Citrus Sinensis ID: 045786

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450---
MPSFDSQFSNSEKLVTFSCTEGTTIQSNRGSNLGAFEQSVGFRLGDAVNLTGNTVLNSTKASGQANTSDPLQIVTFDKSPTASNFNLSTIQVESHRLPFEKNHRSNLVSISSGNTENWGESNMADASPRTDISTDADTDEKNQRFDRGQSTAVVASDSSDRSKDKLDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEQNKQINELRSAVNSHASDTELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFMWLGGFRSSELLKLLVNQLEPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHcccc
ccccccccccccccccccccccccccccccccHHHHHccccccHHHccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHEHHHHcccccHHHHHHHHHccccHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
mpsfdsqfsnseklvtfsctegttiqsnrgsnlgafEQSVGFRLGdavnltgntvlnstkasgqantsdplqivtfdksptasnfnlstiqveshrlpfeknhrsnlvsissgntenwgesnmadasprtdistdadtdeknqrfdrgqstavvasdssdrskdklDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGifisssgdqahsmsgngaMAFDVEYARWLEEQNKQINELRSAvnshasdtELRMVVDGIMAHYDEIFRLKANAAKADVFHLLsgmwktpaercfmwlggfrssELLKLLVNQleplteqqlvgignlqqsSQQAEDALSQGMEALQQSLAETlssgslgssgsgnvANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE
mpsfdsqfsnsekLVTFSCTEGttiqsnrgsnLGAFEQSVGFRLGDAVNLTGNTVLNstkasgqantsdPLQIVTFDKSPTASNFNLSTIQVESHRLPFEKNHRSNLVSissgntenwgesnmadasprtdistdadtdeknqrfdrgqstavvasdssdrskdkldqktlRRLAQNReaarksrlrkkAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEQNKQINELRsavnshasdtELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFMWLGGFRSSELLKLLVNQLEPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRAlsslwmarpre
MPSFDSQFSNSEKLVTFSCTEGTTIQSNRGSNLGAFEQSVGFRLGDAVNLTGNTVLNSTKASGQANTSDPLQIVTFDKSPTASNFNLSTIQVESHRLPFEKNHRSNLVSISSGNTENWGESNMADASPRTDISTDADTDEKNQRFDRGQSTAVVAsdssdrskdkldqkTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTqleqelqrarqqGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEQNKQINELRSAVNSHASDTELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFMWLGGFRSSELLKLLVNQLEPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQSLAETlssgslgssgsgNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE
**************VTFSCTE***********LGAFEQSVGFRLGDAVNLTGNTVL**********************************************************************************************************************************************************************************MAFDVEYARWLEE******************TELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFMWLGGFRSSELLKLLVNQLEPLTEQQLVGI************************************************MAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWM*****
****************************************GF*********************************************************************************************************************************************************************************************NGAMAFDVEYARWLEEQNKQINELRS*********ELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFMWLGGFRSSELLKLLVNQLEPLTEQQLVGIGNLQ*************MEALQQSLAETLS*******************AMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMAR***
***********EKLVTFSCTEGTTIQSNRGSNLGAFEQSVGFRLGDAVNLTGNTVLNSTKASGQANTSDPLQIVTFDKSPTASNFNLSTIQVESHRLPFEKNHRSNLVSISSGNTENWGESNMADASPRTDISTD*******************************DQKTLRRLAQ*****************QLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEQNKQINELRSAVNSHASDTELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFMWLGGFRSSELLKLLVNQLEPLTEQQLVGIGNL*************GMEALQQSLAETLSSGSLGSSGSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE
***************************NRGSNLGAFEQSVGFRLGDAVNLTGNTVLNSTKASGQANTSDPLQIVTFDKSP*************************************************************************************LDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQA**MSGNGAMAFDVEYARWLEEQNKQINELRSAVNSHASDTELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFMWLGGFRSSELLKLLVNQLEPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLG**GSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMA****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPSFDSQFSNSEKLVTFSCTEGTTIQSNRGSNLGAFEQSVGFRLGDAVNLTGNTVLNSTKASGQANTSDPLQIVTFDKSPTASNFNLSTIQVESHRLPFEKNHRSNLVSISSGNTENWGESNMADASPRTDISTDADTDEKNQRFDRGQSTAVVASDSSDRSKDKLDQKTLRRLAQNREAARKSRLRxxxxxxxxxxxxxxxxxxxxxxxxxxxxGIFISSSGDQAHSMSGNGAMAFDVEYARWxxxxxxxxxxxxxxxxxxxxxTELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFMWLGGFRSSELLKLLVNQLEPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query453 2.2.26 [Sep-21-2011]
Q41558476 Transcription factor HBP- N/A no 0.955 0.909 0.704 1e-174
O24160456 TGACG-sequence-specific D N/A no 0.958 0.951 0.664 1e-167
Q39140330 Transcription factor TGA6 yes no 0.728 1.0 0.824 1e-153
P23923332 Transcription factor HBP- N/A no 0.726 0.990 0.814 1e-149
P43273330 Transcription factor TGA2 no no 0.721 0.990 0.823 1e-146
Q39163330 Transcription factor TGA5 no no 0.728 1.0 0.794 1e-140
Q9SX27452 Transcription factor PERI no no 0.905 0.907 0.579 1e-119
Q39162364 Transcription factor TGA4 no no 0.666 0.829 0.567 4e-96
Q39234384 Transcription factor TGA3 no no 0.708 0.835 0.547 4e-95
Q93ZE2368 Transcription factor TGA7 no no 0.717 0.883 0.522 4e-93
>sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2 Back     alignment and function desciption
 Score =  610 bits (1574), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 312/443 (70%), Positives = 354/443 (79%), Gaps = 10/443 (2%)

Query: 20  TEGTTIQSNRGSNLGAFEQSVGFRLGDAVNLTGNTVLNSTKASGQANTSDPLQIVTFDKS 79
           T    +Q +R ++LGA   S GFR+ D  N + N + N  K +  A TSDPLQ   + KS
Sbjct: 35  TNVNVMQPSRVADLGALAHSAGFRIEDLANFSTNNLFN-LKPNTHAYTSDPLQFGNYGKS 93

Query: 80  PTASNFNLSTIQV------ESHRLPFEKNHRSNLVSISSGNTENWGESNMADASPRTDIS 133
            + ++   +          +   L  +K  + NLV++ + N +NWGES+MAD SPRTD S
Sbjct: 94  ISPTDLATTAAAAAAVTAVDPQALLQQKGVQPNLVALRTHNNDNWGESSMADTSPRTDTS 153

Query: 134 TDADTD--EKNQRFDRGQSTAVVASDSSDRSKDKLDQKTLRRLAQNREAARKSRLRKKAY 191
           TD D D  E+NQ F++GQ  A  ASDSSD+S+DKLD K+LRRLAQNREAARKSRLRKKAY
Sbjct: 154 TDPDIDIDERNQMFEQGQLAAPTASDSSDKSRDKLDHKSLRRLAQNREAARKSRLRKKAY 213

Query: 192 VQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEQNKQ 251
           +Q LESSRLKLTQLEQELQRARQQGIFISSSGDQ+ S SGNGA+AFD+EYARWLEE NK 
Sbjct: 214 IQNLESSRLKLTQLEQELQRARQQGIFISSSGDQSQSASGNGAVAFDMEYARWLEEHNKH 273

Query: 252 INELRSAVNSHASDTELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFM 311
           INELR+A N+HA D +LR +VD IM+ YDE FRLK  AAKADVFH+LSGMWKTPAERCFM
Sbjct: 274 INELRAAANAHAGDDDLRKIVDSIMSQYDEFFRLKGVAAKADVFHVLSGMWKTPAERCFM 333

Query: 312 WLGGFRSSELLKLLVNQLEPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQSLAETLSS 371
           WLGGFRSSELLKLL  QLEPLTEQQL GI NLQQSSQQAEDALSQGMEALQQSLAETL+S
Sbjct: 334 WLGGFRSSELLKLLAGQLEPLTEQQLTGICNLQQSSQQAEDALSQGMEALQQSLAETLAS 393

Query: 372 GSLGSSG-SGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARAL 430
           GSLG +G SGNVA+YMGQMAMAMGKLGTLE F+RQADNLR QTLQQM RILTTRQSARAL
Sbjct: 394 GSLGPAGSSGNVASYMGQMAMAMGKLGTLENFLRQADNLRLQTLQQMQRILTTRQSARAL 453

Query: 431 LAIHDYFSRLRALSSLWMARPRE 453
           LAI DYFSRLRALSSLW+ARPRE
Sbjct: 454 LAISDYFSRLRALSSLWLARPRE 476
Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Triticum aestivum (taxid: 4565)
>sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1 Back     alignment and function description
>sp|Q39140|TGA6_ARATH Transcription factor TGA6 OS=Arabidopsis thaliana GN=TGA6 PE=1 SV=2 Back     alignment and function description
>sp|P23923|HBP1B_WHEAT Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1 Back     alignment and function description
>sp|P43273|TGA2_ARATH Transcription factor TGA2 OS=Arabidopsis thaliana GN=TGA2 PE=1 SV=1 Back     alignment and function description
>sp|Q39163|TGA5_ARATH Transcription factor TGA5 OS=Arabidopsis thaliana GN=TGA5 PE=1 SV=2 Back     alignment and function description
>sp|Q9SX27|PAN_ARATH Transcription factor PERIANTHIA OS=Arabidopsis thaliana GN=PAN PE=1 SV=1 Back     alignment and function description
>sp|Q39162|TGA4_ARATH Transcription factor TGA4 OS=Arabidopsis thaliana GN=TGA4 PE=1 SV=2 Back     alignment and function description
>sp|Q39234|TGA3_ARATH Transcription factor TGA3 OS=Arabidopsis thaliana GN=TGA3 PE=1 SV=1 Back     alignment and function description
>sp|Q93ZE2|TGA7_ARATH Transcription factor TGA7 OS=Arabidopsis thaliana GN=TGA7 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query453
255543929463 Transcription factor HBP-1b(c1), putativ 0.986 0.965 0.817 0.0
359487138469 PREDICTED: transcription factor HBP-1b(c 0.991 0.957 0.819 0.0
15148924467 TGA-type basic leucine zipper protein TG 0.984 0.955 0.773 0.0
356556792468 PREDICTED: TGACG-sequence-specific DNA-b 0.982 0.950 0.767 0.0
351721009467 bZIP transcription factor bZIP99 [Glycin 0.984 0.955 0.764 0.0
357515275466 TGA transcription factor [Medicago trunc 0.977 0.950 0.766 0.0
388518131466 unknown [Medicago truncatula] 0.977 0.950 0.764 0.0
363814489429 uncharacterized protein LOC100816123 [Gl 0.940 0.993 0.767 0.0
224139726463 predicted protein [Populus trichocarpa] 0.986 0.965 0.731 1e-180
359482245451 PREDICTED: TGACG-sequence-specific DNA-b 0.949 0.953 0.751 1e-180
>gi|255543929|ref|XP_002513027.1| Transcription factor HBP-1b(c1), putative [Ricinus communis] gi|223548038|gb|EEF49530.1| Transcription factor HBP-1b(c1), putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/454 (81%), Positives = 402/454 (88%), Gaps = 7/454 (1%)

Query: 1   MPSFDSQFSNSEKLVTFSCTEGTTIQSNRGSNLGAFEQSVGFRLGDAVNLTGNTVLNSTK 60
           MPSF+   SN+  +      EG+TI S R S+ GAF+QSV FRL DAV+L+ NTV NS K
Sbjct: 16  MPSFELPISNALGI------EGSTIHSYRVSDFGAFDQSVAFRLEDAVDLSTNTVFNSAK 69

Query: 61  ASGQANTSDPLQIVTFDKSPTASNFNLSTIQVESHRLPFEKNHRSNLVSISSGNTENWGE 120
           A+ QA+TSDPL I +FDK   + N N S  Q+ES RLP EK  + N++++SSGNTENW E
Sbjct: 70  ANNQADTSDPLHIGSFDKLTASFNINPSPAQLESQRLPLEKGQQLNIIALSSGNTENWEE 129

Query: 121 SNMADASPRTDISTDADTDEKNQRFDRGQSTAVVASDSSDRSKDKLDQKTLRRLAQNREA 180
           SNMAD SPRTD+STD DTD+KNQRFDRG STA+ ASDSSDRSKDK+DQKTLRRLAQNREA
Sbjct: 130 SNMADGSPRTDLSTDGDTDDKNQRFDRGLSTAIAASDSSDRSKDKMDQKTLRRLAQNREA 189

Query: 181 ARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVE 240
           ARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVE
Sbjct: 190 ARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVE 249

Query: 241 YARWLEEQNKQINELRSAVNSHASDTELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSG 300
           YARWLEEQN+QINELRSAVNSHA D ELR+++DG+MAHYDEIFRLK+NAAKADVFHLLSG
Sbjct: 250 YARWLEEQNRQINELRSAVNSHAGDAELRIIIDGVMAHYDEIFRLKSNAAKADVFHLLSG 309

Query: 301 MWKTPAERCFMWLGGFRSSELLKLLVNQLEPLTEQQLVGIGNLQQSSQQAEDALSQGMEA 360
           MWKTPAERCF+WLGGFRSSELLKLLVNQLEPLTEQQLVG+GNLQQSSQQAEDALSQGMEA
Sbjct: 310 MWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGLGNLQQSSQQAEDALSQGMEA 369

Query: 361 LQQSLAET-LSSGSLGSSGSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHR 419
           LQQSLAET  S     S  SGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHR
Sbjct: 370 LQQSLAETLSSGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHR 429

Query: 420 ILTTRQSARALLAIHDYFSRLRALSSLWMARPRE 453
           ILTTRQSARALLAIHDYFSRLRALSSLW+ARPRE
Sbjct: 430 ILTTRQSARALLAIHDYFSRLRALSSLWLARPRE 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359487138|ref|XP_002263159.2| PREDICTED: transcription factor HBP-1b(c1)-like [Vitis vinifera] gi|296087850|emb|CBI35106.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15148924|gb|AAK84889.1|AF402608_1 TGA-type basic leucine zipper protein TGA2.1 [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|356556792|ref|XP_003546706.1| PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1 [Glycine max] Back     alignment and taxonomy information
>gi|351721009|ref|NP_001237963.1| bZIP transcription factor bZIP99 [Glycine max] gi|113367202|gb|ABI34658.1| bZIP transcription factor bZIP99 [Glycine max] Back     alignment and taxonomy information
>gi|357515275|ref|XP_003627926.1| TGA transcription factor [Medicago truncatula] gi|355521948|gb|AET02402.1| TGA transcription factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|388518131|gb|AFK47127.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|363814489|ref|NP_001242879.1| uncharacterized protein LOC100816123 [Glycine max] gi|255634662|gb|ACU17693.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224139726|ref|XP_002323247.1| predicted protein [Populus trichocarpa] gi|222867877|gb|EEF05008.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359482245|ref|XP_003632741.1| PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Vitis vinifera] gi|297739945|emb|CBI30127.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query453
UNIPROTKB|Q9SQK1325 TGA2.2 "BZIP transcription fac 0.717 1.0 0.764 7.8e-126
TAIR|locus:2169394330 AHBP-1B "AT5G06950" [Arabidops 0.728 1.0 0.719 1.5e-122
TAIR|locus:2082234355 TGA6 "AT3G12250" [Arabidopsis 0.677 0.864 0.730 3.2e-121
TAIR|locus:2169409330 OBF5 "AT5G06960" [Arabidopsis 0.728 1.0 0.691 4.2e-118
TAIR|locus:2026890452 PAN "AT1G68640" [Arabidopsis t 0.794 0.796 0.591 2.2e-105
TAIR|locus:2199968481 TGA9 "AT1G08320" [Arabidopsis 0.607 0.571 0.595 3e-85
TAIR|locus:2030551384 TGA3 "AT1G22070" [Arabidopsis 0.825 0.973 0.458 4.2e-79
TAIR|locus:2184078364 TGA4 "AT5G10030" [Arabidopsis 0.609 0.758 0.566 9e-77
TAIR|locus:2029366368 TGA7 "AT1G77920" [Arabidopsis 0.598 0.736 0.563 1.3e-75
TAIR|locus:2171820368 TGA1 "AT5G65210" [Arabidopsis 0.728 0.896 0.478 1.2e-72
UNIPROTKB|Q9SQK1 TGA2.2 "BZIP transcription factor" [Nicotiana tabacum (taxid:4097)] Back     alignment and assigned GO terms
 Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
 Identities = 253/331 (76%), Positives = 272/331 (82%)

Query:   123 MADASPRTDISTDADTDEKNQRFDRGQSTAVVAXXXXXXXXXXXXXXTLRRLAQNREAAR 182
             MAD SP T  STDADT++KN RF   Q    VA              TLRRLAQNREAAR
Sbjct:     1 MADISPST--STDADTEDKN-RFLNSQQLGAVASDGSDRTRDQK---TLRRLAQNREAAR 54

Query:   183 KSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIFISSSGDQAHSMSGNGAMAFDVEYA 242
             KSRLRKKAYVQQLESSR+KLT            GIFIS SGDQ+ SMSGNGA+AFDVEYA
Sbjct:    55 KSRLRKKAYVQQLESSRMKLTQLEQELQRARQQGIFISGSGDQSQSMSGNGALAFDVEYA 114

Query:   243 RWLEEQNKQINELRSAVNSHASDTELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMW 302
             RWLEEQN++INELR AVNSHA D ELR++VDGI+AHYD+IFR+K +AAK+DVFH+LSGMW
Sbjct:   115 RWLEEQNRRINELRGAVNSHAGDGELRIIVDGILAHYDDIFRIKGDAAKSDVFHILSGMW 174

Query:   303 KTPAERCFMWLGGFRSSELLKLLVNQLEPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQ 362
             KTPAERCF+WLGGFRSSELLKLL+NQLEPLTEQQL+ I NLQQSSQQAEDALSQGMEALQ
Sbjct:   175 KTPAERCFLWLGGFRSSELLKLLINQLEPLTEQQLLAINNLQQSSQQAEDALSQGMEALQ 234

Query:   363 QSLAETXXXXXXXXXXXXNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILT 422
             QSLAET            NVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILT
Sbjct:   235 QSLAETLAGSLGPSSSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILT 294

Query:   423 TRQSARALLAIHDYFSRLRALSSLWMARPRE 453
             TRQSARALLAI DYFSRLRALSSLW+ARPRE
Sbjct:   295 TRQSARALLAISDYFSRLRALSSLWLARPRE 325
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2169394 AHBP-1B "AT5G06950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082234 TGA6 "AT3G12250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169409 OBF5 "AT5G06960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026890 PAN "AT1G68640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199968 TGA9 "AT1G08320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030551 TGA3 "AT1G22070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184078 TGA4 "AT5G10030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029366 TGA7 "AT1G77920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171820 TGA1 "AT5G65210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q41558HBP1C_WHEATNo assigned EC number0.70420.95580.9096N/Ano
O24160TGA21_TOBACNo assigned EC number0.66440.95800.9517N/Ano
P23923HBP1B_WHEATNo assigned EC number0.81430.72620.9909N/Ano
Q39140TGA6_ARATHNo assigned EC number0.82470.72841.0yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_XVI0272
hypothetical protein (463 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
pfam1414479 pfam14144, DOG1, Seed dormancy control 4e-45
smart0033865 smart00338, BRLZ, basic region leucin zipper 2e-09
pfam0017064 pfam00170, bZIP_1, bZIP transcription factor 1e-06
pfam0771654 pfam07716, bZIP_2, Basic region leucine zipper 1e-05
cd1219354 cd12193, B_zip1, basic leucine zipper DNA-binding 8e-04
>gnl|CDD|206313 pfam14144, DOG1, Seed dormancy control Back     alignment and domain information 
 Score =  151 bits (383), Expect = 4e-45
 Identities = 57/79 (72%), Positives = 69/79 (87%)

Query: 250 KQINELRSAVNSHASDTELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERC 309
           + + ELR+A+N+HASD ELR +VD ++AHYDE FRLK+ AAKADVFHLLSGMWKTPAERC
Sbjct: 1   RLLAELRAALNAHASDDELRSLVDKVLAHYDEYFRLKSAAAKADVFHLLSGMWKTPAERC 60

Query: 310 FMWLGGFRSSELLKLLVNQ 328
           F+W+GGFR SELLKLL + 
Sbjct: 61  FLWIGGFRPSELLKLLYSL 79

This family of plant proteins appears to be a highly specific controller seed dormancy. Length = 79
>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper Back     alignment and domain information
>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor Back     alignment and domain information
>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper Back     alignment and domain information
>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 453
PF1414480 DOG1: Seed dormancy control 100.0
smart0033865 BRLZ basic region leucin zipper. 98.53
PF0017064 bZIP_1: bZIP transcription factor cAMP response el 98.44
PF0771654 bZIP_2: Basic region leucine zipper; InterPro: IPR 98.39
KOG3584348 consensus cAMP response element binding protein an 97.29
PF13801125 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 96.78
COG3678160 CpxP P pilus assembly/Cpx signaling pathway, perip 96.54
KOG4343655 consensus bZIP transcription factor ATF6 [Transcri 95.86
PRK12750170 cpxP periplasmic repressor CpxP; Reviewed 95.85
PF0313192 bZIP_Maf: bZIP Maf transcription factor; InterPro: 95.54
KOG0709472 consensus CREB/ATF family transcription factor [Tr 93.81
KOG0837279 consensus Transcriptional activator of the JUN fam 90.62
PRK10455161 periplasmic protein; Reviewed 90.43
PRK12751162 cpxP periplasmic stress adaptor protein CpxP; Revi 89.92
PRK10363166 cpxP periplasmic repressor CpxP; Reviewed 89.19
PF07813100 LTXXQ: LTXXQ motif family protein; InterPro: IPR01 86.24
KOG4005292 consensus Transcription factor XBP-1 [Transcriptio 84.39
>PF14144 DOG1: Seed dormancy control Back     alignment and domain information 
Probab=100.00  E-value=8.8e-34  Score=234.00  Aligned_cols=79  Identities=66%  Similarity=1.125  Sum_probs=76.6

Q ss_pred             HHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhccCCCCChhhHHhhhhcCCCchHHHHHHHhh
Q 045786          250 KQINELRSAVNSHA-SDTELRMVVDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFMWLGGFRSSELLKLLVNQ  328 (453)
Q Consensus       250 r~l~ELR~AL~s~~-~D~eLr~LVd~vlsHY~eyfr~Ks~AAk~DVf~llSg~W~TplER~FLWIGGfRPSellkLL~~q  328 (453)
                      |++.|||+|+++|. +|.+|+.||+++|+||++||++|+.||++|||++|+|+|+||+|||||||||||||++||||+++
T Consensus         1 ~~l~eLr~al~~~~~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~~~ll~s~   80 (80)
T PF14144_consen    1 RQLNELRAALQSHADSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSPPWKSPLERCFLWIGGWRPSELFKLLYSQ   80 (80)
T ss_pred             CcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCCCCCCHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            47899999999998 89999999999999999999999999999999999999999999999999999999999999874

>smart00338 BRLZ basic region leucin zipper Back     alignment and domain information
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization Back     alignment and domain information
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization Back     alignment and domain information
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription] Back     alignment and domain information
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H Back     alignment and domain information
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription] Back     alignment and domain information
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed Back     alignment and domain information
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell Back     alignment and domain information
>KOG0709 consensus CREB/ATF family transcription factor [Transcription] Back     alignment and domain information
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription] Back     alignment and domain information
>PRK10455 periplasmic protein; Reviewed Back     alignment and domain information
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed Back     alignment and domain information
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed Back     alignment and domain information
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT) Back     alignment and domain information
>KOG4005 consensus Transcription factor XBP-1 [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
1dh3_A55 Transcription factor CREB; protein-DNA complex, tr 8e-08
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 2e-07
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 6e-06
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 9e-06
2dgc_A63 Protein (GCN4); basic domain, leucine zipper, DNA 2e-05
1gd2_E70 Transcription factor PAP1; basic leucine zipper, p 1e-04
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 2e-04
3a5t_A107 Transcription factor MAFG; protein-DNA complex, BZ 3e-04
2wt7_B90 Transcription factor MAFB; transcription, transcri 5e-04
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 8e-04
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55 Back     alignment and structure
 Score = 47.8 bits (114), Expect = 8e-08
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 169 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 215
           K   RL +NREAAR+SR +KK YV+ LE+   ++  LE + +   ++
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIEE 44
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61 Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63 Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63 Back     alignment and structure
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63 Back     alignment and structure
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70 Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87 Back     alignment and structure
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107 Back     alignment and structure
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90 Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query453
1dh3_A55 Transcription factor CREB; protein-DNA complex, tr 98.89
2dgc_A63 Protein (GCN4); basic domain, leucine zipper, DNA 98.44
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 98.14
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 98.01
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 97.94
1gd2_E70 Transcription factor PAP1; basic leucine zipper, p 97.88
2y39_A118 Nickel and cobalt resistance protein CNRR; metal b 97.34
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 96.43
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 95.31
3a5t_A107 Transcription factor MAFG; protein-DNA complex, BZ 95.28
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 94.51
3itf_A145 Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxr 93.81
3oeo_A138 Spheroplast protein Y; LTXXQ, extracytoplasmic str 86.97
2wt7_B90 Transcription factor MAFB; transcription, transcri 85.88
3o39_A108 Periplasmic protein related to spheroblast format; 81.07
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Back     alignment and structure
Probab=98.89  E-value=1.9e-09  Score=82.76  Aligned_cols=43  Identities=42%  Similarity=0.576  Sum_probs=38.4

Q ss_pred             HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045786          170 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ  215 (453)
Q Consensus       170 ~~rrLaqNREaArksRlRkKaYvqqLE~sr~kL~qleqel~rar~Q  215 (453)
                      -++|++.|||+|+.||.|||+||+.||.   ++.+|+.|-...+.|
T Consensus         2 r~rR~~~NResA~rSR~RKk~~~~~LE~---~v~~L~~eN~~L~~~   44 (55)
T 1dh3_A            2 REVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIEE   44 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999   888898887766643
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Back     alignment and structure
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A* Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Back     alignment and structure
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A Back     alignment and structure
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli} Back     alignment and structure
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Back     alignment and structure
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00