Citrus Sinensis ID: 045782

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MRPNWELKQCCNHEQVVFLVTVSVCTVVILAVCLDFSQVLSLRYCHLNVESSRFVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEVCPCPCNGIGWGIIWGLISFFFLCGAMYFGLVILS
Secondary Structure (PSIPRED)
cccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccHHHHHHHHHcccccccEEEEEEEEcccHHccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHccccHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrpnwelkqccnhEQVVFLVTVSVCTVVILAVCLDFSQVLSLRYchlnvessRFVIFLGVIWVLQETTDIRILRYIILFIGkcphcmydgadiyddlisrrvhssdaekfaevcpcpcngigwGIIWGLISFFFLCGAMYFGLVILS
Flexible Loop (DISEMBL)
MRPNWELKQCCNHEQVVFLVTVSVCTVVILAVCLDFSQVLSLRYCHLNVESSRFVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEVCPCPCNGIGWGIIWGLISFFFLCGAMYFGLVILS
Low Complexity Region (SEG)
MRPNWELKQCCNHEQvvflvtvsvctvvilavcLDFSQVLSLRYCHLNVESSRFVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEVCPCPCNgigwgiiwgliSFFFLCGAMYFGLVILS
Disordered region (IsUnstruct)
****WELKQCCNHEQVVFLVTVSVCTVVILAVCLDFSQVLSLRYCHLNVESSRFVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEVCPCPCNGIGWGIIWGLISFFFLCGAMYFGLVIL*
Disordered Region (DISOPRED)
**PNWELKQCCNHEQVVFLVTVSVCTVVILAVCLDFSQVLSLRYCHLNVESSRFVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEVCPCPCNGIGWGIIWGLISFFFLCGAMYFGLVILS
Disordered Region (DISEMBL)
MRPNWELKQCCNHEQVVFLVTVSVCTVVILAVCLDFSQVLSLRYCHLNVESSRFVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEVCPCPCNGIGWGIIWGLISFFFLCGAMYFGLVILS
Disordered Region (DISPRO)
*RPNWELKQCCNHEQVVFLVTVSVCTVVILAVCLDFSQVLSLRYCHLNVESSRFVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEVCPCPCNGIGWGIIWGLISFFFLCGAMYFGLVILS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRPNWELKQCCNHEQVVFLVTVSVCTVVILAVCLDFSQVLSLRYCHLNVESSRFVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEVCPCPCNGIGWGIIWGLISFFFLCGAMYFGLVILS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
449439085	234	PREDICTED: uncharacterized protein LOC10	0.632	0.397	0.787	3e-36
297734221	462	unnamed protein product [Vitis vinifera]	0.891	0.283	0.6	8e-36
225455968	233	PREDICTED: uncharacterized protein LOC10	0.897	0.566	0.595	1e-35
224135397	234	predicted protein [Populus trichocarpa]	0.632	0.397	0.797	2e-35
356511299	234	PREDICTED: uncharacterized protein LOC10	0.632	0.397	0.776	3e-35
449441740	233	PREDICTED: uncharacterized protein LOC10	0.870	0.549	0.583	1e-33
225452059	233	PREDICTED: uncharacterized protein LOC10	0.632	0.399	0.723	1e-33
224079325	233	predicted protein [Populus trichocarpa]	0.632	0.399	0.691	3e-32
351721488	247	uncharacterized protein LOC100306005 [Gl	0.632	0.376	0.691	5e-32
356527494	234	PREDICTED: uncharacterized protein LOC10	0.632	0.397	0.691	8e-32

>gi|449439085|ref|XP_004137318.1| PREDICTED: uncharacterized protein LOC101214542 [Cucumis sativus] gi|449520619|ref|XP_004167331.1| PREDICTED: uncharacterized protein LOC101228875 [Cucumis sativus]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/94 (78%), Positives = 83/94 (88%), Gaps = 1/94 (1%)

Query: 54  FVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEV 113
           F++FLGVIWVLQETT +R+LRY+ILFIG   + ++   DIYDDLISRRVHSSDAEKFAEV
Sbjct: 142 FIVFLGVIWVLQETTKVRVLRYVILFIG-VMNSLFSVYDIYDDLISRRVHSSDAEKFAEV 200

Query: 114 CPCPCNGIGWGIIWGLISFFFLCGAMYFGLVILS 147
           CPCPCNG+GWGIIWG ISF FLCGAMY GLVILS
Sbjct: 201 CPCPCNGVGWGIIWGFISFIFLCGAMYLGLVILS 234

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734221|emb|CBI15468.3| unnamed protein product [Vitis vinifera]

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 81/135 (60%), Positives = 100/135 (74%), Gaps = 4/135 (2%)

Query: 16  VVFLVTVSVCTVVILAVCLDFSQVLSL---RYCHLNVESSRFVIFLGVIWVLQETTDIRI 72
           V+ + + +V T  I A C  F+ ++ L   +   L      F+I + V+W+LQETT+IRI
Sbjct: 329 VLIIASTNVLTAKIAAGCFAFALLVVLFVAKNWTLRGLCIGFIILIAVVWLLQETTEIRI 388

Query: 73  LRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEVCPCPCNGIGWGIIWGLISF 132
           LRYIILFIG   + ++   DIYDDLISRRV+SSDAEKFAEVCPCPCNG+GWG+IWGLISF
Sbjct: 389 LRYIILFIG-VMNSLFSVYDIYDDLISRRVNSSDAEKFAEVCPCPCNGVGWGVIWGLISF 447

Query: 133 FFLCGAMYFGLVILS 147
            FLCGAMY GLVILS
Sbjct: 448 LFLCGAMYLGLVILS 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455968|ref|XP_002278471.1| PREDICTED: uncharacterized protein LOC100247427 [Vitis vinifera]

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 100/136 (73%), Gaps = 4/136 (2%)

Query: 15  QVVFLVTVSVCTVVILAVCLDFSQVLSL---RYCHLNVESSRFVIFLGVIWVLQETTDIR 71
            V+ + + +V T  I A C  F+ ++ L   +   L      F+I + V+W+LQETT+IR
Sbjct: 99  MVLIIASTNVLTAKIAAGCFAFALLVVLFVAKNWTLRGLCIGFIILIAVVWLLQETTEIR 158

Query: 72  ILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEVCPCPCNGIGWGIIWGLIS 131
           ILRYIILFIG   + ++   DIYDDLISRRV+SSDAEKFAEVCPCPCNG+GWG+IWGLIS
Sbjct: 159 ILRYIILFIG-VMNSLFSVYDIYDDLISRRVNSSDAEKFAEVCPCPCNGVGWGVIWGLIS 217

Query: 132 FFFLCGAMYFGLVILS 147
           F FLCGAMY GLVILS
Sbjct: 218 FLFLCGAMYLGLVILS 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135397|ref|XP_002322063.1| predicted protein [Populus trichocarpa] gi|222869059|gb|EEF06190.1| predicted protein [Populus trichocarpa]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/94 (79%), Positives = 81/94 (86%), Gaps = 1/94 (1%)

Query: 54  FVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEV 113
           FV+FLGV+WVLQETT I ILRYIILFIG   + ++   DIYDDLISRRVHSSDAEKFAEV
Sbjct: 142 FVLFLGVVWVLQETTKIHILRYIILFIG-VMNSLFSVYDIYDDLISRRVHSSDAEKFAEV 200

Query: 114 CPCPCNGIGWGIIWGLISFFFLCGAMYFGLVILS 147
           CPCPCNG GWG IWG+ISF FLCGAMY GLVILS
Sbjct: 201 CPCPCNGAGWGFIWGVISFLFLCGAMYLGLVILS 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511299|ref|XP_003524364.1| PREDICTED: uncharacterized protein LOC100814166 [Glycine max]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/94 (77%), Positives = 82/94 (87%), Gaps = 1/94 (1%)

Query: 54  FVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEV 113
           F+IFLGVIW+LQETT +RILRYIILFIG   + ++   DIYDDLISRRVHSSDAEKFAEV
Sbjct: 142 FIIFLGVIWILQETTKVRILRYIILFIG-VMNSLFSVYDIYDDLISRRVHSSDAEKFAEV 200

Query: 114 CPCPCNGIGWGIIWGLISFFFLCGAMYFGLVILS 147
           CPCPC G+GWG+IWGLISF FLCGA+Y G VILS
Sbjct: 201 CPCPCTGVGWGVIWGLISFVFLCGAVYLGAVILS 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441740|ref|XP_004138640.1| PREDICTED: uncharacterized protein LOC101216469 [Cucumis sativus] gi|449490096|ref|XP_004158506.1| PREDICTED: uncharacterized protein LOC101228190 [Cucumis sativus]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 97/132 (73%), Gaps = 4/132 (3%)

Query: 19  LVTVSVCTVVILAVCLDFSQVLSL---RYCHLNVESSRFVIFLGVIWVLQETTDIRILRY 75
           L + ++ T  I A CL  + ++ L   +   L      F+IFL V+WVLQETT +RILRY
Sbjct: 103 LASTNLLTARIAAGCLGLALLVVLFIAKNWTLRGLCVGFIIFLAVVWVLQETTTVRILRY 162

Query: 76  IILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEVCPCPCNGIGWGIIWGLISFFFL 135
           +ILFIG   + ++   DIYDDLISRRV+SSDAEKFAE+CPCPCNGIGWG+IWG+ISF FL
Sbjct: 163 VILFIG-VMNSLFSVYDIYDDLISRRVNSSDAEKFAELCPCPCNGIGWGVIWGMISFIFL 221

Query: 136 CGAMYFGLVILS 147
           C ++Y GLVILS
Sbjct: 222 CASIYLGLVILS 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452059|ref|XP_002283944.1| PREDICTED: uncharacterized protein LOC100253235 [Vitis vinifera] gi|296087266|emb|CBI33640.3| unnamed protein product [Vitis vinifera]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/94 (72%), Positives = 80/94 (85%), Gaps = 1/94 (1%)

Query: 54  FVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEV 113
           F+IFL +IWVLQETT +RILR+ ILF+G   + ++   DIYDDLISRRVHSSDAEKFAE+
Sbjct: 141 FIIFLAIIWVLQETTKVRILRFFILFMG-VMNSLFSVYDIYDDLISRRVHSSDAEKFAEI 199

Query: 114 CPCPCNGIGWGIIWGLISFFFLCGAMYFGLVILS 147
           CPCPCNG+GWG+IWG+ISF FL  AMY GLVILS
Sbjct: 200 CPCPCNGVGWGVIWGMISFIFLAAAMYLGLVILS 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079325|ref|XP_002305821.1| predicted protein [Populus trichocarpa] gi|222848785|gb|EEE86332.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 79/94 (84%), Gaps = 1/94 (1%)

Query: 54  FVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEV 113
           F+IFL V+WVLQE T +RILRY+ILFIG   + ++   DIYDDLISRRVH+SDAEKFAE+
Sbjct: 141 FIIFLAVVWVLQEKTTVRILRYVILFIG-VMNSLFSVYDIYDDLISRRVHTSDAEKFAEI 199

Query: 114 CPCPCNGIGWGIIWGLISFFFLCGAMYFGLVILS 147
           CPCPC G+GWG+IWG+ISF FL  ++Y GLVILS
Sbjct: 200 CPCPCTGVGWGVIWGIISFLFLSASIYLGLVILS 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721488|ref|NP_001236187.1| uncharacterized protein LOC100306005 [Glycine max] gi|255627249|gb|ACU13969.1| unknown [Glycine max]

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 79/94 (84%), Gaps = 1/94 (1%)

Query: 54  FVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEV 113
           F++F+ VIW+LQE T + +LRY+ILFIG   + ++   DIYDDLISRRVHSSDAEKFAEV
Sbjct: 141 FIVFIAVIWLLQEKTTVHVLRYVILFIG-VMNSLFSVYDIYDDLISRRVHSSDAEKFAEV 199

Query: 114 CPCPCNGIGWGIIWGLISFFFLCGAMYFGLVILS 147
           CPCPCNG GWG+IWG+ISF FLC ++Y GLVILS
Sbjct: 200 CPCPCNGFGWGVIWGMISFAFLCASLYLGLVILS 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527494|ref|XP_003532344.1| PREDICTED: uncharacterized protein LOC100816181 [Glycine max]

 Score =  141 bits (356), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 79/94 (84%), Gaps = 1/94 (1%)

Query: 54  FVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEV 113
           F++F+ VIW+LQE T + +LRY+ILFIG   + ++   DIYDDLISRRVHSSDAEKFAEV
Sbjct: 141 FIVFIAVIWLLQEKTTVHVLRYVILFIG-VMNSLFSVYDIYDDLISRRVHSSDAEKFAEV 199

Query: 114 CPCPCNGIGWGIIWGLISFFFLCGAMYFGLVILS 147
           CPCPCNG GWG+IWG+ISF FLC ++Y GLVILS
Sbjct: 200 CPCPCNGFGWGVIWGMISFAFLCASLYLGLVILS 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:2019743	234	AT1G67060 "AT1G67060" [Arabido	0.625	0.393	0.606	5.3e-30
ASPGD|ASPL0000071635	269	AN4854 [Emericella nidulans (t	0.265	0.144	0.5	0.00094

TAIR|locus:2019743 AT1G67060 "AT1G67060" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
 Identities = 57/94 (60%), Positives = 68/94 (72%)

Query:    54 FVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEV 113
             F++FL VIWVLQE T ++ILRY+ILFIG   + ++   DIYDDLISRRVHSSDAEKFAE+
Sbjct:   143 FIVFLAVIWVLQELTTVKILRYVILFIGVM-NSLFSVYDIYDDLISRRVHSSDAEKFAEI 201

Query:   114 CPCPCNXXXXXXXXXXXSFFFLCGAMYFGLVILS 147
             CPC C            SF FLC ++Y GLVILS
Sbjct:   202 CPC-CTGCGWGVIWGMISFAFLCASLYLGLVILS 234

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

ASPGD|ASPL0000071635 AN4854 [Emericella nidulans (taxid:162425)]

 Score = 90 (36.7 bits), Expect = 0.00094, P = 0.00094
 Identities = 20/40 (50%), Positives = 28/40 (70%)

Query:    73 LRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAE 112
             L++++LFIG     +Y   DI DDLI R+V+SSDA  FA+
Sbjct:   180 LKWVVLFIGVMS-ALYSVWDICDDLILRKVNSSDASVFAQ 218


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.333   0.145   0.495    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      147       118   0.00091  102 3  11 21  0.37    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  147 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.86u 0.16s 9.02t   Elapsed:  00:00:00
  Total cpu time:  8.86u 0.16s 9.02t   Elapsed:  00:00:00
  Start:  Fri May 10 05:09:24 2013   End:  Fri May 10 05:09:24 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017703001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (233 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	147
pfam13398	201	pfam13398, Peptidase_M50B, Peptidase M50B-like	2e-09

>gnl|CDD|222102 pfam13398, Peptidase_M50B, Peptidase M50B-like

 Score = 53.3 bits (129), Expect = 2e-09
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 55  VIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEVC 114
            + L + W+        +L ++ +F+      +    DI DDLI RR  SSDA++ AE+ 
Sbjct: 126 ALLLALWWLAPPQVLAFVLLFLGVFL-----LLGAVRDI-DDLIRRRAPSSDADQLAELT 179

Query: 115 PCPCNGIGWGIIWGLISFFFLCGA 138
             P     WG +W LIS   L   
Sbjct: 180 GLP--AWLWGGLWLLISLGCLALG 201

This is a family of bacterial and plant peptidases in the same family as MEROPS:M50B. Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
PF13398	200	Peptidase_M50B: Peptidase M50B-like	99.8

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=99.80  E-value=2.2e-20  Score=149.20  Aligned_cols=88  Identities=35%  Similarity=0.568  Sum_probs=84.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhheeecccCcchhheeeeeecccCCCcccceeehhhhhhhhcCCCcHHHHHHHCCCCCCCcc
Q 045782           43 RYCHLNVESSRFVIFLGVIWVLQETTDIRILRYIILFIGKCPHCMYDGADIYDDLISRRVHSSDAEKFAEVCPCPCNGIG  122 (147)
Q Consensus        43 rn~~~~~l~l~fi~lli~~Wfi~~~~~~~~LR~~~LfiGVms~~lYsvwDI~DDlI~Rkvn~SDA~~fA~l~~~~~~s~~  122 (147)
                      ||+++.+.++++.++++++|+.++   .+.+|++.+|+|+|+ ++|+++|+ ||++.||.|+|||.++||++|+  |+.+
T Consensus       112 r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ig~~~-~l~~~~~i-~~l~~~~~~~sDa~~la~lt~~--p~~~  184 (200)
T PF13398_consen  112 RNWFGILVVILFGALLIALWFFAP---PWILRFILLFIGVFL-LLYSVRDI-DDLFRRRVNASDADQLARLTGL--PAWV  184 (200)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH-HHHHHcCH-HHHhcCCCCCChHHHHHHHHCC--CHHH
Confidence            999999999999999999999997   899999999999999 99999998 9999999999999999999998  8999


Q ss_pred             hhHHHHHHHHHHHHH
Q 045782          123 WGIIWGLISFFFLCG  137 (147)
Q Consensus       123 WGviW~iis~~f~~~  137 (147)
                      |+.+|.++|+.++.+
T Consensus       185 W~~~~~~~s~~~l~~  199 (200)
T PF13398_consen  185 WGLLWLAISLACLAA  199 (200)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998764

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00