Citrus Sinensis ID: 045739

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPGLPVVQPCPVE
cEEEEEcccccccccccccccccccccccccEEEEcccccEEEEEccccccEEEEccccEEEEEcccccccccccccccccEEEEcccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccEEccEEEcccccccEEEEEcccccEEEEcccccEEEEEcccccccccccccccEEEEcc
cEEEEcccccccccccccccccccccccccccEHHHccccEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccc
elytwgrdegegrlglgpgrgpneagglsipskvkalpvpvaavscgGFFTMVLTEEgqlwnwgansnyelgrgdrvggwkpkllpnlvDVRIIQIAnggyhslaltddgkvfswgygghgqlghsftqnqkVPMVIEALADEFVTHiacggstsaavtekgklymwgnakdsqlgvpglpvvqpcpve
elytwgrdegegrlglgpgrgpnEAGGLSIPSKVKALPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAkdsqlgvpglpvvqpcpve
ELYTWGRDegegrlglgpgrgpNEAGGLSIpskvkalpvpvaavsCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPGLPVVQPCPVE
********************************KVKALPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPGL*********
ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPGLPV*QPCPVE
ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPGLPVVQPCPVE
ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKD*QL**************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPGLPVVQPCPVE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query189 2.2.26 [Sep-21-2011]
Q4U2R1 4836 E3 ubiquitin-protein liga yes no 0.962 0.037 0.365 4e-23
O95714 4834 E3 ubiquitin-protein liga yes no 0.957 0.037 0.361 6e-23
Q9UII4 1024 E3 ISG15--protein ligase no no 0.968 0.178 0.375 8e-23
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.899 0.160 0.376 2e-21
Q99LJ7 551 RCC1 and BTB domain-conta no no 0.957 0.328 0.366 4e-21
Q5GLZ8 1057 Probable E3 ubiquitin-pro no no 0.899 0.160 0.370 5e-21
Q6P798 551 RCC1 and BTB domain-conta no no 0.957 0.328 0.366 5e-21
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.899 0.160 0.365 9e-21
F2Z461 1003 E3 ISG15--protein ligase no no 0.910 0.171 0.331 1e-20
Q8IVU3 1022 Probable E3 ubiquitin-pro no no 0.915 0.169 0.351 1e-20
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function desciption
 Score =  107 bits (268), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 103/189 (54%), Gaps = 7/189 (3%)

Query: 1   ELYTWGRDEGEGRLG-LGPGRGPNEAGGLSIPSKVKALPVPVAAVSCGGFFTMVLTEEGQ 59
           ELYTWGR    G  G LG G   +EA  + + + +K L V   A   G   T+ +TE GQ
Sbjct: 572 ELYTWGR----GNYGRLGHGSSEDEAIPMLV-AGLKGLKVIDVACGSGDAQTLAVTENGQ 626

Query: 60  LWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGG 119
           +W+WG     +LGRG   G   PKL+  L D+ +I++  G   S+ALT DG+V+SWG G 
Sbjct: 627 VWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQFSIALTKDGQVYSWGKGD 686

Query: 120 HGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPG 179
           + +LGH   ++ + P ++E L  + V  +A G +   A+TE  +++ WG+    Q     
Sbjct: 687 NQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQ-HFDT 745

Query: 180 LPVVQPCPV 188
           L V +P P 
Sbjct: 746 LRVTKPEPT 754
E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q9UII4|HERC5_HUMAN E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q99LJ7|RCBT2_MOUSE RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q6P798|RCBT2_RAT RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 Back     alignment and function description
>sp|Q8IVU3|HERC6_HUMAN Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
225464728 489 PREDICTED: probable E3 ubiquitin-protein 0.978 0.378 0.841 1e-88
296087557 329 unnamed protein product [Vitis vinifera] 0.994 0.571 0.841 1e-88
255539128 450 guanine nucleotide exchange factor P532, 0.968 0.406 0.825 7e-80
224118018 320 predicted protein [Populus trichocarpa] 0.989 0.584 0.804 3e-78
449518441 463 PREDICTED: E3 ubiquitin-protein ligase H 0.968 0.395 0.767 2e-71
449456530 463 PREDICTED: E3 ubiquitin-protein ligase H 0.968 0.395 0.761 1e-70
297797029 445 regulator of chromosome condensation fam 0.931 0.395 0.751 1e-69
145334859276 regulator of chromosome condensation rep 0.957 0.655 0.751 1e-68
42568678 445 regulator of chromosome condensation rep 0.994 0.422 0.751 1e-68
356524449 444 PREDICTED: probable E3 ubiquitin-protein 0.952 0.405 0.772 1e-68
>gi|225464728|ref|XP_002264236.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 159/189 (84%), Positives = 173/189 (91%)

Query: 1   ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALPVPVAAVSCGGFFTMVLTEEGQL 60
           ELYTWGRD+G+GRLGLGP  GPNE GGLSIPSKVKALPVPVAAVSCGGFFTMVLT+EGQL
Sbjct: 212 ELYTWGRDQGDGRLGLGPNCGPNEGGGLSIPSKVKALPVPVAAVSCGGFFTMVLTQEGQL 271

Query: 61  WNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGH 120
           WNWGANSNYELGRGD+VGGWKP+ +P+L DVRIIQIA+GGYHSLALTDDGKV SWGYG H
Sbjct: 272 WNWGANSNYELGRGDKVGGWKPQPIPSLQDVRIIQIASGGYHSLALTDDGKVLSWGYGQH 331

Query: 121 GQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPGL 180
           GQLGHS  +NQK+P VIEALADE V +IACGGS+SAA+T+ GKLYMWGNAKDSQLGVPGL
Sbjct: 332 GQLGHSSIENQKIPTVIEALADEHVIYIACGGSSSAAITDNGKLYMWGNAKDSQLGVPGL 391

Query: 181 PVVQPCPVE 189
           P  QP PVE
Sbjct: 392 PETQPLPVE 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296087557|emb|CBI34146.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539128|ref|XP_002510629.1| guanine nucleotide exchange factor P532, putative [Ricinus communis] gi|223551330|gb|EEF52816.1| guanine nucleotide exchange factor P532, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224118018|ref|XP_002331537.1| predicted protein [Populus trichocarpa] gi|222873761|gb|EEF10892.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449518441|ref|XP_004166250.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449456530|ref|XP_004146002.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297797029|ref|XP_002866399.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] gi|297312234|gb|EFH42658.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|145334859|ref|NP_001078775.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|62320260|dbj|BAD94537.1| UVB-resistance protein UVR8 - like [Arabidopsis thaliana] gi|332010007|gb|AED97390.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42568678|ref|NP_200895.2| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|10176914|dbj|BAB10107.1| unnamed protein product [Arabidopsis thaliana] gi|332010005|gb|AED97388.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356524449|ref|XP_003530841.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
TAIR|locus:2159295445 RUG3 "RCC1/UVR8/GEF-like 3" [A 1.0 0.424 0.613 3.9e-60
TAIR|locus:2146142396 AT5G16040 "AT5G16040" [Arabido 0.740 0.353 0.380 1.2e-22
MGI|MGI:1917200 551 Rcbtb2 "regulator of chromosom 0.714 0.245 0.405 1.3e-22
ZFIN|ZDB-GENE-030131-7951 531 rcbtb1 "regulator of chromosom 0.687 0.244 0.409 1.5e-22
TAIR|locus:2076889393 AT3G02510 "AT3G02510" [Arabido 0.751 0.361 0.372 3.3e-22
UNIPROTKB|O95199 551 RCBTB2 "RCC1 and BTB domain-co 0.714 0.245 0.405 5.8e-22
UNIPROTKB|E1BVG2 531 RCBTB1 "Uncharacterized protei 0.687 0.244 0.386 1.4e-20
UNIPROTKB|F1N1N9 959 HERC5 "Uncharacterized protein 0.693 0.136 0.393 2.1e-20
UNIPROTKB|Q9UII4 1024 HERC5 "E3 ISG15--protein ligas 0.756 0.139 0.393 2.3e-20
MGI|MGI:1918580 531 Rcbtb1 "regulator of chromosom 0.687 0.244 0.386 3.7e-20
TAIR|locus:2159295 RUG3 "RCC1/UVR8/GEF-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 116/189 (61%), Positives = 135/189 (71%)

Query:     1 ELYTWGRDXXXXXXXXXXXXXXNEAGGLSIXXXXXXXXXXXXXXXCGGFFTMVLTEEGQL 60
             ELY WGR+              NE GGLS+               CGGFFTM LT+EGQL
Sbjct:   224 ELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVKALTVPVASVSCGGFFTMALTKEGQL 283

Query:    61 WNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGH 120
             WNWGANSNYELGRGD +GGW+P  +P+L  VRI QIA GGYHSLALT++GKV SWG+GGH
Sbjct:   284 WNWGANSNYELGRGDNLGGWEPMPVPSLEGVRITQIACGGYHSLALTEEGKVLSWGHGGH 343

Query:   121 GQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPGL 180
             GQLG S  +NQKVP  IEALAD+ +  IA GGS+SAA+T+ G+L+MWGNAKD QLGVPGL
Sbjct:   344 GQLGSSSLRNQKVPTEIEALADKKIVFIASGGSSSAAITDGGELWMWGNAKDFQLGVPGL 403

Query:   181 PVVQPCPVE 189
             P +Q  PVE
Sbjct:   404 PEIQTTPVE 412
GO:0005737 "cytoplasm" evidence=ISM
GO:0008536 "Ran GTPase binding" evidence=ISS
GO:0005739 "mitochondrion" evidence=IDA
GO:0008380 "RNA splicing" evidence=IMP
GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP
TAIR|locus:2146142 AT5G16040 "AT5G16040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1917200 Rcbtb2 "regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-7951 rcbtb1 "regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2076889 AT3G02510 "AT3G02510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O95199 RCBTB2 "RCC1 and BTB domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BVG2 RCBTB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N1N9 HERC5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UII4 HERC5 "E3 ISG15--protein ligase HERC5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1918580 Rcbtb1 "regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 6e-25
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-21
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-21
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-17
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-14
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-14
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 7e-11
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 9e-09
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 8e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-05
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 4e-04
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =   99 bits (249), Expect = 6e-25
 Identities = 59/198 (29%), Positives = 92/198 (46%), Gaps = 18/198 (9%)

Query: 2   LYTWG-RDEGE-GRLGLGPGRGPNEAGGL-------SIPSKV-----KALPVPVAAVSCG 47
           LY+WG  D+G  GR         N            S P KV         + V  ++CG
Sbjct: 125 LYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACG 184

Query: 48  GFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLV---DVRIIQIANGGYHSL 104
              +++LT +G++++WG     ELG+G      K  +    +      I+Q+A G  H +
Sbjct: 185 WEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAAGADHLI 244

Query: 105 ALTDDGKVFSWGYGGHGQLGH-SFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGK 163
           ALT++GKV+ WG    GQLG  +  + + V +V +  A   + ++ACG   S A+ E G+
Sbjct: 245 ALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGE 304

Query: 164 LYMWGNAKDSQLGVPGLP 181
           +Y WG     QLG     
Sbjct: 305 IYAWGVNIFGQLGAGSDG 322

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 189
KOG1427 443 consensus Uncharacterized conserved protein, conta 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 99.97
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 99.96
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.93
KOG1427 443 consensus Uncharacterized conserved protein, conta 99.93
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.86
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.77
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.64
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.43
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.4
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.39
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.32
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.24
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.51
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 96.99
KOG3669 705 consensus Uncharacterized conserved protein, conta 94.9
KOG3669 705 consensus Uncharacterized conserved protein, conta 93.53
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 92.24
smart0070635 TECPR Beta propeller repeats in Physarum polycepha 89.76
PF07569 219 Hira: TUP1-like enhancer of split; InterPro: IPR01 89.48
smart0070635 TECPR Beta propeller repeats in Physarum polycepha 86.72
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-33  Score=214.75  Aligned_cols=179  Identities=28%  Similarity=0.495  Sum_probs=153.5

Q ss_pred             CceEecCCCCCCcccCCCCCCCCCCCCcccCcccccCC-CCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCC
Q 045739            1 ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALP-VPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGG   79 (189)
Q Consensus         1 ~v~~wG~n~~~gqlG~~~~~~~~~~~~~~~p~~~~~~~-~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~   79 (189)
                      +.|+||+|. .||||.++...      ...|+.|..+. .+|++.+||+.|+++||++|.||.||.|++||||.+...+.
T Consensus        78 k~~~wGRNe-kGQLGhgD~k~------~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~  150 (443)
T KOG1427|consen   78 KCYTWGRNE-KGQLGHGDMKQ------RERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNE  150 (443)
T ss_pred             ceeecccCc-cCccCccchhh------ccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccc
Confidence            479999998 99999997664      56788887775 79999999999999999999999999999999999998876


Q ss_pred             cceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCCc--------------cccEEeccccCccE
Q 045739           80 WKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQ--------------KVPMVIEALADEFV  145 (189)
Q Consensus        80 ~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~--------------~~~~~~~~~~~~~i  145 (189)
                      ...++.+......|..|+||..+++.|+..+.|.++|...|||||++.....              ..|..+..+..+.|
T Consensus       151 v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqi  230 (443)
T KOG1427|consen  151 VESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQI  230 (443)
T ss_pred             cccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceee
Confidence            6666666667778999999999999999999999999999999998753321              22444556777899


Q ss_pred             EEEEeeCCeeEEEecCCCEEEecCCCCCcccCCCC-CCCccc
Q 045739          146 THIACGGSTSAAVTEKGKLYMWGNAKDSQLGVPGL-PVVQPC  186 (189)
Q Consensus       146 ~~v~~g~~~~~~lt~~g~vy~wG~n~~gqlg~~~~-~~~~~~  186 (189)
                      ++++||.+|++++.++++||.||..-+|.||+... +..+|.
T Consensus       231 v~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpR  272 (443)
T KOG1427|consen  231 VKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPR  272 (443)
T ss_pred             EEEeccCcceeeecCCccEEEeccccccccccccchhhHHHH
Confidence            99999999999999999999999999999999765 344443

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 7e-19
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 6e-17
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 7e-17
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 7e-17
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 9e-17
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 4e-13
1a12_A 413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 7e-12
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 8e-12
3of7_A 473 The Crystal Structure Of Prp20p From Saccharomyces 2e-07
1jtd_B 273 Crystal Structure Of Beta-Lactamase Inhibitor Prote 4e-07
3qhy_B 282 Structural, Thermodynamic And Kinetic Analysis Of T 4e-07
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure 
Iteration: 1

 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 81/135 (60%), Gaps = 2/135 (1%)
Query: 47  GGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLAL 106
           GG   + L+ EG++++WG   + +LG G+R    +P+++ +L  + ++ +A GG HS  +
Sbjct: 115 GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACV 174
Query: 107 TDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGG--STSAAVTEKGKL 164
           T  G +++WG G +G+LGHS +++Q  P ++EAL    V  IACG   + +  +T+   +
Sbjct: 175 TAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTV 234
Query: 165 YMWGNAKDSQLGVPG 179
           + WG+    +LG  G
Sbjct: 235 WSWGDGDYGKLGRGG 249
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii In Complex With Tem-1 Beta-Lactamase Length = 273 Back     alignment and structure
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The Picomolar Binding Affinity Interaction Of The Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With Class A Beta-Lactamases Length = 282 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-57
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-54
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-54
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-51
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 9e-47
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-45
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 7e-22
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-06
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-55
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 6e-53
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-52
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-48
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-42
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-29
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 9e-52
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-47
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 8e-46
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 2e-41
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-40
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 7e-24
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 8e-06
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 6e-05
3mvd_K423 Regulator of chromosome condensation; protein-DNA 6e-48
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 2e-45
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-41
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 3e-41
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 6e-41
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 3e-24
3of7_A 473 Regulator of chromosome condensation; beta-propell 4e-46
3of7_A473 Regulator of chromosome condensation; beta-propell 4e-45
3of7_A 473 Regulator of chromosome condensation; beta-propell 1e-42
3of7_A473 Regulator of chromosome condensation; beta-propell 6e-38
3of7_A 473 Regulator of chromosome condensation; beta-propell 2e-37
3of7_A 473 Regulator of chromosome condensation; beta-propell 1e-23
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-21
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-24
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-24
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 9e-24
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-18
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-17
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  185 bits (471), Expect = 1e-57
 Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 8/177 (4%)

Query: 1   ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALP-VPVAAVSCGGFFTMVLTEEGQ 59
           +LY WG     G LGLG      +     +P +V +     ++ V+CG   T+ ++  G 
Sbjct: 193 DLYGWGWGR-YGNLGLG------DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 245

Query: 60  LWNWGANSNYELGRGDRVGGWKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGG 119
           L+ +G +   +LG GD      P  L  L +  I QI+ G  H++ALT DGK++ WG+  
Sbjct: 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNK 305

Query: 120 HGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVTEKGKLYMWGNAKDSQLG 176
            GQ+G     +Q  P+ +    D+ V  ++CG   + AVTE+  ++ WG   + QLG
Sbjct: 306 FGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 362
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query189
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A 473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 97.09
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.62
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 90.69
2zwa_A 695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 88.67
2zwa_A 695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 85.53
1wp5_A 323 Topoisomerase IV; broken beta-propeller, hairpin-i 80.06
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=8.3e-42  Score=278.93  Aligned_cols=180  Identities=32%  Similarity=0.565  Sum_probs=162.2

Q ss_pred             CceEecCCCCCCcccCCCCCCCCCCCCcccCcccccCC-CCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCC
Q 045739            1 ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALP-VPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGG   79 (189)
Q Consensus         1 ~v~~wG~n~~~gqlG~~~~~~~~~~~~~~~p~~~~~~~-~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~   79 (189)
                      +||+||.|. +||||.++...      ...|+++..+. .+|++|+||..|+++|+++|+||+||.|.+||||.++....
T Consensus       193 ~v~~wG~n~-~GqlG~g~~~~------~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~  265 (406)
T 4d9s_A          193 DLYGWGWGR-YGNLGLGDRTD------RLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDH  265 (406)
T ss_dssp             CEEEEECCT-TSTTCSSSSCC------EEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCE
T ss_pred             CEEEeeCCC-CCCCCCCCCCC------cCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCc
Confidence            589999996 99999986543      34677776554 68999999999999999999999999999999999998888


Q ss_pred             cceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEeccccCccEEEEEeeCCeeEEEe
Q 045739           80 WKPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVPMVIEALADEFVTHIACGGSTSAAVT  159 (189)
Q Consensus        80 ~~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~~~~~~~~~~~~~~~i~~v~~g~~~~~~lt  159 (189)
                      ..|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.+.......|.++..+...+|++|+||.+|+++|+
T Consensus       266 ~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt  345 (406)
T 4d9s_A          266 LIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVT  345 (406)
T ss_dssp             EEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEE
T ss_pred             cccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEe
Confidence            89999999888999999999999999999999999999999999999888888899998877789999999999999999


Q ss_pred             cCCCEEEecCCCCCcccCCCCC-CCcccc
Q 045739          160 EKGKLYMWGNAKDSQLGVPGLP-VVQPCP  187 (189)
Q Consensus       160 ~~g~vy~wG~n~~gqlg~~~~~-~~~~~p  187 (189)
                      ++|+||+||.|.+||||+++.. ...|++
T Consensus       346 ~~G~v~~wG~n~~GqLG~g~~~~~~~P~~  374 (406)
T 4d9s_A          346 ERNNVFAWGRGTNGQLGIGESVDRNFPKI  374 (406)
T ss_dssp             TTSCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred             CCCCEEEecCCCCCccCCCCCCCCcCCEE
Confidence            9999999999999999998753 334443
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 189
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-20
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-18
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-18
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-17
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 6e-14
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 8e-04
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 4e-08
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-06
d1jtdb_ 273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-06
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.2 bits (209), Expect = 2e-20
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 39  VPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGWK-PKLLPNLVDVRIIQIA 97
                 S G   T+ +  EG+ ++ G      LG G+       P L+  L  V    +A
Sbjct: 274 KSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAV--SSVA 331

Query: 98  NGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQNQKVP--MVIEALADEFVTHIACGGSTS 155
            G     A+T DG+VF+WG G + QLG    ++   P  M+ + L +  V  ++ GG  +
Sbjct: 332 CGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHT 391

Query: 156 AAVTEKGK 163
             + +  +
Sbjct: 392 VLLVKDKE 399
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query189
d1a12a_ 401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.95
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.95
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 95.75
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 95.47
d1rwia_ 260 Serine/threonine-protein kinase PknD {Mycobacteriu 84.19
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=226.48  Aligned_cols=173  Identities=28%  Similarity=0.421  Sum_probs=140.7

Q ss_pred             CceEecCCCCCCcccCCCCCCCCCCCCcccCcccccCCCCEEEEEcCcceeEEEeCCCcEEEecCCCCCccCCCCCCCCc
Q 045739            1 ELYTWGRDEGEGRLGLGPGRGPNEAGGLSIPSKVKALPVPVAAVSCGGFFTMVLTEEGQLWNWGANSNYELGRGDRVGGW   80 (189)
Q Consensus         1 ~v~~wG~n~~~gqlG~~~~~~~~~~~~~~~p~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~   80 (189)
                      +||+||.|. +||||.++...     ....|..+... .+|++|+||..|++||+++|+||+||.|.+||||.+......
T Consensus        16 ~vy~wG~n~-~GqLG~g~~~~-----~~~~P~~v~~~-~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~~   88 (401)
T d1a12a_          16 LVLTLGQGD-VGQLGLGENVM-----ERKKPALVSIP-EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGS   88 (401)
T ss_dssp             EEEEEEECT-TSTTCSCTTCC-----EEEEEEEECCS-SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTG
T ss_pred             EEEEEeCCC-CCCCCCCCCCc-----eeccCEEeCCC-CCeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCcccccccc
Confidence            589999995 99999985432     14566666543 489999999999999999999999999999999998877776


Q ss_pred             ceeeeCCCCCCcEEEEEcCCceEEEEeCCCCEEEEecCCCCCCCCCCCCC-ccccEEeccccCccEEEEEeeCCeeEEEe
Q 045739           81 KPKLLPNLVDVRIIQIANGGYHSLALTDDGKVFSWGYGGHGQLGHSFTQN-QKVPMVIEALADEFVTHIACGGSTSAAVT  159 (189)
Q Consensus        81 ~~~~~~~~~~~~i~~v~~g~~~t~~l~~~g~vy~~G~~~~gq~g~~~~~~-~~~~~~~~~~~~~~i~~v~~g~~~~~~lt  159 (189)
                      .+.+.......+|++|+||..|+++++++|+||+||.+...+.+...... ...+.........+|++|+||..|+++++
T Consensus        89 ~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~  168 (401)
T d1a12a_          89 EMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLT  168 (401)
T ss_dssp             GGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEE
T ss_pred             cccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEecccceeeee
Confidence            66666666778999999999999999999999999988666544332222 12233333444567999999999999999


Q ss_pred             cCCCEEEecCCCCCcccCCCC
Q 045739          160 EKGKLYMWGNAKDSQLGVPGL  180 (189)
Q Consensus       160 ~~g~vy~wG~n~~gqlg~~~~  180 (189)
                      ++|++|+||.|..+|||....
T Consensus       169 ~~g~~~~~G~n~~gqlg~~~~  189 (401)
T d1a12a_         169 ADGDLYTLGCGEQGQLGRVPE  189 (401)
T ss_dssp             TTSCEEEEECCTTSTTCSCGG
T ss_pred             cCCcccccccCCccccCCCCc
Confidence            999999999999999987643
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure