Q ss_pred HHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCC
Q 045672 45 DFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL 124 (643)
Q Consensus 45 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 124 (643)
+|..+.+.+.+.....+++.+...+...+....+.++..|++.++.+.....++. .+.+-...++..+-+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4666777777788888888777665555677777788888777665555555441 111222344455555555
Q ss_pred hhHHHHHHccCC
Q 045672 125 LEEAQVLFDQMP 136 (643)
Q Consensus 125 ~~~A~~~f~~m~ 136 (643)
+++|.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 555555555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.69 E-value=1.9 Score=26.05 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKV 365 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 365 (643)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566677777777777777777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.67 E-value=13 Score=32.55 Aligned_cols=121 Identities=16% Similarity=0.091 Sum_probs=69.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHH--HHHHHhcC
Q 045672 347 LAQNGYSQEALKLFESMKVSRIKPNYI-TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE-HYSCM--IDLLGRAG 422 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g 422 (643)
+++.|..++|+.-|.++.+.|...-++ ..........+.|+...|...|+++-+... .|-+. -...| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccc
Confidence 355666777777777777766432211 111122334567777777777777766422 22211 11111 22355677
Q ss_pred CHHHHHHHHHhCCCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 423 KLQEAVKLIHEMPYE--PD-AVTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 423 ~~~~A~~~~~~m~~~--p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
.+++.....+.+... |- ...-.+|.-+-.+.|++..|.+.|.++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888877777776322 22 22334555556778888888888888766
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.58 E-value=24 Score=30.77 Aligned_cols=87 Identities=17% Similarity=0.113 Sum_probs=48.8
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGRE-HYSCMIDLLGRAGKLQEAVKLIHEMP-YEPDAVTWRALLGACKVHRNTDLA 459 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a 459 (643)
-...++.+++..++..+.- +.|... .-..-.-.+.+.|++++|..+|+++. ..|....-.+|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 3455677777777776654 344322 22223344567788888888887773 234444555666666554433333
Q ss_pred HHHHHHHHhcCC
Q 045672 460 ICAAKKILNLDP 471 (643)
Q Consensus 460 ~~~~~~~~~~~p 471 (643)
....+++++.++
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 444555555554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.99 E-value=6.6 Score=30.60 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
+.-++.+-++.+....+.|++....+.|.||-+.+++..|.++|+.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3446667777777788899999999999999999999999999998876433 24446666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.97 E-value=13 Score=29.20 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 045672 88 HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFML 167 (643)
Q Consensus 88 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 167 (643)
...++|.-|-+.+...+-. ...+--.-++.+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.+|.
T Consensus 19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 4567787777777665422 33333334456778999999999999999999999988765 45677777777777787
Q ss_pred HCCCCCChhhHHH
Q 045672 168 REGVRPNMFTYSA 180 (643)
Q Consensus 168 ~~g~~p~~~t~~~ 180 (643)
.+| .|...+|..
T Consensus 96 ~sg-~p~lq~Faa 107 (115)
T TIGR02508 96 ASG-DPRLQTFVA 107 (115)
T ss_pred hCC-CHHHHHHHH
Confidence 766 555555544
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.75 E-value=8.8 Score=30.28 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 355 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5666677777778899999999999999999999999999999987644 33336776664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.50 E-value=5.5 Score=36.00 Aligned_cols=75 Identities=20% Similarity=0.339 Sum_probs=53.0
Q ss_pred HhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHccCChhH
Q 045672 419 GRAGKLQEAVKLIHEMPYEP--DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ----DPGTYILLSNIYANSQKWDE 492 (643)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 492 (643)
.+.|+ ++|.+.|-++.-.| +....-..+..|....|.++++.++.+++++.++ |+..+.+|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 56777776663333 3333444445566688999999999999986422 67899999999999999988
Q ss_pred HH
Q 045672 493 VA 494 (643)
Q Consensus 493 a~ 494 (643)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.30 E-value=1.9 Score=41.67 Aligned_cols=110 Identities=12% Similarity=0.037 Sum_probs=77.7
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCH
Q 045672 380 FACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGACKVHRNT 456 (643)
Q Consensus 380 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~ 456 (643)
+-|.++|.+++|+..|..... +.| +..++..-..+|.+..++..|..-.+.. .+. .-.-.|..-..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 468899999999999987764 455 7888888888999999998887655443 111 1122455555566667899
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHH
Q 045672 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV 496 (643)
Q Consensus 457 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 496 (643)
++|.+-++.+++++|++.. |-..|.......|+.-+
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHH
Confidence 9999999999999998643 44445554555554433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.18 E-value=1.6 Score=26.25 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=24.5
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 475 GTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..+..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=83.68 E-value=14 Score=33.04 Aligned_cols=94 Identities=19% Similarity=0.095 Sum_probs=64.7
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHH
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKD------VISWSTMISGLAQNGYSQEALKLFESMKVS---RIKPNYITIVG 377 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ 377 (643)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......|++..+.....+.... |-.++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345678999999999999999999986653 235667788888899999988888776543 22222222112
Q ss_pred HHH--HHhccCCHHHHHHHHHHhHH
Q 045672 378 VLF--ACSHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 378 ll~--a~~~~g~~~~a~~~~~~~~~ 400 (643)
+.. ++...+++..|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 222 23456888888888866654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.45 E-value=38 Score=31.45 Aligned_cols=24 Identities=8% Similarity=-0.017 Sum_probs=18.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 450 CKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
-...+++.+|+.+|+++....-++
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 356788999999999987655443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.40 E-value=41 Score=31.81 Aligned_cols=245 Identities=18% Similarity=0.264 Sum_probs=147.7
Q ss_pred CCCCchhHHHHHHHHH-HHcCCHHHHHHHHhhCCC----C---CcchHHHHHHHHHhCCChhHHHHHHHHHHH---cCC-
Q 045672 202 GFESDVFVRSALIDIY-AKLGELRNAECVFNEMPT----R---DLVVWNSIIGGFAQNSDVDEALNLYKRMKR---AGF- 269 (643)
Q Consensus 202 g~~~~~~~~~~li~~y-~~~g~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~- 269 (643)
+-+||+..-|..-+.- .+....++|..-|+++.+ + .-.+.-.||..+.+.|++++.++.|.+|.. ..+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4455555544332221 234568889888887754 2 223556789999999999999999998864 112
Q ss_pred -CCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh---cCCc----hhHHhHHHHHHHhcCCHHHHHHHHhhcCCC------
Q 045672 270 -AADQSTLTSVLRACTGLALLELGTQVHVHVLK---YDHD----LILNNALLDMYCKCGSLEDAMSVFSRMIQK------ 335 (643)
Q Consensus 270 -~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~---~~~~----~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~------ 335 (643)
.-+..+.++++.-.+...+.+.-..+++...+ -..+ ..+-+.|...|...|.+.+-.+++.++.+.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 22455677777776666666665555554443 1111 133456778888888888888888877211
Q ss_pred --C-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHh-----ccCCHHHHHHHHHHhHH
Q 045672 336 --D-------VISWSTMISGLAQNGYSQEALKLFESMKVSR-IKPNYITIVGVLFACS-----HAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 336 --~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~ 400 (643)
| ...|..-|..|....+-.+-..+|++...-. --|.+. ...+++-|. +.|.+++|..-|-+.-+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 1 2356667788888777777777888765422 234444 335566663 45778887655444444
Q ss_pred hcCCCCCh-----HHHHHHHHHHHhcCC----HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc
Q 045672 401 FYGIDPGR-----EHYSCMIDLLGRAGK----LQEAVKLIHEMPY--EPDAVTWRALLGACKVH 453 (643)
Q Consensus 401 ~~~~~p~~-----~~~~~li~~~~~~g~----~~~A~~~~~~m~~--~p~~~~~~~ll~~~~~~ 453 (643)
.|.-.-++ --|..|..++.+.|- -++|. |. .|.......|+.+|..+
T Consensus 260 NYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK------PyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 260 NYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK------PYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred cccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC------CCCCCHHHHHHHHHHHHHhcc
Confidence 33322222 235566677776652 11221 33 35566778888888654
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.35 E-value=1.5 Score=24.82 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=18.7
Q ss_pred chHHHHHHHHHccCChhHHHHHHH
Q 045672 475 GTYILLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~a~~~~~ 498 (643)
.+...++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456678888888888888888765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.19 E-value=7.7 Score=30.24 Aligned_cols=62 Identities=8% Similarity=0.076 Sum_probs=48.1
Q ss_pred CcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH-HcCCCCchhHHHHHHH
Q 045672 54 DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVL-SGGFEPETFLVNILLN 117 (643)
Q Consensus 54 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~ 117 (643)
+..++.+-++.+...+.-|++....+.|++|.+.+++..|.++++-+. +.|. +...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 455677777888888889999999999999999999999999999877 3332 3445655553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.85 E-value=64 Score=33.60 Aligned_cols=89 Identities=10% Similarity=-0.014 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHcc
Q 045672 412 SCMIDLLGRAGKLQEAVKLIHEMP-Y-EPDAVTWRALLGAC--KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487 (643)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 487 (643)
+.+++-+.+.|-..+|...+..+. . .|+...+.-++..- ...-+..-+..+|+.+....-.++..|......-...
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccC
Confidence 456666666777777777766652 1 23555565555331 2222355566666666654335555666555555566
Q ss_pred CChhHHHHHHHHH
Q 045672 488 QKWDEVAEVRKTM 500 (643)
Q Consensus 488 g~~~~a~~~~~~m 500 (643)
|..+.+-.++.+.
T Consensus 544 g~~en~~~~~~ra 556 (568)
T KOG2396|consen 544 GRPENCGQIYWRA 556 (568)
T ss_pred CCcccccHHHHHH
Confidence 6666655555443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.75 E-value=21 Score=36.55 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=48.4
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHH
Q 045672 417 LLGRAGKLQEAVKLIHEMP--YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 494 (643)
.....|+++.+...+.... +.....+...++......|+.++|....+.++.-+-+++.....-+..-...|-++++.
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 3445566666666555441 12233455555666666666666666666666555444444443334444556666777
Q ss_pred HHHHHHHhCC
Q 045672 495 EVRKTMRARG 504 (643)
Q Consensus 495 ~~~~~m~~~g 504 (643)
..|+++..-+
T Consensus 412 ~~wk~~~~~~ 421 (831)
T PRK15180 412 HYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccC
Confidence 7776665433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=82.50 E-value=1.8 Score=26.41 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=13.5
Q ss_pred cCCchhHHhHHHHHHHhcCCHHHHH
Q 045672 302 YDHDLILNNALLDMYCKCGSLEDAM 326 (643)
Q Consensus 302 ~~~~~~~~~~Li~~y~~~g~~~~A~ 326 (643)
.+.+...|+.|...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444455555555555555555553
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=82.46 E-value=61 Score=33.06 Aligned_cols=181 Identities=16% Similarity=0.220 Sum_probs=118.3
Q ss_pred cCCHHHHHHHHhhcCCC----ChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHH
Q 045672 319 CGSLEDAMSVFSRMIQK----DVISWSTMISGL-AQNGYSQEALKLFESMKVSRIKPN----YITIVGVLFACSHAGFVE 389 (643)
Q Consensus 319 ~g~~~~A~~~~~~m~~~----~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~ 389 (643)
.|+.++|.+.|..+... ....|-+|+.+- ....++.+|+++|+...- ..|- +..+.--+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 68999999999888543 445677777654 446689999999998765 2454 334444455668899999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHH-HHHHHHHhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045672 390 DGWNHFKSMKKFYGIDPGREHYS-CMIDLLGRA---GKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKK 465 (643)
Q Consensus 390 ~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~---g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 465 (643)
++..+-....++|...|=...|. .++..+.+. -..+.-.+++..|.-.--...|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99888777777666666433332 233333333 33455556666664222345788888888999999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHH-----ccCChhHHHHHHHHHHh
Q 045672 466 ILNLDPQDPGTYILLSNIYA-----NSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 466 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~m~~ 502 (643)
+..+...+ ..-...+..|. -..+.+++.+.+..+-.
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 99876432 23344444553 23456666666655543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.44 E-value=2.3 Score=27.04 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=22.7
Q ss_pred chHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 475 GTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678889999999999999999888764
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.86 E-value=7.9 Score=30.54 Aligned_cols=63 Identities=6% Similarity=0.037 Sum_probs=43.0
Q ss_pred CcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 54 DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 54 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
+..+..+-++.+...++-|++....+.|++|.+.+++..|.++++.+...- .+....|..++.
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 344677777777778888999999999999999999999999998887542 223336665554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.34 E-value=0.88 Score=39.20 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=66.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhH
Q 045672 79 ELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDK 158 (643)
Q Consensus 79 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 158 (643)
.+++.+.+.+.++.....++.+.+.+...+....+.++..|++.++.+...++++.... .....++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666777788888889999999877667789999999999999988999998884443 444567777888888888
Q ss_pred HHHHHHHHH
Q 045672 159 ALELLIFML 167 (643)
Q Consensus 159 A~~~~~~m~ 167 (643)
|.-++.++-
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 888877754
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.68 E-value=66 Score=32.33 Aligned_cols=189 Identities=16% Similarity=0.230 Sum_probs=113.6
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHH--HHHHHHCCCCCCHHHHHHHHHHHhc
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL--FESMKVSRIKPNYITIVGVLFACSH 384 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l--~~~m~~~g~~p~~~t~~~ll~a~~~ 384 (643)
.+...+++.+...++|+.--+.. ....-++|+...|+.- .+-|.--.-.||..|-..++..+-.
T Consensus 53 kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~ 118 (439)
T KOG1498|consen 53 KVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIETLRT 118 (439)
T ss_pred HHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH
Confidence 34455666666666665443321 2223456777776652 2333333335666666666554321
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHH
Q 045672 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRAL------------LGACKV 452 (643)
Q Consensus 385 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------l~~~~~ 452 (643)
+.++ ++|-+..+ ...-..|...+-.+|++++|..++.+.+++ ||+++ +..|..
T Consensus 119 ---Vteg-kIyvEvER-------arlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~ 183 (439)
T KOG1498|consen 119 ---VTEG-KIYVEVER-------ARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLL 183 (439)
T ss_pred ---hhcC-ceEEeehH-------HHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHH
Confidence 1111 11111111 223345677888999999999999887532 33332 366888
Q ss_pred cCCHHHHHHHHHHHHhcC---CC----CcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeEEEECCEEEEEE
Q 045672 453 HRNTDLAICAAKKILNLD---PQ----DPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFN 524 (643)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~---p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~ 524 (643)
.+|+-.|.-+.+++.... |+ ....|..++.+..+.+.+=++-+.++..-+.|..+....-|+.+-..+-.|+
T Consensus 184 ~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~ 262 (439)
T KOG1498|consen 184 RLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFC 262 (439)
T ss_pred hhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEE
Confidence 999999998888886532 22 1236888899999999999999999999887766554344665443443444
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=80.38 E-value=75 Score=33.00 Aligned_cols=149 Identities=10% Similarity=-0.021 Sum_probs=64.8
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCC----cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHhcCC
Q 045672 214 IDIYAKLGELRNAECVFNEMPTRD----LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL--TSVLRACTGLA 287 (643)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~a~~~~~ 287 (643)
+...+..|+.+.+..+++.-...+ ..-++. +...+..|+. ++++.+.+.|..|+.... .+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 444456677776666665433211 111222 2223344554 344444555655543211 12233333455
Q ss_pred hhHhHHHHHHHHhhc-CCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHH
Q 045672 288 LLELGTQVHVHVLKY-DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI---SWSTMISGLAQNGYSQEALKLFESM 363 (643)
Q Consensus 288 ~~~~a~~i~~~~~~~-~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m 363 (643)
+.+..+.+.+.-... ..+. ...+.+...+..|+.+-+..+++.-..++.. ...+.+...+..|+.+ +.+-+
T Consensus 147 ~~~~v~~Ll~~g~~~~~~d~-~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~L 221 (413)
T PHA02875 147 DIKGIELLIDHKACLDIEDC-CGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLF 221 (413)
T ss_pred CHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHH
Confidence 555544444332221 1111 1223334445567777666666544333322 1123343334555543 44444
Q ss_pred HHCCCCCCH
Q 045672 364 KVSRIKPNY 372 (643)
Q Consensus 364 ~~~g~~p~~ 372 (643)
.+.|..|+.
T Consensus 222 l~~gad~n~ 230 (413)
T PHA02875 222 IKRGADCNI 230 (413)
T ss_pred HHCCcCcch
Confidence 556666653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=80.36 E-value=60 Score=31.61 Aligned_cols=61 Identities=10% Similarity=-0.101 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 045672 339 SWSTMISGLAQNGYSQ---EALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKF 401 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 401 (643)
+...++.+|...+..+ +|..+++.+... -|+ ...+..-+..+.+.++.+++.+.+..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4455566666655433 445555555433 233 333434455555566777777777777663
|
It is also involved in sporulation []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.6 bits (145), Expect = 1e-09
Identities = 16/147 (10%), Positives = 40/147 (27%), Gaps = 7/147 (4%)
Query: 301 KYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK-------DVISWSTMISGLAQNGYS 353
+ A L A + + + ++ ++ G A+ G
Sbjct: 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF 181
Query: 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413
+E + + +K + + P+ ++ L G+ +
Sbjct: 182 KELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAV 241
Query: 414 MIDLLGRAGKLQEAVKLIHEMPYEPDA 440
++ RA L+ K+ P
Sbjct: 242 LLSEEDRATVLKAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.8 bits (130), Expect = 6e-08
Identities = 24/237 (10%), Positives = 65/237 (27%), Gaps = 14/237 (5%)
Query: 8 KLKWTKPSSQARQFSLTITPPVASCNTITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQC 67
L+ K + Q R L + + + + L R A +
Sbjct: 29 ILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRL---LSKQMAGCLEDCTRQ 85
Query: 68 HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEE 127
A L++ + +++ + + + + L
Sbjct: 86 APESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPL 145
Query: 128 AQVLFDQMPER-------NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSA 180
A L + + + ++ + + + +L + G+ P++ +Y+A
Sbjct: 146 AHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205
Query: 181 VL----RACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233
L R + + + + G + + L+ + L+ V
Sbjct: 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.4 bits (121), Expect = 8e-07
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 212 ALIDIYAKLGELRNAECVFNEMPTR-------DLVVWNSIIGGFAQNSDVDEALNLYKRM 264
A +L A + + L ++N+++ G+A+ E + + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 265 KRAGFAADQSTLTSVLRAC 283
K AG D + + L+
Sbjct: 192 KDAGLTPDLLSYAAALQCM 210
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 4e-09
Identities = 91/611 (14%), Positives = 173/611 (28%), Gaps = 160/611 (26%)
Query: 3 LKAVSKLKWT---KPSSQARQFSLTITPP-----VASCNTITRNSSSLLDDFTRFCYQRD 54
+ +L WT K ++F + ++ T R S + QRD
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS---MMTRMYIEQRD 117
Query: 55 LPRAMKAMHAMQCHGV-RADSVTYAELIKCCLARHAVEEAKLVHNHVLSG--GFEPETFL 111
R + V R +L R A+ E + N ++ G G +T++
Sbjct: 118 --RLYNDNQVFAKYNVSRLQPYL--KL------RQALLELRPAKNVLIDGVLGSG-KTWV 166
Query: 112 VNILLNMHVKFSLLEEAQVLFDQMPERNV---VSWTTMISAYCDAKMND-KALELLIFML 167
V + + + W + C++ + L+ L++ +
Sbjct: 167 A---------------LDVCLSYKVQCKMDFKIFWLNL--KNCNSPETVLEMLQKLLYQI 209
Query: 168 REGVRPNMFTYSAVLRACDSLII-LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNA 226
S + S+ LR+L +S + L+ L ++NA
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRL--------LKSKPYENCLLV-----LLNVQNA 256
Query: 227 ECV--FNE-----MPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQST--LT 277
+ FN + TR V + + + +D D+ L
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH--------HSMTLTPDEVKSLLL 308
Query: 278 SVL---------RACTG--LALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLE--- 323
L T L + + + +D+ +N L + SL
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLE 367
Query: 324 --------DAMSVFSRMIQKDV--------ISWSTMISGLAQNGYSQEALKLFE--SMKV 365
D +SVF + W +I + S+
Sbjct: 368 PAEYRKMFDRLSVF----PPSAHIPTILLSLIWFDVIKSD-----VMVVVNKLHKYSLVE 418
Query: 366 SRIKPNYITIVGVLFACS---------HAGFVEDGWNHFKSMKKFYGIDPGREH---YSC 413
+ K + I+I + H V+ H+ K F D + Y
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVD----HYNIPKTFDSDDLIPPYLDQYFY 474
Query: 414 MIDLLGRAGKLQEAVKLIHEMP--YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
+G K E + + + D + L K+ R+ A A+ ILN
Sbjct: 475 --SHIGHHLKNIEHPERMTLFRMVFL-D-FRF---LEQ-KI-RHDSTAWNASGSILNT-L 524
Query: 472 QDPGTYILLSNIYANSQKWDE-VAEVRKTMRARG--ITKEPGCSWIEVNKQIHAFN---- 524
Q Y I N K++ V + + + + +I
Sbjct: 525 QQLKFY--KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL----RIALMAEDEA 578
Query: 525 VADSSHPQIDK 535
+ + +H Q+ +
Sbjct: 579 IFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 3e-05
Identities = 66/434 (15%), Positives = 119/434 (27%), Gaps = 152/434 (35%)
Query: 298 HVLKYDHDLILNNALLDMYCKCGSLEDAMSVF-SRMIQKD------VISWSTMISGLAQN 350
H++ + L E+ + F +++ + I +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 351 GYSQEALKL------FESMKVSRIKP--------------NYITIVG---------VLFA 381
Y ++ +L F VSR++P + I G L
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 382 CSHAGFV---EDG--WNHFKSMKK-----------FYGIDPG---REHYSCMIDLLGRAG 422
C + W + K+ Y IDP R +S I L R
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL--RIH 228
Query: 423 KLQEAVK-LIHEMPYEP---------DAVTWRALLGACKV---HRN---TDLAICAAKKI 466
+Q ++ L+ PYE +A W A +CK+ R TD A
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 467 LNLDPQDPG-----TYILLSNIYANSQKWDEVAEVRKT------MRARGITKEPGCSWIE 515
++LD LL Y + + D EV T + A I ++ +W
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESI-RDGLATWDN 346
Query: 516 VNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYH 575
H DK+ ++ + L P E ++ +
Sbjct: 347 WK------------HVNCDKLTTIIESSLNVL-----EPA----------EYRK---MF- 375
Query: 576 SEKLAIVFGLMSLTQGKTIRIRKNLRICGDCHTFAKL------------TAKMENQTIVI 623
++L++ F + I + + K+ ++V
Sbjct: 376 -DRLSV-F-------------PPSAHI--PTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 624 RDP----IRYHHFQ 633
+ P I
Sbjct: 419 KQPKESTISIPSIY 432
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 6e-07
Identities = 43/289 (14%), Positives = 90/289 (31%), Gaps = 56/289 (19%)
Query: 216 IYAKLGELRNAECVFN---EMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD 272
+ K G+L AE F + + + S + ++ + + +A A
Sbjct: 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQ-------SQLIKSDEMQRLRSQALNAFG 155
Query: 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332
T+ + +LE+ D +L A + K G A+S
Sbjct: 156 SGDYTAAIAFLD--KILEVCVW--------DAELRELRAEC--FIKEGEPRKAISDLKAA 203
Query: 333 IQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389
+ + ++ + + Q G + +L + ++ ++ +
Sbjct: 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVR--ECLKLDQDH----------------K 245
Query: 390 DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHE-MPYEPD--AVTWRAL 446
+ H+K +KK + L R G+ +A M EP T R+
Sbjct: 246 RCFAHYKQVKKL-------NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSK 298
Query: 447 LGACKVHR---NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
C AI ++L ++P + + Y + +DE
Sbjct: 299 ERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDE 347
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 29/192 (15%), Positives = 57/192 (29%), Gaps = 34/192 (17%)
Query: 316 YCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
+ G + A+ +++I + L + G EA F+ KV + P+
Sbjct: 47 FLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFK--KVLKSNPSE 104
Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV---- 428
++ + K D + S +D A+
Sbjct: 105 ----------------QEEKEAESQLVK---ADEMQRLRSQALDAF-DGADYTAAITFLD 144
Query: 429 KLIHEMPYEPDAVTWRALLGACKVHR-NTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487
K++ R L C + AI K L + + +S +Y
Sbjct: 145 KILE---VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQL 201
Query: 488 QKWDE-VAEVRK 498
+ ++EVR+
Sbjct: 202 GDHELSLSEVRE 213
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 28/186 (15%), Positives = 59/186 (31%), Gaps = 34/186 (18%)
Query: 316 YCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
+ K G A+S + + ++ + + Q G + +L + ++ ++
Sbjct: 164 FIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVR--ECLKLDQDH 221
Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432
+ + H+K +KK + L R G+ +A
Sbjct: 222 ----------------KRCFAHYKQVKKL-------NKLIESAEELIRDGRYTDATSKYE 258
Query: 433 E-MPYEPD--AVTWRALLGACKVHRNT---DLAICAAKKILNLDPQDPGTYILLSNIYAN 486
M EP T R+ C AI ++L ++P + + Y
Sbjct: 259 SVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318
Query: 487 SQKWDE 492
+ +DE
Sbjct: 319 EEMYDE 324
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 43/319 (13%), Positives = 88/319 (27%), Gaps = 41/319 (12%)
Query: 202 GFESDVFVRSALIDIYAKLGELRNAECVFNEM----PTRDLVVWNSIIGGFAQNSDVDEA 257
G + ++ V +L + + + + + + + P IG + + +E
Sbjct: 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFH-ASCLPVHIGTLVELNKANEL 75
Query: 258 LNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYC 317
L + D V G L +G + L +
Sbjct: 76 FYLSHK------LVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWI 129
Query: 318 KCGS-------LEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367
G + AM+ + Q + + S+ A + F +
Sbjct: 130 AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS--QALS 187
Query: 368 IKPNYITI---VGVLFACSHAGFVEDGWNHFK---SMKKFYGIDPGREHYSCMIDLLGRA 421
I P + VGV G + F K G + + + +++ LG
Sbjct: 188 IAPEDPFVMHEVGV--VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245
Query: 422 ----GKLQEAV----KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473
K EA+ + + +P + + N + A+ L L D
Sbjct: 246 CRKLKKYAEALDYHRQALVLIPQNASTYSAIGY--IHSLMGNFENAVDYFHTALGLRRDD 303
Query: 474 PGTYILLSNIYANSQKWDE 492
+ +L + E
Sbjct: 304 TFSVTMLGHCIEMYIGDSE 322
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 9/90 (10%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 411 YSCMIDLLGRAGKLQEAV----KLIHEMPYEPDAVTWRALLGACKVH-RNTDLAICAAKK 465
+ + + ++ + P+ + + V + + K
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP---VHIGTLVELNKANELFYLSHK 81
Query: 466 ILNLDPQDPGTYILLSNIYANSQKWDEVAE 495
+++L P +P ++ + Y +E A
Sbjct: 82 LVDLYPSNPVSWFAVGCYYLMVGHKNEHAR 111
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 24/184 (13%), Positives = 49/184 (26%), Gaps = 29/184 (15%)
Query: 316 YCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
+ A+S R ++ + + + ++A ++ R P Y
Sbjct: 108 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR--DWLRYTPAY 165
Query: 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL-- 430
+ G+ P + ++ L E +L
Sbjct: 166 ----------------AHLVTPAEEGAGGAGLGPSKR----ILGSLLSDSLFLEVKELFL 205
Query: 431 --IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488
+ P D L + D A+ L++ P D + L AN
Sbjct: 206 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN 265
Query: 489 KWDE 492
+ +E
Sbjct: 266 QSEE 269
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 1e-05
Identities = 41/231 (17%), Positives = 75/231 (32%), Gaps = 16/231 (6%)
Query: 335 KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394
S + + + + G +EA++L+ K + P + A S+ V
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYR--KALEVFPEFA------AAHSNLASVLQQQGK 58
Query: 395 FKSMKKFY----GIDPGR-EHYSCMIDLLGRAGKLQEAVKLIHE-MPYEPD-AVTWRALL 447
+ Y I P + YS M + L +Q A++ + P A L
Sbjct: 59 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118
Query: 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITK 507
K N AI + + L L P P Y L++ W + E K + + +
Sbjct: 119 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178
Query: 508 EPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVGVGYAPDTNY 558
V+ H+ S + +H + K+ + P +
Sbjct: 179 LEKNRLPSVHPH-HSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHP 228
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 41/202 (20%), Positives = 73/202 (36%), Gaps = 48/202 (23%)
Query: 316 YCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
+ +C L+ + + I+ ++S + + + G QEA++ + R+KP++
Sbjct: 43 HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR--HALRLKPDF 100
Query: 373 ITIVGVLFACSHAGFVEDGWNH----FKSMKKFYG----------IDPGR-EHYSCMIDL 417
I DG+ + + G +P S + +L
Sbjct: 101 I----------------DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL 144
Query: 418 LGRAGKLQEAVKLIHEMPYE------PD-AVTWRALLGACKVHRNTDLAICAAKKILNLD 470
L G+L+EA Y P+ AV W L LAI +K + LD
Sbjct: 145 LKALGRLEEAKAC-----YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Query: 471 PQDPGTYILLSNIYANSQKWDE 492
P YI L N+ ++ +D
Sbjct: 200 PNFLDAYINLGNVLKEARIFDR 221
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 58/309 (18%), Positives = 97/309 (31%), Gaps = 59/309 (19%)
Query: 216 IYAKLGELRNAECVFNEM----PTRDLVVWNSIIGGFAQNSDVDEALNLYKR--MKRAGF 269
+ G+ AE ++ P + V + Q +D + + +
Sbjct: 8 REYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66
Query: 270 AADQSTLTSVLRACTGLALLELG-----TQVHVHVLKYDHDLI--LNNALLDMYCKCGSL 322
A S L G E G + + H L+ D I N L G +
Sbjct: 67 AEAYSNL--------GNVYKERGQLQEAIEHYRHALRLKPDFIDGYIN-LAAALVAAGDM 117
Query: 323 EDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL 379
E A+ + +Q S + + L G +EA + K +PN+
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL--KAIETQPNFAV----- 170
Query: 380 FACSHAGFVEDGWNHFKSMKKF------Y----GIDPGR-EHYSCMIDLLGRAGKLQEAV 428
A S+ G V F + + + +DP + Y + ++L A AV
Sbjct: 171 -AWSNLGCV------FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223
Query: 429 ----KLIHEMPYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483
+ + P+ AV L DLAI ++ + L P P Y L+N
Sbjct: 224 AAYLRALS---LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280
Query: 484 YANSQKWDE 492
E
Sbjct: 281 LKEKGSVAE 289
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 4e-04
Identities = 38/214 (17%), Positives = 68/214 (31%), Gaps = 41/214 (19%)
Query: 300 LKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEA 356
D + ++ L ++ G LE+A + + + I+ ++WS + G A
Sbjct: 130 YNPDLYCVRSD-LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188
Query: 357 LKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF------Y----GIDP 406
+ FE K + PN++ A + G V K + F Y + P
Sbjct: 189 IHHFE--KAVTLDPNFLD------AYINLGNV------LKEARIFDRAVAAYLRALSLSP 234
Query: 407 GR-EHYSCMIDLLGRAGKLQEAVKLIHEMPYE------PD-AVTWRALLGACKVHRNTDL 458
+ + + G + A+ Y P + L A K +
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDT-----YRRAIELQPHFPDAYCNLANALKEKGSVAE 289
Query: 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
A L L P + L+NI +E
Sbjct: 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 23/184 (12%), Positives = 55/184 (29%), Gaps = 21/184 (11%)
Query: 316 YCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY 372
+ G + A+S ++ + + + + Q G A + + +
Sbjct: 417 FAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ--SSYALFQYD 474
Query: 373 ITI---VGVLFACSHAGFVEDGWNHF-KSMKKFYGIDPGREHYSCMIDLLGRA----GKL 424
+ +GV + ++ NHF ++ + ++ LG A
Sbjct: 475 PLLLNELGV--VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532
Query: 425 QEAV----KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480
A+ + + + + A+ + LAI + L + P + LL
Sbjct: 533 DAAIDALNQGLLLSTNDANV--HTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590
Query: 481 SNIY 484
Sbjct: 591 KRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 23/187 (12%), Positives = 51/187 (27%), Gaps = 15/187 (8%)
Query: 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMIS-GLAQNGYSQEALKLFESMKVSRIKPNYIT 374
Y + + A + + D + + E L + S
Sbjct: 210 YTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269
Query: 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH----YSCMIDLLGRAGKLQEAV-- 428
+ L+ + + + + + G E C D L + + +
Sbjct: 270 FLRSLYMLKLNKTSHE--DELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAI 327
Query: 429 --KLIHEMPYEPDAVTWRALLGACKVH-RNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485
K++ PY D L A + + +++ P+ T++ + Y
Sbjct: 328 TTKILEIDPYNLDVYP---LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL 384
Query: 486 NSQKWDE 492
K E
Sbjct: 385 CVNKISE 391
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 31/245 (12%), Positives = 65/245 (26%), Gaps = 20/245 (8%)
Query: 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDM 315
+ RA + L + AC LA V + + L L +
Sbjct: 125 QVYCCTGDYARAKCLLTKEDLYNRSSACRYLAA-----FCLVKLYDWQGALNLLG---ET 176
Query: 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA--QNGYSQEALKLFESMKVSRIKPNYI 373
++A + + + + + G A + ++ + +
Sbjct: 177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYK--EALMVDAKCY 234
Query: 374 TIVGVLFACSHAGFVEDG-WNHFKSMKKFYGIDPG--REHYSCMIDLLGRAGKLQEAV-- 428
L + E+ + + D R Y ++ +L+ A
Sbjct: 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294
Query: 429 -KLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487
I+ + D V + KIL +DP + Y L S
Sbjct: 295 LSSINGLEKSSDL--LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES 352
Query: 488 QKWDE 492
+ ++
Sbjct: 353 GEKNK 357
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 41/316 (12%), Positives = 91/316 (28%), Gaps = 57/316 (18%)
Query: 211 SALIDIYAKLGELRNAECVFNEMPT--RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA- 267
++ + ELR AE + + + + S + L + ++
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID 335
Query: 268 -GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDM----------- 315
+L E G + + +++N L+D
Sbjct: 336 PYNLDVYPLH--------LASLHESG--------EKNKLYLISNDLVDRHPEKAVTWLAV 379
Query: 316 ---YCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369
Y + +A FS+ + +W A G +A+ + +R+
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT--TAARLF 437
Query: 370 PNYITI---VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH-YSCMIDLLGRAGKLQ 425
+G+ G + + + Y + + + + +Q
Sbjct: 438 QGTHLPYLFLGM--QHMQLGNILLANEYLQ---SSYALFQYDPLLLNELGVVAFNKSDMQ 492
Query: 426 EAVKL---------IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476
A+ + +P A TW L A + + D AI A + L L D
Sbjct: 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552
Query: 477 YILLSNIYANSQKWDE 492
+ ++ +Y + +
Sbjct: 553 HTAIALVYLHKKIPGL 568
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-05
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 417 LLGRAGKLQEAVKL----IHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472
+ + L EA + P +A WR+L + LAI A LDP+
Sbjct: 26 SMLKLANLAEAALAFEAVCQKEPEREEA--WRSLGLTQAENEKDGLAIIALNHARMLDPK 83
Query: 473 DPGTYILLSNIYANSQKWDE 492
D + L+ + N +
Sbjct: 84 DIAVHAALAVSHTNEHNANA 103
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 4e-05
Identities = 13/104 (12%), Positives = 30/104 (28%), Gaps = 11/104 (10%)
Query: 396 KSMKKFYGIDPGREHYSCMIDL---LGRAGKLQEAV----KLIHEMPYEPDAVTWRALLG 448
++ G+ + + L +AGK +A L Y+ + L
Sbjct: 5 GTLAMLRGLSE--DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARY--FLGLGA 60
Query: 449 ACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
+ + A+ + +D +P + + D
Sbjct: 61 CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDG 104
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 29/270 (10%), Positives = 63/270 (23%), Gaps = 26/270 (9%)
Query: 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVH 296
+V S GG V L + + A + V A L V
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQ------AHGLTPQQVVAIASHDGGKQALE-TVQ 123
Query: 297 VHVLKYDHDLILN-------NALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISG 346
+ L + +++ + V + + V++ ++ G
Sbjct: 124 RLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGG 183
Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVL-FACSHAGFVEDGWNHFKSMKKFYGID 405
Q L + + + P + + V+ + +G+
Sbjct: 184 KQALETVQRLLPVLC--QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC---QAHGLT 238
Query: 406 PGR-EHYSCMIDLLGRAGKLQEAVK-LIHEMPYEPD-AVTWRALLGACKVHRNTDLAICA 462
P + + +Q + L P V + G + +
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPV 298
Query: 463 AKKILNLDPQDPGTYILLSNIYANSQKWDE 492
+ L PQ +
Sbjct: 299 LCQAHGLTPQQVVAIASNGGGKQALETVQR 328
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 20/150 (13%), Positives = 48/150 (32%), Gaps = 23/150 (15%)
Query: 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406
+ G + +A+ F + + + + ++ ++ K I
Sbjct: 14 AIEAGQNGQAVSYFR--QTIALNIDRTEM-----------------YYWTNVDKNSEISS 54
Query: 407 GREHYSCMIDLLGRAGKLQEAVKLIHE-MPYEPDAVTWRALLGACKVHR-NTDLAICAAK 464
+ + + + +A E + P+ V +V R A+ +
Sbjct: 55 --KLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE 112
Query: 465 KILNLDPQDPGTYILLSNIYANSQKWDEVA 494
KIL L+ + I L N Y + + ++
Sbjct: 113 KILQLEADNLAANIFLGNYYYLTAEQEKKK 142
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 29/216 (13%), Positives = 63/216 (29%), Gaps = 36/216 (16%)
Query: 309 NNALLDMYCKCGSLEDAMSVFSRMIQKD------VISWSTMISGLAQNGYSQEALKLFES 362
+ C E A F + ++K + L SQ A+
Sbjct: 141 EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR- 199
Query: 363 MKVSRIKPN----YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREH-YSCMIDL 417
+ R+ P+ + + L G E K +++ PG
Sbjct: 200 -QAIRLNPDNQYLKVLLALKLHKMREEGEEEG--EGEKLVEEALEKAPGVTDVLRSAAKF 256
Query: 418 LGRAGKLQEAVKL----IHEMPYEPDA-----------------VTWRALLGACKVHRNT 456
R + +A++L + +P + + G K+
Sbjct: 257 YRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELI 316
Query: 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
A+ KK + +L++++A + +++E
Sbjct: 317 GHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 6e-04
Identities = 30/247 (12%), Positives = 65/247 (26%), Gaps = 56/247 (22%)
Query: 300 LKYDHDLILNN---ALLDMYCKCGSLEDAMSVFSRMIQKD---VISWSTMISGLAQNGYS 353
L D+ + L M + + + ++K + +
Sbjct: 204 LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEP 263
Query: 354 QEALKLFESMKVSRIKPNYITI---VGVLFACSHAGFVEDGWNHF--------------K 396
+A++L + K PN + +G + + N
Sbjct: 264 DKAIELLK--KALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVA 321
Query: 397 SMKKFYGIDPGREH-YSCMIDLLGRAGKLQEAV----KLIHEMPYEPDAVTWRALLGACK 451
+KK + S + L A + +EA K + G +
Sbjct: 322 HLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381
Query: 452 VH--RNTDLAICA------------------------AKKILNLDPQDPGTYILLSNIYA 485
++ + D AI AK L+ + D +L+ +
Sbjct: 382 LYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQE 441
Query: 486 NSQKWDE 492
++K +
Sbjct: 442 LNEKMQQ 448
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 15/112 (13%), Positives = 26/112 (23%), Gaps = 11/112 (9%)
Query: 388 VEDGWNHFKSMKKFYGIDPGREHYSCMIDL---LGRAGKLQEAV----KLIHEMPYEPDA 440
V D N ++K I + + G+++EA L Y D
Sbjct: 15 VIDAINSGATLKDINAIPD--DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY 72
Query: 441 VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
L ++ A L D + +
Sbjct: 73 --IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLK 122
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 36/311 (11%), Positives = 89/311 (28%), Gaps = 39/311 (12%)
Query: 322 LEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI--V 376
+A + S+ ++ + V +W+ + + G A F N +++ +
Sbjct: 119 SPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS--GALTHCKNKVSLQNL 176
Query: 377 GVLFACSHAGFVEDGWNHF----KSMKKFYGIDP---------GREHYSCMIDLLGRAGK 423
++ ++ H + K +D G + S +
Sbjct: 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI 236
Query: 424 LQE-------AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476
Q+ A K+ + PD K + A+ + LDP P
Sbjct: 237 SQQALSAYAQAEKVDRKASSNPDL--HLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294
Query: 477 YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKI 536
+ + + E + + + + S + + H D +
Sbjct: 295 QQREQQLLEFLSRLTSLLESKGKTKPKKLQ-----SMLGSLRPAHLGPCGDGRYQSASGQ 349
Query: 537 NKHLKHLIQKLVGVGYAPDTNYVLQDLEGEQKEDSIQYH-----SEKLAIVFGLMSLTQG 591
L+ + G T + + + E+ + + S+ + ++ Q
Sbjct: 350 KMTLELKPLSTLQPGVNSGTVVLGKVVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNVVQS 409
Query: 592 KTIRIRKNLRI 602
+ I ++ I
Sbjct: 410 WGVLIGDSVAI 420
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 23/180 (12%), Positives = 43/180 (23%), Gaps = 31/180 (17%)
Query: 320 GSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIV 376
A+ + KD+ + + + AL +P Y
Sbjct: 69 EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR--AWLLSQPQY---- 122
Query: 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL----IH 432
E + D + + +E L +
Sbjct: 123 ------------EQLGSVNLQADV----DIDDLNVQSEDFFFAAPNEYRECRTLLHAALE 166
Query: 433 EMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492
P + +L + N D A ++ + L P D + L AN + E
Sbjct: 167 MNPNDAQL--HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 643 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.6 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.59 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.53 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.48 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.45 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.45 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.45 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.45 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.45 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.45 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.43 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.41 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.39 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.38 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.38 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.34 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.33 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.29 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.27 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.26 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.26 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.24 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.17 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.16 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.15 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.12 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.11 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.07 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.04 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.01 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.0 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.99 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.95 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.94 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.93 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.93 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.92 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.91 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.9 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.89 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.88 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.85 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.84 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.76 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.73 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.7 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.69 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.69 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.68 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.68 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.66 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.62 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.62 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.61 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.61 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.6 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.59 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.59 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.58 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.58 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.57 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.57 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.56 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.55 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.55 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.54 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.54 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.51 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.51 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.49 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.48 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.42 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.42 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.41 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.4 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.36 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.36 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.36 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.32 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.31 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.3 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.3 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.3 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.29 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.29 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.29 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.29 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.28 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.28 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.26 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.25 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.25 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.19 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.19 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.18 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.17 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.17 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.17 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.17 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.16 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.15 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.15 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.13 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.11 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.1 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.08 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.08 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.07 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.05 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.04 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.04 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.03 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.01 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.01 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.01 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.0 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.0 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.98 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.96 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.95 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.9 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.9 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.88 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.87 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.85 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.85 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.84 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.83 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.79 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.77 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.76 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.76 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.75 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.75 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.7 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.67 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.59 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.58 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.58 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.45 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.44 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.43 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.41 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.37 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.23 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.19 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.1 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.08 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.07 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.05 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.0 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.89 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.84 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.77 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.74 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.71 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.7 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.55 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.44 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.41 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.84 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.74 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.51 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.49 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.45 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.06 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.03 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.72 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.36 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.22 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.37 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.3 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.17 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.82 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.84 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 91.34 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.67 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.48 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 89.71 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.26 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.57 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.03 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.75 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.3 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.27 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.64 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.32 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.79 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 85.27 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.48 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.1 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.67 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.66 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.62 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 81.87 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 81.59 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.47 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=372.83 Aligned_cols=461 Identities=11% Similarity=-0.023 Sum_probs=402.3
Q ss_pred CCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHH
Q 045672 34 TITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVN 113 (643)
Q Consensus 34 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 113 (643)
+|.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+|+.+... +++..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 154 (597)
T 2xpi_A 79 DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRY 154 (597)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHH
Confidence 4557888999999999999999999999999985 3678899999999999999999999999988653 67889999
Q ss_pred HHHHHHHcCCChhHHHHHHccCCCC-------------------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 045672 114 ILLNMHVKFSLLEEAQVLFDQMPER-------------------NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPN 174 (643)
Q Consensus 114 ~li~~~~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 174 (643)
.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++|+++|++|.+. .|+
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~ 232 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV--DAK 232 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Cch
Confidence 9999999999999999999965433 4789999999999999999999999999976 354
Q ss_pred hh-hHHHHHHHHhchhhHH--HH----HHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCcchHHHHH
Q 045672 175 MF-TYSAVLRACDSLIILR--QL----HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT--RDLVVWNSII 245 (643)
Q Consensus 175 ~~-t~~~ll~a~~~~~~~~--~~----~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li 245 (643)
.. .+..+...+...+... .+ +..+...+..+...+++.++.+|.+.|++++|.++|+++.+ ++..+|+.++
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 312 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKA 312 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHH
Confidence 33 3333333332222222 11 33334444555666788889999999999999999999988 7899999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHH
Q 045672 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLED 324 (643)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~ 324 (643)
.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|+.++|..++..+.+ .+.+..+++.++.+|.++|++++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999875 34778899999999999999999999999998 77788999999999999999999
Q ss_pred HHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 045672 325 AMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401 (643)
Q Consensus 325 A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 401 (643)
|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+|.+.|++++|.++|+.+.+.
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999884 3468899999999999999999999999999864 457889999999999999999999999999874
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 402 YGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-------PYEPD--AVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 402 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
.+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|+..++++++.+|+
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 471 --FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred --CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 3457889999999999999999999999988 45787 789999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 473 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998743
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=323.96 Aligned_cols=445 Identities=11% Similarity=0.025 Sum_probs=376.3
Q ss_pred CCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc------------
Q 045672 36 TRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSG------------ 103 (643)
Q Consensus 36 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------ 103 (643)
.||..+|+.++..|.+.|++++|+.+|+++... +++..+++.++.++.+.|++++|..+|+.+...
T Consensus 114 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 191 (597)
T 2xpi_A 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLM 191 (597)
T ss_dssp HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------C
T ss_pred CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccc
Confidence 357789999999999999999999999998643 678999999999999999999999999853221
Q ss_pred ---CCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCC---CcchHHHHHHHHHhCCChhHHHH--H-HHHHHHCCCCCC
Q 045672 104 ---GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPER---NVVSWTTMISAYCDAKMNDKALE--L-LIFMLREGVRPN 174 (643)
Q Consensus 104 ---g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~ 174 (643)
+.+++..+++.++.+|.+.|++++|.++|++|.+. +...|..+...+...+..+.+.. + +..+...+..+.
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 192 QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 12335789999999999999999999999999763 34455556555544433332221 1 555555555556
Q ss_pred hhhHHHHHHHHhchhhHH---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHH
Q 045672 175 MFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGF 248 (643)
Q Consensus 175 ~~t~~~ll~a~~~~~~~~---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 248 (643)
..+|+.++..+.+.|+.+ .++..+.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|
T Consensus 272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL 349 (597)
T ss_dssp HHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHH
Confidence 667777778888888887 444444333 58899999999999999999999999999853 4778999999999
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHH
Q 045672 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMS 327 (643)
Q Consensus 249 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~ 327 (643)
.+.|++++|.++|+++.+.. +.+..++..+..++.+.|++++|.+++..+.+ .+.+..+++.++.+|.+.|++++|.+
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999998653 55788999999999999999999999999999 66678899999999999999999999
Q ss_pred HHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc--
Q 045672 328 VFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY-- 402 (643)
Q Consensus 328 ~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-- 402 (643)
+|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..+...|.+.|++++|.++|+++.+..
T Consensus 429 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 429 AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 9998843 477899999999999999999999999998864 4468899999999999999999999999998732
Q ss_pred -CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 045672 403 -GIDPG--REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477 (643)
Q Consensus 403 -~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 477 (643)
+..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+++.++
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS 587 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Confidence 55777 789999999999999999999999987 3334 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHc
Q 045672 478 ILLSNIYAN 486 (643)
Q Consensus 478 ~~l~~~~~~ 486 (643)
..++++|..
T Consensus 588 ~~l~~~~~~ 596 (597)
T 2xpi_A 588 DLLKRALEE 596 (597)
T ss_dssp HHHHHTTC-
T ss_pred HHHHHHHhc
Confidence 999988753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-25 Score=231.35 Aligned_cols=371 Identities=13% Similarity=0.129 Sum_probs=255.0
Q ss_pred HHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChh
Q 045672 47 TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLE 126 (643)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 126 (643)
..+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++..++.. +.+..++..+...|.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 44556677777777776666542 3344455555556666677777777766666653 345556666666666666666
Q ss_pred HHHHHHccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCC
Q 045672 127 EAQVLFDQMPE--R-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGF 203 (643)
Q Consensus 127 ~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~ 203 (643)
+|...|+++.+ | +..+|..+...+.+.|++++|++.|+++.+. .|+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------- 133 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPD----------------------------- 133 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTT-----------------------------
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------------------
Confidence 66666665543 2 3345666666666666666666666665532 122
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045672 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280 (643)
Q Consensus 204 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 280 (643)
+..++..+...|...|++++|.+.|+++.+ .+..+|+.+...+.+.|++++|+..|+++.+.
T Consensus 134 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------- 198 (388)
T 1w3b_A 134 --LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------------- 198 (388)
T ss_dssp --CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------------
T ss_pred --cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------
Confidence 122333444455555555555555544432 12344555555555555555555555554442
Q ss_pred HHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHH
Q 045672 281 RACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEAL 357 (643)
Q Consensus 281 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 357 (643)
.+.+...+..+...+...|++++|...|++.. ..+..+|..+...|.+.|++++|+
T Consensus 199 ---------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 257 (388)
T 1w3b_A 199 ---------------------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257 (388)
T ss_dssp ---------------------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 23334455667777778888888888877663 235678888889999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 045672 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY 436 (643)
Q Consensus 358 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 436 (643)
+.|+++.+.. +.+..++..+..++.+.|++++|...|+.+.+. .+.+...+..+...+.+.|++++|.+.++++ ..
T Consensus 258 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 258 DTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999988753 224677888888999999999999999999873 4567888999999999999999999999887 44
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCC
Q 045672 437 EP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489 (643)
Q Consensus 437 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 489 (643)
.| +..+|..+...+...|++++|+..+++++++.|+++.+|..++.++...|+
T Consensus 335 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 45 567899999999999999999999999999999999999999999887664
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-27 Score=245.48 Aligned_cols=182 Identities=14% Similarity=0.197 Sum_probs=168.2
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC---------hhHhHHHHHHHHhh--cCCchh
Q 045672 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA---------LLELGTQVHVHVLK--YDHDLI 307 (643)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~---------~~~~a~~i~~~~~~--~~~~~~ 307 (643)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+ .++.|.++|+.|.+ +.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4678889999999999999999999999999999999999999997654 47889999999988 889999
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 045672 308 LNNALLDMYCKCGSLEDAMSVFSRMI----QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383 (643)
Q Consensus 308 ~~~~Li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 383 (643)
+||+||++|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999994 57999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 045672 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421 (643)
Q Consensus 384 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 421 (643)
+.|++++|.++|++|.+. +..|+..+|+.+++.|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999985 9999999999999988763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-24 Score=222.08 Aligned_cols=325 Identities=14% Similarity=0.051 Sum_probs=227.2
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
+...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|...++.+++.. +.+...+..+..
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 109 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAA 109 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHH
Confidence 45567777788899999999999999988754 5688899999999999999999999999999875 345668999999
Q ss_pred HHHcCCChhHHHHHHccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHH
Q 045672 118 MHVKFSLLEEAQVLFDQMPE--R-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQL 194 (643)
Q Consensus 118 ~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 194 (643)
+|.+.|++++|.+.|+++.+ | +...+..+...+...|++++|++.|+++.+. .|+
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~-------------------- 167 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPN-------------------- 167 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTT--------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC--------------------
Confidence 99999999999999998765 4 4456888889999999999999999999864 222
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 045672 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA 271 (643)
Q Consensus 195 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 271 (643)
+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..... +.
T Consensus 168 -----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 235 (388)
T 1w3b_A 168 -----------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp -----------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 456788999999999999999999998754 356688899999999999999999999888753 22
Q ss_pred CHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHH
Q 045672 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI---QKDVISWSTMISGL 347 (643)
Q Consensus 272 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 347 (643)
+..++..+..++...|++++|...+..+.+ .+.+..++..+...|.+.|++++|...|+++. ..+..+|+.+...+
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 455565555555555555555555555555 22333444444444444455554444444442 12333444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 399 (643)
.+.|++++|++.|+++.+.. +.+..++..+...+.+.|++++|...|+++.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444444321 1123344444444444444444444444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-27 Score=246.23 Aligned_cols=209 Identities=11% Similarity=0.099 Sum_probs=152.5
Q ss_pred hHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccC
Q 045672 57 RAMKAMHAMQCHGVRADS-VTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQM 135 (643)
Q Consensus 57 ~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 135 (643)
.+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 445566777777766554 458889999999999999999999999999999999999999999887754321
Q ss_pred CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH---HHHHHHHHhCCCCchhHHHH
Q 045672 136 PERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSA 212 (643)
Q Consensus 136 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~---~~~~~~~~~g~~~~~~~~~~ 212 (643)
.+.+..++|.++|++|.+.|+.||..||+++|++|++.|+.+ +++..|.+.|+.||..+||+
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 122334566666666666666666666666666666655555 55555666666666777777
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 045672 213 LIDIYAKLGELRNAECVFNEMPT----RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLA 287 (643)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 287 (643)
||.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..++..+
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 88888999999999999998864 7889999999999999999999999999999999999999999888886543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-23 Score=219.19 Aligned_cols=433 Identities=11% Similarity=-0.027 Sum_probs=221.4
Q ss_pred cchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 045672 39 SSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNM 118 (643)
Q Consensus 39 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 118 (643)
...|...-..+.+.|++++|+..|+++.+.. |+..++..+..++...|++++|...++.+++.++ .+...+..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 3456677788889999999999999998764 6888999999999999999999999999988753 466788888899
Q ss_pred HHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh---chhhHH
Q 045672 119 HVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACD---SLIILR 192 (643)
Q Consensus 119 ~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~---~~~~~~ 192 (643)
|.+.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-..... ......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 9999999999988887654 2334444445444443333333333333332222222221111000000 000000
Q ss_pred HHHHHHHHhCC---------CCchhHHHHHHHHHHH---cCCHHHHHHHHhhCCC----------------C-CcchHHH
Q 045672 193 QLHCGIIKVGF---------ESDVFVRSALIDIYAK---LGELRNAECVFNEMPT----------------R-DLVVWNS 243 (643)
Q Consensus 193 ~~~~~~~~~g~---------~~~~~~~~~li~~y~~---~g~~~~A~~~f~~~~~----------------~-~~~~~~~ 243 (643)
.+...+..... +.+...+..+...+.. .|++++|...|+++.+ + +..+|..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 00000000000 0112222223332332 5555555555554332 1 1234555
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCH
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSL 322 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~ 322 (643)
+...+...|++++|+..|+++.+.. |+...+..+..++...|+++.|...+..+.+ .+.+..++..+...|...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 5555555566666666555555543 2244455555555555555555555555555 333444555555555555555
Q ss_pred HHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 045672 323 EDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMK 399 (643)
Q Consensus 323 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 399 (643)
++|...|++.. ..+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555442 1233445555555555555555555555554431 1223444445555555555555555555544
Q ss_pred HhcCCCCC----hHHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 045672 400 KFYGIDPG----REHYSCMIDLLGR---AGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLD 470 (643)
Q Consensus 400 ~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 470 (643)
+...-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 32111111 2244555555555 55555555555444 1112 33444445555555555555555555555555
Q ss_pred CCCcchH
Q 045672 471 PQDPGTY 477 (643)
Q Consensus 471 p~~~~~~ 477 (643)
|+++..+
T Consensus 480 ~~~~~~~ 486 (514)
T 2gw1_A 480 RTMEEKL 486 (514)
T ss_dssp SSHHHHH
T ss_pred cccHHHH
Confidence 5544333
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-22 Score=214.83 Aligned_cols=425 Identities=11% Similarity=-0.047 Sum_probs=320.8
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHH
Q 045672 74 SVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAY 150 (643)
Q Consensus 74 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 150 (643)
...+......+.+.|++++|...|+.+++.+ |+..++..+..+|.+.|++++|...|+++.+ .+..+|..+..+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3456777888899999999999999999976 6889999999999999999999999998764 3567899999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH---HHHHHHHHhCCCCchhHHHHH---HHHHHHcCCHH
Q 045672 151 CDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR---QLHCGIIKVGFESDVFVRSAL---IDIYAKLGELR 224 (643)
Q Consensus 151 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~---~~~~~~~~~g~~~~~~~~~~l---i~~y~~~g~~~ 224 (643)
.+.|++++|+..|+++...+ +++......++..+....... .....+...+..|+......- ...........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999999876 344444444444433322222 111111111111111100000 00011111111
Q ss_pred HHHHHHhhCCC---------C-CcchHHHHHHHHHh---CCChhHHHHHHHHHHH-----cCCC--------CCHHHHHH
Q 045672 225 NAECVFNEMPT---------R-DLVVWNSIIGGFAQ---NSDVDEALNLYKRMKR-----AGFA--------ADQSTLTS 278 (643)
Q Consensus 225 ~A~~~f~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~t~~~ 278 (643)
.+...+..... + +...+......+.. .|++++|+.+|+++.+ .... .+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 12222222211 1 23445555555554 8999999999999987 3112 23456777
Q ss_pred HHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHH
Q 045672 279 VLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQE 355 (643)
Q Consensus 279 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 355 (643)
+...+...|+++.|...+..+.+..|+..++..+...|...|++++|...|+++.. .+...|..+...|...|++++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 88889999999999999999999444488889999999999999999999998754 356789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 045672 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM- 434 (643)
Q Consensus 356 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 434 (643)
|+..|+++.... +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998853 335678888999999999999999999999874 3446778999999999999999999999887
Q ss_pred ---CCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 435 ---PYEPD----AVTWRALLGACKV---HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 435 ---~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+..++ ...|..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 22233 4488889999999 9999999999999999999999999999999999999999999999998743
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-21 Score=211.57 Aligned_cols=423 Identities=12% Similarity=0.037 Sum_probs=294.7
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
....|..+-..+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+++.++ .+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 34568888899999999999999999998765 55788999999999999999999999999999863 56788899999
Q ss_pred HHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCChhhHHHHHHHHhchhhH
Q 045672 118 MHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLRE------GVRPNMFTYSAVLRACDSLIIL 191 (643)
Q Consensus 118 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~ 191 (643)
+|...|++++|...|+.+ ..+....+..+..+...+...+|+..++++... ...|+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~--------------- 165 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT--------------- 165 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH---------------
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh---------------
Confidence 999999999999999744 333333344455666666778899999988643 1222222
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcc---hHHHHHHHHHhC--------CChhHHHHH
Q 045672 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLV---VWNSIIGGFAQN--------SDVDEALNL 260 (643)
Q Consensus 192 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~ 260 (643)
.+..|....+.+.+...+......+.. .+..+...+... |++++|+.+
T Consensus 166 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~ 224 (537)
T 3fp2_A 166 ---------------------SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDM 224 (537)
T ss_dssp ---------------------HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 223344455555555555555544332 233333332222 356777777
Q ss_pred HHHHHHcCCCCC--------HHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhc
Q 045672 261 YKRMKRAGFAAD--------QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRM 332 (643)
Q Consensus 261 ~~~m~~~g~~p~--------~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m 332 (643)
|+++.+. .|+ ..++..+...+...|+++.|...+..+.+..|+...+..+...|...|++++|...|+++
T Consensus 225 ~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 302 (537)
T 3fp2_A 225 YHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKA 302 (537)
T ss_dssp HHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHH
T ss_pred HHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7776654 232 123444455566667777777777777774455666777777777788888888877776
Q ss_pred CC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH
Q 045672 333 IQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGRE 409 (643)
Q Consensus 333 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 409 (643)
.+ .+..+|..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|...++.+.+. .+.+..
T Consensus 303 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 379 (537)
T 3fp2_A 303 VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPE 379 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTH
T ss_pred hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChH
Confidence 32 356677778888888888888888888877643 223566777777888888888888888888763 234566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----CCC----CCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCC
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM----PYE----PDAVTWRALLGACKVH----------RNTDLAICAAKKILNLDP 471 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~----p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p 471 (643)
.+..+...|.+.|++++|.+.++++ +.. .....+..+...+... |++++|+..++++++..|
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 7778888888888888888888775 111 1222344444556666 888999999999998888
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 472 QDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 472 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 888888899999999999999999988887643
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-21 Score=201.13 Aligned_cols=305 Identities=13% Similarity=0.081 Sum_probs=239.7
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 045672 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA 218 (643)
Q Consensus 139 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~ 218 (643)
+...|..+...+.+.|++++|+.+|+++.+. .|+ +..++..+...|.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~-------------------------------~~~~~~~l~~~~~ 71 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPD-------------------------------NYIAYYRRATVFL 71 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCc-------------------------------cHHHHHHHHHHHH
Confidence 4556777777777788888888888777653 221 3344455667777
Q ss_pred HcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHH------------
Q 045672 219 KLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ----STLTSV------------ 279 (643)
Q Consensus 219 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------ 279 (643)
..|++++|...|+++.+ .+..+|..+...|.+.|++++|.+.|+++.+. .|+. ..+..+
T Consensus 72 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (450)
T 2y4t_A 72 AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQ 149 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 77778888777776643 34567777788888888888888888877764 3432 333333
Q ss_pred HHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHH
Q 045672 280 LRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQE 355 (643)
Q Consensus 280 l~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 355 (643)
...+...|+++.|...+..+.+ .+.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3346778888888888888888 666778889999999999999999999998843 467899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHH------------HHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHH
Q 045672 356 ALKLFESMKVSRIKPNYI-TIVGV------------LFACSHAGFVEDGWNHFKSMKKFYGIDPG-----REHYSCMIDL 417 (643)
Q Consensus 356 A~~l~~~m~~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~ 417 (643)
|+..|+++... .|+.. .+..+ ...|.+.|++++|...|+.+.+. .|+ ..++..+..+
T Consensus 230 A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 230 SLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHH
Confidence 99999999874 45533 33333 78889999999999999999874 344 4578999999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 045672 418 LGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 483 (643)
+.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+++.++..++.+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 99999999999999987 3344 678999999999999999999999999999999999999999844
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.4e-21 Score=199.72 Aligned_cols=363 Identities=12% Similarity=0.024 Sum_probs=225.8
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHH
Q 045672 73 DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISA 149 (643)
Q Consensus 73 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 149 (643)
+...+..+...+.+.|++++|..+|+.+++.. +.+..++..+..+|...|++++|...|+++.+ .+..+|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 44555555556666666666666666655543 23445555555555555555555555555433 234455555555
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCch---hHHHHHHHHHHHcCCHHHH
Q 045672 150 YCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDV---FVRSALIDIYAKLGELRNA 226 (643)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~---~~~~~li~~y~~~g~~~~A 226 (643)
|.+.|++++|++.|+++.+. .|+ +. ..+..+...+...
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~-------------------------------~~~~~~~~~~l~~~~~~~------ 144 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPS-------------------------------ENEEKEAQSQLIKSDEMQ------ 144 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCC-------------------------------HHHHHHHHHHHHHHHHHH------
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCC-------------------------------ChhhHHHHHHHHHHHHHH------
Confidence 55555555555555555432 111 11 3333332221110
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCc
Q 045672 227 ECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHD 305 (643)
Q Consensus 227 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~ 305 (643)
.+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++.|...+..+.+ .+.+
T Consensus 145 -------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 210 (450)
T 2y4t_A 145 -------------RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210 (450)
T ss_dssp -------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC
T ss_pred -------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 11122334666777777777777776643 33566677777777777777777777777777 5566
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQ--K-DVISWSTM------------ISGLAQNGYSQEALKLFESMKVSRIKP 370 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p 370 (643)
..++..+...|.+.|++++|...|+++.. | +...+..+ ...+.+.|++++|+..|+++... .|
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p 288 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EP 288 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 67777778888888888888888777632 2 33344444 77788888888888888888774 45
Q ss_pred C-----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHH
Q 045672 371 N-----YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTW 443 (643)
Q Consensus 371 ~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~ 443 (643)
+ ...+..+...+.+.|++++|...++.+.+. .+.+...|..+..+|...|++++|.+.++++ ...|+ ...+
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 366 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR 366 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHH
Confidence 5 346677778888888888888888888763 2346778888888888888888888888877 45554 4455
Q ss_pred HHHHHH------------HHHcC-----CHHHHHHHHHH-HHhcCCCCcc----------hHHHHHHHHHccCChhHH
Q 045672 444 RALLGA------------CKVHR-----NTDLAICAAKK-ILNLDPQDPG----------TYILLSNIYANSQKWDEV 493 (643)
Q Consensus 444 ~~ll~~------------~~~~g-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~a 493 (643)
..+..+ |...| +.+++.+.+++ .++..|++.. .+..+..+|...|+.+.+
T Consensus 367 ~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 367 EGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 544422 33333 56777888886 6777776421 445566666666555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-17 Score=169.88 Aligned_cols=294 Identities=13% Similarity=0.083 Sum_probs=246.0
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045672 206 DVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282 (643)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 282 (643)
|+..+..+...|...|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 445667788899999999999999998754 356789999999999999999999999998863 3366788888999
Q ss_pred HhcCChhHhHHHHHHHHhhcCC----chhHHhHH------------HHHHHhcCCHHHHHHHHhhcC---CCChhhHHHH
Q 045672 283 CTGLALLELGTQVHVHVLKYDH----DLILNNAL------------LDMYCKCGSLEDAMSVFSRMI---QKDVISWSTM 343 (643)
Q Consensus 283 ~~~~~~~~~a~~i~~~~~~~~~----~~~~~~~L------------i~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~l 343 (643)
+...|+++.|...+..+.+..| +...+..+ ...+...|++++|...|+++. ..+...|..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999999444 55555555 588999999999999999874 3467789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH-----------
Q 045672 344 ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS----------- 412 (643)
Q Consensus 344 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----------- 412 (643)
...+...|++++|+..++++.... +.+..++..+...+...|++++|...|+...+. .+.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHH
Confidence 999999999999999999998753 445788889999999999999999999999874 222333332
Q ss_pred -HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 413 -CMIDLLGRAGKLQEAVKLIHEM-PYEPD-A----VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 413 -~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
.+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|+..++++++..|+++.++..++.+|.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3367799999999999999887 22343 2 234456778999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHhC
Q 045672 486 NSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 486 ~~g~~~~a~~~~~~m~~~ 503 (643)
..|++++|.+.+++..+.
T Consensus 318 ~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 999999999999999864
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-18 Score=183.68 Aligned_cols=407 Identities=10% Similarity=-0.002 Sum_probs=299.6
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
+..+|..+...|.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|...++ .+... |+. .+..+.
T Consensus 58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~ 131 (537)
T 3fp2_A 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSLN--GDF--DGASIE 131 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcC--CCC--ChHHHH
Confidence 56789999999999999999999999998765 4578889999999999999999999996 44432 222 122344
Q ss_pred HHHcCCChhHHHHHHccCCCC------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhH
Q 045672 118 MHVKFSLLEEAQVLFDQMPER------NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191 (643)
Q Consensus 118 ~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 191 (643)
.+...+....|...++++... ........+..+....+.+.++..+.+... ..+....+...+......
T Consensus 132 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~--- 206 (537)
T 3fp2_A 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSA--- 206 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHh---
Confidence 455556667888888887652 223345556667777777776655544321 112111111111110000
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC----------cchHHHHHHHHHhCCChhHHHHHH
Q 045672 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRD----------LVVWNSIIGGFAQNSDVDEALNLY 261 (643)
Q Consensus 192 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~ 261 (643)
+ .-......|++++|..+|+++.+.+ ..+|..+...+...|++++|+..|
T Consensus 207 --------------~------~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 207 --------------T------DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp --------------S------HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------h------hhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 0 0111222467888999988876532 225667778889999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CCh
Q 045672 262 KRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDV 337 (643)
Q Consensus 262 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~ 337 (643)
++..+. .|+...+..+...+...|+++.|...+..+.+ .+.+..++..+...|...|++++|...|++..+ .+.
T Consensus 267 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 344 (537)
T 3fp2_A 267 QESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344 (537)
T ss_dssp HHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred HHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Confidence 999885 46678888899999999999999999999999 666788999999999999999999999998843 356
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----ChHHHHH
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP----GREHYSC 413 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~ 413 (643)
..|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+..
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 789999999999999999999999998863 34467888889999999999999999999876421111 1223455
Q ss_pred HHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHH
Q 045672 414 MIDLLGRA----------GKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478 (643)
Q Consensus 414 li~~~~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 478 (643)
+...|.+. |++++|.+.|+++ ...| +...|..+...+...|++++|...+++++++.|+++....
T Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 56778888 9999999999987 3234 5678999999999999999999999999999998765543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-17 Score=167.90 Aligned_cols=308 Identities=13% Similarity=0.072 Sum_probs=246.0
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 045672 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA 218 (643)
Q Consensus 139 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~ 218 (643)
|+..|..+...+...|++++|+..|+++.+. .|+ +..++..+...|.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~-------------------------------~~~~~~~~a~~~~ 48 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPD-------------------------------NYIAYYRRATVFL 48 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------------------------------CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccc-------------------------------cHHHHHHHHHHHH
Confidence 3456777888888999999999999988764 232 2334555777888
Q ss_pred HcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC----CHHHHHHH------------
Q 045672 219 KLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA----DQSTLTSV------------ 279 (643)
Q Consensus 219 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~l------------ 279 (643)
..|++++|...|++..+ .+...|..+...+...|++++|+..|++..+. .| +...+..+
T Consensus 49 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 126 (359)
T 3ieg_A 49 AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQ 126 (359)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHH
Confidence 88899999888887653 35677888888888999999999999888775 34 23333333
Q ss_pred HHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHH
Q 045672 280 LRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQE 355 (643)
Q Consensus 280 l~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 355 (643)
...+...|+++.|...+..+.+ .+.+..++..+...|...|++++|...|+++.+ .+...|..+...+...|++++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4677889999999999999998 667788889999999999999999999998743 367789999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHH------------HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-h----HHHHHHHHH
Q 045672 356 ALKLFESMKVSRIKPN-YITIV------------GVLFACSHAGFVEDGWNHFKSMKKFYGIDPG-R----EHYSCMIDL 417 (643)
Q Consensus 356 A~~l~~~m~~~g~~p~-~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~li~~ 417 (643)
|+..|++..+. .|+ ...+. .+...+...|++++|...++.+.+. .|+ . ..+..+...
T Consensus 207 A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 207 SLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHH
Confidence 99999999875 344 33222 2356688999999999999999874 233 2 235567889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHc
Q 045672 418 LGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 486 (643)
|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++.++..+..++..
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999999999999887 3334 677899999999999999999999999999999999888888777654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-17 Score=164.10 Aligned_cols=285 Identities=11% Similarity=-0.022 Sum_probs=223.6
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045672 204 ESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVL 280 (643)
Q Consensus 204 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 280 (643)
..+..+...+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 44556667788888888999999999988754 345667778888888999999999999988753 33566777788
Q ss_pred HHHhcCC-hhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHH
Q 045672 281 RACTGLA-LLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQE 355 (643)
Q Consensus 281 ~a~~~~~-~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 355 (643)
..+...| +++.|...+..+.+ .+.+...+..+...|...|++++|...|++..+ .+...|..+...|...|++++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 8888888 88999999988888 555677888888899999999999998888743 345677778888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-------CCCChHHHHHHHHHHHhcCCHHHHH
Q 045672 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYG-------IDPGREHYSCMIDLLGRAGKLQEAV 428 (643)
Q Consensus 356 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~ 428 (643)
|++.|++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999887753 33467778888888889999999998888876321 1334568888888888999999999
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HccCCh
Q 045672 429 KLIHEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY-ANSQKW 490 (643)
Q Consensus 429 ~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 490 (643)
+.+++. ... .+...|..+...+...|++++|...++++++++|+++.++..++.++ ...|+.
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 888876 222 35667888888888889999999999999988898888888888888 455554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.6e-16 Score=165.43 Aligned_cols=393 Identities=10% Similarity=0.058 Sum_probs=262.6
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC--CCcchHHHHHHHH
Q 045672 73 DSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAY 150 (643)
Q Consensus 73 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~ 150 (643)
|...|..++.. .+.|++++|+.+++.+++.. +.+...|..++..+.+.|++++|..+|++..+ |++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 56667666663 55677777777777777653 34556677777777777777777777777655 5555666655422
Q ss_pred -HhCCChhHHHH----HHHHHHHC-CCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHH------
Q 045672 151 -CDAKMNDKALE----LLIFMLRE-GVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA------ 218 (643)
Q Consensus 151 -~~~g~~~~A~~----~~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~------ 218 (643)
...|+.++|.+ +|++.... |..|+. ..+|...+....
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~-------------------------------~~~w~~~~~~~~~~~~~~ 138 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMS-------------------------------YQIWVDYINFLKGVEAVG 138 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTC-------------------------------HHHHHHHHHHHHHSCCCS
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCccc-------------------------------HHHHHHHHHHHhcCCCcc
Confidence 34566666554 55555432 433322 122222222222
Q ss_pred ---HcCCHHHHHHHHhhCCC-CCc---chHHHHHHHH-------------HhCCChhHHHHHHHHHH------HcC---C
Q 045672 219 ---KLGELRNAECVFNEMPT-RDL---VVWNSIIGGF-------------AQNSDVDEALNLYKRMK------RAG---F 269 (643)
Q Consensus 219 ---~~g~~~~A~~~f~~~~~-~~~---~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~ 269 (643)
+.|+++.|..+|++... |+. ..|....... ...+++++|..++.++. +.. +
T Consensus 139 ~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 139 SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 25667777777766543 211 1232211110 12345677777766532 111 2
Q ss_pred CCCH--------HHHHHHHHHHhc----CChh----HhHHHHHHHHhh-cCCchhHHhHHHHHHHh-------cCCHH--
Q 045672 270 AADQ--------STLTSVLRACTG----LALL----ELGTQVHVHVLK-YDHDLILNNALLDMYCK-------CGSLE-- 323 (643)
Q Consensus 270 ~p~~--------~t~~~ll~a~~~----~~~~----~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~-------~g~~~-- 323 (643)
+|+. ..|...+..... .++. +.+..+++.+++ .+.+..+|..++..+.+ .|+++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a 298 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhh
Confidence 3431 233333332221 1222 366678888888 77778889888888876 79877
Q ss_pred -----HHHHHHhhcCC---C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHH
Q 045672 324 -----DAMSVFSRMIQ---K-DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY--ITIVGVLFACSHAGFVEDGW 392 (643)
Q Consensus 324 -----~A~~~~~~m~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~ 392 (643)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|.
T Consensus 299 ~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHH
Confidence 89999998764 3 5778999999999999999999999999984 5653 47888888888899999999
Q ss_pred HHHHHhHHhcCCCC-ChHHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 393 NHFKSMKKFYGIDP-GREHYSCMIDL-LGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 393 ~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
.+|+...+. .| +...|...+.. +...|+.++|.++|++. ...| +...|..++..+...|+.+.|..+|++++.
T Consensus 377 ~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 377 MIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 999999863 33 33334333322 34689999999999876 2234 577899999999999999999999999999
Q ss_pred cCCCCcc----hHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 469 LDPQDPG----TYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 469 ~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
..|.++. .|...+......|+.+.+..+.+++.+.
T Consensus 454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8776655 7777788888899999999999988753
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-16 Score=159.96 Aligned_cols=263 Identities=13% Similarity=0.056 Sum_probs=228.9
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHH
Q 045672 236 RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLD 314 (643)
Q Consensus 236 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~ 314 (643)
.++..+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|+++.|...+..+.+ .+.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 466778888999999999999999999998864 33455666777888899999999999999999 6667889999999
Q ss_pred HHHhcC-CHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 045672 315 MYCKCG-SLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVED 390 (643)
Q Consensus 315 ~y~~~g-~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 390 (643)
.|...| ++++|...|++..+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 999999 99999999998754 356789999999999999999999999998853 3345677778889999999999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----C-------CCCCHHHHHHHHHHHHHcCCHHHH
Q 045672 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM----P-------YEPDAVTWRALLGACKVHRNTDLA 459 (643)
Q Consensus 391 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~-------~~p~~~~~~~ll~~~~~~g~~~~a 459 (643)
|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ + ...+..+|..+...+...|++++|
T Consensus 178 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 178 AERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999873 3456788999999999999999999999876 1 023457899999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+..++++++..|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999987765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-17 Score=166.17 Aligned_cols=280 Identities=11% Similarity=0.004 Sum_probs=225.5
Q ss_pred HHHcCCHHHHHH-HHhhCCC---C----CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCh
Q 045672 217 YAKLGELRNAEC-VFNEMPT---R----DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288 (643)
Q Consensus 217 y~~~g~~~~A~~-~f~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 288 (643)
|...|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445688899998 8876543 1 35678899999999999999999999999864 4467788889999999999
Q ss_pred hHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHH---------------HHHHHHh
Q 045672 289 LELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWST---------------MISGLAQ 349 (643)
Q Consensus 289 ~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~---------------li~~~~~ 349 (643)
++.|...+..+.+ .+.+..++..+...|...|++++|...|+++... +...+.. .+..+..
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 9999999999999 6667888999999999999999999999987432 2222221 2333448
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 045672 350 NGYSQEALKLFESMKVSRIK-PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428 (643)
Q Consensus 350 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 428 (643)
.|++++|+..|+++...... ++..++..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999885321 14788889999999999999999999999874 3446788999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHccCChhHHHH
Q 045672 429 KLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD-----------PGTYILLSNIYANSQKWDEVAE 495 (643)
Q Consensus 429 ~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~ 495 (643)
+.++++ ...| +..+|..+...+...|++++|...+++++++.|++ ..+|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999987 3334 57789999999999999999999999999998877 7899999999999999999999
Q ss_pred HHHH
Q 045672 496 VRKT 499 (643)
Q Consensus 496 ~~~~ 499 (643)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-15 Score=158.41 Aligned_cols=378 Identities=8% Similarity=-0.016 Sum_probs=285.6
Q ss_pred hHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc----CCChhHH
Q 045672 57 RAMKAMHAMQCHGVRADSVTYAELIKCCLA----RHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVK----FSLLEEA 128 (643)
Q Consensus 57 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A 128 (643)
.++..++...+.| +...+..+...+.. .+++++|...++...+.| +...+..|..+|.. .++.++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455555555443 66677777777776 788899999998888764 45677778888887 8888999
Q ss_pred HHHHccCCC-CCcchHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCC
Q 045672 129 QVLFDQMPE-RNVVSWTTMISAYCD----AKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGF 203 (643)
Q Consensus 129 ~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~ 203 (643)
...|++..+ .+...+..|...|.. .+++++|+..|++..+.|
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------------------------------- 145 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--------------------------------- 145 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------------------------------
Confidence 988887655 366677778888877 788899999998887654
Q ss_pred CCchhHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CCcchHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHH
Q 045672 204 ESDVFVRSALIDIYAK----LGELRNAECVFNEMPT-RDLVVWNSIIGGFAQ----NSDVDEALNLYKRMKRAGFAADQS 274 (643)
Q Consensus 204 ~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 274 (643)
+...+..|..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|+++|++..+.| +..
T Consensus 146 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 220 (490)
T 2xm6_A 146 --RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DEL 220 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHH
Confidence 11223335555655 6788888888877644 466777788888877 788899999998888765 455
Q ss_pred HHHHHHHHHhc----CChhHhHHHHHHHHhhcCCchhHHhHHHHHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHHH
Q 045672 275 TLTSVLRACTG----LALLELGTQVHVHVLKYDHDLILNNALLDMYCK----CGSLEDAMSVFSRMIQ-KDVISWSTMIS 345 (643)
Q Consensus 275 t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~ 345 (643)
.+..+...+.. .++.+.|...+..+.+. .+...+..|..+|.. .++.++|...|++..+ .+...+..+..
T Consensus 221 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 299 (490)
T 2xm6_A 221 GQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAH 299 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56666666654 67888888888887763 234456677777877 8999999999998854 36677888888
Q ss_pred HHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 346 GLAQN-----GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG---FVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 346 ~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
.|... ++.++|+..|++..+.| +...+..+...+...| +.++|.+.|+...+. .+...+..|..+
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~ 372 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNA 372 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHH
Confidence 88887 89999999999998865 4456666666666656 789999999998873 467788889999
Q ss_pred HHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHc
Q 045672 418 LGR----AGKLQEAVKLIHEMPYEPDAVTWRALLGACKV----HRNTDLAICAAKKILNLDPQ---DPGTYILLSNIYAN 486 (643)
Q Consensus 418 ~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 486 (643)
|.. .+++++|.+.|++.-...+...+..|...+.. .++.++|...++++.+.+|+ ++.+...|+.++..
T Consensus 373 y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 988 89999999999887333467788888888887 89999999999999999854 66666666665543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-15 Score=159.18 Aligned_cols=407 Identities=11% Similarity=0.079 Sum_probs=291.2
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 38 NSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 38 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
|+.+|..++. +.+.|++++|..+|+++.+.. +.+...|...+..+.+.|++++|+.+|+.+++.. |+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 6678999998 588999999999999999753 5577789999999999999999999999999864 57777777765
Q ss_pred H-HHcCCChhHHHH----HHccCC-----C-CCcchHHHHHHHHHh---------CCChhHHHHHHHHHHHCCCCCChhh
Q 045672 118 M-HVKFSLLEEAQV----LFDQMP-----E-RNVVSWTTMISAYCD---------AKMNDKALELLIFMLREGVRPNMFT 177 (643)
Q Consensus 118 ~-~~~~g~~~~A~~----~f~~m~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~t 177 (643)
. ....|+.++|.+ +|+... . .+...|...+....+ .|++++|..+|++.+.. |+..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~- 163 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN- 163 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT-
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh-
Confidence 3 345677777765 666542 1 345678888776654 68899999999999872 4321
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhh-------CC------CCC-------
Q 045672 178 YSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE-------MP------TRD------- 237 (643)
Q Consensus 178 ~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-------~~------~~~------- 237 (643)
...+...+..... ..| ..+...++. .+.+++..|..++.. +. .|+
T Consensus 164 ~~~~~~~~~~~e~---------~~~----~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 164 IEQLWRDYNKYEE---------GIN----IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHHHHHHH---------HHC----HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHHHHHH---------hhc----hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 1111111111000 000 001111111 123445555554443 11 111
Q ss_pred -cchHHHHHHHHHhC----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------CChhH-------hHHH
Q 045672 238 -LVVWNSIIGGFAQN----SDV----DEALNLYKRMKRAGFAADQSTLTSVLRACTG-------LALLE-------LGTQ 294 (643)
Q Consensus 238 -~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~ 294 (643)
...|...+.....+ ++. ++|..+|++..... +-+...|......+.. .|+++ .|..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 24566665444332 233 47788999888752 3456677777777664 78877 8999
Q ss_pred HHHHHhh-c-CCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045672 295 VHVHVLK-Y-DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--K-DV-ISWSTMISGLAQNGYSQEALKLFESMKVSRI 368 (643)
Q Consensus 295 i~~~~~~-~-~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 368 (643)
+++.+++ . +.+..++..++..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.++|.++|++..+.
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-- 385 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-- 385 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 9999997 4 55688999999999999999999999998843 3 33 48999999999999999999999999875
Q ss_pred CCC-HHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--H
Q 045672 369 KPN-YITIVGVLFA-CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM----PYEPD--A 440 (643)
Q Consensus 369 ~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~ 440 (643)
.|+ ...+...... +...|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 333 3333332222 335899999999999998742 346788999999999999999999999987 23332 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 441 VTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 441 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
..|...+.....+|+.+.+..+.+++.+..|+
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 58999999899999999999999999998885
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.7e-17 Score=161.12 Aligned_cols=350 Identities=12% Similarity=0.084 Sum_probs=154.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 045672 86 ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165 (643)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 165 (643)
+.|++++|.+.++++ +++.+|..|..++.+.|++++|.+.|.+. +|..+|..++.++...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344555555555555 12235555666666666666666666432 3444555555555556666666554444
Q ss_pred HHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHH
Q 045672 166 MLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSII 245 (643)
Q Consensus 166 m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 245 (643)
.++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+.
T Consensus 87 ark~----------------------------------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IG 129 (449)
T 1b89_A 87 ARKK----------------------------------ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVG 129 (449)
T ss_dssp --------------------------------------------------------CHHHHTTTTTC---C---------
T ss_pred HHHh----------------------------------CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHH
Confidence 3321 23455666788888888888888877753 5667888888
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHH
Q 045672 246 GGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDA 325 (643)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A 325 (643)
..|...|++++|..+|..+ ..|..+..++.++|+++.|.+.+..+ .++.+|..++.+|...|+++.|
T Consensus 130 d~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 130 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp -------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHH
Confidence 8888888888888888865 36778888888888888888888777 3677888888888888999998
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHhHHhcC
Q 045672 326 MSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC--SHAGFVEDGWNHFKSMKKFYG 403 (643)
Q Consensus 326 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~ 403 (643)
......+. .++.-...++..|.+.|++++|+.+++...... +-....|+.+..++ .+.+++.+.++.|.. +.+
T Consensus 197 ~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~in 271 (449)
T 1b89_A 197 QMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS---RVN 271 (449)
T ss_dssp HHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSC
T ss_pred HHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---Hhc
Confidence 87777654 344444568888999999999999999887543 33344455444444 445566666665542 234
Q ss_pred CCC------ChHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 045672 404 IDP------GREHYSCMIDLLGRAGKLQEAVKLIHEMP-YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 404 ~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 476 (643)
++| +...|.-++-.|...++++.|...+-+-+ ..-+...+. ....+..+.+.--+...-.++..| ..
T Consensus 272 i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~---~~~~kv~n~elyYkai~fyl~~~p---~~ 345 (449)
T 1b89_A 272 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFK---DIITKVANVELYYRAIQFYLEFKP---LL 345 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHH---HHHHHCSSTHHHHHHHHHHHHHCG---GG
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHH---HHHhchhHHHHHHHHHHHHHhcCH---HH
Confidence 454 46678999999999999999887665542 211222222 222334444433333333333333 22
Q ss_pred H-------------HHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 477 Y-------------ILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 477 ~-------------~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
. ......+.+.|.+.-+..+++.+.+.+
T Consensus 346 l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n 386 (449)
T 1b89_A 346 LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN 386 (449)
T ss_dssp HHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 2 233445556666666666665555443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-18 Score=170.38 Aligned_cols=252 Identities=15% Similarity=0.109 Sum_probs=119.9
Q ss_pred HHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHH
Q 045672 218 AKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297 (643)
Q Consensus 218 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 297 (643)
-+.|++++|.++++++..| .+|+.|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++.
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3678899999999999665 4999999999999999999999965 3678899999999999999999999999
Q ss_pred HHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045672 298 HVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVG 377 (643)
Q Consensus 298 ~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 377 (643)
.+.+..+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..
T Consensus 86 ~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~ 153 (449)
T 1b89_A 86 MARKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGR 153 (449)
T ss_dssp -----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHH
T ss_pred HHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHH
Confidence 8888556688899999999999999999988864 67789999999999999999999999977 36889
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 045672 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTD 457 (643)
Q Consensus 378 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 457 (643)
+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.++
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCHH
T ss_pred HHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCHH
Confidence 999999999999999999877 26889999999999999999997776665544444 446888999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHcc--CChhHHHHHHH
Q 045672 458 LAICAAKKILNLDPQDPGTYILLSNIYANS--QKWDEVAEVRK 498 (643)
Q Consensus 458 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 498 (643)
+|..+++..+.+++.....|..|+-+|++- |+..+..+.|.
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999999999999999999764 45556665553
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-16 Score=159.70 Aligned_cols=260 Identities=10% Similarity=-0.019 Sum_probs=203.0
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHH
Q 045672 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDM 315 (643)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~ 315 (643)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+.+ .+.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44557777777888888888888888777753 33566777777778888888888888888877 55557778888888
Q ss_pred HHhcCCHHHHHHHHhhcCCCC---h----------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 045672 316 YCKCGSLEDAMSVFSRMIQKD---V----------ISWSTMISGLAQNGYSQEALKLFESMKVSRIK-PNYITIVGVLFA 381 (643)
Q Consensus 316 y~~~g~~~~A~~~~~~m~~~~---~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a 381 (643)
|.+.|++++|...|+++.+.+ . ..+..+...+...|++++|++.|+++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 888889988888888874321 1 22344578889999999999999999885421 157888899999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLA 459 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 459 (643)
+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.|+++ ...| +..+|..+...+...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999874 3456789999999999999999999999887 3344 477899999999999999999
Q ss_pred HHHHHHHHhcCCC------------CcchHHHHHHHHHccCChhHHHHHHHH
Q 045672 460 ICAAKKILNLDPQ------------DPGTYILLSNIYANSQKWDEVAEVRKT 499 (643)
Q Consensus 460 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 499 (643)
...+++++++.|+ +...+..++.++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998776 367899999999999999998887654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-15 Score=161.66 Aligned_cols=365 Identities=11% Similarity=0.005 Sum_probs=225.2
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHccCC-----------C-CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC---CCCC
Q 045672 110 FLVNILLNMHVKFSLLEEAQVLFDQMP-----------E-RNVVSWTTMISAYCDAKMNDKALELLIFMLREG---VRPN 174 (643)
Q Consensus 110 ~~~~~li~~~~~~g~~~~A~~~f~~m~-----------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~ 174 (643)
..||.|...|...|+.++|++.|++.. . ....+|+.+...|...|++++|+..|++..+.. ..|.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 345555555555555555555554331 1 235678888888889999999988888775421 0000
Q ss_pred hhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH--cCCHHHHHHHHhhCCC--C-CcchHHHHHHH--
Q 045672 175 MFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK--LGELRNAECVFNEMPT--R-DLVVWNSIIGG-- 247 (643)
Q Consensus 175 ~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g~~~~A~~~f~~~~~--~-~~~~~~~li~~-- 247 (643)
......++..+..++.+ .+++++|...|++..+ | ++..+..+...
T Consensus 132 ----------------------------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~ 183 (472)
T 4g1t_A 132 ----------------------------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY 183 (472)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred ----------------------------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 00112233333334444 3568999999987653 3 44555555444
Q ss_pred -HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----cCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCC
Q 045672 248 -FAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT----GLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGS 321 (643)
Q Consensus 248 -~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~ 321 (643)
+...++.++|++.|++..+.. +.+...+..+...+. ..++.+.|.+.+..+.+ .+.+..++..+...|.+.|+
T Consensus 184 ~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 184 RLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE 262 (472)
T ss_dssp HHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred HhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc
Confidence 345678889999998887753 234455555544443 34677889999998888 66677888999999999999
Q ss_pred HHHHHHHHhhcCC---CChhhHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045672 322 LEDAMSVFSRMIQ---KDVISWSTMISGLAQN-------------------GYSQEALKLFESMKVSRIKPNYITIVGVL 379 (643)
Q Consensus 322 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 379 (643)
+++|...|++..+ .+..+|..+...|... +..++|+..|++..... +.+..++..+.
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg 341 (472)
T 4g1t_A 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILA 341 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHH
Confidence 9999999988743 3455666666555332 33567888888877643 33355677788
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCC
Q 045672 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGR--EHYSCMID-LLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLGACKVHRN 455 (643)
Q Consensus 380 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~ 455 (643)
..+...|++++|...|++..+. ...|.. ..+..+.. .+...|++++|++.|++. .+.|+...+...
T Consensus 342 ~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~--------- 411 (472)
T 4g1t_A 342 SLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM--------- 411 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------
T ss_pred HHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------
Confidence 8899999999999999998763 222211 12233332 234678999999998876 556665443332
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeEE
Q 045672 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWI 514 (643)
Q Consensus 456 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 514 (643)
...+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.|-......+|+
T Consensus 412 ~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 34456778888899999999999999999999999999999999988764433334553
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-14 Score=150.59 Aligned_cols=361 Identities=12% Similarity=-0.000 Sum_probs=290.9
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHc----CCChhHHHHHHccCCC-CCcchHHHHHHHHHh----CCChhHHHHHHH
Q 045672 94 KLVHNHVLSGGFEPETFLVNILLNMHVK----FSLLEEAQVLFDQMPE-RNVVSWTTMISAYCD----AKMNDKALELLI 164 (643)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 164 (643)
...+....+. .+......|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|++.|+
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 3444444443 356677778888877 8999999999987654 467788888888988 899999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHH----cCCHHHHHHHHhhCCCC-Ccc
Q 045672 165 FMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAK----LGELRNAECVFNEMPTR-DLV 239 (643)
Q Consensus 165 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~-~~~ 239 (643)
+..+.| +...+..|..+|.. .+++++|.+.|++..+. +..
T Consensus 104 ~a~~~~-----------------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 148 (490)
T 2xm6_A 104 KAALKG-----------------------------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDS 148 (490)
T ss_dssp HHHHTT-----------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCC-----------------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 987654 22233346666776 78999999999887654 567
Q ss_pred hHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CChhHhHHHHHHHHhhcCCchhHHhH
Q 045672 240 VWNSIIGGFAQ----NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTG----LALLELGTQVHVHVLKYDHDLILNNA 311 (643)
Q Consensus 240 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~ 311 (643)
++..+...|.. .+++++|++.|++..+.| +...+..+...+.. .++.+.|...+..+.+. .+...+..
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~ 224 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-GDELGQLH 224 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHH
Confidence 88888888887 789999999999998875 56777777777776 88999999999998873 24567778
Q ss_pred HHHHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045672 312 LLDMYCK----CGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQ----NGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382 (643)
Q Consensus 312 Li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 382 (643)
|..+|.. .++.++|...|++..+ .+...+..+...|.. .++.++|++.|++..+.| +...+..+...+
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 301 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLY 301 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Confidence 8888886 8999999999998754 466777888888887 899999999999998765 445666677777
Q ss_pred hcc-----CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--
Q 045672 383 SHA-----GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG---KLQEAVKLIHEMPYEPDAVTWRALLGACKV-- 452 (643)
Q Consensus 383 ~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~-- 452 (643)
... ++.++|...|+...+. .+...+..+..+|.+.| ++++|.+.|++.-...+...+..|...+..
T Consensus 302 ~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 302 DKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGK 377 (490)
T ss_dssp HHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 766 8999999999999873 34567788888888867 789999999887333578888888888888
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHc----cCChhHHHHHHHHHHhCCC
Q 045672 453 --HRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN----SQKWDEVAEVRKTMRARGI 505 (643)
Q Consensus 453 --~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 505 (643)
.+++++|...++++.+.+ ++.++..|+.+|.. .++.++|.+.+++..+.|.
T Consensus 378 g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 899999999999998865 46799999999998 8999999999999998763
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.7e-16 Score=153.54 Aligned_cols=258 Identities=9% Similarity=-0.034 Sum_probs=193.3
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHH
Q 045672 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYC 317 (643)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~ 317 (643)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+.+ .+.+..++..+...|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 345555666666666666666666666542 22455555566666666666666666666666 4445566677777777
Q ss_pred hcCCHHHHHHHHhhcCCC---ChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045672 318 KCGSLEDAMSVFSRMIQK---DVISWSTM--------------IS-GLAQNGYSQEALKLFESMKVSRIKPNYITIVGVL 379 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 379 (643)
..|++++|...|+++.+. +...+..+ .. .+...|++++|+..++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 777777777777766322 22233322 22 3677889999999999998753 34677888889
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 045672 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTD 457 (643)
Q Consensus 380 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 457 (643)
..+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999874 3446778999999999999999999999887 3333 5778999999999999999
Q ss_pred HHHHHHHHHHhcCCC------------CcchHHHHHHHHHccCChhHHHHHHHHH
Q 045672 458 LAICAAKKILNLDPQ------------DPGTYILLSNIYANSQKWDEVAEVRKTM 500 (643)
Q Consensus 458 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 500 (643)
+|...++++++..|+ ++.++..++.+|...|++++|..++++.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999998 6889999999999999999999988644
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-13 Score=153.70 Aligned_cols=380 Identities=11% Similarity=0.062 Sum_probs=281.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhC
Q 045672 76 TYAELIKCCLARHAVEEAKLVHNHVLSGGF--EPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDA 153 (643)
Q Consensus 76 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 153 (643)
--...+++|...|.+.+|.++++.++..+- ..+....+.|+.+..+. +..+.....++...-+ ...+...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence 345567778888888888888888874321 13445666677666666 4455555555544322 44467777888
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhC
Q 045672 154 KMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233 (643)
Q Consensus 154 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 233 (643)
|.+++|..+|++.. -.....+.++. ..+++++..+.+.+. -+..+|..+..++.+.|++++|...|.+.
T Consensus 1063 glyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv---n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred CCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 88888888888852 11222333333 334444444444333 35788889999999999999999999774
Q ss_pred CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHH
Q 045672 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALL 313 (643)
Q Consensus 234 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li 313 (643)
.|...|..++..+.+.|++++|+++|...++.. ++....+.++.+|++.++++....+. + .++...+..+.
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-GPNNAHIQQVG 1202 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-CCCHHHHHHHH
Confidence 677888899999999999999999998777654 33333445888899998887544332 2 34445666799
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 045672 314 DMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN 393 (643)
Q Consensus 314 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 393 (643)
+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|++..|..
T Consensus 1203 d~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999985 48999999999999999999999976 356889999999999999999987
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhc
Q 045672 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKV--HRNTDLAICAAKKILNL 469 (643)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~ 469 (643)
.... +..++..+..++..|.+.|.+++|+.+++.. +..|. ...|.-|..++.+ -++..++.+.|..-..+
T Consensus 1272 cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini 1345 (1630)
T 1xi4_A 1272 CGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI 1345 (1630)
T ss_pred HHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 6643 3345677889999999999999999999776 54443 3456555555554 45677788888877776
Q ss_pred CC-----CCcchHHHHHHHHHccCChhHHHHH
Q 045672 470 DP-----QDPGTYILLSNIYANSQKWDEVAEV 496 (643)
Q Consensus 470 ~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 496 (643)
.| .+...|.-+...|.+.|.|+.|...
T Consensus 1346 ~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1346 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred chHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 65 5778899999999999999999853
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.70 E-value=7.1e-16 Score=157.22 Aligned_cols=275 Identities=13% Similarity=0.075 Sum_probs=202.6
Q ss_pred cCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHhcCChhHhHHHH
Q 045672 220 LGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALN-LYKRMKRAGF-AA--DQSTLTSVLRACTGLALLELGTQV 295 (643)
Q Consensus 220 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~i 295 (643)
.+.++.+...|+.+...+.. .+...|++++|++ .|.+...... .| +...+..+...+...|+++.|...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 86 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLL 86 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455555556555544332 2344588999998 8876554211 11 345677888899999999999999
Q ss_pred HHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045672 296 HVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN 371 (643)
Q Consensus 296 ~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 371 (643)
+..+.+ .+.+..++..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|++.|+++.... |+
T Consensus 87 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~ 164 (368)
T 1fch_A 87 FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PA 164 (368)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC
Confidence 999999 66678899999999999999999999999874 3467889999999999999999999999998853 33
Q ss_pred HH-HHHH---------------HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 045672 372 YI-TIVG---------------VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM- 434 (643)
Q Consensus 372 ~~-t~~~---------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 434 (643)
.. .+.. .+..+...|++++|...|+.+.+.....++...+..+...|.+.|++++|.+.++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 1111 233344889999999999999885222225788999999999999999999999887
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 435 PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 435 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
...| +..+|..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3334 57789999999999999999999999999999999999999999999999999999999998864
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.9e-15 Score=144.85 Aligned_cols=249 Identities=12% Similarity=0.020 Sum_probs=167.4
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHH
Q 045672 82 KCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALE 161 (643)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 161 (643)
+.....|++..|....+......+.+.......+..+|...|+++.|...++....++..++..+...+...|+.++|++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 44456788888888877654432221123455678899999999999998887655677888999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchH
Q 045672 162 LLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVW 241 (643)
Q Consensus 162 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~ 241 (643)
.++++...+..|+...+ +..+...|...|++++|.+.|++ ..+...+
T Consensus 87 ~l~~ll~~~~~P~~~~~-------------------------------~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~ 133 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTF-------------------------------LLMAASIYFYDQNPDAALRTLHQ--GDSLECM 133 (291)
T ss_dssp HHHHHHHSCCCCSCHHH-------------------------------HHHHHHHHHHTTCHHHHHHHHTT--CCSHHHH
T ss_pred HHHHHHhcccCCCCHHH-------------------------------HHHHHHHHHHCCCHHHHHHHHhC--CCCHHHH
Confidence 99999987766764433 23366788999999999999999 4577899
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH---HHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHH
Q 045672 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLT---SVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYC 317 (643)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~ 317 (643)
..++..|.+.|++++|.+.|+++.+.. |+..... ..+..+...|++++|..+++.+.+ .+.+..+++.+..+|.
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~ 211 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM 211 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 999999999999999999999998864 5532111 122222334555555555555555 4444455555555555
Q ss_pred hcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 045672 318 KCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQE-ALKLFESMKV 365 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~ 365 (643)
+.|++++|...|++... .+..+|..++..+...|+.++ +.++++++.+
T Consensus 212 ~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 212 AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55555555555554421 233445555555555554433 3344454444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-14 Score=142.49 Aligned_cols=266 Identities=8% Similarity=-0.011 Sum_probs=200.6
Q ss_pred HHHHcCCHHHHHHHHhhCCCCCc----chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHh
Q 045672 216 IYAKLGELRNAECVFNEMPTRDL----VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291 (643)
Q Consensus 216 ~y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 291 (643)
-....|++..|...++.....++ .....+..+|...|++++|+..++. .-+|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34556888888888777655432 2344567788888888888776643 134566677777777777788888
Q ss_pred HHHHHHHHhh---cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045672 292 GTQVHVHVLK---YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRI 368 (643)
Q Consensus 292 a~~i~~~~~~---~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 368 (643)
+.+.++.+.. .+.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|++.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 8888877765 244556677788899999999999999998 567788999999999999999999999999885
Q ss_pred CCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 045672 369 KPNYITI---VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTW 443 (643)
Q Consensus 369 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 443 (643)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++ ...| +..+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4664321 12233344568999999999999984 4567888999999999999999999999886 3344 56788
Q ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHH
Q 045672 444 RALLGACKVHRNTDL-AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAE 495 (643)
Q Consensus 444 ~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 495 (643)
..++..+...|+.++ +.++++++++++|+++.+. +...+.+.++++..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 889988888998865 6789999999999987543 44555555555544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.3e-16 Score=158.11 Aligned_cols=230 Identities=11% Similarity=0.015 Sum_probs=194.5
Q ss_pred CHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHH
Q 045672 272 DQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGL 347 (643)
Q Consensus 272 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 347 (643)
+...+......+...|+++.|...+..+.+ .+.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 345578888899999999999999999999 777788999999999999999999999998843 4677999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNY-----------ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
...|++++|+..|+++.+. .|+. ..+..+...+...|++++|..+|+++.+.....++...+..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999874 3432 22334577889999999999999999985222226889999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHH
Q 045672 417 LLGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 494 (643)
.|.+.|++++|.+.++++ ... .+..+|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999987 333 467899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 045672 495 EVRKTMRAR 503 (643)
Q Consensus 495 ~~~~~m~~~ 503 (643)
+.++++.+.
T Consensus 302 ~~~~~al~~ 310 (365)
T 4eqf_A 302 SNFLTALSL 310 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999864
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-12 Score=145.69 Aligned_cols=429 Identities=14% Similarity=0.088 Sum_probs=273.7
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC-HHHH---------HHHHHHHHHcCCC
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHA-VEEA---------KLVHNHVLSGGFE 106 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a---------~~~~~~~~~~g~~ 106 (643)
++...-..++...-+.++..--+..++.-...| ..|+.++|+|.+.|...++ ++.- +-+=+...+.++.
T Consensus 837 ~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~ 915 (1630)
T 1xi4_A 837 RGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPH 915 (1630)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcc
Confidence 344456667777777777777777788888888 5688899999988875443 3221 1111111111110
Q ss_pred C----------ch---------hHHHHHHHHHHcCCCh-----------hHHHHHHcc-----CCC-CCcchHHHHHHHH
Q 045672 107 P----------ET---------FLVNILLNMHVKFSLL-----------EEAQVLFDQ-----MPE-RNVVSWTTMISAY 150 (643)
Q Consensus 107 ~----------~~---------~~~~~li~~~~~~g~~-----------~~A~~~f~~-----m~~-~~~~~~~~li~~~ 150 (643)
. |. ..|-.+.+-+.+..+. +.=+++.+. +++ .|+.--...+++|
T Consensus 916 la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf 995 (1630)
T 1xi4_A 916 LACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAF 995 (1630)
T ss_pred hHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHH
Confidence 0 00 1111222222222211 112234443 222 3444456778899
Q ss_pred HhCCChhHHHHHHHHHHHCCC--CCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHH
Q 045672 151 CDAKMNDKALELLIFMLREGV--RPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAEC 228 (643)
Q Consensus 151 ~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 228 (643)
...|.+.+|++++++..-.+- .-+...-+.++....+. +..+..+.+.+.+ ..+ ...+...+...|.+++|..
T Consensus 996 ~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-~~d---~~eIA~Iai~lglyEEAf~ 1070 (1630)
T 1xi4_A 996 MTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-NYD---APDIANIAISNELFEEAFA 1070 (1630)
T ss_pred HhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-hcc---HHHHHHHHHhCCCHHHHHH
Confidence 999999999999999884321 01223333344333222 2222222222221 111 2223334444444444444
Q ss_pred HHhhCCC-------------------------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045672 229 VFNEMPT-------------------------RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283 (643)
Q Consensus 229 ~f~~~~~-------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 283 (643)
+|++... .+..+|..+..++.+.|++++|++.|.+. -|...|..++.+|
T Consensus 1071 IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~ 1144 (1630)
T 1xi4_A 1071 IFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAA 1144 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHH
Confidence 4444321 24567888888888888888888888542 4667778888888
Q ss_pred hcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045672 284 TGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESM 363 (643)
Q Consensus 284 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 363 (643)
.+.|+++++.+.+..+.+..++..+.+.++.+|++.+++++..... ..++...|..+...|...|++++|..+|...
T Consensus 1145 ~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1145 NTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 8888888888888888875555555666888888888888644443 3456667777888888888888888888874
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 045672 364 KVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTW 443 (643)
Q Consensus 364 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 443 (643)
..|..+...+.+.|++++|.+.+++. .+..+|..+..++...|++..|....... ..+...+
T Consensus 1222 ---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deL 1283 (1630)
T 1xi4_A 1222 ---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADEL 1283 (1630)
T ss_pred ---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHH
Confidence 36788888888888888888887765 33567777778888888888888766543 3455566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHcc--CChhHHHHHHH
Q 045672 444 RALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS--QKWDEVAEVRK 498 (643)
Q Consensus 444 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 498 (643)
..++..|...|.+++|+.+++..+.++|.+...|.-|+.+|++- ++..++.++|.
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 68888899999999999999999999999888998888888664 45556666554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.8e-17 Score=173.75 Aligned_cols=131 Identities=12% Similarity=0.078 Sum_probs=116.5
Q ss_pred CCchhHHhHHHHHHHhcCCHHHHHHHHhhc-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 045672 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRM-------IQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITI 375 (643)
Q Consensus 303 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m-------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 375 (643)
..-..+||+||++|+++|++++|.++|++| ..||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 334568999999999999999999999776 3579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCC-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 376 VGVLFACSHAGF-VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 376 ~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
+++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....|.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999998 57899999999996 99999999999999888876666555554443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-15 Score=147.87 Aligned_cols=261 Identities=10% Similarity=-0.031 Sum_probs=212.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045672 207 VFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRAC 283 (643)
Q Consensus 207 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 283 (643)
...+..+...+...|++++|..+|+++.+ .+..+|..+...+...|++++|.+.|+++.+.. +.+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34456677889999999999999988753 366788899999999999999999999998863 34677888889999
Q ss_pred hcCChhHhHHHHHHHHhh-cCCchhHHhHH--------------HH-HHHhcCCHHHHHHHHhhcCC---CChhhHHHHH
Q 045672 284 TGLALLELGTQVHVHVLK-YDHDLILNNAL--------------LD-MYCKCGSLEDAMSVFSRMIQ---KDVISWSTMI 344 (643)
Q Consensus 284 ~~~~~~~~a~~i~~~~~~-~~~~~~~~~~L--------------i~-~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li 344 (643)
...|+++.|...+..+.+ .+.+...+..+ .. .+...|++++|...|+++.+ .+...|..+.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 999999999999999998 44444444443 33 47788999999999998743 3677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 045672 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424 (643)
Q Consensus 345 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 424 (643)
..|...|++++|++.++++.+.. +.+..++..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999998753 345778889999999999999999999999874 344678899999999999999
Q ss_pred HHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 425 QEAVKLIHEM-PYEPD-------------AVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 425 ~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
++|.+.++++ ...|+ ...|..+..++...|++++|...+++.++..|
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 9999999877 22233 66888999999999999999999987766543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.2e-14 Score=146.79 Aligned_cols=377 Identities=12% Similarity=-0.014 Sum_probs=179.7
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHc--------CCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC--------
Q 045672 74 SVTYAELIKCCLARHAVEEAKLVHNHVLSG--------GFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE-------- 137 (643)
Q Consensus 74 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------- 137 (643)
...|+.+...+...|+.++|.+.++..++. ..+....+|+.+..+|...|++++|...|++..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666666666667777776666665542 0112234566666677777777776666654421
Q ss_pred ---CCcchHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCChhh-HHHHHHHHhchhhH---H---HHHHHHHHhCCCC
Q 045672 138 ---RNVVSWTTMISAYCD--AKMNDKALELLIFMLREGVRPNMFT-YSAVLRACDSLIIL---R---QLHCGIIKVGFES 205 (643)
Q Consensus 138 ---~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~---~---~~~~~~~~~g~~~ 205 (643)
....+++.+..++.. .+++++|++.|++..+. .|+... +..+..+....+.. + ..+...++.. +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 112344444444443 34567777777776654 344322 21111111111110 0 1111122211 11
Q ss_pred chhHHHHHHHHHH----HcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHH
Q 045672 206 DVFVRSALIDIYA----KLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAA-DQSTLT 277 (643)
Q Consensus 206 ~~~~~~~li~~y~----~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~ 277 (643)
+..++..+...+. ..|++++|.+.+++... .+..++..+...|...|++++|++.|.+..+. .| +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHH
Confidence 2223333333332 23455666666655432 24455666666666666666666666666654 23 233333
Q ss_pred HHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHH
Q 045672 278 SVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQ 354 (643)
Q Consensus 278 ~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~ 354 (643)
.+..++...+....+.. ...........+..+.|...|+... ..+..+|..+...|...|+++
T Consensus 286 ~lg~~y~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLR--------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHHHHHC--------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhhhHH--------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 33332211110000000 0000001111233566777776653 335668889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 045672 355 EALKLFESMKVSRIKPNYI--TIVGVLF-ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431 (643)
Q Consensus 355 ~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 431 (643)
+|++.|++..+....|... .+..+.. ...+.|+.++|+..|.+..+ +.|+........ ..+.+++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHH
Confidence 9999999998854333321 2222222 23578999999999998876 456543322222 2233333
Q ss_pred HhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 045672 432 HEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481 (643)
Q Consensus 432 ~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 481 (643)
++. ... .+..+|..+...+...|++++|++.|+++++++|.+|.+..-++
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 332 122 35668999999999999999999999999999998887665554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-15 Score=164.71 Aligned_cols=147 Identities=15% Similarity=0.127 Sum_probs=122.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 045672 337 VISWSTMISGLAQNGYSQEALKLFESMK---VSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSC 413 (643)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 413 (643)
..+||++|++|++.|+.++|.++|++|. ..|+.||.+||++||.+|++.|++++|.++|++|.+. |+.||..+|++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHH
Confidence 4599999999999999999999998876 4589999999999999999999999999999999995 99999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCC-----CcchHHHHHHH
Q 045672 414 MIDLLGRAGK-LQEAVKLIHEM---PYEPDAVTWRALLGACKVHRNTDLAICAAKKILN-LDPQ-----DPGTYILLSNI 483 (643)
Q Consensus 414 li~~~~~~g~-~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~-----~~~~~~~l~~~ 483 (643)
||+++++.|+ .++|.++|++| ++.||..+|++++.++.+.+ .++..+++.. ..|+ ...+...|-+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 9999999998 57899999999 89999999999997655442 3333333321 1121 13345578888
Q ss_pred HHccC
Q 045672 484 YANSQ 488 (643)
Q Consensus 484 ~~~~g 488 (643)
|++.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 88776
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-13 Score=131.82 Aligned_cols=219 Identities=15% Similarity=0.095 Sum_probs=163.5
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHh
Q 045672 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCK 318 (643)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~ 318 (643)
..|..+...+...|++++|+..|++..+.. .+...+.. +...|..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~---------------------------------~~~~~~~ 50 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNN---------------------------------RAAAEYE 50 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHH---------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHH---------------------------------HHHHHHH
Confidence 456677777888888888888888777765 45555544 4444555
Q ss_pred cCCHHHHHHHHhhcCCC------C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 045672 319 CGSLEDAMSVFSRMIQK------D----VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388 (643)
Q Consensus 319 ~g~~~~A~~~~~~m~~~------~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 388 (643)
.|++++|...|++..+. + ...|..+...|...|++++|+..|++.... .|+. ..+...|++
T Consensus 51 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~ 121 (258)
T 3uq3_A 51 KGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNA 121 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHH
Confidence 55555555555544221 1 456777778888888888888888888773 4553 234556778
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045672 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY-EPDAVTWRALLGACKVHRNTDLAICAAKKI 466 (643)
Q Consensus 389 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 466 (643)
++|...++.+.+ ..+.+...+..+...+.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|+..++++
T Consensus 122 ~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 122 EKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 888888888876 22335667888888888999999999988877 22 235778888888899999999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 467 LNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 467 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888753
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.7e-14 Score=133.35 Aligned_cols=238 Identities=13% Similarity=0.040 Sum_probs=166.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 045672 207 VFVRSALIDIYAKLGELRNAECVFNEMPT--RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF--AADQSTLTSVLRA 282 (643)
Q Consensus 207 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a 282 (643)
...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+... .|+...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------- 77 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV------- 77 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH-------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH-------
Confidence 46788899999999999999999987533 6778899999999999999999999999876421 112100
Q ss_pred HhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045672 283 CTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFES 362 (643)
Q Consensus 283 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 362 (643)
...++..+...|.+.|++++|...|++..+.+.. ...+...|++++|+..+++
T Consensus 78 ----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 78 ----------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEA 130 (258)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHH
Confidence 0123344555556666666666666555321111 2345556677777777777
Q ss_pred HHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C
Q 045672 363 MKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-D 439 (643)
Q Consensus 363 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 439 (643)
+... .|+ ...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +
T Consensus 131 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 131 EAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp HHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence 7663 333 455666677777778888888888777763 2345667777888888888888888888776 2233 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCcchHHHHHH
Q 045672 440 AVTWRALLGACKVHRNTDLAICAAKKILNLD------PQDPGTYILLSN 482 (643)
Q Consensus 440 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 482 (643)
...|..+...+...|++++|...+++++++. |++...+..+..
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 6678888888888899999999999988887 776655555543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-13 Score=129.01 Aligned_cols=195 Identities=14% Similarity=0.060 Sum_probs=154.2
Q ss_pred CCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 045672 303 DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGV 378 (643)
Q Consensus 303 ~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 378 (643)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45566777888889999999999999998743 35678888999999999999999999998875 454 6678888
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 045672 379 LFACSHA-----------GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRAL 446 (643)
Q Consensus 379 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 446 (643)
...+... |++++|...|++..+. -+.+...+..+..+|...|++++|.+.|++. ....+...|..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 9999999999999873 2335778889999999999999999999887 222678889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 447 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
...+...|++++|+..++++++.+|+++.++..++.++...|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-13 Score=132.47 Aligned_cols=240 Identities=10% Similarity=-0.057 Sum_probs=183.2
Q ss_pred hCCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHH
Q 045672 250 QNSDVDEALNLYKRMKRAGFA---ADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDA 325 (643)
Q Consensus 250 ~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A 325 (643)
..|++++|+..|+++.+.... .+..++..+...+...|+++.|...+..+.+ .+.+..++..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 346778888888877765321 1345666777777788888888888888877 555677888889999999999999
Q ss_pred HHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 045672 326 MSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFY 402 (643)
Q Consensus 326 ~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 402 (643)
...|++..+ .+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...+......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999988743 35778999999999999999999999999874 566555555555667779999999999888774
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 045672 403 GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 403 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 476 (643)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 33444444 4777788889999999999876 32232 4678888899999999999999999999999977544
Q ss_pred HHHHHHHHHccCChhHHHHHH
Q 045672 477 YILLSNIYANSQKWDEVAEVR 497 (643)
Q Consensus 477 ~~~l~~~~~~~g~~~~a~~~~ 497 (643)
+ ..++...|++++|.+-+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 3 66778888998887765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.7e-13 Score=128.77 Aligned_cols=243 Identities=15% Similarity=0.032 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 045672 209 VRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAAD--QSTLTSVLRAC 283 (643)
Q Consensus 209 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~ 283 (643)
........|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.+..|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344566677777888888888776543 2445777777778888888888888877776321221 12245555555
Q ss_pred hcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHH
Q 045672 284 TGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKL 359 (643)
Q Consensus 284 ~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l 359 (643)
...|+++.|...+..+.+ .+.+..++..+...|...|++++|...|++..+. +...|..+...+...+++++|++.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555 3334445555555555555555555555554321 233344343122222345555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC---HHHHHHHHHhC--
Q 045672 360 FESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK---LQEAVKLIHEM-- 434 (643)
Q Consensus 360 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-- 434 (643)
|++..+. .|+ +...+..+...+...|+ +++|...++++
T Consensus 165 ~~~a~~~--~p~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 165 FVKVLEL--KPN-----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHH--STT-----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHh--Ccc-----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 5444442 222 23333344444444443 33333333332
Q ss_pred --CCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccC
Q 045672 435 --PYEPD------AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488 (643)
Q Consensus 435 --~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 488 (643)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+.......+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 01122 2456677778888999999999999999999999877777766555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.8e-12 Score=131.79 Aligned_cols=368 Identities=11% Similarity=0.034 Sum_probs=192.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCh---hHHHHHHccCCCCCcchHHHHHHHHHhCC--
Q 045672 80 LIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLL---EEAQVLFDQMPERNVVSWTTMISAYCDAK-- 154 (643)
Q Consensus 80 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g-- 154 (643)
+...+.+.|++++|.+.+....+.|. ...+..|..+|...|+. ++|...|++..+.+...+..|...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 34445556667777777777666552 22333455555556666 67777776666555556666666444444
Q ss_pred ---ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHH------HHHHHHHHhCCCCchhHHHHHHHHHHHcC----
Q 045672 155 ---MNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILR------QLHCGIIKVGFESDVFVRSALIDIYAKLG---- 221 (643)
Q Consensus 155 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~------~~~~~~~~~g~~~~~~~~~~li~~y~~~g---- 221 (643)
++++|+..|++..+.|... .+..+-..+...+... +........| +......|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 5567777777776654322 2222222222111111 1111122222 2334445566666666
Q ss_pred CHHHHHHHHhhCCCCCcchHHHHHHHHHhCC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHH
Q 045672 222 ELRNAECVFNEMPTRDLVVWNSIIGGFAQNS---DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVH 298 (643)
Q Consensus 222 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 298 (643)
..+.+..++......++.++..|...|...| +.++|++.|++..+.| .++...+
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~---------------------- 216 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRV---------------------- 216 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHH----------------------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHH----------------------
Confidence 3444555555555556667777777777777 7777777777776665 2233322
Q ss_pred HhhcCCchhHHhHHHHHHHhc----CCHHHHHHHHhhcCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCC
Q 045672 299 VLKYDHDLILNNALLDMYCKC----GSLEDAMSVFSRMIQKDVISWSTMISG-L--AQNGYSQEALKLFESMKVSRIKPN 371 (643)
Q Consensus 299 ~~~~~~~~~~~~~Li~~y~~~----g~~~~A~~~~~~m~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~ 371 (643)
..|..+|... ++.++|...|+.....+...+..+... | ...|+.++|++.|++..+.| +
T Consensus 217 -----------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~ 282 (452)
T 3e4b_A 217 -----------DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---Q 282 (452)
T ss_dssp -----------HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---C
T ss_pred -----------HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---C
Confidence 3344444333 577777777777663355566666665 3 35678888888888877765 4
Q ss_pred HHHHHHHHHHHhccC-----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHH
Q 045672 372 YITIVGVLFACSHAG-----FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR----AGKLQEAVKLIHEMPYEPDAVT 442 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~ 442 (643)
...+..+...|. .| +.++|...|+... +-+...+..|..+|.. ..++++|.+.|++.-...+...
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A 356 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA 356 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH
Confidence 455555555554 44 7888888777664 3355566666666655 3378888888877622223334
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH--HccCChhHHHHHHHHHH
Q 045672 443 WRALLGACKV----HRNTDLAICAAKKILNLDPQDPGTYILLSNIY--ANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 443 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~ 501 (643)
...|...|.. ..+.++|...++++.+.++.+ +...+..+. ...++.++|.++.++-+
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4444444442 457888888888887776543 333333332 23345556666665544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-12 Score=120.27 Aligned_cols=203 Identities=11% Similarity=0.033 Sum_probs=117.0
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHH
Q 045672 238 LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYC 317 (643)
Q Consensus 238 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~ 317 (643)
...|..+...+...|++++|++.|+++.+.. +.+.. .+..+...|.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~---------------------------------~~~~la~~~~ 82 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSAD---------------------------------AHAALAVVFQ 82 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHH---------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHH---------------------------------HHHHHHHHHH
Confidence 3455566666666666666666666665532 11222 2344445555
Q ss_pred hcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHH
Q 045672 318 KCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWN 393 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 393 (643)
+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++...+..|+ ...+..+...+...|++++|..
T Consensus 83 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 83 TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555542 12445566666666666666666666666655323343 4455556666666667777766
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
.++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.++|...++++++..|
T Consensus 163 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 163 YFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 66666653 1234555666666666666666666666655 222 2444555566666666777777777777776666
Q ss_pred CCcch
Q 045672 472 QDPGT 476 (643)
Q Consensus 472 ~~~~~ 476 (643)
+++..
T Consensus 241 ~~~~~ 245 (252)
T 2ho1_A 241 GSLEY 245 (252)
T ss_dssp TSHHH
T ss_pred CCHHH
Confidence 65543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-12 Score=118.14 Aligned_cols=196 Identities=10% Similarity=-0.013 Sum_probs=147.4
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 382 (643)
..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.... +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44556677777788888888888776632 345677778888888888888888888877643 33566777777788
Q ss_pred hcc-CCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 045672 383 SHA-GFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDL 458 (643)
Q Consensus 383 ~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 458 (643)
... |++++|...++.+.+ .+..|+ ...+..+...+.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 888 888888888888776 233333 566777888888888888888888776 2223 46677778888888888888
Q ss_pred HHHHHHHHHhcCC-CCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 459 AICAAKKILNLDP-QDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 459 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
|...++++++..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888888888 78778888888888888888888888887653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-12 Score=121.67 Aligned_cols=197 Identities=9% Similarity=-0.056 Sum_probs=170.8
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC 382 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 382 (643)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45567788889999999999999988743 467789999999999999999999999998753 33577888889999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 045672 383 SHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLA 459 (643)
Q Consensus 383 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 459 (643)
...|++++|.++++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999876 23445 4667888999999999999999999887 2233 577888999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
...++++++..|++...+..++.+|...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=124.69 Aligned_cols=165 Identities=12% Similarity=0.051 Sum_probs=69.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 045672 312 LLDMYCKCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388 (643)
Q Consensus 312 Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 388 (643)
+...|.+.|++++|...|+++. ..+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++
T Consensus 63 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 141 (243)
T 2q7f_A 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQP 141 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccH
Confidence 3333444444444444444331 1133344444444444444444444444444322 12233344444444444444
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045672 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY-EPDAVTWRALLGACKVHRNTDLAICAAKKI 466 (643)
Q Consensus 389 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 466 (643)
++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. ..+..+|..+...+...|++++|...++++
T Consensus 142 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 142 KLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4444444444432 1223334444444444444444444444433 11 112334444444444444444444444444
Q ss_pred HhcCCCCcchHHH
Q 045672 467 LNLDPQDPGTYIL 479 (643)
Q Consensus 467 ~~~~p~~~~~~~~ 479 (643)
++..|+++.++..
T Consensus 220 ~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 220 IDIQPDHMLALHA 232 (243)
T ss_dssp HHHCTTCHHHHHH
T ss_pred HccCcchHHHHHH
Confidence 4444444444333
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-12 Score=123.62 Aligned_cols=197 Identities=12% Similarity=0.100 Sum_probs=155.8
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045672 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA 381 (643)
Q Consensus 305 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 381 (643)
....+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|++.|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345566778888899999999999988743 356788899999999999999999999998753 3457788888999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY-EPDAVTWRALLGACKVHRNTDLA 459 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a 459 (643)
+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. ..+...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999874 3456778999999999999999999999887 22 24677888899999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 460 ICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999998743
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-11 Score=115.19 Aligned_cols=208 Identities=11% Similarity=0.005 Sum_probs=149.4
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHH
Q 045672 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMY 316 (643)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y 316 (643)
+...|..+...+...|++++|++.|+++.+.. | .+...+..+...|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~--------------------------------~~~~~~~~l~~~~ 52 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--P--------------------------------KNELAWLVRAEIY 52 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T--------------------------------TCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c--------------------------------cchHHHHHHHHHH
Confidence 34556666777777777777777777666542 2 2223345556666
Q ss_pred HhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHH
Q 045672 317 CKCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQN-GYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDG 391 (643)
Q Consensus 317 ~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 391 (643)
...|++++|...|+++. ..+...|..+...+... |++++|+..|+++.+.+..|+ ...+..+...+...|++++|
T Consensus 53 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 53 QYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 66777777777776653 23556777778888888 888888888888877333444 56677777888888888888
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE--PDAVTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 392 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.+.|...++.+.+
T Consensus 133 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 133 EAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888763 2335777888888899999999999888876 222 3566677777778899999999999999999
Q ss_pred cCCCCcchHHHH
Q 045672 469 LDPQDPGTYILL 480 (643)
Q Consensus 469 ~~p~~~~~~~~l 480 (643)
..|+++.....+
T Consensus 211 ~~p~~~~~~~~l 222 (225)
T 2vq2_A 211 NFPYSEELQTVL 222 (225)
T ss_dssp HCTTCHHHHHHH
T ss_pred hCCCCHHHHHHh
Confidence 999887655443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.3e-12 Score=118.00 Aligned_cols=191 Identities=15% Similarity=0.022 Sum_probs=89.3
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHH
Q 045672 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYC 317 (643)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~ 317 (643)
..|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+ .+.+...+..+...|.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 334444444444444444444444444321 11333333344444444444444444444444 2223334444555555
Q ss_pred hc-----------CCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 045672 318 KC-----------GSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383 (643)
Q Consensus 318 ~~-----------g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 383 (643)
+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 55 556666655555422 234455555666666666666666666665544 45555556666666
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 384 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
..|++++|...|+...+. .+.+...+..+...+.+.|++++|.+.+++.
T Consensus 163 ~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666552 2224455555666666666666666655543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.5e-12 Score=130.53 Aligned_cols=311 Identities=12% Similarity=0.044 Sum_probs=126.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCH--
Q 045672 146 MISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGEL-- 223 (643)
Q Consensus 146 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-- 223 (643)
+...+.+.|++++|+++|++..+.|- ++.. . .|..+|...|+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~A~--~--------------------------------~Lg~~y~~~g~~~d 53 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SEAQ--V--------------------------------GLADIQVGTRDPAQ 53 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CTGG--G--------------------------------TCC-----------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HHHH--H--------------------------------HHHHHHHccCCCCC
Confidence 55667788999999999999877652 2221 1 122223333444
Q ss_pred -HHHHHHHhhCCCCCcchHHHHHHHHHhCC-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHH
Q 045672 224 -RNAECVFNEMPTRDLVVWNSIIGGFAQNS-----DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHV 297 (643)
Q Consensus 224 -~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 297 (643)
++|...|++..+.++..+..+...+...+ ++++|+.+|++..+.|... .+..+...+...+..+.+...+.
T Consensus 54 ~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~ 130 (452)
T 3e4b_A 54 IKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQ 130 (452)
T ss_dssp -----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHH
Confidence 55555555544444444444444333333 4445555555555443211 23333333333333222222222
Q ss_pred HHhh--cCCchhHHhHHHHHHHhcC----CHHHHHHHHhhcCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCC
Q 045672 298 HVLK--YDHDLILNNALLDMYCKCG----SLEDAMSVFSRMIQKDVISWSTMISGLAQNG---YSQEALKLFESMKVSRI 368 (643)
Q Consensus 298 ~~~~--~~~~~~~~~~Li~~y~~~g----~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~ 368 (643)
...+ -..+......|...|...+ ..+.+..+++.....+...+..+...|...| +.++|++.|++..+.|
T Consensus 131 ~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g- 209 (452)
T 3e4b_A 131 QISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG- 209 (452)
T ss_dssp HHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-
Confidence 2222 1122333344444444444 2333333344444444444444555555555 4555555555554443
Q ss_pred CCCHHHHHHHHHHHhcc----CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-H--HhcCCHHHHHHHHHhCCCCCCHH
Q 045672 369 KPNYITIVGVLFACSHA----GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL-L--GRAGKLQEAVKLIHEMPYEPDAV 441 (643)
Q Consensus 369 ~p~~~t~~~ll~a~~~~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~ 441 (643)
.++...+..+...|... ++.++|...|+... +-+...+..|..+ | ...|++++|.+.|++.-...+..
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~ 284 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPR 284 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 23333223333333322 34555555554443 1223333333333 2 23445555555554441112333
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHc----cCChhHHHHHHHHHHhCC
Q 045672 442 TWRALLGACKVHR-----NTDLAICAAKKILNLDPQDPGTYILLSNIYAN----SQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 442 ~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 504 (643)
.+..|...|. .| ++++|+..|+++. |.++.++..|+.+|.. ..++++|.+.+++..+.|
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 4443333333 33 5555555555444 4444455555554444 224455555555444433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-10 Score=121.27 Aligned_cols=423 Identities=8% Similarity=0.030 Sum_probs=266.0
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC---HHHHHHHHHHHHHcCC-CCchhHH
Q 045672 37 RNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHA---VEEAKLVHNHVLSGGF-EPETFLV 112 (643)
Q Consensus 37 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~-~~~~~~~ 112 (643)
.|..+|..+|..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ ++.+..+|+..+...+ +|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 36777888887777777777788888877764 24455666666666666677 7788888887777541 3566666
Q ss_pred HHHHHHHHcCCCh--------hHHHHHHccCC------CC-CcchHHHHHHHHHh---------CCChhHHHHHHHHHHH
Q 045672 113 NILLNMHVKFSLL--------EEAQVLFDQMP------ER-NVVSWTTMISAYCD---------AKMNDKALELLIFMLR 168 (643)
Q Consensus 113 ~~li~~~~~~g~~--------~~A~~~f~~m~------~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 168 (643)
..-+....+.++. +...++|+... .+ +...|...+..... +++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 6666554444433 22335665421 12 23456666654332 2345667777777763
Q ss_pred CCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhh-------CCC------
Q 045672 169 EGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE-------MPT------ 235 (643)
Q Consensus 169 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-------~~~------ 235 (643)
. |-.. +..+...+... .+. + +..+...++.- ...+++.|...+.+ +..
T Consensus 223 i---P~~~-~~~~w~~Y~~f----------e~~-~--~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 223 Q---PMDC-LESMWQRYTQW----------EQD-V--NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp S---CCSS-HHHHHHHHHHH----------HHH-H--CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred C---ccHH-HHHHHHHHHHH----------HHh-c--CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 2 2211 11111111100 000 0 00000011110 01123333333322 110
Q ss_pred --------C--C------cchHHHHHHHHHhCCC-------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhH
Q 045672 236 --------R--D------LVVWNSIIGGFAQNSD-------VDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELG 292 (643)
Q Consensus 236 --------~--~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 292 (643)
| + ...|...+.---.++. .+.+..+|++.+.. .+-+...|...+.-+...|+.+.|
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHH
Confidence 0 1 1346666654444331 23456678877775 344677777777777788888899
Q ss_pred H-HHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-------------C------------ChhhHHHHHH
Q 045672 293 T-QVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ-------------K------------DVISWSTMIS 345 (643)
Q Consensus 293 ~-~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-------------~------------~~~~~~~li~ 345 (643)
. .+++.+.. .+.+..++-.++...-+.|+++.|+.+|+++.. | ....|-..+.
T Consensus 363 ~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 363 ITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 6 99999999 777778888899999999999999999998753 2 1236888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 045672 346 GLAQNGYSQEALKLFESMKVS-RIKPNYITIVGVLFACSH-AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423 (643)
Q Consensus 346 ~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 423 (643)
...+.|..+.|..+|.+..+. + .+....|......-.+ .++.+.|..+|+...+.+ +.+...+...++.....|+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCC
Confidence 888889999999999999875 2 1122333322222223 355899999999999853 3456667888998999999
Q ss_pred HHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 045672 424 LQEAVKLIHEM-PYEP----DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484 (643)
Q Consensus 424 ~~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 484 (643)
.+.|..+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|+++ ....+++-|
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 99999999987 2223 345899999999999999999999999999999875 444444444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.7e-11 Score=116.68 Aligned_cols=223 Identities=12% Similarity=0.025 Sum_probs=167.6
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHH
Q 045672 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMY 316 (643)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y 316 (643)
+..++..+...|...|++++|++.|++..+.+ +...+ ..+...|
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~---------------------------------~~lg~~~ 48 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGC---------------------------------FNLGVLY 48 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHH---------------------------------HHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHH---------------------------------HHHHHHH
Confidence 55667777788888888888888888777632 22333 3455556
Q ss_pred Hh----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---
Q 045672 317 CK----CGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQ----NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH--- 384 (643)
Q Consensus 317 ~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--- 384 (643)
.. .|++++|...|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+...+..
T Consensus 49 ~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 49 YQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKV 125 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSS
T ss_pred HcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCC
Confidence 66 7777777777766533 256677777777877 888888888888887764 56677777777777
Q ss_pred -cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 045672 385 -AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR----AGKLQEAVKLIHEMPYEPDAVTWRALLGACKV----HRN 455 (643)
Q Consensus 385 -~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~ 455 (643)
.+++++|...|+...+. + +...+..+...|.+ .+++++|.+.+++.-...+...+..+...+.. .++
T Consensus 126 ~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp SCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred cccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcc
Confidence 88888888888888773 3 45667777777877 88888888888776222456677777788888 889
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHc----cCChhHHHHHHHHHHhCC
Q 045672 456 TDLAICAAKKILNLDPQDPGTYILLSNIYAN----SQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 456 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 504 (643)
+++|+..++++.+.+| +..+..++.+|.. .+++++|.+.+++..+.|
T Consensus 202 ~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 202 FKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9999999999988876 5688889999988 899999999999888765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=5.9e-12 Score=127.78 Aligned_cols=244 Identities=9% Similarity=0.078 Sum_probs=183.3
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCh-hHhHHHHHHHHhh-cCCchhHHhHHHHHH
Q 045672 239 VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL-LELGTQVHVHVLK-YDHDLILNNALLDMY 316 (643)
Q Consensus 239 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~-~~~~~~~~~~Li~~y 316 (643)
..|+.+...+.+.|++++|++.|++..+.. +-+...|..+..++...|+ +++|...+..+++ .+.+..+|+.+..+|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456777777777788888888888777742 2245666777777777775 8888888888777 555677788888888
Q ss_pred HhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHH-
Q 045672 317 CKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSH-AGFVEDG- 391 (643)
Q Consensus 317 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a- 391 (643)
.+.|++++|...|+++.+ .+...|..+..++.+.|++++|+..|+++++.. +-+...|..+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 888888888888888743 466788888888888999999999999988753 2346778888888877 5654666
Q ss_pred ----HHHHHHhHHhcCCCCChHHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC--------C-
Q 045672 392 ----WNHFKSMKKFYGIDPGREHYSCMIDLLGRAG--KLQEAVKLIHEMPYEP-DAVTWRALLGACKVHR--------N- 455 (643)
Q Consensus 392 ----~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g--------~- 455 (643)
+..|+...+. -+-+...|..+..+|.+.| ++++|.+.+.++...| +...+..+...+...| +
T Consensus 256 ~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 256 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 4777777763 2335667888888888888 5888888888774445 4567778888877763 2
Q ss_pred HHHHHHHHHHH-HhcCCCCcchHHHHHHHHHc
Q 045672 456 TDLAICAAKKI-LNLDPQDPGTYILLSNIYAN 486 (643)
Q Consensus 456 ~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 486 (643)
.++|+.+++++ ++++|.....|..++..+..
T Consensus 334 ~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 334 LNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 58999999999 89999988888877776653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-12 Score=130.82 Aligned_cols=259 Identities=14% Similarity=0.056 Sum_probs=161.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcCChhHhHHHHHHHHhh----c---CCchhHHhH
Q 045672 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAAD----QSTLTSVLRACTGLALLELGTQVHVHVLK----Y---DHDLILNNA 311 (643)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~---~~~~~~~~~ 311 (643)
.....+...|++++|+..|++..+.+. .+ ...+..+...+...|+++.|...+..+.. . +....++..
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 334444444444444444444444311 11 12333344444444444444444444433 1 011234556
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC-----C----hhhHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 045672 312 LLDMYCKCGSLEDAMSVFSRMIQK-----D----VISWSTMISGLAQNGY--------------------SQEALKLFES 362 (643)
Q Consensus 312 Li~~y~~~g~~~~A~~~~~~m~~~-----~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~ 362 (643)
+...|...|++++|...|++..+. + ..++..+...|...|+ +++|++.+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 666677777777777766655321 1 3366777777777777 7888887776
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 045672 363 MKVS----RIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHE 433 (643)
Q Consensus 363 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 433 (643)
.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5431 11122 345667777788888888888888877653211222 23677788888889999998888876
Q ss_pred C----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHccCChhHHHHHHHH
Q 045672 434 M----PYEPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQD------PGTYILLSNIYANSQKWDEVAEVRKT 499 (643)
Q Consensus 434 m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 499 (643)
. +..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+.+++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 11122 4467777788889999999999999988764332 45788899999999999999999988
Q ss_pred HHh
Q 045672 500 MRA 502 (643)
Q Consensus 500 m~~ 502 (643)
..+
T Consensus 333 al~ 335 (406)
T 3sf4_A 333 HLE 335 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-12 Score=134.24 Aligned_cols=259 Identities=11% Similarity=0.020 Sum_probs=168.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhcCChhHhHHHHHHHHhhc-------CCchhHHhHH
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQ----STLTSVLRACTGLALLELGTQVHVHVLKY-------DHDLILNNAL 312 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-------~~~~~~~~~L 312 (643)
+...+...|++++|+..|++..+.+.. +. ..+..+...+...|+++.|...+..+.+. +....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344444555555555555555443211 11 23444444445555555555555554441 1223455666
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---------ChhhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC
Q 045672 313 LDMYCKCGSLEDAMSVFSRMIQK---------DVISWSTMISGLAQNGY-----------------SQEALKLFESMKVS 366 (643)
Q Consensus 313 i~~y~~~g~~~~A~~~~~~m~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~~~ 366 (643)
...|...|++++|...|++..+. ...+|..+...|...|+ +++|++.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 77777777777777777665221 23467777777888888 88888887775431
Q ss_pred ----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 045672 367 ----RIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM--- 434 (643)
Q Consensus 367 ----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m--- 434 (643)
+-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11121 346667777888889999998888887653211112 236778888899999999999888766
Q ss_pred -CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 435 -PYEPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQ------DPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 435 -~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+...+ ..++..+...+...|++++|...++++++..+. ...++..++.+|...|++++|.+.+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11111 456777888899999999999999999886443 2348889999999999999999999988753
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-12 Score=126.81 Aligned_cols=257 Identities=14% Similarity=0.071 Sum_probs=162.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhcCChhHhHHHHHHHHhh----c---CCchhHHhHHHH
Q 045672 246 GGFAQNSDVDEALNLYKRMKRAGFAAD----QSTLTSVLRACTGLALLELGTQVHVHVLK----Y---DHDLILNNALLD 314 (643)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~---~~~~~~~~~Li~ 314 (643)
..+...|++++|+..|++..+.... + ...+..+...+...|+++.|...+..+.+ . +....++..+..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 3344444444444444444443111 1 12333344444444444444444444433 0 011334556667
Q ss_pred HHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 045672 315 MYCKCGSLEDAMSVFSRMIQ-----KD----VISWSTMISGLAQNGY--------------------SQEALKLFESMKV 365 (643)
Q Consensus 315 ~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~~ 365 (643)
.|...|++++|...|++..+ .+ ..++..+...|...|+ +++|++.+++...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777777777777766522 11 2366677777777777 7888887776543
Q ss_pred C----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 045672 366 S----RIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM-- 434 (643)
Q Consensus 366 ~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-- 434 (643)
. +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|.+.|++++|.+.+++.
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 11121 345666777788888898888888877653111112 236778888899999999999888765
Q ss_pred --CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 435 --PYEPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQD------PGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 435 --~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|.+.+++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 11122 4467777788999999999999999998765432 34788999999999999999999998876
Q ss_pred C
Q 045672 503 R 503 (643)
Q Consensus 503 ~ 503 (643)
.
T Consensus 332 ~ 332 (338)
T 3ro2_A 332 I 332 (338)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.7e-12 Score=120.48 Aligned_cols=217 Identities=8% Similarity=-0.044 Sum_probs=160.2
Q ss_pred cCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CCh----hhHHHHHHHHHhcCCHHHHH
Q 045672 285 GLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--KDV----ISWSTMISGLAQNGYSQEAL 357 (643)
Q Consensus 285 ~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~~----~~~~~li~~~~~~g~~~~A~ 357 (643)
..|+++.|...+..+.+ .+.+...+..+...|...|++++|...|++..+ ++. .+|..+...|...|++++|+
T Consensus 15 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 15 KNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp TTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 33333333333333333 222334556677778888888888888887744 222 24788889999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 045672 358 KLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY 436 (643)
Q Consensus 358 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 436 (643)
+.|++..+.. +.+..++..+...+...|++++|...|++..+. .+.+...+..+...+...+++++|.+.|+++ ..
T Consensus 95 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 95 QQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999988753 334678888899999999999999999988762 3335667777773444556999999999887 33
Q ss_pred CC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---CCC-----cchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 437 EP-DAVTWRALLGACKVHRN---TDLAICAAKKILNLD---PQD-----PGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 437 ~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
.| +...+..+...+...|+ +++|...++++++.. |+. ..+|..++.+|...|++++|.+.+++..+..
T Consensus 172 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 172 KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44 46677778888888888 888999999998865 432 2578889999999999999999999998743
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-11 Score=116.15 Aligned_cols=226 Identities=11% Similarity=-0.010 Sum_probs=176.8
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCCC-CcchHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045672 206 DVFVRSALIDIYAKLGELRNAECVFNEMPTR-DLVVWNSIIGGFAQ----NSDVDEALNLYKRMKRAGFAADQSTLTSVL 280 (643)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 280 (643)
+...+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~---- 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC---- 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH----
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH----
Confidence 5677888999999999999999999887665 56788889999999 999999999999988765 34444
Q ss_pred HHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHh----cC
Q 045672 281 RACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCK----CGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQ----NG 351 (643)
Q Consensus 281 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g 351 (643)
..+..+|.. .+++++|...|++..+ .+..++..+...|.. .|
T Consensus 78 -----------------------------~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 78 -----------------------------HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp -----------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC
T ss_pred -----------------------------HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCccc
Confidence 344455555 6777777777766543 356677778888888 88
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCC
Q 045672 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSH----AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR----AGK 423 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~ 423 (643)
++++|++.|++..+.+ +...+..+...+.. .+++++|...|+...+. .+...+..+..+|.+ .++
T Consensus 129 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCC
T ss_pred CHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcc
Confidence 8899999998888765 45566667777776 88999999999888773 345677788888888 899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCc
Q 045672 424 LQEAVKLIHEMPYEPDAVTWRALLGACKV----HRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 424 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
+++|.+.+++.-...+...+..+...+.. .+++++|+..++++.+.+|+++
T Consensus 202 ~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 202 FKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 99999998876222346677777888888 8999999999999999988653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-11 Score=111.02 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=133.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 045672 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCM 414 (643)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 414 (643)
++..|..+...|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4567778888888888888888888888774 34 4667777888888888888888888888763 33456677777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhH
Q 045672 415 IDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492 (643)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 492 (643)
...+...+++++|.+.+.+. ...| +...|..+...+...|++++|+..++++++.+|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 78888888888888888776 2233 566788888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 045672 493 VAEVRKTMRAR 503 (643)
Q Consensus 493 a~~~~~~m~~~ 503 (643)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999988764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-12 Score=131.53 Aligned_cols=286 Identities=13% Similarity=0.031 Sum_probs=217.2
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-C----cchHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CH
Q 045672 206 DVFVRSALIDIYAKLGELRNAECVFNEMPT--R-D----LVVWNSIIGGFAQNSDVDEALNLYKRMKRA----GFAA-DQ 273 (643)
Q Consensus 206 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 273 (643)
....+..+...+...|++++|...|++..+ + + ..+|..+...|...|++++|+..|++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344555677888999999999999987653 2 3 246888889999999999999999887542 2222 24
Q ss_pred HHHHHHHHHHhcCChhHhHHHHHHHHhh-cC--Cc----hhHHhHHHHHHHhcCC--------------------HHHHH
Q 045672 274 STLTSVLRACTGLALLELGTQVHVHVLK-YD--HD----LILNNALLDMYCKCGS--------------------LEDAM 326 (643)
Q Consensus 274 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~--~~----~~~~~~Li~~y~~~g~--------------------~~~A~ 326 (643)
.++..+...+...|+++.|...+..+.+ .+ .+ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 4677777888899999999999999887 11 11 4477888999999999 99999
Q ss_pred HHHhhcCC-----C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHH
Q 045672 327 SVFSRMIQ-----K----DVISWSTMISGLAQNGYSQEALKLFESMKVSRI-KPN----YITIVGVLFACSHAGFVEDGW 392 (643)
Q Consensus 327 ~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~ 392 (643)
..|++... . ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 88877632 1 234788888999999999999999998765210 122 336778888899999999999
Q ss_pred HHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 045672 393 NHFKSMKKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM----PYEPD----AVTWRALLGACKVHRNTDLAI 460 (643)
Q Consensus 393 ~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~ 460 (643)
..++...+...-.++ ...+..+...|.+.|++++|.+.+++. +..++ ..++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999988753211112 457888999999999999999998876 11122 446778888899999999999
Q ss_pred HHHHHHHhcCC------CCcchHHHHHHHHHccCChh
Q 045672 461 CAAKKILNLDP------QDPGTYILLSNIYANSQKWD 491 (643)
Q Consensus 461 ~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 491 (643)
..+++++++.+ ....++..++.+|...|+..
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99999987632 23557788888888888764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.4e-12 Score=134.47 Aligned_cols=206 Identities=12% Similarity=0.013 Sum_probs=169.1
Q ss_pred HhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCH-HHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045672 290 ELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSL-EDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMK 364 (643)
Q Consensus 290 ~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~-~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 364 (643)
+.+.+.+....+ .+.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444 334556677777888888888 888888887632 356788889999999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc--------CCHHHH
Q 045672 365 VSRIKPNYITIVGVLFACSHA---------GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA--------GKLQEA 427 (643)
Q Consensus 365 ~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A 427 (643)
+. .|+...+..+...+... |++++|...|++..+. .+.+...|..+..+|... |++++|
T Consensus 165 ~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 165 TH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp TT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 74 57778888888889998 9999999999999873 234577888999999988 999999
Q ss_pred HHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHH
Q 045672 428 VKLIHEM-PYEP----DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKT 499 (643)
Q Consensus 428 ~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 499 (643)
.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999887 3345 6778999999999999999999999999999999999999999999999999999876543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-09 Score=117.26 Aligned_cols=425 Identities=8% Similarity=0.016 Sum_probs=276.0
Q ss_pred CcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCC---hhHHHH
Q 045672 54 DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL---LEEAQV 130 (643)
Q Consensus 54 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~ 130 (643)
...+.+..|++.+... +-|..+|..++..+.+.+.++.++.+|+.++.. ++.....|..-+..-.+.|. .+.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 4556666677776655 568999999999999999999999999999987 45677788888888888888 999999
Q ss_pred HHccCCC-----CCcchHHHHHHHHHhCCCh----hH----HHHHHHHHHH-CCC-CCCh-hhHHHHHHHHhchhhHHHH
Q 045672 131 LFDQMPE-----RNVVSWTTMISAYCDAKMN----DK----ALELLIFMLR-EGV-RPNM-FTYSAVLRACDSLIILRQL 194 (643)
Q Consensus 131 ~f~~m~~-----~~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~~-~t~~~ll~a~~~~~~~~~~ 194 (643)
+|++... +++..|...+....+.++. ++ ..++|++.+. .|. .|+. ..|...+.-....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~------ 198 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHW------ 198 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTC------
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhc------
Confidence 9997764 6677788777665554443 22 3466666543 344 4432 2333322211100
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-C--Cc-chHH---HHHHHH----------HhCCChhHH
Q 045672 195 HCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT-R--DL-VVWN---SIIGGF----------AQNSDVDEA 257 (643)
Q Consensus 195 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~--~~-~~~~---~li~~~----------~~~g~~~~A 257 (643)
.+. .-+-..++++.+.++|++... | +. .+|. ...... -...+++.|
T Consensus 199 ---------~~~--------~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~A 261 (679)
T 4e6h_A 199 ---------KPV--------NKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNA 261 (679)
T ss_dssp ---------CCC--------SHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHH
T ss_pred ---------ccc--------CcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHH
Confidence 000 000112234445555544432 1 00 1111 111110 001133445
Q ss_pred HHHHHHHHH--cCCC---------------C-----CH---HHHHHHHHHHhcCC-------hhHhHHHHHHHHhh-cCC
Q 045672 258 LNLYKRMKR--AGFA---------------A-----DQ---STLTSVLRACTGLA-------LLELGTQVHVHVLK-YDH 304 (643)
Q Consensus 258 ~~~~~~m~~--~g~~---------------p-----~~---~t~~~ll~a~~~~~-------~~~~a~~i~~~~~~-~~~ 304 (643)
...+.++.. .++. | +. ..|...+.---..+ ..+....++++++. .+.
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~ 341 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF 341 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC
Confidence 555544332 1111 1 00 12333332222211 12345667888888 777
Q ss_pred chhHHhHHHHHHHhcCCHHHHH-HHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC
Q 045672 305 DLILNNALLDMYCKCGSLEDAM-SVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSR---------IKPN 371 (643)
Q Consensus 305 ~~~~~~~Li~~y~~~g~~~~A~-~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~p~ 371 (643)
...+|-..+..+...|+.++|. .+|++... .+...|-..+...-+.|++++|.++|+++.... -.|+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 8889999999999999999996 99988743 355668888888899999999999999987631 0142
Q ss_pred ------------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHhC--CC
Q 045672 372 ------------YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG-KLQEAVKLIHEM--PY 436 (643)
Q Consensus 372 ------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~ 436 (643)
...|...+....+.|+.+.|+.+|..+.+.. ..+....|...+.+-.+.| +.+.|.++|+.. ..
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 2357777777778899999999999998731 1223445554444444554 489999999877 23
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 437 EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ---DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 437 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
..+...|...+......|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 346677888888888899999999999999998873 44577788888889999999999999998754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-11 Score=120.23 Aligned_cols=216 Identities=14% Similarity=0.036 Sum_probs=177.8
Q ss_pred hcCChhHhHHHHHHHHhhc-----CCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHH
Q 045672 284 TGLALLELGTQVHVHVLKY-----DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQE 355 (643)
Q Consensus 284 ~~~~~~~~a~~i~~~~~~~-----~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 355 (643)
...|+++.|...+..+.+. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 4568899999999999883 23567888999999999999999999998743 467899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 045672 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM- 434 (643)
Q Consensus 356 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 434 (643)
|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+. .|+..........+.+.|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998853 335778889999999999999999999999874 455555555556667889999999999765
Q ss_pred C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 435 P-YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ----DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 435 ~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
. ..++...|. ++..+...++.++|...++++++..|. ++..+..++.+|...|++++|.+.+++..+..
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 2 223434443 666778888999999999999887663 36789999999999999999999999998754
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-11 Score=124.72 Aligned_cols=226 Identities=11% Similarity=0.094 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCC-HHHHHHHHhhcCC---CChhhHHHHHHHH
Q 045672 273 QSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGS-LEDAMSVFSRMIQ---KDVISWSTMISGL 347 (643)
Q Consensus 273 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~-~~~A~~~~~~m~~---~~~~~~~~li~~~ 347 (643)
...+..+..++...|+++.|...+..+++ .+.+..+|+.+...|.+.|+ +++|...|++... .+...|+.+..++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34566677778889999999999999999 66678899999999999997 9999999998853 4677999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-cCCHHH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR-AGKLQE 426 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~ 426 (643)
...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++.+. -+-+...|+.+..+|.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999853 335778889999999999999999999999984 23467889999999999 666577
Q ss_pred H-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccC---------
Q 045672 427 A-----VKLIHEM-PYEP-DAVTWRALLGACKVHR--NTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ--------- 488 (643)
Q Consensus 427 A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 488 (643)
| ++.|++. ...| +...|..+...+...| ++++|+..++++ +.+|+++.++..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4667665 3445 5678988888888888 689999999998 889999999999999999875
Q ss_pred ChhHHHHHHHHH-Hh
Q 045672 489 KWDEVAEVRKTM-RA 502 (643)
Q Consensus 489 ~~~~a~~~~~~m-~~ 502 (643)
..++|.++++++ .+
T Consensus 333 ~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 333 ILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 358999999998 54
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-11 Score=126.53 Aligned_cols=264 Identities=12% Similarity=0.033 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC--C-Cc----chHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHH
Q 045672 209 VRSALIDIYAKLGELRNAECVFNEMPT--R-DL----VVWNSIIGGFAQNSDVDEALNLYKRMKRA----GFAA-DQSTL 276 (643)
Q Consensus 209 ~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~ 276 (643)
.+..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++..+. +-.| ....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344567788999999999999988754 2 32 46888899999999999999999987653 1122 34567
Q ss_pred HHHHHHHhcCChhHhHHHHHHHHhhc-------CCchhHHhHHHHHHHhcCC-----------------HHHHHHHHhhc
Q 045672 277 TSVLRACTGLALLELGTQVHVHVLKY-------DHDLILNNALLDMYCKCGS-----------------LEDAMSVFSRM 332 (643)
Q Consensus 277 ~~ll~a~~~~~~~~~a~~i~~~~~~~-------~~~~~~~~~Li~~y~~~g~-----------------~~~A~~~~~~m 332 (643)
..+...+...|+++.|...+..+.+. +....++..+...|...|+ +++|...|++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 77888889999999999999998871 1224577888999999999 99999888776
Q ss_pred CC-------C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 045672 333 IQ-------K--DVISWSTMISGLAQNGYSQEALKLFESMKVSRI-KPN----YITIVGVLFACSHAGFVEDGWNHFKSM 398 (643)
Q Consensus 333 ~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~ 398 (643)
.+ + ....|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...++..
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 32 1 234788888999999999999999998865311 112 236778888999999999999999988
Q ss_pred HHhcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045672 399 KKFYGIDP----GREHYSCMIDLLGRAGKLQEAVKLIHEM-PY---EPD----AVTWRALLGACKVHRNTDLAICAAKKI 466 (643)
Q Consensus 399 ~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~ 466 (643)
.+...-.. ....+..+...|.+.|++++|.+.+++. .. .++ ..++..+...+...|++++|...++++
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 76321111 1457888999999999999999999876 11 112 346777888899999999999999999
Q ss_pred HhcCCC
Q 045672 467 LNLDPQ 472 (643)
Q Consensus 467 ~~~~p~ 472 (643)
+++.+.
T Consensus 370 l~~~~~ 375 (411)
T 4a1s_A 370 LQLAXX 375 (411)
T ss_dssp HHHCCH
T ss_pred HHHHhh
Confidence 987663
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-11 Score=120.80 Aligned_cols=262 Identities=13% Similarity=0.046 Sum_probs=197.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC--C-C----cchHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHH
Q 045672 211 SALIDIYAKLGELRNAECVFNEMPT--R-D----LVVWNSIIGGFAQNSDVDEALNLYKRMKRA----GFAA-DQSTLTS 278 (643)
Q Consensus 211 ~~li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ 278 (643)
......+...|++++|...|++..+ + + ...|..+...|...|++++|++.+++.... +..| ...++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3456678899999999999988643 2 3 356788899999999999999999887542 2122 2456777
Q ss_pred HHHHHhcCChhHhHHHHHHHHhh-c--CCc----hhHHhHHHHHHHhcCC--------------------HHHHHHHHhh
Q 045672 279 VLRACTGLALLELGTQVHVHVLK-Y--DHD----LILNNALLDMYCKCGS--------------------LEDAMSVFSR 331 (643)
Q Consensus 279 ll~a~~~~~~~~~a~~i~~~~~~-~--~~~----~~~~~~Li~~y~~~g~--------------------~~~A~~~~~~ 331 (643)
+...+...|+++.|...+..+.+ . ..+ ..++..+...|...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 78888899999999999999887 1 111 3477888899999999 9999988877
Q ss_pred cCC-----C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHH
Q 045672 332 MIQ-----K----DVISWSTMISGLAQNGYSQEALKLFESMKVSRI-KPN----YITIVGVLFACSHAGFVEDGWNHFKS 397 (643)
Q Consensus 332 m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~ 397 (643)
... . ....+..+...+...|++++|++.+++..+... .++ ..++..+...+...|++++|...++.
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 632 1 234678888899999999999999998764210 112 33677788889999999999999998
Q ss_pred hHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045672 398 MKKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM----PYEPD----AVTWRALLGACKVHRNTDLAICAAKK 465 (643)
Q Consensus 398 ~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~ 465 (643)
..+...-.++ ...+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 8753211122 457788899999999999999998876 11122 34677788889999999999999999
Q ss_pred HHhcCCC
Q 045672 466 ILNLDPQ 472 (643)
Q Consensus 466 ~~~~~p~ 472 (643)
++++.+.
T Consensus 329 a~~~~~~ 335 (338)
T 3ro2_A 329 HLEISRE 335 (338)
T ss_dssp HHHC---
T ss_pred HHHHHHh
Confidence 9987664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=7.4e-10 Score=109.54 Aligned_cols=216 Identities=10% Similarity=0.050 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-------cCChh-------HhHHHHHHHHhh-cCC-chhHHhHHHHHHHh
Q 045672 255 DEALNLYKRMKRAGFAADQSTLTSVLRACT-------GLALL-------ELGTQVHVHVLK-YDH-DLILNNALLDMYCK 318 (643)
Q Consensus 255 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~i~~~~~~-~~~-~~~~~~~Li~~y~~ 318 (643)
++|...|++..... +-+...|......+. ..|+. ++|..+++++++ +.| +..+|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777776642 234455555555443 24554 777777777777 444 34577778888888
Q ss_pred cCCHHHHHHHHhhcCC--C-Chh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHHH
Q 045672 319 CGSLEDAMSVFSRMIQ--K-DVI-SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFAC-SHAGFVEDGWN 393 (643)
Q Consensus 319 ~g~~~~A~~~~~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~ 393 (643)
.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887743 2 233 67777777888888888888888887643 23334444333222 23688888888
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045672 394 HFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-P---YEP--DAVTWRALLGACKVHRNTDLAICAAKKIL 467 (643)
Q Consensus 394 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 467 (643)
+|+...+. .+.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88887764 2335667777788888888888888888776 1 244 35577777777777888888888888888
Q ss_pred hcCCCCc
Q 045672 468 NLDPQDP 474 (643)
Q Consensus 468 ~~~p~~~ 474 (643)
+..|+++
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8887654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-10 Score=105.60 Aligned_cols=168 Identities=11% Similarity=0.070 Sum_probs=142.0
Q ss_pred CchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045672 304 HDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380 (643)
Q Consensus 304 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 380 (643)
.+..+|..|...|.+.|++++|...|++..+ .+..+|..+...|.+.|++++|+..+++..... +-+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3566788999999999999999999998743 367789999999999999999999999988753 334566777778
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 045672 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDL 458 (643)
Q Consensus 381 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 458 (643)
.+...++++.+...+....+. .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888999999999999998873 3446778889999999999999999999887 3344 56789999999999999999
Q ss_pred HHHHHHHHHhcCCCCc
Q 045672 459 AICAAKKILNLDPQDP 474 (643)
Q Consensus 459 a~~~~~~~~~~~p~~~ 474 (643)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.1e-11 Score=129.99 Aligned_cols=162 Identities=20% Similarity=0.236 Sum_probs=138.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHH
Q 045672 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSC 413 (643)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 413 (643)
+..+|+.+...|.+.|++++|++.|++.++. .|+ ..++..+..++.+.|++++|+..|++..+. .| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3557888888888999999999999888874 555 677888888889999999999999888873 34 4678888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChh
Q 045672 414 MIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 491 (643)
+..+|.+.|++++|++.|++. .+.| +...|..+...+...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999998877 4445 46689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 045672 492 EVAEVRKTMRA 502 (643)
Q Consensus 492 ~a~~~~~~m~~ 502 (643)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.7e-10 Score=112.75 Aligned_cols=211 Identities=10% Similarity=0.025 Sum_probs=172.7
Q ss_pred HhHHHHHHHHhh-cCCchhHHhHHHHHHH-------hcCCH-------HHHHHHHhhcCC---C-ChhhHHHHHHHHHhc
Q 045672 290 ELGTQVHVHVLK-YDHDLILNNALLDMYC-------KCGSL-------EDAMSVFSRMIQ---K-DVISWSTMISGLAQN 350 (643)
Q Consensus 290 ~~a~~i~~~~~~-~~~~~~~~~~Li~~y~-------~~g~~-------~~A~~~~~~m~~---~-~~~~~~~li~~~~~~ 350 (643)
+.|..+++++++ .+.+..+|..++..+. +.|++ ++|..+|++... | +...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 677788899988 7778888988888876 35885 899999998754 3 556899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH-hcCCHHHH
Q 045672 351 GYSQEALKLFESMKVSRIKPNY-I-TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG-RAGKLQEA 427 (643)
Q Consensus 351 g~~~~A~~l~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A 427 (643)
|++++|.++|++..+ +.|+. . .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|++++|
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998 45653 3 7888888999999999999999999873 2344555554444432 36999999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-CcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 428 VKLIHEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNL---DPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 428 ~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
.++|++. ... .+...|..++..+...|++++|..+|+++++. .|+ ....|..++..+.+.|+.++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999887 222 36778999999999999999999999999995 453 56688899999999999999999999998
Q ss_pred hCC
Q 045672 502 ARG 504 (643)
Q Consensus 502 ~~g 504 (643)
+..
T Consensus 269 ~~~ 271 (308)
T 2ond_A 269 TAF 271 (308)
T ss_dssp HHT
T ss_pred HHc
Confidence 754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-10 Score=103.83 Aligned_cols=161 Identities=16% Similarity=0.027 Sum_probs=103.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 045672 340 WSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLG 419 (643)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 419 (643)
|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444455555555555555555554321 223444555555555566666666666655542 2234455666666666
Q ss_pred hcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHH
Q 045672 420 RAGKLQEAVKLIHEM-P-YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVR 497 (643)
Q Consensus 420 ~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 497 (643)
..|++++|.+.++++ . .+.+...|..+...+...|++++|...++++++..|.++.++..++.+|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666655 1 12355667777777888888888888888888888888888888888888888888888888
Q ss_pred HHHHhC
Q 045672 498 KTMRAR 503 (643)
Q Consensus 498 ~~m~~~ 503 (643)
++..+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 877653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-10 Score=118.16 Aligned_cols=283 Identities=10% Similarity=0.014 Sum_probs=192.6
Q ss_pred HHHcCCHHHHHHHHhhCCC--------CCcchHHHHHHH--HHhCCChhHHH-----------HHHHHHHHcCCCCCHHH
Q 045672 217 YAKLGELRNAECVFNEMPT--------RDLVVWNSIIGG--FAQNSDVDEAL-----------NLYKRMKRAGFAADQST 275 (643)
Q Consensus 217 y~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~g~~p~~~t 275 (643)
+.+.+++++|..+++++.+ +++..|-.++.. ....+..+.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 4567888888888776532 233333333322 11122333333 5565554421 11111
Q ss_pred HH------HHHHHHhcCChhHhHHHHHHHHhhc----CC---chhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----C--
Q 045672 276 LT------SVLRACTGLALLELGTQVHVHVLKY----DH---DLILNNALLDMYCKCGSLEDAMSVFSRMIQ-----K-- 335 (643)
Q Consensus 276 ~~------~ll~a~~~~~~~~~a~~i~~~~~~~----~~---~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-----~-- 335 (643)
+. .....+...|+++.|...+..+.+. +. ...++..+...|...|++++|...+++..+ +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 11 2445567789999999999988871 22 236778888999999999999888877632 1
Q ss_pred ---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CC
Q 045672 336 ---DVISWSTMISGLAQNGYSQEALKLFESMKVSRI-KPN----YITIVGVLFACSHAGFVEDGWNHFKSMKKFY---GI 404 (643)
Q Consensus 336 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~ 404 (643)
...+++.+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|.+.+++..+-. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 134788888999999999999999988764211 122 2467788888999999999999998887621 23
Q ss_pred -CCChHHHHHHHHHHHhcCCHHHHHHHHHhC-C---C--CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCC
Q 045672 405 -DPGREHYSCMIDLLGRAGKLQEAVKLIHEM-P---Y--EPD-AVTWRALLGACKVHRN---TDLAICAAKKILNLDPQD 473 (643)
Q Consensus 405 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~ 473 (643)
+....++..+...|.+.|++++|.+.+++. . . .|. ...+..+...+...|+ .++|+..+++. ...|..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~ 338 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADL 338 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHH
Confidence 223567888999999999999999998876 1 1 122 2234556666778888 77777777766 233445
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 474 PGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 474 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
...+..++.+|...|++++|.+.+++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788999999999999999999998864
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.2e-09 Score=107.16 Aligned_cols=223 Identities=11% Similarity=0.033 Sum_probs=147.6
Q ss_pred HHHhcCChhHhHHHHHHHHhh---cCCc----hhHHhHHHHHHHhcCCHHHHHHHHhhcCC----------C-ChhhHHH
Q 045672 281 RACTGLALLELGTQVHVHVLK---YDHD----LILNNALLDMYCKCGSLEDAMSVFSRMIQ----------K-DVISWST 342 (643)
Q Consensus 281 ~a~~~~~~~~~a~~i~~~~~~---~~~~----~~~~~~Li~~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~ 342 (643)
..+...|+++.|...+..+.+ -..+ ......+...|...|++++|...+++... + ....+..
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 140 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH
Confidence 334444555555555555444 0111 12245566777788888888887776522 1 1235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH-----H
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIK--P--NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS-----C 413 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~ 413 (643)
+...+...|++++|...+++....... + ...++..+...+...|++++|...++.......-......+. .
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 220 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 220 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 777888889999999999887653211 1 234566777788888999999999988765322111111121 2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----C-cchHHHHH
Q 045672 414 MIDLLGRAGKLQEAVKLIHEMP-YEPD-----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQ-----D-PGTYILLS 481 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~ 481 (643)
.+..+...|++++|...+++.. ..|. ...+..+...+...|++++|...++++++..+. + ..++..++
T Consensus 221 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la 300 (373)
T 1hz4_A 221 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3345778999999999998872 2221 235667777888999999999999998775432 1 23677889
Q ss_pred HHHHccCChhHHHHHHHHHHhC
Q 045672 482 NIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 482 ~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
.+|...|+.++|...+++..+.
T Consensus 301 ~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 301 QLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999999887653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-11 Score=119.93 Aligned_cols=53 Identities=13% Similarity=-0.017 Sum_probs=29.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+...+.+.++...+++.....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445555566666666666677777777888888888888888888777654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-10 Score=116.26 Aligned_cols=227 Identities=9% Similarity=-0.007 Sum_probs=156.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcCChhHhHHHHHHHHhh---cCC-----chhHHh
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRA----GFAA-DQSTLTSVLRACTGLALLELGTQVHVHVLK---YDH-----DLILNN 310 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~---~~~-----~~~~~~ 310 (643)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+..+.+ ..+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334445556666666666655442 1011 123445555555566666666666666555 111 124567
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 045672 311 ALLDMYCKCGSLEDAMSVFSRMIQ-----KD----VISWSTMISGLAQNGYSQEALKLFESMKVS----RIKPN-YITIV 376 (643)
Q Consensus 311 ~Li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~ 376 (643)
.+...|...|++++|...|++..+ .+ ..+|+.+...|...|++++|++.|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 778888888999888888877632 11 237888889999999999999999988662 33243 56788
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhc---CCCCChHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 045672 377 GVLFACSHAGFVEDGWNHFKSMKKFY---GIDPGREHYSCMIDLLGRAGK---LQEAVKLIHEMPYEPDAV-TWRALLGA 449 (643)
Q Consensus 377 ~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~-~~~~ll~~ 449 (643)
.+...+...|++++|...+++..+.. +.+.....+..+...|...|+ +++|..++++.+..|+.. .+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 88889999999999999998876531 111223346678888889999 999999999986555443 56677788
Q ss_pred HHHcCCHHHHHHHHHHHHhcC
Q 045672 450 CKVHRNTDLAICAAKKILNLD 470 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~ 470 (643)
+...|++++|...+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.9e-10 Score=112.12 Aligned_cols=298 Identities=12% Similarity=0.032 Sum_probs=200.2
Q ss_pred CCchhHHHHHHHHH--HHcCCHHHHHHHHhhCCC--------CCcchHHHHHHHH--HhCCChhHHH---------HHHH
Q 045672 204 ESDVFVRSALIDIY--AKLGELRNAECVFNEMPT--------RDLVVWNSIIGGF--AQNSDVDEAL---------NLYK 262 (643)
Q Consensus 204 ~~~~~~~~~li~~y--~~~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~--~~~g~~~~A~---------~~~~ 262 (643)
.|+..+.+.|-.-| .+.+++++|.++++++.. .++..|-.++..- ...+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45555666666666 788999999888876532 2333334333321 1112222222 5555
Q ss_pred HHHHcCCCCCH-H---HHHHHHHHHhcCChhHhHHHHHHHHhh-c---CC---chhHHhHHHHHHHhcCCHHHHHHHHhh
Q 045672 263 RMKRAGFAADQ-S---TLTSVLRACTGLALLELGTQVHVHVLK-Y---DH---DLILNNALLDMYCKCGSLEDAMSVFSR 331 (643)
Q Consensus 263 ~m~~~g~~p~~-~---t~~~ll~a~~~~~~~~~a~~i~~~~~~-~---~~---~~~~~~~Li~~y~~~g~~~~A~~~~~~ 331 (643)
.+.....+.+. . .+......+...|+++.|...+..+.+ . +. ...++..+...|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55432111111 1 122233445688999999999999987 1 11 245778889999999999999888877
Q ss_pred cCC-----C-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHH
Q 045672 332 MIQ-----K-----DVISWSTMISGLAQNGYSQEALKLFESMKVS----RIKP-NYITIVGVLFACSHAGFVEDGWNHFK 396 (643)
Q Consensus 332 m~~-----~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~ 396 (643)
..+ + ...+++.+...|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|.+.|+
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 621 1 2347888999999999999999999887652 1111 13467778888999999999999999
Q ss_pred HhHHhc---CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHcCC---HHHHHHHH
Q 045672 397 SMKKFY---GIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM----PY--EPD-AVTWRALLGACKVHRN---TDLAICAA 463 (643)
Q Consensus 397 ~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~ 463 (643)
+..+.. +.+....++..+...|.+.|++++|.+.+++. +. .|. ...+..+...+...++ +++|+..+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 887611 22233667888999999999999999999876 11 233 2345555555677777 77777777
Q ss_pred HHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 464 KKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 464 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
++. ...|.....+..++..|...|++++|.+.+++..+
T Consensus 327 ~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 762 22233455778999999999999999999988764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-09 Score=98.81 Aligned_cols=167 Identities=12% Similarity=0.010 Sum_probs=142.0
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 383 (643)
..+..+...|...|++++|...|+++.+. +...|..+...+...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34567788899999999999999998543 56788889999999999999999999998753 345778888888999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHH
Q 045672 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY-EPDAVTWRALLGACKVHRNTDLAIC 461 (643)
Q Consensus 384 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~ 461 (643)
..|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. ..+...|..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999874 3456788899999999999999999999887 22 2356788899999999999999999
Q ss_pred HHHHHHhcCCCCcch
Q 045672 462 AAKKILNLDPQDPGT 476 (643)
Q Consensus 462 ~~~~~~~~~p~~~~~ 476 (643)
.++++++..|+++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999998877643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-09 Score=101.75 Aligned_cols=202 Identities=12% Similarity=0.062 Sum_probs=140.6
Q ss_pred CCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cC-CchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHH
Q 045672 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK-YD-HDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMIS 345 (643)
Q Consensus 271 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~-~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~ 345 (643)
.|+..+......+...|++++|...+..+.+ .+ ++...+..+...|.+.|++++|...|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3556777777778888888888888888888 44 6666666788888888888888888887743 24557778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---hHHHHHH
Q 045672 346 GLAQNGYSQEALKLFESMKVSRIKPN-Y-------ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG---REHYSCM 414 (643)
Q Consensus 346 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 414 (643)
.|...|++++|+..|++..+. .|+ . ..+..+...+...|++++|.+.|+.+.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 888888888888888888764 344 3 3466666677788888888888888765 3454 4566667
Q ss_pred HHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 045672 415 IDLLGRAGKL--QEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484 (643)
Q Consensus 415 i~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 484 (643)
...|...|+. ++|..+ . ..+...+.... ....+.+++|+..++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7777665543 222211 1 12333343332 33456679999999999999999887777666554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-09 Score=102.88 Aligned_cols=186 Identities=10% Similarity=-0.047 Sum_probs=87.8
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQ----KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFA 381 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 381 (643)
..+..+...|.+.|++++|...|++..+ ++...|..+..++...|++++|++.|++..+. .|+ ...+..+...
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHH
Confidence 4444455555555555555555554421 33444444555555555555555555555542 232 3344445555
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGR-------EHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD---AVTWRALLGAC 450 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~ 450 (643)
+...|++++|...++...+. .+.+. ..|..+...+.+.|++++|.+.|++. ...|+ ...|..+...+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 55555555555555555442 11122 23444444455555555555555444 33343 12333333333
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
.. .+...++++..+.+.++..|..+ .....+.+++|...+++..+.
T Consensus 164 ~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 22 22333444444444333222222 222334458999999888764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.9e-10 Score=115.92 Aligned_cols=190 Identities=11% Similarity=-0.027 Sum_probs=86.6
Q ss_pred CcchHHHHHHHHHhCCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHH
Q 045672 237 DLVVWNSIIGGFAQNSDV-DEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDM 315 (643)
Q Consensus 237 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~ 315 (643)
+...|..+...|...|++ ++|++.|++..+.. +-+...+..+..++...|++++|...+..+.+..|+...+..+...
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~ 179 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMV 179 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344555555555666666 66666666555532 1123444444444444444444444444444433333444444444
Q ss_pred HHhc---------CCHHHHHHHHhhcCC---CChhhHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCC----C
Q 045672 316 YCKC---------GSLEDAMSVFSRMIQ---KDVISWSTMISGLAQN--------GYSQEALKLFESMKVSRIKP----N 371 (643)
Q Consensus 316 y~~~---------g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p----~ 371 (643)
|... |++++|...|++..+ .+...|..+..+|... |++++|++.|++..+. .| +
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 257 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSN 257 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGC
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccC
Confidence 4444 444444444444321 2333444444444444 4444444444444442 22 3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 045672 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 431 (643)
...+..+..++...|++++|.+.|++..+. .+.+...+..+..++...|++++|.+.+
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444431 1112333444444444444444444433
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-10 Score=113.63 Aligned_cols=234 Identities=13% Similarity=0.046 Sum_probs=130.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC--------C---CcchHHHHHHHHHhCCChhHHHHHHHHHHHc------CC
Q 045672 207 VFVRSALIDIYAKLGELRNAECVFNEMPT--------R---DLVVWNSIIGGFAQNSDVDEALNLYKRMKRA------GF 269 (643)
Q Consensus 207 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 269 (643)
..++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|+..|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45566677777777888877777776543 1 2345666777777777777777777766543 11
Q ss_pred CCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC-----------CChh
Q 045672 270 AADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ-----------KDVI 338 (643)
Q Consensus 270 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-----------~~~~ 338 (643)
.|. ...++..+...|...|++++|...|++..+ ....
T Consensus 107 ~~~--------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 107 HPA--------------------------------VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp CHH--------------------------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ChH--------------------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 111 122334444555555555555555544421 1223
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc------CCC
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVS------RIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFY------GID 405 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~ 405 (643)
.|..+...|...|++++|++.|+++... +..|+ ..++..+...+...|++++|...++.+.+.. ...
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4555666666666666666666665542 11222 3345556666666677777776666665420 001
Q ss_pred C-------ChHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 406 P-------GREHYSCMIDLLGRAGKLQEAVKLIHEMP-YEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 406 p-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
+ ....+..+...+...+.+.+|...+.... ..| +..+|..+...+...|++++|...+++++++.|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 12234444555666777777777777763 233 3457888888899999999999999999988764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-08 Score=104.40 Aligned_cols=223 Identities=11% Similarity=0.100 Sum_probs=147.8
Q ss_pred HHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCChhHhHHHHHHHHhh-c--CC-----chhHHhHHH
Q 045672 247 GFAQNSDVDEALNLYKRMKRAGF-AAD----QSTLTSVLRACTGLALLELGTQVHVHVLK-Y--DH-----DLILNNALL 313 (643)
Q Consensus 247 ~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~--~~-----~~~~~~~Li 313 (643)
.+...|++++|+..|++..+... .++ ..++..+..++...|+++.|...+..+.+ . .+ ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34445555555555555443210 011 22344444455555555555555555554 1 01 123556777
Q ss_pred HHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 045672 314 DMYCKCGSLEDAMSVFSRMIQ-----KD----VISWSTMISGLAQNGYSQEALKLFESMKVS----RIKPNYITIVGVLF 380 (643)
Q Consensus 314 ~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll~ 380 (643)
..|...|++++|...|++..+ .+ ..+++.+...|...|++++|++.|++.... +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 888888888888888776632 11 246778888899999999999999887661 22223667788888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHHHHHc
Q 045672 381 ACSHAGFVEDGWNHFKSMKKFYGI---DPGREHYSCMIDLLGRAGK---LQEAVKLIHEMPYEPDAV-TWRALLGACKVH 453 (643)
Q Consensus 381 a~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~-~~~~ll~~~~~~ 453 (643)
.+.+.|++++|...+++..+...- +.....+..+...|...|+ +.+|...+++.+..|+.. .+..+...+...
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHC
Confidence 999999999999999988774222 1123456667777778888 899999999875544433 556677889999
Q ss_pred CCHHHHHHHHHHHHhc
Q 045672 454 RNTDLAICAAKKILNL 469 (643)
Q Consensus 454 g~~~~a~~~~~~~~~~ 469 (643)
|++++|...++++++.
T Consensus 350 g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 350 CHFEQAAAFYRKVLKA 365 (378)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.7e-08 Score=99.28 Aligned_cols=258 Identities=10% Similarity=-0.002 Sum_probs=183.4
Q ss_pred HHHHHHHcCCHHHHHHHHhhCC----CCCc----chHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCH----HHHHHH
Q 045672 213 LIDIYAKLGELRNAECVFNEMP----TRDL----VVWNSIIGGFAQNSDVDEALNLYKRMKRAGF-AADQ----STLTSV 279 (643)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~l 279 (643)
+...+...|++++|...+++.. ..+. .+++.+...+...|++++|...+++...... .++. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4456778899999999887642 2222 2466677888889999999999988765311 1122 234566
Q ss_pred HHHHhcCChhHhHHHHHHHHhh-c---C----C-chhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C------ChhhHHH
Q 045672 280 LRACTGLALLELGTQVHVHVLK-Y---D----H-DLILNNALLDMYCKCGSLEDAMSVFSRMIQ--K------DVISWST 342 (643)
Q Consensus 280 l~a~~~~~~~~~a~~i~~~~~~-~---~----~-~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~------~~~~~~~ 342 (643)
...+...|+++.|...+..+.+ . . + ....+..+...|...|++++|...+++... + ...+|..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6778889999999999999887 1 1 2 234567788899999999999999987621 1 2346777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHhccCCHHHHHHHHHHhHHhcCCCC---ChHHHHH
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIKPN-YITIV-----GVLFACSHAGFVEDGWNHFKSMKKFYGIDP---GREHYSC 413 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~-----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~ 413 (643)
+...+...|++++|...+++.....-.++ ...+. ..+..+...|+.++|...++..... ...+ ....+..
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHH
Confidence 88889999999999999998865321221 11121 2234467899999999999887652 2111 1224677
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-------CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 414 MIDLLGRAGKLQEAVKLIHEM-------PYEPDAV-TWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m-------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
+...+...|++++|.+.+++. +..++.. .+..+..++...|+.++|...++++++..+
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 888999999999999998876 1111222 555566778899999999999999987654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3e-09 Score=103.07 Aligned_cols=219 Identities=15% Similarity=0.134 Sum_probs=152.2
Q ss_pred hcCChhHhHHHHHHHHhh-----c----CCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC----------C-ChhhHHHH
Q 045672 284 TGLALLELGTQVHVHVLK-----Y----DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ----------K-DVISWSTM 343 (643)
Q Consensus 284 ~~~~~~~~a~~i~~~~~~-----~----~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~l 343 (643)
...|+++.|...++.+.+ . +....++..+...|...|++++|...|++..+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456788888888888776 1 22356788899999999999999999987732 1 34578888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----CCCC-ChHH
Q 045672 344 ISGLAQNGYSQEALKLFESMKVS------RIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFY-----GIDP-GREH 410 (643)
Q Consensus 344 i~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 410 (643)
...|...|++++|++.|++.... .-.|+ ..++..+...+...|++++|..+++++.+.. +..| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988763 11233 5677788888999999999999999887631 1122 3557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCC
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEMP----------YEPD-AVTWRALLGACKVHRN------TDLAICAAKKILNLDPQD 473 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~ 473 (643)
+..+...|.+.|++++|.+.++++- ..+. ...|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888999999999999999887661 1222 2233333333333222 233333333332333555
Q ss_pred cchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 474 PGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 474 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+.++..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999998875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=9.1e-09 Score=100.75 Aligned_cols=165 Identities=10% Similarity=-0.022 Sum_probs=87.5
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCCC-----C----hhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----HH
Q 045672 309 NNALLDMYCKCGSLEDAMSVFSRMIQK-----D----VISWSTMISGLAQN-GYSQEALKLFESMKVSRIK-PN----YI 373 (643)
Q Consensus 309 ~~~Li~~y~~~g~~~~A~~~~~~m~~~-----~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-p~----~~ 373 (643)
++.+..+|.+.|++++|...|++..+- + ..+|+.+...|... |++++|+..|++..+.... .+ ..
T Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~ 159 (292)
T 1qqe_A 80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 344444444555555554444433210 1 23556666667664 7777777777766542100 01 23
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH------
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR-----EHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAV------ 441 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------ 441 (643)
++..+...+...|++++|...|+...+...-.+.. ..|..+..++...|++++|...+++. .+.|+..
T Consensus 160 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 239 (292)
T 1qqe_A 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN 239 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 45666667777777777777777766531111111 14555666677777777777777665 3334321
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCC
Q 045672 442 TWRALLGACK--VHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 442 ~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
.+..++.++. ..+++++|+..|+++..++|..
T Consensus 240 ~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 240 FLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2333444443 3455777777776666666644
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.7e-09 Score=115.89 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=128.4
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 045672 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLF 380 (643)
Q Consensus 305 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 380 (643)
+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++.++. .|+ ...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 345677788888888888888888887642 35678888888888888888888888888774 455 677888888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 045672 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDL 458 (643)
Q Consensus 381 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 458 (643)
++...|++++|++.|++..+. -+-+...|..+..+|.+.|++++|++.|++. ...| +...|..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 888889999998888888763 2235678888888899999999999888876 4455 45678888888899999999
Q ss_pred HHHHHHHHHhcC
Q 045672 459 AICAAKKILNLD 470 (643)
Q Consensus 459 a~~~~~~~~~~~ 470 (643)
|.+.+++++++.
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999888887654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.5e-08 Score=93.93 Aligned_cols=204 Identities=11% Similarity=0.040 Sum_probs=121.3
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCCC---C---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHHHH
Q 045672 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQK---D---VISWSTMISGLAQNGYSQEALKLFESMKVSRI-KPN-YITIV 376 (643)
Q Consensus 305 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~---~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 376 (643)
+...+..+...+.+.|++++|...|+.+.+. + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3344455555666666666666666665332 2 33455555666666666666666666655321 111 23344
Q ss_pred HHHHHHhc--------cCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 045672 377 GVLFACSH--------AGFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALL 447 (643)
Q Consensus 377 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 447 (643)
.+..++.. .|++++|...|+.+.+. .|+ ......+.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 44445555 56666666666666553 121 11111111110000000 01135566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHcc----------CChhHHHHHHHHHHhCCCCcCCceeEE
Q 045672 448 GACKVHRNTDLAICAAKKILNLDPQDP---GTYILLSNIYANS----------QKWDEVAEVRKTMRARGITKEPGCSWI 514 (643)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~~ 514 (643)
..+...|++++|+..++++++..|+++ .++..++.+|... |++++|...++++.+.. |
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p----- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P----- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T-----
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C-----
Confidence 778999999999999999999999844 4788999999877 89999999999998643 2
Q ss_pred EECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 045672 515 EVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549 (643)
Q Consensus 515 ~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~ 549 (643)
.+|...++...+.++...+.+
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 134556666666666666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-08 Score=99.98 Aligned_cols=227 Identities=12% Similarity=0.066 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-C-hhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcC
Q 045672 256 EALNLYKRMKRAGFAADQSTLTSVLRACTGL-A-LLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMI 333 (643)
Q Consensus 256 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-~-~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~ 333 (643)
+|.+++.+..+. .++....+ .++ ... + +++.|...+..+ ...|...|++++|...|++..
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al 64 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKAA 64 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHH
Confidence 466677766664 23221122 222 221 2 477777766544 556788999999998888763
Q ss_pred C-------C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHhcc-CCHHHHHHHHHHh
Q 045672 334 Q-------K--DVISWSTMISGLAQNGYSQEALKLFESMKVSRI---KPN--YITIVGVLFACSHA-GFVEDGWNHFKSM 398 (643)
Q Consensus 334 ~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~~ 398 (643)
. + ...+|+.+...|...|++++|+..|++...... .+. ..++..+...|... |++++|...|++.
T Consensus 65 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A 144 (292)
T 1qqe_A 65 DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELA 144 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2 1 145889999999999999999999998765211 111 35788888899996 9999999999998
Q ss_pred HHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CH-----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 045672 399 KKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP---DA-----VTWRALLGACKVHRNTDLAICAAKK 465 (643)
Q Consensus 399 ~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~-----~~~~~ll~~~~~~g~~~~a~~~~~~ 465 (643)
.+...-..+ ..++..+...|.+.|++++|.+.|++. ...| +. ..|..+..++...|+++.|+..+++
T Consensus 145 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 763211111 356888999999999999999999887 2222 21 1566777788999999999999999
Q ss_pred HHhcCCCCcch-----HHHHHHHHH--ccCChhHHHHHHHHH
Q 045672 466 ILNLDPQDPGT-----YILLSNIYA--NSQKWDEVAEVRKTM 500 (643)
Q Consensus 466 ~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m 500 (643)
.++++|+.... +..++.+|. ..+++++|.+.++++
T Consensus 225 al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 225 GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp GGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 99999975442 445666665 457788888877544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.94 E-value=9.5e-08 Score=91.96 Aligned_cols=174 Identities=9% Similarity=-0.039 Sum_probs=99.5
Q ss_pred HHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 045672 325 AMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 325 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 400 (643)
|...|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4445554432 334444455666666677777777776665543212 344555556666667777777777776655
Q ss_pred hcCCCC-----ChHHHHHHHHH--HHh--cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 045672 401 FYGIDP-----GREHYSCMIDL--LGR--AGKLQEAVKLIHEM-PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNL- 469 (643)
Q Consensus 401 ~~~~~p-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 469 (643)
. .| +..+...|+.+ ... .+++++|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 44 23333334333 222 23677777777766 22344223333344666777777777777766654
Q ss_pred ---------CCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 470 ---------DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 470 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+|+++.++..++.++...|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 36677777666666666665 677777777653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.5e-08 Score=84.14 Aligned_cols=93 Identities=23% Similarity=0.279 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHcc
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM-P-YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 487 (643)
.+..+...+...|++++|.+.++++ . ...+...|..+...+...|++++|...++++++..|.++..+..++.+|...
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 116 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 116 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 3344444444444444444444443 1 1123445556666666777777777777777777777777777777777777
Q ss_pred CChhHHHHHHHHHHh
Q 045672 488 QKWDEVAEVRKTMRA 502 (643)
Q Consensus 488 g~~~~a~~~~~~m~~ 502 (643)
|++++|.+.++++.+
T Consensus 117 ~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 117 GDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHc
Confidence 777777777777664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.4e-08 Score=95.51 Aligned_cols=163 Identities=13% Similarity=0.058 Sum_probs=97.8
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCC----------C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCC
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQ----------K-DVISWSTMISGLAQNGYSQEALKLFESMKVS------RIK 369 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~ 369 (643)
.++..+...|...|++++|...|++... + ...+|..+...|...|++++|+..|++..+. +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455666666667777777666665521 1 2346777777788888888888888877653 112
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc------CCCCC-hHHHHHHHHHHHhc------CCHHHHHHHHHhCC
Q 045672 370 PN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFY------GIDPG-REHYSCMIDLLGRA------GKLQEAVKLIHEMP 435 (643)
Q Consensus 370 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~------g~~~~A~~~~~~m~ 435 (643)
|+ ..++..+...+...|++++|..+++.+.+.. ...+. ...+..+...+... ..+.++...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 32 4567777788888888888888888776521 11222 22333333333322 23455555555553
Q ss_pred C-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045672 436 Y-EPD-AVTWRALLGACKVHRNTDLAICAAKKILNL 469 (643)
Q Consensus 436 ~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 469 (643)
. .|+ ..++..+...+...|++++|...++++++.
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 232 346778888899999999999999998875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.1e-08 Score=82.82 Aligned_cols=131 Identities=17% Similarity=0.198 Sum_probs=98.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 418 (643)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46667777778888888888888877643 334566777777777888888888888887763 234566777788888
Q ss_pred HhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 419 GRAGKLQEAVKLIHEM-PY-EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 419 ~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
.+.|++++|.+.++++ .. ..+...|..+...+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888776 22 235667888888888899999999999998888775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.1e-08 Score=95.14 Aligned_cols=201 Identities=12% Similarity=0.035 Sum_probs=142.5
Q ss_pred CCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCc---hhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C----ChhhH
Q 045672 271 ADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHD---LILNNALLDMYCKCGSLEDAMSVFSRMIQ--K----DVISW 340 (643)
Q Consensus 271 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~---~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~----~~~~~ 340 (643)
.+...+-.....+...|+++.|...+..+.+ .+.+ ...+..+...|.+.|++++|...|++..+ | ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3556677777888899999999999999999 4444 57788899999999999999999999853 2 23467
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH
Q 045672 341 STMISGLAQ--------NGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYS 412 (643)
Q Consensus 341 ~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 412 (643)
..+..++.. .|++++|+..|++.... .|+.... ..+...+..+... -...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~-------------~~a~~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELV-------------DDATQKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTH-------------HHHHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhH-------------HHHHHHHHHHHHH-----HHHHHH
Confidence 778888888 99999999999999875 4543211 1111111111110 012355
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCcc--
Q 045672 413 CMIDLLGRAGKLQEAVKLIHEM-PYEPD----AVTWRALLGACKVH----------RNTDLAICAAKKILNLDPQDPG-- 475 (643)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~-- 475 (643)
.+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|+..++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6778888899999999888876 22233 34566666777655 8999999999999999998863
Q ss_pred -hHHHHHHHHHccCChh
Q 045672 476 -TYILLSNIYANSQKWD 491 (643)
Q Consensus 476 -~~~~l~~~~~~~g~~~ 491 (643)
+...+..++.+.|+++
T Consensus 233 ~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 233 TAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 3444555555444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-07 Score=88.33 Aligned_cols=179 Identities=12% Similarity=0.018 Sum_probs=114.0
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHH
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQ--KD----VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNY----ITIV 376 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~ 376 (643)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3445566677778888888888887743 22 235666777788888888888888887764 3332 1333
Q ss_pred HHHHHHhc------------------cCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 045672 377 GVLFACSH------------------AGFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGKLQEAVKLIHEMPYE 437 (643)
Q Consensus 377 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (643)
.+..++.. .|+.++|...|+.+.+. .|+ ...+.+...+ +......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH---------
Confidence 33333332 34566666666665542 222 1111111100 0000000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHccCChhHHHHHHHHHHhCCC
Q 045672 438 PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP---GTYILLSNIYANSQKWDEVAEVRKTMRARGI 505 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 505 (643)
......+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112345568899999999999999999999875 5789999999999999999999999987654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-07 Score=89.55 Aligned_cols=239 Identities=8% Similarity=-0.007 Sum_probs=160.1
Q ss_pred HHHcCCHHHHHHHHhhCCCCCc-chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHH
Q 045672 217 YAKLGELRNAECVFNEMPTRDL-VVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQV 295 (643)
Q Consensus 217 y~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 295 (643)
..-.|++..+..-...+...+. ..---+..+|...|+++.. ..-.|....+..+..-+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 3446777777775555543222 2222345677777776532 11233332333322222 222 4455
Q ss_pred HHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045672 296 HVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK-----DVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369 (643)
Q Consensus 296 ~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 369 (643)
++.... -.++......+..+|...|++++|.+++.+.... +...+-.++..+.+.|+.+.|.+.+++|.+. .
T Consensus 89 l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~ 166 (310)
T 3mv2_B 89 LENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--I 166 (310)
T ss_dssp HHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 555544 2344455567888999999999999999987433 4567778889999999999999999999874 6
Q ss_pred C-----CHHHHHHHHHHH--hccC--CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC---
Q 045672 370 P-----NYITIVGVLFAC--SHAG--FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PY--- 436 (643)
Q Consensus 370 p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~--- 436 (643)
| +..+...+..++ ...| +..+|..+|+++... .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 7 466666777663 3334 899999999999764 455334444555899999999999998765 21
Q ss_pred -------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 045672 437 -------EP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 437 -------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 476 (643)
.| |..+...++......|+ +|.++++++.+..|+++..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 24 45566567666666787 8999999999999999744
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.2e-09 Score=93.40 Aligned_cols=140 Identities=10% Similarity=-0.048 Sum_probs=95.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 045672 346 GLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424 (643)
Q Consensus 346 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 424 (643)
.+...|++++|++.+++.... .|+ ...+..+...|.+.|++++|.+.|++..+. -+-+...|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 334456666666666665432 232 334445666667777777777777776652 223566677777777777777
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHccCC
Q 045672 425 QEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICA-AKKILNLDPQDPGTYILLSNIYANSQK 489 (643)
Q Consensus 425 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 489 (643)
++|...|++. ...| +...|..+...+...|++++|.+. ++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777665 3345 456788888888888888766554 589999999999999888888888775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=8.4e-08 Score=93.48 Aligned_cols=175 Identities=13% Similarity=-0.013 Sum_probs=136.8
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 045672 322 LEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 322 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 400 (643)
.+.....+......+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|...++.+.+
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344445555555455667777888889999999999999998875 45 466777888899999999999999998866
Q ss_pred hcCCCCChHHHHHH-HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--cc
Q 045672 401 FYGIDPGREHYSCM-IDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD--PG 475 (643)
Q Consensus 401 ~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~ 475 (643)
. .|+....... ...+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3 4554433322 23366777788888887776 3334 56788899999999999999999999999999987 78
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 476 TYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 476 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
++..++.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999999998887654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-08 Score=111.83 Aligned_cols=169 Identities=9% Similarity=-0.033 Sum_probs=136.6
Q ss_pred HhcCCHHHHHHHHhhcC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 045672 317 CKCGSLEDAMSVFSRMI-----------QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385 (643)
Q Consensus 317 ~~~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 385 (643)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999988876 3356678888889999999999999999988742 23466788888888999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 045672 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAA 463 (643)
Q Consensus 386 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 463 (643)
|++++|...|++..+. .+.+...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+..+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998873 23356788888999999999999 8888876 3344 5668888888899999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHccCC
Q 045672 464 KKILNLDPQDPGTYILLSNIYANSQK 489 (643)
Q Consensus 464 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 489 (643)
+++++++|++..++..++.+|...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999988899999999877665
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-07 Score=84.97 Aligned_cols=172 Identities=8% Similarity=-0.064 Sum_probs=136.8
Q ss_pred HHHHHhhcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhH
Q 045672 325 AMSVFSRMI-QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAG----FVEDGWNHFKSMK 399 (643)
Q Consensus 325 A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 399 (643)
|.+.|++.. ..++.++..+...|...+++++|++.|++..+.| +...+..+...|.. + +.++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555443 3467788888888888999999999999988865 45666667777777 6 8999999999987
Q ss_pred HhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 045672 400 KFYGIDPGREHYSCMIDLLGR----AGKLQEAVKLIHEMP-YEPD---AVTWRALLGACKV----HRNTDLAICAAKKIL 467 (643)
Q Consensus 400 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 467 (643)
+. .+...+..|..+|.. .+++++|.+.|++.- ..|+ ...+..|...|.. .+++++|+..++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 62 356677788888877 889999999998873 3342 6788888888887 789999999999999
Q ss_pred hcCCCCcchHHHHHHHHHcc-C-----ChhHHHHHHHHHHhCCC
Q 045672 468 NLDPQDPGTYILLSNIYANS-Q-----KWDEVAEVRKTMRARGI 505 (643)
Q Consensus 468 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 505 (643)
+. |.++.++..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66777999999999764 3 89999999999988764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=8.6e-08 Score=103.45 Aligned_cols=160 Identities=9% Similarity=0.011 Sum_probs=124.3
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 045672 319 CGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395 (643)
Q Consensus 319 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 395 (643)
.|++++|...|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998854 356789999999999999999999999998753 334778888999999999999999999
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcC
Q 045672 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVH---RNTDLAICAAKKILNLD 470 (643)
Q Consensus 396 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 470 (643)
++..+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |++++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999874 2345778999999999999999999999887 3334 567888888999999 99999999999999999
Q ss_pred CCCcchHHHHH
Q 045672 471 PQDPGTYILLS 481 (643)
Q Consensus 471 p~~~~~~~~l~ 481 (643)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887776
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.9e-07 Score=90.62 Aligned_cols=220 Identities=12% Similarity=0.026 Sum_probs=153.7
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHh
Q 045672 251 NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFS 330 (643)
Q Consensus 251 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~ 330 (643)
.|++++|.+++++..+.. +.. + +...++++.|...+. .....|...|++++|...|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~-------------~a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYA-------------KAAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHH-------------HHHHHHHHcCCHHHHHHHHH
Confidence 477889999998877642 111 0 111466777666654 34567778899999888887
Q ss_pred hcCCC-----C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCCHHHHHHHHH
Q 045672 331 RMIQK-----D----VISWSTMISGLAQNGYSQEALKLFESMKVSR---IKPN--YITIVGVLFACSHAGFVEDGWNHFK 396 (643)
Q Consensus 331 ~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~ 396 (643)
+..+- + ..+|+.+...|...|++++|+..|++....- -.|. ..++..+...|.. |++++|...|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 76321 1 3478888899999999999999998875421 1222 3567778888888 99999999999
Q ss_pred HhHHhcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 045672 397 SMKKFYGIDP----GREHYSCMIDLLGRAGKLQEAVKLIHEM----PYEPD----AVTWRALLGACKVHRNTDLAICAAK 464 (643)
Q Consensus 397 ~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~ 464 (643)
+..+.+.-.. ...++..+...|.+.|++++|.+.|++. +..++ ...+..+...+...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8876321111 1457888899999999999999999876 11122 2255666667778899999999999
Q ss_pred HHHhcCCCCcch-----HHHHHHHHHccCChhHHHHH
Q 045672 465 KILNLDPQDPGT-----YILLSNIYANSQKWDEVAEV 496 (643)
Q Consensus 465 ~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 496 (643)
+++ +.|....+ ...++.+| ..|+.+.+.++
T Consensus 220 ~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 220 ESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999 88875432 44555555 56776666553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-07 Score=84.94 Aligned_cols=76 Identities=11% Similarity=0.004 Sum_probs=59.4
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 427 AVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD--PGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 427 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|...+++...
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 34444443 2234 46778888888899999999999999999998864 55889999999999999999998887653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.3e-07 Score=99.87 Aligned_cols=188 Identities=13% Similarity=0.048 Sum_probs=145.1
Q ss_pred hcCChhHhHHHHHHHHh--------h-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcC
Q 045672 284 TGLALLELGTQVHVHVL--------K-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNG 351 (643)
Q Consensus 284 ~~~~~~~~a~~i~~~~~--------~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g 351 (643)
...|++++|.+.++.+. + .+.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 66778888888888887 5 455667788889999999999999999998853 36778999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 045672 352 YSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKL 430 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 430 (643)
++++|++.|++..+. .| +...+..+..++.+.|++++ .+.|+++.+. -+.+...|..+..+|.+.|++++|.+.
T Consensus 482 ~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 482 DYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp CHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999885 45 46778888899999999999 9999999873 234677899999999999999999999
Q ss_pred HHhC-CCCCCH-HHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCCCcch
Q 045672 431 IHEM-PYEPDA-VTWRALLGACKVHRN-----TDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 431 ~~~m-~~~p~~-~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 476 (643)
|+++ ...|+. ..|..+..++...++ .+...++.+.+..+.+.++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 9998 566764 467777777655554 344444455555555554443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.8e-07 Score=99.45 Aligned_cols=146 Identities=10% Similarity=-0.038 Sum_probs=93.1
Q ss_pred CChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045672 286 LALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFE 361 (643)
Q Consensus 286 ~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 361 (643)
.|++++|...++.+.+ .+.+...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3567777777777777 455567777778888888888888888877643 245677777778888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 045672 362 SMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA---GKLQEAVKLIHEM 434 (643)
Q Consensus 362 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 434 (643)
+..+.. +.+...+..+..++...|++++|.+.+++..+. .+.+...+..+...+... |++++|.+.+++.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 777642 233567777777778888888888888877763 233466777777777777 8888888777765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.5e-08 Score=85.76 Aligned_cols=121 Identities=15% Similarity=0.051 Sum_probs=100.5
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 045672 379 LFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRN 455 (643)
Q Consensus 379 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 455 (643)
...+...|++++|+..+..... ..| +...+..+...|.+.|++++|.+.|++. ...| +..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3455677889999998887754 234 3445677899999999999999999987 4445 57789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHH-HHHHHh
Q 045672 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEV-RKTMRA 502 (643)
Q Consensus 456 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 502 (643)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765 477665
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.68 E-value=6e-06 Score=86.68 Aligned_cols=79 Identities=9% Similarity=-0.024 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCC-hhHHHHHHccCCC------CCcchHHHHHHHHH----hCCCh
Q 045672 88 HAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSL-LEEAQVLFDQMPE------RNVVSWTTMISAYC----DAKMN 156 (643)
Q Consensus 88 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~f~~m~~------~~~~~~~~li~~~~----~~g~~ 156 (643)
++++.+.++|+..+.. .|+...|...+..-.+.++ .+....+|+.... .+...|...+..+. .+|+.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 5677777777777663 3566666666655544442 2334444443221 24455666555433 23456
Q ss_pred hHHHHHHHHHHH
Q 045672 157 DKALELLIFMLR 168 (643)
Q Consensus 157 ~~A~~~~~~m~~ 168 (643)
+.+..+|++.+.
T Consensus 106 ~~vR~iy~rAL~ 117 (493)
T 2uy1_A 106 EKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 677777877775
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.7e-07 Score=83.46 Aligned_cols=126 Identities=8% Similarity=0.010 Sum_probs=92.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 421 (643)
+...|.+.|++++|+..|++..+. .| +...+..+...+...|++++|...|++..+. -+.+...+..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 788888899999999999988874 44 4677888888888999999999999988873 233567788888877665
Q ss_pred CC--HHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 422 GK--LQEAVKLIHEMPYEPDAV--TWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 422 g~--~~~A~~~~~~m~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
|. .+++...++... .|+.. .|..+..++...|++++|+..+++++++.|++
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 345566666653 34433 34444555667889999999999999999863
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.7e-07 Score=81.15 Aligned_cols=102 Identities=10% Similarity=-0.013 Sum_probs=88.4
Q ss_pred CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 045672 403 GIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYIL 479 (643)
Q Consensus 403 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 479 (643)
.+.| +...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3444 3556777888889999999999999887 3344 67789999999999999999999999999999999999999
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCC
Q 045672 480 LSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 480 l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
++.+|...|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998743
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.62 E-value=6.6e-07 Score=83.60 Aligned_cols=181 Identities=12% Similarity=-0.023 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhcCChhHhHHHHHHHHhhc-CCc---hhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CC-h---hhHHH
Q 045672 273 QSTLTSVLRACTGLALLELGTQVHVHVLKY-DHD---LILNNALLDMYCKCGSLEDAMSVFSRMIQ--KD-V---ISWST 342 (643)
Q Consensus 273 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~---~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~-~---~~~~~ 342 (643)
...+-.....+...|+++.|...+..+.+. +.+ ...+..+...|.+.|++++|...|++..+ |+ . ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667788899999999999999983 333 35677889999999999999999999843 22 2 14555
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 045672 343 MISGLAQ------------------NGYSQEALKLFESMKVSRIKPNYI-TIVGVLFACSHAGFVEDGWNHFKSMKKFYG 403 (643)
Q Consensus 343 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 403 (643)
+..++.. .|+.++|+..|+++++. .|+.. ....... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555554 57899999999999874 46533 2211110 001111111
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 404 IDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDA----VTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 404 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
.....+...|.+.|++++|...|+++ ...|+. ..+..+..++.+.|+.++|+..++++....|++.
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 12235677889999999999999887 223432 4677888899999999999999999998888764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=4e-07 Score=76.26 Aligned_cols=108 Identities=14% Similarity=-0.003 Sum_probs=64.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACK 451 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 451 (643)
.+......+.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444455555566666666666555542 2234455555566666666666666665554 2223 3456666666677
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 045672 452 VHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 483 (643)
..|++++|+..++++++++|+++.++..|.++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 77777777777777777777776666655543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.61 E-value=4.9e-06 Score=81.17 Aligned_cols=160 Identities=9% Similarity=-0.026 Sum_probs=110.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHH
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSR-IKPNYI----TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG----REHYSC 413 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 413 (643)
.+..+...|++++|..++++..... ..|+.. .+..+...+...|++++|...|+.+.+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556677777777777777776532 122211 2223555566667888888888777762111222 235777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 045672 414 MIDLLGRAGKLQEAVKLIHEMP-------Y-EPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQD------PGTYI 478 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~-------~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 478 (643)
+...|...|++++|.+.++++- . .+. ..++..+...|...|++++|+..+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7888888888888887776651 1 122 2367788888999999999999999998765332 56899
Q ss_pred HHHHHHHccCC-hhHHHHHHHHHHh
Q 045672 479 LLSNIYANSQK-WDEVAEVRKTMRA 502 (643)
Q Consensus 479 ~l~~~~~~~g~-~~~a~~~~~~m~~ 502 (643)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988763
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=8.7e-07 Score=81.73 Aligned_cols=123 Identities=15% Similarity=0.062 Sum_probs=91.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcC
Q 045672 377 GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGACKVHR 454 (643)
Q Consensus 377 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g 454 (643)
.+...+...|++++|...|+.. +.|+...+..+...|.+.|++++|.+.+++. ... .+...|..+...+...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 3444555666666666666544 2345566666666777777777777766655 222 35567788888888899
Q ss_pred CHHHHHHHHHHHHhcCCCCc----------------chHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 455 NTDLAICAAKKILNLDPQDP----------------GTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 455 ~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
++++|+..++++++..|.+. .++..++.+|...|++++|.+.+++..+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999888776 889999999999999999999999998754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.5e-07 Score=80.46 Aligned_cols=156 Identities=8% Similarity=-0.016 Sum_probs=109.9
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhc
Q 045672 309 NNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFA-CSH 384 (643)
Q Consensus 309 ~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~ 384 (643)
...+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34556677788888888888888754 25567888888888888888888888887654 3343322221111 112
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 045672 385 AGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD---AVTWRALLGACKVHRNTDLAI 460 (643)
Q Consensus 385 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a~ 460 (643)
.+...+|...++...+. .+.+...+..+...|...|++++|.+.|+++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233467777777763 2335778888888999999999999988876 44453 557888888899999999999
Q ss_pred HHHHHHHh
Q 045672 461 CAAKKILN 468 (643)
Q Consensus 461 ~~~~~~~~ 468 (643)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-07 Score=81.64 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 484 (643)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556777888899999999999999877 3334 6778888888999999999999999999999999999999999999
Q ss_pred HccCChhHHHHHHHHHHhC
Q 045672 485 ANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 485 ~~~g~~~~a~~~~~~m~~~ 503 (643)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-06 Score=79.51 Aligned_cols=144 Identities=8% Similarity=-0.124 Sum_probs=91.7
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 045672 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389 (643)
Q Consensus 310 ~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 389 (643)
..+...|...|++++|...|++...++...|..+...|...|++++|++.|++..... +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3455566677777777777777766666677777777777777777777777766542 233555666666666677777
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 390 DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD-AVTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 390 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
+|...|+...+...-.+... +...| +...|+ ...|..+...+...|++++|...++++++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77776666655211000000 00000 012232 35677778888899999999999999999
Q ss_pred cCCCC
Q 045672 469 LDPQD 473 (643)
Q Consensus 469 ~~p~~ 473 (643)
..|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 99876
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.58 E-value=4.6e-06 Score=87.55 Aligned_cols=368 Identities=9% Similarity=-0.054 Sum_probs=179.4
Q ss_pred cC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC--CCcchHHHHHHHHHhCCC-hhHHHHH
Q 045672 87 RH-AVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE--RNVVSWTTMISAYCDAKM-NDKALEL 162 (643)
Q Consensus 87 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~-~~~A~~~ 162 (643)
.| ++..|+.+++.++..- |. |+.+.+..+|++... |++..|...+....+.+. .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 3777788887776642 22 889999999987765 788888888877766653 3445666
Q ss_pred HHHHHHC-CCCC-ChhhHHHHHHHHhc----hhhHH---HHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhC
Q 045672 163 LIFMLRE-GVRP-NMFTYSAVLRACDS----LIILR---QLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEM 233 (643)
Q Consensus 163 ~~~m~~~-g~~p-~~~t~~~ll~a~~~----~~~~~---~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 233 (643)
|+..+.. |..| +...|...+.-+.. .+..+ .+++..++.....-..+|......-. ......+.++
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~---- 145 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKI---- 145 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHH----
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHH----
Confidence 6665543 4333 33444444433221 12222 34444443111100111111111000 0001111111
Q ss_pred CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC--C-----hhHhHHHHHHHHhh-cCCc
Q 045672 234 PTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGL--A-----LLELGTQVHVHVLK-YDHD 305 (643)
Q Consensus 234 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--~-----~~~~a~~i~~~~~~-~~~~ 305 (643)
+.... +.+..|..+++.+...-...+...|...+.--... + ..+.+..+++.++. .+..
T Consensus 146 -----------~~~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~ 212 (493)
T 2uy1_A 146 -----------VGDTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYA 212 (493)
T ss_dssp -----------HHHHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -----------HHHHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCC
Confidence 11110 12223333333332210001122333333222111 0 12345566666666 5566
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCC-CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCC---C
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQ-KDV-ISWSTMISGLAQNGYSQEALKLFESMKVS---------RIKP---N 371 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~-~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------g~~p---~ 371 (643)
..+|-..+..+.+.|+.+.|..+|++... |+. ..|. .|+...+.++. ++.+.+. +..+ .
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~ 285 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKEL 285 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhccccc
Confidence 66777777777777777887777776532 221 1222 12221111111 2222111 0001 1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 045672 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG-KLQEAVKLIHEM--PYEPDAVTWRALLG 448 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~ 448 (643)
...|...+....+.+..+.|..+|+.+ +. . ..+...|...+..-.+.+ +.+.|.++|+.. ....+...|...+.
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid 362 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 234555555555667788888888877 32 1 123344443333333333 578888888765 12123445666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 449 ACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
-....|+.+.|..+++++ +.....+...+..-...|+.+.+.++++++.+
T Consensus 363 ~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 667788888888888886 23445666666666777888888887777663
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.7e-06 Score=84.07 Aligned_cols=159 Identities=7% Similarity=-0.007 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--CChhhH-HHHHHHHH
Q 045672 273 QSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--KDVISW-STMISGLA 348 (643)
Q Consensus 273 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~~~~~-~~li~~~~ 348 (643)
...+..+...+...|+++.|...++.+.+ .+.+...+..|...|.+.|++++|...|+++.. |+.... ......+.
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 33444444555555666666666666655 444455566666666667777777777666643 222211 11122244
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 045672 349 QNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428 (643)
Q Consensus 349 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 428 (643)
+.++.++|+..|++..... +.+...+..+...+...|++++|...|..+.+...-..+...+..++..|...|+.++|.
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 5555555666666655532 223455555566666666666666666666553111111344555555555555555555
Q ss_pred HHHH
Q 045672 429 KLIH 432 (643)
Q Consensus 429 ~~~~ 432 (643)
..++
T Consensus 276 ~~~r 279 (287)
T 3qou_A 276 SXYR 279 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.8e-05 Score=74.59 Aligned_cols=222 Identities=8% Similarity=0.008 Sum_probs=115.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCC--hhHhHHHHHHHHhh-cCCchhHHhHHHHHH----Hhc---C
Q 045672 252 SDVDEALNLYKRMKRAGFAADQS-TLTSVLRACTGLA--LLELGTQVHVHVLK-YDHDLILNNALLDMY----CKC---G 320 (643)
Q Consensus 252 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~--~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y----~~~---g 320 (643)
...++|++++..++.. .|+.. .++.--.++...+ +++++...+..+.. .+.+..+|+.--..+ .+. +
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 3345677777776663 34333 3444444444444 55555555555555 333444444332222 333 5
Q ss_pred CHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------HH
Q 045672 321 SLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQ--EALKLFESMKVSRIKPNYITIVGVLFACSHAGF------VE 389 (643)
Q Consensus 321 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~ 389 (643)
+++++...++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|..-.....+.+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 66666666666633 34455655555556666665 6777777776643 2344455544444444444 56
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045672 390 DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE-AVKLIHEM-PY----EPDAVTWRALLGACKVHRNTDLAICAA 463 (643)
Q Consensus 390 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~ 463 (643)
++++.++.+... .+-|...|+-+-..+.+.|+..+ +.++..+. .. ..+...+..+...+.+.|+.++|.+++
T Consensus 204 eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 666666665552 23345555555555555555333 33344443 11 124455555555555666666666666
Q ss_pred HHHHh-cCCCCcchHH
Q 045672 464 KKILN-LDPQDPGTYI 478 (643)
Q Consensus 464 ~~~~~-~~p~~~~~~~ 478 (643)
+.+.+ .+|.+...|.
T Consensus 282 ~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHHTTCGGGHHHHH
T ss_pred HHHHhccChHHHHHHH
Confidence 66654 4555544443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.57 E-value=9.8e-06 Score=78.69 Aligned_cols=211 Identities=12% Similarity=0.102 Sum_probs=165.2
Q ss_pred hHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcC--CHHHHHHHHhhcCC---CChhhHHHHHHHH----Hhc---CCHHH
Q 045672 289 LELGTQVHVHVLK-YDHDLILNNALLDMYCKCG--SLEDAMSVFSRMIQ---KDVISWSTMISGL----AQN---GYSQE 355 (643)
Q Consensus 289 ~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~----~~~---g~~~~ 355 (643)
.++|......++. .+.+..+|+.--..+...| +++++.+.++.+.. ++...|+.--..+ ... +++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 3577888888888 5556677888888888888 99999999998854 3555777655555 555 78999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC------HHHH
Q 045672 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE--DGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK------LQEA 427 (643)
Q Consensus 356 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A 427 (643)
++++++++.+.. +-|...|..-...+.+.|.++ +++++++.+.+. -+-+...|+.-..++.+.|+ ++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 999999999853 346777777777777788887 999999999884 34466677666666666676 8999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcC---CCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 428 VKLIHEM-PYE-PDAVTWRALLGACKVHRNT-DLAICAAKKILNLD---PQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 428 ~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
++.++++ ... -|...|+-+-..+...|+. +.....++++.+++ |.++.++..++.+|.+.|+.++|.++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9988876 333 4788899888888888874 44566778887776 8888999999999999999999999999987
Q ss_pred h
Q 045672 502 A 502 (643)
Q Consensus 502 ~ 502 (643)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.56 E-value=2e-06 Score=79.11 Aligned_cols=182 Identities=9% Similarity=0.016 Sum_probs=105.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCC
Q 045672 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQS-TLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGS 321 (643)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~ 321 (643)
.....+.+.|++++|+..|++..+. .|+.. .+.. . .... . ........+.+...|.+.|+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~-~~~~--~-------------~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T-NVDK--N-------------SEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H-HSCT--T-------------SHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h-hhcc--h-------------hhhhHHHHHHHHHHHHHCCC
Confidence 3445566778888888888777764 34322 1111 0 0000 0 00111223446777778888
Q ss_pred HHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC--HHHHHHHH
Q 045672 322 LEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGF--VEDGWNHF 395 (643)
Q Consensus 322 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~~~~ 395 (643)
+++|...|++..+ .+...|..+...|...|++++|+..|++..+. .|+ ..++..+..++...|. .+.+...+
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8888888877632 35667777888888888888888888887774 444 5566666666655443 33344444
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 045672 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLG 448 (643)
Q Consensus 396 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 448 (643)
..... ..|....+..+..++...|++++|...|++. ...|+......+..
T Consensus 148 ~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 148 KKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp C---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44321 1222223334455566678888888888776 56677665554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-06 Score=76.89 Aligned_cols=126 Identities=7% Similarity=-0.011 Sum_probs=87.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHH
Q 045672 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGACKV 452 (643)
Q Consensus 375 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~ 452 (643)
+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ... .+...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444444555566666666666665542 2234556666666677777777777766655 222 345677788888889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHH--HHHccCChhHHHHHHHHHHh
Q 045672 453 HRNTDLAICAAKKILNLDPQDPGTYILLSN--IYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~ 502 (643)
.|++++|...++++++..|.+...+..+.. .+...|++++|.+.++...+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999988877754444 47888999999999887653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-06 Score=72.15 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 045672 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-P-YEPDAVTWRALLGAC 450 (643)
Q Consensus 373 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~ 450 (643)
..+..+...+...|++++|.+.++.+.+. .+.+...+..+...+.+.|++++|...++++ . ...+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34455555556666666666666666552 1234555666666677777777777766665 1 123566777788888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccC
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 488 (643)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999999999988888888888776544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.54 E-value=7e-07 Score=74.72 Aligned_cols=100 Identities=13% Similarity=0.158 Sum_probs=88.7
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 045672 404 IDPG-REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480 (643)
Q Consensus 404 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 480 (643)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4453 346777888999999999999999987 3344 677899999999999999999999999999999999999999
Q ss_pred HHHHHccCChhHHHHHHHHHHhC
Q 045672 481 SNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 481 ~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998863
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-06 Score=82.70 Aligned_cols=164 Identities=9% Similarity=-0.048 Sum_probs=113.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCC--hH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-Y----ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGI--DPG--RE 409 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~ 409 (643)
.+...+..+...|++++|++.+++..+...... . ..+..+...+...|++++|...++...+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667777888888888877766432111 1 12233445566777888888888777642111 111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------Cc
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM----PYEPD-----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQ------DP 474 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 474 (643)
.|+.+...|...|++++|.+.++++ ...|+ ..++..+...|...|++++|+..+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7778888888888888888888765 11122 247778888899999999999999999876432 14
Q ss_pred chHHHHHHHHHccCChhHH-HHHHHHHHh
Q 045672 475 GTYILLSNIYANSQKWDEV-AEVRKTMRA 502 (643)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 502 (643)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777777653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-07 Score=90.14 Aligned_cols=190 Identities=8% Similarity=-0.037 Sum_probs=124.7
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFA 381 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 381 (643)
...+..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|+..+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34456677777888888888888877632 36677888888888888888888888888764 34 45677777888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGR-EHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAI 460 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~ 460 (643)
+...|++++|...|....+. .|+. ..+...+....+..+...... .......++......+ ..+ ..|+.++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 88888888888888877653 1211 111111111111111111111 2222223343333333 333 368899999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHcc-CChhHHHHHHHHHHhC
Q 045672 461 CAAKKILNLDPQDPGTYILLSNIYANS-QKWDEVAEVRKTMRAR 503 (643)
Q Consensus 461 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 503 (643)
+.++++++++|++......+...+.+. +.+++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777777777776 7899999999988753
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.5e-06 Score=72.59 Aligned_cols=117 Identities=12% Similarity=-0.002 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 045672 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGAC 450 (643)
Q Consensus 373 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 450 (643)
..+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34445555556666666666666666552 2234556666666677777777777766655 2223 456777778888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChh
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 491 (643)
...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999998888999999998888753
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.5e-06 Score=74.40 Aligned_cols=96 Identities=16% Similarity=0.024 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445666777888899999999998876 3334 67788888888999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHhC
Q 045672 486 NSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 486 ~~g~~~~a~~~~~~m~~~ 503 (643)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-06 Score=72.93 Aligned_cols=116 Identities=15% Similarity=0.046 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 045672 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGA 449 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~ 449 (643)
...+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. ... .+...|..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344445555555555555555555555441 1224455555666666666666666666554 112 245677777778
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCC
Q 045672 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK 489 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 489 (643)
+...|++++|+..++++++..|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888889999999888888888888888888876653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.4e-07 Score=87.33 Aligned_cols=195 Identities=9% Similarity=-0.011 Sum_probs=148.2
Q ss_pred CChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045672 286 LALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMK 364 (643)
Q Consensus 286 ~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 364 (643)
.|++++|.+++..+.+ .+.. .+...++++.|...|... ...|...|++++|++.|.+..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al 63 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEA 63 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHH
Confidence 5778889999988887 3321 111158888888877653 667889999999999998875
Q ss_pred HC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC--C--ChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 045672 365 VS----RIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID--P--GREHYSCMIDLLGRAGKLQEAVKLIHEM- 434 (643)
Q Consensus 365 ~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p--~~~~~~~li~~~~~~g~~~~A~~~~~~m- 434 (643)
.. |-.+. ..+|..+...|...|++++|...|++..+-+.-. + ...++..+...|.+ |++++|++.|++.
T Consensus 64 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 64 EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 52 21111 4578888889999999999999999876532111 1 13577888889988 9999999999876
Q ss_pred CC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 435 PY---EPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP------GTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 435 ~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
.+ ..+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...+++..
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 11 111 35678888899999999999999999999765543 367778888899999999999999887
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.43 E-value=6.8e-06 Score=80.12 Aligned_cols=162 Identities=7% Similarity=-0.020 Sum_probs=118.4
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCC--C-C------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 045672 308 LNNALLDMYCKCGSLEDAMSVFSRMIQ--K-D------VISWSTMISGLAQNGYSQEALKLFESMKVSRI---KPN--YI 373 (643)
Q Consensus 308 ~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 373 (643)
.+...+..+...|++++|.+.+....+ + . ...+..+...+...|++++|+..|++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344567788899999999988876522 1 1 12344456667788999999999998875321 122 44
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHhC-C------CCCC-H
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG-----REHYSCMIDLLGRAGKLQEAVKLIHEM-P------YEPD-A 440 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~------~~p~-~ 440 (643)
++..+...|...|++++|..+|++..+.....|+ ...+..+...|.+.|++++|.+.+++. . .... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999988732111222 257888999999999999999998876 1 1111 5
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 045672 441 VTWRALLGACKVHRNTDLA-ICAAKKILNL 469 (643)
Q Consensus 441 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 469 (643)
.+|..+...+...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5788888889999999999 7778887753
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-06 Score=85.85 Aligned_cols=144 Identities=10% Similarity=-0.025 Sum_probs=103.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 045672 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415 (643)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 415 (643)
+...|..+...|.+.|++++|+..|++..... |+...+ ..+.+.++- . -....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~-~--------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ-A--------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-H--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-H--------HHHHHHHHHH
Confidence 34466667777777777777777777766532 221100 001111100 0 0135677788
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHH
Q 045672 416 DLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493 (643)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 493 (643)
.+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++..++..++.++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877 3334 5678888889999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHH
Q 045672 494 -AEVRKTMR 501 (643)
Q Consensus 494 -~~~~~~m~ 501 (643)
..+++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 55666664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.1e-07 Score=79.70 Aligned_cols=120 Identities=10% Similarity=0.071 Sum_probs=86.3
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCH--H
Q 045672 383 SHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGA-CKVHRNT--D 457 (643)
Q Consensus 383 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~ 457 (643)
...|++++|...++...+. .+.+...+..+...|...|++++|.+.|++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456667777777766653 2335566777777777777777777777765 2223 55567777777 6778887 8
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 458 LAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 458 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+|+..++++++.+|+++.++..++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 89999999998888888888889999999999999999988887654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-06 Score=71.97 Aligned_cols=96 Identities=20% Similarity=0.137 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777788888888888888776 2233 56788888888899999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHhC
Q 045672 486 NSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 486 ~~g~~~~a~~~~~~m~~~ 503 (643)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999888763
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-05 Score=73.80 Aligned_cols=161 Identities=9% Similarity=-0.089 Sum_probs=121.0
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045672 305 DLILNNALLDMYCKCGSLEDAMSVFSRMIQK-DVISWSTMISGLAQNG----YSQEALKLFESMKVSRIKPNYITIVGVL 379 (643)
Q Consensus 305 ~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll 379 (643)
+...+..|..+|...+++++|...|++..+. +...+..+...|.. + ++++|++.|++..+.| +...+..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3445566777777888888888888877543 66677777777777 6 8999999999987755 556666777
Q ss_pred HHHhc----cCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 045672 380 FACSH----AGFVEDGWNHFKSMKKFYGIDPG---REHYSCMIDLLGR----AGKLQEAVKLIHEM-PYEPDAVTWRALL 447 (643)
Q Consensus 380 ~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~ll 447 (643)
..|.. .+++++|..+|+...+. .|+ ...+..|..+|.. .+++++|.+.|++. ...++...+..|.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg 169 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG 169 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77766 78999999999888762 332 6778888888888 78899999999887 2224555666676
Q ss_pred HHHHHc-C-----CHHHHHHHHHHHHhcCCC
Q 045672 448 GACKVH-R-----NTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 448 ~~~~~~-g-----~~~~a~~~~~~~~~~~p~ 472 (643)
..|... | +.++|+..++++.+.+..
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 666543 3 899999999999887653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.7e-06 Score=68.76 Aligned_cols=98 Identities=13% Similarity=0.082 Sum_probs=81.5
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CcchHHHHHH
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQ--DPGTYILLSN 482 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 482 (643)
+...+..+...+.+.|++++|...+++. ... .+...|..+...+...|++++|+..++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3456667777888888888888888776 222 35667888888899999999999999999999999 8889999999
Q ss_pred HHHcc-CChhHHHHHHHHHHhCC
Q 045672 483 IYANS-QKWDEVAEVRKTMRARG 504 (643)
Q Consensus 483 ~~~~~-g~~~~a~~~~~~m~~~g 504 (643)
+|... |++++|.+.++...+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999999888654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.36 E-value=2.7e-05 Score=75.83 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=62.2
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhhcCC------C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-H
Q 045672 308 LNNALLDMYCKCGSLEDAMSVFSRMIQ------K----DVISWSTMISGLAQNGYSQEALKLFESMKV----SRIKPN-Y 372 (643)
Q Consensus 308 ~~~~Li~~y~~~g~~~~A~~~~~~m~~------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~ 372 (643)
+++.+...|...|++++|...|+++.+ . ...+|..+...|.+.|++++|+..+++..+ .+..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 456666777777777777777766531 1 123667777788888888888888877653 222222 5
Q ss_pred HHHHHHHHHHhccC-CHHHHHHHHHHhHH
Q 045672 373 ITIVGVLFACSHAG-FVEDGWNHFKSMKK 400 (643)
Q Consensus 373 ~t~~~ll~a~~~~g-~~~~a~~~~~~~~~ 400 (643)
.++..+..++.+.| ..++|.+.+++...
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 66777777888888 45888887777654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.2e-06 Score=83.24 Aligned_cols=134 Identities=16% Similarity=0.047 Sum_probs=81.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHH
Q 045672 342 TMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG--REHYSCMIDLLG 419 (643)
Q Consensus 342 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~ 419 (643)
.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHH
Confidence 3455566667777777777666543 344433334444566777777777777644331 1 111 224556667777
Q ss_pred hcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 045672 420 RAGKLQEAVKLIHEMP---YEPD--AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILL 480 (643)
Q Consensus 420 ~~g~~~~A~~~~~~m~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 480 (643)
+.|++++|++.|++.. ..|. ...+.....++...|+.++|...|+++...+|+ ......|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 7777777777777661 1143 235556666778888888888888888888886 5444333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=5e-06 Score=70.29 Aligned_cols=98 Identities=16% Similarity=0.124 Sum_probs=82.7
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 045672 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483 (643)
Q Consensus 406 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 483 (643)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|+..++++++.+|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777888888888888888888776 2233 567788888889999999999999999999999999999999999
Q ss_pred HHccCChhHHHHHHHHHHhC
Q 045672 484 YANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 484 ~~~~g~~~~a~~~~~~m~~~ 503 (643)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.3e-06 Score=70.99 Aligned_cols=94 Identities=19% Similarity=0.123 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHcc
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANS 487 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 487 (643)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999887 3344 6778888888899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 045672 488 QKWDEVAEVRKTMRAR 503 (643)
Q Consensus 488 g~~~~a~~~~~~m~~~ 503 (643)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-05 Score=65.56 Aligned_cols=107 Identities=14% Similarity=0.069 Sum_probs=55.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 045672 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKV 452 (643)
Q Consensus 375 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 452 (643)
+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 333444444445555555555444432 1223444444555555555555555555443 1122 34455556666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 045672 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNI 483 (643)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 483 (643)
.|++++|...++++++.+|+++..+..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6667777777777776666666555555444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.8e-06 Score=74.20 Aligned_cols=127 Identities=10% Similarity=0.071 Sum_probs=92.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HHhcCCH--
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL-LGRAGKL-- 424 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 424 (643)
...|++++|+..+++..... +.+...+..+...+...|++++|...|+...+. .+.+...+..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34677778888888776643 335667777778888888888888888888763 23356677777777 7788887
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 045672 425 QEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477 (643)
Q Consensus 425 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 477 (643)
++|.+.++++ ...| +...|..+...+...|++++|+..++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888776 3334 466788888889999999999999999999999876543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.8e-06 Score=73.84 Aligned_cols=96 Identities=10% Similarity=0.066 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345556666666677777777666665 2223 45566667777777777777777777777777777777777777777
Q ss_pred ccCChhHHHHHHHHHHhC
Q 045672 486 NSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 486 ~~g~~~~a~~~~~~m~~~ 503 (643)
..|++++|.+.+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 777777777777777653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.5e-06 Score=74.94 Aligned_cols=83 Identities=12% Similarity=-0.056 Sum_probs=43.6
Q ss_pred hcCCHHHHHH---HHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccCCHH
Q 045672 318 KCGSLEDAMS---VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKV----SRIKP-NYITIVGVLFACSHAGFVE 389 (643)
Q Consensus 318 ~~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~~ 389 (643)
..|++++|.+ .+..-+......++.+...+...|++++|+..+++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44332223445666666666777777777777666544 11111 1234444555555666666
Q ss_pred HHHHHHHHhHH
Q 045672 390 DGWNHFKSMKK 400 (643)
Q Consensus 390 ~a~~~~~~~~~ 400 (643)
+|.+.+++..+
T Consensus 84 ~A~~~~~~al~ 94 (203)
T 3gw4_A 84 AARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.7e-06 Score=77.63 Aligned_cols=182 Identities=10% Similarity=-0.009 Sum_probs=131.8
Q ss_pred hcCCHHHHHHHHhhcCCC---ChhhHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------
Q 045672 318 KCGSLEDAMSVFSRMIQK---DVISWSTM-------ISGLAQNGYSQEALKLFESMKVSRIKPN---------------- 371 (643)
Q Consensus 318 ~~g~~~~A~~~~~~m~~~---~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~---------------- 371 (643)
..++...|.+.|.++... ....|+.+ ...+...++..+++..++.-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 467778888888777432 34467666 3455555555555555555433 2222
Q ss_pred ------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 045672 372 ------YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDA----V 441 (643)
Q Consensus 372 ------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 441 (643)
......+...+...|++++|.+.|..+... .|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 112234556778899999999999888752 354436666777899999999999999977444433 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-CcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLD--PQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|..+|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 56777788999999999999999998543 54 44578899999999999999999999998743
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=6.1e-06 Score=75.10 Aligned_cols=172 Identities=8% Similarity=-0.092 Sum_probs=102.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 045672 312 LLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFV 388 (643)
Q Consensus 312 Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 388 (643)
.+......|+++++.+.|+.-... ....|..+...+...|++++|+..|++.... .|+...+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~---------- 77 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ---------- 77 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH----------
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh----------
Confidence 333444556666666666543222 3446777777788888888888888887763 2221100000
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045672 389 EDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKI 466 (643)
Q Consensus 389 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 466 (643)
....-.. ......+..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++
T Consensus 78 -----~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 78 -----ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp -----HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000000 001345667777888888888888888776 2233 5667888888899999999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHccCChhHHH-HHHHHHHhCC
Q 045672 467 LNLDPQDPGTYILLSNIYANSQKWDEVA-EVRKTMRARG 504 (643)
Q Consensus 467 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g 504 (643)
++++|+++.++..++.++...|+.+++. ..+..|...|
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999888888776 5566555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.29 E-value=7.1e-06 Score=67.63 Aligned_cols=96 Identities=23% Similarity=0.292 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PY-EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
...+..+...+.+.|++++|.+.++++ .. ..+..+|..+...+...|++++|+..++++++..|+++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999887 22 2467788899999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHhC
Q 045672 486 NSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 486 ~~g~~~~a~~~~~~m~~~ 503 (643)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998864
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.29 E-value=3e-05 Score=70.47 Aligned_cols=125 Identities=14% Similarity=0.061 Sum_probs=72.6
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCC---------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHH
Q 045672 309 NNALLDMYCKCGSLEDAMSVFSRMIQ---------KDVISWSTMISGLAQNGYSQEALKLFESMKVS----RIKP--NYI 373 (643)
Q Consensus 309 ~~~Li~~y~~~g~~~~A~~~~~~m~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p--~~~ 373 (643)
+..+...|...|++++|...|++... .....++.+...|...|++++|++.+++.... +-.| ...
T Consensus 29 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 108 (203)
T 3gw4_A 29 RFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASA 108 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 34555555666666666666655422 12346777777888888888888888776542 1111 133
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHE 433 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 433 (643)
.+..+...+...|++++|...+++..+...-.++ ...+..+...+.+.|++++|.+.+++
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 4556666777778888888777776542111111 12344555556666666666655544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.9e-06 Score=74.43 Aligned_cols=103 Identities=10% Similarity=-0.032 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 045672 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGAC 450 (643)
Q Consensus 373 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 450 (643)
..+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34555566667777777777777776652 2335666677777777777777777777766 2233 456777778888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchH
Q 045672 451 KVHRNTDLAICAAKKILNLDPQDPGTY 477 (643)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~p~~~~~~ 477 (643)
...|++++|+..+++++++.|+++...
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 889999999999999999888877543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=7.1e-06 Score=66.88 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456778888999999999999999887 2234 67788888899999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHhCC
Q 045672 486 NSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 486 ~~g~~~~a~~~~~~m~~~g 504 (643)
..|++++|.+.+++..+.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999988643
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.7e-05 Score=69.40 Aligned_cols=128 Identities=11% Similarity=-0.012 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
..|..+...+...|++++|+..|++..... +.+..++..+...+...|++++|...++...+. .+.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 356666777777788888888887776642 234666667777777788888888888777763 23456677777778
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 418 LGRAGKLQEAVKLIHEM-PYEP-DAVTWR--ALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
+.+.|++++|.+.++++ ...| +...+. .+...+...|++++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888887766 2223 334443 333336677888888888777654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=7.1e-06 Score=68.71 Aligned_cols=118 Identities=8% Similarity=-0.070 Sum_probs=92.7
Q ss_pred CCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHH
Q 045672 35 ITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNI 114 (643)
Q Consensus 35 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 114 (643)
+..+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++... .+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHH
Confidence 34566789999999999999999999999998764 44778888899999999999999999999998753 46677888
Q ss_pred HHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCC
Q 045672 115 LLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAK 154 (643)
Q Consensus 115 li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g 154 (643)
+..+|.+.|++++|.+.|++..+ .+...+..+...+.+.|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 88888888888888888887654 23345555555554433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=1e-05 Score=69.23 Aligned_cols=95 Identities=16% Similarity=0.041 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSN 482 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 482 (643)
...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++++..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 344555555555666666666655554 33444 3455555555666666666666666666666666666666666
Q ss_pred HHHccCChhHHHHHHHHHHh
Q 045672 483 IYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 483 ~~~~~g~~~~a~~~~~~m~~ 502 (643)
+|...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.19 E-value=8.2e-06 Score=68.20 Aligned_cols=94 Identities=4% Similarity=-0.009 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc-------hHHH
Q 045672 409 EHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG-------TYIL 479 (643)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 479 (643)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566778888889999999888876 3344 5667888888999999999999999999998877543 6778
Q ss_pred HHHHHHccCChhHHHHHHHHHHh
Q 045672 480 LSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 480 l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88999999999999999998775
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.6e-05 Score=66.08 Aligned_cols=109 Identities=11% Similarity=-0.061 Sum_probs=68.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACK 451 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 451 (643)
.+..+...+.+.|++++|...|+...+. .+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444445555566666666666655542 2234555666666666666666666666655 2233 4556777777788
Q ss_pred HcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHH
Q 045672 452 VHRNTDLAICAAKKILNLD------PQDPGTYILLSNIY 484 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 484 (643)
..|++++|+..++++++++ |.+......+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888888888888888887 76666665555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.3e-05 Score=65.95 Aligned_cols=111 Identities=11% Similarity=-0.026 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 045672 373 ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRAL 446 (643)
Q Consensus 373 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 446 (643)
..+..+...+...|++++|...|+...+ ..|+ ...+..+...|.+.|++++|.+.+++. ...| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3444444444555555555555554443 2233 345555666666666666666666554 2223 45677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHc
Q 045672 447 LGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486 (643)
Q Consensus 447 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 486 (643)
...+...|++++|...++++++..|++...+..+..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 7888888999999999999999999887777766665543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-05 Score=68.99 Aligned_cols=105 Identities=11% Similarity=-0.025 Sum_probs=69.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACK 451 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 451 (643)
.+..+...+...|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444455566666677776666666652 2234556666667777777777777777665 2223 4456667777788
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 045672 452 VHRNTDLAICAAKKILNLDPQDPGTYILL 480 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 480 (643)
..|++++|+..+++++++.|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 88888888888888888888777554443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00095 Score=65.48 Aligned_cols=173 Identities=10% Similarity=-0.016 Sum_probs=97.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCC-hhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhc-C-
Q 045672 246 GGFAQNSDVDEALNLYKRMKRAGFAAD-QSTLTSVLRACTGLA-LLELGTQVHVHVLK-YDHDLILNNALLDMYCKC-G- 320 (643)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~-~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~-g- 320 (643)
....+.+..++|++++.++... .|+ ...++.--.++...+ .++++......+.+ .+.+..+|+.-.-.+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCC
Confidence 3344455566788888887774 343 333444444444555 46666666666666 455555665555555444 5
Q ss_pred CHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--
Q 045672 321 SLEDAMSVFSRMIQK---DVISWSTMISGLAQNGYSQ--------EALKLFESMKVSRIKPNYITIVGVLFACSHAGF-- 387 (643)
Q Consensus 321 ~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-- 387 (643)
+++++.+.++.+.+. |..+|+--.-.+.+.|..+ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 667777777777554 3445554444444444343 6777777776643 3345566655555555554
Q ss_pred -----HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 045672 388 -----VEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGK 423 (643)
Q Consensus 388 -----~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 423 (643)
++++++.+.++... .+-|...|+-+-..+.+.|+
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 46666666666552 23345555555555555444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.1e-05 Score=68.92 Aligned_cols=108 Identities=10% Similarity=-0.064 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 045672 372 YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGA 449 (643)
Q Consensus 372 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 449 (643)
...+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344555566666667777777777666653 2235566777777777777777777777766 2334 46688888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 045672 450 CKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 481 (643)
+...|++++|+..++++++++|+++..+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999887655444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-05 Score=66.28 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=86.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 484 (643)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999887 2233 6778888889999999999999999999999999999999999999
Q ss_pred HccCChhHHHHHHHHHHhC
Q 045672 485 ANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 485 ~~~g~~~~a~~~~~~m~~~ 503 (643)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998864
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1e-05 Score=69.84 Aligned_cols=98 Identities=9% Similarity=-0.019 Sum_probs=54.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACK 451 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 451 (643)
.+..+...+.+.|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 3344444455555555555555555542 1223445555555555566666666555554 2223 3445666666677
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC
Q 045672 452 VHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
..|++++|+..|++++++.|++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 7777777777777777777654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00045 Score=67.47 Aligned_cols=188 Identities=12% Similarity=0.064 Sum_probs=93.7
Q ss_pred hHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcC--CHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCC-HHHHHHHHH
Q 045672 289 LELGTQVHVHVLK-YDHDLILNNALLDMYCKCG--SLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGY-SQEALKLFE 361 (643)
Q Consensus 289 ~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~ 361 (643)
++.+..++..+.. .+.+..+|+.-.-.+.+.| .++++...++.+.+ +|..+|+--.-.+...|. .+++++.++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3455555555555 4445555555555555555 36666666666633 345566655555556666 467777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcc--------------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc------
Q 045672 362 SMKVSRIKPNYITIVGVLFACSHA--------------GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA------ 421 (643)
Q Consensus 362 ~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~------ 421 (643)
++.+.. +-|...|+.....+.+. +.++++++.+...... .+-|...|+-+-..+.+.
T Consensus 170 ~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 170 SLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCcccc
Confidence 766643 23444454443333322 3355566666655542 223444444443333333
Q ss_pred -----CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 045672 422 -----GKLQEAVKLIHEM-PYEPDAVTWRALLGAC-----KVHRNTDLAICAAKKILNLDPQDPGTYILL 480 (643)
Q Consensus 422 -----g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 480 (643)
+.++++++.++++ ...||. .|..+..+. ...|..++....+.++++++|....-|.-+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 3345555555554 333443 232211111 123455555666666666666554444444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.7e-05 Score=76.71 Aligned_cols=181 Identities=9% Similarity=-0.057 Sum_probs=104.1
Q ss_pred HHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHH
Q 045672 281 RACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEA 356 (643)
Q Consensus 281 ~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A 356 (643)
..+...|+++.|...+..+.+ .+.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|...|++++|
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 91 (281)
T 2c2l_A 12 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEA 91 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 333344444444444444444 233445566777788888888888888887754 2556788888889999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 045672 357 LKLFESMKVSRIKPNY-ITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM- 434 (643)
Q Consensus 357 ~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 434 (643)
+..|++..+. .|+. ..+...+.... ...++.. +..... ...+++......+... ..|++++|.+.+++.
T Consensus 92 ~~~~~~al~l--~p~~~~~~~~~~~~~~---~~~~~~~-~~~~~~-~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al 162 (281)
T 2c2l_A 92 IANLQRAYSL--AKEQRLNFGDDIPSAL---RIAKKKR-WNSIEE-RRIHQESELHSYLTRL--IAAERERELEECQRNH 162 (281)
T ss_dssp HHHHHHHHHH--HHHTTCCCCSHHHHHH---HHHHHHH-HHHHHH-TCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGG
T ss_pred HHHHHHHHHh--CccchhhHHHHHHHHH---HHHHHHH-HHHHHH-HHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhh
Confidence 9999887653 2221 01111111111 1111111 122222 1444555554444433 368899999888776
Q ss_pred CCCCCHHHHH-HHHHHHHHc-CCHHHHHHHHHHHHhcC
Q 045672 435 PYEPDAVTWR-ALLGACKVH-RNTDLAICAAKKILNLD 470 (643)
Q Consensus 435 ~~~p~~~~~~-~ll~~~~~~-g~~~~a~~~~~~~~~~~ 470 (643)
...|+..... .+...+... +.+++|.++|+++.+..
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 163 EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 5567655433 333334444 67888999998887643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.13 E-value=9.8e-06 Score=69.42 Aligned_cols=62 Identities=16% Similarity=0.059 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCcchH----HHHHHHHHccCChhHHHHHHHHHHh
Q 045672 441 VTWRALLGACKVHRNTDLAICAAKKILNL-------DPQDPGTY----ILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 441 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..|..+..++...|++++|+..+++++++ +|++..+| ...+.++...|++++|...|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888899999999999999999998 99999999 9999999999999999999998875
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.8e-05 Score=82.82 Aligned_cols=117 Identities=11% Similarity=0.054 Sum_probs=57.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 045672 313 LDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE 389 (643)
Q Consensus 313 i~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 389 (643)
...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.+++..+.. +-+..++..+..++...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3345556666666666655422 234555666666666666666666666665532 122445555555566666666
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHH--HHhcCCHHHHHHHHH
Q 045672 390 DGWNHFKSMKKFYGIDPGREHYSCMIDL--LGRAGKLQEAVKLIH 432 (643)
Q Consensus 390 ~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 432 (643)
+|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666555421 1122233333333 555555555555554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00025 Score=69.64 Aligned_cols=229 Identities=13% Similarity=0.140 Sum_probs=161.5
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcC-CHHHHHHHHh
Q 045672 253 DVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCG-SLEDAMSVFS 330 (643)
Q Consensus 253 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g-~~~~A~~~~~ 330 (643)
++.+|...++.+.+.+. ..++|.++...++. .+.+..+|+.--..+...| .++++...++
T Consensus 52 ~y~~~~~~~r~~~~~~e------------------~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~ 113 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEE------------------KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMN 113 (349)
T ss_dssp HHHHHHHHHHHHHHTTC------------------CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC------------------CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45566666666665542 23567778888888 5556677887777777788 5999999999
Q ss_pred hcCC---CChhhHHHHHHHHHhc-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHH
Q 045672 331 RMIQ---KDVISWSTMISGLAQN-G-YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVE--------DGWNHFKS 397 (643)
Q Consensus 331 ~m~~---~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~ 397 (643)
.+.. ++..+|+.-.-.+.+. + ++++++++++++.+.. +-|...|..-.....+.|..+ ++++++++
T Consensus 114 ~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k 192 (349)
T 3q7a_A 114 EFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNE 192 (349)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHH
Confidence 8854 3566788777777766 7 8899999999998753 335667766555555555555 88999999
Q ss_pred hHHhcCCCCChHHHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH------------
Q 045672 398 MKKFYGIDPGREHYSCMIDLLGRAGK-------LQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNT------------ 456 (643)
Q Consensus 398 ~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~------------ 456 (643)
+.+. .+-|...|+....++.+.++ ++++++.++++ ...| |...|+-+-..+.+.|+.
T Consensus 193 ~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~ 270 (349)
T 3q7a_A 193 MLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYT 270 (349)
T ss_dssp HHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGT
T ss_pred HHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 9874 34467778877777877776 78888888776 3334 777888877777766654
Q ss_pred --------HHHHHHHHHHHhcC------CCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 457 --------DLAICAAKKILNLD------PQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 457 --------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
........++.... +..+.+...|+++|...|+.++|.++++.+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 271 ASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp C--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22223333332222 45667888999999999999999999999874
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.4e-05 Score=66.62 Aligned_cols=91 Identities=16% Similarity=0.129 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHH
Q 045672 413 CMIDLLGRAGKLQEAVKLIHEM-PYEPDA----VTWRALLGACKVHRNTDLAICAAKKILNLDPQD---PGTYILLSNIY 484 (643)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 484 (643)
.+...+.+.|++++|.+.|++. ...|+. ..+..+...+...|++++|+..++++++..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445566677777777766655 112221 355566666777788888888888888877777 56677788888
Q ss_pred HccCChhHHHHHHHHHHhC
Q 045672 485 ANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 485 ~~~g~~~~a~~~~~~m~~~ 503 (643)
...|++++|...++++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888777653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.08 E-value=2.7e-05 Score=65.66 Aligned_cols=100 Identities=7% Similarity=-0.142 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 045672 371 NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLG 448 (643)
Q Consensus 371 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 448 (643)
+...+..+...+...|++++|...|....+. .+.+...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3455555666666666666666666666552 2234556666666677777777777666655 2223 4557777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 449 ACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
.+...|++++|+..+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 788888888888888888887766
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3.4e-05 Score=80.29 Aligned_cols=144 Identities=10% Similarity=-0.002 Sum_probs=100.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
...|..+...|.+.|++++|+..|++.++. .|+...+ . -+...+ ... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 446777777788888888888888877653 2221100 0 011000 000 11356778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHH
Q 045672 417 LLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 494 (643)
+|.+.|++++|++.++++ ...| +...|..+..++...|++++|+..|+++++++|++..++..++.++.+.|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999888877 3333 56788889999999999999999999999999999999999999999999998876
Q ss_pred H-HHHHHHh
Q 045672 495 E-VRKTMRA 502 (643)
Q Consensus 495 ~-~~~~m~~ 502 (643)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 5555543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.7e-05 Score=78.59 Aligned_cols=188 Identities=7% Similarity=-0.072 Sum_probs=128.7
Q ss_pred HHHhcCCHHHHHHHHhhcCCC-----C---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH
Q 045672 315 MYCKCGSLEDAMSVFSRMIQK-----D---------------VISWSTMISGLAQNGYSQEALKLFESMKVSR-IKPNYI 373 (643)
Q Consensus 315 ~y~~~g~~~~A~~~~~~m~~~-----~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ 373 (643)
.+.+.|++++|.+.|..+.+. + ..++..+...|...|++++|.+.+.++...- -.++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 345667777777777665221 0 1136678888999999999999888765421 112221
Q ss_pred ----HHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC
Q 045672 374 ----TIVGVLFACSHAGFVEDGWNHFKSMKKFY---GIDP-GREHYSCMIDLLGRAGKLQEAVKLIHEM-------PYEP 438 (643)
Q Consensus 374 ----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p 438 (643)
..+.+-..+...|+.+++..++....... +..+ ...++..+...|...|++++|..++++. ..+|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 22223334456788999988887765421 2222 2457788899999999999999988765 1123
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC----cchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 439 D-AVTWRALLGACKVHRNTDLAICAAKKILNLD---PQD----PGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 439 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
. ..++..++..|...|++++|...+++++... +.+ ...+..++..+...|++++|...+.+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 3467778888999999999999999988653 222 24567788888999999999988877754
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.9e-05 Score=65.70 Aligned_cols=95 Identities=8% Similarity=0.056 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------cchHHH
Q 045672 409 EHYSCMIDLLGRAGKLQEAVKLIHEM-PY-EPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD-------PGTYIL 479 (643)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 479 (643)
..+..+...+...|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45666777788888888888888776 22 2356678888888889999999999999999887765 778999
Q ss_pred HHHHHHccCChhHHHHHHHHHHhC
Q 045672 480 LSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 480 l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
++.+|...|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999998864
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.4e-05 Score=83.78 Aligned_cols=116 Identities=7% Similarity=-0.005 Sum_probs=81.1
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 045672 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDL 458 (643)
Q Consensus 381 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 458 (643)
.+.+.|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 345566777777777766653 2234566777777777777777777777665 3334 45677777788888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHH--HHccCChhHHHHHHH
Q 045672 459 AICAAKKILNLDPQDPGTYILLSNI--YANSQKWDEVAEVRK 498 (643)
Q Consensus 459 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 498 (643)
|+..+++++++.|++..++..++.+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888888888888777 778888888888876
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.03 E-value=4.4e-06 Score=68.68 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHH
Q 045672 421 AGKLQEAVKLIHEM-PY---EPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAE 495 (643)
Q Consensus 421 ~g~~~~A~~~~~~m-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 495 (643)
.|++++|+..|++. .. .|+ ...|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666666665 33 232 34566677777778888888888888888888887788888888888888888888
Q ss_pred HHHHHHhC
Q 045672 496 VRKTMRAR 503 (643)
Q Consensus 496 ~~~~m~~~ 503 (643)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87777653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00085 Score=65.48 Aligned_cols=178 Identities=12% Similarity=0.098 Sum_probs=129.3
Q ss_pred HHHHHHHHhhcC---CCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHH
Q 045672 322 LEDAMSVFSRMI---QKDVISWSTMISGLAQNG--YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF-VEDGWNHF 395 (643)
Q Consensus 322 ~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 395 (643)
++++...++.+. .++..+|+.-.-.+.+.| .+++++++++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777764 346678888777777877 4899999999999864 4466777776667777787 68999999
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc------
Q 045672 396 KSMKKFYGIDPGREHYSCMIDLLGRA--------------GKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVH------ 453 (643)
Q Consensus 396 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~------ 453 (643)
..+.+. .+-|...|+....++.+. +.++++++.+++. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999884 344666776666665554 4588899888877 2334 677887655554444
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHH---HccCChhHHHHHHHHHHh
Q 045672 454 -----RNTDLAICAAKKILNLDPQDPGTYILLSNIY---ANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 454 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~ 502 (643)
+.++++++.++++++++|++...+..++... ...|..+++...+.++++
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4578999999999999999865554444322 246778888888888875
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.01 E-value=5.8e-05 Score=62.64 Aligned_cols=105 Identities=10% Similarity=0.019 Sum_probs=54.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----C-CCCC----HHHHHHHHH
Q 045672 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM----P-YEPD----AVTWRALLG 448 (643)
Q Consensus 378 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~-~~p~----~~~~~~ll~ 448 (643)
+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|...++++ + ..++ ..+|..+..
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 333334444444444444444331 1223334444444444445555544444443 1 0112 445666667
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 449 ACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
.+...|++++|...++++++..| ++.....+..+..
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 77777888888888888887777 4555555554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.01 E-value=5.5e-05 Score=75.20 Aligned_cols=139 Identities=9% Similarity=-0.008 Sum_probs=88.7
Q ss_pred CChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-C---------------hhhHHHHHHH
Q 045672 286 LALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--K-D---------------VISWSTMISG 346 (643)
Q Consensus 286 ~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~---------------~~~~~~li~~ 346 (643)
+++++.|...+....+ .+.+...+..+...|.+.|++++|...|++... | + ...|..+..+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4455566655555555 334567888999999999999999999998732 2 2 3566667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 045672 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 426 (643)
|.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...|+.+.+. .+.+...+..+..++.+.|+.++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766642 223555666666666666666666666666552 12234445555555555555555
Q ss_pred H
Q 045672 427 A 427 (643)
Q Consensus 427 A 427 (643)
|
T Consensus 283 a 283 (336)
T 1p5q_A 283 R 283 (336)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.1e-05 Score=62.33 Aligned_cols=98 Identities=12% Similarity=-0.028 Sum_probs=59.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 045672 375 IVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP---DAVTWRALLGAC 450 (643)
Q Consensus 375 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~ 450 (643)
+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 334444455555555555555555542 1223445556666666666666666666555 2223 356677777777
Q ss_pred HHc-CCHHHHHHHHHHHHhcCCCCc
Q 045672 451 KVH-RNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 451 ~~~-g~~~~a~~~~~~~~~~~p~~~ 474 (643)
... |++++|++.++++++..|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 777 888888888888887777653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.2e-05 Score=68.74 Aligned_cols=64 Identities=11% Similarity=0.021 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 440 AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 440 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3567788888999999999999999999999999999999999999999999999999988764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.98 E-value=5e-05 Score=65.71 Aligned_cols=61 Identities=15% Similarity=0.104 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDP------QDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
.+..+...+...|++++|...++++++..+ ....++..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455556667777777777777777765421 1234677888888888899888888887654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0001 Score=61.25 Aligned_cols=99 Identities=14% Similarity=0.070 Sum_probs=59.0
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 045672 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGR---EHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD----AVTWRALLGACK 451 (643)
Q Consensus 380 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~ 451 (643)
..+...|++++|...|+.+.+.. +.+. ..+..+...|.+.|++++|.+.+++. ...|+ ...+..+..++.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34445555566655555555421 1112 34555556666666666666666554 11222 345666667777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 045672 452 VHRNTDLAICAAKKILNLDPQDPGTYILL 480 (643)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 480 (643)
..|++++|...++++++..|+++......
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 88888888888888888888776544433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=1.7e-05 Score=72.18 Aligned_cols=141 Identities=8% Similarity=-0.009 Sum_probs=87.9
Q ss_pred cCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CCh----------------hhHHHHH
Q 045672 285 GLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDV----------------ISWSTMI 344 (643)
Q Consensus 285 ~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~----------------~~~~~li 344 (643)
..|.++.+.+.+..... .......+..+...|.+.|++++|...|++... .+. ..|..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 34444544444443333 222344556677778888888888888887632 122 5677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 045672 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424 (643)
Q Consensus 345 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 424 (643)
.+|.+.|++++|+..+++..... +.+...+..+..++...|++++|...|+...+. .+.+...+..+..++...++.
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHH
Confidence 78888888888888888877642 334566777777778888888888888877663 223455666666666666665
Q ss_pred HHHH
Q 045672 425 QEAV 428 (643)
Q Consensus 425 ~~A~ 428 (643)
+++.
T Consensus 173 ~~~~ 176 (198)
T 2fbn_A 173 RKKD 176 (198)
T ss_dssp HC--
T ss_pred HHHH
Confidence 5554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00021 Score=73.58 Aligned_cols=192 Identities=11% Similarity=-0.002 Sum_probs=108.9
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCC-----Cc---------------chHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCC
Q 045672 214 IDIYAKLGELRNAECVFNEMPTR-----DL---------------VVWNSIIGGFAQNSDVDEALNLYKRMKRAG-FAAD 272 (643)
Q Consensus 214 i~~y~~~g~~~~A~~~f~~~~~~-----~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 272 (643)
...+.+.|++++|.+.|.++.+. +. .++..+...|...|++++|.+++.++...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34556677777777777665321 10 125566667777777777777766654421 0111
Q ss_pred HHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--------C-ChhhHHHH
Q 045672 273 QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--------K-DVISWSTM 343 (643)
Q Consensus 273 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--------~-~~~~~~~l 343 (643)
..+.. .+.+.+...+...|+.+.|..++..... . -..++..+
T Consensus 91 ~~~~~-----------------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 141 (434)
T 4b4t_Q 91 SKTVK-----------------------------VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL 141 (434)
T ss_dssp HHHHH-----------------------------HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred hHHHH-----------------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 11110 1112233333345555555555554411 1 12356667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--C--CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-C--CCC--hHHHHH
Q 045672 344 ISGLAQNGYSQEALKLFESMKVS--R--IKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYG-I--DPG--REHYSC 413 (643)
Q Consensus 344 i~~~~~~g~~~~A~~l~~~m~~~--g--~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~--~p~--~~~~~~ 413 (643)
...|...|++++|+.++++.... + -+|. ..++..++..|...|++++|..+++....... + +|. ...+..
T Consensus 142 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 221 (434)
T 4b4t_Q 142 ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLM 221 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence 77778888888888887776432 1 1222 34666777788888888888888877654211 1 111 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 045672 414 MIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m 434 (643)
+...+...|++++|...|.+.
T Consensus 222 ~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 222 SGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 677777888888887766544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00017 Score=60.06 Aligned_cols=104 Identities=10% Similarity=-0.020 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHH
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG-REHYSCMI 415 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 415 (643)
..+..+...+.+.|++++|++.|++.++. .|+ ...|..+..+|.+.|++++|++.++...+. .|+ ...+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~- 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI- 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH-
Confidence 34556666666666666666666666653 333 455555666666666666666666655441 111 0001000
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
..+|..+..++...|++++|+..+++.++..|
T Consensus 83 ------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 83 ------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp ------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 12344455566677777777777777777666
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00014 Score=75.55 Aligned_cols=124 Identities=10% Similarity=-0.019 Sum_probs=91.5
Q ss_pred HhccCCHHHHHHHHHHhHHhcC--CCC----ChHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYG--IDP----GREHYSCMIDLLGRAGKLQEAVKLIHEM---------PYEPDAV-TWRA 445 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ 445 (643)
+...|++++|..++++..+... +.| ...+++.|..+|...|++++|..++++. +..|++. +++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466777777777766654211 112 2346778888888888888888877665 2345543 6888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh-----cCCCCcch---HHHHHHHHHccCChhHHHHHHHHHHhCCC
Q 045672 446 LLGACKVHRNTDLAICAAKKILN-----LDPQDPGT---YILLSNIYANSQKWDEVAEVRKTMRARGI 505 (643)
Q Consensus 446 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 505 (643)
|...|...|++++|+.+++++++ ++|++|.+ ...|..++...|++++|..++.+++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999999999999999886 46776654 45778888899999999999999987543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=7.7e-05 Score=61.52 Aligned_cols=94 Identities=14% Similarity=0.070 Sum_probs=53.7
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 045672 378 VLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRN 455 (643)
Q Consensus 378 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 455 (643)
+...+.+.|++++|...|+...+. -+.+...+..+..++.+.|++++|+..+++. ...| +...|..+...+...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334455556666666666665552 1224555556666666666666666666555 2233 44566666667777777
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 045672 456 TDLAICAAKKILNLDPQD 473 (643)
Q Consensus 456 ~~~a~~~~~~~~~~~p~~ 473 (643)
+++|+..++++++.+|++
T Consensus 101 ~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 777777777777777754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.85 E-value=8.9e-05 Score=74.64 Aligned_cols=137 Identities=12% Similarity=0.039 Sum_probs=102.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHH
Q 045672 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMI 415 (643)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 415 (643)
...|..+...+.+.|++++|++.|++.++. .|+.. .....+ ...+ ..| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~~---~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGAK---LQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHGG---GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHHH---HHHHHHHHHHHHH
Confidence 345777788888888888888888887652 11100 000111 1111 112 356788888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHH
Q 045672 416 DLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493 (643)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 493 (643)
.+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887 4555 5668888889999999999999999999999999999999999999988888777
Q ss_pred HH
Q 045672 494 AE 495 (643)
Q Consensus 494 ~~ 495 (643)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.85 E-value=4.1e-05 Score=65.55 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM--------PYEPDAV-TW----RALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 476 (643)
.|..+..++.+.|++++|+..+++. ++.|+.. .| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555556666666666666555544 3377654 78 888899999999999999999999999988755
Q ss_pred HH
Q 045672 477 YI 478 (643)
Q Consensus 477 ~~ 478 (643)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=8.9e-05 Score=64.06 Aligned_cols=131 Identities=13% Similarity=0.005 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHH
Q 045672 340 WSTMISGLAQNGYSQEALKLFESMKVSRI-KPN----YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG----REH 410 (643)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 410 (643)
+..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++...+...-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444444455555555555544432110 011 123444445555555555555555554432111111 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEM-------PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLD 470 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 470 (643)
+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...+++++++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 555566666666666666666544 1111 12345566677788888888888888877653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.4e-05 Score=75.96 Aligned_cols=147 Identities=14% Similarity=-0.009 Sum_probs=79.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
...|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 345677777788888888999888887763 455432 22333444433222 1 136777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HccCChhHH
Q 045672 417 LLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY-ANSQKWDEV 493 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 493 (643)
+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999998888876 3334 5678888888899999999999999999999998888888888774 455677788
Q ss_pred HHHHHHHHhC
Q 045672 494 AEVRKTMRAR 503 (643)
Q Consensus 494 ~~~~~~m~~~ 503 (643)
..+++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888877654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.79 E-value=7.7e-05 Score=65.15 Aligned_cols=128 Identities=15% Similarity=-0.004 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
...|......+.+.|++++|+..|++.+.. +............. ...+ .+.+...|..+..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~------------~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~nla~ 71 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR------------LDTLILREKPGEPE--WVEL-----DRKNIPLYANMSQ 71 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHTSCTTSHH--HHHH-----HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------HHHhcccCCCCHHH--HHHH-----HHHHHHHHHHHHH
Confidence 345666667777777777777777776542 00000000000000 0000 0123456778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-chHHHHHHH
Q 045672 417 LLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP-GTYILLSNI 483 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 483 (643)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++ .....+..+
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 888999999999888776 3334 566888888999999999999999999999999887 444444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.77 E-value=2.9e-05 Score=63.63 Aligned_cols=92 Identities=11% Similarity=-0.000 Sum_probs=59.6
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 045672 385 AGFVEDGWNHFKSMKKFYG--IDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAI 460 (643)
Q Consensus 385 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 460 (643)
.|++++|+..|++..+. + -+.+...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666666541 1 1223455666777777777777777777766 2233 4556777777788888888888
Q ss_pred HHHHHHHhcCCCCcchH
Q 045672 461 CAAKKILNLDPQDPGTY 477 (643)
Q Consensus 461 ~~~~~~~~~~p~~~~~~ 477 (643)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888888888776543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0015 Score=69.58 Aligned_cols=171 Identities=10% Similarity=0.025 Sum_probs=133.2
Q ss_pred cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 045672 319 CGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNGY----------SQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385 (643)
Q Consensus 319 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 385 (643)
...-++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+.. +-+..+|..-...+.+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3345677888887743 345577776666666666 899999999998753 23467777777778888
Q ss_pred C--CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-------
Q 045672 386 G--FVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAG-KLQEAVKLIHEM-PYEP-DAVTWRALLGACKVH------- 453 (643)
Q Consensus 386 g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~------- 453 (643)
| +++++.+.++++.+. -+-+...|+.-.-.+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 8 679999999999884 3446777777777788888 899999999888 4444 677888877776553
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhH
Q 045672 454 -------RNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492 (643)
Q Consensus 454 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 492 (643)
+.++++++.+.+++..+|++..+|..+..++.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999988655
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00012 Score=58.03 Aligned_cols=65 Identities=23% Similarity=0.293 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 439 DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 439 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+...|..+...+...|++++|+..++++++.+|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788889999999999999999999999999999999999999999999999999999988753
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.75 E-value=6.4e-05 Score=60.52 Aligned_cols=92 Identities=14% Similarity=-0.012 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 045672 407 GREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQD------PGTYI 478 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 478 (643)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456777788888888888888888776 2333 56788888888999999999999999999999988 67788
Q ss_pred HHHHHHHccCChhHHHHHHH
Q 045672 479 LLSNIYANSQKWDEVAEVRK 498 (643)
Q Consensus 479 ~l~~~~~~~g~~~~a~~~~~ 498 (643)
.++.++...|+.++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887777665443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.75 E-value=6.9e-05 Score=74.53 Aligned_cols=152 Identities=12% Similarity=-0.014 Sum_probs=82.5
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 385 (643)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...+..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44567788889999999999999998743221111 1223344444443321 13677788888999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHH-HHHcCCHHHHHHH
Q 045672 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAV-TWRALLGA-CKVHRNTDLAICA 462 (643)
Q Consensus 386 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~-~~~~g~~~~a~~~ 462 (643)
|++++|+..++...+. .+.+...|..+..+|...|++++|.+.|++. ...|+.. .+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998873 2346778889999999999999999999987 4556443 44444444 3455678888999
Q ss_pred HHHHHhcCCCCc
Q 045672 463 AKKILNLDPQDP 474 (643)
Q Consensus 463 ~~~~~~~~p~~~ 474 (643)
++++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999888764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00018 Score=55.36 Aligned_cols=81 Identities=23% Similarity=0.292 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666777778888888888887766 2223 56677788888889999999999999999999998888888888876
Q ss_pred ccC
Q 045672 486 NSQ 488 (643)
Q Consensus 486 ~~g 488 (643)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00016 Score=75.24 Aligned_cols=115 Identities=11% Similarity=-0.014 Sum_probs=88.4
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc---chHH
Q 045672 417 LLGRAGKLQEAVKLIHEM---------PYEPDA-VTWRALLGACKVHRNTDLAICAAKKILN-----LDPQDP---GTYI 478 (643)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~ 478 (643)
.+..+|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ ++|++| .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 223443 3788999999999999999999999986 356654 4678
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 045672 479 LLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLVG 549 (643)
Q Consensus 479 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~ 549 (643)
.|+.+|..+|++++|..++++..+.-.. .-+..||...++...+.+...+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988753111 1234699999888777766655543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00024 Score=57.68 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=63.4
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 427 AVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 427 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
|.+.|++. ...| +...|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44445444 3334 56678888888999999999999999999999999999999999999999999999999988753
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00044 Score=71.86 Aligned_cols=95 Identities=12% Similarity=0.015 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD----------------AVTWRALLGACKVHRNTDLAICAAKKILNLDPQ 472 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 472 (643)
.+..+...|.+.|++++|...|++. ...|+ ...|..+..++.+.|++++|+..++++++++|+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 3444455555555555555555544 11111 467888889999999999999999999999999
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 473 DPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 473 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
++.+|..++.+|...|++++|...+++..+..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998743
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00026 Score=72.48 Aligned_cols=116 Identities=9% Similarity=0.066 Sum_probs=86.2
Q ss_pred HHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc---ch
Q 045672 415 IDLLGRAGKLQEAVKLIHEM---------PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILN-----LDPQDP---GT 476 (643)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 476 (643)
+..+.+.|++++|++++++. +..|+ ..+++.+..+|...|++++|+.+++++++ ++|++| .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677888888877655 11222 23678888889999999999999998886 345554 46
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 045672 477 YILLSNIYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHLKHLIQKLV 548 (643)
Q Consensus 477 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~ 548 (643)
+..|+.+|...|++++|..++++..+.-.. .-+..||...+++..|.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999988752110 223469999999888888877765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00067 Score=52.58 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 045672 438 PDAVTWRALLGACKVHRN---TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 506 (643)
+|...+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|...|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466778888887655544 799999999999999999999999999999999999999999999986543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0001 Score=62.97 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=62.1
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHcc
Q 045672 420 RAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRN----------TDLAICAAKKILNLDPQDPGTYILLSNIYANS 487 (643)
Q Consensus 420 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 487 (643)
|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344555555555544 2223 44455555555544443 57999999999999999999999999999987
Q ss_pred C-----------ChhHHHHHHHHHHhCC
Q 045672 488 Q-----------KWDEVAEVRKTMRARG 504 (643)
Q Consensus 488 g-----------~~~~a~~~~~~m~~~g 504 (643)
| ++++|.+.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998743
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.001 Score=66.80 Aligned_cols=117 Identities=8% Similarity=0.029 Sum_probs=73.6
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCC-------------------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045672 309 NNALLDMYCKCGSLEDAMSVFSRMIQ-------------------KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIK 369 (643)
Q Consensus 309 ~~~Li~~y~~~g~~~~A~~~~~~m~~-------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 369 (643)
+..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.+++.++. .
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--D 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--C
Confidence 34455566666666666666655432 13456677777777777777777777777763 3
Q ss_pred C-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 045672 370 P-NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVK 429 (643)
Q Consensus 370 p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 429 (643)
| +...+..+..++...|++++|...|+++.+. .+.+...+..+..++.+.++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3556666777777777777777777777653 12245555566666666666655543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00025 Score=72.44 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=73.7
Q ss_pred cCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc---chHHHHHH
Q 045672 421 AGKLQEAVKLIHEM---------PYEPDA-VTWRALLGACKVHRNTDLAICAAKKILN-----LDPQDP---GTYILLSN 482 (643)
Q Consensus 421 ~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~ 482 (643)
.|++++|..++++. +..|+. .+++.|..+|...|++++|+.+++++++ ++|++| .+|..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777766554 223443 3688888889999999999999999886 355554 46889999
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCcCCceeEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 045672 483 IYANSQKWDEVAEVRKTMRARGITKEPGCSWIEVNKQIHAFNVADSSHPQIDKINKHL 540 (643)
Q Consensus 483 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l 540 (643)
+|..+|++++|..++++..+.-.. .-+..||...++...|
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHH
Confidence 999999999999999988753211 1234688887776544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00051 Score=55.02 Aligned_cols=66 Identities=8% Similarity=0.001 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 439 DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 439 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+...|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788888899999999999999999999999999999999999999999999999999998643
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0034 Score=52.85 Aligned_cols=50 Identities=12% Similarity=0.053 Sum_probs=30.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHc----cCChhHHHHHHHHHHhCC
Q 045672 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN----SQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 504 (643)
.+++++|...++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|
T Consensus 74 ~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 45566666666665554 344566666666666 666666766666666655
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0012 Score=50.53 Aligned_cols=64 Identities=28% Similarity=0.333 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 440 AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 440 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
...|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4567778888999999999999999999999999999999999999999999999999998864
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0081 Score=63.91 Aligned_cols=150 Identities=9% Similarity=0.016 Sum_probs=119.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC----------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 045672 350 NGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGF----------VEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418 (643)
Q Consensus 350 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 418 (643)
....++|++.++++... .|+ ...|+.--.++.+.|+ ++++.+.++.+.+. .+-+...|..-.-++
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34557889999999884 566 4455555555555566 89999999999884 344667777777788
Q ss_pred HhcC--CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHcc------
Q 045672 419 GRAG--KLQEAVKLIHEM-PYE-PDAVTWRALLGACKVHR-NTDLAICAAKKILNLDPQDPGTYILLSNIYANS------ 487 (643)
Q Consensus 419 ~~~g--~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 487 (643)
.+.| +++++++.++++ ... .+...|+--.......| .++++++.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8889 779999999998 333 47788998888888888 899999999999999999999999999988774
Q ss_pred --------CChhHHHHHHHHHHhC
Q 045672 488 --------QKWDEVAEVRKTMRAR 503 (643)
Q Consensus 488 --------g~~~~a~~~~~~m~~~ 503 (643)
++++++.+.+++....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 5678888888777653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0089 Score=50.21 Aligned_cols=112 Identities=9% Similarity=-0.048 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHH
Q 045672 351 GYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR----AGKLQE 426 (643)
Q Consensus 351 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 426 (643)
+++++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999998887 44444 666677778888999999998873 466778888888888 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 045672 427 AVKLIHEMPYEPDAVTWRALLGACKV----HRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 427 A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 471 (643)
|.+.|++.-...+...+..|...|.. .++.++|...++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999888434577788888888887 8899999999999988754
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0024 Score=51.63 Aligned_cols=80 Identities=11% Similarity=0.025 Sum_probs=49.7
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 391 GWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 391 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
+...|+...+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555441 2234556666666666777777777666655 2223 455666777777777777777777777777
Q ss_pred cCCC
Q 045672 469 LDPQ 472 (643)
Q Consensus 469 ~~p~ 472 (643)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00041 Score=59.22 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=32.5
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCc
Q 045672 425 QEAVKLIHEM-PYEP-DAVTWRALLGACKVH-----------RNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 425 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 474 (643)
++|+..|++. .+.| +...|..+..+|... |++++|+..|+++++++|++.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 3444444444 2333 233455555555444 589999999999999999875
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.015 Score=57.03 Aligned_cols=47 Identities=11% Similarity=0.044 Sum_probs=30.1
Q ss_pred CCChhhHHHHHHHHH--hcC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 045672 334 QKDVISWSTMISGLA--QNG---YSQEALKLFESMKVSRIKPN-YITIVGVLFAC 382 (643)
Q Consensus 334 ~~~~~~~~~li~~~~--~~g---~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 382 (643)
..+...|...+.+.. ..+ ...+|+.+|++.++. .|+ ...+..+..++
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 346778887776643 333 347899999999884 676 34555444444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0058 Score=62.36 Aligned_cols=94 Identities=12% Similarity=0.005 Sum_probs=64.6
Q ss_pred ccCCHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHH
Q 045672 384 HAGFVEDGWNHFKSMKKFY--GIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM---------PYEPDAV-TWRALL 447 (643)
Q Consensus 384 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll 447 (643)
+.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|++. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3466777777666654421 11222 346777778888888888888777665 2345544 688888
Q ss_pred HHHHHcCCHHHHHHHHHHHHh-----cCCCCcchH
Q 045672 448 GACKVHRNTDLAICAAKKILN-----LDPQDPGTY 477 (643)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 477 (643)
..|...|++++|+.+++++++ ++|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 889999999999999999876 468777543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.068 Score=43.23 Aligned_cols=141 Identities=10% Similarity=0.078 Sum_probs=100.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 045672 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 426 (643)
+.-.|..++..++..+...+ .+..-++.++.-....-+-+-..++++.+-+-+.+. .+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 34467777888888877653 345556666655555556666666666665533332 3555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 045672 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506 (643)
Q Consensus 427 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 506 (643)
...-+-.++ .+.......++.....|.-+.-.+++..++.-.|.++....-++++|.+.|+..+|.+++.+.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555553 244455666778888999999999999977777778899999999999999999999999999999975
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.011 Score=60.50 Aligned_cols=98 Identities=10% Similarity=-0.102 Sum_probs=60.8
Q ss_pred HhccCCHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFY--GIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM---------PYEPDAV-TWRA 445 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ 445 (643)
+...|++++|..++++..+.. -+.|+ ..+++.|...|...|++++|+.+++++ +..|+.. +++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 344556666666665554321 11121 335666666677777777776666554 2334443 6777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh-----cCCCCcchHHH
Q 045672 446 LLGACKVHRNTDLAICAAKKILN-----LDPQDPGTYIL 479 (643)
Q Consensus 446 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~ 479 (643)
|...|...|++++|+.+++++++ ++|++|.+-..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88888888888888888888875 47887755443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0034 Score=48.91 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=25.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcc-hHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 450 CKVHRNTDLAICAAKKILNLDPQDPG-TYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+...|++++|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444444445444444444444 444444444444555555444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0074 Score=47.30 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=34.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 045672 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 400 (643)
+...|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555555556666666666666555532 11234455555555566666666655555543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0084 Score=46.60 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=50.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 045672 414 MIDLLGRAGKLQEAVKLIHEM-PYEP-DAV-TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 477 (643)
....+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|+..++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 355677888888888888776 2334 456 778888888999999999999999999999887766
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.014 Score=49.18 Aligned_cols=65 Identities=6% Similarity=-0.018 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 438 PDAVTWRALLGACKVHR---NTDLAICAAKKILNLD-P-QDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
++..+.-.+..++.+.+ +.++|+.+++++++.+ | ++...+..|+-+|.+.|++++|+++++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56666666777777766 5668888888888877 6 3566788888888888888888888888876
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.12 Score=57.81 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=69.1
Q ss_pred HHcCCChhHHHH-HHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHH
Q 045672 119 HVKFSLLEEAQV-LFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCG 197 (643)
Q Consensus 119 ~~~~g~~~~A~~-~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~ 197 (643)
....+++++|.+ ++..++. ......++..+.+.|.+++|+++.+.-..
T Consensus 609 ~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~~----------------------------- 657 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQDQ----------------------------- 657 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHHH-----------------------------
T ss_pred HHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcch-----------------------------
Confidence 345677888877 6655441 11236667777777888777765532110
Q ss_pred HHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 045672 198 IIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKR 266 (643)
Q Consensus 198 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 266 (643)
-......+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++..
T Consensus 658 ---------------~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 658 ---------------KFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp ---------------HHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred ---------------heehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 1233466899999999987774 467899999999999999999999987743
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.11 Score=58.02 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=63.1
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 045672 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395 (643)
Q Consensus 316 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 395 (643)
...+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 456788888888876663 456788888888888888888888887653 233444444456666554444
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 045672 396 KSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM 434 (643)
Q Consensus 396 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (643)
+..... | .++.-..+|.+.|++++|.+++.++
T Consensus 731 ~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 433331 1 1333444566667777776666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.03 Score=52.56 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=67.2
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHcc-CChhH
Q 045672 424 LQEAVKLIHEM-PYEPD---AVTWRALLGACKV-----HRNTDLAICAAKKILNLDPQD-PGTYILLSNIYANS-QKWDE 492 (643)
Q Consensus 424 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 492 (643)
..+|..++++. .+.|+ -..|..|...|.. -|+.++|++.|++++++.|+. ..+++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34455555544 44565 4467777777777 499999999999999999974 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCCcCC
Q 045672 493 VAEVRKTMRARGITKEP 509 (643)
Q Consensus 493 a~~~~~~m~~~g~~~~~ 509 (643)
+.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999986655435
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.069 Score=42.00 Aligned_cols=73 Identities=16% Similarity=0.061 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHH
Q 045672 408 REHYSCMIDLLGRAGKLQEAVKLIHEM-----P----YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478 (643)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 478 (643)
..-+..|...+.+.|+++.|...|+.. + -.+....+..|..++.+.|+++.|...+++++++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334445666666666666666666554 0 1234567888889999999999999999999999999876644
Q ss_pred HH
Q 045672 479 LL 480 (643)
Q Consensus 479 ~l 480 (643)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 44
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.35 Score=47.36 Aligned_cols=71 Identities=10% Similarity=0.105 Sum_probs=42.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 045672 336 DVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHY 411 (643)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 411 (643)
+...|.++...+...|++++|+..++++...+ |+...|..+...+.-.|+.++|.+.|++..+ +.|...+|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChH
Confidence 45556655555555667777777776666643 5655555555566666677777666666654 24554443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=3.2 Score=44.08 Aligned_cols=246 Identities=8% Similarity=0.033 Sum_probs=119.3
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHh
Q 045672 212 ALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLEL 291 (643)
Q Consensus 212 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 291 (643)
.-+..+.+.+++......+.. +..+...--....+....|+..+|....+.+-..| ...+.....++..+...|.+..
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCH
Confidence 345556666777776665555 32233333345555666677666666555554443 2233344455555544333222
Q ss_pred HHHHHHHH---------------hh-cCCch-hHHhHHHHHHHhcCCHHHHHHHHhhcCCCChh---hHHHHHHHHHhcC
Q 045672 292 GTQVHVHV---------------LK-YDHDL-ILNNALLDMYCKCGSLEDAMSVFSRMIQKDVI---SWSTMISGLAQNG 351 (643)
Q Consensus 292 a~~i~~~~---------------~~-~~~~~-~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g 351 (643)
.. ++.++ .+ ++++. .....++..+.+-..+ ....... .++.. .+...+.-+++ .
T Consensus 155 ~~-~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 155 LA-YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HH-HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH-H
T ss_pred HH-HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh-c
Confidence 11 11111 11 11111 1122223222222222 1111111 11111 11112233333 3
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 045672 352 YSQEALKLFESMKVSR-IKPNYI--TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAV 428 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 428 (643)
+.+.|..+|....... +.+... ....+.......+...++...+...... .++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 7889999998886543 322222 1222333334445345555666654432 233333444444555789999999
Q ss_pred HHHHhCCCCC-CHHHHH-HHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 429 KLIHEMPYEP-DAVTWR-ALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 429 ~~~~~m~~~p-~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
..|+.|+..+ +..-|. =+..+....|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999996432 222221 123456778999999999999875
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.38 Score=41.49 Aligned_cols=128 Identities=15% Similarity=0.153 Sum_probs=86.9
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 045672 315 MYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394 (643)
Q Consensus 315 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 394 (643)
....+|+++.|.++-+.+ .+...|..+......+|+++-|.+.|.+... |..+.--|.-.|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345789999999887776 4567899999999999999999999988653 33444455667777665554
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045672 395 FKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKI 466 (643)
Q Consensus 395 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 466 (643)
-+....+ | -++.-...+.-.|+++++.+++.+.+.-|... -....+|..+.|.++.+++
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 4443332 1 24444555667899999999988876433221 1134477777777776655
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.16 Score=38.97 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=51.2
Q ss_pred CCChHHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 405 DPGREHYSCMIDLLGRAGK---LQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 405 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
+++...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..++++++.+|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3466677777777765544 67888888776 3445 455666667778889999999999999999888743
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.094 Score=44.10 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 476 (643)
.+-.|.-++.+.|++++|.+.++.+++.+|++..+
T Consensus 73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 73 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34445566789999999999999999999988644
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.17 Score=50.96 Aligned_cols=211 Identities=9% Similarity=0.073 Sum_probs=110.8
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHhhCCC----C-------CcchHHHHHHHHHhCCChhHHHHHH------------
Q 045672 205 SDVFVRSALIDIYAKLGELRNAECVFNEMPT----R-------DLVVWNSIIGGFAQNSDVDEALNLY------------ 261 (643)
Q Consensus 205 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~~~------------ 261 (643)
....+++-|.-.|+|- +.++-.+.++..-. | ....|.-++-.|.+..+++.|....
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~ 339 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 339 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGG
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHH
Confidence 3456677777777664 23333333322211 1 3456777777777777777664321
Q ss_pred -HHHHHcCCCCCHHH---------------HHHHHHHHhcCChhHhHHHHHHHHhh------------cCCchhHHhHHH
Q 045672 262 -KRMKRAGFAADQST---------------LTSVLRACTGLALLELGTQVHVHVLK------------YDHDLILNNALL 313 (643)
Q Consensus 262 -~~m~~~g~~p~~~t---------------~~~ll~a~~~~~~~~~a~~i~~~~~~------------~~~~~~~~~~Li 313 (643)
.+.... ..|... .+-++.++...=+...+.+++...-. ...+..+-.++-
T Consensus 340 Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln 417 (624)
T 3lvg_A 340 FKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLN 417 (624)
T ss_dssp GTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHH
T ss_pred HHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHH
Confidence 000000 111112 23344444444444444455444322 122334556777
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC------------ChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045672 314 DMYCKCGSLEDAMSVFSRMIQK------------DVISWSTM-ISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLF 380 (643)
Q Consensus 314 ~~y~~~g~~~~A~~~~~~m~~~------------~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 380 (643)
+.|....+++.-+.-.+.-..- +..-+..+ ...|.+++++++++++.++ .++ |.-.+.
T Consensus 418 ~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dkl------ykDAie 488 (624)
T 3lvg_A 418 NLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DSL------YKDAMQ 488 (624)
T ss_dssp HHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TCC------TTGGGT
T ss_pred HHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---ccc------HHHHHH
Confidence 8888888877665544433222 22223222 3346677778777765432 112 223345
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 045672 381 ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI 431 (643)
Q Consensus 381 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 431 (643)
....+|+.+-+.++++-..+. -+.+.|.+.+-.+...=++|-++++-
T Consensus 489 tAa~S~~~elaeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 489 YASESKDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp TTTTCCCTTHHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHHH
Confidence 566788888888888887763 34456666655555666677777763
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.36 E-value=0.0036 Score=62.58 Aligned_cols=236 Identities=11% Similarity=0.078 Sum_probs=147.2
Q ss_pred chhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 045672 108 ETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDS 187 (643)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 187 (643)
.+.+|+.|..++.+.|.+.+|.+-| ++..|+..|..+|.+..+.|.+++-+..+...++.. -++..=+.++-++++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHh
Confidence 3456777777777777777776655 333566667777777777777777777666555442 233334456666666
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC------------------------CCcchHHH
Q 045672 188 LIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT------------------------RDLVVWNS 243 (643)
Q Consensus 188 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------------------~~~~~~~~ 243 (643)
.+++..+-+ .=-.|+..-...+.+-+...|.++.|.-+|..+.. .++.+|-.
T Consensus 129 ~~rL~elEe----fl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 129 TNRLAELEE----FINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp SCSSSTTTS----TTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred hCcHHHHHH----HHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 555432111 11134444455566777778888888877776642 36778999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCH
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSL 322 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~ 322 (643)
+-.+|...+++.-|.-.--.+.- .|| -...++.-|...|.+++-..+++.... -.....+++-|.-.|+|- ++
T Consensus 205 V~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CH
Confidence 99999988888777554433332 222 122344556777777777777777776 455667778888888775 33
Q ss_pred HHHHHHHh----hcCCC-------ChhhHHHHHHHHHhcCCHHHHH
Q 045672 323 EDAMSVFS----RMIQK-------DVISWSTMISGLAQNGYSQEAL 357 (643)
Q Consensus 323 ~~A~~~~~----~m~~~-------~~~~~~~li~~~~~~g~~~~A~ 357 (643)
++-.+-++ ++.-| ....|.-++-.|.+..+++.|.
T Consensus 279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 33333332 22212 3456888888888888888665
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.24 Score=39.96 Aligned_cols=44 Identities=7% Similarity=0.080 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcC-C-CCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 459 AICAAKKILNLD-P-QDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 459 a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
++.+++.++..+ | ..-.....|+-+|.+.|++++|++.++.+.+
T Consensus 57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444433 2 1223444444455555555555555554443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.27 Score=53.21 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=50.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHH
Q 045672 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMR 501 (643)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 501 (643)
.-|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 347788999999999999999999999999999999999999999999998873
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.30 E-value=2.8 Score=34.07 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=86.3
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHH
Q 045672 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMS 327 (643)
Q Consensus 249 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~ 327 (643)
.-.|..++..++..+..... +..-++-++.-....-+-+-..+.++.+-+ ++. ..||++.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi------------s~C~NlKrVi~ 82 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL------------DKCQNLKSVVE 82 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG------------GGCSCTHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc------------HhhhcHHHHHH
Confidence 34566677777776665532 233333333333333333333333333333 221 25666666666
Q ss_pred HHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 045672 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405 (643)
Q Consensus 328 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 405 (643)
.+-.+.. +....+..++.+...|+-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.++.++ |++
T Consensus 83 C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 83 CGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 6655433 334456667788889999988888888654 34788888889999999999999999999888874 653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.17 E-value=3 Score=34.31 Aligned_cols=65 Identities=6% Similarity=-0.079 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 438 PDAVTWRALLGACKVHR---NTDLAICAAKKILNLDPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 438 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
|+..+--.+..++.+.. +..+++.+++.+....|. .-.....|+-+|.+.|++++|+++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555444555555544 345677777777776664 334666777778888888888888877776
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.82 E-value=0.39 Score=37.49 Aligned_cols=65 Identities=11% Similarity=-0.096 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 439 DAVTWRALLGACKVHRNTDLAICAAKKILNLD-------PQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 439 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+..-+-.+...+...|+++.|..-++++++.. +..+.++..|+.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455677788999999999999999998742 334568999999999999999999999998763
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.84 E-value=1.4 Score=35.56 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 045672 406 PGREHYSCMIDLLGRAGKLQE---AVKLIHEM-PYE-P-DA-VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTY 477 (643)
Q Consensus 406 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 477 (643)
|+..+--.+.-++.+.....+ ++.++++. ... | +. ...-.|.-++.+.|+++.|.+.++.+++.+|+|..+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 444444444444555444433 44444443 111 2 11 1233345568899999999999999999999886443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=91.34 E-value=1 Score=42.22 Aligned_cols=80 Identities=13% Similarity=0.055 Sum_probs=46.1
Q ss_pred HhHHHHHHHHhhcCCc---hhHHhHHHHHHHh-----cCCHHHHHHHHhhcC--CC--ChhhHHHHHHHHHhc-CCHHHH
Q 045672 290 ELGTQVHVHVLKYDHD---LILNNALLDMYCK-----CGSLEDAMSVFSRMI--QK--DVISWSTMISGLAQN-GYSQEA 356 (643)
Q Consensus 290 ~~a~~i~~~~~~~~~~---~~~~~~Li~~y~~-----~g~~~~A~~~~~~m~--~~--~~~~~~~li~~~~~~-g~~~~A 356 (643)
..++...++++++.|+ ...+..|...|.+ -|+.++|++.|++.. .| +..++......++.. |+.++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3344444444443443 3456666666666 367777777776652 23 355555666666663 667777
Q ss_pred HHHHHHHHHCCCC
Q 045672 357 LKLFESMKVSRIK 369 (643)
Q Consensus 357 ~~l~~~m~~~g~~ 369 (643)
.+.+++.+.....
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 7777777665444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.67 E-value=0.52 Score=39.10 Aligned_cols=52 Identities=10% Similarity=-0.086 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 453 HRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
.+|.++|..+|+.++.....-+..+...+..-.++|+...|++++.+....+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 3677777777777766533334455556666677777777777777777654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.48 E-value=2 Score=35.63 Aligned_cols=54 Identities=7% Similarity=-0.085 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 045672 422 GKLQEAVKLIHEM-P-YEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG 475 (643)
Q Consensus 422 g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 475 (643)
++.++|.++|+.+ . .+.=...|-....--.++|+.+.|.+++.+++.+.|....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 5555555555554 0 0111556766666677899999999999999998886543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.71 E-value=9.1 Score=32.89 Aligned_cols=109 Identities=10% Similarity=0.011 Sum_probs=60.3
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHA 385 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 385 (643)
...|..|.+...+.|+++-|++.|....+ +..+.-.|.-.|+.++-..+-+.....|- ++.....+...
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~iA~~~g~------~n~af~~~l~l 102 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNIAQTRED------FGSMLLNTFYN 102 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHHHHTTC------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHHHHHCcc------HHHHHHHHHHc
Confidence 44566677777777777777777776654 33334445556666665555544444431 33333445566
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 045672 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435 (643)
Q Consensus 386 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (643)
|+++++.++|.+..+ -|... -.....|..+.|.++.++++
T Consensus 103 Gdv~~~i~lL~~~~r----~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 103 NSTKERSSIFAEGGS----LPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp TCHHHHHHHHHHTTC----HHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCC----hHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 888888777755432 12111 11112455666777776664
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.26 E-value=20 Score=36.25 Aligned_cols=254 Identities=7% Similarity=0.052 Sum_probs=145.0
Q ss_pred CCcchHHHHHHHHHh-----CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH----HHHcCC
Q 045672 53 RDLPRAMKAMHAMQC-----HGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN----MHVKFS 123 (643)
Q Consensus 53 g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~----~~~~~g 123 (643)
|++.+|++.+..+.+ .+..........++..|...++++...+.+..+.+..-.. ......+++ ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 678888887766543 2234456678889999999999998877776665532222 122233333 222222
Q ss_pred --ChhHHHHHHccCCC---C-------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhH
Q 045672 124 --LLEEAQVLFDQMPE---R-------NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191 (643)
Q Consensus 124 --~~~~A~~~f~~m~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 191 (643)
+.+.-..+.+.... . .......|...|-..|++.+|.+++.++...-...+....
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~------------- 175 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE------------- 175 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH-------------
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH-------------
Confidence 22233344443332 1 1123456788889999999999999998743211111111
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC------CC----cchHHHHHHHHHhCCChhHHHHHH
Q 045672 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT------RD----LVVWNSIIGGFAQNSDVDEALNLY 261 (643)
Q Consensus 192 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------~~----~~~~~~li~~~~~~g~~~~A~~~~ 261 (643)
-+..+...+..|...+++..|..++.++.. ++ ...+..++..+...+++.+|...|
T Consensus 176 --------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 176 --------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp --------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 022334467788888999888887776531 11 134566777788889999998888
Q ss_pred HHHHHc-CCCCCHHHHHHH-----HHHHhcCChhHhHHHHHHHHhh--cCCchhHHhHHHHHHHhc--CCHHHHHHHHhh
Q 045672 262 KRMKRA-GFAADQSTLTSV-----LRACTGLALLELGTQVHVHVLK--YDHDLILNNALLDMYCKC--GSLEDAMSVFSR 331 (643)
Q Consensus 262 ~~m~~~-g~~p~~~t~~~l-----l~a~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~Li~~y~~~--g~~~~A~~~~~~ 331 (643)
.+.... ...-|...+..+ +.........+... +.....+ ..++...+..|+.+|... .+++.+.+.|..
T Consensus 242 ~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~-ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 242 QEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQND-LIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHH-HHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHH-HHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 777542 112233222221 11111111222222 2222222 335667788888888764 467778788876
Q ss_pred cCCC
Q 045672 332 MIQK 335 (643)
Q Consensus 332 m~~~ 335 (643)
...+
T Consensus 321 ~L~~ 324 (445)
T 4b4t_P 321 VLNE 324 (445)
T ss_dssp STTT
T ss_pred Hhcc
Confidence 6444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.57 E-value=1 Score=45.06 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh-----CCCCcCC
Q 045672 444 RALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA-----RGITKEP 509 (643)
Q Consensus 444 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~ 509 (643)
..++.++...|+++++...++.++..+|-+...|..++.+|.+.|+..+|.+.|+...+ -|+.|.|
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34556677888888888888888888888888889999999999999999888877653 3777655
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.03 E-value=2.4 Score=34.39 Aligned_cols=46 Identities=9% Similarity=-0.013 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCC-CcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 457 DLAICAAKKILNLDPQ-DPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 457 ~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
.+|+.+++.+...+|. .-..+..|+-++.+.|++++|+++.+.+.+
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4566666666655553 234555666666666666666666666654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.75 E-value=19 Score=34.20 Aligned_cols=168 Identities=10% Similarity=0.014 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHH
Q 045672 208 FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNL----YKRMKRAGFAADQSTLTSVLRAC 283 (643)
Q Consensus 208 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~ 283 (643)
..+.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+++++..+...++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455677888889999999887533 33445667777666654 44455568888888888888777
Q ss_pred hcCChhH-hHHHHHHHHhh----c----CCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhc---C
Q 045672 284 TGLALLE-LGTQVHVHVLK----Y----DHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQN---G 351 (643)
Q Consensus 284 ~~~~~~~-~a~~i~~~~~~----~----~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~---g 351 (643)
.....-+ .-..+...+++ . ..+......+...|.+.|++.+|+..|-.-...|...+..|+--+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 6543222 22344444544 2 236678889999999999999999987633323455555554444433 4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 045672 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKF 401 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 401 (643)
...++-- ..-..++ -|.-.|++..|..+|+...+.
T Consensus 183 ~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 4433221 1112233 234568888888888877653
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.30 E-value=40 Score=37.40 Aligned_cols=246 Identities=11% Similarity=-0.042 Sum_probs=125.5
Q ss_pred HHHcCCHHHHHHHHhhCCCC----Cc--chHHHHHHHHHhCCChhHHHHHHHHHHHcCC--CC---CHHH----HHHHHH
Q 045672 217 YAKLGELRNAECVFNEMPTR----DL--VVWNSIIGGFAQNSDVDEALNLYKRMKRAGF--AA---DQST----LTSVLR 281 (643)
Q Consensus 217 y~~~g~~~~A~~~f~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~t----~~~ll~ 281 (643)
....|+.+++..+++..... +. ..-..+.-+.+..|..+++++++.......- .- +... ...+.-
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44567777888888776541 21 2223344556667776778887777655321 00 0111 111222
Q ss_pred HHhcCChhHhHHHHHHHHhh-cCCch--hHHhHHHHHHHhcCCHHHHHHHHhhcCC--CC-hhhHHHHHHHHHhcCCHHH
Q 045672 282 ACTGLALLELGTQVHVHVLK-YDHDL--ILNNALLDMYCKCGSLEDAMSVFSRMIQ--KD-VISWSTMISGLAQNGYSQE 355 (643)
Q Consensus 282 a~~~~~~~~~a~~i~~~~~~-~~~~~--~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~ 355 (643)
++...++-+ +...+..+.. -.... ...-+|...|.-.|+-+....++..+.+ .+ +.-.-++.-|+...|+.+.
T Consensus 464 a~~GS~~ee-v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIE-VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHH-HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHH-HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 223333332 2233333322 11111 2223445556677888777777766532 22 2223333445557888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 045672 356 ALKLFESMKVSRIKPNYITIV---GVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432 (643)
Q Consensus 356 A~~l~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 432 (643)
+..+.+.+.... .|. .-|. .+..+|+..|+.....+++..+..+ ...++.-...+.-++.-.|..+.+.++++
T Consensus 543 ~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 543 ADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 888888887631 222 2222 3445778889988888888888763 22233322233333334566555666665
Q ss_pred hCCCCCCHHHHH--HHHHHHHHcCCH-HHHHHHHHHHH
Q 045672 433 EMPYEPDAVTWR--ALLGACKVHRNT-DLAICAAKKIL 467 (643)
Q Consensus 433 ~m~~~p~~~~~~--~ll~~~~~~g~~-~~a~~~~~~~~ 467 (643)
.+....|..+-. ++.-+....|+. ..+...+..+.
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 542222333322 222333333332 55666666664
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.27 E-value=21 Score=34.19 Aligned_cols=166 Identities=13% Similarity=0.086 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHHh
Q 045672 209 VRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLY----KRMKRAGFAADQSTLTSVLRACT 284 (643)
Q Consensus 209 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~ 284 (643)
++.++..=|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455677788999999999987532 334456677776665554 44556788899888888888776
Q ss_pred cCChhH-hHHHHHHHHhh--------cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHH
Q 045672 285 GLALLE-LGTQVHVHVLK--------YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQE 355 (643)
Q Consensus 285 ~~~~~~-~a~~i~~~~~~--------~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 355 (643)
....-+ .-..+...+++ ...+..+...+...|.+.+++.+|+..|-.-.++.+..+..|+--+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-
Confidence 655321 12334444444 22456777888999999999999999885322223355544444333333211
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 045672 356 ALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 356 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 400 (643)
.++...-..++. |...+++..|..+++...+
T Consensus 185 -------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 -------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122222233333 4456788888887766654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.64 E-value=23 Score=33.95 Aligned_cols=131 Identities=12% Similarity=0.014 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCChhhHHHHHHHHh
Q 045672 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELL----IFMLREGVRPNMFTYSAVLRACD 186 (643)
Q Consensus 111 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~ 186 (643)
.|.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445566778889999999987632 234556677776665554 44556788888887777777665
Q ss_pred chhhH---H-----HHHHHHHHhC--CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCC
Q 045672 187 SLIIL---R-----QLHCGIIKVG--FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNS 252 (643)
Q Consensus 187 ~~~~~---~-----~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 252 (643)
....- . +...+-.+.| -.-|+.....+...|.+.+++.+|+..|-.-.++.+..+..|+.-+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 44321 1 3333334444 34466777778888888888888888774222222245544444444433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.32 E-value=4.8 Score=30.70 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=50.1
Q ss_pred CcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 54 DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 54 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
+..+..+-++.+...++-|++....+.|++|.+.+++..|.++++.+...- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 555777888888888899999999999999999999999999999887643 233456666654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.79 E-value=4.4 Score=30.91 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
+.-+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4556777778888888999999999999999999999999999999987533 33456777664
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=85.27 E-value=16 Score=38.94 Aligned_cols=78 Identities=12% Similarity=0.023 Sum_probs=40.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCc--hhHHhHHHHHHHh---
Q 045672 244 IIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHD--LILNNALLDMYCK--- 318 (643)
Q Consensus 244 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~Li~~y~~--- 318 (643)
....+.-.|+++.|++++.+. ...|.+.+...+.-+.-++- ... +....++ ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~----lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSS----TRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCc----ccccCCCcccccHHHHHHHHHHHhh
Confidence 455566789999999987644 24455666555554433332 111 1111111 2224567777765
Q ss_pred cCCHHHHHHHHhhc
Q 045672 319 CGSLEDAMSVFSRM 332 (643)
Q Consensus 319 ~g~~~~A~~~~~~m 332 (643)
..+..+|...|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 56777777776655
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.48 E-value=11 Score=28.48 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=66.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 045672 86 ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165 (643)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 165 (643)
.....++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||..+|-+|-. .+.|..+++..-+.+
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 44568889888888877654 33333334455678999999999999999999999988765 567888888888878
Q ss_pred HHHCCCCCChhhHHH
Q 045672 166 MLREGVRPNMFTYSA 180 (643)
Q Consensus 166 m~~~g~~p~~~t~~~ 180 (643)
+..+| .|....|..
T Consensus 94 la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 94 LGGSS-DPALADFAA 107 (115)
T ss_dssp HHTCS-SHHHHHHHH
T ss_pred HHhCC-CHHHHHHHH
Confidence 87666 455444543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.10 E-value=12 Score=28.41 Aligned_cols=90 Identities=16% Similarity=0.136 Sum_probs=65.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 045672 86 ARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIF 165 (643)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 165 (643)
.....++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||..+|-+|-. .+.|..+++..-+.+
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 44568889888888877654 33333334455678999999999999999999999998865 456777777777777
Q ss_pred HHHCCCCCChhhHHH
Q 045672 166 MLREGVRPNMFTYSA 180 (643)
Q Consensus 166 m~~~g~~p~~~t~~~ 180 (643)
+..+| .|....|..
T Consensus 95 la~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 95 LARSQ-DPRIQTFVN 108 (116)
T ss_dssp HTTCC-CHHHHHHHH
T ss_pred HHhCC-CHHHHHHHH
Confidence 76665 444444443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.67 E-value=28 Score=34.44 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=10.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 045672 343 MISGLAQNGYSQEALKLFESMK 364 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~ 364 (643)
++..|...|++.+|++++.++.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~ 126 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLL 126 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444455555444444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.66 E-value=7.7 Score=38.56 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChHHH
Q 045672 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK----FYGIDPGREHY 411 (643)
Q Consensus 341 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 411 (643)
..++..+...|++++|+..++.+.... +-++..+..++.++...|+..+|.+.|+.+.+ ++|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 445667777888888888887776642 44677888888888888888888888877644 35777776543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.62 E-value=6.2 Score=33.39 Aligned_cols=23 Identities=9% Similarity=0.249 Sum_probs=13.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Q 045672 413 CMIDLLGRAGKLQEAVKLIHEMP 435 (643)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~ 435 (643)
-+..+|.+.|++++|+.+++.+|
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCHHHHHHHHhcCC
Confidence 34555556666666666666554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.87 E-value=9.8 Score=32.17 Aligned_cols=69 Identities=4% Similarity=-0.091 Sum_probs=47.5
Q ss_pred CCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHhCC-CCCCH-------hhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045672 34 TITRNSSSLLDDFTRFCYQRDLPRAMKAMHAMQCHG-VRADS-------VTYAELIKCCLARHAVEEAKLVHNHVLS 102 (643)
Q Consensus 34 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 102 (643)
.|....-.+-.-+..+...|.++.|+-+...+.... ..|+. .++..+.+++...+++..|...|++.++
T Consensus 15 ~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 15 VPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344444556666888899999999998888765421 23332 2567778888899999999999998754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.59 E-value=17 Score=39.38 Aligned_cols=52 Identities=13% Similarity=0.020 Sum_probs=38.0
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMP 435 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (643)
|...|+++.|+.+-++... -.+.+..+|..|+..|...|+++.|+-.++.+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4556788888877777765 233356778888888888888888888877775
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.47 E-value=40 Score=31.99 Aligned_cols=168 Identities=11% Similarity=0.029 Sum_probs=102.9
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhc
Q 045672 309 NNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKL----FESMKVSRIKPNYITIVGVLFACSH 384 (643)
Q Consensus 309 ~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~~ 384 (643)
+.++..=|.+.+++++|.+++.. -...+.++|+...|-++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45677788889999999887543 23456677887766665 4455667888998888777776654
Q ss_pred cCCHH-HHHHHHHHhHH---hcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CC
Q 045672 385 AGFVE-DGWNHFKSMKK---FYGI--DPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVH---RN 455 (643)
Q Consensus 385 ~g~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~---g~ 455 (643)
-..-+ .=.++.+.+.+ +.|- .-++.....+...|.+.|++.+|..-|-.- ..-|...+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-THDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCccHHHHHHHHHHHHHhcCCCC
Confidence 32111 11233333332 1122 236778888999999999999999877522 111355566665554444 44
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 456 TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 456 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..++-...- ..+--|.-.|+...|..+++...+
T Consensus 184 ~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333222111 122235567888899888887653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 643 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 6e-06
Identities = 20/183 (10%), Positives = 55/183 (30%), Gaps = 10/183 (5%)
Query: 310 NALLDMYCKCGSLEDAMSVFSRMIQKDVI---SWSTMISGLAQNGYSQEALKLFESMKVS 366
L ++ + + A++ + R + + + G A+ + +
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR--RAI 264
Query: 367 RIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMI-DLLGRAGKLQ 425
++P++ L + P + ++ G ++
Sbjct: 265 ELQPHFPDAYCNLANALKE--KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322
Query: 426 EAVKLIHE-MPYEPDAVTWRALLGACKVHR-NTDLAICAAKKILNLDPQDPGTYILLSNI 483
EAV+L + + P+ + L + + A+ K+ + + P Y + N
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382
Query: 484 YAN 486
Sbjct: 383 LKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 3e-05
Identities = 25/201 (12%), Positives = 69/201 (34%), Gaps = 10/201 (4%)
Query: 298 HVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKD---VISWSTMISGLAQNGYSQ 354
+ + + + L ++ G + A+ F + + D + ++ + + L +
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220
Query: 355 EALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGR-EHYSC 413
A+ + S + + + G ++ + ++ + + P + Y
Sbjct: 221 RAVAAYLRAL-SLSPNHAVVHGNLACVYYEQGLIDLAIDTYR---RAIELQPHFPDAYCN 276
Query: 414 MIDLLGRAGKLQEAVKLIHE--MPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471
+ + L G + EA + A + L + N + A+ +K L + P
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336
Query: 472 QDPGTYILLSNIYANSQKWDE 492
+ + L+++ K E
Sbjct: 337 EFAAAHSNLASVLQQQGKLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 1e-04
Identities = 50/351 (14%), Positives = 102/351 (29%), Gaps = 19/351 (5%)
Query: 213 LIDIYAKLGELRNAECVFNEMPTRD---LVVWNSIIGGFAQNSDVDEALNLYKRM--KRA 267
L + G+ AE ++ ++ V + Q +D + + +
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMS 327
A S L +V + L + + + D +N A +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGF 387
V + D+ + + L + E K + + + + G
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 388 VEDGWNHFKSMKKFYGIDPGR-EHYSCMIDLLGRAGKLQEAVKLIHEMP--YEPDAVTWR 444
+ +H +K +DP + Y + ++L A AV AV
Sbjct: 185 IWLAIHH---FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241
Query: 445 ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504
L DLAI ++ + L P P Y L+N E + T
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 505 ITKEPGCSWI--------EVNKQIHAFNVADSSHPQIDKINKHLKHLIQKL 547
T + + + + + + A P+ + +L ++Q+
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 643 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.03 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.98 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.97 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.95 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.92 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.91 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.9 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.84 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.8 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.48 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.47 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.44 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.41 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.37 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.34 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.33 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.3 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.26 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.25 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.22 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.2 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.18 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.09 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.06 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.98 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.95 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.9 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.88 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.81 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.78 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.75 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.75 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.72 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.69 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.68 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.56 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.44 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.42 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.34 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.31 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.27 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.14 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.12 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.08 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.89 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.85 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.67 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.63 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.13 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.61 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.32 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.95 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.68 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.03 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.96 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.72 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.67 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 84.27 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3.7e-20 Score=187.43 Aligned_cols=368 Identities=12% Similarity=0.112 Sum_probs=258.5
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCChhHHHHHHccCCC---CCcchHHHHHHHHHhCCChhHH
Q 045672 83 CCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFSLLEEAQVLFDQMPE---RNVVSWTTMISAYCDAKMNDKA 159 (643)
Q Consensus 83 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 159 (643)
.+.+.|++++|.+.++.+++..+ .+...+..+..+|.+.|++++|...|++..+ .+..+|..+...|.+.|++++|
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccc
Confidence 34455666666666666655432 2445555566666666666666666665433 2345667777777777777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhh---CCCC
Q 045672 160 LELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNE---MPTR 236 (643)
Q Consensus 160 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~---~~~~ 236 (643)
++.+....+.. |........ ....+...+....+...... ....
T Consensus 87 ~~~~~~~~~~~--~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (388)
T d1w3ba_ 87 IEHYRHALRLK--PDFIDGYIN-------------------------------LAAALVAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp HHHHHHHHHHC--TTCHHHHHH-------------------------------HHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred ccccccccccc--ccccccccc-------------------------------ccccccccccccccccccccccccccc
Confidence 77777776542 111111110 11111111222222111111 1122
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHH
Q 045672 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDM 315 (643)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~ 315 (643)
....+..........+....+...+.+..... +-+...+..+...+...|..+.|...+..+.+ .+.+...+..+...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 212 (388)
T d1w3ba_ 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV 212 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhh
Confidence 33444455555666667777777766666542 23455666666677777788888887777777 45556677888889
Q ss_pred HHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHH
Q 045672 316 YCKCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHAGFVEDG 391 (643)
Q Consensus 316 y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 391 (643)
|...|++++|...|+... ..+...|..+...+.+.|++++|+..|++..+. .|+ ..++..+...+...|++++|
T Consensus 213 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A 290 (388)
T d1w3ba_ 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHH
T ss_pred hhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999988764 345667888889999999999999999999874 454 67788889999999999999
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 045672 392 WNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNL 469 (643)
Q Consensus 392 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 469 (643)
.+.++..... .+.+...+..+...+.+.|++++|.+.|++. ...|+ ..+|..+...+...|++++|+..+++++++
T Consensus 291 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 291 EDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998873 4567788899999999999999999999886 55564 567888889999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHccCC
Q 045672 470 DPQDPGTYILLSNIYANSQK 489 (643)
Q Consensus 470 ~p~~~~~~~~l~~~~~~~g~ 489 (643)
+|+++.+|..|+.+|.+.|+
T Consensus 369 ~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 369 SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.4e-19 Score=181.34 Aligned_cols=352 Identities=12% Similarity=0.081 Sum_probs=284.8
Q ss_pred HHHHHHcCCChhHHHHHHccCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhH
Q 045672 115 LLNMHVKFSLLEEAQVLFDQMPE--R-NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIIL 191 (643)
Q Consensus 115 li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 191 (643)
+...+.+.|++++|.+.|+++.+ | +...|..+...|.+.|++++|++.|++..+. .|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~----------------- 65 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPL----------------- 65 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------
Confidence 44567788999999999988764 3 5678889999999999999999999998764 233
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 045672 192 RQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAG 268 (643)
Q Consensus 192 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 268 (643)
+..++..+...|.+.|++++|...+..... .+...+..........+....+...........
T Consensus 66 --------------~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (388)
T d1w3ba_ 66 --------------LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp --------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred --------------CHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 234556688889999999999999987754 234445555555666667777777666665554
Q ss_pred CCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHH
Q 045672 269 FAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMI 344 (643)
Q Consensus 269 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li 344 (643)
. ................+....+......... .+.+...+..+...+...|++++|...+++..+ .+...|..+.
T Consensus 132 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 210 (388)
T d1w3ba_ 132 P-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210 (388)
T ss_dssp T-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred c-ccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHh
Confidence 3 3344444555556677777777777777777 666677888899999999999999999987643 3567889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 045672 345 SGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL 424 (643)
Q Consensus 345 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 424 (643)
..+...|++++|+..|++....+ ..+...+..+...+.+.|++++|...|+++.+. .+.+...+..+...|...|++
T Consensus 211 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~ 287 (388)
T d1w3ba_ 211 NVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCH
T ss_pred hhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999988754 445677788888999999999999999998872 334577899999999999999
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 425 QEAVKLIHEM--PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 425 ~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
++|.+.++.. ..+.+...+..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999877 23356778888889999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 045672 503 R 503 (643)
Q Consensus 503 ~ 503 (643)
.
T Consensus 368 l 368 (388)
T d1w3ba_ 368 I 368 (388)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=5.3e-13 Score=130.89 Aligned_cols=240 Identities=12% Similarity=0.028 Sum_probs=160.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCC
Q 045672 243 SIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGS 321 (643)
Q Consensus 243 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~ 321 (643)
.....+.+.|++++|+..|++..+.. +-+..++..+..++...|+++.|...+..+.+ .+.+...+..+...|...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 45667788888888888888888753 22455666666666666666666666666665 33344555555555555666
Q ss_pred HHHHHHHHhhcCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 045672 322 LEDAMSVFSRMIQKDVI---SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSM 398 (643)
Q Consensus 322 ~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 398 (643)
+++|.+.++.....+.. .+........ ..+.......+..+...+...++.+.|...
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 65555555544211100 0000000000 000000111122233445677788888877
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 045672 399 KKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 399 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 476 (643)
.+.....++...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|+..++++++++|+++.+
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence 764333446678888899999999999999999886 3334 56788889999999999999999999999999999999
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 477 YILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 477 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+..++.+|.+.|++++|.+.+++..+.
T Consensus 243 ~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 243 RYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.4e-12 Score=127.84 Aligned_cols=266 Identities=14% Similarity=0.080 Sum_probs=194.7
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCh
Q 045672 212 ALIDIYAKLGELRNAECVFNEMPT---RDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLAL 288 (643)
Q Consensus 212 ~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 288 (643)
.....|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 456678899999999999998754 356789999999999999999999999998853 2356778888889999999
Q ss_pred hHhHHHHHHHHhhcCCchh-HHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045672 289 LELGTQVHVHVLKYDHDLI-LNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSR 367 (643)
Q Consensus 289 ~~~a~~i~~~~~~~~~~~~-~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 367 (643)
++.|...+..+.+..|+.. .......... . .+.......+..+...+...+|.+.|.+.....
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 166 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAG-G---------------AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 166 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhh-h---------------cccccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 9999999999988444322 1111110000 0 011111112223344566778888888877643
Q ss_pred -CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 045672 368 -IKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWR 444 (643)
Q Consensus 368 -~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 444 (643)
-.++...+..+...+...|++++|...|+..... .+-+...|..+...|.+.|++++|.+.|++. ...| +..+|.
T Consensus 167 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 244 (323)
T d1fcha_ 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 244 (323)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHH
Confidence 2335667778888899999999999999998873 2335778889999999999999999999887 4445 466899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch-----------HHHHHHHHHccCChhHHHHH
Q 045672 445 ALLGACKVHRNTDLAICAAKKILNLDPQDPGT-----------YILLSNIYANSQKWDEVAEV 496 (643)
Q Consensus 445 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~~~ 496 (643)
.+..+|...|++++|+..|++++++.|++... +..+..++...|+.+.+...
T Consensus 245 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 245 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999988876543 44566677777777655443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1.3e-08 Score=99.67 Aligned_cols=194 Identities=11% Similarity=0.021 Sum_probs=137.4
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHH
Q 045672 309 NNALLDMYCKCGSLEDAMSVFSRMIQ-------K----DVISWSTMISGLAQNGYSQEALKLFESMKVSRI----KPNYI 373 (643)
Q Consensus 309 ~~~Li~~y~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~ 373 (643)
+..+...|...|++..|...+..... + ....+..+...+...|+++.+...+.+...... .....
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 34556667777887777777665421 1 122455666778888999999998888765321 22244
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHH
Q 045672 374 TIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG-----REHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-----DAVT 442 (643)
Q Consensus 374 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~ 442 (643)
++......+...+....+...+........-... ...+..+...+...|++++|.+.+++. ...| ....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 5555666777888888888887776553222221 234566677888999999999999877 2211 2345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 443 WRALLGACKVHRNTDLAICAAKKILNL------DPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 443 ~~~ll~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+..+...+...|++++|...+++++.. .|....++..++.+|...|++++|.+.+++..+
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666778899999999999999998743 355567889999999999999999999988764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=2.7e-08 Score=95.79 Aligned_cols=184 Identities=11% Similarity=0.093 Sum_probs=132.4
Q ss_pred hhHhHHHHHHHHhh--cCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-C-hhhHHHHHHHHHhcCCHHHHHHHHH
Q 045672 288 LLELGTQVHVHVLK--YDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQ--K-D-VISWSTMISGLAQNGYSQEALKLFE 361 (643)
Q Consensus 288 ~~~~a~~i~~~~~~--~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--~-~-~~~~~~li~~~~~~g~~~~A~~l~~ 361 (643)
..+.+..+++++++ .+.+...+..++..+.+.|+.+.|..+|+++.+ + + ...|...+....+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45677778888776 344556777888888888888888888887743 2 2 3368888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC----CC
Q 045672 362 SMKVSRIKPNYITIVGVLF-ACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM----PY 436 (643)
Q Consensus 362 ~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 436 (643)
++.+.+. .+...|..... -+...|+.+.|..+|+.+.+. .+.+...+..+++.+.+.|++++|..+|++. +.
T Consensus 159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 8877542 22333333222 234457888888888888874 3445677888888888888888888888875 33
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 045672 437 EPD--AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDP 474 (643)
Q Consensus 437 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 474 (643)
.|+ ...|...+.--..+|+.+.+..+++++.+..|.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 332 45788888877888888888888888888777653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=8.8e-08 Score=93.57 Aligned_cols=284 Identities=10% Similarity=-0.014 Sum_probs=198.9
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC--CC------cchHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHH
Q 045672 213 LIDIYAKLGELRNAECVFNEMPT--RD------LVVWNSIIGGFAQNSDVDEALNLYKRMKRAGF-AAD----QSTLTSV 279 (643)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~l 279 (643)
....+...|++++|.++|++..+ |+ ..+++.+...|...|++++|+..|++..+... .++ ..++..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 45567889999999999987532 22 24677788899999999999999998765311 112 2345556
Q ss_pred HHHHhcCChhHhHHHHHHHHhh----c-CC----chhHHhHHHHHHHhcCCHHHHHHHHhhcCC--------CChhhHHH
Q 045672 280 LRACTGLALLELGTQVHVHVLK----Y-DH----DLILNNALLDMYCKCGSLEDAMSVFSRMIQ--------KDVISWST 342 (643)
Q Consensus 280 l~a~~~~~~~~~a~~i~~~~~~----~-~~----~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~--------~~~~~~~~ 342 (643)
...+...|++..+...+..+.. . .+ ....+..+...|...|+++.+...+..... ....++..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 6677888999999999888776 1 11 123556677889999999999999887622 12345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC--ChHHHHHH
Q 045672 343 MISGLAQNGYSQEALKLFESMKVS--RIKPN----YITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP--GREHYSCM 414 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~--g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l 414 (643)
+...+...|+..++...+.+.... ..... ...+..+...+...|+.++|...+....+...-.+ ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 677788899999999988776442 11111 23345556677889999999999988765211111 23456668
Q ss_pred HHHHHhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------cchH
Q 045672 415 IDLLGRAGKLQEAVKLIHEM-------PYEPDA-VTWRALLGACKVHRNTDLAICAAKKILNLDPQD---------PGTY 477 (643)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~ 477 (643)
...|...|++++|.+.+++. +..|+. .++..+...+...|++++|+..+++++++.+.. ...+
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~ 337 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 337 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence 88999999999999998875 333433 367777788999999999999999998864321 1233
Q ss_pred HHHHHHHHccCChhHHHHH
Q 045672 478 ILLSNIYANSQKWDEVAEV 496 (643)
Q Consensus 478 ~~l~~~~~~~g~~~~a~~~ 496 (643)
..+...+...++.+++.+-
T Consensus 338 ~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 338 AQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHhcCCChHHHHH
Confidence 4455556667777777553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=5e-08 Score=93.88 Aligned_cols=183 Identities=10% Similarity=0.037 Sum_probs=144.2
Q ss_pred cCCHHHHHHHHhhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 045672 319 CGSLEDAMSVFSRMI----QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNH 394 (643)
Q Consensus 319 ~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 394 (643)
.+..++|..+|++.. ..+...|...+..+...|+.++|..+|+++...........|...+..+.+.|+.+.|+++
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 344678888888764 2356678888999999999999999999998753333355788889999999999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHH-HhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 395 FKSMKKFYGIDPGREHYSCMIDLL-GRAGKLQEAVKLIHEM--PYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 395 ~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
|+.+.+. .+.+...|...+... ...|+.+.|..+|+.+ ....+...|...+..+...|+.+.|..+|++++...|
T Consensus 157 ~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 157 FKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 9999873 333445555555443 3468999999999888 2234577899999999999999999999999999876
Q ss_pred CCcc----hHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 472 QDPG----TYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 472 ~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
.++. .|...+..-...|+.+.+.++.+++.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5543 6777777778889999999999988764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=9e-09 Score=96.34 Aligned_cols=220 Identities=10% Similarity=-0.046 Sum_probs=128.2
Q ss_pred hhHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHHHH
Q 045672 254 VDEALNLYKRMKRAGF-AA--DQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMSVF 329 (643)
Q Consensus 254 ~~~A~~~~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~~~ 329 (643)
.+.++.-+.+...... .+ ...++..+..++.+.|+++.|...+..+++ .+.+..+++.+..+|.+.|++++|...|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 4445555555544311 11 112444455566667777777777777776 4555667778888888888888888888
Q ss_pred hhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 045672 330 SRMIQ---KDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP 406 (643)
Q Consensus 330 ~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 406 (643)
++..+ .+..+|..+...|...|++++|++.|++..+.. +.+......+..++.+.+..+....+...... ..+
T Consensus 95 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 170 (259)
T d1xnfa_ 95 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDK 170 (259)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCC
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cch
Confidence 87743 245577778888888888888888888887743 22333333344444455554444444444443 122
Q ss_pred ChHHHHHHHHHHHhcCC----HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHH
Q 045672 407 GREHYSCMIDLLGRAGK----LQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYI 478 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~----~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 478 (643)
....++ ++..+..... .+.+...+... ...|+ ..+|..+...+...|++++|+..+++++..+|++...|.
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 222222 2222222222 22222222111 11122 235666777788899999999999999999998764443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=2.8e-08 Score=95.85 Aligned_cols=209 Identities=14% Similarity=0.174 Sum_probs=124.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhc
Q 045672 240 VWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKC 319 (643)
Q Consensus 240 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~ 319 (643)
.|+.+...+.+.+.+++|+++++++++. .|+.. ..|+.....+...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~--------------------------------~a~~~r~~~l~~l 90 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANY--------------------------------TVWHFRRVLLKSL 90 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCH--------------------------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCCh--------------------------------HHHHHHHHHHHHh
Confidence 4555666666777777777777777764 44333 2334444444444
Q ss_pred C-CHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 045672 320 G-SLEDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHF 395 (643)
Q Consensus 320 g-~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 395 (643)
| ++++|...++... ..+..+|+.+...+.+.|++++|++.++++.+.. +-+...|..+...+.+.|++++|+..+
T Consensus 91 ~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~ 169 (315)
T d2h6fa1 91 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYV 169 (315)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3 3566666665542 2345566666666666677777777777766632 223566666666666777777777777
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045672 396 KSMKKFYGIDPGREHYSCMIDLLGRAGK------LQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKIL 467 (643)
Q Consensus 396 ~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 467 (643)
+.+.+. -+.+...|+.+...+.+.+. +++|.+.+.++ ...| +...|..+...+. ....+++...+++++
T Consensus 170 ~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 170 DQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLL 246 (315)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHH
T ss_pred HHHHHH--CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHH
Confidence 776652 12244555555555555444 56676666554 3334 5666766655543 444677888888888
Q ss_pred hcCCCC--cchHHHHHHHHHc
Q 045672 468 NLDPQD--PGTYILLSNIYAN 486 (643)
Q Consensus 468 ~~~p~~--~~~~~~l~~~~~~ 486 (643)
++.|+. +..+..++.+|..
T Consensus 247 ~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 247 DLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHTTTCCCHHHHHHHHHHHHH
T ss_pred HhCCCcCCHHHHHHHHHHHHH
Confidence 877764 3445566676644
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=6.5e-09 Score=97.36 Aligned_cols=194 Identities=13% Similarity=0.012 Sum_probs=138.4
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 045672 306 LILNNALLDMYCKCGSLEDAMSVFSRMI---QKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFA 381 (643)
Q Consensus 306 ~~~~~~Li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 381 (643)
..++..+...|.+.|++++|...|++.. ..++.+|+.+..+|.+.|++++|++.|++..+. .|+ ..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHH
Confidence 3567778899999999999999999874 347789999999999999999999999999885 454 6678888899
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----HcCCH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPDAVTWRALLGACK----VHRNT 456 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~----~~g~~ 456 (643)
+...|++++|...|+...+. .+.+......+...+.+.+..+.+..+.... ...++...++. +..+. ..+..
T Consensus 115 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLM 191 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHH
Confidence 99999999999999999874 2334444444455555666555554444333 11122222221 11211 12233
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 457 DLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 457 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
+.+...+.......|....+|..++.+|...|++++|.+.+++.....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 444444444445556666788999999999999999999999988644
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=2e-08 Score=96.88 Aligned_cols=192 Identities=7% Similarity=0.058 Sum_probs=158.8
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 045672 307 ILNNALLDMYCKCGSLEDAMSVFSRMIQ---KDVISWSTMISGLAQNG-YSQEALKLFESMKVSRIKPN-YITIVGVLFA 381 (643)
Q Consensus 307 ~~~~~Li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 381 (643)
.+++.+...+.+.+..++|..+++++.+ .+...|+....++...| ++++|+..+++..+. .|+ ..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHH
Confidence 4556677778899999999999999854 35668898888888876 599999999999874 454 7788888899
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRN---- 455 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~---- 455 (643)
+...|++++|+..+..+.+. -+.+...|..+...+.+.|++++|++.++++ ...| +...|+.+...+...+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence 99999999999999999873 3446889999999999999999999999988 4445 56788877666665554
Q ss_pred --HHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 456 --TDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 456 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+++|+..+.++++++|++...+..++.++...| .+++.+.++...+.
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence 688999999999999999999999998877655 57888888877653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.84 E-value=4.1e-09 Score=103.03 Aligned_cols=265 Identities=9% Similarity=-0.019 Sum_probs=184.8
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC--CC-cchHHHHHHH----------HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 045672 213 LIDIYAKLGELRNAECVFNEMPT--RD-LVVWNSIIGG----------FAQNSDVDEALNLYKRMKRAGFAADQSTLTSV 279 (643)
Q Consensus 213 li~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 279 (643)
++....+.+..++|.+++++..+ |+ ...|+..-.. +...|.+++|+.+++...+.. +-+...+...
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~ 113 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHR 113 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHh
Confidence 33334444445889988887754 43 3455543322 223345788999999888753 2245555555
Q ss_pred HHHHhcCC--hhHhHHHHHHHHhh-cCCchhHHh-HHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCC
Q 045672 280 LRACTGLA--LLELGTQVHVHVLK-YDHDLILNN-ALLDMYCKCGSLEDAMSVFSRMIQK---DVISWSTMISGLAQNGY 352 (643)
Q Consensus 280 l~a~~~~~--~~~~a~~i~~~~~~-~~~~~~~~~-~Li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~ 352 (643)
..++...+ +.+.+...+..+.+ .+.+...+. .+...+...|..++|...++...+. +..+|+.+...+.+.|+
T Consensus 114 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~ 193 (334)
T d1dcea1 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 193 (334)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred hHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 55555544 57889999999988 455555554 4457778899999999999988653 56788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 045672 353 SQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIH 432 (643)
Q Consensus 353 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 432 (643)
+++|...+++.... .|+.. .....+...+..+++...+..... .-+++...+..+...+...|+.++|.+.+.
T Consensus 194 ~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 266 (334)
T d1dcea1 194 QPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQ 266 (334)
T ss_dssp CCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88887666554432 22222 223334455666677777777765 334455566677778888899999999888
Q ss_pred hC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 433 EM-PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 433 ~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
+. +..|+ ..+|..+...+...|++++|+..++++++++|.+...|..|...+.
T Consensus 267 ~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 267 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 76 44453 4577788888999999999999999999999998888888877665
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.80 E-value=2.7e-09 Score=104.38 Aligned_cols=253 Identities=11% Similarity=-0.000 Sum_probs=177.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH-H---HHHHHHh-------cCChhHhHHHHHHHHhh-cCCchhHH
Q 045672 242 NSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTL-T---SVLRACT-------GLALLELGTQVHVHVLK-YDHDLILN 309 (643)
Q Consensus 242 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~---~ll~a~~-------~~~~~~~a~~i~~~~~~-~~~~~~~~ 309 (643)
..++......+..++|++++.+..+. .|+..+. + .++.... ..|.++.+...++.+.+ .+.+...+
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~ 110 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTW 110 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 33444444445568999999999874 5665442 2 2223322 34557788888888888 66677777
Q ss_pred hHHHHHHHhcC--CHHHHHHHHhhcCC---CChhhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 045672 310 NALLDMYCKCG--SLEDAMSVFSRMIQ---KDVISWST-MISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACS 383 (643)
Q Consensus 310 ~~Li~~y~~~g--~~~~A~~~~~~m~~---~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 383 (643)
..+...+...+ ++++|...+.++.. ++...|.. ....+...|..++|+..++++.... +-+...|..+...+.
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 77777776655 48899998888743 34555544 3466777899999999999888753 234677888888888
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045672 384 HAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM--PYEPDAVTWRALLGACKVHRNTDLAIC 461 (643)
Q Consensus 384 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~ 461 (643)
..|++++|...+....+. .|+ ...+...+...+..+++...+... ...++...+..+...+...|+.++|..
T Consensus 190 ~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHH
Confidence 888887776555444331 111 122333445566666777666554 222344455666677788899999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 462 AAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 462 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
.+.+.+..+|.+..++..++.+|...|++++|.+.+++..+.
T Consensus 264 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999873
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.48 E-value=4.8e-07 Score=80.49 Aligned_cols=97 Identities=16% Similarity=0.132 Sum_probs=59.6
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 045672 406 PGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNI 483 (643)
Q Consensus 406 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 483 (643)
|+...+......|.+.|++++|++.|+++ ...| +...|..+..+|...|+++.|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44444445555566666666666666554 2223 444566666666666666666666666666666666666666666
Q ss_pred HHccCChhHHHHHHHHHHh
Q 045672 484 YANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 484 ~~~~g~~~~a~~~~~~m~~ 502 (643)
|...|++++|...+++..+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=3.2e-06 Score=74.36 Aligned_cols=141 Identities=8% Similarity=-0.107 Sum_probs=98.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 045672 313 LDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGW 392 (643)
Q Consensus 313 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 392 (643)
...+...|+++.|.+.|.++..++...|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4456778888999888888888888888888888888899999999888888743 233667777888888888888888
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 045672 393 NHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 393 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 471 (643)
..|++.... .+++... .|...| ...+.+ ..++..+..++...|++++|.+.+++++++.|
T Consensus 91 ~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 888887652 2222100 000000 001111 23455566678888999999999999888887
Q ss_pred CC
Q 045672 472 QD 473 (643)
Q Consensus 472 ~~ 473 (643)
..
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 64
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.8e-06 Score=69.03 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=55.1
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHH
Q 045672 380 FACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGACKVHRNTD 457 (643)
Q Consensus 380 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~ 457 (643)
..+...|++++|...|....+. -+.+...|..+..+|.+.|++++|++.+++. ... .+...|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 3444555555555555555542 2234445555555555555555555555544 112 24445555555566666666
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHH
Q 045672 458 LAICAAKKILNLDPQDPGTYILLSNI 483 (643)
Q Consensus 458 ~a~~~~~~~~~~~p~~~~~~~~l~~~ 483 (643)
+|+..++++++.+|+++.++..+.++
T Consensus 89 ~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 89 EAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 66666666666666665555555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=8.6e-07 Score=70.99 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=81.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChh
Q 045672 414 MIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD 491 (643)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 491 (643)
-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 356788999999999999987 3344 66789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 045672 492 EVAEVRKTMRAR 503 (643)
Q Consensus 492 ~a~~~~~~m~~~ 503 (643)
+|...+++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999999864
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=2.5e-06 Score=80.75 Aligned_cols=191 Identities=11% Similarity=-0.003 Sum_probs=129.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--HHHH
Q 045672 310 NALLDMYCKCGSLEDAMSVFSRMIQ-----KD----VISWSTMISGLAQNGYSQEALKLFESMKVSR---IKPN--YITI 375 (643)
Q Consensus 310 ~~Li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~ 375 (643)
.-....|..+|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++....- -.+. ..++
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 120 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence 4456778889999999888887632 11 3478888999999999999999998765421 0111 3455
Q ss_pred HHHHHHHh-ccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC---C----CH-H
Q 045672 376 VGVLFACS-HAGFVEDGWNHFKSMKKFYGIDPG----REHYSCMIDLLGRAGKLQEAVKLIHEM-PYE---P----DA-V 441 (643)
Q Consensus 376 ~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~---p----~~-~ 441 (643)
..+...|. ..|++++|.+.+....+-.....+ ..++..+...|.+.|++++|.+.|+++ ... + .. .
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence 56666664 469999999999887652211111 345788899999999999999999886 111 1 11 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc-----hHHHHHHHHHc--cCChhHHHHHHHHH
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPG-----TYILLSNIYAN--SQKWDEVAEVRKTM 500 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~m 500 (643)
.+...+-.+...|+++.|...+++..+.+|..+. .+..++.+|.. .+.+++|...|+.+
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2334445567889999999999999999876332 34556666655 35678888777543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.34 E-value=8.2e-06 Score=77.05 Aligned_cols=207 Identities=8% Similarity=-0.018 Sum_probs=109.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHH
Q 045672 241 WNSIIGGFAQNSDVDEALNLYKRMKRA----GFAAD-QSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDM 315 (643)
Q Consensus 241 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~ 315 (643)
|......|...|++++|.+.|.+..+. +-+++ ..+|..+..++...|++++|...+..+.+ .
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~-------------~ 106 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ-------------I 106 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------H
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH-------------H
Confidence 444677788888888888888877652 11111 12344444444444444444444433332 1
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCCHH
Q 045672 316 YCKCGSLEDAMSVFSRMIQKDVISWSTMISGLA-QNGYSQEALKLFESMKV----SRIKPN-YITIVGVLFACSHAGFVE 389 (643)
Q Consensus 316 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~ 389 (643)
+...|+...+ ...+..+...|. ..|++++|++.|++..+ .+..+. ..++..+...+...|+++
T Consensus 107 ~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~ 175 (290)
T d1qqea_ 107 FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (290)
T ss_dssp HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhhcccchhH-----------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHH
Confidence 1111111111 223444455553 35777777777776543 121111 334566677777888888
Q ss_pred HHHHHHHHhHHhcCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHH--cCC
Q 045672 390 DGWNHFKSMKKFYGIDPGR-----EHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD------AVTWRALLGACKV--HRN 455 (643)
Q Consensus 390 ~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~ll~~~~~--~g~ 455 (643)
+|...|+.+.+.....+.. ..+...+..+...|+++.|...+++. .+.|+ ......++.++.. .+.
T Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~ 255 (290)
T d1qqea_ 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (290)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHH
Confidence 8888887776632111111 12334455566778888888888776 22221 2234455555544 234
Q ss_pred HHHHHHHHHHHHhcCC
Q 045672 456 TDLAICAAKKILNLDP 471 (643)
Q Consensus 456 ~~~a~~~~~~~~~~~p 471 (643)
+++|+..|+++.+++|
T Consensus 256 ~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 256 LSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHhhcCH
Confidence 6677777666555543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.33 E-value=9.3e-07 Score=70.14 Aligned_cols=88 Identities=20% Similarity=0.158 Sum_probs=78.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCCh
Q 045672 413 CMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490 (643)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 490 (643)
.+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4566788899999999999887 3445 5778999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 045672 491 DEVAEVRKTM 500 (643)
Q Consensus 491 ~~a~~~~~~m 500 (643)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.30 E-value=1.4e-06 Score=77.36 Aligned_cols=115 Identities=7% Similarity=-0.155 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 045672 370 PNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALL 447 (643)
Q Consensus 370 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll 447 (643)
|+...+......+.+.|++++|+..|....+. .+.+...|..+..+|.+.|++++|+..|++. .+.|+ ..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 66666777777888888888888888887763 3446777888888888888888888888877 55564 56788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHc
Q 045672 448 GACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYAN 486 (643)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 486 (643)
.++...|++++|+..++++++++|++...+...+..+..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 889999999999999999998887655554444444443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=4.3e-06 Score=73.44 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=81.1
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHH
Q 045672 415 IDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVA 494 (643)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 494 (643)
...+...|++++|++.|+++. .|+..+|..+...+...|++++|+..|+++++++|+++.+|..++.+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 455778999999999999984 5788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 045672 495 EVRKTMRAR 503 (643)
Q Consensus 495 ~~~~~m~~~ 503 (643)
+.|++....
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=7.2e-06 Score=69.56 Aligned_cols=116 Identities=7% Similarity=-0.023 Sum_probs=89.3
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 045672 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNT 456 (643)
Q Consensus 379 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 456 (643)
...|.+.|++++|...|.+..+. .+.+...|..+...|...|++++|.+.|+++ ...| +..+|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 44567888888888888888773 2346777888888888888888888888877 3345 556888899999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHH--ccCChhHHHHH
Q 045672 457 DLAICAAKKILNLDPQDPGTYILLSNIYA--NSQKWDEVAEV 496 (643)
Q Consensus 457 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~ 496 (643)
++|+..+++++.++|+++..+..+..+.. ..+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999888777766543 34445555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=4.8e-06 Score=70.70 Aligned_cols=91 Identities=14% Similarity=0.083 Sum_probs=81.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCCh
Q 045672 413 CMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKW 490 (643)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 490 (643)
.....|.+.|++++|...|++. ...| +...|..+...+...|++++|+..++++++++|++..+|..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3456788999999999999987 3344 5678888889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhC
Q 045672 491 DEVAEVRKTMRAR 503 (643)
Q Consensus 491 ~~a~~~~~~m~~~ 503 (643)
++|.+.+++....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999864
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=3.3e-06 Score=67.74 Aligned_cols=107 Identities=16% Similarity=0.001 Sum_probs=80.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 045672 376 VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKL---QEAVKLIHEM-PYEPDA---VTWRALLG 448 (643)
Q Consensus 376 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p~~---~~~~~ll~ 448 (643)
..+++.+...+++++|.+.|+...+. -+.+..++..+..+|.+.++. ++|+++++++ ...|+. .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35667777788888888888888773 344667777888888775554 4688888876 334433 36777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 045672 449 ACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIY 484 (643)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 484 (643)
+|...|++++|+..++++++++|++..+...+..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 899999999999999999999999986665554433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.4e-05 Score=68.55 Aligned_cols=133 Identities=10% Similarity=0.017 Sum_probs=94.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 418 (643)
.+......+.+.|++++|+..|++.+..- |.. .+..+.-......+. ...|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchhH--------HHHHHHHHHHH
Confidence 45556667788888888888888776531 110 000000001111111 23567788889
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHH
Q 045672 419 GRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEV 493 (643)
Q Consensus 419 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 493 (643)
.+.|++++|...+++. ...| ++..|..+..++...|++++|+..|+++++++|+++.+...+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877 4445 6778888999999999999999999999999999999999998887766655543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.09 E-value=0.00053 Score=63.03 Aligned_cols=226 Identities=12% Similarity=0.046 Sum_probs=139.2
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHH
Q 045672 237 DLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMY 316 (643)
Q Consensus 237 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y 316 (643)
|+..+..+...+.+.+++++|+++|++..+.| |...+.. |..+|
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~---------------------------------Lg~~y 44 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFN---------------------------------LGVLY 44 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHH---------------------------------HHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHH---------------------------------HHHHH
Confidence 34566667777778888888888888887765 2333322 22223
Q ss_pred Hh----cCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hcc
Q 045672 317 CK----CGSLEDAMSVFSRMIQK-DVISWSTMISGLAQ----NGYSQEALKLFESMKVSRIKPNYITIVGVLFAC--SHA 385 (643)
Q Consensus 317 ~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~ 385 (643)
.. ..+...|...+.....+ +...+..+...+.. .++.+.|...++.....|..+.. ......... ...
T Consensus 45 ~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~-~~l~~~~~~~~~~~ 123 (265)
T d1ouva_ 45 YQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGC-ASLGGIYHDGKVVT 123 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHCSSSC
T ss_pred HcCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHH-HhhcccccCCCccc
Confidence 22 34555555555554332 33344444444433 45677788888877776532221 111111111 234
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHH
Q 045672 386 GFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR----AGKLQEAVKLIHEMPYEPDAVTWRALLGACKV----HRNTD 457 (643)
Q Consensus 386 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~ 457 (643)
.....+...+..... ..+...+..|...|.. ..+...+...++......+......+...+.. ..+++
T Consensus 124 ~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 124 RDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred chhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchh
Confidence 456666666666554 2455666667666665 44566677776665323456666555555544 56899
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHc----cCChhHHHHHHHHHHhCCC
Q 045672 458 LAICAAKKILNLDPQDPGTYILLSNIYAN----SQKWDEVAEVRKTMRARGI 505 (643)
Q Consensus 458 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 505 (643)
.|+..|+++.+.+ ++.++..|+.+|.+ ..+.++|.++|++..+.|-
T Consensus 200 ~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 9999999998875 45688899999986 4489999999999988774
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=4e-05 Score=65.52 Aligned_cols=62 Identities=11% Similarity=-0.008 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+|+.+..+|.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 56667788999999999999999999999999999999999999999999999999999874
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.98 E-value=7.2e-05 Score=62.57 Aligned_cols=63 Identities=16% Similarity=0.035 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 441 VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 441 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
.+|..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...|++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356677788899999999999999999999999999999999999999999999999988763
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=4.2e-05 Score=61.84 Aligned_cols=92 Identities=10% Similarity=0.100 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc-------hHHHHH
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPG-------TYILLS 481 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 481 (643)
+-.+...|.+.|++++|++.|++. ...| +...|..+..+|...|+++.|+..++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345667788889999999988877 3334 5778888889999999999999999999999887665 556677
Q ss_pred HHHHccCChhHHHHHHHHHHh
Q 045672 482 NIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 482 ~~~~~~g~~~~a~~~~~~m~~ 502 (643)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 778888999999999987764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.95 E-value=9.1e-05 Score=63.08 Aligned_cols=143 Identities=8% Similarity=-0.044 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
..+.-....+.+.|++++|+..|++.+.. .|. . .....+. ......+ ....|+.+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~----------~-~~~~~~~-~~~~~~~--------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEM----------E-YGLSEKE-SKASESF--------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTT----------C-CSCCHHH-HHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHH----------h-hccchhh-hhhcchh--------HHHHHHhHHHH
Confidence 34555666777778888888777765431 000 0 0000000 0011111 12356667888
Q ss_pred HHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChh-HHH
Q 045672 418 LGRAGKLQEAVKLIHEM-PYE-PDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWD-EVA 494 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~a~ 494 (643)
|.+.|++++|+..+++. ... .+...|..+..++...|++++|+..++++++++|+++.+...+..+....+... ...
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k 153 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999877 333 467788889999999999999999999999999999999888888877766554 355
Q ss_pred HHHHHHHh
Q 045672 495 EVRKTMRA 502 (643)
Q Consensus 495 ~~~~~m~~ 502 (643)
+++..|-+
T Consensus 154 k~~~~~f~ 161 (168)
T d1kt1a1 154 RTYANMFK 161 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 56555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.90 E-value=0.00017 Score=61.38 Aligned_cols=130 Identities=14% Similarity=0.081 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHH
Q 045672 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDP-GREHYSCMIDLLG 419 (643)
Q Consensus 341 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 419 (643)
......+...|++++|++.|++.++. +............. .+.| ....|..+..+|.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~----------~~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA----------KLQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG----------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH----------HhChhhHHHHHHHHHHHH
Confidence 34455677788888888888876541 00000001111100 1112 3456777888899
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhH
Q 045672 420 RAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDE 492 (643)
Q Consensus 420 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 492 (643)
+.|++++|+..++++ .+.| +...|..+..++...|++++|+..|+++++++|++..++..+..++.+.....+
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887 5555 566888899999999999999999999999999998888888777655444333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=2.1e-06 Score=88.07 Aligned_cols=91 Identities=11% Similarity=-0.079 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccC
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEMPYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQ 488 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 488 (643)
.+..+...+.+.|+.++|...+.+.- .++ ...+..+...++..|++++|+..|++++++.|++..+|..|+.+|...|
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~ 200 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG 200 (497)
T ss_dssp ---------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence 34444444555555555544333220 011 1233444444555555555555555555555555555555555555555
Q ss_pred ChhHHHHHHHHHH
Q 045672 489 KWDEVAEVRKTMR 501 (643)
Q Consensus 489 ~~~~a~~~~~~m~ 501 (643)
+..+|...+.+..
T Consensus 201 ~~~~A~~~y~ral 213 (497)
T d1ya0a1 201 DHLTTIFYYCRSI 213 (497)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.81 E-value=0.0076 Score=56.58 Aligned_cols=274 Identities=12% Similarity=0.083 Sum_probs=140.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhh
Q 045672 111 LVNILLNMHVKFSLLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLII 190 (643)
Q Consensus 111 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 190 (643)
-...+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.- +..+|..+..+|.+...
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e 84 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKE 84 (336)
T ss_dssp -------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcH
Confidence 334455555566666666666665543 5566666666666666666665431 34455555555544333
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 045672 191 LRQLHCGIIKVGFESDVFVRSALIDIYAKLGELRNAECVFNEMP---TRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRA 267 (643)
Q Consensus 191 ~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 267 (643)
..- ..+.......+......++..|-..|.+++...+++... ..+...++.++..|++.+ .++.++.++..
T Consensus 85 ~~l--a~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~--- 158 (336)
T d1b89a_ 85 FRL--AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF--- 158 (336)
T ss_dssp HHH--HHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH---
T ss_pred HHH--HHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc---
Confidence 321 111122233444555678888999999999999988643 345667888999888864 44444444332
Q ss_pred CCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 045672 268 GFAADQSTLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQKDVISWSTMISGL 347 (643)
Q Consensus 268 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 347 (643)
+-. .-...++..|...+-+ .-++-.|.+.|.+++|..+.-.- .+++......+..+
T Consensus 159 s~~---y~~~k~~~~c~~~~l~--------------------~elv~Ly~~~~~~~~A~~~~i~~-~~~~~~~~~f~e~~ 214 (336)
T d1b89a_ 159 WSR---VNIPKVLRAAEQAHLW--------------------AELVFLYDKYEEYDNAIITMMNH-PTDAWKEGQFKDII 214 (336)
T ss_dssp STT---SCHHHHHHHHHTTTCH--------------------HHHHHHHHHTTCHHHHHHHHHHS-TTTTCCHHHHHHHH
T ss_pred ccc---CCHHHHHHHHHHcCCh--------------------HHHHHHHHhcCCHHHHHHHHHHc-chhhhhHHHHHHHH
Confidence 112 2223345566555544 34566677888888776554221 11222334455666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH-------------HHHHhHHhcCCCCChHHHHHH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWN-------------HFKSMKKFYGIDPGREHYSCM 414 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~-------------~~~~~~~~~~~~p~~~~~~~l 414 (643)
.+.++.+...++.....+. .|+. .+.++......-+..+..+ +++..... + +....+++
T Consensus 215 ~k~~N~e~~~~~i~~yL~~--~p~~--i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~-n---~~~vn~al 286 (336)
T d1b89a_ 215 TKVANVELYYRAIQFYLEF--KPLL--LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH-N---NKSVNESL 286 (336)
T ss_dssp HHCSSTHHHHHHHHHHHHH--CGGG--HHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT-C---CHHHHHHH
T ss_pred HccCChHHHHHHHHHHHHc--CHHH--HHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc-C---hHHHHHHH
Confidence 6666666555555544432 3432 2344444444444444433 33332221 1 23455666
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 045672 415 IDLLGRAGKLQEAVKLIHE 433 (643)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~ 433 (643)
.+.|...++++.-.+.++.
T Consensus 287 ~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 287 NNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCcchhHHHHHHHHH
Confidence 6666666665544444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.78 E-value=0.00011 Score=62.53 Aligned_cols=64 Identities=9% Similarity=0.034 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 440 AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 440 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
...|..+..++.+.|++++|+..+.++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4467777888999999999999999999999999999999999999999999999999999874
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.75 E-value=0.00031 Score=59.56 Aligned_cols=62 Identities=11% Similarity=0.025 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
+|..+..++...|++++|+..++++++++|++..+|..++.+|...|++++|.+.++++.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566677899999999999999999999999999999999999999999999999998864
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.75 E-value=0.00028 Score=58.81 Aligned_cols=127 Identities=8% Similarity=-0.110 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 045672 338 ISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDL 417 (643)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 417 (643)
..+......+.+.|++.+|+..|++.+..- |.. ....-......... ....+|..+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWDDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 456667778888999999999998887531 110 00000000000011 123467778889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 045672 418 LGRAGKLQEAVKLIHEM-PYEP-DAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYA 485 (643)
Q Consensus 418 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 485 (643)
|.+.|++++|++.+++. ...| +..+|..+..++...|++++|+..|+++++++|+++.+...+..+..
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999887 4445 67799999999999999999999999999999999887776655543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.72 E-value=0.00011 Score=63.07 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=82.6
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 045672 379 LFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDL 458 (643)
Q Consensus 379 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~ 458 (643)
.......|++++|.+.|.....-+.-.+-... ....-......-++. .....+..+...+...|++++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCchH
Confidence 34667788888888888888763211110000 000000111111111 123467788889999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHh-----CCCCcCC
Q 045672 459 AICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRA-----RGITKEP 509 (643)
Q Consensus 459 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~ 509 (643)
|+..++++++.+|.+...|..++.+|...|++++|.+.|+++.+ .|+.|.+
T Consensus 86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 99999999999999999999999999999999999999998753 4776543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.00022 Score=56.64 Aligned_cols=94 Identities=10% Similarity=-0.058 Sum_probs=57.9
Q ss_pred HHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCH---HHHHHHHhhcCCCC-----hhhHHHHHHHHH
Q 045672 278 SVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSL---EDAMSVFSRMIQKD-----VISWSTMISGLA 348 (643)
Q Consensus 278 ~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~---~~A~~~~~~m~~~~-----~~~~~~li~~~~ 348 (643)
.+++.+...++++.|++.|..+.+ .+.+..++..+..++.+.++. ++|..+|+++...+ ..+|..+..+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 345555556666666666666666 444556666666666664443 35777777765422 125566677777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH
Q 045672 349 QNGYSQEALKLFESMKVSRIKPNYI 373 (643)
Q Consensus 349 ~~g~~~~A~~l~~~m~~~g~~p~~~ 373 (643)
+.|++++|++.|+++++ +.|+..
T Consensus 84 ~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHhhhHHHHHHHHHHHH--hCcCCH
Confidence 77777777777777776 356544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.68 E-value=0.00014 Score=56.89 Aligned_cols=87 Identities=7% Similarity=-0.090 Sum_probs=52.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 045672 343 MISGLAQNGYSQEALKLFESMKVSRIKP-NYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRA 421 (643)
Q Consensus 343 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 421 (643)
+...+.+.|++++|+..|++.+.. .| +...|..+..++.+.|++++|...|+...+. .+.+...+..+...|...
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHC
Confidence 445556666666666666666653 34 3555666666666666666666666666552 223455566666666666
Q ss_pred CCHHHHHHHHHh
Q 045672 422 GKLQEAVKLIHE 433 (643)
Q Consensus 422 g~~~~A~~~~~~ 433 (643)
|++++|.+.+++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 666666666554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.56 E-value=0.0085 Score=54.44 Aligned_cols=222 Identities=11% Similarity=-0.029 Sum_probs=109.9
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 045672 139 NVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGFESDVFVRSALIDIYA 218 (643)
Q Consensus 139 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~ 218 (643)
|+..+..|...+.+.+++++|++.|++..+.| |...+ ..|..+|.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~--------------------------------~~Lg~~y~ 45 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGC--------------------------------FNLGVLYY 45 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHH--------------------------------HHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHH--------------------------------HHHHHHHH
Confidence 34556667777777888888888888877654 11111 11233333
Q ss_pred H----cCCHHHHHHHHhhCCCC-CcchHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--cCC
Q 045672 219 K----LGELRNAECVFNEMPTR-DLVVWNSIIGGFAQ----NSDVDEALNLYKRMKRAGFAADQSTLTSVLRACT--GLA 287 (643)
Q Consensus 219 ~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~~ 287 (643)
. ..+...|...+.....+ +...+..+...+.. ..+.+.|...++...+.|....... ........ ...
T Consensus 46 ~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~-l~~~~~~~~~~~~ 124 (265)
T d1ouva_ 46 QGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCAS-LGGIYHDGKVVTR 124 (265)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHCSSSCC
T ss_pred cCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHh-hcccccCCCcccc
Confidence 2 33455555555544332 33344444444432 4566777777777766653221111 11111111 122
Q ss_pred hhHhHHHHHHHHhhcCCchhHHhHHHHHHHh----cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHh----cCCHHHHHH
Q 045672 288 LLELGTQVHVHVLKYDHDLILNNALLDMYCK----CGSLEDAMSVFSRMIQ-KDVISWSTMISGLAQ----NGYSQEALK 358 (643)
Q Consensus 288 ~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~ 358 (643)
....+...+..... ..+...+..|...|.. ..+...+...++...+ .+..+...+...|.. ..+.++|+.
T Consensus 125 ~~~~a~~~~~~~~~-~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~ 203 (265)
T d1ouva_ 125 DFKKAVEYFTKACD-LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALA 203 (265)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHH
T ss_pred hhHHHHHHhhhhhc-ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhh
Confidence 33333333333322 2233344455555553 3455555555555433 245555555544444 346667777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHH
Q 045672 359 LFESMKVSRIKPNYITIVGVLFACSH----AGFVEDGWNHFKSMKK 400 (643)
Q Consensus 359 l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~ 400 (643)
.|++..+.| +...+..|...|.+ ..+.++|.++|+....
T Consensus 204 ~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~ 246 (265)
T d1ouva_ 204 RYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 246 (265)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred hHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 777666655 23333334433332 2356666666666654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.44 E-value=0.0003 Score=58.82 Aligned_cols=88 Identities=18% Similarity=0.003 Sum_probs=64.2
Q ss_pred HHHHHhcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------
Q 045672 415 IDLLGRAGKLQEAVKLIHEM----PYEPD----------AVTWRALLGACKVHRNTDLAICAAKKILNLDPQ-------- 472 (643)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m----~~~p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-------- 472 (643)
...+.+.|++++|++.|++. +..|+ ...|+.+..++...|++++|...+++++++.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 34455667777777666655 21122 356777888889999999999999888865432
Q ss_pred ---CcchHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 473 ---DPGTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 473 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
...++..++.+|...|++++|.+.|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 123678899999999999999999999875
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.42 E-value=0.00019 Score=59.25 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=71.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc----------CCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 045672 347 LAQNGYSQEALKLFESMKVSRIKPN-YITIVGVLFACSHA----------GFVEDGWNHFKSMKKFYGIDPGREHYSCMI 415 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 415 (643)
|-+.+.+++|+..|+...+. .|+ ...+..+..++... +.+++|+..|++..+- -+.+...|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHH
Confidence 44556677777777777764 344 45555555555433 2334555555555541 122344444444
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHH
Q 045672 416 DLLGRAGKLQEAVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAE 495 (643)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 495 (643)
.+|...|++. ++... ..++++.|...|+++++++|++...+..|... ..|.+
T Consensus 83 ~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~ 134 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQ 134 (145)
T ss_dssp HHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHH
T ss_pred HHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHH
Confidence 4444333210 11111 11246889999999999999987666666554 45666
Q ss_pred HHHHHHhCCC
Q 045672 496 VRKTMRARGI 505 (643)
Q Consensus 496 ~~~~m~~~g~ 505 (643)
++.+..++|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 6666666664
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.0014 Score=52.42 Aligned_cols=59 Identities=12% Similarity=0.000 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 045672 341 STMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK 400 (643)
Q Consensus 341 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 400 (643)
..+...|.+.|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|.+.++.+.+
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 344555666666666666666666542 22355555566666666666666666666554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=0.00054 Score=51.55 Aligned_cols=73 Identities=16% Similarity=0.059 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 045672 411 YSCMIDLLGRAGKLQEAVKLIHEM----P----YEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLS 481 (643)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 481 (643)
+--+...+.+.|++++|...|++. + ..++ ..++..+..++.+.|++++|+..++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 334566667777777777766654 1 1223 457888899999999999999999999999999988887765
Q ss_pred HH
Q 045672 482 NI 483 (643)
Q Consensus 482 ~~ 483 (643)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=7.2e-05 Score=76.24 Aligned_cols=106 Identities=9% Similarity=-0.055 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 045672 339 SWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLL 418 (643)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 418 (643)
.|..+...+.+.|+.++|...+++.... .| ..++..+...+...|++++|...|.+..+. .+.+...|+.|...|
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILA 196 (497)
T ss_dssp ---------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 3444444445555555555444443321 01 233444444445555555555555555442 122334455555555
Q ss_pred HhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 045672 419 GRAGKLQEAVKLIHEM-P-YEPDAVTWRALLGA 449 (643)
Q Consensus 419 ~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~ 449 (643)
...|+..+|...|.+. . ..|-..++..|...
T Consensus 197 ~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 5555555555544443 1 12334444444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.14 E-value=0.0002 Score=59.01 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCC-----------hhHHHHHHHHHHhC
Q 045672 454 RNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQK-----------WDEVAEVRKTMRAR 503 (643)
Q Consensus 454 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~m~~~ 503 (643)
+.+++|+..++++++++|+++.+|..++.+|...|+ +++|.+.|++..+.
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 456889999999999999999999999999987764 57888888877753
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.12 E-value=0.0008 Score=61.44 Aligned_cols=125 Identities=14% Similarity=-0.011 Sum_probs=77.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHH
Q 045672 348 AQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPG-REHYSCMIDLLGRAGKLQE 426 (643)
Q Consensus 348 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 426 (643)
.+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence 45678888888888877752 334567777777888888888888888877763 443 3344444444444444444
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 045672 427 AVKLIHEM--PYEPD-AVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 427 A~~~~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 476 (643)
+..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 33322221 11232 2233334455777888888888888888888876644
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.08 E-value=0.0045 Score=52.57 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=52.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChHH
Q 045672 337 VISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKK----FYGIDPGREH 410 (643)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 410 (643)
...+..+...+...|++++|+..++++.... +-+...+..++.++...|+..+|++.|+.+.+ ..|+.|+..+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 3456667777778888888888888877642 33567777888888888888888877777643 3577877654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.89 E-value=0.17 Score=46.95 Aligned_cols=269 Identities=11% Similarity=0.003 Sum_probs=137.5
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 045672 44 DDFTRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLNMHVKFS 123 (643)
Q Consensus 44 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 123 (643)
.+...|.+.|.++.|..+|..+. -|..++..+.+.++++.|.++.... .+..+|..+...+.+..
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 83 (336)
T ss_dssp ----------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCc
Confidence 34555667888888888887554 2666777777888888777665433 24557777777777666
Q ss_pred ChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhchhhHHHHHHHHHHhCC
Q 045672 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREGVRPNMFTYSAVLRACDSLIILRQLHCGIIKVGF 203 (643)
Q Consensus 124 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g~ 203 (643)
...-|.-. ......+......++..|-..|.+++.+.+++..... -.++...++-++..+++.+. +++.+.+...+.
T Consensus 84 e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~ 160 (336)
T d1b89a_ 84 EFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREHLELFWS 160 (336)
T ss_dssp CHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHST
T ss_pred HHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHHHhccc
Confidence 55444221 1112234444566778888888888888888776532 24455566777777766543 344444444322
Q ss_pred CCch----------hHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 045672 204 ESDV----------FVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQ 273 (643)
Q Consensus 204 ~~~~----------~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 273 (643)
.-|. ..|..++-.|.+.|++++|..+.-.-+ ++..-....+..+.+.++++...+......+. .|+
T Consensus 161 ~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~- 236 (336)
T d1b89a_ 161 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL- 236 (336)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG-
T ss_pred cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHH-
Confidence 1111 113345555555566555554432211 12222334455556666655555544444332 222
Q ss_pred HHHHHHHHHHhcCChhHhHHHHHHHHhhcCCchhHHhHHHHHHHhcCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCC
Q 045672 274 STLTSVLRACTGLALLELGTQVHVHVLKYDHDLILNNALLDMYCKCGSLEDAMSVFSRMIQK-DVISWSTMISGLAQNGY 352 (643)
Q Consensus 274 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~ 352 (643)
..+.++......-+. ..+++..-+.+++.-....++..... +....+++...|...++
T Consensus 237 -~i~~lL~~v~~~~d~--------------------~r~V~~~~k~~~l~li~p~Le~v~~~n~~~vn~al~~lyie~~d 295 (336)
T d1b89a_ 237 -LLNDLLMVLSPRLDH--------------------TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEED 295 (336)
T ss_dssp -GHHHHHHHHGGGCCH--------------------HHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHhccCCCH--------------------HHHHHHHHhcCCcHHHHHHHHHHHHcChHHHHHHHHHHHhCcch
Confidence 223333332222222 22344444555555555555544332 34456667777777776
Q ss_pred HHH
Q 045672 353 SQE 355 (643)
Q Consensus 353 ~~~ 355 (643)
++.
T Consensus 296 ~~~ 298 (336)
T d1b89a_ 296 YQA 298 (336)
T ss_dssp HHH
T ss_pred hHH
Confidence 543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.85 E-value=0.005 Score=50.93 Aligned_cols=64 Identities=13% Similarity=0.030 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 045672 410 HYSCMIDLLGRAGKLQEAVKLIHEM--------PYEPD-----AVTWRALLGACKVHRNTDLAICAAKKILNLDPQD 473 (643)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 473 (643)
.|+.+..+|...|++++|.+.+++. ...++ ...+..+..++...|++++|+..|++++++.|..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 3444555555555555555444432 11122 1245667788999999999999999999876543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.0047 Score=46.06 Aligned_cols=62 Identities=10% Similarity=-0.104 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHccCChhHHHHHHHHHHhC
Q 045672 442 TWRALLGACKVHRNTDLAICAAKKILNLDPQD-------PGTYILLSNIYANSQKWDEVAEVRKTMRAR 503 (643)
Q Consensus 442 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 503 (643)
.+-.+...+.+.|+++.|+..+++++++.|.+ ..++..|+.+|.+.|++++|.+.++++.+.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34456777899999999999999999875443 357889999999999999999999999874
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.63 E-value=0.00059 Score=62.39 Aligned_cols=121 Identities=14% Similarity=0.093 Sum_probs=85.4
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 045672 382 CSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLIHEM-PYEPD-AVTWRALLGACKVHRNTDLA 459 (643)
Q Consensus 382 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 459 (643)
..+.|++++|+..+++..+ .-+.+...+..+...|++.|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 3467999999999999998 34557899999999999999999999999887 44565 34555554444433333332
Q ss_pred HHHHHHHHh-cCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 045672 460 ICAAKKILN-LDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARG 504 (643)
Q Consensus 460 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 504 (643)
......... .+|++...+...+..+...|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 222111111 224444556667888999999999999999987643
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.13 E-value=0.18 Score=38.28 Aligned_cols=141 Identities=10% Similarity=0.070 Sum_probs=97.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 045672 347 LAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQE 426 (643)
Q Consensus 347 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 426 (643)
+.-.|..++..++..+...+ .+..-++.++.-....-+-+-..+.++.+-+-+.+.| ++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 44567778888888877653 3455566666555555666666667776655444333 344444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 045672 427 AVKLIHEMPYEPDAVTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTMRARGIT 506 (643)
Q Consensus 427 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 506 (643)
...-+-.+. .+.......++...+.|.-+.-.++++.+++-+..+|.....++++|.+.|...++.+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 444443332 234445556677888899999999999988877667889999999999999999999999999999975
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.61 E-value=1.1 Score=33.96 Aligned_cols=139 Identities=12% Similarity=0.033 Sum_probs=86.8
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCChhHhHHHHHHHHhh-cCCchhHHhHHHHHHHhcCCHHHHHH
Q 045672 249 AQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRACTGLALLELGTQVHVHVLK-YDHDLILNNALLDMYCKCGSLEDAMS 327 (643)
Q Consensus 249 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~Li~~y~~~g~~~~A~~ 327 (643)
.-.|..++..+++.+..... +..-++-++.-....-+-+...+.++.+-+ +.. .+|+++.....
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl------------s~C~Nlk~vv~ 77 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL------------DKCQNLKSVVE 77 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG------------GGCSCTHHHHH
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCc------------hhhhcHHHHHH
Confidence 44566777777776665532 233333333333333333333333333333 221 24566665555
Q ss_pred HHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 045672 328 VFSRMIQKDVISWSTMISGLAQNGYSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGID 405 (643)
Q Consensus 328 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 405 (643)
.+-.+.. +....+..++.+.++|+-++-.++++.+.+.+ +|++.....+..||.+.|+..++-+++.++.+. |++
T Consensus 78 C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~K 152 (161)
T d1wy6a1 78 CGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 152 (161)
T ss_dssp HHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hHH
Confidence 5544432 33445666788889999999999999977754 788888889999999999999999999998874 653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.32 E-value=3.7 Score=39.38 Aligned_cols=408 Identities=12% Similarity=0.032 Sum_probs=216.0
Q ss_pred HHHHhCCCcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHc--cCCHHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHcCC
Q 045672 47 TRFCYQRDLPRAMKAMHAMQCHGVRADSVTYAELIKCCLA--RHAVEEAKLVHNHVLSGGFEP-ETFLVNILLNMHVKFS 123 (643)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g 123 (643)
....++|++.++..+...+... | -..|...-..-.. .....+. -..+.+..-.| .......-+..+.+.+
T Consensus 14 ~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i---~~Fl~~~p~~P~~~~lr~~~l~~L~~~~ 86 (450)
T d1qsaa1 14 KQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTV---TNFVRANPTLPPARTLQSRFVNELARRE 86 (450)
T ss_dssp HHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHH---HHHHHHCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHH---HHHHHHCCCChhHHHHHHHHHHHHHhcc
Confidence 3456778899888887777432 2 2233333222222 2334433 33333321111 1122334456778889
Q ss_pred ChhHHHHHHccCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHhchhhHHHHHHHHHHhC
Q 045672 124 LLEEAQVLFDQMPERNVVSWTTMISAYCDAKMNDKALELLIFMLREG-VRPNMFTYSAVLRACDSLIILRQLHCGIIKVG 202 (643)
Q Consensus 124 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~g 202 (643)
++......+..-+ .+...--....+....|+.++|.+.+..+-..| ..|+ ....++ ....+.|
T Consensus 87 ~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~--~c~~l~-------------~~~~~~~ 150 (450)
T d1qsaa1 87 DWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACDKLF-------------SVWRASG 150 (450)
T ss_dssp CHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHHHHH-------------HHHHHTT
T ss_pred CHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch--HHHHHH-------------HHHHhcC
Confidence 9988887775433 244444466778888999999999888887665 2333 233332 2233333
Q ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045672 203 FESDVFVRSALIDIYAKLGELRNAECVFNEMPTRDLVVWNSIIGGFAQNSDVDEALNLYKRMKRAGFAADQSTLTSVLRA 282 (643)
Q Consensus 203 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 282 (643)
. .+...+-.-+......|+...|..+...++..........+..... ...+..... . ..++......+..+
T Consensus 151 ~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~---~--~~~~~~~~~~~~~~ 221 (450)
T d1qsaa1 151 K-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR---T--TGATDFTRQMAAVA 221 (450)
T ss_dssp C-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH---H--SCCCHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHh---c--CCCChhhhHHHHHH
Confidence 2 3333333455566677899999999888776544444555544432 222222211 1 12233333333333
Q ss_pred HhcC--ChhHhHHHHHHHHhh-cCCchhHH----hHHHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCCH
Q 045672 283 CTGL--ALLELGTQVHVHVLK-YDHDLILN----NALLDMYCKCGSLEDAMSVFSRMI--QKDVISWSTMISGLAQNGYS 353 (643)
Q Consensus 283 ~~~~--~~~~~a~~i~~~~~~-~~~~~~~~----~~Li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~ 353 (643)
..+. .+.+.+...+..... ...+..-. ..+.......+..+.+...+.... ..+.....-.+......++.
T Consensus 222 l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~ 301 (450)
T d1qsaa1 222 FASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDR 301 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCCh
Confidence 3322 345556666655554 22221111 222233334555666666655442 22332222234445567888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH-H
Q 045672 354 QEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEAVKLI-H 432 (643)
Q Consensus 354 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~ 432 (643)
..+...++.|... ..-...-.--+..+....|+.++|..+|..+.. .++ -|.-|... +.|..- .+- .
T Consensus 302 ~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~Lg~~~---~~~~~ 369 (450)
T d1qsaa1 302 RGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--RIGEEY---ELKID 369 (450)
T ss_dssp HHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--HTTCCC---CCCCC
T ss_pred HHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--HcCCCC---CCCcC
Confidence 8888888877532 122234445677788888999999888888764 233 23333211 122100 000 0
Q ss_pred hCCCCCC-HHHHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHccCChhHHHHHHHHH
Q 045672 433 EMPYEPD-AVTWR---ALLGACKVHRNTDLAICAAKKILNLDPQDPGTYILLSNIYANSQKWDEVAEVRKTM 500 (643)
Q Consensus 433 ~m~~~p~-~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 500 (643)
..+..++ ...-+ .-+..+...|....|...+..+.+.. ++.-...++....+.|.++.|.....+.
T Consensus 370 ~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 0011111 11111 12344678899999999888877543 3456778888889999999988776554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.95 E-value=0.59 Score=36.42 Aligned_cols=50 Identities=12% Similarity=0.047 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHc----cCChhHHHHHHHHHHhCCC
Q 045672 454 RNTDLAICAAKKILNLDPQDPGTYILLSNIYAN----SQKWDEVAEVRKTMRARGI 505 (643)
Q Consensus 454 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 505 (643)
.+.++|.+.+++..+.+ ++.+...|+.+|.. ..+.++|.+++++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 46677888888776654 34567777777766 4578888888888877764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.68 E-value=1 Score=34.85 Aligned_cols=111 Identities=9% Similarity=-0.046 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHH
Q 045672 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGR----AGKLQEA 427 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 427 (643)
++++|++.|++..+.|. |.. ...+ +.....+.++|.+++++..+. | ++..+..|..+|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~-~~a--~~~l--~~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-MFG--CLSL--VSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-TTH--HHHH--HTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCC-hhh--hhhh--ccccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 56677777777766652 221 2222 223445677777777776662 3 34445555555543 3457778
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 045672 428 VKLIHEMPYEPDAVTWRALLGACKV----HRNTDLAICAAKKILNLDP 471 (643)
Q Consensus 428 ~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 471 (643)
.++|++.-..-+......|...|.. ..|.++|...++++.+.+.
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 8888776222344444445444443 4578888888888877654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.03 E-value=0.24 Score=37.87 Aligned_cols=48 Identities=8% Similarity=0.003 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHhcCCCCc-chHHHHHHHHHccCChhHHHHHHHHHHh
Q 045672 455 NTDLAICAAKKILNLDPQDP-GTYILLSNIYANSQKWDEVAEVRKTMRA 502 (643)
Q Consensus 455 ~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 502 (643)
+.++|+.++++++..+|.+. ..+..|+-+|.+.|++++|++.++.+.+
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34566666666666666543 4556666667777777777777766665
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.96 E-value=2.1 Score=32.39 Aligned_cols=70 Identities=9% Similarity=-0.023 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 045672 407 GREHYSCMIDLLGRAGK---LQEAVKLIHEM-PYEP-DA-VTWRALLGACKVHRNTDLAICAAKKILNLDPQDPGT 476 (643)
Q Consensus 407 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 476 (643)
+..+--.+.-++.++.. .++|+.++++. ...| +. ..|-.|.-+|.+.|+++.|++.++++++.+|++..+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 33343344444444433 34556665554 1123 22 355556667888999999999999999999988644
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.72 E-value=2.1 Score=30.52 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 045672 352 YSQEALKLFESMKVSRIKPNYITIVGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMID 416 (643)
Q Consensus 352 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 416 (643)
+.-++.+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.+ ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4556777778888888999999999999999999999999999999887533 44556766654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.67 E-value=2.6 Score=30.05 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=50.0
Q ss_pred CcchHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045672 54 DLPRAMKAMHAMQCHGVRADSVTYAELIKCCLARHAVEEAKLVHNHVLSGGFEPETFLVNILLN 117 (643)
Q Consensus 54 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 117 (643)
+..++.+-++.+...+.-|++....+.|++|.+.+++..|.++++.+.... .++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 555777888888888889999999999999999999999999999887653 234556665554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=84.27 E-value=18 Score=34.24 Aligned_cols=115 Identities=8% Similarity=0.020 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCHHHH--HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 045672 351 GYSQEALKLFESMKVSR-IKPNYITI--VGVLFACSHAGFVEDGWNHFKSMKKFYGIDPGREHYSCMIDLLGRAGKLQEA 427 (643)
Q Consensus 351 g~~~~A~~l~~~m~~~g-~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 427 (643)
.+.+.|..++....... ..++.... ..+.......+..+.+...+...... ..+.....-.+....+.+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHHH
Confidence 45666666666654432 22221111 11122223345556666655554432 23333333444445566677777
Q ss_pred HHHHHhCCCCCCH-HHH-HHHHHHHHHcCCHHHHHHHHHHHHh
Q 045672 428 VKLIHEMPYEPDA-VTW-RALLGACKVHRNTDLAICAAKKILN 468 (643)
Q Consensus 428 ~~~~~~m~~~p~~-~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 468 (643)
...+..|+..|.. .-| -=+..+....|+.+.|...+..+..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 7777776433211 111 1233556667777777777776653
|