Citrus Sinensis ID: 045794
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 578 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SZ30 | 592 | Imidazole glycerol phosph | yes | no | 0.946 | 0.923 | 0.848 | 0.0 | |
| O94303 | 541 | Imidazole glycerol phosph | yes | no | 0.906 | 0.968 | 0.518 | 1e-156 | |
| Q9P4P9 | 553 | Imidazole glycerol phosph | yes | no | 0.904 | 0.945 | 0.504 | 1e-150 | |
| P33734 | 552 | Imidazole glycerol phosph | yes | no | 0.913 | 0.956 | 0.506 | 1e-149 | |
| A6UR05 | 272 | Imidazole glycerol phosph | yes | no | 0.468 | 0.996 | 0.396 | 4e-50 | |
| A5UMZ1 | 274 | Imidazole glycerol phosph | yes | no | 0.472 | 0.996 | 0.405 | 8e-50 | |
| A4G0J7 | 272 | Imidazole glycerol phosph | yes | no | 0.465 | 0.988 | 0.387 | 2e-48 | |
| O27398 | 274 | Imidazole glycerol phosph | yes | no | 0.472 | 0.996 | 0.392 | 4e-48 | |
| A6VHY8 | 272 | Imidazole glycerol phosph | yes | no | 0.463 | 0.985 | 0.378 | 7e-48 | |
| Q2NI84 | 274 | Imidazole glycerol phosph | yes | no | 0.472 | 0.996 | 0.399 | 8e-48 |
| >sp|Q9SZ30|HIS5_ARATH Imidazole glycerol phosphate synthase hisHF, chloroplastic OS=Arabidopsis thaliana GN=At4g26900 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 975 bits (2520), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/548 (84%), Positives = 513/548 (93%), Gaps = 1/548 (0%)
Query: 32 KFKSPRALSIRATS-SDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLI 90
KFKSPR+LS+RA+S SDSVVTLLDYGAGNVRS+RNA+RHLGF IKDVQTP DILNA+RLI
Sbjct: 45 KFKSPRSLSVRASSTSDSVVTLLDYGAGNVRSIRNALRHLGFSIKDVQTPGDILNADRLI 104
Query: 91 FPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIP 150
FPGVGAFA AMDVLN+TGMAEALC YIE DRPFLGICLGLQLLF SSEENGPV GLG+IP
Sbjct: 105 FPGVGAFAPAMDVLNRTGMAEALCKYIENDRPFLGICLGLQLLFDSSEENGPVKGLGVIP 164
Query: 151 GVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSST 210
G+VGRFD+S G RVP IGWNALQ+ KDSEILDDVG+ HVYFVHSYRA+PSD+NK+W+SST
Sbjct: 165 GIVGRFDASAGIRVPHIGWNALQVGKDSEILDDVGNRHVYFVHSYRAIPSDENKDWISST 224
Query: 211 CNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPTEGKALKLAKRV 270
CNYG++FI+S+RRGNVHAVQFHPEKSG+VGLSVLRRFLHPK +KP EGKA KLAKRV
Sbjct: 225 CNYGESFISSIRRGNVHAVQFHPEKSGEVGLSVLRRFLHPKLPATQKPMEGKASKLAKRV 284
Query: 271 IACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNIT 330
IACLDVR NDKGDLVVTKGDQYDVRE + ENEVRNLGKPV+LA QYYK+GADEISFLNIT
Sbjct: 285 IACLDVRTNDKGDLVVTKGDQYDVREQSNENEVRNLGKPVDLAGQYYKDGADEISFLNIT 344
Query: 331 GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390
GFRDFPLGDLPM+QVLR TS+NVFVPLTVGGGIRDFTDA+GR+YSSLEVA+EYFRSGADK
Sbjct: 345 GFRDFPLGDLPMIQVLRQTSKNVFVPLTVGGGIRDFTDASGRYYSSLEVAAEYFRSGADK 404
Query: 391 ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAV 450
ISIGSDAV AAE+++K+GVKTGKSSLEQISRVYGNQAVVVSIDPRRVY+ HP+DV +K +
Sbjct: 405 ISIGSDAVSAAEEFIKSGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYVNHPDDVPYKVI 464
Query: 451 RVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFD 510
RVT+ GPNGEEYAWYQCTV+GGREGRPIGA+ELAKAVE+LGAGEILLNCIDCDGQGKGFD
Sbjct: 465 RVTNPGPNGEEYAWYQCTVSGGREGRPIGAFELAKAVEELGAGEILLNCIDCDGQGKGFD 524
Query: 511 MDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570
+DL+KLISD+V IPVIASSGAG +HFS+VF KTNASAALAAGIFHRKEVPIQSVKEHL
Sbjct: 525 IDLVKLISDSVGIPVIASSGAGTPDHFSEVFEKTNASAALAAGIFHRKEVPIQSVKEHLQ 584
Query: 571 KEGIEVRI 578
+E IEVRI
Sbjct: 585 EERIEVRI 592
|
IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutamine amidotransferase domain provides the ammonia necessary to the cyclase domain to produce IGP and AICAR from PRFAR. Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 1EC: .EC: 3EC: .EC: - |
| >sp|O94303|HIS5_SCHPO Imidazole glycerol phosphate synthase hisHF OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=his4 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 551 bits (1419), Expect = e-156, Method: Compositional matrix adjust.
Identities = 282/544 (51%), Positives = 372/544 (68%), Gaps = 20/544 (3%)
Query: 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTG 108
+V+++DYG+GNVRS+ NA+R+LGF + ++ P DI A LIFPGVG F D L K G
Sbjct: 2 IVSIVDYGSGNVRSLINAVRYLGFETQWIRNPHDIEKAECLIFPGVGNFGFVCDSLAKQG 61
Query: 109 MAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG 168
E L Y +PF+ +C+G+Q LF+ S E GLG+ PG+V RFD+ + VP IG
Sbjct: 62 FLEPLRRYALSGKPFMAVCVGIQALFEGSVEAPHSKGLGVFPGLVQRFDNDDK-TVPHIG 120
Query: 169 WNALQITKDS--EILDDVGDHHVYFVHSYRAMPSDD---NKEWVSSTCNYG-DNFIASVR 222
WN+ + D+ E YFVHSY +P E+ +T YG + F+ ++
Sbjct: 121 WNSCAVRSDTSKEFFGMRPHDKFYFVHSY-MIPEKGLILPPEFKIATTKYGNETFVGAIV 179
Query: 223 RGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPTEGKALKL--------AKRVIACL 274
+ N A QFHPEKSG GL L+ FL T ++P G+A KL KR+IACL
Sbjct: 180 KNNFLATQFHPEKSGSAGLRCLKAFL---TGNYEQPISGEASKLIENSFGGLTKRIIACL 236
Query: 275 DVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRD 334
DVR+ND GDLVVTKGDQYDVRE + +EVRNLGKPVEL ++Y++EGADE+ FLNIT FR+
Sbjct: 237 DVRSNDAGDLVVTKGDQYDVREKSSGSEVRNLGKPVELCQRYFQEGADEVVFLNITSFRN 296
Query: 335 FPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIG 394
P+ D PMLQVL ++ VFVPLTVGGGIRD +D +G + ++EVA YFRSGADK+SIG
Sbjct: 297 CPMADAPMLQVLEKAAQTVFVPLTVGGGIRDVSDPDGTFHPAVEVAGIYFRSGADKVSIG 356
Query: 395 SDAVYAAEDYLKTGVK-TGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVT 453
SDAVYAAE Y + G K +GK+++E IS+ YGNQAVV+S+DP+R Y+ P D + V+ +
Sbjct: 357 SDAVYAAEKYYENGKKLSGKTAIETISKAYGNQAVVISVDPKRQYVKVPEDTKHHVVKTS 416
Query: 454 DLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDL 513
LGPNGE Y WYQCTV GGRE R I EL +A E +GAGE+LLNC+D DG G+D++L
Sbjct: 417 RLGPNGEAYCWYQCTVKGGREYRDIDVVELTRACEAMGAGEVLLNCMDQDGSNAGYDIEL 476
Query: 514 IKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEG 573
++L+ ++V+IPVIASSGAG +HF +VF++T+ AALAAGIFHR+ I+ VKE+L
Sbjct: 477 VRLVKNSVNIPVIASSGAGIPQHFEEVFKETDCDAALAAGIFHRQTCRIEDVKEYLAIHD 536
Query: 574 IEVR 577
+ VR
Sbjct: 537 VLVR 540
|
IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutamine amidotransferase domain provides the ammonia necessary to the cyclase domain to produce IGP and AICAR from PRFAR. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: - |
| >sp|Q9P4P9|HIS5_EMENI Imidazole glycerol phosphate synthase hisHF OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=hisHF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 531 bits (1367), Expect = e-150, Method: Compositional matrix adjust.
Identities = 278/551 (50%), Positives = 366/551 (66%), Gaps = 28/551 (5%)
Query: 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTG 108
V LLDY AGNVRS+ NAI +G+ ++ V++P D+ + +LI PGVG F + L+ G
Sbjct: 3 TVHLLDYVAGNVRSLVNAINKVGYEVEWVRSPSDLKDVEKLILPGVGHFGHCLSQLSSGG 62
Query: 109 MAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG 168
+ + +I +PF+GIC+GLQ LF+SSEE+ + GLG IP + +FD+ VP IG
Sbjct: 63 YLQPIREHIASGKPFMGICVGLQSLFESSEEDPNIPGLGTIPARLRKFDAKTK-SVPHIG 121
Query: 169 WNALQITKDSEILDDVGDH---------HVYFVHSYRA--MPSDDNKE-WVSSTCNYGD- 215
WN+ T+ +D G Y+VHSY A P K+ W+ +T +YG+
Sbjct: 122 WNSATDTR----IDSTGGQTFYGLSPSSKYYYVHSYAAPYEPGILEKDGWLVATASYGEE 177
Query: 216 NFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFL-----HPKTNIPKKPTEGKALKLAKRV 270
FI ++ R N+ A QFHPEKSG GL LR FL H T + G+ L +R+
Sbjct: 178 KFIGAIARDNIFATQFHPEKSGQAGLRTLRAFLDGAQLHSVT-LEDSILTGEKNGLTRRI 236
Query: 271 IACLDVRANDKGDLVVTKGDQYDVREHTKEN---EVRNLGKPVELARQYYKEGADEISFL 327
IACLDVR ND GDLVVTKGDQYDVRE + +VRNLGKPV++A++YY++GADE++FL
Sbjct: 237 IACLDVRTNDVGDLVVTKGDQYDVREKDGADAGGQVRNLGKPVDMAKKYYEQGADEVTFL 296
Query: 328 NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387
NIT FR+ PL DLPML++LR TSE VFVPLT+GGGIRD D +G H +L+VAS YF+SG
Sbjct: 297 NITSFRNCPLADLPMLEILRRTSETVFVPLTIGGGIRDTVDTDGTHIPALDVASMYFKSG 356
Query: 388 ADKISIGSDAVYAAEDYLKTG-VKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVE 446
ADK+SIGSDAV AAEDY G V +GK+++E IS+ YGNQAVVVS+DP+RVY++ P D +
Sbjct: 357 ADKVSIGSDAVVAAEDYYAAGKVLSGKTAIETISKAYGNQAVVVSVDPKRVYVSQPEDTK 416
Query: 447 FKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506
+ + G+ + WYQCT+ GGRE R + +L +AVE +GAGEILLNCID DG
Sbjct: 417 HRTIETKFPNAAGQNFCWYQCTIKGGRETRDLDVCQLVQAVEAMGAGEILLNCIDKDGSN 476
Query: 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVK 566
GFD++LI + AV IPVIASSGAG +HF +VF +T AAL AG+FHR E + VK
Sbjct: 477 SGFDLELINHVKAAVKIPVIASSGAGMPKHFEEVFDQTTTDAALGAGMFHRGEYTVGEVK 536
Query: 567 EHLYKEGIEVR 577
++L G VR
Sbjct: 537 QYLEDRGFLVR 547
|
IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutamine amidotransferase domain provides the ammonia necessary to the cyclase domain to produce IGP and AICAR from PRFAR. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: - |
| >sp|P33734|HIS5_YEAST Imidazole glycerol phosphate synthase hisHF OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HIS7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 530 bits (1365), Expect = e-149, Method: Compositional matrix adjust.
Identities = 278/549 (50%), Positives = 365/549 (66%), Gaps = 21/549 (3%)
Query: 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED--ILNANRLIFPGVGAFAAAMDVLNK 106
VV ++D +GN++S+ NAI HLG+ ++ V++P+D I +RLI PGVG + +D L
Sbjct: 3 VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFN 62
Query: 107 TGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQ 166
G + + YIE +P +GIC+GLQ LF S E+ GL I + RFD S VP+
Sbjct: 63 RGFEKPIREYIESGKPIMGICVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEK-PVPE 121
Query: 167 IGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKE------WVSSTCNYG-DNFIA 219
IGWN+ I ++ YFVHS+ A+ + + K+ W + YG + FIA
Sbjct: 122 IGWNSC-IPSENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIA 180
Query: 220 SVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTN-IPKKPTEGKAL--------KLAKRV 270
+V + N+ A QFHPEKSG GL+V+ FL ++ IP E K L L +R+
Sbjct: 181 AVNKNNIFATQFHPEKSGKAGLNVIENFLKQQSPPIPNYSAEEKELLMNDYSNYGLTRRI 240
Query: 271 IACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNIT 330
IACLDVR ND+GDLVVTKGDQYDVRE + VRNLGKPV+LA++YY++GADE++FLNIT
Sbjct: 241 IACLDVRTNDQGDLVVTKGDQYDVREKSDGKGVRNLGKPVQLAQKYYQQGADEVTFLNIT 300
Query: 331 GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390
FRD PL D PML+VL+ ++ VFVPLTVGGGI+D D +G +LEVAS YFRSGADK
Sbjct: 301 SFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADK 360
Query: 391 ISIGSDAVYAAEDYLKTGVK-TGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKA 449
+SIG+DAVYAAE Y + G + G S +E IS+ YG QAVV+S+DP+RVY+ D + K
Sbjct: 361 VSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKV 420
Query: 450 VRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF 509
GPNGE+Y WYQCT+ GGRE R +G +EL +A E LGAGEILLNCID DG G+
Sbjct: 421 FETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSGY 480
Query: 510 DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569
D++LI+ + DAV IPVIASSGAG EHF + F KT A A L AG+FHR E + VKE+L
Sbjct: 481 DLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYL 540
Query: 570 YKEGIEVRI 578
+ G++VR+
Sbjct: 541 LEHGLKVRM 549
|
IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutamine amidotransferase domain provides the ammonia necessary to the cyclase domain to produce IGP and AICAR from PRFAR. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: - |
| >sp|A6UR05|HIS6_METVS Imidazole glycerol phosphate synthase subunit HisF OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=hisF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (507), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 176/313 (56%), Gaps = 42/313 (13%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
L KR+I CLD++ V KG + E+R+ G PVEL++ Y ++GADE+
Sbjct: 2 LTKRIIPCLDIKEGR-----VVKGTNF--------LELRDAGDPVELSKIYNEQGADELV 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT F D+ ++ V++ T+E VF+PLTVGGGI+ ++E R
Sbjct: 49 FLDITA--SFEKRDI-IIDVVKRTAEQVFIPLTVGGGIK-----------TVEDFRRILR 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
+GADKISI + AV E +++ S ++G Q VVV+ID +R YI ND
Sbjct: 95 AGADKISINTSAVKNPE------------LIKEASEIFGTQCVVVAIDVKRNYINDSNDK 142
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+ + NG+ W++ + GGREG I A AK VE+LGAGEILL +D DG
Sbjct: 143 NLSGKYIFE-SKNGK--FWFEVYIYGGREGTGIDAINWAKKVENLGAGEILLTSMDADGT 199
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D+ L K IS++V +PVIAS G G+ H +VF+ NA AAL A I H +E +Q +
Sbjct: 200 KDGYDITLTKAISESVKLPVIASGGCGSSAHVVEVFKNGNADAALMASILHYRETDVQKI 259
Query: 566 KEHLYKEGIEVRI 578
K+ + K I VRI
Sbjct: 260 KKEVQKNNIPVRI 272
|
IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) (taxid: 406327) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: - |
| >sp|A5UMZ1|HIS6_METS3 Imidazole glycerol phosphate synthase subunit HisF OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=hisF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 198 bits (504), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 175/313 (55%), Gaps = 40/313 (12%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
L KR+I CLD DL V +G V + + E++ G PV+LA +YY+ GADEI
Sbjct: 2 LTKRIIPCLDC------DLQVPEGR---VVKGVEFKEIKYAGNPVDLATRYYEMGADEIV 52
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
L+IT + M V+ +ENVF+P+ VGGGIR D Y+ + +
Sbjct: 53 ILDITASYERRA---TMADVIDRLTENVFIPICVGGGIRKVED-----YTKM------LK 98
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
+GADK S + A+ E L + S+V G+QAVVV ID +R Y+ +P+D
Sbjct: 99 AGADKCSTNTAAIKNPE------------LLTEASKVVGSQAVVVGIDAKRRYVDNPSDA 146
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
K V TD G Y W+ C++ GGRE + A E A ++LGAGEILL +D DG
Sbjct: 147 PDKNVVETDEG-----YCWFDCSIYGGREFTGMDAIEWAVKCQELGAGEILLTSMDGDGT 201
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
+G+D+ L K I+DA+ IPVIAS G G H DVF+KT+ SAALAA IFH + I V
Sbjct: 202 KEGYDIALNKAINDAIDIPVIASGGGGNPAHILDVFQKTDVSAALAASIFHFNQYSINDV 261
Query: 566 KEHLYKEGIEVRI 578
K++L + + VR+
Sbjct: 262 KQYLKENNVPVRL 274
|
IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) (taxid: 420247) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: - |
| >sp|A4G0J7|HIS6_METM5 Imidazole glycerol phosphate synthase subunit HisF OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=hisF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 172/315 (54%), Gaps = 46/315 (14%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
L KR+I CLD++ V KG + E+R+ G PVEL++ Y ++GADE+
Sbjct: 2 LTKRIIPCLDIKEGR-----VVKGTNF--------VELRDAGDPVELSKIYNEQGADELV 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT F D+ ++ V++ T+E VF+PLTVGGGI+ D + R
Sbjct: 49 FLDITA--SFEKRDI-IIDVVKRTAEQVFIPLTVGGGIKTVDDFR-----------KILR 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
+GADKISI + AV E +++ S ++G Q VVV++D +R YIT D
Sbjct: 95 AGADKISINTSAVKTPE------------LIKEASEIFGTQCVVVAMDVKRNYITDIQDE 142
Query: 446 EFKAVRV--TDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD 503
K V T+LG W++ + GGREG I A E AK VE+LGAGEILL +D D
Sbjct: 143 NLKDKNVFETELGS-----CWFEVYIYGGREGTGIDAIEWAKKVENLGAGEILLTSMDAD 197
Query: 504 GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQ 563
G G+D+ L K IS ++P+IAS G G +H D F+ A AAL A I H +E +
Sbjct: 198 GTKDGYDLVLTKSISKNTNLPIIASGGCGNSKHVVDAFKDGKADAALMASILHYRECTVN 257
Query: 564 SVKEHLYKEGIEVRI 578
+K+ + K I VR+
Sbjct: 258 DLKKEIEKNNISVRL 272
|
IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. Methanococcus maripaludis (strain C5 / ATCC BAA-1333) (taxid: 402880) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: - |
| >sp|O27398|HIS6_METTH Imidazole glycerol phosphate synthase subunit HisF OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=hisF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 172/313 (54%), Gaps = 40/313 (12%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR+I CLD DL V G V + + ++R G PVELA +YY++GADEI
Sbjct: 2 LAKRIIPCLDC------DLQVPNGR---VVKGVEFKQIRYAGDPVELATRYYEDGADEIV 52
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT + M V+ T+ENVFVP+ VGGGIR D ++ L +
Sbjct: 53 FLDITASHE---RRETMTHVIEATTENVFVPICVGGGIRKPED----YFKML-------K 98
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
+GADK S + A+ E + + S + G+QA VV+ID +R YI +P +
Sbjct: 99 AGADKCSTNTAAIKNPE------------LINEASDLVGSQACVVAIDAKRRYIENPRES 146
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+ + + D G Y WY+C++ GGRE I A + A +D GAGEILL +D DG
Sbjct: 147 DERFIIEVDDG-----YCWYECSIYGGREFTGIDAVKWAMECQDRGAGEILLTSMDRDGT 201
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D+ L + +S+ + IPVIAS G G EH + F A AALAA IFH E P+ +V
Sbjct: 202 KMGYDIPLTRTMSENLDIPVIASGGVGEPEHIYEAFTDGKADAALAASIFHFNEYPVPAV 261
Query: 566 KEHLYKEGIEVRI 578
KE+L G+ +R+
Sbjct: 262 KEYLRSRGVPIRL 274
|
IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: - |
| >sp|A6VHY8|HIS6_METM7 Imidazole glycerol phosphate synthase subunit HisF OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=hisF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (488), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 119/314 (37%), Positives = 172/314 (54%), Gaps = 46/314 (14%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
L KR+I CLD++ V KG + E+R+ G PVEL++ Y ++GADE+
Sbjct: 2 LTKRIIPCLDIKEGR-----VVKGTNF--------VELRDAGDPVELSKIYNEQGADELV 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT F D+ ++ V++ T+E VF+PLTVGGGI+ D + R
Sbjct: 49 FLDITA--SFEKRDI-IIDVVKRTAEQVFIPLTVGGGIKTVDDFR-----------KILR 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
+GADKISI + AV E +++ S ++G Q VVV++D +R YIT+P +
Sbjct: 95 AGADKISINTSAVKTPE------------LIKEASEIFGTQCVVVAMDVKRNYITNPQNE 142
Query: 446 EFKAVRV--TDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD 503
K + T LG W++ + GGREG I A + AK VE+LGAGEILL +D D
Sbjct: 143 NLKDKNIFETKLGS-----CWFEVYIYGGREGTGIDAIDWAKKVENLGAGEILLTSMDAD 197
Query: 504 GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQ 563
G G+D+ L + IS+ +P+IAS G G +H D F+ A AAL A I H +E +
Sbjct: 198 GTKDGYDLVLTRAISENTKLPIIASGGCGNSDHVVDAFKDGKADAALMASILHYRECTVN 257
Query: 564 SVKEHLYKEGIEVR 577
+K+ + K I VR
Sbjct: 258 DLKKEVEKNNIPVR 271
|
IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. Methanococcus maripaludis (strain C7 / ATCC BAA-1331) (taxid: 426368) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: - |
| >sp|Q2NI84|HIS6_METST Imidazole glycerol phosphate synthase subunit HisF OS=Methanosphaera stadtmanae (strain DSM 3091) GN=hisF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (487), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 171/313 (54%), Gaps = 40/313 (12%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
L+KR+I CLD DL V +G V + + ++R G PVELA +YY++GADEI
Sbjct: 2 LSKRIIPCLDC------DLQVPEGR---VVKGVEFKQIRYAGNPVELATKYYEQGADEIV 52
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT + M V+ T ENVF P+ VGGGIR+ D Y ++ +
Sbjct: 53 FLDITASHE---RRSTMADVIEKTVENVFTPICVGGGIREVKD-----YVAM------LK 98
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
+GADK S + A+ S + + S G+QA V+ ID +R Y+ +P++
Sbjct: 99 AGADKCSTNTAAI------------KDPSLINRASEHVGSQACVIGIDAKRRYVENPSES 146
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+ + T+ G Y W+ C++ GGRE I A + A E+ GAGEILL +D DG
Sbjct: 147 DEHYIVETNDG-----YCWFDCSIYGGREFTGIDAVKWAIECEERGAGEILLTSMDRDGT 201
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D++L K IS+ VSIPVIAS G G EH D F K A AALAA IFH E PI V
Sbjct: 202 KIGYDLELTKTISENVSIPVIASGGVGNPEHIYDSFSKGKADAALAASIFHFDEYPIPQV 261
Query: 566 KEHLYKEGIEVRI 578
K +L + I +RI
Sbjct: 262 KNYLKDKNIPIRI 274
|
IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. Methanosphaera stadtmanae (strain DSM 3091) (taxid: 339860) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 578 | ||||||
| 255578102 | 595 | imidazole glycerol phosphate synthase su | 0.960 | 0.932 | 0.873 | 0.0 | |
| 225460917 | 588 | PREDICTED: imidazole glycerol phosphate | 0.955 | 0.938 | 0.871 | 0.0 | |
| 356567330 | 580 | PREDICTED: imidazole glycerol phosphate | 0.942 | 0.939 | 0.879 | 0.0 | |
| 356567431 | 580 | PREDICTED: imidazole glycerol phosphate | 0.982 | 0.979 | 0.845 | 0.0 | |
| 449517677 | 593 | PREDICTED: imidazole glycerol phosphate | 0.961 | 0.937 | 0.863 | 0.0 | |
| 449444210 | 593 | PREDICTED: imidazole glycerol phosphate | 0.961 | 0.937 | 0.863 | 0.0 | |
| 224059636 | 584 | predicted protein [Populus trichocarpa] | 0.942 | 0.933 | 0.861 | 0.0 | |
| 15236905 | 592 | cyclase [Arabidopsis thaliana] gi|126438 | 0.946 | 0.923 | 0.848 | 0.0 | |
| 26452024 | 592 | putative glutamine amidotransferase/cycl | 0.946 | 0.923 | 0.846 | 0.0 | |
| 224104061 | 583 | predicted protein [Populus trichocarpa] | 0.955 | 0.946 | 0.837 | 0.0 |
| >gi|255578102|ref|XP_002529921.1| imidazole glycerol phosphate synthase subunit hisf, putative [Ricinus communis] gi|223530598|gb|EEF32475.1| imidazole glycerol phosphate synthase subunit hisf, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/561 (87%), Positives = 521/561 (92%), Gaps = 6/561 (1%)
Query: 22 NEFYKIQNRVKFKSPRALSIRATS-SDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP 80
N YK NR KFK PR LS+RA+S SDSVVTLLDYGAGNVRSVRNAIR+LGF IKDVQ+P
Sbjct: 37 NNLYK--NRSKFKPPRNLSVRASSTSDSVVTLLDYGAGNVRSVRNAIRYLGFQIKDVQSP 94
Query: 81 EDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEEN 140
DILNA RLIFPGVGAFA A+D LN TGMAEAL YIEKDRPFLGICLGLQLLF+SS+EN
Sbjct: 95 ADILNAKRLIFPGVGAFAPAIDFLNNTGMAEALSTYIEKDRPFLGICLGLQLLFESSDEN 154
Query: 141 GPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPS 200
GPV GLGLIPGVVGRFDSSNGFRVP IGWNALQI DSEILDD+G+HHVYFVHSYRAMPS
Sbjct: 155 GPVKGLGLIPGVVGRFDSSNGFRVPHIGWNALQIANDSEILDDIGNHHVYFVHSYRAMPS 214
Query: 201 DDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSG---DVGLSVLRRFLHPKTNIPKK 257
+NK+W+SSTCNYGDNFIASVRRGNVHAVQFHPEKSG DVGL+VLRRFL P +++ KK
Sbjct: 215 HENKDWISSTCNYGDNFIASVRRGNVHAVQFHPEKSGGYADVGLTVLRRFLLPMSSLTKK 274
Query: 258 PTEGKALKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYY 317
PTEGKA KLAKRVIACLDVR NDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELA QYY
Sbjct: 275 PTEGKASKLAKRVIACLDVRTNDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELAGQYY 334
Query: 318 KEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSL 377
K+GADE+SFLNIT FRDFPLGDLPMLQVLR TSENVFVPLTVGGGIRDFTDANGR+YSSL
Sbjct: 335 KDGADEVSFLNITAFRDFPLGDLPMLQVLRCTSENVFVPLTVGGGIRDFTDANGRYYSSL 394
Query: 378 EVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRV 437
EVASEYFRSGADKISIGSDAVYAAE+Y++T VKTGKSS+EQISRVYGNQAVVVSIDPRRV
Sbjct: 395 EVASEYFRSGADKISIGSDAVYAAEEYIRTKVKTGKSSIEQISRVYGNQAVVVSIDPRRV 454
Query: 438 YITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILL 497
Y+ P+DVEFKAVRVT GPNGEEYAWYQCTV+GGREGRPIGAYELAKAVE+LGAGEILL
Sbjct: 455 YLKSPSDVEFKAVRVTKPGPNGEEYAWYQCTVSGGREGRPIGAYELAKAVEELGAGEILL 514
Query: 498 NCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557
NCIDCDGQGKGFD+DLI+LISDAVSIPVIASSGAGA EHF++VF KTNASAALAAGIFHR
Sbjct: 515 NCIDCDGQGKGFDIDLIQLISDAVSIPVIASSGAGAAEHFTEVFNKTNASAALAAGIFHR 574
Query: 558 KEVPIQSVKEHLYKEGIEVRI 578
KEVPIQSVKEHL KEGIEVRI
Sbjct: 575 KEVPIQSVKEHLLKEGIEVRI 595
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460917|ref|XP_002279105.1| PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic [Vitis vinifera] gi|297737461|emb|CBI26662.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 998 bits (2580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/562 (87%), Positives = 521/562 (92%), Gaps = 10/562 (1%)
Query: 18 FTRTNEFYKIQNRVKFKSPRALSIRAT-SSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKD 76
F RTN +KFKS R LSIR + ++D+VVTLLDYGAGNVRSVRNAIR LGF IKD
Sbjct: 36 FHRTN--------LKFKS-RTLSIRCSGATDNVVTLLDYGAGNVRSVRNAIRFLGFDIKD 86
Query: 77 VQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136
VQTPEDILNAN LIFPGVGAFAAAMDVLNK GMAEALC YIE DRPFLGICLGLQLLF+S
Sbjct: 87 VQTPEDILNANCLIFPGVGAFAAAMDVLNKKGMAEALCTYIENDRPFLGICLGLQLLFES 146
Query: 137 SEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYR 196
SEENGPV GLGLIPGVVGRFDS+NGFRVP IGWNAL KDSEILDD+G HVYFVHSYR
Sbjct: 147 SEENGPVRGLGLIPGVVGRFDSTNGFRVPHIGWNALHTVKDSEILDDIGKRHVYFVHSYR 206
Query: 197 AMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPK 256
AMPS+DNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLS+LRRFL+PK++ K
Sbjct: 207 AMPSNDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSILRRFLYPKSSTTK 266
Query: 257 KPTEGKALKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQY 316
KP EG+A KLAKRVIACLDVR NDKGDLVVTKGDQYDVRE+T ENEVRNLGKPVELA QY
Sbjct: 267 KPGEGRASKLAKRVIACLDVRTNDKGDLVVTKGDQYDVRENTGENEVRNLGKPVELAGQY 326
Query: 317 YKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSS 376
Y +GADE+SFLNITGFRDFPLGDLPML+VLR TSENVFVPLTVGGGIRDFTDANGR+YSS
Sbjct: 327 YIDGADEVSFLNITGFRDFPLGDLPMLEVLRYTSENVFVPLTVGGGIRDFTDANGRYYSS 386
Query: 377 LEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRR 436
LEVASEYFRSGADKISIGSDAVYAAE+Y++TGVKTGK+SLEQISRVYGNQAVVVSIDPRR
Sbjct: 387 LEVASEYFRSGADKISIGSDAVYAAEEYIRTGVKTGKTSLEQISRVYGNQAVVVSIDPRR 446
Query: 437 VYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEIL 496
VYI P+DVEFKAVRVT+ GPNGEEYAWYQCTVNGGREGRPIGAYELAKAVE+LGAGEIL
Sbjct: 447 VYINAPDDVEFKAVRVTNPGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEIL 506
Query: 497 LNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556
LNCIDCDGQGKGFD+DLIKLISDAVSIPVIASSGAG VEHFS+VF+KTNASAALAAGIFH
Sbjct: 507 LNCIDCDGQGKGFDIDLIKLISDAVSIPVIASSGAGVVEHFSEVFKKTNASAALAAGIFH 566
Query: 557 RKEVPIQSVKEHLYKEGIEVRI 578
RKEVPIQSVKEHL + GIEVR+
Sbjct: 567 RKEVPIQSVKEHLLETGIEVRM 588
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567330|ref|XP_003551874.1| PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/546 (87%), Positives = 515/546 (94%), Gaps = 1/546 (0%)
Query: 34 KSPRALSIRATSS-DSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFP 92
K ++ S+RA+SS DSVVTLLDYGAGNVRSVRNAIR LGF IKDVQTP+DILNA+RL+FP
Sbjct: 35 KPSKSFSVRASSSRDSVVTLLDYGAGNVRSVRNAIRFLGFEIKDVQTPQDILNASRLVFP 94
Query: 93 GVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGV 152
GVGAFAAAM+VL+KTGM EALC+YI+KDRPFLGICLGLQLLF+SSEENGPV GLGLIPG
Sbjct: 95 GVGAFAAAMEVLSKTGMDEALCSYIDKDRPFLGICLGLQLLFESSEENGPVKGLGLIPGT 154
Query: 153 VGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCN 212
VGRFDSSNGFRVP IGWNALQIT+DS ILDDVG+HHVYFVHSYRAMPSDDN EW+SSTC+
Sbjct: 155 VGRFDSSNGFRVPHIGWNALQITEDSGILDDVGNHHVYFVHSYRAMPSDDNNEWISSTCD 214
Query: 213 YGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPTEGKALKLAKRVIA 272
YGD FIAS+RRGNVHAVQFHPEKSGDVGLS+L RFL+PK+N+ KKP EGKA KLAKRVIA
Sbjct: 215 YGDKFIASIRRGNVHAVQFHPEKSGDVGLSILGRFLNPKSNMAKKPGEGKASKLAKRVIA 274
Query: 273 CLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGF 332
CLDVR NDKGDLVVTKGDQYDVREHTKENEVRNLGKPV+LA QYYK+GADE+SFLNITGF
Sbjct: 275 CLDVRTNDKGDLVVTKGDQYDVREHTKENEVRNLGKPVDLAGQYYKDGADEVSFLNITGF 334
Query: 333 RDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKIS 392
RDFPLGDLPMLQVLR TSENVFVPLTVGGGIRDFTD+ GR+YSSLEVASEYFRSGADKIS
Sbjct: 335 RDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFTDSTGRYYSSLEVASEYFRSGADKIS 394
Query: 393 IGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRV 452
IGSDAVYAAE+YLKTGVKTGK+SLEQISRVYGNQAVVVSIDPRRVY+ PNDV+ K +RV
Sbjct: 395 IGSDAVYAAEEYLKTGVKTGKTSLEQISRVYGNQAVVVSIDPRRVYVKDPNDVQLKTIRV 454
Query: 453 TDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMD 512
+ G NGEEYAWYQCTVNGGREGRPIGAYELAKAVE+LGAGEILLNCIDCDGQGKGFD+D
Sbjct: 455 SSPGSNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDVD 514
Query: 513 LIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572
LIKLISDAVSIPVIASSGAGA EHFS+VF KTNASAALAAGIFHRKEVPIQSVKEHL KE
Sbjct: 515 LIKLISDAVSIPVIASSGAGAPEHFSEVFYKTNASAALAAGIFHRKEVPIQSVKEHLLKE 574
Query: 573 GIEVRI 578
GIEVRI
Sbjct: 575 GIEVRI 580
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567431|ref|XP_003551923.1| PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2563), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/571 (84%), Positives = 523/571 (91%), Gaps = 3/571 (0%)
Query: 11 SSTSSLLFTRTNEFYK--IQNRVKFKSPRALSIRATSS-DSVVTLLDYGAGNVRSVRNAI 67
+STSSL R I + K ++ S+ A+SS DSVVTLLDYGAGNVRSVRNAI
Sbjct: 10 ASTSSLFSLRNKPLSSPTITHLGNTKPSKSFSVGASSSRDSVVTLLDYGAGNVRSVRNAI 69
Query: 68 RHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127
R LGF IKDVQTP+DILNA+RL+FPGVGAFAAAM+VL+KTGM EALC+YI+KDRPFLGIC
Sbjct: 70 RFLGFDIKDVQTPQDILNASRLVFPGVGAFAAAMEVLSKTGMDEALCSYIDKDRPFLGIC 129
Query: 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDH 187
LGLQLLF+SSEENGPV GLGLIPG VGRFDSSNGFRVP IGWNALQIT+DS ILDDVG+H
Sbjct: 130 LGLQLLFESSEENGPVKGLGLIPGTVGRFDSSNGFRVPHIGWNALQITEDSGILDDVGNH 189
Query: 188 HVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRF 247
HVYFVHSYRAMPSDDN EW+SSTC+YGD FIAS+RRGNV+AVQFHPEKSGDVGLS+L RF
Sbjct: 190 HVYFVHSYRAMPSDDNNEWISSTCDYGDKFIASIRRGNVNAVQFHPEKSGDVGLSILGRF 249
Query: 248 LHPKTNIPKKPTEGKALKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLG 307
L+PK+N+ KKP EGKA KLAKRVIACLDVR NDKGDLVVTKGDQYDVREHTKENEVRNLG
Sbjct: 250 LNPKSNMAKKPGEGKASKLAKRVIACLDVRTNDKGDLVVTKGDQYDVREHTKENEVRNLG 309
Query: 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFT 367
KPV+LA QYYK+GADE+SFLNITGFRDFPLGDLPMLQ+LR TSENVFVPLTVGGGIRDFT
Sbjct: 310 KPVDLAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQILRYTSENVFVPLTVGGGIRDFT 369
Query: 368 DANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQA 427
D+ GR+YSSLEVASEYFRSGADKISIGSDAVYAAE+YLK GVKTGK+SLEQISRVYGNQA
Sbjct: 370 DSTGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYLKAGVKTGKTSLEQISRVYGNQA 429
Query: 428 VVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAV 487
VVVSIDPRRVY+ PND++ K +RV+ GPNGEEYAWYQCTVNGGREGRPIGAYELAKAV
Sbjct: 430 VVVSIDPRRVYVKDPNDLQLKTIRVSSPGPNGEEYAWYQCTVNGGREGRPIGAYELAKAV 489
Query: 488 EDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNAS 547
E+LGAGEILLNCIDCDGQGKGFD+DLIKLISDAVSIPVIASSGAGA EHFS+VF KTNAS
Sbjct: 490 EELGAGEILLNCIDCDGQGKGFDVDLIKLISDAVSIPVIASSGAGAPEHFSEVFYKTNAS 549
Query: 548 AALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578
AALAAGIFHRKEVPIQSVKEHL KEGIEVRI
Sbjct: 550 AALAAGIFHRKEVPIQSVKEHLLKEGIEVRI 580
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449517677|ref|XP_004165871.1| PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2563), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/558 (86%), Positives = 513/558 (91%), Gaps = 2/558 (0%)
Query: 22 NEFYKIQNRVKFKSPRALSIRAT-SSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP 80
N YK N +K KS ++RA+ SDSVVTLLDYGAGNVRSVRNAIR+LGF IKDVQTP
Sbjct: 37 NNRYKTHN-LKVKSSGKFAVRASFGSDSVVTLLDYGAGNVRSVRNAIRYLGFEIKDVQTP 95
Query: 81 EDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEEN 140
EDILNA RLIFPGVGAFA AMDVLN GMAEALC YIE DRPFLGICLGLQLLF+SSEEN
Sbjct: 96 EDILNAKRLIFPGVGAFAPAMDVLNSKGMAEALCTYIENDRPFLGICLGLQLLFESSEEN 155
Query: 141 GPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPS 200
GPV GLGLIPGVVGRFDSSNGFRVP IGWNAL+I++DSEILD++ + HVYFVHSYRAMPS
Sbjct: 156 GPVKGLGLIPGVVGRFDSSNGFRVPHIGWNALEISEDSEILDEISNRHVYFVHSYRAMPS 215
Query: 201 DDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPTE 260
D NK+W+SSTC+YGD FIASVRRGNVHAVQFHPEKSGDVGLSVLRRFL PK+ I KKPTE
Sbjct: 216 DKNKDWISSTCSYGDKFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLFPKSTITKKPTE 275
Query: 261 GKALKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEG 320
GKA +LAKRVIACLDVRAND+GDLVVTKGDQYDVRE T+ENEVRNLGKPVELA QYYK+G
Sbjct: 276 GKASRLAKRVIACLDVRANDQGDLVVTKGDQYDVREQTEENEVRNLGKPVELAGQYYKDG 335
Query: 321 ADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVA 380
ADE+SFLNITGFRDFPLGDLPMLQVLR TSENVFVPLTVGGGIRDF DANGRHYSSLEVA
Sbjct: 336 ADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFKDANGRHYSSLEVA 395
Query: 381 SEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYIT 440
SEYFRSGADKISIGSDAVYAAE+YL+TGVKTG SSLEQIS+VYGNQAVVVSIDPRRVY+
Sbjct: 396 SEYFRSGADKISIGSDAVYAAEEYLRTGVKTGNSSLEQISKVYGNQAVVVSIDPRRVYLK 455
Query: 441 HPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI 500
NDVEFK +RVT+ GPNGEEYAWYQCTVNGGREGRPIGAYELAKAVE+LGAGEILLNCI
Sbjct: 456 SSNDVEFKVIRVTNPGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCI 515
Query: 501 DCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEV 560
DCDGQGKGFD DL+KLISD+VSIPVIASSGAG+ HFSDVF KTNASAALAAGIFHR EV
Sbjct: 516 DCDGQGKGFDTDLVKLISDSVSIPVIASSGAGSPHHFSDVFNKTNASAALAAGIFHRNEV 575
Query: 561 PIQSVKEHLYKEGIEVRI 578
PIQSVKEHL KEGIEVRI
Sbjct: 576 PIQSVKEHLLKEGIEVRI 593
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444210|ref|XP_004139868.1| PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 989 bits (2557), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/558 (86%), Positives = 513/558 (91%), Gaps = 2/558 (0%)
Query: 22 NEFYKIQNRVKFKSPRALSIRATS-SDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP 80
N YK N +K KS ++RA+S S SVVTLLDYGAGNVRSVRNAIR+LGF IKDVQTP
Sbjct: 37 NNRYKTHN-LKVKSSGKFAVRASSLSLSVVTLLDYGAGNVRSVRNAIRYLGFEIKDVQTP 95
Query: 81 EDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEEN 140
EDILNA RLIFPGVGAFA AMDVLN GMAEALC YIE DRPFLGICLGLQLLF+SSEEN
Sbjct: 96 EDILNAKRLIFPGVGAFAPAMDVLNSKGMAEALCTYIENDRPFLGICLGLQLLFESSEEN 155
Query: 141 GPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPS 200
GPV GLGLIPGVVGRFDSSNGFRVP IGWNAL+I++DSEILD++ + HVYFVHSYRAMPS
Sbjct: 156 GPVKGLGLIPGVVGRFDSSNGFRVPHIGWNALEISEDSEILDEISNRHVYFVHSYRAMPS 215
Query: 201 DDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPTE 260
D NK+W+SSTC+YGD FIASVRRGNVHAVQFHPEKSGDVGLSVLRRFL PK+ I KKPTE
Sbjct: 216 DKNKDWISSTCSYGDKFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLFPKSTITKKPTE 275
Query: 261 GKALKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEG 320
GKA +LAKRVIACLDVRAND+GDLVVTKGDQYDVRE T+ENEVRNLGKPVELA QYYK+G
Sbjct: 276 GKASRLAKRVIACLDVRANDQGDLVVTKGDQYDVREQTEENEVRNLGKPVELAGQYYKDG 335
Query: 321 ADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVA 380
ADE+SFLNITGFRDFPLGDLPMLQVLR TSENVFVPLTVGGGIRDF DANGRHYSSLEVA
Sbjct: 336 ADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFKDANGRHYSSLEVA 395
Query: 381 SEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYIT 440
SEYFRSGADKISIGSDAVYAAE+YL+TGVKTG SSLEQIS+VYGNQAVVVSIDPRRVY+
Sbjct: 396 SEYFRSGADKISIGSDAVYAAEEYLRTGVKTGNSSLEQISKVYGNQAVVVSIDPRRVYLK 455
Query: 441 HPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI 500
NDVEFK +RVT+ GPNGEEYAWYQCTVNGGREGRPIGAYELAKAVE+LGAGEILLNCI
Sbjct: 456 SSNDVEFKVIRVTNPGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCI 515
Query: 501 DCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEV 560
DCDGQGKGFD DL+KLISD+VSIPVIASSGAG+ HFSDVF KTNASAALAAGIFHR EV
Sbjct: 516 DCDGQGKGFDTDLVKLISDSVSIPVIASSGAGSPHHFSDVFNKTNASAALAAGIFHRNEV 575
Query: 561 PIQSVKEHLYKEGIEVRI 578
PIQSVKEHL KEGIEVRI
Sbjct: 576 PIQSVKEHLLKEGIEVRI 593
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059636|ref|XP_002299945.1| predicted protein [Populus trichocarpa] gi|222847203|gb|EEE84750.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/547 (86%), Positives = 513/547 (93%), Gaps = 2/547 (0%)
Query: 32 KFKSPRALSIRATSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIF 91
KFKSPR LS+RA++ DSVVTLLDYGAGNVRSVRNAIRHLGF IKDVQTP+DILNA RLIF
Sbjct: 40 KFKSPRNLSVRASNDDSVVTLLDYGAGNVRSVRNAIRHLGFQIKDVQTPKDILNARRLIF 99
Query: 92 PGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPG 151
PGVGAFA AMDVLN TGM EALC YI+ DRPFLGICLGLQLLF+SSEENGPV GLGLIPG
Sbjct: 100 PGVGAFAPAMDVLNNTGMGEALCTYIQNDRPFLGICLGLQLLFESSEENGPVGGLGLIPG 159
Query: 152 VVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTC 211
VVGRFDSSNGFRVP IGWNALQITKDSEILDD+G+ HVYFVHSYRAMPS++NKEW+SSTC
Sbjct: 160 VVGRFDSSNGFRVPHIGWNALQITKDSEILDDIGNRHVYFVHSYRAMPSNENKEWISSTC 219
Query: 212 NYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPTEGKALKLAKRVI 271
NYGD FIASVR+G VHAVQFHPEK +VGLSVLR FL PK+++ +K TE KA KLAKRVI
Sbjct: 220 NYGDEFIASVRKGKVHAVQFHPEK--NVGLSVLRSFLLPKSSLTEKRTERKASKLAKRVI 277
Query: 272 ACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITG 331
ACLDVR ND+GDLVVTKGDQY+VREH ++NEVRNLGKPVELA +YY++GADE+SFLNITG
Sbjct: 278 ACLDVRTNDEGDLVVTKGDQYNVREHAEKNEVRNLGKPVELAGKYYEDGADEVSFLNITG 337
Query: 332 FRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKI 391
FRDFPLGDLPMLQVLR SENVFVPLTVGGGIRDFTD+N R+YSSLEVASEYFRSGADKI
Sbjct: 338 FRDFPLGDLPMLQVLRCASENVFVPLTVGGGIRDFTDSNDRYYSSLEVASEYFRSGADKI 397
Query: 392 SIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVR 451
SIGSDAV+AAE+YLKT VKTGKSS+EQISRVYGNQAVVVSIDPRRVY+ P+DVEFK++R
Sbjct: 398 SIGSDAVHAAEEYLKTKVKTGKSSIEQISRVYGNQAVVVSIDPRRVYLNDPSDVEFKSIR 457
Query: 452 VTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDM 511
+T+ GPNGEEYAWYQCT+NGGREGRPIGAYELAKAVE+LGAGEILLNCIDCDGQGKGFD+
Sbjct: 458 LTNPGPNGEEYAWYQCTINGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDI 517
Query: 512 DLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571
DLIK+ISDAV+IPVIASSGAGAVEHFSDVF KTNASAALAAGIFHRKEVPI+SVKEHL K
Sbjct: 518 DLIKMISDAVNIPVIASSGAGAVEHFSDVFSKTNASAALAAGIFHRKEVPIRSVKEHLLK 577
Query: 572 EGIEVRI 578
EGIEVRI
Sbjct: 578 EGIEVRI 584
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236905|ref|NP_194420.1| cyclase [Arabidopsis thaliana] gi|12643854|sp|Q9SZ30.1|HIS5_ARATH RecName: Full=Imidazole glycerol phosphate synthase hisHF, chloroplastic; Short=IGP synthase; Short=IGPS; Short=ImGP synthase; Includes: RecName: Full=Glutamine amidotransferase; Includes: RecName: Full=Cyclase; Flags: Precursor gi|4455213|emb|CAB36536.1| glutamine amidotransferase/cyclase [Arabidopsis thaliana] gi|7269543|emb|CAB79545.1| glutamine amidotransferase/cyclase [Arabidopsis thaliana] gi|332659866|gb|AEE85266.1| cyclase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 975 bits (2520), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/548 (84%), Positives = 513/548 (93%), Gaps = 1/548 (0%)
Query: 32 KFKSPRALSIRATS-SDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLI 90
KFKSPR+LS+RA+S SDSVVTLLDYGAGNVRS+RNA+RHLGF IKDVQTP DILNA+RLI
Sbjct: 45 KFKSPRSLSVRASSTSDSVVTLLDYGAGNVRSIRNALRHLGFSIKDVQTPGDILNADRLI 104
Query: 91 FPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIP 150
FPGVGAFA AMDVLN+TGMAEALC YIE DRPFLGICLGLQLLF SSEENGPV GLG+IP
Sbjct: 105 FPGVGAFAPAMDVLNRTGMAEALCKYIENDRPFLGICLGLQLLFDSSEENGPVKGLGVIP 164
Query: 151 GVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSST 210
G+VGRFD+S G RVP IGWNALQ+ KDSEILDDVG+ HVYFVHSYRA+PSD+NK+W+SST
Sbjct: 165 GIVGRFDASAGIRVPHIGWNALQVGKDSEILDDVGNRHVYFVHSYRAIPSDENKDWISST 224
Query: 211 CNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPTEGKALKLAKRV 270
CNYG++FI+S+RRGNVHAVQFHPEKSG+VGLSVLRRFLHPK +KP EGKA KLAKRV
Sbjct: 225 CNYGESFISSIRRGNVHAVQFHPEKSGEVGLSVLRRFLHPKLPATQKPMEGKASKLAKRV 284
Query: 271 IACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNIT 330
IACLDVR NDKGDLVVTKGDQYDVRE + ENEVRNLGKPV+LA QYYK+GADEISFLNIT
Sbjct: 285 IACLDVRTNDKGDLVVTKGDQYDVREQSNENEVRNLGKPVDLAGQYYKDGADEISFLNIT 344
Query: 331 GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390
GFRDFPLGDLPM+QVLR TS+NVFVPLTVGGGIRDFTDA+GR+YSSLEVA+EYFRSGADK
Sbjct: 345 GFRDFPLGDLPMIQVLRQTSKNVFVPLTVGGGIRDFTDASGRYYSSLEVAAEYFRSGADK 404
Query: 391 ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAV 450
ISIGSDAV AAE+++K+GVKTGKSSLEQISRVYGNQAVVVSIDPRRVY+ HP+DV +K +
Sbjct: 405 ISIGSDAVSAAEEFIKSGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYVNHPDDVPYKVI 464
Query: 451 RVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFD 510
RVT+ GPNGEEYAWYQCTV+GGREGRPIGA+ELAKAVE+LGAGEILLNCIDCDGQGKGFD
Sbjct: 465 RVTNPGPNGEEYAWYQCTVSGGREGRPIGAFELAKAVEELGAGEILLNCIDCDGQGKGFD 524
Query: 511 MDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570
+DL+KLISD+V IPVIASSGAG +HFS+VF KTNASAALAAGIFHRKEVPIQSVKEHL
Sbjct: 525 IDLVKLISDSVGIPVIASSGAGTPDHFSEVFEKTNASAALAAGIFHRKEVPIQSVKEHLQ 584
Query: 571 KEGIEVRI 578
+E IEVRI
Sbjct: 585 EERIEVRI 592
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|26452024|dbj|BAC43102.1| putative glutamine amidotransferase/cyclase [Arabidopsis thaliana] gi|29028958|gb|AAO64858.1| At4g26900 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 970 bits (2507), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/548 (84%), Positives = 512/548 (93%), Gaps = 1/548 (0%)
Query: 32 KFKSPRALSIRATS-SDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLI 90
KFKSPR+LS+RA+S SDSVVTLLDYGAGNVRS+RNA+RHLGF IKDVQTP DILNA+RLI
Sbjct: 45 KFKSPRSLSVRASSTSDSVVTLLDYGAGNVRSIRNALRHLGFSIKDVQTPGDILNADRLI 104
Query: 91 FPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIP 150
FPGVGAFA AMDVLN+TGMAEALC YIE DRPFLGICLGLQLLF SSEENGPV GLG+IP
Sbjct: 105 FPGVGAFAPAMDVLNRTGMAEALCKYIENDRPFLGICLGLQLLFDSSEENGPVKGLGVIP 164
Query: 151 GVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSST 210
G+VGRFD+S G RVP IGWNALQ+ KDSEILDDVG+ HVYFVHSYRA+PSD+NK+W+SST
Sbjct: 165 GIVGRFDASAGIRVPHIGWNALQVGKDSEILDDVGNRHVYFVHSYRAIPSDENKDWISST 224
Query: 211 CNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPTEGKALKLAKRV 270
CNYG++FI+S+RRGNVHAVQFHPEKSG+VGLSVLRRFLHPK +KP EGKA KLAKRV
Sbjct: 225 CNYGESFISSIRRGNVHAVQFHPEKSGEVGLSVLRRFLHPKLPATQKPMEGKASKLAKRV 284
Query: 271 IACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNIT 330
IACLDVR NDKGDLVVTKGDQYDVRE + ENEVRNLGKPV+LA QYYK+GADEISFLNIT
Sbjct: 285 IACLDVRTNDKGDLVVTKGDQYDVREQSNENEVRNLGKPVDLAGQYYKDGADEISFLNIT 344
Query: 331 GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390
GFRDFPLGDLPM+QVLR TS+NVFVPLTVGGGIRDFTDA+GR+YSSLEVA+EYFRSGADK
Sbjct: 345 GFRDFPLGDLPMIQVLRQTSKNVFVPLTVGGGIRDFTDASGRYYSSLEVAAEYFRSGADK 404
Query: 391 ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAV 450
ISIGSDAV AAE+++K+GVKTGKSSLEQISRVYGNQAVVVSIDPRRVY+ HP+DV +K +
Sbjct: 405 ISIGSDAVSAAEEFIKSGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYVNHPDDVPYKVI 464
Query: 451 RVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFD 510
RVT+ GPNGEEYA YQCTV+GGREGRPIGA+ELAKAVE+LGAGEILLNCIDCDGQGKGFD
Sbjct: 465 RVTNPGPNGEEYARYQCTVSGGREGRPIGAFELAKAVEELGAGEILLNCIDCDGQGKGFD 524
Query: 511 MDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570
+DL+KLISD+V IPVIASSGAG +HFS+VF KTNASAALAAGIFHRKEVPIQSVKEHL
Sbjct: 525 IDLVKLISDSVGIPVIASSGAGTPDHFSEVFEKTNASAALAAGIFHRKEVPIQSVKEHLQ 584
Query: 571 KEGIEVRI 578
+E IEVRI
Sbjct: 585 EERIEVRI 592
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224104061|ref|XP_002313301.1| predicted protein [Populus trichocarpa] gi|222849709|gb|EEE87256.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/554 (83%), Positives = 509/554 (91%), Gaps = 2/554 (0%)
Query: 25 YKIQNRVKFKSPRALSIRATSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDIL 84
Y+ + KFKS R LS+RA++ DSVVTLLDYGAGNVRSVRNAI HLGF IKDVQTP+DIL
Sbjct: 32 YRNHSPFKFKSRRNLSVRASNDDSVVTLLDYGAGNVRSVRNAILHLGFQIKDVQTPKDIL 91
Query: 85 NANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVN 144
NA RLIFPGVGAFA AMDVLN TGM EALC+YI+ DRPFLGICLGLQLLF+SS+ENGPV
Sbjct: 92 NARRLIFPGVGAFAPAMDVLNNTGMGEALCSYIQNDRPFLGICLGLQLLFESSDENGPVG 151
Query: 145 GLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNK 204
GLG+IPGVVGRFDSS+GFRVP IGWNALQITKDSEILDD+G+ HVYFVHSYRAMPS++NK
Sbjct: 152 GLGMIPGVVGRFDSSHGFRVPHIGWNALQITKDSEILDDIGNRHVYFVHSYRAMPSNENK 211
Query: 205 EWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPTEGKAL 264
EW+SSTCNYGD FIASVRRGNVHAVQFHPEK +VGLSVLRRFL PK+++ K TEGKA
Sbjct: 212 EWISSTCNYGDEFIASVRRGNVHAVQFHPEK--NVGLSVLRRFLLPKSSLTGKRTEGKAS 269
Query: 265 KLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEI 324
KLAKRVIACLDVRAND+GDLVVTKGDQYDVREH +++VRNLGKPVELA QYY +GADE+
Sbjct: 270 KLAKRVIACLDVRANDEGDLVVTKGDQYDVREHADQSKVRNLGKPVELAGQYYSDGADEV 329
Query: 325 SFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384
SFLNITGFRDFPLGD+PMLQVLR SENVFVPLTVGGGIRDFTD NGR+YSSLEVASEYF
Sbjct: 330 SFLNITGFRDFPLGDVPMLQVLRRASENVFVPLTVGGGIRDFTDLNGRYYSSLEVASEYF 389
Query: 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPND 444
RSGADKISIGSDAV+AAE+YLKT VKTGKSS+EQISRVYGNQAVVVSIDPRRVY+ P+D
Sbjct: 390 RSGADKISIGSDAVHAAEEYLKTKVKTGKSSIEQISRVYGNQAVVVSIDPRRVYLNDPSD 449
Query: 445 VEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG 504
VEFK++++T+ G YAWYQCT+NGGREGRPIGAYELAKAVE+LGAGEILLNCIDCDG
Sbjct: 450 VEFKSIKLTNPGKENFLYAWYQCTINGGREGRPIGAYELAKAVEELGAGEILLNCIDCDG 509
Query: 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQS 564
QGKGFD+DL+K+ISDAVSIPVIASSGAG EHFSDVF KTNASAALAAGIFHRKEVP+QS
Sbjct: 510 QGKGFDIDLVKMISDAVSIPVIASSGAGVSEHFSDVFSKTNASAALAAGIFHRKEVPVQS 569
Query: 565 VKEHLYKEGIEVRI 578
VKEHL KEGIEVRI
Sbjct: 570 VKEHLLKEGIEVRI 583
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 578 | ||||||
| TAIR|locus:2116422 | 592 | AT-HF "HIS HF" [Arabidopsis th | 0.949 | 0.927 | 0.847 | 2.5e-255 | |
| POMBASE|SPBC418.01c | 541 | his4 "imidazoleglycerol-phosph | 0.906 | 0.968 | 0.520 | 8.6e-143 | |
| SGD|S000000452 | 552 | HIS7 "Imidazole glycerol phosp | 0.913 | 0.956 | 0.506 | 8.3e-138 | |
| ASPGD|ASPL0000068850 | 553 | hisHF [Emericella nidulans (ta | 0.911 | 0.952 | 0.499 | 3.8e-133 | |
| UNIPROTKB|G4NDI4 | 555 | MGG_00253 "Imidazole glycerol | 0.690 | 0.718 | 0.576 | 7.9e-117 | |
| CGD|CAL0006063 | 627 | HIS7 [Candida albicans (taxid: | 0.480 | 0.443 | 0.554 | 6.4e-106 | |
| UNIPROTKB|O53908 | 267 | hisF "Imidazole glycerol phosp | 0.216 | 0.468 | 0.456 | 6.4e-40 | |
| TIGR_CMR|GSU_3095 | 253 | GSU_3095 "imidazoleglycerol ph | 0.202 | 0.462 | 0.508 | 1.2e-39 | |
| TIGR_CMR|GSU_3097 | 209 | GSU_3097 "imidazole glycerol p | 0.339 | 0.937 | 0.421 | 1.6e-38 | |
| TIGR_CMR|BA_1428 | 209 | BA_1428 "imidazole glycerol ph | 0.335 | 0.928 | 0.395 | 6.8e-36 |
| TAIR|locus:2116422 AT-HF "HIS HF" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2458 (870.3 bits), Expect = 2.5e-255, P = 2.5e-255
Identities = 467/551 (84%), Positives = 515/551 (93%)
Query: 29 NRVKFKSPRALSIRATS-SDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNAN 87
NR KFKSPR+LS+RA+S SDSVVTLLDYGAGNVRS+RNA+RHLGF IKDVQTP DILNA+
Sbjct: 43 NR-KFKSPRSLSVRASSTSDSVVTLLDYGAGNVRSIRNALRHLGFSIKDVQTPGDILNAD 101
Query: 88 RLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLG 147
RLIFPGVGAFA AMDVLN+TGMAEALC YIE DRPFLGICLGLQLLF SSEENGPV GLG
Sbjct: 102 RLIFPGVGAFAPAMDVLNRTGMAEALCKYIENDRPFLGICLGLQLLFDSSEENGPVKGLG 161
Query: 148 LIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWV 207
+IPG+VGRFD+S G RVP IGWNALQ+ KDSEILDDVG+ HVYFVHSYRA+PSD+NK+W+
Sbjct: 162 VIPGIVGRFDASAGIRVPHIGWNALQVGKDSEILDDVGNRHVYFVHSYRAIPSDENKDWI 221
Query: 208 SSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPTEGKALKLA 267
SSTCNYG++FI+S+RRGNVHAVQFHPEKSG+VGLSVLRRFLHPK +KP EGKA KLA
Sbjct: 222 SSTCNYGESFISSIRRGNVHAVQFHPEKSGEVGLSVLRRFLHPKLPATQKPMEGKASKLA 281
Query: 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFL 327
KRVIACLDVR NDKGDLVVTKGDQYDVRE + ENEVRNLGKPV+LA QYYK+GADEISFL
Sbjct: 282 KRVIACLDVRTNDKGDLVVTKGDQYDVREQSNENEVRNLGKPVDLAGQYYKDGADEISFL 341
Query: 328 NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387
NITGFRDFPLGDLPM+QVLR TS+NVFVPLTVGGGIRDFTDA+GR+YSSLEVA+EYFRSG
Sbjct: 342 NITGFRDFPLGDLPMIQVLRQTSKNVFVPLTVGGGIRDFTDASGRYYSSLEVAAEYFRSG 401
Query: 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEF 447
ADKISIGSDAV AAE+++K+GVKTGKSSLEQISRVYGNQAVVVSIDPRRVY+ HP+DV +
Sbjct: 402 ADKISIGSDAVSAAEEFIKSGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYVNHPDDVPY 461
Query: 448 KAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK 507
K +RVT+ GPNGEEYAWYQCTV+GGREGRPIGA+ELAKAVE+LGAGEILLNCIDCDGQGK
Sbjct: 462 KVIRVTNPGPNGEEYAWYQCTVSGGREGRPIGAFELAKAVEELGAGEILLNCIDCDGQGK 521
Query: 508 GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKE 567
GFD+DL+KLISD+V IPVIASSGAG +HFS+VF KTNASAALAAGIFHRKEVPIQSVKE
Sbjct: 522 GFDIDLVKLISDSVGIPVIASSGAGTPDHFSEVFEKTNASAALAAGIFHRKEVPIQSVKE 581
Query: 568 HLYKEGIEVRI 578
HL +E IEVRI
Sbjct: 582 HLQEERIEVRI 592
|
|
| POMBASE|SPBC418.01c his4 "imidazoleglycerol-phosphate synthase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1396 (496.5 bits), Expect = 8.6e-143, P = 8.6e-143
Identities = 283/544 (52%), Positives = 374/544 (68%)
Query: 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTG 108
+V+++DYG+GNVRS+ NA+R+LGF + ++ P DI A LIFPGVG F D L K G
Sbjct: 2 IVSIVDYGSGNVRSLINAVRYLGFETQWIRNPHDIEKAECLIFPGVGNFGFVCDSLAKQG 61
Query: 109 MAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG 168
E L Y +PF+ +C+G+Q LF+ S E GLG+ PG+V RFD+ + VP IG
Sbjct: 62 FLEPLRRYALSGKPFMAVCVGIQALFEGSVEAPHSKGLGVFPGLVQRFDNDDK-TVPHIG 120
Query: 169 WNALQITKD-SEILDDVGDHH-VYFVHSYRAMPSDD---NKEWVSSTCNYG-DNFIASVR 222
WN+ + D S+ + H YFVHSY +P E+ +T YG + F+ ++
Sbjct: 121 WNSCAVRSDTSKEFFGMRPHDKFYFVHSYM-IPEKGLILPPEFKIATTKYGNETFVGAIV 179
Query: 223 RGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPTEGKALKL--------AKRVIACL 274
+ N A QFHPEKSG GL L+ FL T ++P G+A KL KR+IACL
Sbjct: 180 KNNFLATQFHPEKSGSAGLRCLKAFL---TGNYEQPISGEASKLIENSFGGLTKRIIACL 236
Query: 275 DVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRD 334
DVR+ND GDLVVTKGDQYDVRE + +EVRNLGKPVEL ++Y++EGADE+ FLNIT FR+
Sbjct: 237 DVRSNDAGDLVVTKGDQYDVREKSSGSEVRNLGKPVELCQRYFQEGADEVVFLNITSFRN 296
Query: 335 FPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIG 394
P+ D PMLQVL ++ VFVPLTVGGGIRD +D +G + ++EVA YFRSGADK+SIG
Sbjct: 297 CPMADAPMLQVLEKAAQTVFVPLTVGGGIRDVSDPDGTFHPAVEVAGIYFRSGADKVSIG 356
Query: 395 SDAVYAAEDYLKTGVK-TGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVT 453
SDAVYAAE Y + G K +GK+++E IS+ YGNQAVV+S+DP+R Y+ P D + V+ +
Sbjct: 357 SDAVYAAEKYYENGKKLSGKTAIETISKAYGNQAVVISVDPKRQYVKVPEDTKHHVVKTS 416
Query: 454 DLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDL 513
LGPNGE Y WYQCTV GGRE R I EL +A E +GAGE+LLNC+D DG G+D++L
Sbjct: 417 RLGPNGEAYCWYQCTVKGGREYRDIDVVELTRACEAMGAGEVLLNCMDQDGSNAGYDIEL 476
Query: 514 IKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEG 573
++L+ ++V+IPVIASSGAG +HF +VF++T+ AALAAGIFHR+ I+ VKE+L
Sbjct: 477 VRLVKNSVNIPVIASSGAGIPQHFEEVFKETDCDAALAAGIFHRQTCRIEDVKEYLAIHD 536
Query: 574 IEVR 577
+ VR
Sbjct: 537 VLVR 540
|
|
| SGD|S000000452 HIS7 "Imidazole glycerol phosphate synthase (glutamine amidotransferase:cyc" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 1349 (479.9 bits), Expect = 8.3e-138, P = 8.3e-138
Identities = 278/549 (50%), Positives = 365/549 (66%)
Query: 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED--ILNANRLIFPGVGAFAAAMDVLNK 106
VV ++D +GN++S+ NAI HLG+ ++ V++P+D I +RLI PGVG + +D L
Sbjct: 3 VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFN 62
Query: 107 TGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQ 166
G + + YIE +P +GIC+GLQ LF S E+ GL I + RFD S VP+
Sbjct: 63 RGFEKPIREYIESGKPIMGICVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEK-PVPE 121
Query: 167 IGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKE------WVSSTCNYG-DNFIA 219
IGWN+ I ++ YFVHS+ A+ + + K+ W + YG + FIA
Sbjct: 122 IGWNSC-IPSENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIA 180
Query: 220 SVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTN-IPKKPTEGKALK--------LAKRV 270
+V + N+ A QFHPEKSG GL+V+ FL ++ IP E K L L +R+
Sbjct: 181 AVNKNNIFATQFHPEKSGKAGLNVIENFLKQQSPPIPNYSAEEKELLMNDYSNYGLTRRI 240
Query: 271 IACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNIT 330
IACLDVR ND+GDLVVTKGDQYDVRE + VRNLGKPV+LA++YY++GADE++FLNIT
Sbjct: 241 IACLDVRTNDQGDLVVTKGDQYDVREKSDGKGVRNLGKPVQLAQKYYQQGADEVTFLNIT 300
Query: 331 GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390
FRD PL D PML+VL+ ++ VFVPLTVGGGI+D D +G +LEVAS YFRSGADK
Sbjct: 301 SFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADK 360
Query: 391 ISIGSDAVYAAEDYLKTGVK-TGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKA 449
+SIG+DAVYAAE Y + G + G S +E IS+ YG QAVV+S+DP+RVY+ D + K
Sbjct: 361 VSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKV 420
Query: 450 VRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF 509
GPNGE+Y WYQCT+ GGRE R +G +EL +A E LGAGEILLNCID DG G+
Sbjct: 421 FETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSGY 480
Query: 510 DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569
D++LI+ + DAV IPVIASSGAG EHF + F KT A A L AG+FHR E + VKE+L
Sbjct: 481 DLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYL 540
Query: 570 YKEGIEVRI 578
+ G++VR+
Sbjct: 541 LEHGLKVRM 549
|
|
| ASPGD|ASPL0000068850 hisHF [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
Identities = 272/545 (49%), Positives = 360/545 (66%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
V LLDY AGNVRS+ NAI +G+ ++ V++P D+ + +LI PGVG F + L+ G
Sbjct: 4 VHLLDYVAGNVRSLVNAINKVGYEVEWVRSPSDLKDVEKLILPGVGHFGHCLSQLSSGGY 63
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
+ + +I +PF+GIC+GLQ LF+SSEE+ + GLG IP + +FD+
Sbjct: 64 LQPIREHIASGKPFMGICVGLQSLFESSEEDPNIPGLGTIPARLRKFDAKTKSVPHIGWN 123
Query: 170 NALQITKDS---EILDDVG-DHHVYFVHSYRAM--PSDDNKE-WVSSTCNYGDN-FIASV 221
+A DS + + Y+VHSY A P K+ W+ +T +YG+ FI ++
Sbjct: 124 SATDTRIDSTGGQTFYGLSPSSKYYYVHSYAAPYEPGILEKDGWLVATASYGEEKFIGAI 183
Query: 222 RRGNVHAVQFHPEKSGDVGLSVLRRFL-----HPKTNIPKKPTEGKALKLAKRVIACLDV 276
R N+ A QFHPEKSG GL LR FL H T + G+ L +R+IACLDV
Sbjct: 184 ARDNIFATQFHPEKSGQAGLRTLRAFLDGAQLHSVT-LEDSILTGEKNGLTRRIIACLDV 242
Query: 277 RANDKGDLVVTKGDQYDVREHTKEN---EVRNLGKPVELARQYYKEGADEISFLNITGFR 333
R ND GDLVVTKGDQYDVRE + +VRNLGKPV++A++YY++GADE++FLNIT FR
Sbjct: 243 RTNDVGDLVVTKGDQYDVREKDGADAGGQVRNLGKPVDMAKKYYEQGADEVTFLNITSFR 302
Query: 334 DFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISI 393
+ PL DLPML++LR TSE VFVPLT+GGGIRD D +G H +L+VAS YF+SGADK+SI
Sbjct: 303 NCPLADLPMLEILRRTSETVFVPLTIGGGIRDTVDTDGTHIPALDVASMYFKSGADKVSI 362
Query: 394 GSDAVYAAEDYLKTG-VKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRV 452
GSDAV AAEDY G V +GK+++E IS+ YGNQAVVVS+DP+RVY++ P D + + +
Sbjct: 363 GSDAVVAAEDYYAAGKVLSGKTAIETISKAYGNQAVVVSVDPKRVYVSQPEDTKHRTIET 422
Query: 453 TDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMD 512
G+ + WYQCT+ GGRE R + +L +AVE +GAGEILLNCID DG GFD++
Sbjct: 423 KFPNAAGQNFCWYQCTIKGGRETRDLDVCQLVQAVEAMGAGEILLNCIDKDGSNSGFDLE 482
Query: 513 LIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572
LI + AV IPVIASSGAG +HF +VF +T AAL AG+FHR E + VK++L
Sbjct: 483 LINHVKAAVKIPVIASSGAGMPKHFEEVFDQTTTDAALGAGMFHRGEYTVGEVKQYLEDR 542
Query: 573 GIEVR 577
G VR
Sbjct: 543 GFLVR 547
|
|
| UNIPROTKB|G4NDI4 MGG_00253 "Imidazole glycerol phosphate synthase subunit hisF" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
Identities = 237/411 (57%), Positives = 284/411 (69%)
Query: 178 SEILDDVGDHHVYFVHSYRA--MPSD-DNKEWVSSTCNYGDN-FIASVRRGNVHAVQFHP 233
S +LD Y+VHSY+ +P + + + W +T YG+ F+ +V RGNV QFHP
Sbjct: 140 STLLDLRPSSKYYYVHSYKYPYVPGELEAQGWTVATGVYGEETFVGAVARGNVLVTQFHP 199
Query: 234 EKSGDVGLSVLRRFLHPKT-----NIPKKPTEGKALKLAKRVIACLDVRANDKGDLVVTK 288
EKSG GL VLR FL P + P L +RVIACLDVR ND GDLVVTK
Sbjct: 200 EKSGVAGLRVLRSFLDPSGAASLGSAAVAPRNPVPAGLTRRVIACLDVRTNDAGDLVVTK 259
Query: 289 GDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL 348
GDQYDVRE + + VRNLGKPV+LA++YY++GADE++FLNIT FRD PL DLPML+VLRL
Sbjct: 260 GDQYDVREKSSDRGVRNLGKPVDLAKKYYEQGADEVTFLNITSFRDCPLADLPMLEVLRL 319
Query: 349 TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTG 408
TSE VFVPLTVGGGIRD D +G S+L+VAS YFRSGADK+SIGSDAV AAE+Y G
Sbjct: 320 TSETVFVPLTVGGGIRDTVDVDGTKVSALDVASMYFRSGADKVSIGSDAVTAAEEYYAAG 379
Query: 409 VKT--GKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466
KT G +++EQISR YGNQAVVVS+DP+RVY+ P ++ GPNGE Y WY
Sbjct: 380 -KTLSGSTAIEQISRAYGNQAVVVSVDPKRVYVASPEATRHATIQTAFPGPNGEAYCWYA 438
Query: 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVI 526
CT GGRE R + EL +AVE +GAGEILLNCID DG GFD++LI + AV IPVI
Sbjct: 439 CTAKGGRETRDVDVVELTQAVEAMGAGEILLNCIDKDGTNSGFDLELIAQVKAAVKIPVI 498
Query: 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 577
ASSGAG HF +VF KT AAL AGIFHR E + VK+HL +G+ VR
Sbjct: 499 ASSGAGNPGHFEEVFEKTTTDAALGAGIFHRGEYTVTQVKDHLATKGLLVR 549
|
|
| CGD|CAL0006063 HIS7 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 6.4e-106, Sum P(3) = 6.4e-106
Identities = 159/287 (55%), Positives = 201/287 (70%)
Query: 301 NEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG 360
++VRNLGKPVELA +YY +GADEI+FLNIT FR+ PL DLPMLQVL+ +E +FVPLTVG
Sbjct: 335 SQVRNLGKPVELATKYYNQGADEITFLNITSFRNSPLKDLPMLQVLKKAAETIFVPLTVG 394
Query: 361 GGIRDFTDAN-GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL-KTGVKTGKSSLEQ 418
GGI+D D G+ +++VA YF+SGADKISIGSDAV AE+Y G TG SS+E
Sbjct: 395 GGIKDLYDPETGKTVPAVDVAHLYFQSGADKISIGSDAVTIAENYYANNGEITGLSSIET 454
Query: 419 ISRVYGNQAVVVSIDPRRVYITHPND--VEFKAVRVTD---LGPNGEEYAWYQCTVNGGR 473
IS +GNQAVV+S+DP+R YI P + +++TD GPNGE+Y +YQ T GGR
Sbjct: 455 ISSKFGNQAVVISVDPKRKYIKDPTTETTTMQTIKITDPSQYGPNGEQYCYYQVTSQGGR 514
Query: 474 EGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533
+ +GA EL A E LGAGEILLN ID DG KGF++ L++ I VSIPVIASSGAG
Sbjct: 515 KIHELGALELCLACEKLGAGEILLNSIDHDGSNKGFNLQLLQQIKSQVSIPVIASSGAGN 574
Query: 534 VEHFSDVFRKT-NASAALAAGIFHRKEVPIQSVKEHLYKEG-IEVRI 578
+HF VF AAL AG+FHR E + VK++L +E ++VR+
Sbjct: 575 PQHFQQVFEMDCGIDAALGAGLFHRGEYTVNQVKKYLQQEAKMDVRL 621
|
|
| UNIPROTKB|O53908 hisF "Imidazole glycerol phosphate synthase subunit HisF" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 256 (95.2 bits), Expect = 6.4e-40, Sum P(2) = 6.4e-40
Identities = 58/127 (45%), Positives = 74/127 (58%)
Query: 451 RVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFD 510
R +G W + T +GGR G + A + A DLG GEILLN +D DG GFD
Sbjct: 143 RTVPVGSAPTPSGW-EVTTHGGRRGTGMDAVQWAARGADLGVGEILLNSMDADGTKAGFD 201
Query: 511 MDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570
+ L++ + AV++PVIAS GAGAVEHF+ A A LAA +FH +E+ I VK L
Sbjct: 202 LALLRAVRAAVTVPVIASGGAGAVEHFAPAVA-AGADAVLAASVFHFRELTIGQVKAALA 260
Query: 571 KEGIEVR 577
EGI VR
Sbjct: 261 AEGITVR 267
|
|
| TIGR_CMR|GSU_3095 GSU_3095 "imidazoleglycerol phosphate synthase, cyclase subunit" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 60/118 (50%), Positives = 73/118 (61%)
Query: 461 EYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDA 520
E W T +GGR I A E A+ +E+ GAGEILL +D DG G+D+ L + I DA
Sbjct: 137 ENRWEVYT-HGGRNPTGIDAVEWARRMEEYGAGEILLTSMDRDGTKDGYDIPLTRAIVDA 195
Query: 521 VSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578
VSIPVIAS G G +EH D F K ASA LAA IFH KE I KE+L + G+ VR+
Sbjct: 196 VSIPVIASGGVGNLEHLYDGFVKAGASACLAASIFHYKEYTIGEAKEYLRQRGVPVRL 253
|
|
| TIGR_CMR|GSU_3097 GSU_3097 "imidazole glycerol phosphate synthase, glutamine amidotransferase subunit" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 86/204 (42%), Positives = 120/204 (58%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ ++DYG GN+RSV+ +GF P+ +L A +++ PGVGAF M L + G
Sbjct: 4 IAIIDYGMGNLRSVQKGFEKVGFEAVVTADPKVVLEAEKIVLPGVGAFRDCMRNLEQGGF 63
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRF-----DSSNGFRV 164
E + I + RPFLGIC+G+QLL S E G GL +IPG V RF + +V
Sbjct: 64 VEPILRVIREGRPFLGICVGMQLLLTDSVEFGLYQGLNVIPGHVLRFPEGMREGGEELKV 123
Query: 165 PQIGWNALQITKDSEILDDVGDH-HVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRR 223
P +GWN L I + +V D +VYFVHSY MP D++ +++TC YG F A++ +
Sbjct: 124 PHMGWNQLSIKRRPPAFAEVEDGANVYFVHSYYEMPDDESV--IAATCTYGVEFCAAIWK 181
Query: 224 GNVHAVQFHPEKSGDVGLSVLRRF 247
N+ A QFHPEKS VGLS+L+ F
Sbjct: 182 DNIVATQFHPEKSQAVGLSILKNF 205
|
|
| TIGR_CMR|BA_1428 BA_1428 "imidazole glycerol phosphate synthase, glutamine amidotransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 388 (141.6 bits), Expect = 6.8e-36, P = 6.8e-36
Identities = 79/200 (39%), Positives = 118/200 (59%)
Query: 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTG 108
++ ++DYG GN+RSV A++++G E+I ++ +I PGVGAF AMD+L +
Sbjct: 1 MIAIIDYGMGNIRSVEQALKYIGAAYIVTSDKEEIFRSDGVILPGVGAFPKAMDILEEKD 60
Query: 109 MAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG 168
+ L +P LGICLG+QLLF+ SEE NGL L+PGV+ + +++P +G
Sbjct: 61 LVRVLQEIGRSRKPLLGICLGMQLLFEKSEELQDCNGLSLLPGVIRKLKVP--YKIPHMG 118
Query: 169 WNALQITKDSEILDDVGD-HHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVH 227
WN L+ + + + V D VY+VHSY A D E V +YG V +GN++
Sbjct: 119 WNELKKEGEIALWNGVEDGSFVYYVHSYYA---DCPNEIVYGISDYGVKVPGFVAKGNIY 175
Query: 228 AVQFHPEKSGDVGLSVLRRF 247
QFHPEKSGD+G+ +L+ F
Sbjct: 176 GAQFHPEKSGDIGMQMLKNF 195
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P33734 | HIS5_YEAST | 4, ., 1, ., 3, ., - | 0.5063 | 0.9134 | 0.9565 | yes | no |
| O94303 | HIS5_SCHPO | 4, ., 1, ., 3, ., - | 0.5183 | 0.9065 | 0.9685 | yes | no |
| Q9SZ30 | HIS5_ARATH | 4, ., 1, ., 3, ., - | 0.8485 | 0.9463 | 0.9239 | yes | no |
| Q9P4P9 | HIS5_EMENI | 4, ., 1, ., 3, ., - | 0.5045 | 0.9048 | 0.9457 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00027290001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (570 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00019988001 | RecName- Full=Imidazoleglycerol-phosphate dehydratase; EC=4.2.1.19; (180 aa) | • | • | • | • | • | 0.998 | ||||
| GSVIVG00021607001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (306 aa) | • | • | • | • | • | 0.993 | ||||
| GSVIVG00002274001 | RecName- Full=Histidinol dehydrogenase; EC=1.1.1.23;; Catalyzes the sequential NAD-dependent ox [...] (438 aa) | • | • | • | • | • | 0.988 | ||||
| GSVIVG00037970001 | SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (289 aa) | • | • | • | • | • | 0.981 | ||||
| GSVIVG00035413001 | SubName- Full=Chromosome chr12 scaffold_78, whole genome shotgun sequence; (390 aa) | • | • | • | • | 0.954 | |||||
| GSVIVG00031801001 | SubName- Full=Chromosome chr18 scaffold_59, whole genome shotgun sequence; (269 aa) | • | • | • | • | 0.945 | |||||
| GSVIVG00024606001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (288 aa) | • | • | • | • | 0.943 | |||||
| GSVIVG00008008001 | SubName- Full=Chromosome undetermined scaffold_1178, whole genome shotgun sequence; (352 aa) | • | • | • | • | 0.880 | |||||
| GSVIVG00029073001 | SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (396 aa) | • | • | 0.860 | |||||||
| GSVIVG00025551001 | RecName- Full=Adenylosuccinate synthetase; EC=6.3.4.4;; Plays an important role in the de novo [...] (489 aa) | • | • | 0.838 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 578 | |||
| PLN02617 | 538 | PLN02617, PLN02617, imidazole glycerol phosphate s | 0.0 | |
| cd04731 | 243 | cd04731, HisF, The cyclase subunit of imidazolegly | 1e-106 | |
| COG0107 | 256 | COG0107, HisF, Imidazoleglycerol-phosphate synthas | 1e-106 | |
| cd01748 | 198 | cd01748, GATase1_IGP_Synthase, Type 1 glutamine am | 1e-105 | |
| TIGR00735 | 254 | TIGR00735, hisF, imidazoleglycerol phosphate synth | 1e-102 | |
| PRK13141 | 205 | PRK13141, hisH, imidazole glycerol phosphate synth | 3e-96 | |
| PRK02083 | 253 | PRK02083, PRK02083, imidazole glycerol phosphate s | 1e-92 | |
| COG0118 | 204 | COG0118, HisH, Glutamine amidotransferase [Amino a | 1e-85 | |
| PRK13181 | 199 | PRK13181, hisH, imidazole glycerol phosphate synth | 2e-79 | |
| PRK13146 | 209 | PRK13146, hisH, imidazole glycerol phosphate synth | 7e-79 | |
| PRK13143 | 200 | PRK13143, hisH, imidazole glycerol phosphate synth | 9e-75 | |
| TIGR01855 | 196 | TIGR01855, IMP_synth_hisH, imidazole glycerol phos | 9e-70 | |
| PRK13170 | 196 | PRK13170, hisH, imidazole glycerol phosphate synth | 3e-57 | |
| pfam00977 | 230 | pfam00977, His_biosynth, Histidine biosynthesis pr | 3e-55 | |
| PRK13152 | 201 | PRK13152, hisH, imidazole glycerol phosphate synth | 5e-55 | |
| TIGR03572 | 232 | TIGR03572, WbuZ, glycosyl amidation-associated pro | 2e-53 | |
| CHL00188 | 210 | CHL00188, hisH, imidazole glycerol phosphate synth | 1e-52 | |
| PRK13142 | 192 | PRK13142, hisH, imidazole glycerol phosphate synth | 8e-45 | |
| PRK14004 | 210 | PRK14004, hisH, imidazole glycerol phosphate synth | 6e-44 | |
| PRK01033 | 258 | PRK01033, PRK01033, imidazole glycerol phosphate s | 4e-41 | |
| pfam00117 | 186 | pfam00117, GATase, Glutamine amidotransferase clas | 1e-31 | |
| cd04723 | 233 | cd04723, HisA_HisF, Phosphoribosylformimino-5-amin | 4e-28 | |
| cd04732 | 234 | cd04732, HisA, HisA | 2e-20 | |
| TIGR00007 | 230 | TIGR00007, TIGR00007, phosphoribosylformimino-5-am | 3e-19 | |
| COG0106 | 241 | COG0106, HisA, Phosphoribosylformimino-5-aminoimid | 4e-18 | |
| PRK13585 | 241 | PRK13585, PRK13585, 1-(5-phosphoribosyl)-5-[(5- ph | 1e-16 | |
| PRK13525 | 189 | PRK13525, PRK13525, glutamine amidotransferase sub | 5e-10 | |
| PRK00748 | 233 | PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5- ph | 3e-09 | |
| cd01750 | 194 | cd01750, GATase1_CobQ, Type 1 glutamine amidotrans | 4e-09 | |
| cd01749 | 183 | cd01749, GATase1_PB, Glutamine Amidotransferase (G | 5e-09 | |
| COG0311 | 194 | COG0311, PDX2, Predicted glutamine amidotransferas | 1e-08 | |
| TIGR03800 | 184 | TIGR03800, PLP_synth_Pdx2, pyridoxal 5'-phosphate | 6e-08 | |
| pfam01174 | 188 | pfam01174, SNO, SNO glutamine amidotransferase fam | 7e-08 | |
| pfam07685 | 157 | pfam07685, GATase_3, CobB/CobQ-like glutamine amid | 9e-08 | |
| PRK13527 | 200 | PRK13527, PRK13527, glutamine amidotransferase sub | 3e-07 | |
| cd01741 | 188 | cd01741, GATase1_1, Subgroup of proteins having th | 3e-07 | |
| PRK00784 | 488 | PRK00784, PRK00784, cobyric acid synthase; Provisi | 3e-07 | |
| cd03128 | 92 | cd03128, GAT_1, Type 1 glutamine amidotransferase | 6e-07 | |
| cd01653 | 115 | cd01653, GATase1, Type 1 glutamine amidotransferas | 6e-07 | |
| cd04722 | 200 | cd04722, TIM_phosphate_binding, TIM barrel protein | 1e-06 | |
| cd01743 | 184 | cd01743, GATase1_Anthranilate_Synthase, Type 1 glu | 1e-06 | |
| COG0518 | 198 | COG0518, GuaA, GMP synthase - Glutamine amidotrans | 5e-06 | |
| COG1492 | 486 | COG1492, CobQ, Cobyric acid synthase [Coenzyme met | 1e-05 | |
| PRK13587 | 234 | PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5- ph | 3e-05 | |
| TIGR01815 | 717 | TIGR01815, TrpE-clade3, anthranilate synthase, alp | 4e-04 | |
| TIGR00888 | 188 | TIGR00888, guaA_Nterm, GMP synthase (glutamine-hyd | 0.002 | |
| TIGR03151 | 307 | TIGR03151, enACPred_II, putative enoyl-[acyl-carri | 0.002 | |
| TIGR02129 | 253 | TIGR02129, hisA_euk, phosphoribosylformimino-5-ami | 0.002 | |
| PRK00074 | 511 | PRK00074, guaA, GMP synthase; Reviewed | 0.004 |
| >gnl|CDD|178226 PLN02617, PLN02617, imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Score = 1109 bits (2869), Expect = 0.0
Identities = 453/537 (84%), Positives = 493/537 (91%), Gaps = 1/537 (0%)
Query: 43 ATSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMD 102
+ S+DS VTLLDYGAGNVRSVRNAIRHLGF IKDVQTPEDILNA+RLIFPGVGAF +AMD
Sbjct: 2 SNSADSEVTLLDYGAGNVRSVRNAIRHLGFTIKDVQTPEDILNADRLIFPGVGAFGSAMD 61
Query: 103 VLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGF 162
VLN GMAEAL YI+ DRPFLGICLGLQLLF+SSEENGPV GLG+IPGVVGRFDSSNG
Sbjct: 62 VLNNRGMAEALREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGL 121
Query: 163 RVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVR 222
RVP IGWNALQITKDSE+LD VG HVYFVHSYRA PSD+NK+WV +TCNYG FIASVR
Sbjct: 122 RVPHIGWNALQITKDSELLDGVGGRHVYFVHSYRATPSDENKDWVLATCNYGGEFIASVR 181
Query: 223 RGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPTEGKALK-LAKRVIACLDVRANDK 281
+GNVHAVQFHPEKSG GLS+LRRFL PK++ +KPTEGKA K LAKRVIACLDVR+NDK
Sbjct: 182 KGNVHAVQFHPEKSGATGLSILRRFLEPKSSATQKPTEGKASKSLAKRVIACLDVRSNDK 241
Query: 282 GDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLP 341
GDLVVTKGDQYDVREH++ EVRNLGKPVELA QYYK+GADE++FLNITGFRDFPLGDLP
Sbjct: 242 GDLVVTKGDQYDVREHSEGREVRNLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLP 301
Query: 342 MLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAA 401
ML+VLR SENVFVPLTVGGGIRDFTDANGR+YSSLEVASEYFRSGADKISIGSDAVYAA
Sbjct: 302 MLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAA 361
Query: 402 EDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461
E+Y+ +GVKTGK+S+EQISRVYGNQAVVVSIDPRRVY+ P+DV FK V+VT+ GPNGEE
Sbjct: 362 EEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEE 421
Query: 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV 521
YAWYQCTV GGREGRPIGAYELAKAVE+LGAGEILLNCIDCDGQGKGFD++L+KL+SDAV
Sbjct: 422 YAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIELVKLVSDAV 481
Query: 522 SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578
+IPVIASSGAG EHFSDVF KTNASAALAAGIFHRKEVPI SVKEHL +EGIE RI
Sbjct: 482 TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIETRI 538
|
Length = 538 |
| >gnl|CDD|240082 cd04731, HisF, The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Score = 318 bits (817), Expect = e-106
Identities = 123/302 (40%), Positives = 162/302 (53%), Gaps = 62/302 (20%)
Query: 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFL 327
KR+I CLDV+ D V KG + R+ G PVELA++Y ++GADE+ FL
Sbjct: 1 KRIIPCLDVK-----DGRVVKGVNFKNL--------RDAGDPVELAKRYNEQGADELVFL 47
Query: 328 NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387
+IT + G ML V+ +E VF+PLTVGGGIR SLE A R+G
Sbjct: 48 DITASSE---GRETMLDVVERVAEEVFIPLTVGGGIR-----------SLEDARRLLRAG 93
Query: 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEF 447
ADK+SI S AV + +I++ +G+Q VVVSID +R
Sbjct: 94 ADKVSINSAAV------------ENPELIREIAKRFGSQCVVVSIDAKRRGD-------- 133
Query: 448 KAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK 507
Y+ +GGR+ + A E AK VE+LGAGEILL +D DG K
Sbjct: 134 ---------------GGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKK 178
Query: 508 GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKE 567
G+D++LI+ +S AV+IPVIAS GAG EHF + F + A AALAA IFH E I +KE
Sbjct: 179 GYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAELKE 238
Query: 568 HL 569
+L
Sbjct: 239 YL 240
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4- carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. Length = 243 |
| >gnl|CDD|223185 COG0107, HisF, Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 318 bits (817), Expect = e-106
Identities = 130/313 (41%), Positives = 175/313 (55%), Gaps = 59/313 (18%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR+I CLDV+ D V KG + +R+ G PVELA++Y +EGADE+
Sbjct: 2 LAKRIIPCLDVK-----DGRVVKGVNF--------KNLRDAGDPVELAKRYNEEGADELV 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT + G ML V+ +E VF+PLTVGGGIR S+E A + R
Sbjct: 49 FLDITASSE---GRETMLDVVERVAEQVFIPLTVGGGIR-----------SVEDARKLLR 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
+GADK+SI S AV E + + + +G+Q +VV+ID +RV
Sbjct: 95 AGADKVSINSAAVKDPE------------LITEAADRFGSQCIVVAIDAKRVP------- 135
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
E WY+ +GGRE + A E AK VE+LGAGEILL +D DG
Sbjct: 136 -------------DGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGT 182
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D++L + + +AV+IPVIAS GAG EHF + F + A AALAA IFH E+ I V
Sbjct: 183 KAGYDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGEITIGEV 242
Query: 566 KEHLYKEGIEVRI 578
KE+L ++GIEVR+
Sbjct: 243 KEYLAEQGIEVRL 255
|
Length = 256 |
| >gnl|CDD|153219 cd01748, GATase1_IGP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS) | Back alignment and domain information |
|---|
Score = 313 bits (805), Expect = e-105
Identities = 102/200 (51%), Positives = 135/200 (67%), Gaps = 3/200 (1%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ ++DYG GN+RSV NA+ LG + PE+IL+A++LI PGVGAF AM L + G+
Sbjct: 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEEILSADKLILPGVGAFGDAMANLRERGL 60
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
EAL I +PFLGICLG+QLLF+SSEE G GLGLIPG V RF +S G +VP +GW
Sbjct: 61 IEALKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGW 120
Query: 170 NALQITKDSEILDDVGDH-HVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHA 228
N L+ITK+S + + D + YFVHSY A P D +++ +T +YG F A+V + N+
Sbjct: 121 NQLEITKESPLFKGIPDGSYFYFVHSYYAPPDD--PDYILATTDYGGKFPAAVEKDNIFG 178
Query: 229 VQFHPEKSGDVGLSVLRRFL 248
QFHPEKSG GL +L+ FL
Sbjct: 179 TQFHPEKSGKAGLKLLKNFL 198
|
Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4- carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 198 |
| >gnl|CDD|233108 TIGR00735, hisF, imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Score = 310 bits (795), Expect = e-102
Identities = 130/312 (41%), Positives = 174/312 (55%), Gaps = 59/312 (18%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR+I CLDVR D V KG Q+ +R+ G PVELA++Y +EGADE+
Sbjct: 2 LAKRIIPCLDVR-----DGRVVKGVQFL--------NLRDAGDPVELAQRYDEEGADELV 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT + G M+ V+ T+E VF+PLTVGGGI+ D + + R
Sbjct: 49 FLDITASSE---GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVD-----------KLLR 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
+GADK+SI + AV E +++ +G+Q +VV+ID +RVY+
Sbjct: 95 AGADKVSINTAAVKNPELI------------YELADRFGSQCIVVAIDAKRVYVN----- 137
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
Y WY+ + GGRE + A E AK VE LGAGEILL +D DG
Sbjct: 138 ---------------SYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGT 182
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D++L K +S+AV IPVIAS GAG EHF + F K A AALAA +FH +E+ I V
Sbjct: 183 KSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEV 242
Query: 566 KEHLYKEGIEVR 577
KE+L + GI VR
Sbjct: 243 KEYLAERGIPVR 254
|
[Amino acid biosynthesis, Histidine family]. Length = 254 |
| >gnl|CDD|237288 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Score = 292 bits (749), Expect = 3e-96
Identities = 98/200 (49%), Positives = 132/200 (66%), Gaps = 3/200 (1%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ ++DYG GN+RSV A+ LG PE+IL A+ +I PGVGAF AM L + G+
Sbjct: 2 IAIIDYGMGNLRSVEKALERLGAEAVITSDPEEILAADGVILPGVGAFPDAMANLRERGL 61
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
E + + +P LGICLG+QLLF+SSEE G GLGL+PG V RF G +VP +GW
Sbjct: 62 DEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGW 121
Query: 170 NALQITKDSEILDDVGDH-HVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHA 228
N L++ K+S +L + D +VYFVHSY A P D+ E+V++T +YG F A+V + NV
Sbjct: 122 NQLELKKESPLLKGIPDGAYVYFVHSYYADPCDE--EYVAATTDYGVEFPAAVGKDNVFG 179
Query: 229 VQFHPEKSGDVGLSVLRRFL 248
QFHPEKSGDVGL +L+ F+
Sbjct: 180 AQFHPEKSGDVGLKILKNFV 199
|
Length = 205 |
| >gnl|CDD|234996 PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Score = 284 bits (729), Expect = 1e-92
Identities = 122/313 (38%), Positives = 169/313 (53%), Gaps = 61/313 (19%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR+I CLDV+ V KG + R+ G PVELA++Y +EGADE+
Sbjct: 2 LAKRIIPCLDVKDG-----RVVKGVNF--VNL------RDAGDPVELAKRYNEEGADELV 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT + G ML V+ +E VF+PLTVGGGIR S+E A R
Sbjct: 49 FLDITASSE---GRDTMLDVVERVAEQVFIPLTVGGGIR-----------SVEDARRLLR 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
+GADK+SI S AV + + + +G+Q +VV+ID +R
Sbjct: 95 AGADKVSINSAAV------------ANPELISEAADRFGSQCIVVAIDAKR--------- 133
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
E ++ +GGR+ + A E AK VE+LGAGEILL +D DG
Sbjct: 134 -------------DPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGT 180
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D++L + +SDAV++PVIAS GAG +EHF + F + A AALAA IFH E+ I +
Sbjct: 181 KNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGEL 240
Query: 566 KEHLYKEGIEVRI 578
K +L ++GI VR+
Sbjct: 241 KAYLAEQGIPVRL 253
|
Length = 253 |
| >gnl|CDD|223196 COG0118, HisH, Glutamine amidotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 1e-85
Identities = 95/201 (47%), Positives = 130/201 (64%), Gaps = 4/201 (1%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
V ++DYG+GN+RSV+ A+ LG + + PE+IL A++LI PGVGAF AAM L + G+
Sbjct: 4 VAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEILKADKLILPGVGAFGAAMANLRERGL 63
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
EA+ +E +PFLGICLG+QLLF+ SEE G V GLGLIPG V RF + +VP +GW
Sbjct: 64 IEAIKEAVESGKPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFP-AEDLKVPHMGW 122
Query: 170 NALQITKDSEILDDVGDH-HVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHA 228
N ++ + + + D + YFVHSY P + V +T +YG+ F A+V + NV
Sbjct: 123 NQVEFVRGHPLFKGIPDGAYFYFVHSYYVPPGNPET--VVATTDYGEPFPAAVAKDNVFG 180
Query: 229 VQFHPEKSGDVGLSVLRRFLH 249
QFHPEKSG GL +L+ FL
Sbjct: 181 TQFHPEKSGKAGLKLLKNFLE 201
|
Length = 204 |
| >gnl|CDD|183878 PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 2e-79
Identities = 98/200 (49%), Positives = 134/200 (67%), Gaps = 5/200 (2%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ ++DYGAGN+RSV NA++ LG PE+I A+++I PGVGAF AM L ++G+
Sbjct: 2 IAIIDYGAGNLRSVANALKRLGVEAVVSSDPEEIAGADKVILPGVGAFGQAMRSLRESGL 61
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
EAL ++EK +P LGICLG+QLLF+SSEE G V GLGLIPG V RF S +VPQ+GW
Sbjct: 62 DEALKEHVEKKQPVLGICLGMQLLFESSEE-GNVKGLGLIPGDVKRFR-SEPLKVPQMGW 119
Query: 170 NALQITKDSEILDDVGDH-HVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHA 228
N+++ K+S + + + + YFVHSY D E V +T YG F ++V + N++A
Sbjct: 120 NSVKPLKESPLFKGIEEGSYFYFVHSYYVPCED--PEDVLATTEYGVPFCSAVAKDNIYA 177
Query: 229 VQFHPEKSGDVGLSVLRRFL 248
VQFHPEKSG GL +L+ F
Sbjct: 178 VQFHPEKSGKAGLKLLKNFA 197
|
Length = 199 |
| >gnl|CDD|237290 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Score = 247 bits (632), Expect = 7e-79
Identities = 92/205 (44%), Positives = 123/205 (60%), Gaps = 7/205 (3%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQT--PEDILNANRLIFPGVGAFAAAMDVLNKT 107
V ++DYG+GN+RS A+ G G V T P+ + A+R++ PGVGAFA M L
Sbjct: 4 VAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAVAAADRVVLPGVGAFADCMRGLRAV 63
Query: 108 GMAEALC-AYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSN-GFRVP 165
G+ EA+ A + RPFLGIC+G+QLLF+ E+G GLGLIPG V RF +VP
Sbjct: 64 GLGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVP 123
Query: 166 QIGWNALQITKDSEILDDVGDH-HVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRG 224
+GWN + T+D + + D YFVHSY A P++ V + +YG F A+V R
Sbjct: 124 HMGWNTVDQTRDHPLFAGIPDGARFYFVHSYYAQPANPAD--VVAWTDYGGPFTAAVARD 181
Query: 225 NVHAVQFHPEKSGDVGLSVLRRFLH 249
N+ A QFHPEKS D GL++LR FL
Sbjct: 182 NLFATQFHPEKSQDAGLALLRNFLA 206
|
Length = 209 |
| >gnl|CDD|237289 PRK13143, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Score = 236 bits (604), Expect = 9e-75
Identities = 90/199 (45%), Positives = 129/199 (64%), Gaps = 6/199 (3%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ ++DYG GN+RSV A+ G + PE+IL+A+ ++ PGVGAF AAM+ L+ +
Sbjct: 3 IVIIDYGVGNLRSVSKALERAGAEVVITSDPEEILDADGIVLPGVGAFGAAMENLSP--L 60
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
+ + +PFLGICLG+QLLF+SSEE G V GLGL PG V RF + +VP +GW
Sbjct: 61 RDVILEAARSGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAGV--KVPHMGW 118
Query: 170 NALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAV 229
N +++ KD + + + +VYFVHSY A P D++++V +T +YG F A+V NV
Sbjct: 119 NTVKVVKDCPLFEGIDGEYVYFVHSYYAYP--DDEDYVVATTDYGIEFPAAVCNDNVFGT 176
Query: 230 QFHPEKSGDVGLSVLRRFL 248
QFHPEKSG+ GL +L F+
Sbjct: 177 QFHPEKSGETGLKILENFV 195
|
Length = 200 |
| >gnl|CDD|233601 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 9e-70
Identities = 84/200 (42%), Positives = 124/200 (62%), Gaps = 7/200 (3%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ ++DYG GN+ SV+ A++ +G V+ ++ A++LI PGVGAF AAM L + G+
Sbjct: 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDSKEAELADKLILPGVGAFGAAMARLRENGL 60
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
+ + +P LGICLG+QLLF+ SEE G V GLGLI G V + +VP +GW
Sbjct: 61 DLFVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKL---EARKVPHMGW 117
Query: 170 NALQITKDSEILDDVGDH-HVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHA 228
N + K+S +L+ + + + YFVHSY A+ + E V + +YG+ F A+V++GN+
Sbjct: 118 NEVHPVKESPLLNGIDEGAYFYFVHSYYAVCEE---EAVLAYADYGEKFPAAVQKGNIFG 174
Query: 229 VQFHPEKSGDVGLSVLRRFL 248
QFHPEKSG GL +L FL
Sbjct: 175 TQFHPEKSGKTGLKLLENFL 194
|
This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6 [Amino acid biosynthesis, Histidine family]. Length = 196 |
| >gnl|CDD|183877 PRK13170, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 3e-57
Identities = 77/200 (38%), Positives = 114/200 (57%), Gaps = 9/200 (4%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
V ++D G N+ SV+ AI LG+ + P+ IL A++L PGVG AAMD L + +
Sbjct: 3 VVIIDTGCANLSSVKFAIERLGYEPVVSRDPDVILAADKLFLPGVGTAQAAMDQLREREL 62
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
+ + A +P LGICLG+QLL + SEE+G V+ LG+I G V + G +P +GW
Sbjct: 63 IDLIKAC---TQPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTD-FGLPLPHMGW 118
Query: 170 NALQITKDSEILDDVGD-HHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHA 228
N + + + D + YFVHSY + E+ + CNYG+ F A++++ N
Sbjct: 119 NQVTPQAGHPLFQGIEDGSYFYFVHSYAMPVN----EYTIAQCNYGEPFSAAIQKDNFFG 174
Query: 229 VQFHPEKSGDVGLSVLRRFL 248
VQFHPE+SG G +L+ FL
Sbjct: 175 VQFHPERSGAAGAQLLKNFL 194
|
Length = 196 |
| >gnl|CDD|216225 pfam00977, His_biosynth, Histidine biosynthesis protein | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 3e-55
Identities = 91/294 (30%), Positives = 142/294 (48%), Gaps = 65/294 (22%)
Query: 269 RVIACLDVRANDKGDLVV-TKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFL 327
R+I +D++ G +V KGD + G PVELA++Y +EGADE+ F+
Sbjct: 1 RIIPAIDLKD---GRVVRLYKGD--------YFKNLVYAGDPVELAKRYEEEGADELHFV 49
Query: 328 NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387
++ ++ G L ++ +E VF+P+ VGGGIR SLE A +G
Sbjct: 50 DLDAAKE---GRPVNLDLIEEIAEEVFIPVQVGGGIR-----------SLEDAERLLSAG 95
Query: 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEF 447
ADK+ IG+ AV ++ +++ + +G+Q +VV+ID +
Sbjct: 96 ADKVIIGTAAV---KN---------PELIKEAAEKFGSQCIVVAIDAK------------ 131
Query: 448 KAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK 507
+ +NG RE I A E AK +E+LGAGEILL ID DG
Sbjct: 132 --------------REDGKVAINGWREETGIDAVEWAKKLEELGAGEILLTDIDRDGTLS 177
Query: 508 GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVP 561
G D++L + +++AV+IPVIAS G G++E ++F +A H E+
Sbjct: 178 GPDLELTRELAEAVNIPVIASGGVGSLEDLKELF-SEGVDGVIAGSALHEGEIT 230
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalyzed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel . This family belong to the common phosphate binding site TIM barrel family. Length = 230 |
| >gnl|CDD|171876 PRK13152, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 5e-55
Identities = 79/202 (39%), Positives = 117/202 (57%), Gaps = 5/202 (2%)
Query: 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTG 108
++ L+DY AGN+ SV A +G + P+D+ A++L+ PGVG+F AM L + G
Sbjct: 1 MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLPGVGSFKEAMKNLKELG 60
Query: 109 MAEALCAYI-EKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQI 167
EAL + + +P LGICLG+QL + E G GLG I G V +F+ ++P +
Sbjct: 61 FIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHM 120
Query: 168 GWNALQITKDSEILDDVGDH-HVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNV 226
GWN L+I K S + + + YFVHS+ D E+VS+ YG F+AS+++ N+
Sbjct: 121 GWNELEILKQSPLYQGIPEKSDFYFVHSFYVKCKD---EFVSAKAQYGHKFVASLQKDNI 177
Query: 227 HAVQFHPEKSGDVGLSVLRRFL 248
A QFHPEKS ++GL +L F
Sbjct: 178 FATQFHPEKSQNLGLKLLENFA 199
|
Length = 201 |
| >gnl|CDD|132611 TIGR03572, WbuZ, glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 2e-53
Identities = 105/291 (36%), Positives = 146/291 (50%), Gaps = 61/291 (20%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
L KR+I CL ++ G LV T + + R +G PV AR Y +GADE+
Sbjct: 2 LKKRIIPCLLLK---DGRLVKTV----------QFKDPRYIGDPVNAARIYNAKGADELI 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
L+I + G P+ +++ +E F+PLTVGGGIR SLE A +
Sbjct: 49 VLDIDASKR---GREPLFELISNLAEECFMPLTVGGGIR-----------SLEDAKKLLS 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
GADK+SI + A+ +E+ +R +G+Q VVVSID ++
Sbjct: 95 LGADKVSINTAAL------------ENPDLIEEAARRFGSQCVVVSIDVKK--------- 133
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+G +Y Y + GR E A+ E LGAGEILLN ID DG
Sbjct: 134 ----------ELDGSDYKVY---SDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGT 180
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556
KG+D++LIK +SDAVSIPVIA GAG+++ +V + ASA AA +FH
Sbjct: 181 MKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli , IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to proteins provide ammonium ions to the amidotransferase when these are in low concentration. WbuY (like HisH) is proposed to act as a glutaminase to release ammonium. In histidine biosynthesis this is also dispensible in the presence of exogenous ammonium ion. HisH and HisF form a complex such that the ammonium ion is passed directly to HisF where it is used in an amidation reaction causing a subsequent cleavage and cyclization. In the case of WbuYZ, the ammonium ion would be passed from WbuY to WbuZ. WbuZ, being non-essential and so similar to HisF that a sugar substrate is unlikely, would function instead as a amoonium channel to the WbuX protein which does the enzymatic work. Length = 232 |
| >gnl|CDD|214389 CHL00188, hisH, imidazole glycerol phosphate synthase subunit hisH; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (452), Expect = 1e-52
Identities = 77/208 (37%), Positives = 112/208 (53%), Gaps = 13/208 (6%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ ++DY GN+ SV AI+ G + + ++ + L+ PGVG+F AM L K G+
Sbjct: 4 IGIIDYSMGNLHSVSRAIQQAGQQPCIINSESELAQVHALVLPGVGSFDLAMKKLEKKGL 63
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
+ +I + PF+GICLGL LLF++SEE G GLG+ G V R S +P +GW
Sbjct: 64 ITPIKKWIAEGNPFIGICLGLHLLFETSEE-GKEEGLGIYKGQVKRLKHSPVKVIPHMGW 122
Query: 170 NALQITKDSEILDDVGDHH--------VYFVHSYRAMPSDDNKEWVSSTCNYGD-NFIAS 220
N L+ SE + + YFVHSY MP ++T YG +A+
Sbjct: 123 NRLECQN-SECQNSEWVNWKAWPLNPWAYFVHSYGVMPKSQAC--ATTTTFYGKQQMVAA 179
Query: 221 VRRGNVHAVQFHPEKSGDVGLSVLRRFL 248
+ N+ A+QFHPEKSG+ GL +LR F+
Sbjct: 180 IEYDNIFAMQFHPEKSGEFGLWLLREFM 207
|
Length = 210 |
| >gnl|CDD|171871 PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 8e-45
Identities = 77/200 (38%), Positives = 114/200 (57%), Gaps = 15/200 (7%)
Query: 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTG 108
++ ++DYG GN+ +V+ AI HLG+ + T + I A +I PGVG F AM + +
Sbjct: 1 MIVIVDYGLGNISNVKRAIEHLGYEVVVSNTSKIIDQAETIILPGVGHFKDAMSEIKRLN 60
Query: 109 MAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG 168
+ L D+ +GICLG+QL+++ S+E G +GLG IPG + R + + VP +G
Sbjct: 61 LNAILAK--NTDKKMIGICLGMQLMYEHSDE-GDASGLGFIPGNISRIQTE--YPVPHLG 115
Query: 169 WNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHA 228
WN L ++K + D VYFVHSY+A S E V + YG + A V+ N
Sbjct: 116 WNNL-VSKHPMLNQD-----VYFVHSYQAPMS----ENVIAYAQYGADIPAIVQFNNYIG 165
Query: 229 VQFHPEKSGDVGLSVLRRFL 248
+QFHPEKSG GL +LR+ +
Sbjct: 166 IQFHPEKSGTYGLQILRQAI 185
|
Length = 192 |
| >gnl|CDD|172505 PRK14004, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 6e-44
Identities = 81/211 (38%), Positives = 116/211 (54%), Gaps = 13/211 (6%)
Query: 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTG 108
++ +LDYG GN+ S A+ PE I N+ LI PG G F AM+ LN TG
Sbjct: 1 MIAILDYGMGNIHSCLKAVSLYTKDFVFTSDPETIENSKALILPGDGHFDKAMENLNSTG 60
Query: 109 MAEALCAYIEKDRPFLGICLGLQLLFQSSEENGP------VNGLGLIPGVVGRFDSSNGF 162
+ + ++E +P GIC+G Q+LF+SSEE + GLG I G + +F+ + F
Sbjct: 61 LRSTIDKHVESGKPLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGKD-F 119
Query: 163 RVPQIGWNALQITK--DSEILDDVGDHH-VYFVHSYRAMPSDDNKEWVSSTCN-YGDNFI 218
+VP IGWN LQI + S++L +GD YF+HSYR P+ ++ C+ Y + F
Sbjct: 120 KVPHIGWNRLQIRRKDKSKLLKGIGDQSFFYFIHSYR--PTGAEGNAITGLCDYYQEKFP 177
Query: 219 ASVRRGNVHAVQFHPEKSGDVGLSVLRRFLH 249
A V + N+ QFHPEKS GL +L F+
Sbjct: 178 AVVEKENIFGTQFHPEKSHTHGLKLLENFIE 208
|
Length = 210 |
| >gnl|CDD|234891 PRK01033, PRK01033, imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 4e-41
Identities = 96/320 (30%), Positives = 145/320 (45%), Gaps = 72/320 (22%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
L R+I CL ++ G LV T K + R +G P+ R + ++ DE+
Sbjct: 2 LRPRIIPCLLLK---DGGLVKTV----------KFKDPRYIGDPINAVRIFNEKEVDELI 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
L+I + G P +++ + F+PL GGGI+ +LE A + F
Sbjct: 49 VLDIDASKR---GSEPNYELIENLASECFMPLCYGGGIK-----------TLEQAKKIFS 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
G +K+SI + A+ ED + + + +G+Q+VVVSID ++
Sbjct: 95 LGVEKVSINTAAL---ED---------PDLITEAAERFGSQSVVVSIDVKK--------- 133
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGRE-GRPIGAYELAKAVEDLGAGEILLNCIDCDG 504
G+ + T NG ++ + ELAK E LGAGEILLN ID DG
Sbjct: 134 ----------NLGGKFDVY---THNGTKKLKKDP--LELAKEYEALGAGEILLNSIDRDG 178
Query: 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH----RKEV 560
KG+D++L+K +A+ IP+IA GAG+++ + A AA A +F K V
Sbjct: 179 TMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFKGVYKAV 238
Query: 561 PIQ----SVKEHLYKEGIEV 576
I KE L K GI V
Sbjct: 239 LINYPNGDEKEELLKAGIPV 258
|
Length = 258 |
| >gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-31
Identities = 49/207 (23%), Positives = 73/207 (35%), Gaps = 33/207 (15%)
Query: 52 LLDYGAGNVRSVRNAIRHLGFGIK------DVQTPEDILNANRLIFPGVGAFAAAMDVLN 105
L+D G ++ A+R LG ++ + ++ +I PG G+ A
Sbjct: 2 LIDNGDSFTYNLARALRELGVEVEVVPNDTPAEEILELNPDGIIISPGPGSPGAL----- 56
Query: 106 KTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVP 165
G EA+ E P LGICLG QLL + G +I P
Sbjct: 57 -GGAIEAIKELRENKIPILGICLGHQLLALAF-------GGKVIKAKK----------EP 98
Query: 166 QIGWNALQITKDSEILDDVGD-HHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRG 224
G N + D + + + V HSY P + + +A +
Sbjct: 99 HHGKN-SPVGHDKGLFYGLPNVFIVRRYHSYAVDPDTLPDGLEVTAASENGGIMAIRHKE 157
Query: 225 N-VHAVQFHPEKSGDV-GLSVLRRFLH 249
N + VQFHPE S G +L F
Sbjct: 158 NPIFGVQFHPESSLTPGGPELLFNFFI 184
|
Length = 186 |
| >gnl|CDD|240074 cd04723, HisA_HisF, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 4e-28
Identities = 62/300 (20%), Positives = 114/300 (38%), Gaps = 68/300 (22%)
Query: 269 RVIACLDVRANDKGDLVVTKGDQYDVREHTKENE-VRNLGKPVELARQYYKEGADEISFL 327
R+I +D++ D VV G D + + + P+++AR Y + G +
Sbjct: 1 RIIPVIDLK-----DGVVVHGVGGDRDNYRPITSNLCSTSDPLDVARAYKELGFRGLYIA 55
Query: 328 NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387
++ G + +R + + L V GGIR E A E+ + G
Sbjct: 56 DLDAIM----GRGDNDEAIRELAAAWPLGLWVDGGIRSL-----------ENAQEWLKRG 100
Query: 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEF 447
A ++ +G++ + + +D E G Q +V+S+D R +
Sbjct: 101 ASRVIVGTETLPSDDD-------------EDRLAALGEQRLVLSLDFRGGQL-------- 139
Query: 448 KAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK 507
+ IG EL + + E+++ ID G G+
Sbjct: 140 ------------------------LKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGSGQ 174
Query: 508 GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKE 567
G D++L++ ++ IPVIA+ G +VE + + AS AL A H + ++ V
Sbjct: 175 GPDLELLERLAARADIPVIAAGGVRSVEDLELLKKL-GASGALVASALHDGGLTLEDVVR 233
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''- phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4- carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. Length = 233 |
| >gnl|CDD|240083 cd04732, HisA, HisA | Back alignment and domain information |
|---|
Score = 89.8 bits (224), Expect = 2e-20
Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 54/237 (22%)
Query: 299 KENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLT 358
+ + PVE+A+++ + GA + +++ G + +L +++ + + V +P+
Sbjct: 21 YDKKTVYSDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIV---KAVGIPVQ 77
Query: 359 VGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQ 418
VGGGIR SLE G ++ IG+ AV +++
Sbjct: 78 VGGGIR-----------SLEDIERLLDLGVSRVIIGTAAV------------KNPELVKE 114
Query: 419 ISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPI 478
+ + YG + +VV +D + +G+ G E +
Sbjct: 115 LLKEYGGERIVVGLDAK----------------------DGKVA------TKGWLETSEV 146
Query: 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVE 535
ELAK E+LG I+ I DG G + +L K ++ A IPVIAS G +++
Sbjct: 147 SLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLD 203
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''- phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. Length = 234 |
| >gnl|CDD|232779 TIGR00007, TIGR00007, phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 3e-19
Identities = 67/243 (27%), Positives = 103/243 (42%), Gaps = 59/243 (24%)
Query: 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTD 368
PVE A+++ +EGA+ I +++ G ++ G L V++ VP+ VGGGIR
Sbjct: 30 PVEAAKKWEEEGAERIHVVDLDGAKE---GGPVNLPVIKKIVRETGVPVQVGGGIR---- 82
Query: 369 ANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAV 428
SLE + G D++ IG+ AV ++++ + YG + +
Sbjct: 83 -------SLEDVEKLLDLGVDRVIIGTAAV------------ENPDLVKELLKEYGPERI 123
Query: 429 VVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVE 488
VVS+D R G E A V G E + ELAK +E
Sbjct: 124 VVSLDAR-----------------------GGEVA-----VKGWLEKSEVSLEELAKRLE 155
Query: 489 DLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDV--FRKTNA 546
+LG I+ I DG G + +L K + AV++PVIAS G V D+ +K
Sbjct: 156 ELGLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIAS---GGVSSIDDLIALKKLGV 212
Query: 547 SAA 549
Sbjct: 213 YGV 215
|
This protein family consists of HisA, phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, the enzyme catalyzing the fourth step in histidine biosynthesis. It is closely related to the enzyme HisF for the sixth step. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317) [Amino acid biosynthesis, Histidine family]. Length = 230 |
| >gnl|CDD|223184 COG0106, HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 4e-18
Identities = 58/238 (24%), Positives = 105/238 (44%), Gaps = 55/238 (23%)
Query: 298 TKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPL 357
E P+E+A+++ +GA+ + +++ G + G L+ ++ E VP+
Sbjct: 22 DYGKETVYSDDPLEVAKKWSDQGAEWLHLVDLDGAKA---GGPRNLEAIKEILEATDVPV 78
Query: 358 TVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLE 417
VGGGIR LE +G ++ IG+ AV ++ ++
Sbjct: 79 QVGGGIRS-----------LEDVEALLDAGVARVIIGTAAV---KN---------PDLVK 115
Query: 418 QISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRP 477
++ YG++ +VV++D R + V+G +E
Sbjct: 116 ELCEEYGDR-IVVALDARDGKVA----------------------------VSGWQEDSG 146
Query: 478 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVE 535
+ ELAK +E++G IL I DG G ++DL+K +++AV IPVIAS G +++
Sbjct: 147 VELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAVDIPVIASGGVSSLD 204
|
Length = 241 |
| >gnl|CDD|184165 PRK13585, PRK13585, 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 1e-16
Identities = 67/267 (25%), Positives = 115/267 (43%), Gaps = 64/267 (23%)
Query: 300 ENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTV 359
E + G PVE+A+++ GA+ + +++ G + G+ + + E V VP+ +
Sbjct: 25 GTETVSYGDPVEVAKRWVDAGAETLHLVDLDGAFE---GERKNAEAIEKIIEAVGVPVQL 81
Query: 360 GGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQI 419
GGGIR DA + G D++ +G+ AV E + ++
Sbjct: 82 GGGIRSAEDA-----------ASLLDLGVDRVILGTAAVENPE------------IVREL 118
Query: 420 SRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIG 479
S +G++ V+VS+D + +GE + G E
Sbjct: 119 SEEFGSERVMVSLDAK----------------------DGE------VVIKGWTEKTGYT 150
Query: 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSD 539
E AK E+LGAG IL +D +G +G + + +K + D+V IPVIAS G ++ D
Sbjct: 151 PVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLD---D 207
Query: 540 V--FRKTNASA-----ALAAGIFHRKE 559
+ ++ A+ AL G F +E
Sbjct: 208 LRALKEAGAAGVVVGSALYKGKFTLEE 234
|
Length = 241 |
| >gnl|CDD|237411 PRK13525, PRK13525, glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 5e-10
Identities = 60/194 (30%), Positives = 84/194 (43%), Gaps = 23/194 (11%)
Query: 58 GNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMD-VLNKTGMAEALCAY 116
G VR A+ LG +V+ PED+ + LI PG G + M +L G+ E L +
Sbjct: 11 GAVREHLAALEALGAEAVEVRRPEDLDEIDGLILPG-GE-STTMGKLLRDFGLLEPLREF 68
Query: 117 IEKDRPFLGICLGLQLLFQSSE-ENGPVNGLGLIPGVVGRFDSSNGF-RVPQIGWNALQI 174
I P G C G+ LL + E E LGL+ V R N F R Q+ + +
Sbjct: 69 IASGLPVFGTCAGMILL--AKEIEGYEQEHLGLLDITVRR----NAFGR--QVD--SFEA 118
Query: 175 TKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPE 234
D + L + F+ RA ++ V G +A VR+GN+ A FHPE
Sbjct: 119 ELDIKGLGE--PFPAVFI---RAPYIEEVGPGVEVLATVGGRIVA-VRQGNILATSFHPE 172
Query: 235 KSGDVGLSVLRRFL 248
+ D V R FL
Sbjct: 173 LTDD--TRVHRYFL 184
|
Length = 189 |
| >gnl|CDD|179108 PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 3e-09
Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 55/228 (24%)
Query: 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTD 368
PV A+ + +GA + +++ G + G L+++ + V +P+ VGGGIR
Sbjct: 32 PVAQAKAWEDQGAKWLHLVDLDGAKA---GKPVNLELIEAIVKAVDIPVQVGGGIRS--- 85
Query: 369 ANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAV 428
LE +G ++ IG+ AV E +++ + + + +
Sbjct: 86 --------LETVEALLDAGVSRVIIGTAAVKNPE------------LVKEACKKFPGK-I 124
Query: 429 VVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVE 488
VV +D R +G + +G E + A +LAK E
Sbjct: 125 VVGLDAR----------------------DG------KVATDGWLETSGVTAEDLAKRFE 156
Query: 489 DLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEH 536
D G I+ I DG G +++ + ++ AV IPVIAS G +++
Sbjct: 157 DAGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDD 204
|
Length = 233 |
| >gnl|CDD|153221 cd01750, GATase1_CobQ, Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ) | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 4e-09
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 50 VTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTG 108
+ ++ Y N + R G ++ V+ PE + +A+ +I PG + L K G
Sbjct: 1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPEGLGDADLIILPGSKDTIQDLAWLRKRG 60
Query: 109 MAEALCAYIEKDRPFLGICLGLQLLFQS------SEENGPVNGLGLIP 150
+AEA+ Y P LGIC G Q+L + E G + GLGL+
Sbjct: 61 LAEAIKNYARAGGPVLGICGGYQMLGKYIVDPEGVEGPGEIEGLGLLD 108
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ. Length = 194 |
| >gnl|CDD|153220 cd01749, GATase1_PB, Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 5e-09
Identities = 53/196 (27%), Positives = 72/196 (36%), Gaps = 57/196 (29%)
Query: 66 AIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLG 125
A+ LG + +V+TPED+ + LI PG G +L +TG+ + L +I +P G
Sbjct: 16 ALERLGVEVIEVRTPEDLEGIDGLIIPG-GESTTIGKLLRRTGLLDPLREFIRAGKPVFG 74
Query: 126 ICLGLQLLFQSSEENGPVNGLGLIPGVV-----GR------------FDSSNGF-----R 163
C GL LL + E+ G LGL+ V GR F R
Sbjct: 75 TCAGLILLAKEVEDQGGQPLLGLLDITVRRNAFGRQVDSFEADLDIPGLGLGPFPAVFIR 134
Query: 164 VPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRR 223
P I E+ V Y D I +VR+
Sbjct: 135 APVI----------EEVGPGVEVLAEY------------------------DGKIVAVRQ 160
Query: 224 GNVHAVQFHPEKSGDV 239
GNV A FHPE + D
Sbjct: 161 GNVLATSFHPELTDDT 176
|
Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6. Length = 183 |
| >gnl|CDD|223388 COG0311, PDX2, Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 49/185 (26%), Positives = 72/185 (38%), Gaps = 13/185 (7%)
Query: 58 GNVRSVRNAIRHLGFG-IKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAY 116
G V A+ G + +V+ PED+ + LI PG G +L + G+ E L +
Sbjct: 10 GAVEEHLEALEKAGGAEVVEVKRPEDLEGVDGLIIPG-GESTTIGRLLKRYGLLEPLREF 68
Query: 117 IEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK 176
I P G C GL LL + + LGL+ V R N F G
Sbjct: 69 IADGLPVFGTCAGLILLAKEILDGPEQPLLGLLDVTVRR----NAF-----GRQVDSFET 119
Query: 177 DSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKS 236
+ +I V RA ++ + V +A V++GN+ A FHPE +
Sbjct: 120 ELDIEGFGLPFPFPAVF-IRAPVIEEVGDGVEVLATLDGRIVA-VKQGNILATSFHPELT 177
Query: 237 GDVGL 241
D L
Sbjct: 178 DDTRL 182
|
Length = 194 |
| >gnl|CDD|163512 TIGR03800, PLP_synth_Pdx2, pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-08
Identities = 56/189 (29%), Positives = 82/189 (43%), Gaps = 28/189 (14%)
Query: 58 GNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYI 117
G VR A+ LG +V+ PE + + LI PG G +L+K GM E L +I
Sbjct: 9 GAVREHARALEALGVEGVEVKRPEQLDEIDGLIIPG-GESTTLSRLLDKYGMFEPLRNFI 67
Query: 118 EKDRPFLGICLGLQLLFQSSEENGPVNG-LGLIPGVVGRFDSSNGFRVPQIGWNALQITK 176
P G C GL +L + E G G LGL+ V R NA
Sbjct: 68 LSGLPVFGTCAGLIML--AKEIIGQKEGYLGLLDMTVER--------------NAYGRQV 111
Query: 177 DS---EI-LDDVGDHHV--YFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQ 230
DS E+ + VGD + F+ + + + + E ++ G+ +A VR+GN+
Sbjct: 112 DSFEAEVDIKGVGDDPITGVFIRAPKIVSVGNGVEILAK---VGNRIVA-VRQGNILVSS 167
Query: 231 FHPEKSGDV 239
FHPE + D
Sbjct: 168 FHPELTDDH 176
|
Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine]. Length = 184 |
| >gnl|CDD|201639 pfam01174, SNO, SNO glutamine amidotransferase family | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 7e-08
Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 20/185 (10%)
Query: 58 GNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYI 117
G V AI+ G K V+ PED+ + LI PG G A + + G E L ++
Sbjct: 6 GAVEEHEEAIKKCGAENKTVKRPEDLAQCDALIIPG-GESTAMSLLAKRYGFYEPLYEFV 64
Query: 118 EK-DRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK 176
++P G C GL LL + N V LGL+ V R N F G K
Sbjct: 65 HNPNKPIWGTCAGLILLSKQL-GNELVKTLGLLKVTVKR----NAF-----GRQVDSFEK 114
Query: 177 DSEILDDVGDHHVYFV---HSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHP 233
+ + + + F+ + + + D I ++GN+ A FHP
Sbjct: 115 ECDFKNLIPKFPGVFIRAPVIEEIL-DPEVVVVLYE----LDGKIVVAKQGNILATSFHP 169
Query: 234 EKSGD 238
E + D
Sbjct: 170 ELAED 174
|
This family and its amidotransferase domain was first described in. It is predicted that members of this family are involved in the pyridoxine biosynthetic pathway, based on the proximity and co-regulation of the corresponding genes and physical interaction between the members of pfam01174 and pfam01680. Length = 188 |
| >gnl|CDD|219513 pfam07685, GATase_3, CobB/CobQ-like glutamine amidotransferase domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-08
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 80 PEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ---- 135
+A+ +I PG + +L +G+ EAL + E P LGIC G Q+L +
Sbjct: 2 DALPGDADLVILPGGKPTIQDLALLRNSGLDEALREHAEAGGPILGICGGYQMLGETIID 61
Query: 136 ---SSEENGPVNGLGLIPGVV 153
+ V GLGL+
Sbjct: 62 GIEGTAGGERVEGLGLLDIET 82
|
Length = 157 |
| >gnl|CDD|237412 PRK13527, PRK13527, glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 3e-07
Identities = 52/201 (25%), Positives = 79/201 (39%), Gaps = 36/201 (17%)
Query: 62 SVRNAIRHLGFG--IKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEK 119
+++ A+ LG + +V+ P D+ + + LI PG G ++ + G+ + + IE+
Sbjct: 18 ALKRALDELGIDGEVVEVRRPGDLPDCDALIIPG-GESTTIGRLMKREGILDEIKEKIEE 76
Query: 120 DRPFLGICLGLQLLFQSSEENGPVNG------LGLIPGVVGRFDSSNGFRVPQIGWNALQ 173
P LG C GL LL + E LGL+ V R NA
Sbjct: 77 GLPILGTCAGLILL--AKEVGDDRVTKTEQPLLGLMDVTVKR--------------NAFG 120
Query: 174 ITKDS-----EILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHA 228
+DS ++ G H F+ RA V D +A V +GNV A
Sbjct: 121 RQRDSFEAEIDLSGLDGPFHAVFI---RAPAITKVGGDVEVLAKLDDRIVA-VEQGNVLA 176
Query: 229 VQFHPEKSGDVGLSVLRRFLH 249
FHPE + D + FL
Sbjct: 177 TAFHPELTDD--TRIHEYFLK 195
|
Length = 200 |
| >gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 35/139 (25%)
Query: 117 IEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK 176
+ +P LGICLG QLL ++ LG G VGR + G+ +IGW + +T+
Sbjct: 78 LAAGKPVLGICLGHQLLARA---------LG---GKVGR--NPKGW---EIGWFPVTLTE 120
Query: 177 DSE--ILDDVGDHHVYFVHSYRAMPSDDNKEWV----SSTCNYGDNFIASVRRG-NVHAV 229
+ L H + + V S C + R G +
Sbjct: 121 AGKADPLFAGLPDEFPVFHWHGDTVVELPPGAVLLASSEACP-----NQAFRYGDRALGL 175
Query: 230 QFHPEKSGDVGLSVLRRFL 248
QFHPE+ +LR FL
Sbjct: 176 QFHPEE------RLLRNFL 188
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 188 |
| >gnl|CDD|234838 PRK00784, PRK00784, cobyric acid synthase; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 3e-07
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 77 VQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLL--- 133
V+ E + +A+ +I PG A + L ++G EA+ A+ + P LGIC G Q+L
Sbjct: 282 VRPGEPLPDADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRR 341
Query: 134 ----FQSSEENGPVNGLGLIP 150
G V GLGL+
Sbjct: 342 IADPDGVEGAPGSVEGLGLLD 362
|
Length = 488 |
| >gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 6e-07
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 50 VTLLDYGAGN---VRSVRNAIRHLGF-------GIKDVQTPEDILNANRLIFPGVGAFAA 99
V +L +G + S +A+R G V++ D+ + + LI PG
Sbjct: 1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60
Query: 100 AMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLL 133
+ + L +P LGICLG QLL
Sbjct: 61 DLA--WDEALLALLREAAAAGKPVLGICLGAQLL 92
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92 |
| >gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 6e-07
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 50 VTLLDYGAGN---VRSVRNAIRHLGFGIK-------DVQTPEDILNANRLIFPGVGAFAA 99
V +L + + S +A+R G + V++ D+ + + LI PG
Sbjct: 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGG--PGT 58
Query: 100 AMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLF 134
D+ + L +P LGICLG QLL
Sbjct: 59 PDDLARDEALLALLREAAAAGKPILGICLGAQLLV 93
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115 |
| >gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 47/233 (20%), Positives = 70/233 (30%), Gaps = 63/233 (27%)
Query: 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDF 366
G PVELA+ + GAD I + + D +VL+ + +PL V I D
Sbjct: 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDK--EVLKEVAAETDLPLGVQLAINDA 69
Query: 367 TDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426
A ++ A GAD + I Y A + L+ + ++ +
Sbjct: 70 AAAVDIAAAAARAA------GADGVEIHGAVGYLAREDLEL--------IRELREAVPDV 115
Query: 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKA 486
VVV + P A A
Sbjct: 116 KVVVKLSPTGEL--------------------------------------------AAAA 131
Query: 487 VEDLGAGEILLNCIDCDGQGKGFD---MDLIKLISDAVSIPVIASSGAGAVEH 536
E+ G E+ L G G+ L+ L +PVIA G E
Sbjct: 132 AEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPED 184
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200 |
| >gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 32/145 (22%), Positives = 49/145 (33%), Gaps = 23/145 (15%)
Query: 108 GMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQI 167
G++ + + P LG+CLG Q + ++ G G V R + +I
Sbjct: 59 GISLEIIRALAGKVPILGVCLGHQAIAEA---------FG---GKVVRAPEPMHGKTSEI 106
Query: 168 GWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVR--RGN 225
V HS P + D I ++R
Sbjct: 107 -----HHDGSGLFKGLPQPFTVGRYHSLVVDPDPLPDLLEVTAST-EDGVIMALRHRDLP 160
Query: 226 VHAVQFHPEKS--GDVGLSVLRRFL 248
++ VQFHPE S + GL +L FL
Sbjct: 161 IYGVQFHPE-SILTEYGLRLLENFL 184
|
Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the presence of phosphoribosyl-anthranilate transferase (PRTase) activity. PRTase catalyses the second step in tryptophan biosynthesis and results in the addition of 5-phosphoribosyl-1-pyrophosphate to anthranilate to create N-5'-phosphoribosyl-anthranilate. In E.coli, the first step in the conversion of chorismate to PABA involves two proteins: PabA and PabB which co-operate to transfer the amide nitrogen of glutamine to chorismate forming 4-amino-4 deoxychorismate (ADC). PabA acts as a glutamine amidotransferase, supplying an amino group to PabB, which carries out the amination reaction. A third protein PabC then mediates elimination of pyruvate and aromatization to give PABA. Several organisms have bipartite proteins containing fused domains homologous to PabA and PabB commonly called PABA synthases. These hybrid PABA synthases may produce ADC and not PABA. Length = 184 |
| >gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 40/146 (27%), Positives = 57/146 (39%), Gaps = 29/146 (19%)
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
+ + +P LGICLG QLL LG G V R R +IGW
Sbjct: 69 KDLIKDAGVPGKPVLGICLGHQLL---------AKALG---GKVER----GPKR--EIGW 110
Query: 170 NALQIT-KDSEILDDVGDH--HVYFVHSYR--AMPSDDNKEWVSSTCNYGDNFIASVRRG 224
+++T D + + D V+ H +P S TC + R G
Sbjct: 111 TPVELTEGDDPLFAGLPDLFTTVFMSHGDTVVELPEGAVVLASSETCP-----NQAFRYG 165
Query: 225 -NVHAVQFHPEKSGDVGLSVLRRFLH 249
+ VQFHPE + + G ++L F H
Sbjct: 166 KRAYGVQFHPEVTHEYGEALLENFAH 191
|
Length = 198 |
| >gnl|CDD|224409 COG1492, CobQ, Cobyric acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 16/147 (10%)
Query: 27 IQNRVKFKSPRALSIRATSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNA 86
++ + RA+ I + D+ ++ V+ D+ +A
Sbjct: 240 LEQPKAGGNKRAIRIAVIRLPRISNFTDFDP--------LRAEPDVRVRFVKPGSDLRDA 291
Query: 87 NRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ-----SSEENG 141
+ +I PG A + +L + GM E + Y K +GIC G Q+L + S E
Sbjct: 292 DLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRRLKDPSGIEGA 351
Query: 142 P--VNGLGLIPGVVGRFDSSNGFRVPQ 166
GLGL+ V F RV
Sbjct: 352 KGEAEGLGLLD-VETCFAGGKTTRVVT 377
|
Length = 486 |
| >gnl|CDD|172156 PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 47/218 (21%), Positives = 79/218 (36%), Gaps = 61/218 (27%)
Query: 344 QVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAED 403
+ RLT++ + VGGGIR +YF +G + +G+ + +
Sbjct: 70 SLRRLTTK----DIEVGGGIRT-----------KSQIMDYFAAGINYCIVGTKGIQDTD- 113
Query: 404 YLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463
+LK + P R+Y++ + GE
Sbjct: 114 WLKE---------------------MAHTFPGRIYLS--------------VDAYGE--- 135
Query: 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSI 523
VNG E + + + + D+ G I+ I DG+ G + +L + A +I
Sbjct: 136 --DIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTI 193
Query: 524 PVIASSGAGAVEHFSDVFR--KTNASAALAAGIFHRKE 559
PVIAS G + H D+ R N AA+ H+
Sbjct: 194 PVIAS---GGIRHQQDIQRLASLNVHAAIIGKAAHQAS 228
|
Length = 234 |
| >gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha proteobacterial clade | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 4e-04
Identities = 49/225 (21%), Positives = 82/225 (36%), Gaps = 42/225 (18%)
Query: 35 SPRALSIRATSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP--EDILNANR---- 88
+P + + L+D+ V ++ N +R G + ++ E + R
Sbjct: 504 APTLPAAPRGGEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLV 563
Query: 89 LIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGL 148
++ PG G A DV A + A + + P G+CLGLQ
Sbjct: 564 VLSPGPGR-PADFDV------AGTIDAALARGLPVFGVCLGLQ----------------- 599
Query: 149 IPGVVGRFDSSNG-FRVPQIGWNA-LQITKDSEILDDVGDH-HVYFVHSYRAMPSDDNKE 205
G+V F + P G + +++ + + + V HS A E
Sbjct: 600 --GMVEAFGGALDVLPEPVHGKASRIRVLGPDALFAGLPERLTVGRYHSLFARRDRLPAE 657
Query: 206 WVSSTCNYGDNFIASV--RRGNVHAVQFHPEK----SGDVGLSVL 244
T D I ++ RR + AVQFHPE G GL+++
Sbjct: 658 LT-VTAESADGLIMAIEHRRLPLAAVQFHPESIMTLDGGAGLAMI 701
|
This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate [Amino acid biosynthesis, Aromatic amino acid family]. Length = 717 |
| >gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 33/143 (23%), Positives = 53/143 (37%), Gaps = 25/143 (17%)
Query: 111 EALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWN 170
A E P LGIC G+QL+ + G G VGR + + G
Sbjct: 61 RADEKIFELGVPVLGICYGMQLMAK-------QLG-----GEVGRAEK------REYGKA 102
Query: 171 ALQITKDSEILDDVGDHH-VYFVH--SYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVH 227
L+I + ++ + D V+ H + +P S C + ++
Sbjct: 103 ELEILDEDDLFRGLPDESTVWMSHGDKVKELPEGFKVLATSDNCPVA---AMAHEEKPIY 159
Query: 228 AVQFHPEKSGDV-GLSVLRRFLH 249
VQFHPE + G +L F++
Sbjct: 160 GVQFHPEVTHTEYGNELLENFVY 182
|
This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 188 |
| >gnl|CDD|132195 TIGR03151, enACPred_II, putative enoyl-[acyl-carrier-protein] reductase II | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 483 LAKAVEDLGAGEILLNCIDCDGQ-GKGFDMDLIKLISDAVSIPVIASSGAG 532
LAK +E GA ++ ++ G G+ M L+ + DAVSIPVIA+ G
Sbjct: 121 LAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIA 171
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. Length = 307 |
| >gnl|CDD|162719 TIGR02129, hisA_euk, phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 45/216 (20%), Positives = 76/216 (35%), Gaps = 53/216 (24%)
Query: 357 LTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSL 416
L VGGGI D A E+ GA + + S +L T K L
Sbjct: 79 LQVGGGIND------------TNAQEWLDEGASHVIVTS--------WLFTKGKFDLKRL 118
Query: 417 EQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGR 476
++I + G ++V + R+ ++ W + +
Sbjct: 119 KEIVSLVGKDRLIVDLSCRKT----------------------QDGRWIVAM----NKWQ 152
Query: 477 PIGAYEL-AKAVEDLGA--GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533
I EL A+ +E+L E L++ D +G KG D +L+ + + IP+ + GA +
Sbjct: 153 TITDLELNAETLEELSKYCDEFLIHAADVEGLCKGIDEELVSKLGEWSPIPITYAGGAKS 212
Query: 534 VEHFSDVFRKTNASAALAAG----IFHRKEVPIQSV 565
++ V + L G IF V
Sbjct: 213 IDDLDLVDELSKGKVDLTIGSALDIFGGNLVKFTDC 248
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut [Amino acid biosynthesis, Histidine family]. Length = 253 |
| >gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 0.004
Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 35/137 (25%)
Query: 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNG-FRVPQIGWNALQITKDSEI 180
P LGIC G+QL+ + LG G V R + + G L++ DS +
Sbjct: 77 PVLGICYGMQLM---------AHQLG---GKVER--AGKREY-----GRAELEVDNDSPL 117
Query: 181 LDDVGDHH-VYFVHSYR--AMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSG 237
+ + V+ H + +P + C IA+ R + VQFHPE
Sbjct: 118 FKGLPEEQDVWMSHGDKVTELPEGFKVIASTENCPIA--AIANEER-KFYGVQFHPE--- 171
Query: 238 DV-----GLSVLRRFLH 249
V G +L F+
Sbjct: 172 -VTHTPQGKKLLENFVF 187
|
Length = 511 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 578 | |||
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 100.0 | |
| KOG0623 | 541 | consensus Glutamine amidotransferase/cyclase [Amin | 100.0 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 100.0 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 100.0 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 100.0 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 100.0 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 100.0 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 100.0 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 100.0 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 100.0 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 100.0 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 100.0 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 100.0 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 100.0 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 100.0 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 100.0 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 100.0 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 100.0 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 100.0 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 100.0 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 100.0 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 100.0 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 100.0 | |
| COG0118 | 204 | HisH Glutamine amidotransferase [Amino acid transp | 100.0 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 100.0 | |
| CHL00188 | 210 | hisH imidazole glycerol phosphate synthase subunit | 100.0 | |
| PRK13142 | 192 | hisH imidazole glycerol phosphate synthase subunit | 100.0 | |
| PRK13152 | 201 | hisH imidazole glycerol phosphate synthase subunit | 99.98 | |
| PRK13170 | 196 | hisH imidazole glycerol phosphate synthase subunit | 99.98 | |
| PRK14004 | 210 | hisH imidazole glycerol phosphate synthase subunit | 99.97 | |
| PRK13146 | 209 | hisH imidazole glycerol phosphate synthase subunit | 99.97 | |
| PRK13181 | 199 | hisH imidazole glycerol phosphate synthase subunit | 99.97 | |
| cd01748 | 198 | GATase1_IGP_Synthase Type 1 glutamine amidotransfe | 99.97 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 99.96 | |
| PRK13141 | 205 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| TIGR01855 | 196 | IMP_synth_hisH imidazole glycerol phosphate syntha | 99.96 | |
| PRK13143 | 200 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| TIGR00888 | 188 | guaA_Nterm GMP synthase (glutamine-hydrolyzing), N | 99.93 | |
| COG0505 | 368 | CarA Carbamoylphosphate synthase small subunit [Am | 99.93 | |
| PRK06895 | 190 | putative anthranilate synthase component II; Provi | 99.93 | |
| COG0512 | 191 | PabA Anthranilate/para-aminobenzoate synthases com | 99.93 | |
| cd01742 | 181 | GATase1_GMP_Synthase Type 1 glutamine amidotransfe | 99.92 | |
| PLN02347 | 536 | GMP synthetase | 99.92 | |
| PLN02832 | 248 | glutamine amidotransferase subunit of pyridoxal 5' | 99.92 | |
| PRK00758 | 184 | GMP synthase subunit A; Validated | 99.92 | |
| PRK13525 | 189 | glutamine amidotransferase subunit PdxT; Provision | 99.91 | |
| PRK06774 | 191 | para-aminobenzoate synthase component II; Provisio | 99.91 | |
| PRK08007 | 187 | para-aminobenzoate synthase component II; Provisio | 99.91 | |
| PRK05670 | 189 | anthranilate synthase component II; Provisional | 99.91 | |
| PRK00074 | 511 | guaA GMP synthase; Reviewed | 99.91 | |
| CHL00101 | 190 | trpG anthranilate synthase component 2 | 99.91 | |
| PLN02335 | 222 | anthranilate synthase | 99.9 | |
| cd01743 | 184 | GATase1_Anthranilate_Synthase Type 1 glutamine ami | 99.9 | |
| PRK07649 | 195 | para-aminobenzoate/anthranilate synthase glutamine | 99.9 | |
| PRK05637 | 208 | anthranilate synthase component II; Provisional | 99.89 | |
| PRK07765 | 214 | para-aminobenzoate synthase component II; Provisio | 99.89 | |
| TIGR00566 | 188 | trpG_papA glutamine amidotransferase of anthranila | 99.89 | |
| TIGR01815 | 717 | TrpE-clade3 anthranilate synthase, alpha proteobac | 99.89 | |
| COG0518 | 198 | GuaA GMP synthase - Glutamine amidotransferase dom | 99.89 | |
| PRK12564 | 360 | carbamoyl phosphate synthase small subunit; Review | 99.89 | |
| PRK08857 | 193 | para-aminobenzoate synthase component II; Provisio | 99.88 | |
| PF00117 | 192 | GATase: Glutamine amidotransferase class-I; InterP | 99.88 | |
| TIGR01368 | 358 | CPSaseIIsmall carbamoyl-phosphate synthase, small | 99.88 | |
| PRK13566 | 720 | anthranilate synthase; Provisional | 99.88 | |
| cd01749 | 183 | GATase1_PB Glutamine Amidotransferase (GATase_I) i | 99.87 | |
| PRK12838 | 354 | carbamoyl phosphate synthase small subunit; Review | 99.87 | |
| KOG0370 | 1435 | consensus Multifunctional pyrimidine synthesis pro | 99.87 | |
| CHL00197 | 382 | carA carbamoyl-phosphate synthase arginine-specifi | 99.86 | |
| PRK06490 | 239 | glutamine amidotransferase; Provisional | 99.86 | |
| TIGR03800 | 184 | PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl | 99.85 | |
| cd01744 | 178 | GATase1_CPSase Small chain of the glutamine-depend | 99.85 | |
| PLN02771 | 415 | carbamoyl-phosphate synthase (glutamine-hydrolyzin | 99.84 | |
| PRK09522 | 531 | bifunctional glutamine amidotransferase/anthranila | 99.84 | |
| PRK07053 | 234 | glutamine amidotransferase; Provisional | 99.83 | |
| PRK13527 | 200 | glutamine amidotransferase subunit PdxT; Provision | 99.83 | |
| KOG3055 | 263 | consensus Phosphoribosylformimino-5-aminoimidazole | 99.83 | |
| COG2071 | 243 | Predicted glutamine amidotransferases [General fun | 99.83 | |
| PRK05665 | 240 | amidotransferase; Provisional | 99.83 | |
| PRK09065 | 237 | glutamine amidotransferase; Provisional | 99.82 | |
| PLN02889 | 918 | oxo-acid-lyase/anthranilate synthase | 99.81 | |
| TIGR01823 | 742 | PabB-fungal aminodeoxychorismate synthase, fungal | 99.81 | |
| PRK13526 | 179 | glutamine amidotransferase subunit PdxT; Provision | 99.81 | |
| cd01741 | 188 | GATase1_1 Subgroup of proteins having the Type 1 g | 99.81 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 99.8 | |
| PRK14607 | 534 | bifunctional glutamine amidotransferase/anthranila | 99.8 | |
| PRK08250 | 235 | glutamine amidotransferase; Provisional | 99.8 | |
| PRK06186 | 229 | hypothetical protein; Validated | 99.8 | |
| cd01750 | 194 | GATase1_CobQ Type 1 glutamine amidotransferase (GA | 99.8 | |
| COG0311 | 194 | PDX2 Predicted glutamine amidotransferase involved | 99.79 | |
| PRK11366 | 254 | puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; | 99.78 | |
| KOG0026 | 223 | consensus Anthranilate synthase, beta chain [Amino | 99.77 | |
| PRK07567 | 242 | glutamine amidotransferase; Provisional | 99.77 | |
| PF01174 | 188 | SNO: SNO glutamine amidotransferase family; InterP | 99.77 | |
| cd03130 | 198 | GATase1_CobB Type 1 glutamine amidotransferase (GA | 99.76 | |
| TIGR01737 | 227 | FGAM_synth_I phosphoribosylformylglycinamidine syn | 99.76 | |
| cd01745 | 189 | GATase1_2 Subgroup of proteins having the Type 1 g | 99.75 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 99.74 | |
| PF07722 | 217 | Peptidase_C26: Peptidase C26; InterPro: IPR011697 | 99.73 | |
| KOG1622 | 552 | consensus GMP synthase [Nucleotide transport and m | 99.72 | |
| TIGR00337 | 525 | PyrG CTP synthase. CTP synthase is involved in pyr | 99.71 | |
| PRK03619 | 219 | phosphoribosylformylglycinamidine synthase I; Prov | 99.71 | |
| PRK05380 | 533 | pyrG CTP synthetase; Validated | 99.7 | |
| cd01747 | 273 | GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot | 99.69 | |
| cd01746 | 235 | GATase1_CTP_Synthase Type 1 glutamine amidotransfe | 99.68 | |
| TIGR00379 | 449 | cobB cobyrinic acid a,c-diamide synthase. This mod | 99.66 | |
| PRK13896 | 433 | cobyrinic acid a,c-diamide synthase; Provisional | 99.64 | |
| PRK01077 | 451 | cobyrinic acid a,c-diamide synthase; Validated | 99.64 | |
| COG0504 | 533 | PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide | 99.63 | |
| PLN02327 | 557 | CTP synthase | 99.62 | |
| PRK00784 | 488 | cobyric acid synthase; Provisional | 99.62 | |
| KOG1224 | 767 | consensus Para-aminobenzoate (PABA) synthase ABZ1 | 99.61 | |
| KOG3179 | 245 | consensus Predicted glutamine synthetase [Nucleoti | 99.58 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 99.57 | |
| PF07685 | 158 | GATase_3: CobB/CobQ-like glutamine amidotransferas | 99.55 | |
| COG1797 | 451 | CobB Cobyrinic acid a,c-diamide synthase [Coenzyme | 99.54 | |
| PRK06278 | 476 | cobyrinic acid a,c-diamide synthase; Validated | 99.52 | |
| TIGR00313 | 475 | cobQ cobyric acid synthase CobQ. | 99.51 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 99.48 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 99.48 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 99.46 | |
| PRK01175 | 261 | phosphoribosylformylglycinamidine synthase I; Prov | 99.46 | |
| COG0047 | 231 | PurL Phosphoribosylformylglycinamidine (FGAM) synt | 99.46 | |
| COG1492 | 486 | CobQ Cobyric acid synthase [Coenzyme metabolism] | 99.45 | |
| KOG3210 | 226 | consensus Imidazoleglycerol-phosphate synthase sub | 99.44 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 99.43 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 99.39 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 99.38 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.37 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 99.37 | |
| COG3442 | 250 | Predicted glutamine amidotransferase [General func | 99.37 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.35 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 99.34 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 99.29 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 99.29 | |
| cd01740 | 238 | GATase1_FGAR_AT Type 1 glutamine amidotransferase | 99.28 | |
| KOG2387 | 585 | consensus CTP synthase (UTP-ammonia lyase) [Nucleo | 99.27 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 99.23 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 99.22 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 99.2 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 99.19 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.19 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 99.17 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 99.17 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 99.16 | |
| PF13507 | 259 | GATase_5: CobB/CobQ-like glutamine amidotransferas | 99.15 | |
| PRK05368 | 302 | homoserine O-succinyltransferase; Provisional | 99.14 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.13 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 99.1 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.1 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 99.09 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 99.09 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 99.06 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.03 | |
| KOG1559 | 340 | consensus Gamma-glutamyl hydrolase [Coenzyme trans | 99.02 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 99.01 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 99.01 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 99.0 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.99 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 98.97 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 98.95 | |
| TIGR01857 | 1239 | FGAM-synthase phosphoribosylformylglycinamidine sy | 98.94 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 98.93 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 98.91 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 98.9 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.88 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 98.87 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 98.83 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 98.8 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 98.78 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 98.77 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 98.74 | |
| PLN03206 | 1307 | phosphoribosylformylglycinamidine synthase; Provis | 98.74 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 98.73 | |
| TIGR01735 | 1310 | FGAM_synt phosphoribosylformylglycinamidine syntha | 98.73 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 98.72 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 98.71 | |
| PRK05297 | 1290 | phosphoribosylformylglycinamidine synthase; Provis | 98.71 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 98.67 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 98.66 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 98.65 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 98.64 | |
| cd03146 | 212 | GAT1_Peptidase_E Type 1 glutamine amidotransferase | 98.62 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 98.61 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 98.61 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 98.6 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 98.59 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 98.59 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 98.59 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 98.58 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 98.57 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 98.55 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 98.54 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 98.51 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 98.49 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 98.48 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 98.47 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 98.46 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 98.45 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 98.43 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 98.43 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 98.43 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 98.42 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 98.41 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 98.41 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 98.38 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 98.38 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 98.38 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 98.37 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 98.37 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 98.36 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 98.36 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 98.35 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 98.35 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 98.34 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 98.34 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 98.29 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.29 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 98.28 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 98.28 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 98.27 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 98.26 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 98.25 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 98.25 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 98.25 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 98.23 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 98.22 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.21 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 98.2 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 98.2 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 98.19 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 98.19 | |
| PHA03366 | 1304 | FGAM-synthase; Provisional | 98.19 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 98.19 | |
| TIGR01739 | 1202 | tegu_FGAM_synt herpesvirus tegument protein/v-FGAM | 98.19 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 98.19 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 98.17 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 98.17 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 98.17 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 98.15 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.15 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.13 | |
| PRK05282 | 233 | (alpha)-aspartyl dipeptidase; Validated | 98.12 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 98.11 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 98.11 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 98.11 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 98.1 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 98.1 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 98.09 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 98.09 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 98.09 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.08 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 98.08 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 98.08 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 98.07 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 98.07 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 98.04 | |
| cd01653 | 115 | GATase1 Type 1 glutamine amidotransferase (GATase1 | 98.03 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 98.01 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 97.98 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 97.97 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 97.97 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 97.96 | |
| PLN02591 | 250 | tryptophan synthase | 97.94 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 97.94 | |
| cd03128 | 92 | GAT_1 Type 1 glutamine amidotransferase (GATase1)- | 97.9 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 97.9 | |
| cd03144 | 114 | GATase1_ScBLP_like Type 1 glutamine amidotransfera | 97.86 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 97.86 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 97.85 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 97.85 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 97.83 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 97.83 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 97.82 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 97.81 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 97.81 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 97.79 | |
| PRK08005 | 210 | epimerase; Validated | 97.78 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 97.78 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 97.77 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 97.76 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 97.76 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 97.76 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 97.73 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 97.7 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.68 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 97.68 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 97.68 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 97.66 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 97.64 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 97.64 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 97.64 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 97.64 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 97.64 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 97.61 | |
| KOG2333 | 614 | consensus Uncharacterized conserved protein [Gener | 97.6 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 97.59 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 97.58 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 97.56 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 97.56 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 97.55 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 97.54 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 97.54 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 97.54 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 97.54 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.51 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 97.51 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 97.49 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 97.49 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 97.49 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 97.49 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 97.48 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 97.48 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 97.46 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 97.46 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 97.45 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 97.44 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 97.43 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 97.41 | |
| TIGR01382 | 166 | PfpI intracellular protease, PfpI family. The memb | 97.41 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 97.41 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 97.41 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 97.39 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 97.39 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 97.39 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 97.39 | |
| PRK14057 | 254 | epimerase; Provisional | 97.38 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 97.37 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 97.36 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 97.35 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 97.35 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 97.35 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 97.35 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 97.3 | |
| PLN02535 | 364 | glycolate oxidase | 97.3 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 97.28 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 97.27 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 97.27 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 97.26 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 97.24 | |
| cd03169 | 180 | GATase1_PfpI_1 Type 1 glutamine amidotransferase ( | 97.24 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 97.23 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 97.22 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 97.22 | |
| KOG0623 | 541 | consensus Glutamine amidotransferase/cyclase [Amin | 97.2 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 97.18 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 97.18 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 97.17 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 97.17 | |
| cd03134 | 165 | GATase1_PfpI_like A type 1 glutamine amidotransfer | 97.17 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 97.17 | |
| cd03132 | 142 | GATase1_catalase Type 1 glutamine amidotransferase | 97.17 | |
| cd03133 | 213 | GATase1_ES1 Type 1 glutamine amidotransferase (GAT | 97.16 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 97.16 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 97.16 | |
| cd03129 | 210 | GAT1_Peptidase_E_like Type 1 glutamine amidotransf | 97.13 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 97.13 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 97.13 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 97.1 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.1 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 97.1 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 97.1 | |
| PF04204 | 298 | HTS: Homoserine O-succinyltransferase ; InterPro: | 97.09 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 97.09 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 97.09 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.08 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 97.08 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 97.07 | |
| PLN02591 | 250 | tryptophan synthase | 97.04 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 97.04 | |
| cd03131 | 175 | GATase1_HTS Type 1 glutamine amidotransferase (GAT | 97.03 | |
| cd03147 | 231 | GATase1_Ydr533c_like Type 1 glutamine amidotransfe | 97.03 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 97.01 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 96.99 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 96.98 | |
| PRK11780 | 217 | isoprenoid biosynthesis protein with amidotransfer | 96.96 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 96.93 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 96.92 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 96.91 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 96.89 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 96.87 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 96.87 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 96.86 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 96.86 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 96.86 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 96.83 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 96.82 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 96.77 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 96.76 | |
| PF03575 | 154 | Peptidase_S51: Peptidase family S51; InterPro: IPR | 96.76 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 96.75 | |
| cd03138 | 195 | GATase1_AraC_2 AraC transcriptional regulators hav | 96.73 | |
| PF09825 | 367 | BPL_N: Biotin-protein ligase, N terminal; InterPro | 96.73 | |
| cd03135 | 163 | GATase1_DJ-1 Type 1 glutamine amidotransferase (GA | 96.73 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 96.72 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 96.72 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 96.72 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 96.68 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 96.67 | |
| cd03140 | 170 | GATase1_PfpI_3 Type 1 glutamine amidotransferase ( | 96.66 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 96.66 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 96.66 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 96.65 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 96.63 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 96.61 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 96.58 | |
| COG0693 | 188 | ThiJ Putative intracellular protease/amidase [Gene | 96.58 | |
| cd03137 | 187 | GATase1_AraC_1 AraC transcriptional regulators hav | 96.58 | |
| TIGR01383 | 179 | not_thiJ DJ-1 family protein. This model represent | 96.55 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 96.54 | |
| PF01965 | 147 | DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T | 96.54 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.53 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 96.53 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 96.47 | |
| PRK04155 | 287 | chaperone protein HchA; Provisional | 96.46 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 96.46 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 96.45 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 96.45 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 96.42 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 96.39 | |
| PLN02979 | 366 | glycolate oxidase | 96.38 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 96.37 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 96.34 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 96.32 | |
| PRK11574 | 196 | oxidative-stress-resistance chaperone; Provisional | 96.29 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 96.29 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 96.28 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 96.26 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 96.26 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 96.26 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 96.23 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 96.23 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.22 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 96.2 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 96.17 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 96.16 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 96.12 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 96.1 | |
| PF13278 | 166 | DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M | 96.1 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 96.09 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 96.08 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 96.06 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 96.05 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 96.04 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 96.04 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 96.03 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 96.01 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 96.01 | |
| cd03136 | 185 | GATase1_AraC_ArgR_like AraC transcriptional regula | 96.0 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 96.0 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 95.99 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 95.98 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 95.97 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 95.96 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 95.93 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 95.92 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 95.9 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 95.89 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 95.87 | |
| KOG1907 | 1320 | consensus Phosphoribosylformylglycinamidine syntha | 95.87 | |
| cd03139 | 183 | GATase1_PfpI_2 Type 1 glutamine amidotransferase ( | 95.83 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 95.82 | |
| PRK13958 | 207 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 95.74 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 95.74 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 95.72 | |
| cd03145 | 217 | GAT1_cyanophycinase Type 1 glutamine amidotransfer | 95.72 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 95.71 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 95.71 | |
| cd03141 | 221 | GATase1_Hsp31_like Type 1 glutamine amidotransfera | 95.71 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 95.69 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 95.69 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 95.66 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 95.65 | |
| COG3340 | 224 | PepE Peptidase E [Amino acid transport and metabol | 95.64 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.64 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 95.6 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 95.56 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 95.53 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 95.49 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 95.48 | |
| PRK14057 | 254 | epimerase; Provisional | 95.47 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 95.46 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 95.46 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 95.46 | |
| cd03148 | 232 | GATase1_EcHsp31_like Type 1 glutamine amidotransfe | 95.44 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 95.41 | |
| PRK08005 | 210 | epimerase; Validated | 95.39 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 95.38 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 95.37 | |
| TIGR00381 | 389 | cdhD CO dehydrogenase/acetyl-CoA synthase, delta s | 95.35 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 95.3 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 95.28 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 95.26 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 95.24 | |
| KOG2764 | 247 | consensus Putative transcriptional regulator DJ-1 | 95.24 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 95.17 | |
| PRK11249 | 752 | katE hydroperoxidase II; Provisional | 95.16 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 95.16 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 95.15 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 95.14 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 95.12 |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-95 Score=790.94 Aligned_cols=533 Identities=84% Similarity=1.324 Sum_probs=472.7
Q ss_pred CCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEE
Q 045794 46 SDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLG 125 (578)
Q Consensus 46 ~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlG 125 (578)
..++|+|+||++||..++.++|+++|+++.+++.++++.++|+|||||++++...+.++...++.+.|+++++.++|+||
T Consensus 5 ~~~~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~~~~l~~~D~lIlpG~gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLG 84 (538)
T PLN02617 5 ADSEVTLLDYGAGNVRSVRNAIRHLGFTIKDVQTPEDILNADRLIFPGVGAFGSAMDVLNNRGMAEALREYIQNDRPFLG 84 (538)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHCCCeEEEECChhhhccCCEEEECCCCCHHHHHHHHHHcCHHHHHHHHHHcCCCEEE
Confidence 45679999999999999999999999999999988889999999999999887777777766788999999999999999
Q ss_pred EechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCC
Q 045794 126 ICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKE 205 (578)
Q Consensus 126 IClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~ 205 (578)
||+|||+|+.++.|++...|+|++++++.++........|++||+.+....+++++.+++...+|++|++++...+....
T Consensus 85 IC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~~V~~~~~spL~~~l~~~~vy~vHSy~v~~~p~~~~ 164 (538)
T PLN02617 85 ICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQITKDSELLDGVGGRHVYFVHSYRATPSDENKD 164 (538)
T ss_pred ECHHHHHHhhhhhhcCCccCcccccceEEECCccCCCCCCeecceEEEecCCChhHhcCCCcEEEEEeEEEEEecCCCCc
Confidence 99999999998777667889999999998874332356789999999998888999888777889999999766555445
Q ss_pred cEEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccCCCCCCC-cccccccceeEEEeeeEeecCCCCE
Q 045794 206 WVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPT-EGKALKLAKRVIACLDVRANDKGDL 284 (578)
Q Consensus 206 ~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~~~~~~-~~~~~~~~~riIp~iDl~~~~~g~~ 284 (578)
++.++..++++++++++++++||+|||||.+...+..+|++|++.+.......+ ..+...+++|||||||++.+++|..
T Consensus 165 ~v~a~~~~g~~~IaAI~~gnI~GVQFHPE~s~~~G~~L~~nFl~~~~~~~~~~~~~~~~~~l~~riip~l~v~~~~~g~~ 244 (538)
T PLN02617 165 WVLATCNYGGEFIASVRKGNVHAVQFHPEKSGATGLSILRRFLEPKSSATQKPTEGKASKSLAKRVIACLDVRSNDKGDL 244 (538)
T ss_pred EEEEEEccCCCcEEEEEeCCEEEEEcCCccCchhHHHHHHHHHHhhhhhhcCccccccccCccceEEEEEEeecCCCCce
Confidence 566677777789999999999999999999877888999999988875533211 1223678899999999995433777
Q ss_pred EEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCcc
Q 045794 285 VVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIR 364 (578)
Q Consensus 285 v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir 364 (578)
|+|||.+|++|+.......++.+||+++|++|+++||||||++||++++.+...+..++++|+++++++++|+++|||||
T Consensus 245 ~v~kg~~f~~~~~~~~~~~~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr 324 (538)
T PLN02617 245 VVTKGDQYDVREHSEGREVRNLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIR 324 (538)
T ss_pred EEeecccccccccccccCCCcCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCcc
Confidence 79999999888876555778899999999999999999999999999876666778899999999999999999999999
Q ss_pred ccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCc
Q 045794 365 DFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPND 444 (578)
Q Consensus 365 ~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~ 444 (578)
++||+||+-+|.+|+++++|++|||||+|||+|++++++|+..++++||+++++++++||+|+|++|||+|++++..|..
T Consensus 325 ~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~ 404 (538)
T PLN02617 325 DFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSD 404 (538)
T ss_pred ccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccc
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999875433444
Q ss_pred cccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCc
Q 045794 445 VEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIP 524 (578)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ip 524 (578)
..+.++++.+.+++|+.+.||+|+++||++.+++++++|+++++++|+++|++|++++|||++|+|+++++.+++.+++|
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G~d~~l~~~v~~~~~ip 484 (538)
T PLN02617 405 VPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIELVKLVSDAVTIP 484 (538)
T ss_pred cccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeeccccccccCcCHHHHHHHHhhCCCC
Confidence 45556666665666766778999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeecC
Q 045794 525 VIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578 (578)
Q Consensus 525 VIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~~ 578 (578)
||||||+++++|+.++++..|+++++.|+.||++++++.++|++|+++||+||+
T Consensus 485 viasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~vr~ 538 (538)
T PLN02617 485 VIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIETRI 538 (538)
T ss_pred EEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHHCCCccCC
Confidence 999999999999999998788999999999999999999999999999999985
|
|
| >KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-87 Score=661.25 Aligned_cols=530 Identities=70% Similarity=1.172 Sum_probs=494.9
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
++|.++||+.||..++..+|+.+|+++..+..+.|+.+.|-+|+||-+++.+.++.+...++.+.|+++++.++|++|||
T Consensus 2 ~vv~~ld~~agn~~si~nal~hlg~~i~~v~~P~DI~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgic 81 (541)
T KOG0623|consen 2 SVVTLLDYGAGNVRSIRNALRHLGFSIKDVQTPGDILNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGIC 81 (541)
T ss_pred ceEEEEecCCccHHHHHHHHHhcCceeeeccCchhhccCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcCCCeEeeh
Confidence 46889999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCC---CCC
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSD---DNK 204 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~---~~~ 204 (578)
.|+|+|-..+.|+....|||++|+.+.+|+.. ...+||+||+...+..++.+|...+.-+.|++|+|.....+ ++.
T Consensus 82 vGlQaLF~gSvE~p~skGLgvipg~v~RFD~s-~k~VPhIGWNsc~v~sd~effg~~p~~~~YFVHSyl~~ek~~~len~ 160 (541)
T KOG0623|consen 82 VGLQALFDGSVENPPSKGLGVIPGIVGRFDAS-AKIVPHIGWNSCQVGSDSEFFGDVPNRHVYFVHSYLNREKPKSLENK 160 (541)
T ss_pred hhHHHHhcccccCCCcCcccccccceecccCC-CCcCCcccccccccCCcccccccCCCceEEEEeeecccccccCCCCC
Confidence 99999999888888889999999999999876 45589999999988888888877778899999999654433 345
Q ss_pred CcEEEEeecCC-ceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccCC-----CCCCCcccccccceeEEEeeeEee
Q 045794 205 EWVSSTCNYGD-NFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNI-----PKKPTEGKALKLAKRVIACLDVRA 278 (578)
Q Consensus 205 ~~~~~~~~~~d-~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~-----~~~~~~~~~~~~~~riIp~iDl~~ 278 (578)
.|..++.+++. .++.+++..|++++|||||.++..++..+++|+.+-.-. +.++.+++...+.+|||.|+|++.
T Consensus 161 ~wkiat~kYG~E~Fi~ai~knN~~AtQFHPEKSG~aGL~vl~~FL~~~~ppips~e~~kl~en~~sgLtkRiIACLDVRt 240 (541)
T KOG0623|consen 161 DWKIATCKYGSESFISAIRKNNVHATQFHPEKSGEAGLSVLRRFLHQQSPPIPSAETQKLMENKASGLTKRIIACLDVRT 240 (541)
T ss_pred CceEeeeccCcHHHHHHHhcCceeeEecccccccchhHHHHHHHHhccCCCCCchhhhhhhhccchhhhhhheeeeeeec
Confidence 68889988874 778888889999999999999999999999999833211 223345666678899999999999
Q ss_pred cCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEE
Q 045794 279 NDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLT 358 (578)
Q Consensus 279 ~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~ 358 (578)
||.|.+|++||+++++|+-...+++++.+.|+++|++|++.||||+.++++..+++++.+..++++++++.++.+++|++
T Consensus 241 ND~GDLVVTKGDQYDVREkS~g~eVRNLGKPV~Laq~Yyq~GADEv~FLNITsFRdcPl~D~PMlqVL~qaaktVFVPLT 320 (541)
T KOG0623|consen 241 NDKGDLVVTKGDQYDVREKSNGNEVRNLGKPVDLAQQYYQDGADEVSFLNITSFRDCPLGDLPMLQVLRQAAKTVFVPLT 320 (541)
T ss_pred cCCCceEEecCcccchhhccCchhhhccCChHHHHHHHHhcCCceeEEEeeccccCCCcccChHHHHHHHhhceEEEEEe
Confidence 99999999999999999888788999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhcccc-CCchHHHHHHHhCCCCeEEEEEecccc
Q 045794 359 VGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVK-TGKSSLEQISRVYGNQAVVVSIDPRRV 437 (578)
Q Consensus 359 ~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~iv~slD~~~~ 437 (578)
+|||||++.|++|+-+|++|.+..|+..|||+|.|||.++...++|.+.|++ ++...|+.|++.||.|++++|+|.|+.
T Consensus 321 VGGGIrD~~D~dGt~~palEVA~~YFRSGADKvSIGsDAVyAAEkyye~G~k~~Gks~iEtISkaYGnQAVViSvDPkRv 400 (541)
T KOG0623|consen 321 VGGGIRDFTDADGTYYPALEVAAEYFRSGADKVSIGSDAVYAAEKYYESGVKGTGKSSIETISKAYGNQAVVISVDPKRV 400 (541)
T ss_pred ecCcccccccCCCcCchhHHHHHHHHhcCCceeeechhHHHHHHHHHHhccCCCCcChHHHHHHHhCCeeEEEEeCCcee
Confidence 9999999999999999999999999999999999999999988889999999 999999999999999999999999999
Q ss_pred ccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 045794 438 YITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLI 517 (578)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l 517 (578)
++.||.|..++.++++..||||++|+||+++++|+++..+++.+|+.+.++++|+++|+++.|+.||..+|+|+++++.+
T Consensus 401 YVn~p~Dtk~kV~~t~~pGPNGE~YcWYQCTvkGGRE~Rdigv~ELtrAcEalGAGEiLLNCiD~DGsn~GyDieLv~lv 480 (541)
T KOG0623|consen 401 YVNHPDDTKYKVIRTTNPGPNGEEYCWYQCTVKGGREGRDIGVFELTRACEALGAGEILLNCIDCDGSNKGYDIELVKLV 480 (541)
T ss_pred eecCCccCcceEEEecCCCCCCceeEEEEEEEcCCcccCccchhhHHHHHHHhCcchheeeeeccCCCCCCcchhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeecC
Q 045794 518 SDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578 (578)
Q Consensus 518 ~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~~ 578 (578)
+..++||||||.|.+.++++.++++++.|++++.+-+||.++.+++++|++|...+|.||+
T Consensus 481 kdsV~IPVIASSGAG~P~HFeEvF~kT~adAaLaAGiFHR~e~~i~dVKEyL~eh~i~VR~ 541 (541)
T KOG0623|consen 481 KDSVGIPVIASSGAGTPDHFEEVFEKTNADAALAAGIFHRKEVPIQDVKEYLQEHRIEVRI 541 (541)
T ss_pred hcccCCceEecCCCCCcHHHHHHHHhcCchhhhhccceecCccchHHHHHHHHhhceeecC
Confidence 9999999999999999999999999999999999999999999999999999999999985
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=445.65 Aligned_cols=255 Identities=51% Similarity=0.837 Sum_probs=241.3
Q ss_pred ccceeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHH
Q 045794 265 KLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQ 344 (578)
Q Consensus 265 ~~~~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~ 344 (578)
|+.+|||||||++ +|+ +|||.+|. ..++.|||+++|++|+++|||||.|+|+++..+ ++..+++
T Consensus 1 mL~kRIIPCLDVk---~Gr--VVKGv~F~--------~lrd~GDpVelA~~Y~e~GADElvFlDItAs~~---gr~~~~~ 64 (256)
T COG0107 1 MLAKRIIPCLDVK---DGR--VVKGVNFK--------NLRDAGDPVELAKRYNEEGADELVFLDITASSE---GRETMLD 64 (256)
T ss_pred CCcceeEeeEEcc---CCE--EEeccccc--------chhhcCChHHHHHHHHHcCCCeEEEEecccccc---cchhHHH
Confidence 7899999999999 896 67999987 888899999999999999999999999999744 5688999
Q ss_pred HHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCC
Q 045794 345 VLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG 424 (578)
Q Consensus 345 ~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (578)
+|++.++.+++|++||||||++|| ++++|.+|||||.|+|+|+.+ |+++.+++++||
T Consensus 65 vv~r~A~~vfiPltVGGGI~s~eD-----------~~~ll~aGADKVSINsaAv~~------------p~lI~~~a~~FG 121 (256)
T COG0107 65 VVERVAEQVFIPLTVGGGIRSVED-----------ARKLLRAGADKVSINSAAVKD------------PELITEAADRFG 121 (256)
T ss_pred HHHHHHhhceeeeEecCCcCCHHH-----------HHHHHHcCCCeeeeChhHhcC------------hHHHHHHHHHhC
Confidence 999999999999999999999987 999999999999999999995 589999999999
Q ss_pred CCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 425 NQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 425 ~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
+||||+|||+|+.+ +| ++.||+|+++|+++.+++++++|+++++++|++||++|.+++||
T Consensus 122 sQciVvaIDakr~~-------------------~g-~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DG 181 (256)
T COG0107 122 SQCIVVAIDAKRVP-------------------DG-ENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDG 181 (256)
T ss_pred CceEEEEEEeeecc-------------------CC-CCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccc
Confidence 99999999999852 24 35789999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeecC
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~~ 578 (578)
+.+|+|+++++.+++.+++|||||||.++++|+.+++.+..+++++.+|.||++++++.++|+||.++||+||+
T Consensus 182 tk~GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~~~i~evK~yL~~~gi~VR~ 255 (256)
T COG0107 182 TKAGYDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGEITIGEVKEYLAEQGIEVRL 255 (256)
T ss_pred cccCcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCcccHHHHHHHHHHcCCCccc
Confidence 99999999999999999999999999999999999998677999999999999999999999999999999985
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-52 Score=401.93 Aligned_cols=237 Identities=26% Similarity=0.469 Sum_probs=220.5
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
|.||||||++ +|+|| +++|++ + +...+..||+++|+.|.++||+++|++|||++..+ ...|.++|
T Consensus 2 ~~iiPAIDl~---~G~~VRL~qGd~-~-------~~~~y~~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g---~~~n~~~i 67 (241)
T COG0106 2 MIIIPAIDLK---DGKVVRLVQGDY-G-------KETVYSDDPLEVAKKWSDQGAEWLHLVDLDGAKAG---GPRNLEAI 67 (241)
T ss_pred ceEEEeEEee---CCEEEEeecccC-C-------cceEecCCHHHHHHHHHHcCCcEEEEeeccccccC---CcccHHHH
Confidence 6899999999 99999 999987 3 35567789999999999999999999999998754 36689999
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
++|.+++++|||+||||||.++ ++.|+++|++||++||.++++ |++++++.++|| +
T Consensus 68 ~~i~~~~~~~vQvGGGIRs~~~-----------v~~ll~~G~~rViiGt~av~~------------p~~v~~~~~~~g-~ 123 (241)
T COG0106 68 KEILEATDVPVQVGGGIRSLED-----------VEALLDAGVARVIIGTAAVKN------------PDLVKELCEEYG-D 123 (241)
T ss_pred HHHHHhCCCCEEeeCCcCCHHH-----------HHHHHHCCCCEEEEecceecC------------HHHHHHHHHHcC-C
Confidence 9999999999999999999876 999999999999999999995 478899999999 8
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
+|+++||+|.+ ++.++||++.+++++.++++++++.|+.+||+|||++|||+
T Consensus 124 rivv~lD~r~g----------------------------~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl 175 (241)
T COG0106 124 RIVVALDARDG----------------------------KVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTL 175 (241)
T ss_pred cEEEEEEccCC----------------------------ccccccccccccCCHHHHHHHHHhcCCCeEEEEeccccccc
Confidence 99999999985 46799999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc-CchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT-NASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~-G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
+|+|+++++++++.+++|||+||||+|.+|++.+.+ . |+.|+++|+|+|.+.+++.++.++...
T Consensus 176 ~G~n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~-~~G~~GvIvG~ALy~g~~~l~ea~~~~~~ 240 (241)
T COG0106 176 SGPNVDLVKELAEAVDIPVIASGGVSSLDDIKALKE-LSGVEGVIVGRALYEGKFTLEEALACVRN 240 (241)
T ss_pred CCCCHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHh-cCCCcEEEEehHHhcCCCCHHHHHHHHhc
Confidence 999999999999999999999999999999999985 7 899999999999999999998887654
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=400.01 Aligned_cols=234 Identities=21% Similarity=0.300 Sum_probs=214.8
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
|+|||||||+ +|+|| +++|+++. ..++.+||+++|+.|+++|++++||+|||++.. ++..|.++|
T Consensus 1 M~IIPaIDl~---~Gk~Vrl~~G~~~~--------~~~~~~dP~~~A~~~~~~ga~~lhivDLd~a~~---g~~~n~~~i 66 (241)
T PRK14114 1 MLVVPAIDLF---RGKVARMVKGKKEN--------TIFYEKDPAELVEKLIEEGFTLIHVVDLSKAIE---NSVENLPVL 66 (241)
T ss_pred CEEEEEEEEE---CCEEEEeeccccCc--------ceEECCCHHHHHHHHHHCCCCEEEEEECCCccc---CCcchHHHH
Confidence 5899999999 99999 99999865 446678999999999999999999999998654 346789999
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
++|++.+ .|+|+||||||++| +++++++||++|+|||+++++ |++++++ ++||++
T Consensus 67 ~~i~~~~-~~v~vGGGIrs~e~-----------~~~~l~~Ga~rvvigT~a~~~------------p~~l~~~-~~~~~~ 121 (241)
T PRK14114 67 EKLSEFA-EHIQIGGGIRSLDY-----------AEKLRKLGYRRQIVSSKVLED------------PSFLKFL-KEIDVE 121 (241)
T ss_pred HHHHhhc-CcEEEecCCCCHHH-----------HHHHHHCCCCEEEECchhhCC------------HHHHHHH-HHhCCC
Confidence 9999988 79999999999977 999999999999999999995 4778999 569865
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
+++|||+|++ ++.++||.+.+++++.+++++++++|++++|+||+++|||+
T Consensus 122 -ivvslD~k~g----------------------------~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~ 172 (241)
T PRK14114 122 -PVFSLDTRGG----------------------------KVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTL 172 (241)
T ss_pred -EEEEEEccCC----------------------------EEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcC
Confidence 9999999864 57899999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc-----C-chHHhhhhhhccCCCCHHHHHHHHH
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT-----N-ASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~-----G-~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+|||+++++++++.+++||||||||++++|+.++.+ . | ++||++|+|+|+|.+++++++++++
T Consensus 173 ~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~-~~~~~~g~v~gvivg~Al~~g~i~~~e~~~~~~ 241 (241)
T PRK14114 173 QEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQR-VHRETNGLLKGVIVGRAFLEGILTVEVMKRYAR 241 (241)
T ss_pred CCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHh-cccccCCcEEEEEEehHHHCCCCCHHHHHHhhC
Confidence 999999999999999999999999999999999986 4 5 9999999999999999999998863
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=393.03 Aligned_cols=247 Identities=18% Similarity=0.301 Sum_probs=216.6
Q ss_pred eEEEeeeEeecCCCCEE-EEecceeeeee----ccccc-cEEec--CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCc
Q 045794 269 RVIACLDVRANDKGDLV-VTKGDQYDVRE----HTKEN-EVRNL--GKPVELARQYYKEGADEISFLNITGFRDFPLGDL 340 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v-~~~G~~~~~~~----~~~~~-~~~~~--~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~ 340 (578)
|+||||||+ +|+|| +++|+. + +. -.... ...+. .||+++|+.|.+.|++++|+||||+ + ..
T Consensus 2 ~~~PAIDl~---~Gk~VrL~~G~~-~-~~~~~~~~~~~~~~~y~~~~dP~~~A~~~~~~Ga~~lHvVDLdg---g---~~ 70 (262)
T PLN02446 2 RFRPCIDIH---KGKVKQIVGSTL-K-DSKDGSEDGSELVTNFESDKSAAEFAEMYKRDGLTGGHVIMLGA---D---DA 70 (262)
T ss_pred CeeeeEEee---CCEEEEeeCccc-c-ccccccccCCCceEEeCCCCCHHHHHHHHHHCCCCEEEEEECCC---C---Cc
Confidence 789999999 99999 999976 3 00 00000 22343 7999999999999999999999988 2 24
Q ss_pred hhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHH
Q 045794 341 PMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS 420 (578)
Q Consensus 341 ~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (578)
.|.++|++|++ +.+|||+|||||+ |+ +++||++||+||+|||.+++++ ..||+++++++
T Consensus 71 ~n~~~i~~i~~-~~~~vqvGGGIR~-e~-----------i~~~l~~Ga~rViigT~Av~~~--------~~~p~~v~~~~ 129 (262)
T PLN02446 71 SLAAALEALRA-YPGGLQVGGGVNS-EN-----------AMSYLDAGASHVIVTSYVFRDG--------QIDLERLKDLV 129 (262)
T ss_pred ccHHHHHHHHh-CCCCEEEeCCccH-HH-----------HHHHHHcCCCEEEEchHHHhCC--------CCCHHHHHHHH
Confidence 56999999999 8899999999997 76 9999999999999999999962 23578999999
Q ss_pred HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc
Q 045794 421 RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI 500 (578)
Q Consensus 421 ~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi 500 (578)
++||+|+|++|||+|.. +| .|+|+++||++.+++++.+++.++.+.|+++|++|||
T Consensus 130 ~~~G~~~IvvsiD~k~~--------------------~g----~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI 185 (262)
T PLN02446 130 RLVGKQRLVLDLSCRKK--------------------DG----RYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGV 185 (262)
T ss_pred HHhCCCCEEEEEEEEec--------------------CC----CEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEE
Confidence 99999999999999731 12 3799999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc--CchHHhhhhhh--ccCCCCHHHHHHHHHhC
Q 045794 501 DCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT--NASAALAAGIF--HRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 501 ~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~--G~~gv~vgsa~--~~~~~~~~~~~~~l~~~ 572 (578)
++|||++|+|+++++++++.+++||||||||+|++|+.+|.+ . |+.++++|+|+ |.|.++++++.++=+++
T Consensus 186 ~rDGtl~G~d~el~~~l~~~~~ipVIASGGv~sleDi~~L~~-~g~g~~gvIvGkAl~~y~g~~~l~ea~~~~~~~ 260 (262)
T PLN02446 186 DVEGKRLGIDEELVALLGEHSPIPVTYAGGVRSLDDLERVKV-AGGGRVDVTVGSALDIFGGNLPYDDVVAWHKQQ 260 (262)
T ss_pred cCCCcccCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHH-cCCCCEEEEEEeeHHHhCCCccHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999986 5 68999999999 99999999999887654
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=393.03 Aligned_cols=228 Identities=35% Similarity=0.659 Sum_probs=205.1
Q ss_pred eEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHH
Q 045794 269 RVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLR 347 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~ 347 (578)
||||||||+ +|+|| +++|.++. ..++.+||+++|+.|+++|++++|++|||+++. ++..|.++|+
T Consensus 1 ~iiP~iDl~---~G~~Vr~~~G~~~~--------~~~~~~dP~~~a~~~~~~g~~~l~ivDLdaa~~---g~~~n~~~i~ 66 (229)
T PF00977_consen 1 RIIPAIDLK---NGRVVRLVKGDRFS--------ETVYSGDPVEVAKAFNEQGADELHIVDLDAAKE---GRGSNLELIK 66 (229)
T ss_dssp EEEEEEEEE---TTEEEEESTTCCSC--------EECECCCHHHHHHHHHHTT-SEEEEEEHHHHCC---THHHHHHHHH
T ss_pred CEEEEEEEE---CCEEEECCCeecce--------eeEECcCHHHHHHHHHHcCCCEEEEEEccCccc---CchhHHHHHH
Confidence 799999999 99999 88998854 666789999999999999999999999999853 3478999999
Q ss_pred HHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCe
Q 045794 348 LTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQA 427 (578)
Q Consensus 348 ~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 427 (578)
++++++++|+|+|||||+.+| +++|++.||++|++||+++++ |+++++++++||+|+
T Consensus 67 ~i~~~~~~~i~vgGGIrs~ed-----------~~~ll~~Ga~~Vvigt~~~~~------------~~~l~~~~~~~g~~~ 123 (229)
T PF00977_consen 67 EIAKETGIPIQVGGGIRSIED-----------AERLLDAGADRVVIGTEALED------------PELLEELAERYGSQR 123 (229)
T ss_dssp HHHHHSSSEEEEESSE-SHHH-----------HHHHHHTT-SEEEESHHHHHC------------CHHHHHHHHHHGGGG
T ss_pred HHHhcCCccEEEeCccCcHHH-----------HHHHHHhCCCEEEeChHHhhc------------hhHHHHHHHHcCccc
Confidence 999999999999999999977 999999999999999999985 588899999999999
Q ss_pred EEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCC
Q 045794 428 VVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK 507 (578)
Q Consensus 428 iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~ 507 (578)
|++|||++++ |++.++||.+.+++++.++++++.++|++++|+||+++||+++
T Consensus 124 ivvslD~~~g---------------------------~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~ 176 (229)
T PF00977_consen 124 IVVSLDARDG---------------------------YKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQ 176 (229)
T ss_dssp EEEEEEEEET---------------------------EEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS
T ss_pred EEEEEEeeec---------------------------eEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcC
Confidence 9999999874 5799999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCC
Q 045794 508 GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 508 G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~ 561 (578)
|+|+++++++++.+++|+|++|||++.+|+.++.+ .|++||++|+|||.|.++
T Consensus 177 G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~-~G~~gvivg~al~~g~it 229 (229)
T PF00977_consen 177 GPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKK-AGIDGVIVGSALHEGKIT 229 (229)
T ss_dssp S--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHH-TTECEEEESHHHHTTSS-
T ss_pred CCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHH-CCCcEEEEehHhhCCccC
Confidence 99999999999988999999999999999999984 999999999999999864
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-47 Score=375.30 Aligned_cols=224 Identities=21% Similarity=0.284 Sum_probs=201.5
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
||||||||++ +|+|| +++|++. +... .+||+++|+.|+++|++++|++|||+++ ++..|.++|
T Consensus 2 m~iIP~iDl~---~G~~Vr~~~G~~~--------~~~~-~~dP~~~a~~~~~~ga~~lhivDLd~a~----~~~~n~~~i 65 (232)
T PRK13586 2 SKIIPSIDIS---LGKAVKRIRGVKG--------TGLI-LGNPIEIASKLYNEGYTRIHVVDLDAAE----GVGNNEMYI 65 (232)
T ss_pred cEEEEEEEEE---CCEEEEeeecCCC--------CceE-cCCHHHHHHHHHHCCCCEEEEEECCCcC----CCcchHHHH
Confidence 5899999999 99988 8888762 1333 4799999999999999999999999985 246788999
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
+++++++..|+|+||||||.+| +++|++.||++|++||.++++ |+++++++++||+|
T Consensus 66 ~~i~~~~~~~v~vGGGIrs~e~-----------~~~~l~~Ga~kvvigt~a~~~------------p~~~~~~~~~~g~~ 122 (232)
T PRK13586 66 KEISKIGFDWIQVGGGIRDIEK-----------AKRLLSLDVNALVFSTIVFTN------------FNLFHDIVREIGSN 122 (232)
T ss_pred HHHHhhCCCCEEEeCCcCCHHH-----------HHHHHHCCCCEEEECchhhCC------------HHHHHHHHHHhCCC
Confidence 9999966679999999999976 999999999999999999995 47889999999999
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
+|++|||++.+ +++.++||.+ +..++.+++++++++|++++|+||+++|||+
T Consensus 123 ~ivvslD~~~~---------------------------~~v~~~gw~~-~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~ 174 (232)
T PRK13586 123 RVLVSIDYDNT---------------------------KRVLIRGWKE-KSMEVIDGIKKVNELELLGIIFTYISNEGTT 174 (232)
T ss_pred CEEEEEEcCCC---------------------------CEEEccCCee-CCCCHHHHHHHHHhcCCCEEEEecccccccC
Confidence 99999999532 1788999977 7889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCC
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~ 560 (578)
+|+|+++++.+++. ..|+|++|||++.+|++++.+ .|++||++|+|+|.+.+
T Consensus 175 ~G~d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~~-~G~~gvivg~Aly~g~~ 226 (232)
T PRK13586 175 KGIDYNVKDYARLI-RGLKEYAGGVSSDADLEYLKN-VGFDYIIVGMAFYLGKL 226 (232)
T ss_pred cCcCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHH-CCCCEEEEehhhhcCcc
Confidence 99999999999876 567999999999999999985 89999999999998875
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=376.25 Aligned_cols=236 Identities=17% Similarity=0.203 Sum_probs=211.3
Q ss_pred ceeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHH
Q 045794 267 AKRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQV 345 (578)
Q Consensus 267 ~~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~ 345 (578)
.|+||||||++ +|+|| +++|+. + ..+.++||+++|+.|.+.|++++|++|||++++ ++.|.++
T Consensus 2 ~m~iiPaIDl~---~G~vVrl~~G~~-~--------~~~~y~~p~~~a~~~~~~g~~~lhivDLd~a~g----~~~n~~~ 65 (243)
T TIGR01919 2 TLILLPAVDVN---GGAAVRLQQGAG-G--------SKTYYGSLESAAKWWEQGGAEWIHLVDLDAAFG----GGNNEMM 65 (243)
T ss_pred ceEEEEEEEEE---CCEEEEeecCCC-C--------CceecCCHHHHHHHHHhCCCeEEEEEECCCCCC----CcchHHH
Confidence 46999999999 99999 888875 2 333346999999999999999999999999852 4678999
Q ss_pred HHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 346 LRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 346 i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
|+++++.+++|+|+||||||.+| ++++++.||++|++||+++++ |+++++++++||+
T Consensus 66 i~~i~~~~~~~v~vgGGIrs~e~-----------~~~~l~~Ga~~vvigT~a~~~------------p~~~~~~~~~~g~ 122 (243)
T TIGR01919 66 LEEVVKLLVVVEELSGGRRDDSS-----------LRAALTGGRARVNGGTAALEN------------PWWAAAVIRYGGD 122 (243)
T ss_pred HHHHHHHCCCCEEEcCCCCCHHH-----------HHHHHHcCCCEEEECchhhCC------------HHHHHHHHHHccc
Confidence 99999999999999999999977 999999999999999999985 4788999999986
Q ss_pred CeEEEEEecc-ccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 426 QAVVVSIDPR-RVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 426 ~~iv~slD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
+ |++|||+| ++ + +..+.++||.+ +++++.+++++++++|++++|+||+++||
T Consensus 123 ~-ivvslD~k~~g----------------------~---~~~v~~~Gw~~-~~~~~~~~~~~~~~~g~~~ii~tdI~~dG 175 (243)
T TIGR01919 123 I-VAVGLDVLEDG----------------------E---WHTLGNRGWSD-GGGDLEVLERLLDSGGCSRVVVTDSKKDG 175 (243)
T ss_pred c-EEEEEEEecCC----------------------c---eEEEECCCeec-CCCcHHHHHHHHHhCCCCEEEEEecCCcc
Confidence 5 99999997 32 1 34788999987 78999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH--hcCchHHhhhhhhccCCCCHHHHHHH
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFR--KTNASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~--~~G~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
|++|||+++++++++.+++|||||||+++.+|+.++.+ +.|++||++|+|+|.|.++++++++.
T Consensus 176 t~~G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~i~~~~~~~~ 241 (243)
T TIGR01919 176 LSGGPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARFFTLEAALAV 241 (243)
T ss_pred cCCCcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCCCCHHHHHhh
Confidence 99999999999999999999999999999999999853 35999999999999999999987643
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=373.66 Aligned_cols=224 Identities=21% Similarity=0.337 Sum_probs=206.0
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHH-cCCCeEEEEecccCCCCCCCCchhHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYK-EGADEISFLNITGFRDFPLGDLPMLQV 345 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~-~g~~~i~~~Dl~~~~~~~~~~~~~~~~ 345 (578)
++|||+|||+ +|+|| +++|++.. ...+.+||+++|+.|++ .||++|||+|||+++.+ +..|+++
T Consensus 2 ~~iiPaIDl~---~G~~Vr~~~G~~~~--------~~~~~~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~---~~~n~~~ 67 (234)
T PRK13587 2 IELWPAIDLI---GSTSVRLTEGKYDS--------EEKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQ---HAREFDY 67 (234)
T ss_pred CEEEEEEEcc---CCEEEEcCcccCCC--------ceEeCCCHHHHHHHHHhccCCCEEEEEECcccccC---CcchHHH
Confidence 5799999999 99999 99998833 33345799999999999 69999999999998643 3678999
Q ss_pred HHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 346 LRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 346 i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
|++|++.+++|||+||||||+|| +++++++||++|++||+++++ |+++++++++||
T Consensus 68 I~~i~~~~~~pi~vGGGIrs~e~-----------v~~~l~~Ga~kvvigt~a~~~------------~~~l~~~~~~fg- 123 (234)
T PRK13587 68 IKSLRRLTTKDIEVGGGIRTKSQ-----------IMDYFAAGINYCIVGTKGIQD------------TDWLKEMAHTFP- 123 (234)
T ss_pred HHHHHhhcCCeEEEcCCcCCHHH-----------HHHHHHCCCCEEEECchHhcC------------HHHHHHHHHHcC-
Confidence 99999999999999999999977 999999999999999999995 578899999998
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
++|++|||++++ ++.++||.+.+++++.+++++++++|++++|+|++++|||
T Consensus 124 ~~ivvslD~~~g----------------------------~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt 175 (234)
T PRK13587 124 GRIYLSVDAYGE----------------------------DIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGK 175 (234)
T ss_pred CCEEEEEEeeCC----------------------------EEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCC
Confidence 569999999864 6789999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
++|+|+++++++.+.+++|||++||+++++|+.++++ .|+++|++|+++|.+
T Consensus 176 ~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~-~G~~~vivG~a~~~~ 227 (234)
T PRK13587 176 MSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLAS-LNVHAAIIGKAAHQA 227 (234)
T ss_pred CCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCCEEEEhHHHHhC
Confidence 9999999999999989999999999999999999995 999999999999984
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=372.06 Aligned_cols=234 Identities=18% Similarity=0.317 Sum_probs=211.9
Q ss_pred ceeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHH
Q 045794 267 AKRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQV 345 (578)
Q Consensus 267 ~~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~ 345 (578)
.|||||+||++ +|+|| +++|++ + ..+.++||+++|+.|+++|+++||++|||++. +++.|.++
T Consensus 3 ~m~iIP~idl~---~G~~V~~~~g~~-~--------~~~~~~dp~~~a~~~~~~g~~~l~ivDLd~~~----g~~~n~~~ 66 (241)
T PRK14024 3 SLTLLPAVDVV---DGQAVRLVQGEA-G--------SETSYGSPLDAALAWQRDGAEWIHLVDLDAAF----GRGSNREL 66 (241)
T ss_pred ceEEEEEEEeE---CCEEEEeecccc-c--------CceECCCHHHHHHHHHHCCCCEEEEEeccccC----CCCccHHH
Confidence 47999999999 99999 889986 2 34446799999999999999999999999874 34678999
Q ss_pred HHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 346 LRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 346 i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
|++|++.+++|+|+||||||+|| +++++++||+++++||+++++ |+++++++++|++
T Consensus 67 i~~i~~~~~~pv~vgGGirs~ed-----------v~~~l~~Ga~kvviGs~~l~~------------p~l~~~i~~~~~~ 123 (241)
T PRK14024 67 LAEVVGKLDVKVELSGGIRDDES-----------LEAALATGCARVNIGTAALEN------------PEWCARVIAEHGD 123 (241)
T ss_pred HHHHHHHcCCCEEEcCCCCCHHH-----------HHHHHHCCCCEEEECchHhCC------------HHHHHHHHHHhhh
Confidence 99999999999999999999977 999999999999999999995 4788999999985
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
++++|+|++.+ .+.++||.+ +..+++++++++++.|++++++|+++++|+
T Consensus 124 -~i~vsld~~~~----------------------------~v~~~Gw~~-~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~ 173 (241)
T PRK14024 124 -RVAVGLDVRGH----------------------------TLAARGWTR-DGGDLWEVLERLDSAGCSRYVVTDVTKDGT 173 (241)
T ss_pred -hEEEEEEEecc----------------------------EeccCCeee-cCccHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence 59999998753 456789987 567999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH--hcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFR--KTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~--~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
++|+|+++++++++.+++|||++|||++.+|+.++.+ +.||+||++|+++|.+.+++++++++.
T Consensus 174 ~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~~~~ 239 (241)
T PRK14024 174 LTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEALAVV 239 (241)
T ss_pred ccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHHHHh
Confidence 9999999999999999999999999999999999863 369999999999999999999988764
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=369.73 Aligned_cols=250 Identities=35% Similarity=0.574 Sum_probs=227.9
Q ss_pred ccceeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHH
Q 045794 265 KLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQ 344 (578)
Q Consensus 265 ~~~~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~ 344 (578)
|+++||||+||++ +|++|..+|+. ..++.+||+++|+.|++.|+++||++||+++.. .+++|++
T Consensus 1 m~~~~iipaiD~~---~G~~V~~~~~~----------~~~~~~dp~~~a~~~~~~g~~~l~i~Dl~~~~~---~~~~n~~ 64 (258)
T PRK01033 1 MLRPRIIPCLLLK---DGGLVKTVKFK----------DPRYIGDPINAVRIFNEKEVDELIVLDIDASKR---GSEPNYE 64 (258)
T ss_pred CCCcEEEEEEEEE---CCcEEEeeccc----------CceeCCCHHHHHHHHHHcCCCEEEEEECCCCcC---CCcccHH
Confidence 6789999999999 89988666654 223568999999999999999999999999742 3478999
Q ss_pred HHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCC
Q 045794 345 VLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG 424 (578)
Q Consensus 345 ~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (578)
+|+++++.+++||++||||++++| +++++++|+++|++||+++++ |+++++++++||
T Consensus 65 ~i~~i~~~~~~pv~~gGGi~s~~d-----------~~~l~~~G~~~vvigs~~~~~------------~~~~~~~~~~~~ 121 (258)
T PRK01033 65 LIENLASECFMPLCYGGGIKTLEQ-----------AKKIFSLGVEKVSINTAALED------------PDLITEAAERFG 121 (258)
T ss_pred HHHHHHHhCCCCEEECCCCCCHHH-----------HHHHHHCCCCEEEEChHHhcC------------HHHHHHHHHHhC
Confidence 999999999999999999999977 999999999999999999985 478899999999
Q ss_pred CCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 425 NQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 425 ~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
+++|++|||+|.+.. | .|++.++||++.++.++.+++++++++|++++++|+++++|
T Consensus 122 ~~~i~vsiD~k~g~~-------------------~----~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G 178 (258)
T PRK01033 122 SQSVVVSIDVKKNLG-------------------G----KFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDG 178 (258)
T ss_pred CCcEEEEEEEecCCC-------------------C----cEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCC
Confidence 999999999987511 1 37899999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC--------CCCHHHHHHHHHhCCCee
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK--------EVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~--------~~~~~~~~~~l~~~~i~v 576 (578)
+++|+|+++++++++.+++|||++|||++.+|+.+++++.||+||++|+|||+. ..++..+|.+|++++|++
T Consensus 179 ~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (258)
T PRK01033 179 TMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFKGVYKAVLINYPNGDEKEELLKAGIPV 258 (258)
T ss_pred CcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeCcccccccccccHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999866999999999999999 999999999999999975
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=363.85 Aligned_cols=233 Identities=20% Similarity=0.314 Sum_probs=201.2
Q ss_pred eEEEeeeEeecCCCCEE-EEecceeeeeecccccc------E-EecCCH-HHHHHHHHHcCCCeEEEEecccCCCCCCCC
Q 045794 269 RVIACLDVRANDKGDLV-VTKGDQYDVREHTKENE------V-RNLGKP-VELARQYYKEGADEISFLNITGFRDFPLGD 339 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~------~-~~~~~p-~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~ 339 (578)
++||+|||+ +|+|| +++|+. + +. . .+..|| +++|+.|.++||++||+||| + .
T Consensus 2 ~~iPAIDl~---~Gk~VrL~qG~~-~-------~~~~~~~~~~~y~~~pp~~~A~~~~~~Ga~~lHvVDL-g-------~ 62 (253)
T TIGR02129 2 KFRPCIDIH---NGKVKQIVGGTL-T-------SKKGSVLKTNFVSDKPSSYYAKLYKDDGVKGCHVIML-G-------P 62 (253)
T ss_pred ceEeEEEee---CCEEEEeeCcCc-c-------ccccCCcceEEecCCCHHHHHHHHHHcCCCEEEEEEC-C-------C
Confidence 689999999 99999 999986 3 23 3 455667 99999999999999999999 2 1
Q ss_pred chhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHH
Q 045794 340 LPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQI 419 (578)
Q Consensus 340 ~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~ 419 (578)
. |.++|++|++++++||++|||||+ |+ ++++|++||++|+|||.+++++ .++|++++++
T Consensus 63 ~-n~~~i~~i~~~~~~~v~vGGGIr~-e~-----------v~~~l~aGa~rVvIGS~av~~~--------~i~~~~~~~i 121 (253)
T TIGR02129 63 N-NDDAAKEALHAYPGGLQVGGGIND-TN-----------AQEWLDEGASHVIVTSWLFTKG--------KFDLKRLKEI 121 (253)
T ss_pred C-cHHHHHHHHHhCCCCEEEeCCcCH-HH-----------HHHHHHcCCCEEEECcHHHhCC--------CCCHHHHHHH
Confidence 3 789999999999999999999998 76 9999999999999999999853 2357899999
Q ss_pred HHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHH-HHHHHHHHcCCcEEEEe
Q 045794 420 SRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAY-ELAKAVEDLGAGEILLN 498 (578)
Q Consensus 420 ~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-e~~~~~~~~G~~~ii~t 498 (578)
+++||+|+|++|||+|.. .+| .|+|+++||.+.+++++. ++++++++. +++|++|
T Consensus 122 ~~~fG~~~IvvsiD~k~~-------------------~~g----~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~T 177 (253)
T TIGR02129 122 VSLVGKDRLIVDLSCRKT-------------------QDG----RWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIH 177 (253)
T ss_pred HHHhCCCCEEEEEEEEEc-------------------CCC----cEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEe
Confidence 999999999999999721 012 379999999999999999 999999999 9999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh-cCchHHhhhhhhc-c--CCCCHHHH
Q 045794 499 CIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRK-TNASAALAAGIFH-R--KEVPIQSV 565 (578)
Q Consensus 499 di~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~-~G~~gv~vgsa~~-~--~~~~~~~~ 565 (578)
|+++|||++|+|+++++++++.+++|||||||+++++|++++.+. .|..++++|+|++ + +.+.+.++
T Consensus 178 dI~rDGtl~G~dlel~~~l~~~~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~f~~~~~~~~~~ 248 (253)
T TIGR02129 178 AADVEGLCKGIDEELVSKLGEWSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDIFGGNLVKFTDC 248 (253)
T ss_pred eecccCccccCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHHhCCCCccHHHH
Confidence 999999999999999999999999999999999999999999542 2677788888764 2 33444443
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-45 Score=366.70 Aligned_cols=254 Identities=50% Similarity=0.847 Sum_probs=230.4
Q ss_pred ccceeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHH
Q 045794 265 KLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQ 344 (578)
Q Consensus 265 ~~~~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~ 344 (578)
|++++|||+||++ +|+| |+|++++ ...+..||+++|+.|.+.|++++|++||+++.. ..+.|++
T Consensus 1 ~~~~~iip~iD~~---~G~~--V~~~~~~--------~~~~~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~---~~~~n~~ 64 (254)
T TIGR00735 1 MLAKRIIPCLDVR---DGRV--VKGVQFL--------NLRDAGDPVELAQRYDEEGADELVFLDITASSE---GRTTMID 64 (254)
T ss_pred CCCCeEEEEEEeE---CCEE--EEeEeec--------CceECCCHHHHHHHHHHcCCCEEEEEcCCcccc---cChhhHH
Confidence 7789999999999 8985 6777643 345567999999999999999999999998632 3478999
Q ss_pred HHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCC
Q 045794 345 VLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG 424 (578)
Q Consensus 345 ~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (578)
+|+++++.+++||++||||||.+| +++++++||++|++||+++++ |++++++.++||
T Consensus 65 ~i~~i~~~~~~pv~~~GGi~s~~d-----------~~~~~~~Ga~~vivgt~~~~~------------p~~~~~~~~~~~ 121 (254)
T TIGR00735 65 VVERTAETVFIPLTVGGGIKSIED-----------VDKLLRAGADKVSINTAAVKN------------PELIYELADRFG 121 (254)
T ss_pred HHHHHHHhcCCCEEEECCCCCHHH-----------HHHHHHcCCCEEEEChhHhhC------------hHHHHHHHHHcC
Confidence 999999999999999999999977 999999999999999999985 478899999999
Q ss_pred CCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 425 NQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 425 ~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
+++|++|||++++.+. + +.||+|+++||.+.++.++.++++.+++.|+++|++|+++++|
T Consensus 122 ~~~iv~slD~~~g~~~------------------~--~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g 181 (254)
T TIGR00735 122 SQCIVVAIDAKRVYVN------------------S--YCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDG 181 (254)
T ss_pred CCCEEEEEEeccCCCC------------------C--CccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCccc
Confidence 9999999999875321 0 1368999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeec
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 577 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~ 577 (578)
++.|+|+++++++++.+++|||++|||++++|+.++++..||+||++|+++|++.+++++++++|++.||+||
T Consensus 182 ~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~~ 254 (254)
T TIGR00735 182 TKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIPVR 254 (254)
T ss_pred CCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCccC
Confidence 9999999999999999999999999999999999999744599999999999999999999999999999986
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=363.72 Aligned_cols=253 Identities=48% Similarity=0.788 Sum_probs=229.0
Q ss_pred ccceeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHH
Q 045794 265 KLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQ 344 (578)
Q Consensus 265 ~~~~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~ 344 (578)
|++++|||+||++ +|+|| +++++. ...+.+||+++|+.|.+.|++++|++|+++... .++.|++
T Consensus 1 ~~~~~iip~idl~---~g~~V--~~~~~~--------~~~~~~d~~~~a~~~~~~G~~~i~i~dl~~~~~---~~~~~~~ 64 (253)
T PRK02083 1 MLAKRIIPCLDVK---DGRVV--KGVNFV--------NLRDAGDPVELAKRYNEEGADELVFLDITASSE---GRDTMLD 64 (253)
T ss_pred CCCCeEEEEEEEE---CCEEE--EeEEec--------ceeecCCHHHHHHHHHHcCCCEEEEEeCCcccc---cCcchHH
Confidence 7789999999999 89965 444433 346678999999999999999999999998532 2378999
Q ss_pred HHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCC
Q 045794 345 VLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG 424 (578)
Q Consensus 345 ~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (578)
+|+++++++++||++||||++.+| ++++++.||++|++||.++.+ |++++++++.||
T Consensus 65 ~i~~i~~~~~ipv~~~GGi~s~~~-----------~~~~l~~Ga~~Viigt~~l~~------------p~~~~ei~~~~g 121 (253)
T PRK02083 65 VVERVAEQVFIPLTVGGGIRSVED-----------ARRLLRAGADKVSINSAAVAN------------PELISEAADRFG 121 (253)
T ss_pred HHHHHHHhCCCCEEeeCCCCCHHH-----------HHHHHHcCCCEEEEChhHhhC------------cHHHHHHHHHcC
Confidence 999999999999999999999977 999999999999999999985 478899999999
Q ss_pred CCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 425 NQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 425 ~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
+++|++|+|++++.. .| .|+|+++||.+.++.++.++++++++.|++++++|+++++|
T Consensus 122 ~~~iv~slD~~~~~~------------------~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g 179 (253)
T PRK02083 122 SQCIVVAIDAKRDPE------------------PG----RWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDG 179 (253)
T ss_pred CCCEEEEEEeccCCC------------------CC----CEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCC
Confidence 999999999986421 01 26899999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeecC
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~~ 578 (578)
+++|+|+++++++++.+++|||++||+++.+|+.++++..||+||++|+++|++.+++++++++|+++||+||+
T Consensus 180 ~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~~~~~~~~ 253 (253)
T PRK02083 180 TKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAEQGIPVRL 253 (253)
T ss_pred CCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHHCCCcccC
Confidence 99999999999999999999999999999999999987579999999999999999999999999999999985
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=353.47 Aligned_cols=230 Identities=26% Similarity=0.400 Sum_probs=206.1
Q ss_pred eEEEeeeEeecCCCCEE-EEecceeeeeeccc-cccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 269 RVIACLDVRANDKGDLV-VTKGDQYDVREHTK-ENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~-~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
|||||||++ +|+|| +++|++. .|+| ++...+.+||+++|+.|++.|++++|++|||++. +...|+++|
T Consensus 1 riiP~iDl~---~G~~V~~~~G~~~---~~~p~~~~~~~~~dp~~~a~~~~~~g~~~l~i~DLd~~~----~~~~n~~~i 70 (233)
T cd04723 1 RIIPVIDLK---DGVVVHGVGGDRD---NYRPITSNLCSTSDPLDVARAYKELGFRGLYIADLDAIM----GRGDNDEAI 70 (233)
T ss_pred CeEEEEECc---CCEEEEeeccChh---hccccccCcccCCCHHHHHHHHHHCCCCEEEEEeCcccc----CCCccHHHH
Confidence 699999999 99988 7788763 3444 3455667899999999999999999999999974 246789999
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
+++++.+++|+|+|||||++|| +++++++||++|++||.++++ +++++++++||+|
T Consensus 71 ~~i~~~~~~~v~vgGGir~~ed-----------v~~~l~~Ga~~viigt~~~~~-------------~~~~~~~~~~~~~ 126 (233)
T cd04723 71 RELAAAWPLGLWVDGGIRSLEN-----------AQEWLKRGASRVIVGTETLPS-------------DDDEDRLAALGEQ 126 (233)
T ss_pred HHHHHhCCCCEEEecCcCCHHH-----------HHHHHHcCCCeEEEcceeccc-------------hHHHHHHHhcCCC
Confidence 9999999999999999999977 999999999999999999983 5679999999988
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
++++|||++++. +. | +.+..++.++++++++. +++++++|++++|++
T Consensus 127 ~iivslD~~~~~----------------------------~~---~-~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~ 173 (233)
T cd04723 127 RLVLSLDFRGGQ----------------------------LL---K-PTDFIGPEELLRRLAKW-PEELIVLDIDRVGSG 173 (233)
T ss_pred CeEEEEeccCCe----------------------------ec---c-ccCcCCHHHHHHHHHHh-CCeEEEEEcCccccC
Confidence 999999998752 22 2 44578999999999999 999999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
+|+|+++++++.+.+++||+++|||++++|++++++ .|+++|++||++|.+.+++++++
T Consensus 174 ~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~-~G~~~vivGsal~~g~~~~~~~~ 232 (233)
T cd04723 174 QGPDLELLERLAARADIPVIAAGGVRSVEDLELLKK-LGASGALVASALHDGGLTLEDVV 232 (233)
T ss_pred CCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH-cCCCEEEEehHHHcCCCCHHHHh
Confidence 999999999999999999999999999999999996 89999999999999999998876
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=346.92 Aligned_cols=224 Identities=20% Similarity=0.365 Sum_probs=200.7
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
|||||+||++ +|+|| +++||+. ....++||+++|+.|.+. ++++|++|||++..+ ...|+++|
T Consensus 2 mrIip~iD~~---~G~vVr~~~G~~~---------~~~~~~dp~~~a~~~~~~-~~~l~ivDldga~~g---~~~n~~~i 65 (228)
T PRK04128 2 MRIYPAIDLM---NGKAVRLYKGRKE---------EVKVYGDPVEIALRFSEY-VDKIHVVDLDGAFEG---KPKNLDVV 65 (228)
T ss_pred cEEEEEEEeE---CCEEEEEEecccc---------CceECCCHHHHHHHHHHh-CCEEEEEECcchhcC---CcchHHHH
Confidence 5999999999 99998 9999983 233346999999999998 999999999987543 35789999
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
+++++.+++||++|||||+.+| +++++++|+++|++||+++ + |+++++++++||+
T Consensus 66 ~~i~~~~~~pv~~gGGIrs~ed-----------v~~l~~~G~~~vivGtaa~-~------------~~~l~~~~~~~g~- 120 (228)
T PRK04128 66 KNIIRETGLKVQVGGGLRTYES-----------IKDAYEIGVENVIIGTKAF-D------------LEFLEKVTSEFEG- 120 (228)
T ss_pred HHHHhhCCCCEEEcCCCCCHHH-----------HHHHHHCCCCEEEECchhc-C------------HHHHHHHHHHcCC-
Confidence 9999999999999999999977 9999999999999999999 5 3778999999973
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
|++|||+|++ ++.++||.+.++.+++++++++++. ++++|+|++++|||+
T Consensus 121 -ivvslD~~~g----------------------------~v~~~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~ 170 (228)
T PRK04128 121 -ITVSLDVKGG----------------------------RIAVKGWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTL 170 (228)
T ss_pred -EEEEEEccCC----------------------------eEecCCCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcc
Confidence 9999999874 5779999999999999999999999 999999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHH
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKE 567 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~ 567 (578)
+|+| ++.+.+ .++||||+|||++++|+.++.+ .|++||++|+|||++.++++++++
T Consensus 171 ~G~d-~l~~~~---~~~pviasGGv~~~~Dl~~l~~-~g~~gvivg~al~~g~~~~~~~~~ 226 (228)
T PRK04128 171 TGIE-EIERFW---GDEEFIYAGGVSSAEDVKKLAE-IGFSGVIIGKALYEGRISLEELLE 226 (228)
T ss_pred cCHH-HHHHhc---CCCCEEEECCCCCHHHHHHHHH-CCCCEEEEEhhhhcCCcCHHHHHh
Confidence 9999 444432 4799999999999999999986 899999999999999999998764
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=332.66 Aligned_cols=217 Identities=20% Similarity=0.236 Sum_probs=187.7
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccc-cccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTK-ENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQV 345 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~-~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~ 345 (578)
|||||+||++ +|+|| +++|++. .|+| ++...+.+||+++|+.|+++|++++|++|||++. ++..|+++
T Consensus 1 m~iIP~iDl~---~g~~Vr~~~G~~~---~~~~~~~~~~~~~dP~~~a~~~~~~g~~~l~ivDLd~~~----~~~~n~~~ 70 (221)
T TIGR00734 1 MKIIPVIDLK---DGIAVAGKSGERE---SYPPLESVSRLSSSPDDAAKVIEEIGARFIYIADLDRIV----GLGDNFSL 70 (221)
T ss_pred CEEEEEEEee---CCEEEEccccCcc---cccccccceecCCCHHHHHHHHHHcCCCEEEEEEccccc----CCcchHHH
Confidence 5999999999 99998 8888763 3444 2345667999999999999999999999999974 34678999
Q ss_pred HHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH--cCcceeecchhhhccchhhhhccccCCchHHHHHHHhC
Q 045794 346 LRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR--SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY 423 (578)
Q Consensus 346 i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~--~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (578)
|++|+++ +|+|+|||||+.|| +++++. .||+||++||.++++ |++++++.
T Consensus 71 i~~i~~~--~~v~vgGGirs~e~-----------~~~~~~~l~~a~rvvigT~a~~~------------p~~l~~~~--- 122 (221)
T TIGR00734 71 LSKLSKR--VELIADCGVRSPED-----------LETLPFTLEFASRVVVATETLDI------------TELLRECY--- 122 (221)
T ss_pred HHHHHhh--CcEEEcCccCCHHH-----------HHHHHhhhccceEEeecChhhCC------------HHHHHHhh---
Confidence 9999987 49999999999977 888865 269999999999995 36667764
Q ss_pred CCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC
Q 045794 424 GNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD 503 (578)
Q Consensus 424 g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d 503 (578)
+++|||++++ ++.++||.+ ++.++.+.+.++|+ ++++||+++|
T Consensus 123 ----~vvslD~~~g----------------------------~v~~~g~~~----~~~~~~~~~~~~g~-~ii~tdI~~d 165 (221)
T TIGR00734 123 ----TVVSLDFKEK----------------------------FLDASGLFE----SLEEVRDFLNSFDY-GLIVLDIHSV 165 (221)
T ss_pred ----hEEEEEeECC----------------------------ccccccccc----cHHHHHHHHHhcCC-EEEEEECCcc
Confidence 6999999864 244578875 57888999999998 8999999999
Q ss_pred CCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCC
Q 045794 504 GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 504 G~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~ 560 (578)
||++|+|+++++++++.+++|||++|||++++|++++++ .|++||++|+|+|+|.+
T Consensus 166 Gt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~-~Ga~~vivgsal~~g~i 221 (221)
T TIGR00734 166 GTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKE-MGVSAVLVATAVHKGKI 221 (221)
T ss_pred ccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHH-CCCCEEEEhHHhhCCCC
Confidence 999999999999999999999999999999999999885 89999999999999864
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=332.70 Aligned_cols=238 Identities=27% Similarity=0.492 Sum_probs=216.9
Q ss_pred ceeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHH
Q 045794 267 AKRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQV 345 (578)
Q Consensus 267 ~~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~ 345 (578)
.||||||||++ +|+|| +++|.+.. ...+.+||+++|+.|.+.|++++|++|++++.. +...+.+.
T Consensus 2 ~~~iip~idl~---~g~~v~~~~g~~~~--------~~~~~~~~~e~a~~~~~~G~~~l~i~dl~~~~~---~~~~~~~~ 67 (241)
T PRK13585 2 SFEVIPAVDMK---GGKCVQLVQGEPGT--------ETVSYGDPVEVAKRWVDAGAETLHLVDLDGAFE---GERKNAEA 67 (241)
T ss_pred CeEEEEEEEeE---CCeEEEeeccccCC--------ceEECCCHHHHHHHHHHcCCCEEEEEechhhhc---CCcccHHH
Confidence 37999999999 99998 88888743 334568999999999999999999999997643 33667999
Q ss_pred HHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 346 LRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 346 i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
|+++++.+++|+++|||||+.+| ++.++++||++|++||.++++ |+++.++.+.||+
T Consensus 68 i~~i~~~~~~~l~v~GGi~~~~~-----------~~~~~~~Ga~~v~iGs~~~~~------------~~~~~~i~~~~g~ 124 (241)
T PRK13585 68 IEKIIEAVGVPVQLGGGIRSAED-----------AASLLDLGVDRVILGTAAVEN------------PEIVRELSEEFGS 124 (241)
T ss_pred HHHHHHHcCCcEEEcCCcCCHHH-----------HHHHHHcCCCEEEEChHHhhC------------hHHHHHHHHHhCC
Confidence 99999999999999999999977 999999999999999999985 4778999999999
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
++|++++|++++ ++.++||.+.++.++.++++++++.|++++++|+++++|+
T Consensus 125 ~~i~~sid~~~~----------------------------~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~ 176 (241)
T PRK13585 125 ERVMVSLDAKDG----------------------------EVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGL 176 (241)
T ss_pred CcEEEEEEeeCC----------------------------EEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 999999998864 5778999998888999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
..|+|+++++++++.+++||+++|||++++|+.++++ .||+||++|+++|.++..+++++++++
T Consensus 177 ~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~-~Ga~gv~vgsa~~~~~~~~~~~~~~~~ 240 (241)
T PRK13585 177 LEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKE-AGAAGVVVGSALYKGKFTLEEAIEAVK 240 (241)
T ss_pred cCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCCEEEEEHHHhcCCcCHHHHHHHhc
Confidence 9999999999999999999999999999999999874 999999999999999999999988875
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=333.37 Aligned_cols=231 Identities=23% Similarity=0.386 Sum_probs=208.8
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
|+|||+||++ +|+|| +++||++. ...+.+||+++|+.|++.|++++|++|||++..+ ++.|++++
T Consensus 1 m~iip~iD~~---~g~~v~~~~G~~~~--------~~~~~~~~~~~a~~~~~~g~~~i~v~dld~~~~g---~~~~~~~i 66 (233)
T PRK00748 1 MIIIPAIDLK---DGKCVRLYQGDYDQ--------ATVYSDDPVAQAKAWEDQGAKWLHLVDLDGAKAG---KPVNLELI 66 (233)
T ss_pred CeEEEEEEEE---CCeEEEcccccccc--------ceEecCCHHHHHHHHHHcCCCEEEEEeCCccccC---CcccHHHH
Confidence 4899999999 99988 79999843 4445689999999999999999999999987533 36789999
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
+++++.+++||++|||||+.+| +++++++||++|++|++++++ |+++++++++|+ +
T Consensus 67 ~~i~~~~~~pv~~~GGI~~~ed-----------~~~~~~~Ga~~vilg~~~l~~------------~~~l~ei~~~~~-~ 122 (233)
T PRK00748 67 EAIVKAVDIPVQVGGGIRSLET-----------VEALLDAGVSRVIIGTAAVKN------------PELVKEACKKFP-G 122 (233)
T ss_pred HHHHHHCCCCEEEcCCcCCHHH-----------HHHHHHcCCCEEEECchHHhC------------HHHHHHHHHHhC-C
Confidence 9999999999999999999977 999999999999999999985 467899999995 6
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
++++++|+|.+ .+.++||.+.+..++.++++++++.|++++++|+++++|++
T Consensus 123 ~i~vsid~k~~----------------------------~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~ 174 (233)
T PRK00748 123 KIVVGLDARDG----------------------------KVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTL 174 (233)
T ss_pred CceeeeeccCC----------------------------EEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCc
Confidence 79999999752 57789999888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHH
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQS 564 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~ 564 (578)
+|+|+++++++++.+++|||++|||++++|++++++..||+||++|+++|++.+++.+
T Consensus 175 ~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~~~~~~~ 232 (233)
T PRK00748 175 SGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEGKFDLAE 232 (233)
T ss_pred CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcCCcCccc
Confidence 9999999999999999999999999999999999974349999999999999988765
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=331.56 Aligned_cols=228 Identities=29% Similarity=0.481 Sum_probs=208.5
Q ss_pred EEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH
Q 045794 270 VIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL 348 (578)
Q Consensus 270 iIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~ 348 (578)
|||+||++ +|+|| +++|+++. ...+.+||+++|+.|++.|++++|++||+++..+ +..|+++|++
T Consensus 1 iip~id~~---~g~~v~~~~G~~~~--------~~~~~~dp~~~a~~~~~~g~~~l~v~dl~~~~~g---~~~~~~~i~~ 66 (230)
T TIGR00007 1 IIPAIDIK---DGKCVRLYQGDYDK--------ETVYGDDPVEAAKKWEEEGAERIHVVDLDGAKEG---GPVNLPVIKK 66 (230)
T ss_pred CEeEEEee---CCEEEEeeccccCc--------ceEecCCHHHHHHHHHHcCCCEEEEEeCCccccC---CCCcHHHHHH
Confidence 69999999 99998 89999854 3334579999999999999999999999998543 3568999999
Q ss_pred HhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeE
Q 045794 349 TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAV 428 (578)
Q Consensus 349 i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~i 428 (578)
+++.+++|+++|||||+.+| +++++++||++|++||.++++ |+.+.+++++||+++|
T Consensus 67 i~~~~~~pi~~ggGI~~~ed-----------~~~~~~~Ga~~vvlgs~~l~d------------~~~~~~~~~~~g~~~i 123 (230)
T TIGR00007 67 IVRETGVPVQVGGGIRSLED-----------VEKLLDLGVDRVIIGTAAVEN------------PDLVKELLKEYGPERI 123 (230)
T ss_pred HHHhcCCCEEEeCCcCCHHH-----------HHHHHHcCCCEEEEChHHhhC------------HHHHHHHHHHhCCCcE
Confidence 99999999999999999977 999999999999999999985 4778999999999999
Q ss_pred EEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC
Q 045794 429 VVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG 508 (578)
Q Consensus 429 v~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G 508 (578)
++|+|+|.+ ++.++||.+.+..++.++++.+++.|++++++|+++++|+..|
T Consensus 124 ~~sid~~~~----------------------------~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g 175 (230)
T TIGR00007 124 VVSLDARGG----------------------------EVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSG 175 (230)
T ss_pred EEEEEEECC----------------------------EEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCC
Confidence 999999864 5778999998888999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHH
Q 045794 509 FDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQ 563 (578)
Q Consensus 509 ~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~ 563 (578)
+|+++++++++.+++||+++|||++.+|++++++ .||+||++|+++|.+.++++
T Consensus 176 ~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~-~Gadgv~ig~a~~~~~~~~~ 229 (230)
T TIGR00007 176 PNFELTKELVKAVNVPVIASGGVSSIDDLIALKK-LGVYGVIVGKALYEGKITLE 229 (230)
T ss_pred CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-CCCCEEEEeHHHHcCCCCCC
Confidence 9999999999999999999999999999999985 99999999999999988754
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=322.28 Aligned_cols=232 Identities=25% Similarity=0.451 Sum_probs=210.7
Q ss_pred eEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHH
Q 045794 269 RVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLR 347 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~ 347 (578)
.||||||++ ||+|| .++|++.+ ..++..||+++|+.|++.|++++||+||++... +.+.|.++++
T Consensus 1 ~iip~idl~---~g~~v~~~~G~~~~--------~~~~~~dp~~~a~~~~~~g~d~l~v~dl~~~~~---~~~~~~~~i~ 66 (234)
T cd04732 1 IIIPAIDLK---DGKCVRLYQGDYDK--------KTVYSDDPVEVAKKWEEAGAKWLHVVDLDGAKG---GEPVNLELIE 66 (234)
T ss_pred CEEEEEEeE---CCEEEEeecccCCC--------CeEECCCHHHHHHHHHHcCCCEEEEECCCcccc---CCCCCHHHHH
Confidence 489999999 99998 88888733 345678999999999999999999999998643 2467899999
Q ss_pred HHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCe
Q 045794 348 LTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQA 427 (578)
Q Consensus 348 ~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 427 (578)
++++.+++|+++||||++.+| ++++++.|||+|++|+.++.+ |+++++++++||+++
T Consensus 67 ~i~~~~~~pv~~~GgI~~~e~-----------~~~~~~~Gad~vvigs~~l~d------------p~~~~~i~~~~g~~~ 123 (234)
T cd04732 67 EIVKAVGIPVQVGGGIRSLED-----------IERLLDLGVSRVIIGTAAVKN------------PELVKELLKEYGGER 123 (234)
T ss_pred HHHHhcCCCEEEeCCcCCHHH-----------HHHHHHcCCCEEEECchHHhC------------hHHHHHHHHHcCCce
Confidence 999999999999999999976 999999999999999999985 477899999999999
Q ss_pred EEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCC
Q 045794 428 VVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK 507 (578)
Q Consensus 428 iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~ 507 (578)
|++|+|++.+ ++.+++|.+.+..++.++++.+++.|++++++|+++++|+++
T Consensus 124 i~~sid~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~ 175 (234)
T cd04732 124 IVVGLDAKDG----------------------------KVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLS 175 (234)
T ss_pred EEEEEEeeCC----------------------------EEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccC
Confidence 9999998764 466788987778899999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 508 GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 508 G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
|+|+++++++++.+++||+++|||++.+|+.++++ .||+||++|+++|.+.+++.++.
T Consensus 176 g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~-~Ga~gv~vg~~~~~~~~~~~~~~ 233 (234)
T cd04732 176 GPNFELYKELAAATGIPVIASGGVSSLDDIKALKE-LGVAGVIVGKALYEGKITLEEAL 233 (234)
T ss_pred CCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHH-CCCCEEEEeHHHHcCCCCHHHHh
Confidence 99999999999999999999999999999999996 89999999999999999887653
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=315.59 Aligned_cols=243 Identities=49% Similarity=0.765 Sum_probs=217.1
Q ss_pred eeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHH
Q 045794 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLR 347 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~ 347 (578)
+||||+||++ +|+||...+++ ...+..||+++|+.|++.|+++||++|+++. + ..++.|+++++
T Consensus 1 ~~ii~~iD~~---~g~~v~~~~~~----------~~~~~~d~~~~a~~~~~~G~~~i~i~d~~~~--~-~~~~~~~~~i~ 64 (243)
T cd04731 1 KRIIPCLDVK---DGRVVKGVNFK----------NLRDAGDPVELAKRYNEQGADELVFLDITAS--S-EGRETMLDVVE 64 (243)
T ss_pred CeEEEEEEEE---CCeEEEeEccc----------cceeCCCHHHHHHHHHHCCCCEEEEEcCCcc--c-ccCcccHHHHH
Confidence 5899999999 99987444433 3345679999999999999999999999974 2 23477999999
Q ss_pred HHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCe
Q 045794 348 LTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQA 427 (578)
Q Consensus 348 ~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 427 (578)
++++++++||+++|||++.+| ++++++.|++.|++|+.++.+ |+++.++.++|++++
T Consensus 65 ~i~~~~~~pv~~~GGI~s~~d-----------~~~~l~~G~~~v~ig~~~~~~------------p~~~~~i~~~~~~~~ 121 (243)
T cd04731 65 RVAEEVFIPLTVGGGIRSLED-----------ARRLLRAGADKVSINSAAVEN------------PELIREIAKRFGSQC 121 (243)
T ss_pred HHHHhCCCCEEEeCCCCCHHH-----------HHHHHHcCCceEEECchhhhC------------hHHHHHHHHHcCCCC
Confidence 999999999999999999977 999999999999999999985 477899999999899
Q ss_pred EEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCC
Q 045794 428 VVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK 507 (578)
Q Consensus 428 iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~ 507 (578)
++++||++.+.. . .+++.++||.+.+..+..++++.+++.|+++|++|+++++|+++
T Consensus 122 i~~~ld~k~~~~-------------------~----~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~ 178 (243)
T cd04731 122 VVVSIDAKRRGD-------------------G----GYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKK 178 (243)
T ss_pred EEEEEEeeecCC-------------------C----ceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCC
Confidence 999999986421 0 14899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 508 GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 508 G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
|+|+++++++++.+++|||++|||++++|+.++++..||++|++|+++|++.+.+++++++|++.
T Consensus 179 g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~~~~~~~~~ 243 (243)
T cd04731 179 GYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAELKEYLAER 243 (243)
T ss_pred CCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHHHHHHHhhC
Confidence 99999999999999999999999999999999997569999999999999999999999999763
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=297.08 Aligned_cols=201 Identities=48% Similarity=0.873 Sum_probs=183.7
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
++|+|+||++||+.++.++|++.|+++.+.+.++++..+|+||+||=|.+...+..+++.++.+.|+++++.++|+||||
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~~AD~liLPGVGaf~~am~~L~~~gl~~~i~~~~~~~kP~LGIC 81 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEILKADKLILPGVGAFGAAMANLRERGLIEAIKEAVESGKPFLGIC 81 (204)
T ss_pred CEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHHhhCCEEEecCCCCHHHHHHHHHhcchHHHHHHHHhcCCCEEEEe
Confidence 56999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCC-eEEEEEeeeeeecCCCCCCc
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGD-HHVYFVHSYRAMPSDDNKEW 206 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~-~~~~~~H~~~v~~~~~~~~~ 206 (578)
+|||||...++|++...|||++++++.+|..+ ..+.||+||+++.+.+++++|.++++ .++|++|||++.+.. ...
T Consensus 82 lGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~-~~kvPHMGWN~l~~~~~~~l~~gi~~~~~~YFVHSY~~~~~~--~~~ 158 (204)
T COG0118 82 LGMQLLFERSEEGGGVKGLGLIPGKVVRFPAE-DLKVPHMGWNQVEFVRGHPLFKGIPDGAYFYFVHSYYVPPGN--PET 158 (204)
T ss_pred HhHHhhhhcccccCCCCCcceecceEEEcCCC-CCCCCccccceeeccCCChhhcCCCCCCEEEEEEEEeecCCC--Cce
Confidence 99999999998887779999999999999876 47899999999999978899999984 899999999987622 344
Q ss_pred EEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhc
Q 045794 207 VSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPK 251 (578)
Q Consensus 207 ~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~ 251 (578)
+.+.++++..+..++..+|++|+|||||.++..+..+++||++++
T Consensus 159 v~~~~~YG~~f~AaV~k~N~~g~QFHPEKSg~~Gl~lL~NFl~~~ 203 (204)
T COG0118 159 VVATTDYGEPFPAAVAKDNVFGTQFHPEKSGKAGLKLLKNFLEWI 203 (204)
T ss_pred EEEeccCCCeeEEEEEeCCEEEEecCcccchHHHHHHHHHHHhhc
Confidence 566688887798999999999999999999999999999999875
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=311.13 Aligned_cols=231 Identities=44% Similarity=0.691 Sum_probs=203.7
Q ss_pred ccceeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhH
Q 045794 265 KLAKRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPML 343 (578)
Q Consensus 265 ~~~~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~ 343 (578)
|...||||+||++ +|++| ++++.. . .+..||+++|+.|++.|++++|++||++... +.+.|+
T Consensus 1 ~~~~~ii~~iD~~---~g~~V~~~~~~~----------~-~~~~dp~~~a~~~~~~g~~~i~i~dl~~~~~---~~~~n~ 63 (232)
T TIGR03572 1 MLKKRIIPCLLLK---DGRLVKTVQFKD----------P-RYIGDPVNAARIYNAKGADELIVLDIDASKR---GREPLF 63 (232)
T ss_pred CCCceEEEEEEEE---CCeEEEeeccCC----------C-eECCCHHHHHHHHHHcCCCEEEEEeCCCccc---CCCCCH
Confidence 5678999999999 89877 444322 1 1356999999999999999999999999632 347889
Q ss_pred HHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhC
Q 045794 344 QVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY 423 (578)
Q Consensus 344 ~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (578)
++++++++++++|+++|||||+++| ++++++.|+++|++||+++++ |++++++.++|
T Consensus 64 ~~~~~i~~~~~~pv~~~ggi~~~~d-----------~~~~~~~G~~~vilg~~~l~~------------~~~~~~~~~~~ 120 (232)
T TIGR03572 64 ELISNLAEECFMPLTVGGGIRSLED-----------AKKLLSLGADKVSINTAALEN------------PDLIEEAARRF 120 (232)
T ss_pred HHHHHHHHhCCCCEEEECCCCCHHH-----------HHHHHHcCCCEEEEChhHhcC------------HHHHHHHHHHc
Confidence 9999999999999999999999977 999999999999999999985 47789999999
Q ss_pred CCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC
Q 045794 424 GNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD 503 (578)
Q Consensus 424 g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d 503 (578)
|+++|++++|++.+.+ + ..|++.++||++.+..++.++++.+++.|++++++|+++++
T Consensus 121 ~~~~i~vsld~~~~~~-------------------~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~ 178 (232)
T TIGR03572 121 GSQCVVVSIDVKKELD-------------------G---SDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRD 178 (232)
T ss_pred CCceEEEEEEeccCCC-------------------C---CcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 9888999999987411 0 01579999999988999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 504 GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 504 G~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
|+.+|+|+++++++++.+++|||++||+++++|+.++++..||+||++|+|||+
T Consensus 179 g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h~ 232 (232)
T TIGR03572 179 GTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLFHF 232 (232)
T ss_pred CCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhhC
Confidence 999999999999999999999999999999999999444699999999999995
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=271.22 Aligned_cols=200 Identities=38% Similarity=0.701 Sum_probs=171.5
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
++|+|+||+.||+.++.++|+.+|+++.+++.++++.++|+||+||++++...+..+++.++.+.++++++.++|+||||
T Consensus 2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~~~l~~~d~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIC 81 (210)
T CHL00188 2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSESELAQVHALVLPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGIC 81 (210)
T ss_pred cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCHHHhhhCCEEEECCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEEC
Confidence 46999999999999999999999999999998888889999999999988777777877788899999999999999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccC------CcccccCC-CeEEEEEeeeeeecC
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKD------SEILDDVG-DHHVYFVHSYRAMPS 200 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~------~~l~~~l~-~~~~~~~H~~~v~~~ 200 (578)
+|||+|++.+.+ +...|++++++++.++...+..+.||+||.++.++.+ +++|++++ ...+|++|++.+.+
T Consensus 82 lG~Qll~~~~~~-~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~~v~~~HS~~v~p- 159 (210)
T CHL00188 82 LGLHLLFETSEE-GKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLNPWAYFVHSYGVMP- 159 (210)
T ss_pred HHHHHHhhcccc-CCcCCccceeEEEEECCCCCCCccCccCCccceecCCcccccCChhhcCCCCCCEEEEeCccEecC-
Confidence 999999987544 4568999999999997543345789999999998765 56888887 78999999998752
Q ss_pred CCCCCcEEEEeecC-CceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhh
Q 045794 201 DDNKEWVSSTCNYG-DNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHP 250 (578)
Q Consensus 201 ~~~~~~~~~~~~~~-d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~ 250 (578)
.....+.++..++ +.++++++.+++||+|||||++...+..+++||++.
T Consensus 160 -~~~~~l~~t~~~~~~~~v~a~~~~~i~GvQFHPE~s~~~G~~il~nfl~~ 209 (210)
T CHL00188 160 -KSQACATTTTFYGKQQMVAAIEYDNIFAMQFHPEKSGEFGLWLLREFMKK 209 (210)
T ss_pred -CCCceEEEEEecCCcceEEEEecCCEEEEecCCccccHhHHHHHHHHHhh
Confidence 2234456666675 688999998899999999999977999999999864
|
|
| >PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=260.04 Aligned_cols=187 Identities=40% Similarity=0.772 Sum_probs=160.6
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEech
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLG 129 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG 129 (578)
|+|+||++||+.++.++|++.|+++.+++.++++.++|+|||||++++..++.++++.++.+.|++ ..++|+||||+|
T Consensus 2 i~iidyg~gN~~s~~~al~~~g~~~~~v~~~~~l~~~D~lIlPG~g~~~~~~~~L~~~gl~~~i~~--~~g~PvlGIClG 79 (192)
T PRK13142 2 IVIVDYGLGNISNVKRAIEHLGYEVVVSNTSKIIDQAETIILPGVGHFKDAMSEIKRLNLNAILAK--NTDKKMIGICLG 79 (192)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCEEEEeCHHHhccCCEEEECCCCCHHHHHHHHHHCCcHHHHHH--hCCCeEEEECHH
Confidence 899999999999999999999999999999999999999999999988888888887788888988 568999999999
Q ss_pred HHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcEEE
Q 045794 130 LQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSS 209 (578)
Q Consensus 130 ~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~~~ 209 (578)
||+|+..+.+ +...|||++|++|.+|.. ..+.||+||+.+.. ..++++ ..+|++|+|++. . .....+
T Consensus 80 mQlL~~~~~e-g~~~GLgll~~~V~rf~~--~~~vph~GWn~~~~--~~~l~~----~~~yFVhSy~v~-~---~~~v~~ 146 (192)
T PRK13142 80 MQLMYEHSDE-GDASGLGFIPGNISRIQT--EYPVPHLGWNNLVS--KHPMLN----QDVYFVHSYQAP-M---SENVIA 146 (192)
T ss_pred HHHHhhhccc-CCcCccCceeEEEEECCC--CCCCCcccccccCC--CCcccc----cEEEEECCCeEC-C---CCCEEE
Confidence 9999998866 456799999999999864 36789999998753 334443 478999999883 2 234567
Q ss_pred EeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhc
Q 045794 210 TCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPK 251 (578)
Q Consensus 210 ~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~ 251 (578)
.+.++..++.+++++|++|+|||||.+.+.+.+|+++|++-+
T Consensus 147 ~~~yg~~~~~~v~~~n~~g~QFHPEkS~~~G~~ll~nf~~~~ 188 (192)
T PRK13142 147 YAQYGADIPAIVQFNNYIGIQFHPEKSGTYGLQILRQAIQGG 188 (192)
T ss_pred EEECCCeEEEEEEcCCEEEEecCcccCcHhHHHHHHHHHhcc
Confidence 777776688888899999999999999989999999998754
|
|
| >PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-31 Score=259.30 Aligned_cols=197 Identities=40% Similarity=0.766 Sum_probs=164.5
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHH-HhCCCCEEEEec
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAY-IEKDRPFLGICL 128 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~-~~~g~PIlGICl 128 (578)
|+|+|||.+|..++.++|++.|+++.+++.++++.++|+|||||++++.+++..++..++...++++ .+.++|+||||+
T Consensus 2 i~iid~g~~n~~~v~~~l~~~g~~~~~~~~~~~l~~~d~lilPG~g~~~~~~~~l~~~~~~~~l~~~~~~~~~pvlGiC~ 81 (201)
T PRK13152 2 IALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICL 81 (201)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCeEEEECCHHHHcCCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHhCCCcEEEECH
Confidence 8999999999999999999999999999999889999999999999888877777766777777775 478999999999
Q ss_pred hHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCcE
Q 045794 129 GLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEWV 207 (578)
Q Consensus 129 G~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~~ 207 (578)
|||+|+.+..+++...++|++++++.++........+++||+++++..+++++++++ +..++++|++++...+ ...
T Consensus 82 G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~~~v~~~~~~~l~~~l~~~~~~~~vHS~~v~~~~---~~v 158 (201)
T PRK13152 82 GMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEILKQSPLYQGIPEKSDFYFVHSFYVKCKD---EFV 158 (201)
T ss_pred hHHHHhhcccccCCcCCcccccEEEEECCCCCCCcCCccCeEEEEECCCChhhhCCCCCCeEEEEcccEeecCC---CcE
Confidence 999999975555667889999999987643212346799999999988899998887 6789999999997643 223
Q ss_pred EEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 208 SSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 208 ~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
.+...++..++++++.++++|+|||||++...+..||++|++
T Consensus 159 ~a~~~~g~~~~~a~~~~~i~GvQFHPE~~~~~g~~ll~~Fl~ 200 (201)
T PRK13152 159 SAKAQYGHKFVASLQKDNIFATQFHPEKSQNLGLKLLENFAR 200 (201)
T ss_pred EEEECCCCEEEEEEecCCEEEEeCCCeecChhhHHHHHHHHh
Confidence 444444445777888889999999999987788999999986
|
|
| >PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-31 Score=255.87 Aligned_cols=194 Identities=40% Similarity=0.723 Sum_probs=160.8
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
++|+|+||++||..++.++|++.|+++++++.++++.++|+|||||++.+..++..+++..+.+.+++ .++||||||
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~~~~~d~iIlPG~G~~~~~~~~l~~~~l~~~i~~---~~~PilGIC 77 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDVILAADKLFLPGVGTAQAAMDQLRERELIDLIKA---CTQPVLGIC 77 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHHhCCCCEEEECCCCchHHHHHHHHHcChHHHHHH---cCCCEEEEC
Confidence 46999999999999999999999999999999988999999999999888888887776666666665 479999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCc
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEW 206 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~ 206 (578)
+|||+|+.++.+++...++|++++++.++... ..+.|++||+++.+..++++++.++ ...+|++|++.+. .. ..
T Consensus 78 lG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~~-~~~~p~~G~~~v~~~~~~~l~~~l~~~~~v~~~Hs~~lp---~~-~~ 152 (196)
T PRK13170 78 LGMQLLGERSEESGGVDCLGIIDGPVKKMTDF-GLPLPHMGWNQVTPQAGHPLFQGIEDGSYFYFVHSYAMP---VN-EY 152 (196)
T ss_pred HHHHHHhhhcccCCCCCCcccccEEEEECCCC-CCCCCccccceeEeCCCChhhhCCCcCCEEEEECeeecC---CC-Cc
Confidence 99999999876554467899999999886432 3567899999999888888998887 7899999998652 22 23
Q ss_pred EEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 207 VSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 207 ~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
..+++..+..+...++.+++||+|||||++...+..++++|++
T Consensus 153 ~la~s~~~~~~~~~~~~~~i~G~QFHPE~~~~~G~~~l~nfl~ 195 (196)
T PRK13170 153 TIAQCNYGEPFSAAIQKDNFFGVQFHPERSGAAGAQLLKNFLE 195 (196)
T ss_pred EEEEecCCCeEEEEEEcCCEEEEECCCCCcccccHHHHHHHhh
Confidence 4455544445555566789999999999998899999999986
|
|
| >PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-31 Score=256.80 Aligned_cols=197 Identities=39% Similarity=0.703 Sum_probs=161.8
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEech
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLG 129 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG 129 (578)
|+|+|||+||+.++.++++..+.++.+++.++++.++|+||+||++++..++..+++.++.+.++++++.++|+||||+|
T Consensus 2 i~iidyg~gNl~s~~~al~~~~~~~~~~~~~~~l~~~d~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pilGiC~G 81 (210)
T PRK14004 2 IAILDYGMGNIHSCLKAVSLYTKDFVFTSDPETIENSKALILPGDGHFDKAMENLNSTGLRSTIDKHVESGKPLFGICIG 81 (210)
T ss_pred EEEEECCCchHHHHHHHHHHcCCeEEEECCHHHhccCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHcCCCEEEECHh
Confidence 89999999999999999999999999999999999999999999999888888887778999999999999999999999
Q ss_pred HHHHhhhcccCC------CcCCCcccCceeeeecCCCCCCcceeeeEEEEEc--cCCcccccCC-CeEEEEEeeeeeecC
Q 045794 130 LQLLFQSSEENG------PVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQIT--KDSEILDDVG-DHHVYFVHSYRAMPS 200 (578)
Q Consensus 130 ~QlLa~a~~e~~------~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~--~~~~l~~~l~-~~~~~~~H~~~v~~~ 200 (578)
||+|+.++.|.+ ...|||++++++++++.. ..+.||+||+++..+ ..+++|.+++ ...+|++|++....
T Consensus 82 ~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~-~~~~ph~Gw~~v~~~~~~~~~lf~~l~~~~~v~~~HS~~~~~- 159 (210)
T PRK14004 82 FQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGK-DFKVPHIGWNRLQIRRKDKSKLLKGIGDQSFFYFIHSYRPTG- 159 (210)
T ss_pred HHHHHHhcccccCCCcCcccCCcceeEEEEEEcCCC-CCcCCccCcccceeccCCCCccccCCCCCCEEEEeceeecCC-
Confidence 999999887532 367999999999987532 357899999999876 4567888887 78999999985422
Q ss_pred CCCCCcEEEEeecCC-ce-EEEE-EeCCEEEEeeCCcccCcchHHHHHHHhhhc
Q 045794 201 DDNKEWVSSTCNYGD-NF-IASV-RRGNVHAVQFHPEKSGDVGLSVLRRFLHPK 251 (578)
Q Consensus 201 ~~~~~~~~~~~~~~d-~~-iegi-~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~ 251 (578)
......+..+.. +. ..++ ..+++||+|||||++...+..|+++|++.+
T Consensus 160 ---~~~l~~sa~~~~~g~~~~a~~~~~~i~GvQFHPE~s~~~G~~iL~nfl~~~ 210 (210)
T PRK14004 160 ---AEGNAITGLCDYYQEKFPAVVEKENIFGTQFHPEKSHTHGLKLLENFIEFV 210 (210)
T ss_pred ---CCcceEEEeeeECCEEEEEEEecCCEEEEeCCcccCchhHHHHHHHHHhhC
Confidence 111222222221 22 2334 467999999999998888999999999854
|
|
| >PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=255.52 Aligned_cols=201 Identities=42% Similarity=0.771 Sum_probs=162.2
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCC--eEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHH-HhCCCCEE
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGF--GIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAY-IEKDRPFL 124 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv--~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~-~~~g~PIl 124 (578)
++|+|+|||+|+..++.++|++.|+ ++.+++.++++.++|+|||||++.+..++.+++..++.+.+.+. .+.++|+|
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Pvl 81 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAVAAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFL 81 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHhcCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEE
Confidence 5799999999999999999999998 88889988899999999999998777666666655555555554 46899999
Q ss_pred EEechHHHHhhhcccCCCcCCCcccCceeeeecC-CCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCC
Q 045794 125 GICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDS-SNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 125 GIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~-~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~ 202 (578)
|||+|||+|+....|++...|+|++++++.++.+ ....+.|++||+++.+..++++|.+++ .+.++++|++.+...+
T Consensus 82 GiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G~~~v~~~~~~~lf~~~~~~~~v~~~Hs~~v~~~~- 160 (209)
T PRK13146 82 GICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMGWNTVDQTRDHPLFAGIPDGARFYFVHSYYAQPAN- 160 (209)
T ss_pred EECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccChHHeeeCCCChhccCCCCCCEEEEEeEEEEEcCC-
Confidence 9999999999986666678899999999988521 112357899999999988889999887 7899999999987554
Q ss_pred CCCcEEEEeecCCceEEEEE-eCCEEEEeeCCcccCcchHHHHHHHhhhc
Q 045794 203 NKEWVSSTCNYGDNFIASVR-RGNVHAVQFHPEKSGDVGLSVLRRFLHPK 251 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~-~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~ 251 (578)
...+.+++..+.. ++++. .+++||+|||||++...+..|+++|++..
T Consensus 161 -~~~~la~s~~~~~-~~a~~~~~~i~GvQFHPE~s~~~G~~ll~nfl~~~ 208 (209)
T PRK13146 161 -PADVVAWTDYGGP-FTAAVARDNLFATQFHPEKSQDAGLALLRNFLAWL 208 (209)
T ss_pred -CCcEEEEEcCCCE-EEEEEecCCEEEEEcCCcccHHHHHHHHHHHHhhc
Confidence 2345555544333 34444 67999999999998778999999999763
|
|
| >PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=249.68 Aligned_cols=196 Identities=50% Similarity=0.861 Sum_probs=163.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEech
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLG 129 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG 129 (578)
|+|+|||++|..++.++|+++|++++++..++++.++|+||+|||+++...+.++...++.+.++++++.++|+||||+|
T Consensus 2 i~vid~g~gn~~~~~~~l~~~g~~v~~~~~~~~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G 81 (199)
T PRK13181 2 IAIIDYGAGNLRSVANALKRLGVEAVVSSDPEEIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLG 81 (199)
T ss_pred EEEEeCCCChHHHHHHHHHHCCCcEEEEcChHHhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHh
Confidence 89999999999999999999999999998888899999999999887766666666567888999999999999999999
Q ss_pred HHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCcEE
Q 045794 130 LQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEWVS 208 (578)
Q Consensus 130 ~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~~~ 208 (578)
||+|+.++.+ +...|+|++++++.+.... ..+.+++||+.+.+..++++++.++ ...++.+|++++.+.+. ....
T Consensus 82 ~Qll~~~~~~-~~~~glg~l~~~v~~~~~~-~~~~~~~G~~~v~~~~~~~lf~~l~~~~~~~~~Hs~~v~~~~~--~~~l 157 (199)
T PRK13181 82 MQLLFESSEE-GNVKGLGLIPGDVKRFRSE-PLKVPQMGWNSVKPLKESPLFKGIEEGSYFYFVHSYYVPCEDP--EDVL 157 (199)
T ss_pred HHHhhhhccc-CCcCCcceEEEEEEEcCCC-CCCCCccCccccccCCCChhHcCCCCCCEEEEeCeeEeccCCc--ccEE
Confidence 9999998765 3567899999999875321 1345789999998887888998887 67889999998865443 2445
Q ss_pred EEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 209 STCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 209 ~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
+++..+..++++++.+++||+|||||++...+..++++|++
T Consensus 158 A~s~~~~~~~~~~~~~~i~GvQFHPE~~~~~g~~ll~nfl~ 198 (199)
T PRK13181 158 ATTEYGVPFCSAVAKDNIYAVQFHPEKSGKAGLKLLKNFAE 198 (199)
T ss_pred EEEcCCCEEEEEEECCCEEEEECCCccCCHHHHHHHHHHHh
Confidence 55554455666777889999999999987788999999986
|
|
| >cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS) | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=244.23 Aligned_cols=197 Identities=51% Similarity=0.934 Sum_probs=157.2
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEech
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLG 129 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG 129 (578)
|+|+|+|++|..++.++|+++|+++++++..+++.++|+||||||+.+......+...++.+.++++.+.++||||||+|
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G 80 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEEILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLG 80 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHHhccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHH
Confidence 58999999999999999999999999999888899999999999876655444454456788999999999999999999
Q ss_pred HHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCcEE
Q 045794 130 LQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEWVS 208 (578)
Q Consensus 130 ~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~~~ 208 (578)
||+|+.++.+++...++|++++++.+..+....+.+++||+.+..+.++++|.+++ .+.++++|++++...+. ....
T Consensus 81 ~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~v~~~~~~~lf~~l~~~~~v~~~Hs~~v~~~~~--~~~l 158 (198)
T cd01748 81 MQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEITKESPLFKGIPDGSYFYFVHSYYAPPDDP--DYIL 158 (198)
T ss_pred HHHhccccccCCCCCCCCCcceEEEECCCCCCceEEEeccceEEECCCChhhhCCCCCCeEEEEeEEEEecCCc--ceEE
Confidence 99999987666667889999999987321000124689999999988888998887 68999999999875432 3344
Q ss_pred EEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHh
Q 045794 209 STCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFL 248 (578)
Q Consensus 209 ~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl 248 (578)
+++..+..+....+.+++||+|||||++...+..++++|+
T Consensus 159 a~s~~~~~~~~~~~~~~i~GvQFHPE~~~~~g~~~~~nf~ 198 (198)
T cd01748 159 ATTDYGGKFPAAVEKDNIFGTQFHPEKSGKAGLKLLKNFL 198 (198)
T ss_pred EEecCCCeEEEEEEcCCEEEEECCCccccHhHHHHHHhhC
Confidence 4443333333334467999999999998778899999995
|
Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-29 Score=229.75 Aligned_cols=224 Identities=20% Similarity=0.278 Sum_probs=187.2
Q ss_pred eeEEEeeeEeecCCCCEEEEecceeeeeeccc-cccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTK-ENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~-~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
|++||+|||+ +|+||+-||- ++++|.| ++..+.++||+++|+.+...|++.+|++|||++.+ .+.|.++|
T Consensus 1 m~vi~viDik---~g~vV~gKsg--~re~Y~Pis~~~~~s~dP~eia~~lr~rgar~vYiADLdaI~g----~g~n~d~i 71 (229)
T COG1411 1 MKVIFVIDIK---DGKVVVGKSG--EREEYRPISSRYCLSDDPLEIAEALRERGARFVYIADLDAILG----GGDNADTI 71 (229)
T ss_pred CceEEEEEec---cCcEEeccCC--CcccccCcceeecCCCChHHHHHHHhhccCceEEeeehHHHhc----CCCcHHHH
Confidence 5899999999 9997743333 3467988 57677789999999999999999999999999864 36789999
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
+++.... +++++-|+|++++ .++.+.. +++.+++|..+++- ++.++ .
T Consensus 72 ~~l~~~~--~~ivD~Gv~dL~s-----------~~~~l~~-~~~~vv~TEt~e~~------------e~~e~-------~ 118 (229)
T COG1411 72 RELSSLE--KVIVDVGVRDLES-----------HAHRLIP-AETAVVGTETLEDT------------EEDEE-------G 118 (229)
T ss_pred HHHHhhh--hheeecccccccC-----------HHHhcCC-Ccceeeccchhhhh------------hhhhc-------c
Confidence 9998754 4789999998876 7777754 88999999999852 22222 5
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
++++|+|+|.+.+. .-|.+ +.++..+.+....---+|+.|+.+.|++
T Consensus 119 r~vvslD~k~~~Ll-----------------------------~~~~e----d~le~Vk~l~~~~~~~lIvLDi~aVGt~ 165 (229)
T COG1411 119 RIVVSLDVKGGELL-----------------------------GPWLE----DFLETVKDLNYRRDPGLIVLDIGAVGTK 165 (229)
T ss_pred ceEEEEecCCCeec-----------------------------CCCch----hHHHHHHHHhccCCCCeEEEEccccccc
Confidence 89999999987553 12322 4678888888887788999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHH
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKE 567 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~ 567 (578)
+|||.+++..+......||+.+|||+.+||+..++. +|++||++|+|+|.|.++++..+.
T Consensus 166 ~G~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~~-~Gv~gvLvaTalh~G~vple~~~~ 225 (229)
T COG1411 166 SGPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLG-MGVSGVLVATALHEGVVPLEVEQA 225 (229)
T ss_pred cCCCHHHHHHHHHhccCceeecCCcCcHHHHHHHhc-CCCceeeehhhhhcCcCcHHHHhc
Confidence 999999999999999999999999999999999986 999999999999999999887653
|
|
| >PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=238.15 Aligned_cols=200 Identities=47% Similarity=0.863 Sum_probs=160.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEech
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLG 129 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG 129 (578)
|+|+|++.+|..++.++|+++|+++.+++.++++.++|+||||||+.+.+....+...++.++|+++.+.++|+||||+|
T Consensus 2 i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~~~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G 81 (205)
T PRK13141 2 IAIIDYGMGNLRSVEKALERLGAEAVITSDPEEILAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLG 81 (205)
T ss_pred EEEEEcCCchHHHHHHHHHHCCCeEEEECCHHHhccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHH
Confidence 89999999999999999999999999999888899999999999876655555544456788999999999999999999
Q ss_pred HHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCcEE
Q 045794 130 LQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEWVS 208 (578)
Q Consensus 130 ~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~~~ 208 (578)
+|+|+..+.+.+...++|++++++.+.........++.|++.+.++.++++++.++ ...++.+|++++...+ ...+.
T Consensus 82 ~Qll~~~~~~~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~~i~~~~~~~l~~~l~~~~~v~~~Hs~~v~~~~--~~~v~ 159 (205)
T PRK13141 82 MQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLELKKESPLLKGIPDGAYVYFVHSYYADPCD--EEYVA 159 (205)
T ss_pred HHHhhhccccCCCCCccceEEEEEEEcCCCCCCcccEecCccceeCCCChhhhCCCCCCEEEEECeeEeccCC--cCeEE
Confidence 99999976554567789999999887431112346788999999888889998887 6788999999986432 22333
Q ss_pred EEeecCCceEEEEE-eCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 209 STCNYGDNFIASVR-RGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 209 ~~~~~~d~~iegi~-~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
+....+ ..++++. .+++||+|||||+....+..+|++|++.++
T Consensus 160 a~~~~~-~~~~a~~~~~~i~GvQfHPE~~~~~g~~l~~~fl~~~~ 203 (205)
T PRK13141 160 ATTDYG-VEFPAAVGKDNVFGAQFHPEKSGDVGLKILKNFVEMVE 203 (205)
T ss_pred EEEeCC-cEEEEEEecCCEEEEeCCCccchHHHHHHHHHHHHHhh
Confidence 433322 3455555 569999999999987788999999998763
|
|
| >TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=236.95 Aligned_cols=194 Identities=43% Similarity=0.787 Sum_probs=155.5
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEech
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLG 129 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG 129 (578)
|+|+|++.+|..++.++|+.+|+++++++.+++++++|+||+||++++...+.++....+...++++++.++|+||||+|
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~~~l~~~d~lii~G~~~~~~~~~~l~~~~~~~l~~~~~~~~~pvlGiC~G 80 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDSKEAELADKLILPGVGAFGAAMARLRENGLDLFVELVVRLGKPVLGICLG 80 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCHHHhccCCEEEECCCCCHHHHHHHHHHcCcHHHHHHHHhCCCCEEEECHH
Confidence 57999999999999999999999999999888889999999999776655555665433333447788899999999999
Q ss_pred HHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCcEE
Q 045794 130 LQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEWVS 208 (578)
Q Consensus 130 ~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~~~ 208 (578)
||+|+.++.+++...|+|++++++.+... ...+++||..+.....++++++++ .+.++++|++.+...+ ....
T Consensus 81 ~Qll~~~~~~~~~~~glg~~~~~v~~~~~---~~~~~~g~~~~~~~~~~~l~~~l~~~~~v~~~Hs~~v~~~~---~~~~ 154 (196)
T TIGR01855 81 MQLLFERSEEGGGVPGLGLIKGNVVKLEA---RKVPHMGWNEVHPVKESPLLNGIDEGAYFYFVHSYYAVCEE---EAVL 154 (196)
T ss_pred HHHhhhccccCCCCCCcceeeEEEEECCC---CCCCcccCeeeeeCCCChHHhCCCCCCEEEEECeeEecCCC---CcEE
Confidence 99999987666678899999999877321 146789999998888888998887 6899999999886433 2333
Q ss_pred EEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 209 STCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 209 ~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
+..+.+..+...++.+++||+|||||++...+..++++|++
T Consensus 155 a~~~~g~~~~~~~~~~~i~GvQFHPE~~~~~g~~ll~~f~~ 195 (196)
T TIGR01855 155 AYADYGEKFPAAVQKGNIFGTQFHPEKSGKTGLKLLENFLE 195 (196)
T ss_pred EEEcCCcEEEEEEecCCEEEEECCCccCcHhHHHHHHHHHh
Confidence 43333334445556789999999999987788999999986
|
This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6. |
| >PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=235.97 Aligned_cols=199 Identities=45% Similarity=0.863 Sum_probs=156.9
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
++|+|+|+++++..++.++|+++|+++.+++.+.++.++|+||||||+.+.....++. .+.+.++++++.++|+||||
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~d~iii~G~~~~~~~~~~~~--~~~~~i~~~~~~~~PilgIC 78 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEEILDADGIVLPGVGAFGAAMENLS--PLRDVILEAARSGKPFLGIC 78 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHHHccCCEEEECCCCCHHHHHHHHH--HHHHHHHHHHHcCCCEEEEC
Confidence 4799999999999999999999999999998887889999999999766554455554 56788999999999999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcE
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWV 207 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~ 207 (578)
+|+|+|+.++.++....++|++++++.++.+. ...+++||+.+.++.+++++++++....+.+|++++...+. ..+
T Consensus 79 ~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~--~~~~~~g~~~v~~~~~~~l~~~l~~~~~~~~Hs~~~~~~~~--~~~ 154 (200)
T PRK13143 79 LGMQLLFESSEEGGGVRGLGLFPGRVVRFPAG--VKVPHMGWNTVKVVKDCPLFEGIDGEYVYFVHSYYAYPDDE--DYV 154 (200)
T ss_pred HHHHHHhhhhccCCCCCCcceeeEEEEEcCCC--CCCCeecceEEEEcCCChhhccCCCcEEEEEeeeeeCCCCc--ceE
Confidence 99999999876666678899999998764321 33467899999988888888777766678899998864332 233
Q ss_pred EEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 208 SSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 208 ~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
.++...+.....+...+++||+|||||++...+.+||++|++.++
T Consensus 155 la~~~~~~~~~~~~~~~~~~gvQfHPE~~~~~g~~i~~~f~~~~~ 199 (200)
T PRK13143 155 VATTDYGIEFPAAVCNDNVFGTQFHPEKSGETGLKILENFVELIK 199 (200)
T ss_pred EEEEcCCCEEEEEEEcCCEEEEeCCCccchHHHHHHHHHHHHHHh
Confidence 333332223334445679999999999987778899999998764
|
|
| >TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-25 Score=213.75 Aligned_cols=177 Identities=25% Similarity=0.392 Sum_probs=134.9
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCc---cCCCCCC--EEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP---EDILNAN--RLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFL 124 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~---~dl~~~D--GlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIl 124 (578)
|+|+|+++++..++.++|+++|+++.++++. +++.++| |||||||.....+. ....+++++.+.++|+|
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~glii~Gg~~~~~~~------~~~~~i~~~~~~~~Pil 74 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYAE------NAPRADEKIFELGVPVL 74 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEEeCCCCHHHHhhcCCCEEEECCCCCCcCcC------CchHHHHHHHhCCCCEE
Confidence 5799999999999999999999999888654 3454444 99999986432221 22456778888999999
Q ss_pred EEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCC
Q 045794 125 GICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDN 203 (578)
Q Consensus 125 GIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~ 203 (578)
|||+|||+|+.+ +| +++.+ ...+++|+.++.++..++++..++ .+.++++|++.+...+.
T Consensus 75 GIC~G~Qll~~~---------lg---g~v~~------~~~~~~g~~~v~~~~~~~l~~~~~~~~~~~~~H~~~v~~l~~- 135 (188)
T TIGR00888 75 GICYGMQLMAKQ---------LG---GEVGR------AEKREYGKAELEILDEDDLFRGLPDESTVWMSHGDKVKELPE- 135 (188)
T ss_pred EECHHHHHHHHh---------cC---ceEec------CCCccceeEEEEEecCCHhhcCCCCCcEEEeEccceeecCCC-
Confidence 999999999994 22 56654 223678999999988888888877 68899999999865543
Q ss_pred CCcEEEEeecCCceEEEEEeC--CEEEEeeCCcccCc-chHHHHHHHhh-hccC
Q 045794 204 KEWVSSTCNYGDNFIASVRRG--NVHAVQFHPEKSGD-VGLSVLRRFLH-PKTN 253 (578)
Q Consensus 204 ~~~~~~~~~~~d~~iegi~~~--~i~gvQFHPE~~~~-~~~~l~~~Fl~-~~~~ 253 (578)
.+.. .....+..+++++.+ ++||+|||||++.+ ++..||++|++ .++|
T Consensus 136 -~~~v-la~~~~~~v~a~~~~~~~~~g~QfHPE~~~~~~g~~i~~~f~~~~~~~ 187 (188)
T TIGR00888 136 -GFKV-LATSDNCPVAAMAHEEKPIYGVQFHPEVTHTEYGNELLENFVYDVCGC 187 (188)
T ss_pred -CCEE-EEECCCCCeEEEEECCCCEEEEeeCCccCCChhhHHHHHHHHHHhhCC
Confidence 2222 222234678999843 89999999999764 78999999998 6555
|
separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit. |
| >COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-25 Score=224.06 Aligned_cols=177 Identities=21% Similarity=0.274 Sum_probs=132.0
Q ss_pred CCCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC---C--CCCCEEEECCC-CCchHHHHHHHhhcHHHHHHHHHh
Q 045794 45 SSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED---I--LNANRLIFPGV-GAFAAAMDVLNKTGMAEALCAYIE 118 (578)
Q Consensus 45 ~~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d---l--~~~DGlILpGG-g~~~~~~~~l~~~~l~~~i~~~~~ 118 (578)
....+|+++||| .+.|++|.|..+|+++.++++... + .++|||+|+.| |++.... ...+.++++++
T Consensus 177 ~~~~~Vv~iD~G--vK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP~~~~------~~i~~ik~l~~ 248 (368)
T COG0505 177 EPGKHVVVIDFG--VKRNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDPAPLD------YAIETIKELLG 248 (368)
T ss_pred CCCcEEEEEEcC--ccHHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCCChhHHH------HHHHHHHHHhc
Confidence 357789999976 999999999999999999987643 2 57999999887 4443222 22457888888
Q ss_pred CCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeee--EEEEEccCCcccccCCCeEEEEEeeee
Q 045794 119 KDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW--NALQITKDSEILDDVGDHHVYFVHSYR 196 (578)
Q Consensus 119 ~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~--~~i~~~~~~~l~~~l~~~~~~~~H~~~ 196 (578)
..+|+||||||||||+.+ .|+.+++++ |+++ +.+.|.... ..+ .-..++|+|.
T Consensus 249 ~~iPifGICLGHQllalA-------~Ga~T~Kmk---FGHr-G~NhPV~dl~tgrv--------------~ITSQNHGya 303 (368)
T COG0505 249 TKIPIFGICLGHQLLALA-------LGAKTYKMK---FGHR-GANHPVKDLDTGRV--------------YITSQNHGYA 303 (368)
T ss_pred cCCCeEEEcHHHHHHHHh-------cCCceeecc---cCCC-CCCcCcccccCCeE--------------EEEecCCcee
Confidence 889999999999999995 476666655 6665 444443210 111 2336899999
Q ss_pred eecCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc--chHHHHHHHhhhccCC
Q 045794 197 AMPSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD--VGLSVLRRFLHPKTNI 254 (578)
Q Consensus 197 v~~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~--~~~~l~~~Fl~~~~~~ 254 (578)
+++............+.+|+.+||+++ .|+|++|||||.+++ |...||+.|++.++..
T Consensus 304 Vd~~s~~~~~~vth~nlnDgTvEGi~h~~~P~fSVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~ 365 (368)
T COG0505 304 VDEDSLVETLKVTHVNLNDGTVEGIRHKDLPAFSVQYHPEASPGPHDTRYLFDEFIELMEAA 365 (368)
T ss_pred cChhhcCCCceeEEEeCCCCCccceecCCCceEEEccCCCCCCCCcccHHHHHHHHHHHHHh
Confidence 986532222135566778899999995 489999999999865 8899999999998764
|
|
| >PRK06895 putative anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=210.18 Aligned_cols=178 Identities=20% Similarity=0.324 Sum_probs=134.3
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCC----ccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQT----PEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~----~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
++|+|+|+.+++.+++.++|+++|+++.+++. ++++..+|+|||+||...... .. .+.++++. ++.++|+
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~~~d~iIi~gGp~~~~~---~~--~~~~~i~~-~~~~~Pi 75 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVENFSHILISPGPDVPRA---YP--QLFAMLER-YHQHKSI 75 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhccCCEEEECCCCCChHH---hh--HHHHHHHH-hcCCCCE
Confidence 57999999999999999999999999988773 245678999998877532211 11 23456665 5678999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCC
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~ 202 (578)
||||+|||+|+.+ .| +++.++ .+.++.+|..+....+++++++++ .+.++++|++.+.....
T Consensus 76 LGIClG~Qlla~~-------~G-----g~V~~~-----~~~~~g~~~~v~~~~~~~l~~~~~~~~~v~~~Hs~~v~~~~l 138 (190)
T PRK06895 76 LGVCLGHQTLCEF-------FG-----GELYNL-----NNVRHGQQRPLKVRSNSPLFDGLPEEFNIGLYHSWAVSEENF 138 (190)
T ss_pred EEEcHHHHHHHHH-------hC-----CeEeec-----CCCccCceEEEEECCCChhhhcCCCceEEEcchhheeccccc
Confidence 9999999999995 23 566542 123455677787777888998887 68899999998864222
Q ss_pred CCCcEEEEeecCCceEEEEEeC--CEEEEeeCCcc-cCcchHHHHHHHhh
Q 045794 203 NKEWVSSTCNYGDNFIASVRRG--NVHAVQFHPEK-SGDVGLSVLRRFLH 249 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~~~--~i~gvQFHPE~-~~~~~~~l~~~Fl~ 249 (578)
+ ..+.....++++.+++++++ |+||+|||||+ ....+..++++|++
T Consensus 139 p-~~l~~~a~~~~~~i~a~~~~~~pi~GvQFHPE~~~~~~g~~il~nf~~ 187 (190)
T PRK06895 139 P-TPLEITAVCDENVVMAMQHKTLPIYGVQFHPESYISEFGEQILRNWLA 187 (190)
T ss_pred C-CCeEEEEECCCCcEEEEEECCCCEEEEEeCCCcCCCcchHHHHHHHHh
Confidence 2 33556666677889999864 59999999997 34478899999986
|
|
| >COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=201.30 Aligned_cols=177 Identities=27% Similarity=0.386 Sum_probs=132.4
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc-C-----CCCCCEEEE-CCCCCchHHHHHHHhhc-HHHHHHHHHhC
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE-D-----ILNANRLIF-PGVGAFAAAMDVLNKTG-MAEALCAYIEK 119 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~-d-----l~~~DGlIL-pGGg~~~~~~~~l~~~~-l~~~i~~~~~~ 119 (578)
++|+++|+.+++.+|+++++++.|.++.+++.+. + ..++|+||| ||++.+.+. + ..+.|+++ ..
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~-------G~~~~~i~~~-~~ 73 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDA-------GISLELIRRF-AG 73 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHc-------chHHHHHHHh-cC
Confidence 4699999999999999999999999999887752 1 246899999 666654421 2 35667776 67
Q ss_pred CCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeee
Q 045794 120 DRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAM 198 (578)
Q Consensus 120 g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~ 198 (578)
++||||||||||.|+++ .| +++.+ .+.+-.|...........+|++++ ++.+..+||..+.
T Consensus 74 ~~PiLGVCLGHQai~~~-------fG-----g~V~~------a~~~~HGK~s~i~h~g~~iF~glp~~f~v~RYHSLvv~ 135 (191)
T COG0512 74 RIPILGVCLGHQAIAEA-------FG-----GKVVR------AKEPMHGKTSIITHDGSGLFAGLPNPFTVTRYHSLVVD 135 (191)
T ss_pred CCCEEEECccHHHHHHH-------hC-----CEEEe------cCCCcCCeeeeeecCCcccccCCCCCCEEEeeEEEEec
Confidence 79999999999999995 24 66665 223445655533344578999999 7999999999887
Q ss_pred cCCCCCCcEEEEeecCC-ceEEEEEe--CCEEEEeeCCcccC-cchHHHHHHHhhhc
Q 045794 199 PSDDNKEWVSSTCNYGD-NFIASVRR--GNVHAVQFHPEKSG-DVGLSVLRRFLHPK 251 (578)
Q Consensus 199 ~~~~~~~~~~~~~~~~d-~~iegi~~--~~i~gvQFHPE~~~-~~~~~l~~~Fl~~~ 251 (578)
+...+ ..+..++...+ +.++|+++ .|++|+|||||+.- ..+.+|++||++++
T Consensus 136 ~~~lP-~~l~vtA~~~d~~~IMai~h~~~pi~gvQFHPESilT~~G~~il~Nfl~~~ 191 (191)
T COG0512 136 PETLP-EELEVTAESEDGGVIMAVRHKKLPIYGVQFHPESILTEYGHRILENFLRLA 191 (191)
T ss_pred CCCCC-CceEEEEEeCCCCEEEEEeeCCCCEEEEecCCccccccchHHHHHHHHhhC
Confidence 63332 23444444433 58999996 48999999999854 47899999999863
|
|
| >cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=208.85 Aligned_cols=172 Identities=23% Similarity=0.394 Sum_probs=129.6
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc-----CCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE-----DILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFL 124 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~-----dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIl 124 (578)
|+|+|+++++..++.++|+++|+++++++... ++.++||||||||.....+.. .....++..+.++|+|
T Consensus 1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgvIl~Gg~~~~~~~~------~~~~~~~~~~~~~Pil 74 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEED------APRVDPEIFELGVPVL 74 (181)
T ss_pred CEEEECCCchHHHHHHHHHhcCceEEEecCCCChhhhcccCCCEEEECCCcccccccc------cchhhHHHHhcCCCEE
Confidence 57999999999999999999999998887653 467899999999864322111 0122344455699999
Q ss_pred EEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCC
Q 045794 125 GICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDN 203 (578)
Q Consensus 125 GIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~ 203 (578)
|||+|||+|+.+ .| +++.+ ...+++|+..+..+..++++.+++ .+.++++|++.+...+..
T Consensus 75 GIC~G~Qll~~~-------~g-----g~v~~------~~~~~~G~~~v~~~~~~~l~~~~~~~~~~~~~H~~~v~~l~~~ 136 (181)
T cd01742 75 GICYGMQLIAKA-------LG-----GKVER------GDKREYGKAEIEIDDSSPLFEGLPDEQTVWMSHGDEVVKLPEG 136 (181)
T ss_pred EEcHHHHHHHHh-------cC-----CeEEe------CCCCcceEEEEEecCCChhhcCCCCceEEEcchhhhhhhcCCC
Confidence 999999999994 22 56655 223678999988888888998887 688899999987655432
Q ss_pred CCcEEEEeecCCceEEEEEeC--CEEEEeeCCcccCc-chHHHHHHHh
Q 045794 204 KEWVSSTCNYGDNFIASVRRG--NVHAVQFHPEKSGD-VGLSVLRRFL 248 (578)
Q Consensus 204 ~~~~~~~~~~~d~~iegi~~~--~i~gvQFHPE~~~~-~~~~l~~~Fl 248 (578)
....++. .+..+++++.+ ++||+|||||++.. ++..+|++|+
T Consensus 137 -~~~la~~--~~~~i~a~~~~~~~~~g~QfHPE~~~~~~g~~ll~~f~ 181 (181)
T cd01742 137 -FKVIASS--DNCPVAAIANEEKKIYGVQFHPEVTHTEKGKEILKNFL 181 (181)
T ss_pred -cEEEEeC--CCCCEEEEEeCCCcEEEEEcCCccccCcChHHHHHhhC
Confidence 1222332 35678999853 89999999999864 8899999995
|
Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >PLN02347 GMP synthetase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=234.99 Aligned_cols=260 Identities=20% Similarity=0.287 Sum_probs=168.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCeEEEeCCc---cCCC--CCCEEEECCCCCchHHH--HHHHhhcHHHHHHHHHhCCC
Q 045794 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP---EDIL--NANRLIFPGVGAFAAAM--DVLNKTGMAEALCAYIEKDR 121 (578)
Q Consensus 49 ~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~---~dl~--~~DGlILpGGg~~~~~~--~~l~~~~l~~~i~~~~~~g~ 121 (578)
+|+|+|||+++.+++.++++++|+.++++++. +++. ++||||||||+....+. .++. ...++.+.+.++
T Consensus 12 ~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~----~~i~~~~~~~~i 87 (536)
T PLN02347 12 VVLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVEGAPTVP----EGFFDYCRERGV 87 (536)
T ss_pred EEEEEECCCcHHHHHHHHHHHCCCeEEEEECCCCHHHHhcCCCCEEEECCCCCcccccCCchhh----HHHHHHHHhcCC
Confidence 59999999999999999999999998888654 3343 68999999986433221 1221 123333345789
Q ss_pred CEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-C--eEEEEEeeeeee
Q 045794 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-D--HHVYFVHSYRAM 198 (578)
Q Consensus 122 PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~--~~~~~~H~~~v~ 198 (578)
||||||+|||+|+.+ .| +++.+. ..+++|+..+.+..++++|.+++ . ..+|++|++.+.
T Consensus 88 PILGIClG~QlLa~a-------lG-----G~V~~~------~~~e~G~~~v~i~~~~~Lf~~l~~~~~~~v~~~Hsd~V~ 149 (536)
T PLN02347 88 PVLGICYGMQLIVQK-------LG-----GEVKPG------EKQEYGRMEIRVVCGSQLFGDLPSGETQTVWMSHGDEAV 149 (536)
T ss_pred cEEEECHHHHHHHHH-------cC-----CEEEec------CCcccceEEEEEcCCChhhhcCCCCceEEEEEEEEEEee
Confidence 999999999999994 23 677652 23578999998888888998887 3 689999999886
Q ss_pred cCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccC-cchHHHHHHHh-hhccCCCCCCCcccccccceeEEEee
Q 045794 199 PSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSG-DVGLSVLRRFL-HPKTNIPKKPTEGKALKLAKRVIACL 274 (578)
Q Consensus 199 ~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~-~~~~~l~~~Fl-~~~~~~~~~~~~~~~~~~~~riIp~i 274 (578)
..|.. ....+++ .++.++++++ +++||+|||||++. ..+..|++||+ +.+++.+.+.+..-....-.++.-.
T Consensus 150 ~lP~g-~~vlA~s--~~~~iaai~~~~~~i~GvQFHPE~~~t~~G~~iL~NFl~~ic~~~~~~~~~~~~~~~i~~i~~~- 225 (536)
T PLN02347 150 KLPEG-FEVVAKS--VQGAVVAIENRERRIYGLQYHPEVTHSPKGMETLRHFLFDVCGVTADWKMQDVLEEQIELIKAT- 225 (536)
T ss_pred eCCCC-CEEEEEe--CCCcEEEEEECCCCEEEEEccCCCCccchHHHHHHHHHHHHhCcCCCcCcchHHHHHHHHHHHH-
Confidence 55532 1223333 3456799984 68999999999986 47899999998 5666666665432221111122211
Q ss_pred eEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHH-cCCCeEEEEecc-cCCCCCCCCchhHHHHHHHhh
Q 045794 275 DVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYK-EGADEISFLNIT-GFRDFPLGDLPMLQVLRLTSE 351 (578)
Q Consensus 275 Dl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~-~g~~~i~~~Dl~-~~~~~~~~~~~~~~~i~~i~~ 351 (578)
+.. +++++ ++.|.. |-.-+|....+ .| +.++-+=+| +.. ......+..+++++
T Consensus 226 -~~~--~~~vvvalSGGV----------------DSsvla~l~~~alG-~~v~av~id~g~~----~~~E~~~~~~~~a~ 281 (536)
T PLN02347 226 -VGP--DEHVICALSGGV----------------DSTVAATLVHKAIG-DRLHCVFVDNGLL----RYKEQERVMETFKR 281 (536)
T ss_pred -hcc--CCeEEEEecCCh----------------hHHHHHHHHHHHhC-CcEEEEEEeCCCC----ChhHHHHHHHHHHH
Confidence 121 35544 666643 22223333333 46 556655554 321 11223455566777
Q ss_pred hccccEE
Q 045794 352 NVFVPLT 358 (578)
Q Consensus 352 ~~~~pi~ 358 (578)
+.++++.
T Consensus 282 ~lgi~~~ 288 (536)
T PLN02347 282 DLHLPVT 288 (536)
T ss_pred HcCCcEE
Confidence 7777765
|
|
| >PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-24 Score=211.23 Aligned_cols=196 Identities=26% Similarity=0.401 Sum_probs=145.8
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHh-hcHHHHHHHHHhCCCCEEEE
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNK-TGMAEALCAYIEKDRPFLGI 126 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~-~~l~~~i~~~~~~g~PIlGI 126 (578)
++|+|+++ .|.+.+..++|+++|+++.+++.++++.++|+||||||.+ ..+..+.. .++.+.|+++++.++|+|||
T Consensus 2 m~igVLa~-qG~~~e~~~aL~~lG~ev~~v~~~~~L~~~DgLILPGGfs--~~~~~L~~~~gl~~~I~~~v~~g~PvLGi 78 (248)
T PLN02832 2 MAIGVLAL-QGSFNEHIAALRRLGVEAVEVRKPEQLEGVSGLIIPGGES--TTMAKLAERHNLFPALREFVKSGKPVWGT 78 (248)
T ss_pred cEEEEEeC-CCchHHHHHHHHHCCCcEEEeCCHHHhccCCEEEeCCCHH--HHHHHHHhhcchHHHHHHHHHcCCCEEEE
Confidence 46999999 5899999999999999999999999999999999999653 34445543 37889999999999999999
Q ss_pred echHHHHhhhcccC--CCcCCCcccCceeee---------ecCCCCCCcceeeeEEEE-------EccCCcccccCCCeE
Q 045794 127 CLGLQLLFQSSEEN--GPVNGLGLIPGVVGR---------FDSSNGFRVPQIGWNALQ-------ITKDSEILDDVGDHH 188 (578)
Q Consensus 127 ClG~QlLa~a~~e~--~~~~Glgl~~~~v~~---------~~~~~~~~~~~~G~~~i~-------~~~~~~l~~~l~~~~ 188 (578)
|+|||+|+..+.+. +....+|.++..+.+ |.. ..+.|++||+++. +.....+.. ....
T Consensus 79 C~GmqlLa~~~~~~~~~~~~~lg~Ldi~v~RN~~g~qv~sfe~--~l~ip~~gwn~~~~~~~~~vFirap~i~~--~~~~ 154 (248)
T PLN02832 79 CAGLIFLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINSFET--ELPVPELAASEGGPETFRAVFIRAPAILS--VGPG 154 (248)
T ss_pred ChhHHHHHHHhcccccCCcceeCCccceEEecccCceeEeEEc--CCcCCccccccccccccceEEecCCceEe--CCCc
Confidence 99999999987542 222335555555444 543 3678999997653 111222211 1346
Q ss_pred EEEEeeeeeecCCCCCCcEEEEeecCC-ceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccCC
Q 045794 189 VYFVHSYRAMPSDDNKEWVSSTCNYGD-NFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 189 ~~~~H~~~v~~~~~~~~~~~~~~~~~d-~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~ 254 (578)
++..|+|.+...+. ....++..++. +++.+++++|++|+|||||++++. +++++|++++...
T Consensus 155 v~~l~sy~~~~~~~--~~~~a~~~y~~~~~~~aV~qgnvlatqFHPEls~d~--rih~~Fl~~~~~~ 217 (248)
T PLN02832 155 VEVLAEYPLPSEKA--LYSSSTDAEGRDKVIVAVKQGNLLATAFHPELTADT--RWHSYFVKMVSES 217 (248)
T ss_pred EEEEEEeccccccc--ccccccccccCCceEEEEEeCCEEEEEccCccCCcc--HHHHHHHHHHHHh
Confidence 78899997654322 22344555554 788899999999999999998755 9999999998753
|
|
| >PRK00758 GMP synthase subunit A; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=205.94 Aligned_cols=173 Identities=25% Similarity=0.386 Sum_probs=130.7
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCc---cCCCCC-CEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP---EDILNA-NRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLG 125 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~---~dl~~~-DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlG 125 (578)
|+|+|+++++.+++.++|+++|+++.+++.. +++.++ ||||||||++ ..+.. .+.++++ +.++||||
T Consensus 2 i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~l~~~~dgivi~Gg~~----~~~~~--~~~~~l~---~~~~PilG 72 (184)
T PRK00758 2 IVVVDNGGQYNHLIHRTLRYLGVDAKIIPNTTPVEEIKAFEDGLILSGGPD----IERAG--NCPEYLK---ELDVPILG 72 (184)
T ss_pred EEEEECCCchHHHHHHHHHHcCCcEEEEECCCCHHHHhhcCCEEEECCCCC----hhhcc--ccHHHHH---hCCCCEEE
Confidence 8999999999999999999999998887743 456778 9999999873 22221 2233443 46899999
Q ss_pred EechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCC
Q 045794 126 ICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNK 204 (578)
Q Consensus 126 IClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~ 204 (578)
||+|||+|+.+ .| +++.+ ...+++|+..+.++..++++.+++ .+.++.+|++.+...+..
T Consensus 73 IC~G~Q~L~~a-------~G-----g~v~~------~~~~~~g~~~i~~~~~~~l~~~~~~~~~~~~~H~~~v~~l~~~- 133 (184)
T PRK00758 73 ICLGHQLIAKA-------FG-----GEVGR------GEYGEYALVEVEILDEDDILKGLPPEIRVWASHADEVKELPDG- 133 (184)
T ss_pred EeHHHHHHHHh-------cC-----cEEec------CCCceeeeEEEEEcCCChhhhCCCCCcEEEeehhhhhhhCCCC-
Confidence 99999999994 22 56655 233578999998888888888777 688999999987654432
Q ss_pred CcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc-chHHHHHHHhhhcc
Q 045794 205 EWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD-VGLSVLRRFLHPKT 252 (578)
Q Consensus 205 ~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~-~~~~l~~~Fl~~~~ 252 (578)
+.......++.+++++. .++||+|||||++.. ++..||++|++.+.
T Consensus 134 --~~~la~~~~~~v~a~~~~~~~~~g~QfHPE~~~~~~g~~l~~~f~~~~~ 182 (184)
T PRK00758 134 --FEILARSDICEVEAMKHKEKPIYGVQFHPEVAHTEYGEEIFKNFLEICG 182 (184)
T ss_pred --CEEEEECCCCCEEEEEECCCCEEEEEcCCccCCCchHHHHHHHHHHHHc
Confidence 22233334467899985 469999999999754 78999999997654
|
|
| >PRK13525 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-23 Score=199.32 Aligned_cols=186 Identities=28% Similarity=0.385 Sum_probs=139.3
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
|+|.|+++ .|+..+..++|+..|+++..++.++++.++||||||||.....+ .......+.+.++++.+.++|++|||
T Consensus 2 m~~~i~~~-~g~~~~~~~~l~~~g~~~~~~~~~~~l~~~dgiii~GG~~~~~~-~~~~~~~~~~~i~~~~~~g~PilGIC 79 (189)
T PRK13525 2 MKIGVLAL-QGAVREHLAALEALGAEAVEVRRPEDLDEIDGLILPGGESTTMG-KLLRDFGLLEPLREFIASGLPVFGTC 79 (189)
T ss_pred CEEEEEEc-ccCHHHHHHHHHHCCCEEEEeCChhHhccCCEEEECCCChHHHH-HHHHhccHHHHHHHHHHCCCeEEEEC
Confidence 57999998 48888888999999999999998888999999999998643221 11123356788999999999999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCc
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEW 206 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~ 206 (578)
+|+|+|+.++.+. ...|+|++++++.+.. ..+..|.... +.++.+++ .+.++++|++.+...|....
T Consensus 80 ~G~QlL~~~~gg~-~~~~lg~~~~~v~~~~-----~g~~~g~~~~-----~~~~~~~~~~~~~~~~H~d~v~~lp~~~~- 147 (189)
T PRK13525 80 AGMILLAKEIEGY-EQEHLGLLDITVRRNA-----FGRQVDSFEA-----ELDIKGLGEPFPAVFIRAPYIEEVGPGVE- 147 (189)
T ss_pred HHHHHHHhhcccC-CCCceeeEEEEEEEcc-----CCCceeeEEe-----cccccCCCCCeEEEEEeCceeeccCCCcE-
Confidence 9999999976443 5678999999987622 1233443322 23444444 67899999998876665332
Q ss_pred EEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 207 VSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 207 ~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
++++. +..+++++.+++||+|||||++.. .+||++|++.+.
T Consensus 148 vlA~~---~~~~~~~~~~~~~g~QfHPE~~~~--~~~~~~f~~~~~ 188 (189)
T PRK13525 148 VLATV---GGRIVAVRQGNILATSFHPELTDD--TRVHRYFLEMVK 188 (189)
T ss_pred EEEEc---CCEEEEEEeCCEEEEEeCCccCCC--chHHHHHHHHhh
Confidence 33332 245678888899999999999764 589999998874
|
|
| >PRK06774 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=200.05 Aligned_cols=176 Identities=22% Similarity=0.245 Sum_probs=125.8
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc----CC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE----DI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~----dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
|+|+|+.+++.+|+.++|+++|+++.++++.+ ++ .++|+|||+||+....+. ......++. .+.++||
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~-----~~~~~~i~~-~~~~~Pi 75 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEA-----GISLAVIRH-FADKLPI 75 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhC-----CCchHHHHH-hcCCCCE
Confidence 88999999999999999999999999988652 23 258999998885322221 112344443 4678999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCC
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~ 202 (578)
||||+|||+|+.+ .| +++.+. .....|+..+.....++++++++ ...++++|++.+.....
T Consensus 76 LGIC~G~Qlla~~-------~G-----G~v~~~------~~~~~G~~~~~~~~~~~lf~~l~~~~~v~~~Hs~~v~~~~l 137 (191)
T PRK06774 76 LGVCLGHQALGQA-------FG-----ARVVRA------RQVMHGKTSAICHSGQGVFRGLNQPLTVTRYHSLVIAADSL 137 (191)
T ss_pred EEECHHHHHHHHH-------hC-----CEEEeC------CcceecceEEEEecCchhhcCCCCCcEEEEeCcceeeccCC
Confidence 9999999999994 23 676551 22456887777766777888877 68999999998853221
Q ss_pred CCC-cEEEEeecCC--ceEEEEEeC--CEEEEeeCCcc-cCcchHHHHHHHhh
Q 045794 203 NKE-WVSSTCNYGD--NFIASVRRG--NVHAVQFHPEK-SGDVGLSVLRRFLH 249 (578)
Q Consensus 203 ~~~-~~~~~~~~~d--~~iegi~~~--~i~gvQFHPE~-~~~~~~~l~~~Fl~ 249 (578)
+.. .+.+++..+. +.+++++++ |+||+|||||+ ...++..||++|++
T Consensus 138 p~~~~vlA~s~~d~~~~~i~~~~~~~~~i~GvQfHPE~~~~~~G~~i~~nf~~ 190 (191)
T PRK06774 138 PGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQFHPESILSEQGHQLLDNFLK 190 (191)
T ss_pred CCCeEEEEEeCCCCCcceEEEEEeCCCCEEEEEECCCcCCCccHHHHHHHHhh
Confidence 122 2333333221 345677755 99999999999 44588999999986
|
|
| >PRK08007 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-23 Score=198.76 Aligned_cols=174 Identities=22% Similarity=0.271 Sum_probs=123.7
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc----CC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE----DI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~----dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
|+++|+.+++.+++.++|+++|+++.++++.+ ++ .++|+|||+||+....+.. ...+.++. .+.++|+
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~-----~~~~~~~~-~~~~~Pi 75 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAG-----ISLDVIRH-YAGRLPI 75 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCC-----ccHHHHHH-hcCCCCE
Confidence 88999999999999999999999999887653 22 3689999988753222211 12344444 4678999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceee-eEEEEEccCCcccccCC-CeEEEEEeeeeeecCC
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG-WNALQITKDSEILDDVG-DHHVYFVHSYRAMPSD 201 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G-~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~ 201 (578)
||||+|||+||.+ .| +++.+. ..++.| ..++..+ .++++.+++ .+.++++|++.+....
T Consensus 76 LGIClG~Q~la~a-------~G-----g~v~~~------~~~~~g~~~~v~~~-~~~l~~~~~~~~~v~~~H~~~v~~~~ 136 (187)
T PRK08007 76 LGVCLGHQAMAQA-------FG-----GKVVRA------AKVMHGKTSPITHN-GEGVFRGLANPLTVTRYHSLVVEPDS 136 (187)
T ss_pred EEECHHHHHHHHH-------cC-----CEEEeC------CCcccCCceEEEEC-CCCcccCCCCCcEEEEcchhEEccCC
Confidence 9999999999995 24 666552 122334 3445433 445777776 5889999999885333
Q ss_pred CCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcc-cCcchHHHHHHHhh
Q 045794 202 DNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEK-SGDVGLSVLRRFLH 249 (578)
Q Consensus 202 ~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~-~~~~~~~l~~~Fl~ 249 (578)
.+.. +.......++.++++++ .++||+|||||. ....+..+|++|++
T Consensus 137 lp~~-~~v~a~~~~~~i~a~~~~~~~i~GvQfHPE~~~t~~G~~il~nFl~ 186 (187)
T PRK08007 137 LPAC-FEVTAWSETREIMGIRHRQWDLEGVQFHPESILSEQGHQLLANFLH 186 (187)
T ss_pred CCCC-eEEEEEeCCCcEEEEEeCCCCEEEEEeCCcccCCcchHHHHHHHhh
Confidence 2222 33444445678999984 589999999998 44588999999986
|
|
| >PRK05670 anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-23 Score=198.99 Aligned_cols=177 Identities=24% Similarity=0.269 Sum_probs=123.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc----CC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE----DI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~----dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
|.|+|+++++.+++.++|+++|+++.+++... ++ .++||||++||+-...+.. ...+++++ +..++|+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~-----~~~~~l~~-~~~~~Pv 75 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAG-----ISLELIRE-FAGKVPI 75 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcc-----hHHHHHHH-hcCCCCE
Confidence 89999999999999999999999999887642 12 2489999987752222211 12345544 4578999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeE-EEEEccCCcccccCC-CeEEEEEeeeeeecCC
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWN-ALQITKDSEILDDVG-DHHVYFVHSYRAMPSD 201 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~-~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~ 201 (578)
||||+|||+|+.+ .| +++.+. ..++.|+. .+. ...++++.+++ ...++++|++.+....
T Consensus 76 LGIClG~Qlla~a-------lG-----g~v~~~------~~~~~g~~~~v~-~~~~~l~~~~~~~~~v~~~H~~~v~~~~ 136 (189)
T PRK05670 76 LGVCLGHQAIGEA-------FG-----GKVVRA------KEIMHGKTSPIE-HDGSGIFAGLPNPFTVTRYHSLVVDRES 136 (189)
T ss_pred EEECHHHHHHHHH-------hC-----CEEEec------CCcccCceeEEE-eCCCchhccCCCCcEEEcchhheecccc
Confidence 9999999999995 23 555541 11234443 333 45667777776 6789999999985311
Q ss_pred CCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCccc-CcchHHHHHHHhhhcc
Q 045794 202 DNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKS-GDVGLSVLRRFLHPKT 252 (578)
Q Consensus 202 ~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~-~~~~~~l~~~Fl~~~~ 252 (578)
.+.. +.......++.+++++. .++||+|||||.. +.++..||++|++.++
T Consensus 137 lp~~-~~~la~s~~~~i~a~~~~~~~~~gvQfHPE~~~~~~g~~i~~~F~~~~~ 189 (189)
T PRK05670 137 LPDC-LEVTAWTDDGEIMGVRHKELPIYGVQFHPESILTEHGHKLLENFLELAR 189 (189)
T ss_pred CCCc-eEEEEEeCCCcEEEEEECCCCEEEEeeCCCcCCCcchHHHHHHHHHhhC
Confidence 1122 22222234568999985 4899999999996 3478999999998754
|
|
| >PRK00074 guaA GMP synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-23 Score=225.71 Aligned_cols=261 Identities=21% Similarity=0.259 Sum_probs=169.3
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCc---cCCCC--CCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP---EDILN--ANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~---~dl~~--~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
.+|+|+|||+++...+.++++++|+..++++.. +++.+ +||||||||+....+... ....+...+.++|
T Consensus 4 ~~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~~~~~~l~~~~~dgIIlsGGp~sv~~~~~------p~~~~~i~~~~~P 77 (511)
T PRK00074 4 DKILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEEGA------PRADPEIFELGVP 77 (511)
T ss_pred CEEEEEECCCCcHHHHHHHHHHCCCeEEEEECCCCHHHHhccCCCEEEECCCCcccccCCC------ccccHHHHhCCCC
Confidence 459999999999999999999999988877543 34544 499999998653322111 1122344567999
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCC
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSD 201 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~ 201 (578)
|||||+|||+|+.++ | +++.+ ...+++|+..+.++.++++|++++ ...++.+|++.+...+
T Consensus 78 vLGIC~G~QlLa~~l-------G-----G~V~~------~~~~e~G~~~i~i~~~~~Lf~~l~~~~~v~~~H~d~V~~lp 139 (511)
T PRK00074 78 VLGICYGMQLMAHQL-------G-----GKVER------AGKREYGRAELEVDNDSPLFKGLPEEQDVWMSHGDKVTELP 139 (511)
T ss_pred EEEECHHHHHHHHHh-------C-----CeEEe------cCCcccceEEEEEcCCChhhhcCCCceEEEEECCeEEEecC
Confidence 999999999999952 2 56655 223678999999888888998887 6789999999987655
Q ss_pred CCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc-chHHHHHHHh-hhccCCCCCCCcccccccceeEEEeeeEe
Q 045794 202 DNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD-VGLSVLRRFL-HPKTNIPKKPTEGKALKLAKRVIACLDVR 277 (578)
Q Consensus 202 ~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~-~~~~l~~~Fl-~~~~~~~~~~~~~~~~~~~~riIp~iDl~ 277 (578)
.. ..+.+. ..+..++++++ +++||+|||||++.. .+..||++|+ +.+.+.+.+.+..-....-.+|-- .++
T Consensus 140 ~g-~~vlA~--s~~~~v~ai~~~~~~i~GvQFHPE~~~t~~G~~il~nFl~~i~~~~~~~~~~~~~~~~~~~l~~--~v~ 214 (511)
T PRK00074 140 EG-FKVIAS--TENCPIAAIANEERKFYGVQFHPEVTHTPQGKKLLENFVFDICGCKGDWTMENFIEEAIEEIRE--QVG 214 (511)
T ss_pred CC-cEEEEE--eCCCCEEEEEeCCCCEEEEeCCCCcCCchhHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHH--hcC
Confidence 42 222333 23466889874 689999999999754 7899999999 566666666544222111111111 123
Q ss_pred ecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcccc
Q 045794 278 ANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVP 356 (578)
Q Consensus 278 ~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~p 356 (578)
+++++ ++.|.. ++.+-++-.....| .+++.+=+|.- ........++.+.+++..++|
T Consensus 215 ---~~~vlva~SGGv---------------DS~vll~ll~~~lg-~~v~av~vd~g---~~~~~e~~~~~~~~a~~lgi~ 272 (511)
T PRK00074 215 ---DKKVILGLSGGV---------------DSSVAAVLLHKAIG-DQLTCVFVDHG---LLRKNEAEQVMEMFREHFGLN 272 (511)
T ss_pred ---CCcEEEEeCCCc---------------cHHHHHHHHHHHhC-CceEEEEEeCC---CCCHHHHHHHHHHHHHHcCCc
Confidence 35555 667654 23333333223347 45776666531 111112233334466778888
Q ss_pred EEE
Q 045794 357 LTV 359 (578)
Q Consensus 357 i~~ 359 (578)
+.+
T Consensus 273 ~~v 275 (511)
T PRK00074 273 LIH 275 (511)
T ss_pred EEE
Confidence 764
|
|
| >CHL00101 trpG anthranilate synthase component 2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=199.62 Aligned_cols=176 Identities=20% Similarity=0.270 Sum_probs=124.9
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc----CC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE----DI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~----dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
|.|+|+++++.+++.++|+++|+++.+++... ++ ..+|||||+||+....+. .....+.++.+.++|+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~------~~~~~i~~~~~~~~Pi 75 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDS------GISLDVISSYAPYIPI 75 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHC------cchHHHHHHhcCCCcE
Confidence 89999999999999999999999998887542 23 469999998885332221 2223344556789999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCC
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~ 202 (578)
||||+|||+|+.+ .| +++.+. ..+..|+........++++.+++ .+.++++|++.+.....
T Consensus 76 LGIClG~Qlla~~-------~G-----g~V~~~------~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~~H~~~v~~~~l 137 (190)
T CHL00101 76 LGVCLGHQSIGYL-------FG-----GKIIKA------PKPMHGKTSKIYHNHDDLFQGLPNPFTATRYHSLIIDPLNL 137 (190)
T ss_pred EEEchhHHHHHHH-------hC-----CEEEEC------CCcccCceeeEeeCCcHhhccCCCceEEEcchhheeecccC
Confidence 9999999999994 23 676652 12234444333445567887777 67899999999853221
Q ss_pred CCCcEEEEeecCCceEEEEEe--CC-EEEEeeCCccc-CcchHHHHHHHhhh
Q 045794 203 NKEWVSSTCNYGDNFIASVRR--GN-VHAVQFHPEKS-GDVGLSVLRRFLHP 250 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~~--~~-i~gvQFHPE~~-~~~~~~l~~~Fl~~ 250 (578)
+.. +.......++.++++++ .+ +||+|||||.. ...+..|+++|++.
T Consensus 138 p~~-~~vla~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~~l~~nf~~~ 188 (190)
T CHL00101 138 PSP-LEITAWTEDGLIMACRHKKYKMLRGIQFHPESLLTTHGQQILRNFLSL 188 (190)
T ss_pred CCc-eEEEEEcCCCcEEEEEeCCCCCEEEEEeCCccCCChhHHHHHHHHHhh
Confidence 122 22333345677899984 36 99999999996 34788999999874
|
|
| >PLN02335 anthranilate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-23 Score=201.98 Aligned_cols=189 Identities=16% Similarity=0.232 Sum_probs=130.4
Q ss_pred CCCCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc-C---C--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHH
Q 045794 44 TSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE-D---I--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYI 117 (578)
Q Consensus 44 ~~~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~-d---l--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~ 117 (578)
....++|+|+|+++++.+++.++|+++|+++.+++... + + .++|+|||+||+....+... ..+.++ ..
T Consensus 15 ~~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~-----~~~~~~-~~ 88 (222)
T PLN02335 15 SKQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGI-----SLQTVL-EL 88 (222)
T ss_pred cCccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccc-----hHHHHH-Hh
Confidence 34556799999999999999999999999999887642 1 2 35899999887532322111 122333 24
Q ss_pred hCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEcc--CCcccccCC-CeEEEEEee
Q 045794 118 EKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK--DSEILDDVG-DHHVYFVHS 194 (578)
Q Consensus 118 ~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~--~~~l~~~l~-~~~~~~~H~ 194 (578)
..++|+||||+|||+|+.+ .| +++.+.. ....+.++.++..+. .+++|.+++ .+.++++|+
T Consensus 89 ~~~~PiLGIClG~QlLa~a-------lG-----g~v~~~~----~~~~~G~~~~v~~~~~~~~~Lf~~l~~~~~v~~~H~ 152 (222)
T PLN02335 89 GPLVPLFGVCMGLQCIGEA-------FG-----GKIVRSP----FGVMHGKSSPVHYDEKGEEGLFSGLPNPFTAGRYHS 152 (222)
T ss_pred CCCCCEEEecHHHHHHHHH-------hC-----CEEEeCC----CccccCceeeeEECCCCCChhhhCCCCCCEEEechh
Confidence 5679999999999999995 23 4554411 111233455565543 347888887 688999999
Q ss_pred eeeecCCCCCCcEEEEeecCCceEEEEEeC--C-EEEEeeCCcccC-cchHHHHHHHhhhccCC
Q 045794 195 YRAMPSDDNKEWVSSTCNYGDNFIASVRRG--N-VHAVQFHPEKSG-DVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 195 ~~v~~~~~~~~~~~~~~~~~d~~iegi~~~--~-i~gvQFHPE~~~-~~~~~l~~~Fl~~~~~~ 254 (578)
+.+.........+.......++.++++++. + +||+|||||... .++..||++|++.+...
T Consensus 153 ~~v~~~~lp~~~~~v~a~~~~~~v~ai~~~~~~~i~GvQfHPE~~~~~~g~~i~~nF~~~~~~~ 216 (222)
T PLN02335 153 LVIEKDTFPSDELEVTAWTEDGLIMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIIEKK 216 (222)
T ss_pred heEecccCCCCceEEEEEcCCCCEEEEEecCCCCEEEEEeCCCCCCChhHHHHHHHHHHHHHhh
Confidence 988643222221333444456789999954 4 999999999863 47899999999887654
|
|
| >cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=195.15 Aligned_cols=174 Identities=23% Similarity=0.329 Sum_probs=124.6
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc------CCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE------DILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~------dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
|.|+|+++.+.+++.++|+++|+++.+++... ++.++||||++||+....+.. ....+++++..++|+
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~------~~~~i~~~~~~~~Pv 74 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAG------ISLEIIRALAGKVPI 74 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccch------hHHHHHHHHhcCCCE
Confidence 57899999999999999999999999887652 257899999977643221111 234455556778999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCC
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~ 202 (578)
||||+|||+|+.+ .| +++.+.. ...+.+++.+..+ .++++..++ .+.++++|++++...+.
T Consensus 75 lGIC~G~Qlla~~-------~G-----g~v~~~~-----~~~~g~~~~v~~~-~~~~~~~~~~~~~~~~~H~~~v~~~~~ 136 (184)
T cd01743 75 LGVCLGHQAIAEA-------FG-----GKVVRAP-----EPMHGKTSEIHHD-GSGLFKGLPQPFTVGRYHSLVVDPDPL 136 (184)
T ss_pred EEECHhHHHHHHH-------hC-----CEEEeCC-----CCCcCceeEEEEC-CCccccCCCCCcEEEeCcEEEEecCCC
Confidence 9999999999995 23 5665421 1122334555554 456777776 68899999999876554
Q ss_pred CCCcEEEEeecCCceEEEEEeC--CEEEEeeCCccc-CcchHHHHHHHh
Q 045794 203 NKEWVSSTCNYGDNFIASVRRG--NVHAVQFHPEKS-GDVGLSVLRRFL 248 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~~~--~i~gvQFHPE~~-~~~~~~l~~~Fl 248 (578)
.. .........+..+++++.+ ++||+|||||+. ...+..||++|+
T Consensus 137 ~~-~~~~la~~~~~~v~a~~~~~~~i~gvQfHPE~~~~~~g~~l~~~f~ 184 (184)
T cd01743 137 PD-LLEVTASTEDGVIMALRHRDLPIYGVQFHPESILTEYGLRLLENFL 184 (184)
T ss_pred Cc-eEEEEEeCCCCeEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHhhC
Confidence 32 1233344456789999954 699999999984 357899999995
|
Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese |
| >PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=197.28 Aligned_cols=178 Identities=20% Similarity=0.207 Sum_probs=124.2
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC------CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED------ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d------l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
|+|+|+.+++.+++.++|+++|+++.+++..+. ..++|+|||+||+....+. ......++. .+.++|+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~-----~~~~~~i~~-~~~~~Pv 75 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEA-----GISMEVIRY-FAGKIPI 75 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhC-----CCchHHHHH-hcCCCCE
Confidence 899999999999999999999999998876531 2468999998885332221 112344443 3578999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCC
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~ 202 (578)
||||+|||+|+.+ .| +++.+. ..++.|+.........++|.+++ .+.++++|++.+.....
T Consensus 76 LGIClG~Qlla~~-------lG-----g~V~~~------~~~~~G~~~~i~~~~~~lf~~~~~~~~v~~~H~~~v~~~~l 137 (195)
T PRK07649 76 FGVCLGHQSIAQV-------FG-----GEVVRA------ERLMHGKTSLMHHDGKTIFSDIPNPFTATRYHSLIVKKETL 137 (195)
T ss_pred EEEcHHHHHHHHH-------cC-----CEEeeC------CCcccCCeEEEEECCChhhcCCCCCCEEEEechheEecccC
Confidence 9999999999995 23 666552 12334443322234567888887 68999999998743221
Q ss_pred CCCcEEEEeecCCceEEEEEeC--CEEEEeeCCcccC-cchHHHHHHHhhhcc
Q 045794 203 NKEWVSSTCNYGDNFIASVRRG--NVHAVQFHPEKSG-DVGLSVLRRFLHPKT 252 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~~~--~i~gvQFHPE~~~-~~~~~l~~~Fl~~~~ 252 (578)
+.. +.......++.+++++++ ++||+|||||... ..+..++++|++...
T Consensus 138 p~~-~~~~a~s~~~~v~a~~~~~~~i~gvQFHPE~~~t~~g~~il~nfl~~~~ 189 (195)
T PRK07649 138 PDC-LEVTSWTEEGEIMAIRHKTLPIEGVQFHPESIMTSHGKELLQNFIRKYS 189 (195)
T ss_pred CCC-eEEEEEcCCCcEEEEEECCCCEEEEEECCCCCCCccHHHHHHHHHHHhH
Confidence 122 233333445678999854 6999999999753 478899999998664
|
|
| >PRK05637 anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-22 Score=194.94 Aligned_cols=179 Identities=22% Similarity=0.313 Sum_probs=119.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc---CC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE---DI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 49 ~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~---dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
+|+++|+++++++++.++|+++|+.++++++.. ++ .++|+|||+||+....+... ..+.++.+. .++||
T Consensus 3 ~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~~~l~~~~~~~iIlsgGPg~~~d~~~-----~~~li~~~~-~~~Pi 76 (208)
T PRK05637 3 HVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPRDAGN-----MMALIDRTL-GQIPL 76 (208)
T ss_pred EEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCHHHHHhcCCCEEEEeCCCCCHHHhhH-----HHHHHHHHh-CCCCE
Confidence 599999999999999999999999999988743 33 36899999776433322211 124454433 57999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceee-eEEEEEcc---CCcccccCC-------------C
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG-WNALQITK---DSEILDDVG-------------D 186 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G-~~~i~~~~---~~~l~~~l~-------------~ 186 (578)
||||+|||+|+.++ | +++.+. . +..| +..+.++. .++++.+++ .
T Consensus 77 LGIClG~Qlla~al-------G-----G~V~~~------~-~~~G~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~ 137 (208)
T PRK05637 77 LGICLGFQALLEHH-------G-----GKVEPC------G-PVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRK 137 (208)
T ss_pred EEEcHHHHHHHHHc-------C-----CeeccC------C-cccceEEEeEECCCCCCCcccCCCCcccccccccccCCc
Confidence 99999999999952 3 444321 1 1222 22333332 334555442 3
Q ss_pred eEEEEEeeeeeecCCCCCCcEEEEeecCC-ceEEEEE--eCCEEEEeeCCcccCc-chHHHHHHHhhhccC
Q 045794 187 HHVYFVHSYRAMPSDDNKEWVSSTCNYGD-NFIASVR--RGNVHAVQFHPEKSGD-VGLSVLRRFLHPKTN 253 (578)
Q Consensus 187 ~~~~~~H~~~v~~~~~~~~~~~~~~~~~d-~~iegi~--~~~i~gvQFHPE~~~~-~~~~l~~~Fl~~~~~ 253 (578)
+.++.+|++.+...+.. ..+.+++..++ +++++++ .+++||+|||||...+ .+..||+||+...-+
T Consensus 138 ~~V~~~H~~~v~~lp~~-~~vlA~s~~~~~~v~~a~~~~~~~~~GvQfHPE~~~T~~G~~il~nfl~~~~~ 207 (208)
T PRK05637 138 VPIARYHSLGCVVAPDG-MESLGTCSSEIGPVIMAAETTDGKAIGLQFHPESVLSPTGPIILSRCVEQLLA 207 (208)
T ss_pred eEEEEechhhhhcCCCC-eEEEEEecCCCCCEEEEEEECCCCEEEEEeCCccCcCCCHHHHHHHHHHHHhc
Confidence 67889999887665542 22333332222 4667766 5699999999999654 899999999987543
|
|
| >PRK07765 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-22 Score=194.76 Aligned_cols=185 Identities=20% Similarity=0.248 Sum_probs=130.8
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC--------CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhC
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED--------ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEK 119 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d--------l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~ 119 (578)
++|.|+|.++....++.++|+++|+++.+++...+ +.++|||||+||+....+. ....++++++.+.
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~-----~~~~~~i~~~~~~ 75 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERA-----GASIDMVRACAAA 75 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhc-----chHHHHHHHHHhC
Confidence 46899999888999999999999999888765421 3579999999885322211 1235788888888
Q ss_pred CCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeee-EEEEEccCCcccccCC-CeEEEEEeeeee
Q 045794 120 DRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW-NALQITKDSEILDDVG-DHHVYFVHSYRA 197 (578)
Q Consensus 120 g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~-~~i~~~~~~~l~~~l~-~~~~~~~H~~~v 197 (578)
++||||||+|||+|+.+ .| +++.+. ..+..|. +.+.++. ..++.+++ .+.++++|++.+
T Consensus 76 ~~PiLGIC~G~Qlla~a-------~G-----G~v~~~------~~~~~g~~~~v~~~~-~~~~~~~~~~~~v~~~H~~~v 136 (214)
T PRK07765 76 GTPLLGVCLGHQAIGVA-------FG-----ATVDRA------PELLHGKTSSVHHTG-VGVLAGLPDPFTATRYHSLTI 136 (214)
T ss_pred CCCEEEEccCHHHHHHH-------hC-----CEEeeC------CCCccCceeEEEECC-CccccCCCCccEEEecchheE
Confidence 99999999999999995 23 566541 1223344 3344443 34566655 578999999988
Q ss_pred ecCCCCCCcEEEEeecCCceEEEEEeC--CEEEEeeCCccc-CcchHHHHHHHhhhccCCCCC
Q 045794 198 MPSDDNKEWVSSTCNYGDNFIASVRRG--NVHAVQFHPEKS-GDVGLSVLRRFLHPKTNIPKK 257 (578)
Q Consensus 198 ~~~~~~~~~~~~~~~~~d~~iegi~~~--~i~gvQFHPE~~-~~~~~~l~~~Fl~~~~~~~~~ 257 (578)
.+...+.. +.......++.+++++.+ ++||+|||||.. ...+..++++|+..+.+.+.+
T Consensus 137 ~~~~lp~~-~~vla~s~~~~vqa~~~~~~~i~gvQfHPE~~~t~~g~~~l~~f~~~~~~~~~~ 198 (214)
T PRK07765 137 LPETLPAE-LEVTARTDSGVIMAVRHRELPIHGVQFHPESVLTEGGHRMLANWLTVCGWAPDE 198 (214)
T ss_pred ecccCCCc-eEEEEEcCCCcEEEEEeCCCCEEEEeeCCCcccCcchHHHHHHHHHHhccccch
Confidence 63222222 233333456778999954 799999999975 446889999999988766554
|
|
| >TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-22 Score=190.49 Aligned_cols=174 Identities=22% Similarity=0.211 Sum_probs=122.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCc----cCCC--CCCEEEECCCC-CchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP----EDIL--NANRLIFPGVG-AFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~----~dl~--~~DGlILpGGg-~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
|.|+|+.+++.+++.++|+++|+++.+++.. +++. ++|||||+||+ ++.... ...+.++++ ..++|
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~~------~~~~~i~~~-~~~~P 74 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAG------ISLEAIRHF-AGKLP 74 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhcc------hhHHHHHHh-ccCCC
Confidence 8899999999999999999999999887743 2232 48999998875 432211 124566666 67899
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCC
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSD 201 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~ 201 (578)
|||||+|||+|+.+ .| +++.+. .+..+.++..+..+. +.++.+++ .+.++++|++.+....
T Consensus 75 vLGIC~G~Qll~~~-------~G-----G~v~~~-----~~~~~g~~~~v~~~~-~~~~~~l~~~~~v~~~H~~~v~~~~ 136 (188)
T TIGR00566 75 ILGVCLGHQAMGQA-------FG-----GDVVRA-----NTVMHGKTSEIEHNG-AGIFRGLFNPLTATRYHSLVVEPET 136 (188)
T ss_pred EEEECHHHHHHHHH-------cC-----CEEeeC-----CCccccceEEEEECC-CccccCCCCCcEEEEcccceEeccc
Confidence 99999999999994 23 666552 122344467776544 44566655 5788999999885322
Q ss_pred CCCCcEEEEeecCC-ceEEEEEeC--CEEEEeeCCccc-CcchHHHHHHHhh
Q 045794 202 DNKEWVSSTCNYGD-NFIASVRRG--NVHAVQFHPEKS-GDVGLSVLRRFLH 249 (578)
Q Consensus 202 ~~~~~~~~~~~~~d-~~iegi~~~--~i~gvQFHPE~~-~~~~~~l~~~Fl~ 249 (578)
.+.. +.......+ +.+++++++ ++||+|||||.. ...+..||++|+.
T Consensus 137 l~~~-~~v~a~s~~~~~v~a~~~~~~~i~gvQfHPE~~~t~~G~~il~nfl~ 187 (188)
T TIGR00566 137 LPTC-FPVTAWEEENIEIMAIRHRDLPLEGVQFHPESILSEQGHQLLANFLH 187 (188)
T ss_pred CCCc-eEEEEEcCCCCEEEEEEeCCCCEEEEEeCCCccCCcccHHHHHHHHh
Confidence 2222 233332222 488999853 899999999984 4588999999986
|
This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase. |
| >TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-22 Score=225.01 Aligned_cols=186 Identities=22% Similarity=0.318 Sum_probs=140.4
Q ss_pred CCCCCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCc--cC---CCCCCEEEECCC-CCchHHHHHHHhhcHHHHHHHH
Q 045794 43 ATSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP--ED---ILNANRLIFPGV-GAFAAAMDVLNKTGMAEALCAY 116 (578)
Q Consensus 43 ~~~~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~--~d---l~~~DGlILpGG-g~~~~~~~~l~~~~l~~~i~~~ 116 (578)
.++..++|+|+|+++++.+++.++|+++|+++.+++.. ++ ..++|+|||+|| +++. + ..+.+.++++
T Consensus 512 ~~~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~~~~~~~~~~DgLILsgGPGsp~-d------~~~~~~I~~~ 584 (717)
T TIGR01815 512 RGGEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPA-D------FDVAGTIDAA 584 (717)
T ss_pred CCCCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCChhhhhhcCCCEEEEcCCCCCch-h------cccHHHHHHH
Confidence 44667889999999999999999999999999888654 22 256999999665 4432 1 1345678888
Q ss_pred HhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceee-eEEEEEccCCcccccCC-CeEEEEEee
Q 045794 117 IEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG-WNALQITKDSEILDDVG-DHHVYFVHS 194 (578)
Q Consensus 117 ~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G-~~~i~~~~~~~l~~~l~-~~~~~~~H~ 194 (578)
++.++|+||||+|||+|+.+ .| +++.+ .+.+++| ++++.++..+++|.+++ .+.++++|+
T Consensus 585 ~~~~iPvLGICLG~QlLa~a-------~G-----G~V~~------~~~p~~G~~~~V~~~~~~~Lf~~lp~~~~v~~~HS 646 (717)
T TIGR01815 585 LARGLPVFGVCLGLQGMVEA-------FG-----GALDV------LPEPVHGKASRIRVLGPDALFAGLPERLTVGRYHS 646 (717)
T ss_pred HHCCCCEEEECHHHHHHhhh-------hC-----CEEEE------CCCCeeCcceEEEECCCChhhhcCCCCCEEEEECC
Confidence 88999999999999999994 23 67665 2346777 56787777778898887 789999999
Q ss_pred eeeecCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCccc----CcchHHHHHHHhhhccCC
Q 045794 195 YRAMPSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKS----GDVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 195 ~~v~~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~----~~~~~~l~~~Fl~~~~~~ 254 (578)
+.+.....+.. +......+++.++++++ .++||+|||||.. ...+..|++||++.+...
T Consensus 647 ~~~~~~~LP~~-~~vlA~s~d~~v~Ai~~~~~~i~GVQFHPEsi~T~sg~~G~~ilkNfl~~~~~~ 711 (717)
T TIGR01815 647 LFARRDRLPAE-LTVTAESADGLIMAIEHRRLPLAAVQFHPESIMTLDGGAGLAMIGNVVDRLAAG 711 (717)
T ss_pred CCcccccCCCC-eEEEEEeCCCcEEEEEECCCCEEEEEeCCeeCCccCchhHHHHHHHHHHHHhhc
Confidence 87643222222 23333445678999995 5899999999983 336899999999988644
|
This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate. |
| >COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.3e-23 Score=197.17 Aligned_cols=179 Identities=26% Similarity=0.389 Sum_probs=135.0
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCC-CeEEEeCCccC-----CCCCCEEEECCCCCchHHHH-HHHhhcHHHHHHHHHhCC
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLG-FGIKDVQTPED-----ILNANRLIFPGVGAFAAAMD-VLNKTGMAEALCAYIEKD 120 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~G-v~v~~v~~~~d-----l~~~DGlILpGGg~~~~~~~-~l~~~~l~~~i~~~~~~g 120 (578)
.+|+|+|++..+...+.|++++.| +-.+++++..+ ..++||+||+||..+..+.. |.. ...+.|+++...+
T Consensus 2 ~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~--~~~~~i~~~~~p~ 79 (198)
T COG0518 2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLP--REKDLIKDAGVPG 79 (198)
T ss_pred cEEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCCCCcccccccCCCEEEEcCCCCCCccccccch--hHHHHHHHhCCCC
Confidence 359999999999999999999999 66666554422 24569999999974443322 333 4567788877778
Q ss_pred CCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEcc-CCcccccCC-Ce-EEEEEeeeee
Q 045794 121 RPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK-DSEILDDVG-DH-HVYFVHSYRA 197 (578)
Q Consensus 121 ~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~-~~~l~~~l~-~~-~~~~~H~~~v 197 (578)
+||||||+|||+||.+ +| ++|.+ ....++||.+++++. .++++++++ .. .++++|.+.+
T Consensus 80 ~pvLGIC~G~Ql~A~~---------lG---g~V~~------~~~~E~G~~~v~~~~~~~~l~~gl~~~~~~v~~sH~D~v 141 (198)
T COG0518 80 KPVLGICLGHQLLAKA---------LG---GKVER------GPKREIGWTPVELTEGDDPLFAGLPDLFTTVFMSHGDTV 141 (198)
T ss_pred CCEEEEChhHHHHHHH---------hC---CEEec------cCCCccceEEEEEecCccccccCCccccCccccchhCcc
Confidence 8899999999999995 23 78765 223789999999984 447888877 44 4999999998
Q ss_pred ecCCCCCCcEEEEeecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 198 MPSDDNKEWVSSTCNYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 198 ~~~~~~~~~~~~~~~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
...|.....+..+..+ -++++++ +++||+|||||++...+..++++|..
T Consensus 142 ~~lP~g~~vlA~s~~c---p~qa~~~~~~~~gvQFHpEv~~~~~~~~l~nf~~ 191 (198)
T COG0518 142 VELPEGAVVLASSETC---PNQAFRYGKRAYGVQFHPEVTHEYGEALLENFAH 191 (198)
T ss_pred ccCCCCCEEEecCCCC---hhhheecCCcEEEEeeeeEEeHHHHHHHHHHhhh
Confidence 8777644433333333 3577875 49999999999998888999999995
|
|
| >PRK12564 carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=205.33 Aligned_cols=188 Identities=19% Similarity=0.259 Sum_probs=124.1
Q ss_pred ecCCCcccccC--CCCCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc---CC--CCCCEEEECCCCCchHHHHHHH
Q 045794 33 FKSPRALSIRA--TSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE---DI--LNANRLIFPGVGAFAAAMDVLN 105 (578)
Q Consensus 33 ~~~~~~~~~~~--~~~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~---dl--~~~DGlILpGGg~~~~~~~~l~ 105 (578)
+++..++.... .+.+.+|+|+|+| .+++++++|+++|+++.++++.. ++ .++|||||+||+...... .
T Consensus 161 vs~~~~~~~~~~~~~~~~~I~viD~G--~k~nivr~L~~~G~~v~vvp~~~~~~~i~~~~~DGIvLSgGPgdp~~~---~ 235 (360)
T PRK12564 161 VSTKEPYPWPGPGGELKYKVVAIDFG--VKRNILRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPGDPAAL---D 235 (360)
T ss_pred eCCCCCEECCCCCCCCCCEEEEEeCC--cHHHHHHHHHHCCCEEEEEeCCCCHHHHHhcCCCEEEEeCCCCChHHH---H
Confidence 44444444421 2336789999976 89999999999999999988653 23 269999999885322211 1
Q ss_pred hhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeee-EEEEEccCCcccccC
Q 045794 106 KTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW-NALQITKDSEILDDV 184 (578)
Q Consensus 106 ~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~-~~i~~~~~~~l~~~l 184 (578)
...+.++++++.++|+||||+|||+|+.+ .| +++.+.. ..+.|. +++......
T Consensus 236 --~~~~~i~~~~~~~~PilGIClG~QlLa~a-------~G-----g~v~kl~------~gh~G~~~pv~~~~~~------ 289 (360)
T PRK12564 236 --YAIEMIRELLEKKIPIFGICLGHQLLALA-------LG-----AKTYKMK------FGHRGANHPVKDLETG------ 289 (360)
T ss_pred --HHHHHHHHHHHcCCeEEEECHHHHHHHHH-------hC-----CcEeccC------CCccCCceeeEECCCC------
Confidence 34567888888899999999999999995 24 3333311 112221 233222111
Q ss_pred CCeEEEEEeeeeeecCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc--chHHHHHHHhhhc
Q 045794 185 GDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD--VGLSVLRRFLHPK 251 (578)
Q Consensus 185 ~~~~~~~~H~~~v~~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~--~~~~l~~~Fl~~~ 251 (578)
......++|++.+.+...+..+.....+.+++.+|++++ .|+||+|||||..++ ++..+|++|++.+
T Consensus 290 ~~~its~~H~~~V~~~~lp~~l~v~a~~~~Dg~iegi~~~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~~ 360 (360)
T PRK12564 290 KVEITSQNHGFAVDEDSLPANLEVTHVNLNDGTVEGLRHKDLPAFSVQYHPEASPGPHDSAYLFDEFVELM 360 (360)
T ss_pred cEEEEecCcccEEcccccCCceEEEEEeCCCCcEEEEEECCCCEEEEEeCCcCCCCCCCHHHHHHHHHHhC
Confidence 123457789998863333233433333445788999995 489999999999653 6788999999764
|
|
| >PRK08857 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=189.59 Aligned_cols=176 Identities=23% Similarity=0.275 Sum_probs=120.9
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc-C-----CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE-D-----ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~-d-----l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
|+++|..+++.+++.++|+++|+++.+++..+ + -.++|+||++||+-...+.. ...++++. ++.++|+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~-----~~~~~i~~-~~~~~Pi 75 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAG-----ISLQAIEH-FAGKLPI 75 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCc-----chHHHHHH-hcCCCCE
Confidence 89999999999999999999999999887552 2 12589999988752222111 12345544 5688999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeE-EEEEccCCcccccCC-CeEEEEEeeeeeecCC
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWN-ALQITKDSEILDDVG-DHHVYFVHSYRAMPSD 201 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~-~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~ 201 (578)
||||+|||+|+.+ .| +++.+. ..++.|+. .+.. ..++++.+++ .+.++++|++.+....
T Consensus 76 LGIClG~Qlia~a-------~G-----g~v~~~------~~~~~G~~~~~~~-~~~~l~~~~~~~~~v~~~H~~~v~~~~ 136 (193)
T PRK08857 76 LGVCLGHQAIAQV-------FG-----GQVVRA------RQVMHGKTSPIRH-TGRSVFKGLNNPLTVTRYHSLVVKNDT 136 (193)
T ss_pred EEEcHHHHHHHHH-------hC-----CEEEeC------CCceeCceEEEEE-CCCcccccCCCccEEEEccEEEEEcCC
Confidence 9999999999995 23 566541 22345653 3333 3456777776 6889999999875322
Q ss_pred CCCC-cEEEEeecCC---ceEEEEEeC--CEEEEeeCCccc-CcchHHHHHHHhhh
Q 045794 202 DNKE-WVSSTCNYGD---NFIASVRRG--NVHAVQFHPEKS-GDVGLSVLRRFLHP 250 (578)
Q Consensus 202 ~~~~-~~~~~~~~~d---~~iegi~~~--~i~gvQFHPE~~-~~~~~~l~~~Fl~~ 250 (578)
.+.. .+.++....+ ..+++++++ |+||+|||||.. ...+..||++|++.
T Consensus 137 lp~~~~v~a~s~~~~~~~~~i~~~~~~~~pi~gvQfHPE~~~t~~g~~i~~nFl~~ 192 (193)
T PRK08857 137 LPECFELTAWTELEDGSMDEIMGFQHKTLPIEAVQFHPESIKTEQGHQLLANFLAR 192 (193)
T ss_pred CCCCeEEEEEecCcCCCcceEEEEEeCCCCEEEEeeCCCcCCCcchHHHHHHHHhh
Confidence 2222 2233332112 467888754 999999999986 34789999999874
|
|
| >PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group [] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-22 Score=191.74 Aligned_cols=174 Identities=26% Similarity=0.397 Sum_probs=126.0
Q ss_pred EEEECCCCCHHHHHHHHHHCCCeEEEeCCcc-------CCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 51 TLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE-------DILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 51 ~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~-------dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
+|+|+++++..++.++++++|+++++++... ++.++|||||+||.....+ +. .+.+.++++.+.++|+
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d---~~--~~~~~i~~~~~~~~Pi 75 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD---IE--GLIELIREARERKIPI 75 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS---HH--HHHHHHHHHHHTTSEE
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc---cc--ccccccccccccceEE
Confidence 5899999999999999999999888876542 2678999999998544433 22 4567788888899999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEc-cCCcccccCC-CeEEEEEeeeeeec--
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQIT-KDSEILDDVG-DHHVYFVHSYRAMP-- 199 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~-~~~~l~~~l~-~~~~~~~H~~~v~~-- 199 (578)
||||+|||+|+.++ | +++.+. ...++.|+...... ..++++.+.+ .+.++++|++.+..
T Consensus 76 lGIC~G~Q~la~~~-------G-----~~v~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~v~~~~ 138 (192)
T PF00117_consen 76 LGICLGHQILAHAL-------G-----GKVVPS-----PEKPHHGGNIPISETPEDPLFYGLPESFKAYQYHSDAVNPDD 138 (192)
T ss_dssp EEETHHHHHHHHHT-------T-----HEEEEE-----ESEEEEEEEEEEEEEEEHGGGTTSTSEEEEEEEECEEEEEGH
T ss_pred EEEeehhhhhHHhc-------C-----Cccccc-----ccccccccccccccccccccccccccccccccccceeeeccc
Confidence 99999999999952 3 455441 12355665544333 2347777776 78999999999886
Q ss_pred -CCCCCCcEEEEeecCCc-eEEEEEe--CCEEEEeeCCcccCc-chHHHHHHHhh
Q 045794 200 -SDDNKEWVSSTCNYGDN-FIASVRR--GNVHAVQFHPEKSGD-VGLSVLRRFLH 249 (578)
Q Consensus 200 -~~~~~~~~~~~~~~~d~-~iegi~~--~~i~gvQFHPE~~~~-~~~~l~~~Fl~ 249 (578)
.+.. +.......++ .+++++. +++||+|||||++.. .+..++++|+-
T Consensus 139 ~~p~~---~~~la~s~~~~~~~~~~~~~~~i~g~QfHPE~~~~~~~~~~l~nf~~ 190 (192)
T PF00117_consen 139 LLPEG---FEVLASSSDGCPIQAIRHKDNPIYGVQFHPEFSSSPGGPQLLKNFFL 190 (192)
T ss_dssp HHHTT---EEEEEEETTTTEEEEEEECTTSEEEESSBTTSTTSTTHHHHHHHHHH
T ss_pred ccccc---cccccccccccccccccccccEEEEEecCCcCCCCCCcchhhhheeE
Confidence 4432 2233333233 5677764 359999999999876 45899999974
|
The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B .... |
| >TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=204.86 Aligned_cols=188 Identities=20% Similarity=0.280 Sum_probs=122.3
Q ss_pred ecCCCcccccC--CCCCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC---CC--CCCEEEECCCCCchHHHHHHH
Q 045794 33 FKSPRALSIRA--TSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED---IL--NANRLIFPGVGAFAAAMDVLN 105 (578)
Q Consensus 33 ~~~~~~~~~~~--~~~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d---l~--~~DGlILpGGg~~~~~~~~l~ 105 (578)
+++..++.... .+.+++|+++|+| .+++++++|+++|+++.++++..+ +. .+|||||+||+..... ..
T Consensus 157 vs~~~~~~~~~~~~~~~~~i~viD~G--~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~pDGIiLSgGPgdp~~---~~ 231 (358)
T TIGR01368 157 VSTKEPYTWGQKRGGKKKRVVVIDFG--VKQNILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPGDPAA---VE 231 (358)
T ss_pred eccCCCEEeCCCCCCCccEEEEEeCC--cHHHHHHHHHHCCCEEEEEcCCCCHHHHHhhCCCEEEECCCCCCHHH---HH
Confidence 44444444432 2233689999975 889999999999999999876533 32 4699999998532211 11
Q ss_pred hhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceee-eEEEEEccCCcccccC
Q 045794 106 KTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG-WNALQITKDSEILDDV 184 (578)
Q Consensus 106 ~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G-~~~i~~~~~~~l~~~l 184 (578)
...+.++++++ ++|+||||+|||+|+.+ .| +++.+.. ..+.| .+++.......+
T Consensus 232 --~~i~~i~~~~~-~~PILGIClG~QlLa~a-------~G-----g~v~kl~------~gh~G~nhpV~~~~~~~v---- 286 (358)
T TIGR01368 232 --PAIETIRKLLE-KIPIFGICLGHQLLALA-------FG-----AKTYKMK------FGHRGGNHPVKDLITGRV---- 286 (358)
T ss_pred --HHHHHHHHHHc-CCCEEEECHHHHHHHHH-------hC-----CceeccC------cCcCCCceeeEECCCCcE----
Confidence 23567777776 89999999999999995 34 3332211 11222 123322211111
Q ss_pred CCeEEEEEeeeeeecCCCC-CCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc--chHHHHHHHhhhcc
Q 045794 185 GDHHVYFVHSYRAMPSDDN-KEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD--VGLSVLRRFLHPKT 252 (578)
Q Consensus 185 ~~~~~~~~H~~~v~~~~~~-~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~--~~~~l~~~Fl~~~~ 252 (578)
....++|++.+...... ..+.....+.+|+.+|++++ .|+||+|||||..+. +...||++|++.+.
T Consensus 287 --~itsqnH~~aV~~~~l~~~~l~vta~~~nDg~Vegi~h~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~~~ 357 (358)
T TIGR01368 287 --EITSQNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKDLPVFSVQYHPEASPGPHDTEYLFDEFIDLIK 357 (358)
T ss_pred --EEeecCCCcEEcccccCCCceEEEEEECCCCcEEEEEECCCCEEEEEECCCCCCCCCChHHHHHHHHHHhh
Confidence 23457899988643322 23433334446788999995 589999999999754 67889999998764
|
This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. |
| >PRK13566 anthranilate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=218.26 Aligned_cols=186 Identities=24% Similarity=0.348 Sum_probs=139.7
Q ss_pred cCCCCCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC-----CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHH
Q 045794 42 RATSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED-----ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAY 116 (578)
Q Consensus 42 ~~~~~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d-----l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~ 116 (578)
..++..++|+|+|+++++.+++.++|++.|+++.+++...+ ..++|+|||+||+....+ ..+..+++.+
T Consensus 521 ~~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGpgsp~d------~~~~~lI~~a 594 (720)
T PRK13566 521 AAVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSD------FDCKATIDAA 594 (720)
T ss_pred CCCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCCCChhh------CCcHHHHHHH
Confidence 34567788999999999999999999999999998876532 357899999666422211 2356788888
Q ss_pred HhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCccee-eeEEEEEccCCcccccCC-CeEEEEEee
Q 045794 117 IEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQI-GWNALQITKDSEILDDVG-DHHVYFVHS 194 (578)
Q Consensus 117 ~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~-G~~~i~~~~~~~l~~~l~-~~~~~~~H~ 194 (578)
++.++||||||+|||+|+.+ .| +++.+. ..++. +++++.++..+++|++++ .+.++++|+
T Consensus 595 ~~~~iPILGIClG~QlLa~a-------lG-----G~V~~~------~~~~~G~~~~V~v~~~~~Lf~~lp~~~~v~~~Hs 656 (720)
T PRK13566 595 LARNLPIFGVCLGLQAIVEA-------FG-----GELGQL------AYPMHGKPSRIRVRGPGRLFSGLPEEFTVGRYHS 656 (720)
T ss_pred HHCCCcEEEEehhHHHHHHH-------cC-----CEEEEC------CCCccCCceEEEECCCCchhhcCCCCCEEEEecc
Confidence 88999999999999999995 23 566542 22333 356788888788888887 789999999
Q ss_pred eeeecCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCccc----CcchHHHHHHHhhhcc
Q 045794 195 YRAMPSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKS----GDVGLSVLRRFLHPKT 252 (578)
Q Consensus 195 ~~v~~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~----~~~~~~l~~~Fl~~~~ 252 (578)
+++.....+.. +......+++.++++++ .|+||+|||||+. ...+..||+||++.+.
T Consensus 657 ~~v~~~~Lp~~-~~vlA~s~dg~V~ai~~~~~pi~GVQFHPE~i~t~~~~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 657 LFADPETLPDE-LLVTAETEDGVIMAIEHKTLPVAAVQFHPESIMTLGGDVGLRIIENVVRLLA 719 (720)
T ss_pred eeEeeccCCCc-eEEEEEeCCCcEEEEEECCCCEEEEeccCeeCCcCCchhHHHHHHHHHHHhh
Confidence 87754222222 33444446678999996 4899999999983 2468999999998764
|
|
| >cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=184.91 Aligned_cols=181 Identities=29% Similarity=0.460 Sum_probs=131.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEech
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLG 129 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG 129 (578)
|+|+.+ .+...+..++|++.|+++.+++..+++.++|+||+|||+....+ .......+.+.|+++++.++|+||||+|
T Consensus 1 igvl~~-qg~~~e~~~~l~~~g~~v~~v~~~~~l~~~dgiii~Gg~~~~~~-~~~~~~~~~~~i~~~~~~g~PvlGiC~G 78 (183)
T cd01749 1 IGVLAL-QGDFREHIRALERLGVEVIEVRTPEDLEGIDGLIIPGGESTTIG-KLLRRTGLLDPLREFIRAGKPVFGTCAG 78 (183)
T ss_pred CEEEEe-cCCcHHHHHHHHHCCCeEEEECCHHHhccCCEEEECCchHHHHH-HHHHhCCHHHHHHHHHHcCCeEEEECHH
Confidence 345555 35555666999999999999999888999999999998743322 2333446788899999999999999999
Q ss_pred HHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccC--CCeEEEEEeeeeeecCCCCCCcE
Q 045794 130 LQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDV--GDHHVYFVHSYRAMPSDDNKEWV 207 (578)
Q Consensus 130 ~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l--~~~~~~~~H~~~v~~~~~~~~~~ 207 (578)
+|+|+.++...+...|+|+++.++.+.. ..+..|+....++ +... ..+.++.+|...+...++....
T Consensus 79 ~qlL~~~~~~~~~~~glG~~~~~v~~~~-----~g~~~g~~~~~l~-----~~~~~~~~~~~~~~h~~~v~~~p~~~~~- 147 (183)
T cd01749 79 LILLAKEVEDQGGQPLLGLLDITVRRNA-----FGRQVDSFEADLD-----IPGLGLGPFPAVFIRAPVIEEVGPGVEV- 147 (183)
T ss_pred HHHHHHHhcccCCCCccCceeEEEEeec-----cccccceEEEcCC-----CCcCCCCccEEEEEECcEEEEcCCCcEE-
Confidence 9999998765456789999999987621 2234454444332 1122 2578889999888766553332
Q ss_pred EEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHh
Q 045794 208 SSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFL 248 (578)
Q Consensus 208 ~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl 248 (578)
.++. +..+++++.+++||+|||||++.. .+++++|+
T Consensus 148 la~~---~~~~~a~~~~~~~g~qfHPE~~~~--~~~~~~f~ 183 (183)
T cd01749 148 LAEY---DGKIVAVRQGNVLATSFHPELTDD--TRIHEYFL 183 (183)
T ss_pred EEec---CCEEEEEEECCEEEEEcCCccCCC--cchhhhhC
Confidence 2332 345568888899999999999864 37888885
|
Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6. |
| >PRK12838 carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-21 Score=199.47 Aligned_cols=188 Identities=19% Similarity=0.248 Sum_probs=123.8
Q ss_pred ecCCCcccccCCCCCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC---C--CCCCEEEECCCCCchHHHHHHHhh
Q 045794 33 FKSPRALSIRATSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED---I--LNANRLIFPGVGAFAAAMDVLNKT 107 (578)
Q Consensus 33 ~~~~~~~~~~~~~~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d---l--~~~DGlILpGGg~~~~~~~~l~~~ 107 (578)
++++.++... ..+++|+++|+| .+.+++++|+++|+++.++++..+ + .++|||||+||+....+..
T Consensus 155 vs~~~~~~~~--~~~~~V~viD~G--~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~DGIiLsgGPgdp~~~~----- 225 (354)
T PRK12838 155 VSTKEPYTYG--NGGKHVALIDFG--YKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVLSNGPGDPKELQ----- 225 (354)
T ss_pred EEcCCCEEeC--CCCCEEEEECCC--HHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEEcCCCCChHHhH-----
Confidence 3344444432 235789999975 899999999999999999876532 3 3699999998863222211
Q ss_pred cHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCe
Q 045794 108 GMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDH 187 (578)
Q Consensus 108 ~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~ 187 (578)
...+.++++++. +|+||||+|||+|+.+ .| +++.+... ..+-+.+++........ +
T Consensus 226 ~~~~~i~~~~~~-~PvlGIClG~QlLa~a-------~G-----g~v~kl~~-----gh~G~~hpV~~~~~~~~------~ 281 (354)
T PRK12838 226 PYLPEIKKLISS-YPILGICLGHQLIALA-------LG-----ADTEKLPF-----GHRGANHPVIDLTTGRV------W 281 (354)
T ss_pred HHHHHHHHHhcC-CCEEEECHHHHHHHHH-------hC-----CEEecCCC-----CccCCceEEEECCCCeE------E
Confidence 234567777766 9999999999999995 24 45443211 01123345543322222 2
Q ss_pred EEEEEeeeeeecCCCCCC-cEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc--chHHHHHHHhhhccC
Q 045794 188 HVYFVHSYRAMPSDDNKE-WVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD--VGLSVLRRFLHPKTN 253 (578)
Q Consensus 188 ~~~~~H~~~v~~~~~~~~-~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~--~~~~l~~~Fl~~~~~ 253 (578)
.+.++|++.+........ +.....+.+++.+|++++ .|+||+|||||+... ++..||++|++.++.
T Consensus 282 ~ts~~H~~aV~~~sl~~~~l~v~a~~~~Dg~Veai~~~~~pi~gVQfHPE~~~gp~d~~~lF~~F~~~~~~ 352 (354)
T PRK12838 282 MTSQNHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKPVLSVQFHPEAHPGPHDAEYIFDEFLEMMEK 352 (354)
T ss_pred EeccchheEecccccCCCCcEEEEEECCCCeEEEEEECCCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHh
Confidence 345688888864322222 333333456789999995 489999999998653 678999999998753
|
|
| >KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=211.96 Aligned_cols=180 Identities=18% Similarity=0.212 Sum_probs=137.5
Q ss_pred CCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCC--CCCCEEEECCC-CCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 46 SDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDI--LNANRLIFPGV-GAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 46 ~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl--~~~DGlILpGG-g~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
...+|+.+| ||.+.|++|+|..+|+++.++++..++ .+||||++++| |++.-.. .+.+.+++.++.++|
T Consensus 171 k~~~I~aiD--cG~K~N~IRcL~~RGa~vtVvPw~~~i~~~~yDGlflSNGPGdPe~~~------~~v~~vr~lL~~~~P 242 (1435)
T KOG0370|consen 171 KSLRILAID--CGLKYNQIRCLVKRGAEVTVVPWDYPIAKEEYDGLFLSNGPGDPELCP------LLVQNVRELLESNVP 242 (1435)
T ss_pred cccEEEEcc--cCchHHHHHHHHHhCceEEEecCCccccccccceEEEeCCCCCchhhH------HHHHHHHHHHhCCCC
Confidence 345566666 679999999999999999999998775 47999999887 4432221 123456666667799
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCC
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~ 202 (578)
|||||+|||+||.+ .|..+++++ |+++ +++.|+..... .. -+-..++|+|.++....
T Consensus 243 vfGIClGHQllA~A-------aGakT~KmK---yGNR-GhNiP~~~~~t----Gr--------c~ITSQNHGYAVD~~tL 299 (1435)
T KOG0370|consen 243 VFGICLGHQLLALA-------AGAKTYKMK---YGNR-GHNIPCTCRAT----GR--------CFITSQNHGYAVDPATL 299 (1435)
T ss_pred eEEEehhhHHHHHh-------hCCceEEee---cccc-CCCccceeccC----ce--------EEEEecCCceeeccccc
Confidence 99999999999995 576666655 7776 66666653110 00 12335899999988666
Q ss_pred CCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc--chHHHHHHHhhhccCCCC
Q 045794 203 NKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD--VGLSVLRRFLHPKTNIPK 256 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~--~~~~l~~~Fl~~~~~~~~ 256 (578)
+..|-..+.+.+|+..+++.+ +|++++|||||.+++ ++..+|+.|++.+.....
T Consensus 300 p~gWk~lFvN~NDgSNEGI~Hss~P~fSvQFHPEat~GP~DTeyLFDiFi~lvkk~ks 357 (1435)
T KOG0370|consen 300 PAGWKPLFVNANDGSNEGIMHSSKPFFSVQFHPEATPGPHDTEYLFDVFIELVKKSKS 357 (1435)
T ss_pred cCCCchheeecccCCCceEecCCCCceeeecCCcCCCCCcchHHHHHHHHHHHHHHhc
Confidence 678888899999999999985 599999999999765 889999999999887744
|
|
| >CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=198.63 Aligned_cols=175 Identities=15% Similarity=0.234 Sum_probs=115.9
Q ss_pred CCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC---C--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCC
Q 045794 46 SDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED---I--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKD 120 (578)
Q Consensus 46 ~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d---l--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g 120 (578)
.+++|+|+|++ .++++.++|+++|+++.++++..+ + .++|||||+||+....... .+.+.++++++.+
T Consensus 191 ~~~~I~viD~g--~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~dgIilSgGPg~p~~~~-----~~i~~i~~~~~~~ 263 (382)
T CHL00197 191 YQLKIIVIDFG--VKYNILRRLKSFGCSITVVPATSPYQDILSYQPDGILLSNGPGDPSAIH-----YGIKTVKKLLKYN 263 (382)
T ss_pred CCCEEEEEECC--cHHHHHHHHHHCCCeEEEEcCCCCHHHHhccCCCEEEEcCCCCChhHHH-----HHHHHHHHHHhCC
Confidence 36789999974 999999999999999999976532 2 3689999988843222211 2345566666678
Q ss_pred CCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceee-eEEEEEccCCcccccCCCe-EEEEEeeeeee
Q 045794 121 RPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG-WNALQITKDSEILDDVGDH-HVYFVHSYRAM 198 (578)
Q Consensus 121 ~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G-~~~i~~~~~~~l~~~l~~~-~~~~~H~~~v~ 198 (578)
+|+||||+|||+|+.+ .| +++.+.. ..+.| .+++..+ ..+ ...++|++.+.
T Consensus 264 ~PilGIClGhQlLa~a-------~G-----g~v~k~~------~Gh~g~n~pv~~~---------~~v~itsq~H~~~v~ 316 (382)
T CHL00197 264 IPIFGICMGHQILSLA-------LE-----AKTFKLK------FGHRGLNHPSGLN---------QQVEITSQNHGFAVN 316 (382)
T ss_pred CCEEEEcHHHHHHHHH-------hC-----CEEeccC------CCCCCCCEecCCC---------CceEEeecchheEee
Confidence 9999999999999995 23 4443311 11112 1221100 012 22467888775
Q ss_pred cCCCCC-CcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc--chHHHHHHHhhhccCC
Q 045794 199 PSDDNK-EWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD--VGLSVLRRFLHPKTNI 254 (578)
Q Consensus 199 ~~~~~~-~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~--~~~~l~~~Fl~~~~~~ 254 (578)
...... ++.....+.+++.+|++++ .|+||+|||||+.+. +...+|++|++.++..
T Consensus 317 ~~sv~~~~~~vt~~~~nDgtvegi~h~~~pi~gVQFHPE~~~gp~d~~~lf~~Fv~~~~~~ 377 (382)
T CHL00197 317 LESLAKNKFYITHFNLNDGTVAGISHSPKPYFSVQYHPEASPGPHDADYLFEYFIEIIKHS 377 (382)
T ss_pred ccccCCCCcEEEEEECCCCCEEEEEECCCCcEEEeeCCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 332221 2333333445788999995 489999999999653 5667999999988764
|
|
| >PRK06490 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=188.00 Aligned_cols=176 Identities=21% Similarity=0.298 Sum_probs=126.4
Q ss_pred cEEEEE-ECCCCCHHHHHHHHHHCCCeEEEeCC------ccCCCCCCEEEECCCCCc-hHHHHHHHhhcHHHHHHHHHhC
Q 045794 48 SVVTLL-DYGAGNVRSVRNAIRHLGFGIKDVQT------PEDILNANRLIFPGVGAF-AAAMDVLNKTGMAEALCAYIEK 119 (578)
Q Consensus 48 ~~I~vl-d~~~g~~~~i~~~L~~~Gv~v~~v~~------~~dl~~~DGlILpGGg~~-~~~~~~l~~~~l~~~i~~~~~~ 119 (578)
++|.|+ ++++++...+.++|+++|.++.+++. ++++.++||+||+||... .+...|+. .+.++|+++++.
T Consensus 8 ~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l~~~dgvii~Ggp~~~~d~~~wi~--~~~~~i~~~~~~ 85 (239)
T PRK06490 8 RPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTLEDHAGAVIFGGPMSANDPDDFIR--REIDWISVPLKE 85 (239)
T ss_pred ceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcccccCEEEEECCCCCCCCCchHHH--HHHHHHHHHHHC
Confidence 445555 78888999999999999998887753 235778999999998532 22334555 467889999999
Q ss_pred CCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeec
Q 045794 120 DRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMP 199 (578)
Q Consensus 120 g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~ 199 (578)
++|+||||+|||+|+.+ +| +++.+.. ...+++|++++.++...+.+..++ ..++++|++. ..
T Consensus 86 ~~PvLGIC~G~Qlla~a---------lG---G~V~~~~----~G~~e~G~~~i~~~~~~~~~~~~~-~~~~~~H~d~-~~ 147 (239)
T PRK06490 86 NKPFLGICLGAQMLARH---------LG---ARVAPHP----DGRVEIGYYPLRPTEAGRALMHWP-EMVYHWHREG-FD 147 (239)
T ss_pred CCCEEEECHhHHHHHHH---------cC---CEeecCC----CCCCccceEEeEECCCcccccCCC-CEEEEECCcc-cc
Confidence 99999999999999995 23 6765521 112478999999887666554443 4688899987 33
Q ss_pred CCCCCCcEEEEeecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHHHHhhh
Q 045794 200 SDDNKEWVSSTCNYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLRRFLHP 250 (578)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~~Fl~~ 250 (578)
.|... .++++ ..+..+++++. +++||+|||||++. .++++|+..
T Consensus 148 lP~~~-~~LA~--s~~~~~qa~~~~~~v~g~QfHPE~~~----~~~~~~i~~ 192 (239)
T PRK06490 148 LPAGA-ELLAT--GDDFPNQAFRYGDNAWGLQFHPEVTR----AMMHRWVVR 192 (239)
T ss_pred CCCCC-EEEEe--CCCCCeEEEEeCCCEEEEeeCccCCH----HHHHHHHHh
Confidence 44432 22333 23345788885 48999999999964 678888764
|
|
| >TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-20 Score=176.26 Aligned_cols=183 Identities=28% Similarity=0.385 Sum_probs=128.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHH-HhhcHHHHHHHHHhCCCCEEEEe
Q 045794 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVL-NKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 49 ~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l-~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
+|+|+.+ .|+..+..++|+++|+++++++.+++++++|+||||||.... +..+ ...++.+.|+++++.++|++|||
T Consensus 1 ~igvl~~-qg~~~e~~~~l~~~g~~~~~v~~~~~l~~~d~liipGG~~~~--~~~l~~~~~l~~~i~~~~~~g~pilGIC 77 (184)
T TIGR03800 1 KIGVLAL-QGAVREHARALEALGVEGVEVKRPEQLDEIDGLIIPGGESTT--LSRLLDKYGMFEPLRNFILSGLPVFGTC 77 (184)
T ss_pred CEEEEEc-cCCHHHHHHHHHHCCCEEEEECChHHhccCCEEEECCCCHHH--HHHHHHhccHHHHHHHHHHcCCcEEEEC
Confidence 3788888 589999999999999999999999899999999999985322 2222 33467888999999999999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcE
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWV 207 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~ 207 (578)
+|||+|+.++.... ...+|++++++.+... ....+.....++.... .. .+......|...+...+.. +
T Consensus 78 ~G~qlL~~~~~~~~-~~~lg~~~~~v~~~~~-----g~~~~s~~~~l~~~~~-~~--~~~~~~~~h~~~v~~lp~~---~ 145 (184)
T TIGR03800 78 AGLIMLAKEIIGQK-EGYLGLLDMTVERNAY-----GRQVDSFEAEVDIKGV-GD--DPITGVFIRAPKIVSVGNG---V 145 (184)
T ss_pred HHHHHHHhhhccCC-CCccCcEEEEEEeecc-----CCccccEEEEeecccC-CC--CcceEEEEcCCCcccCCCC---e
Confidence 99999999863211 1248888999877321 1234444443332111 00 0234456777766655432 3
Q ss_pred EEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 208 SSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 208 ~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
......+ +.+++++.+++||+|||||.+... ++++.|++
T Consensus 146 ~vla~~~-~~~~a~~~~~~~gvQfHPE~~~~~--~~~~~f~~ 184 (184)
T TIGR03800 146 EILAKVG-NRIVAVRQGNILVSSFHPELTDDH--RVHEYFLE 184 (184)
T ss_pred EEEEEeC-CeeEEEEeCCEEEEEeCCccCCCc--hHHHHhhC
Confidence 3333333 456788888999999999997544 89999974
|
Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase. |
| >cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-20 Score=176.26 Aligned_cols=168 Identities=21% Similarity=0.294 Sum_probs=110.2
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC-----CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED-----ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFL 124 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d-----l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIl 124 (578)
|+|+|+|+. +++.++++++|+++.+++...+ ..++|||||+||....... ....+.++++.+.++|+|
T Consensus 1 i~i~d~g~~--~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~~~~-----~~~~~~~~~~~~~~~Pvl 73 (178)
T cd01744 1 VVVIDFGVK--HNILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPALL-----DEAIKTVRKLLGKKIPIF 73 (178)
T ss_pred CEEEecCcH--HHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCChhHh-----HHHHHHHHHHHhCCCCEE
Confidence 579998855 6899999999999988875432 3579999999985322221 134567888888999999
Q ss_pred EEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceee-eEEEEEccCCcccccCCCeEEEEEeeeeeecCCCC
Q 045794 125 GICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG-WNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDN 203 (578)
Q Consensus 125 GIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G-~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~ 203 (578)
|||+|||+|+.+ .| +++.+.. .++.| .+++....... ...+..+|++.+.....+
T Consensus 74 GIC~G~Q~l~~~-------~G-----g~v~~~~------~~~~g~~~~v~~~~~~~------~~~v~~~H~~~v~~~~lp 129 (178)
T cd01744 74 GICLGHQLLALA-------LG-----AKTYKMK------FGHRGSNHPVKDLITGR------VYITSQNHGYAVDPDSLP 129 (178)
T ss_pred EECHHHHHHHHH-------cC-----CceecCC------CCCCCCceeeEEcCCCC------cEEEEcCceEEEcccccC
Confidence 999999999995 23 3333211 01111 23333322111 234567898887532222
Q ss_pred CCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc--chHHHHHHHh
Q 045794 204 KEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD--VGLSVLRRFL 248 (578)
Q Consensus 204 ~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~--~~~~l~~~Fl 248 (578)
..+.......+++.+|++++ .++||+|||||.... +...||++|+
T Consensus 130 ~~~~v~a~s~~~~~i~a~~~~~~~i~GvQfHPE~~~~~~~~~~lf~~f~ 178 (178)
T cd01744 130 GGLEVTHVNLNDGTVEGIRHKDLPVFSVQFHPEASPGPHDTEYLFDEFL 178 (178)
T ss_pred CceEEEEEECCCCcEEEEEECCCCeEEEeeCCCCCCCCCCchHhHhhhC
Confidence 23333322234567899985 489999999998653 5668999985
|
This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is |
| >PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-20 Score=193.71 Aligned_cols=158 Identities=22% Similarity=0.296 Sum_probs=105.7
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC---C--CCCCEEEECCCC-CchHHHHHHHhhcHHHHHHHHHhCCC
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED---I--LNANRLIFPGVG-AFAAAMDVLNKTGMAEALCAYIEKDR 121 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d---l--~~~DGlILpGGg-~~~~~~~~l~~~~l~~~i~~~~~~g~ 121 (578)
++|+++|+| ++++|+++|.++|++++++++..+ + .++|||||+||+ ++. ...+ ..+.+++++ .++
T Consensus 241 ~~IvviD~G--~K~nIlr~L~~~G~~v~VvP~~~~~~ei~~~~pDGIiLSnGPGDP~-~~~~-----~ie~ik~l~-~~i 311 (415)
T PLN02771 241 YHVIAYDFG--IKHNILRRLASYGCKITVVPSTWPASEALKMKPDGVLFSNGPGDPS-AVPY-----AVETVKELL-GKV 311 (415)
T ss_pred CEEEEECCC--hHHHHHHHHHHcCCeEEEECCCCCHHHHhhcCCCEEEEcCCCCChh-HhhH-----HHHHHHHHH-hCC
Confidence 678888865 999999999999999999987532 2 369999999984 332 2222 234455544 479
Q ss_pred CEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceee-eEEEEEccCCcccccCCCeEEEEEeeeeeecC
Q 045794 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG-WNALQITKDSEILDDVGDHHVYFVHSYRAMPS 200 (578)
Q Consensus 122 PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G-~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~ 200 (578)
||||||+|||+|+.+ .| +++.++ +..+.| .+++.......+ ..+.++|++.+.+.
T Consensus 312 PIlGICLGhQlLa~A-------lG-----Gkv~K~------~~Gh~G~n~pV~~~~~~~v------~itsqnHg~aVd~~ 367 (415)
T PLN02771 312 PVFGICMGHQLLGQA-------LG-----GKTFKM------KFGHHGGNHPVRNNRTGRV------EISAQNHNYAVDPA 367 (415)
T ss_pred CEEEEcHHHHHHHHh-------cC-----CeEEEC------CCCcccceEEEEECCCCCE------EEEecCHHHhhccc
Confidence 999999999999995 24 565542 122333 233332211111 24568999988544
Q ss_pred CCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc
Q 045794 201 DDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD 238 (578)
Q Consensus 201 ~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~ 238 (578)
..+..+.....+.+|+.+||+++ .++||+|||||..++
T Consensus 368 sLp~~~~vt~~nlnDgtvegi~~~~~pi~gVQFHPEa~pg 407 (415)
T PLN02771 368 SLPEGVEVTHVNLNDGSCAGLAFPALNVMSLQYHPEASPG 407 (415)
T ss_pred cCCCceEEEEEeCCCCcEEEEEECCCCEEEEEcCCCCCCC
Confidence 33333333334456789999985 489999999999754
|
|
| >PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-20 Score=200.70 Aligned_cols=179 Identities=19% Similarity=0.238 Sum_probs=125.1
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCc-------cCC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHh
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP-------EDI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIE 118 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~-------~dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~ 118 (578)
.+|+|+|+++++.+++.+.|+++|+++.+++.. +++ .++|+|||+||+....+.. ....+.+.+.
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~------~~~~i~~~~~ 75 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAG------CMPELLTRLR 75 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhCC------CCHHHHHHHh
Confidence 369999999999999999999999998888653 122 3478999988754333221 1122333345
Q ss_pred CCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeee
Q 045794 119 KDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRA 197 (578)
Q Consensus 119 ~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v 197 (578)
.++||||||+|||+|+.+ .| +++.+ ...+..|+.........++|.+++ .+.++.+|++.+
T Consensus 76 ~~iPILGIClG~QlLa~a-------~G-----G~V~~------~~~~~~G~~~~i~~~~~~lf~~~~~~~~v~~~Hs~~v 137 (531)
T PRK09522 76 GKLPIIGICLGHQAIVEA-------YG-----GYVGQ------AGEILHGKASSIEHDGQAMFAGLTNPLPVARYHSLVG 137 (531)
T ss_pred cCCCEEEEcHHHHHHHHh-------cC-----CEEEe------CCceeeeeEEEEeecCCccccCCCCCcEEEEehheec
Confidence 689999999999999994 23 56554 122334543222233456777776 689999999988
Q ss_pred ecCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccC-cchHHHHHHHhhhccCC
Q 045794 198 MPSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSG-DVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 198 ~~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~-~~~~~l~~~Fl~~~~~~ 254 (578)
...|.. +..... .++.++++++ .++||+|||||+.. .++..|++||++.+.+.
T Consensus 138 ~~lP~~---l~vlA~-sd~~v~ai~~~~~~i~GVQFHPEs~~T~~G~~il~NFl~~~~~~ 193 (531)
T PRK09522 138 SNIPAG---LTINAH-FNGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQQK 193 (531)
T ss_pred ccCCCC---cEEEEe-cCCCEEEEEECCCCEEEEEecCccccCcchHHHHHHHHHHHhhc
Confidence 655432 222222 3577899985 68999999999854 48999999999998764
|
|
| >PRK07053 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.6e-20 Score=181.50 Aligned_cols=172 Identities=22% Similarity=0.270 Sum_probs=121.8
Q ss_pred EEEEEEC-CCCCHHHHHHHHHHCCCeEEEeCCc------cCCCCCCEEEECCCCCchHH---HHHHHhhcHHHHHHHHHh
Q 045794 49 VVTLLDY-GAGNVRSVRNAIRHLGFGIKDVQTP------EDILNANRLIFPGVGAFAAA---MDVLNKTGMAEALCAYIE 118 (578)
Q Consensus 49 ~I~vld~-~~g~~~~i~~~L~~~Gv~v~~v~~~------~dl~~~DGlILpGGg~~~~~---~~~l~~~~l~~~i~~~~~ 118 (578)
+|.|+.. ...+...+.++|+++|.++.+++.. .++.++|+|||+||.....+ ..|+. .+.++|+++++
T Consensus 4 ~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~--~~~~~i~~~~~ 81 (234)
T PRK07053 4 TAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLA--PEIALLRQRLA 81 (234)
T ss_pred eEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHH--HHHHHHHHHHH
Confidence 4666643 3557778999999999998887642 23567999999998532222 23554 56788999999
Q ss_pred CCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccC---CcccccCC-CeEEEEEee
Q 045794 119 KDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKD---SEILDDVG-DHHVYFVHS 194 (578)
Q Consensus 119 ~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~---~~l~~~l~-~~~~~~~H~ 194 (578)
.++|+||||+|||+|+.+ .| +++.+ ...+++||.++.+++. +++. +++ .+.++++|+
T Consensus 82 ~~~PvlGIC~G~Qlla~a-------lG-----g~V~~------~~~~e~G~~~i~~t~~g~~~pl~-~~~~~~~~~~~H~ 142 (234)
T PRK07053 82 AGLPTLGICLGAQLIARA-------LG-----ARVYP------GGQKEIGWAPLTLTDAGRASPLR-HLGAGTPVLHWHG 142 (234)
T ss_pred CCCCEEEECccHHHHHHH-------cC-----CcEec------CCCCeEeEEEEEEeccccCChhh-cCCCcceEEEEeC
Confidence 999999999999999995 23 56544 1246899999988753 3443 444 678999999
Q ss_pred eeeecCCCCCCcEEEEeecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 195 YRAMPSDDNKEWVSSTCNYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 195 ~~v~~~~~~~~~~~~~~~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
+.+. .|.... +++++. ...+++++. +++||+|||||++. .+++.|+.
T Consensus 143 d~~~-lP~ga~-~La~s~--~~~~qaf~~g~~~~g~QfHpE~~~----~~~~~w~~ 190 (234)
T PRK07053 143 DTFD-LPEGAT-LLASTP--ACRHQAFAWGNHVLALQFHPEARE----DRFEAWLI 190 (234)
T ss_pred CEEe-cCCCCE-EEEcCC--CCCeeEEEeCCCEEEEeeCccCCH----HHHHHHHH
Confidence 8874 454333 333322 223588885 68999999999965 57777775
|
|
| >PRK13527 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.4e-20 Score=178.07 Aligned_cols=187 Identities=25% Similarity=0.362 Sum_probs=121.4
Q ss_pred EEEEEECC---CCCHHHHHHHHHHCCCeEEE--eCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 49 VVTLLDYG---AGNVRSVRNAIRHLGFGIKD--VQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 49 ~I~vld~~---~g~~~~i~~~L~~~Gv~v~~--v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
+|+|+-+. +.....+.++|+.+|.++.+ +..++++.++|+||||||..... .......++.+.|+++++.++|+
T Consensus 2 ~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~~~l~~~d~iii~GG~~~~~-~~~~~~~~~~~~i~~~~~~~~pi 80 (200)
T PRK13527 2 KIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRPGDLPDCDALIIPGGESTTI-GRLMKREGILDEIKEKIEEGLPI 80 (200)
T ss_pred EEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCChHHhccCCEEEECCCcHHHH-HHHHhhccHHHHHHHHHHCCCeE
Confidence 45665442 23445677889999975544 45556788999999999853322 12223336788999999999999
Q ss_pred EEEechHHHHhhhccc----CCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeee
Q 045794 124 LGICLGLQLLFQSSEE----NGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAM 198 (578)
Q Consensus 124 lGIClG~QlLa~a~~e----~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~ 198 (578)
||||+|+|+|+.++.. +....++|++++++.+.... ...+... ...++.+++ .+.++.+|++.+.
T Consensus 81 lGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g-----~~~~~~~-----~~~~~~~~~~~~~~~~~H~~~v~ 150 (200)
T PRK13527 81 LGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFG-----RQRDSFE-----AEIDLSGLDGPFHAVFIRAPAIT 150 (200)
T ss_pred EEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeecccc-----CccccEE-----EeEeccccCCcceEEEEcccccc
Confidence 9999999999997531 12234577777766542110 0011000 112244444 5788999998876
Q ss_pred cCCCCCCcEEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 199 PSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 199 ~~~~~~~~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
..+... .+.++ ..+. +++++.+++||+|||||++.. ..+|++|++.+.
T Consensus 151 ~lp~~~-~~la~--~~~~-~~a~~~~~~~g~QfHPE~~~~--~~l~~~f~~~~~ 198 (200)
T PRK13527 151 KVGGDV-EVLAK--LDDR-IVAVEQGNVLATAFHPELTDD--TRIHEYFLKKVK 198 (200)
T ss_pred ccCCCe-EEEEE--ECCE-EEEEEECCEEEEEeCCCCCCC--CHHHHHHHHHHh
Confidence 555422 22232 2333 457778899999999999865 589999999874
|
|
| >KOG3055 consensus Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=166.98 Aligned_cols=245 Identities=18% Similarity=0.262 Sum_probs=188.2
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeecccc---ccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKE---NEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPML 343 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~---~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~ 343 (578)
.+++||||++ +|+|. .|.|.. |.-... ..........++|+.|.+.|...-|++-|... .+ .
T Consensus 7 t~FrpCIDiH---~G~VKQIVGgTL---~~~d~dV~kTNfvS~kpssyYAklYK~~~l~G~HVImLGPn-----~~---~ 72 (263)
T KOG3055|consen 7 TQFRPCIDIH---KGKVKQIVGGTL---RDLDGDVLKTNFVSDKPSSYYAKLYKEDGLTGGHVIMLGPN-----SQ---A 72 (263)
T ss_pred cceecceeec---cCeeeeeecccc---ccCcCCcccccccccCchHHHHHHHhhcCCCcceEEEECCC-----cH---H
Confidence 5899999999 89977 555543 221111 11112234456899999999999999988531 11 2
Q ss_pred HHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhC
Q 045794 344 QVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY 423 (578)
Q Consensus 344 ~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (578)
..+..+- +..--+|+||||++ +.+..|++.||++||+.|..+++ ..| ..+-++.+.+..
T Consensus 73 AA~~ALh-~~Pg~LQvGGGIN~------------~Nc~~wl~egASkVIVTSwlF~~-g~f-------dL~RLk~i~s~~ 131 (263)
T KOG3055|consen 73 AAIGALH-AYPGGLQVGGGINS------------ENCMSWLEEGASKVIVTSWLFNN-GKF-------DLERLKDIVSIV 131 (263)
T ss_pred HHHHHHH-hCCCceeecCccCh------------HHHHHHHHhcCceEEEEEEeccC-Ccc-------cHHHHHHHHHHh
Confidence 3334443 35567999999999 45999999999999999999984 233 568899999999
Q ss_pred CCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC
Q 045794 424 GNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD 503 (578)
Q Consensus 424 g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d 503 (578)
|++|+++-+.+|+. +| .|.++++-|+.-+++.+-+---++.....+|+++|..+.+
T Consensus 132 GKdRlvvDlSCRkk--------------------Dg----Rw~~a~nkWQ~~td~eLne~~l~~L~~y~~EFLiHaaDVE 187 (263)
T KOG3055|consen 132 GKDRLVVDLSCRKK--------------------DG----RWAIATNKWQKFTDVELNEKSLEFLGGYSDEFLIHAADVE 187 (263)
T ss_pred CcceEEEEeeeecc--------------------CC----eEEEEechhhhhhheeeCHHHHHHHhccchhheeeccccc
Confidence 99999999999873 23 5899999999988877666655566666899999999999
Q ss_pred CCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh--cCchHHhhhhhh--ccCCCCHHHHHHHHHhC
Q 045794 504 GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRK--TNASAALAAGIF--HRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 504 G~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~--~G~~gv~vgsa~--~~~~~~~~~~~~~l~~~ 572 (578)
|...|+|-+++..+-+.+++|+.++||+.+++|+..+.+. ..+| +-+||++ ..|.+.++++.++=.++
T Consensus 188 Glc~GIDE~LV~kLgew~kip~tYAGG~~s~dDl~lvd~lskGkVD-lT~GSaLDIFGG~l~f~dvvaWn~kq 259 (263)
T KOG3055|consen 188 GLCLGIDEELVAKLGEWSKIPVTYAGGVTSMDDLELVDDLSKGKVD-LTVGSALDIFGGNLPFKDVVAWNHKQ 259 (263)
T ss_pred hhhcCccHHHHHHhccceecceEEecCceehhHHHHHHhhcCCcee-EEecchhhhhcCCcchhhhhhccccc
Confidence 9999999999999999999999999999999999887541 2355 4458876 56777888877665554
|
|
| >COG2071 Predicted glutamine amidotransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-20 Score=178.85 Aligned_cols=188 Identities=21% Similarity=0.237 Sum_probs=130.8
Q ss_pred HHHHHHHHHCCCeEEEeCCccC-------CCCCCEEEECCCCCchHHHH------------HHHhhcHHHHHHHHHhCCC
Q 045794 61 RSVRNAIRHLGFGIKDVQTPED-------ILNANRLIFPGVGAFAAAMD------------VLNKTGMAEALCAYIEKDR 121 (578)
Q Consensus 61 ~~i~~~L~~~Gv~v~~v~~~~d-------l~~~DGlILpGGg~~~~~~~------------~l~~~~l~~~i~~~~~~g~ 121 (578)
..++++...+|.-...++...+ ++..|||||+||.+..+..+ ..++.-.+.+|+.++++++
T Consensus 29 ~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~i 108 (243)
T COG2071 29 YDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGI 108 (243)
T ss_pred HHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCC
Confidence 3567778888877777774322 57799999999954333221 0122235678999999999
Q ss_pred CEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCC
Q 045794 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSD 201 (578)
Q Consensus 122 PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~ 201 (578)
||||||.|+|+|+.++... -+.-+...++. ..++ .....+...|.+.+.+++.+.+.+.+.. +.++|+|.+.+.
T Consensus 109 PILgICRG~QllNVa~GGt-L~q~i~~~~~~---~~H~-~~~~~~~~~H~V~i~~~s~La~i~g~~~-~~VNS~HhQaIk 182 (243)
T COG2071 109 PILGICRGLQLLNVALGGT-LYQDISEQPGH---IDHR-QPNPVHIESHEVHIEPGSKLAKILGESE-FMVNSFHHQAIK 182 (243)
T ss_pred CEEEEccchHHHHHHhcCe-eehhhhccccc---cccc-CCCCcccceeEEEecCCccHHHhcCccc-eeecchHHHHHH
Confidence 9999999999999964100 00000001111 2222 2223455688999888888876665444 778888888887
Q ss_pred CCCCcEEEEeecCCceEEEEEe---CCEEEEeeCCcccCc---chHHHHHHHhhhccCC
Q 045794 202 DNKEWVSSTCNYGDNFIASVRR---GNVHAVQFHPEKSGD---VGLSVLRRFLHPKTNI 254 (578)
Q Consensus 202 ~~~~~~~~~~~~~d~~iegi~~---~~i~gvQFHPE~~~~---~~~~l~~~Fl~~~~~~ 254 (578)
..++.+.+.+...|+.+||++. .+++|||||||+... ....||++|.+.++..
T Consensus 183 ~La~~L~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 183 KLAPGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNACKKH 241 (243)
T ss_pred HhCCCcEEEEECCCCcEEEEEecCCceEEEEecChhhhccCChHHHHHHHHHHHHHHhh
Confidence 7777788888888999999994 489999999999543 4689999999988754
|
|
| >PRK05665 amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-19 Score=178.00 Aligned_cols=165 Identities=17% Similarity=0.175 Sum_probs=115.1
Q ss_pred CHHH-HHHHHHHCCC--eEEEeCC-----ccCCCCCCEEEECCCCCchH-HHHHHHhhcHHHHHHHHHhCCCCEEEEech
Q 045794 59 NVRS-VRNAIRHLGF--GIKDVQT-----PEDILNANRLIFPGVGAFAA-AMDVLNKTGMAEALCAYIEKDRPFLGICLG 129 (578)
Q Consensus 59 ~~~~-i~~~L~~~Gv--~v~~v~~-----~~dl~~~DGlILpGGg~~~~-~~~~l~~~~l~~~i~~~~~~g~PIlGIClG 129 (578)
.+.. +.+.|...+. ++.+++. +.++.+|||+||+||..... +..|+. .+.++|+++.+.++|+||||+|
T Consensus 23 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~dgiiitGs~~~v~~~~pwi~--~l~~~i~~~~~~~~PilGIC~G 100 (240)
T PRK05665 23 GYGRMFEQLFARQPIAAEFVVYNVVQGDYPADDEKFDAYLVTGSKADSFGTDPWIQ--TLKTYLLKLYERGDKLLGVCFG 100 (240)
T ss_pred CHHHHHHHHHHhCCCCceEEEEeccCCCCCCCcccCCEEEECCCCCCccccchHHH--HHHHHHHHHHhcCCCEEEEeHH
Confidence 3344 5556677774 4444431 33567899999999954332 345665 5788999999999999999999
Q ss_pred HHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCcEE
Q 045794 130 LQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEWVS 208 (578)
Q Consensus 130 ~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~~~ 208 (578)
||+||.+ +| ++|.+. ....+.|+..+.++...+++..++ .+.++++|++.+...|.....+
T Consensus 101 hQlla~A---------lG---G~V~~~-----~~G~e~G~~~~~~~~~~~~~~~~~~~~~~~~~H~D~V~~LP~ga~~L- 162 (240)
T PRK05665 101 HQLLALL---------LG---GKAERA-----SQGWGVGIHRYQLAAHAPWMSPAVTELTLLISHQDQVTALPEGATVI- 162 (240)
T ss_pred HHHHHHH---------hC---CEEEeC-----CCCcccceEEEEecCCCccccCCCCceEEEEEcCCeeeeCCCCcEEE-
Confidence 9999995 23 676551 123467888888887777887766 7899999999987777654333
Q ss_pred EEeecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHH
Q 045794 209 STCNYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLR 245 (578)
Q Consensus 209 ~~~~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~ 245 (578)
+++ ....+++++. +++||+|||||++......+++
T Consensus 163 a~s--~~~~~q~~~~~~~~~g~QfHPE~~~~~~~~~l~ 198 (240)
T PRK05665 163 ASS--DFCPFAAYHIGDQVLCFQGHPEFVHDYSRALLD 198 (240)
T ss_pred EeC--CCCcEEEEEeCCCEEEEecCCcCcHHHHHHHHH
Confidence 332 2334788874 5899999999997643334443
|
|
| >PRK09065 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=179.76 Aligned_cols=162 Identities=22% Similarity=0.256 Sum_probs=113.6
Q ss_pred HHHHHHHHCCCeEEEeCCc-----cCCCCCCEEEECCCCCchH-HHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 62 SVRNAIRHLGFGIKDVQTP-----EDILNANRLIFPGVGAFAA-AMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 62 ~i~~~L~~~Gv~v~~v~~~-----~dl~~~DGlILpGGg~~~~-~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
.+.+.+...|.++.+++.. .++.++|||||+||+.... ...|+. .+.++|+++++.++||||||+|||+|+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~dgvvi~Gg~~~~~d~~~w~~--~~~~~i~~~~~~~~PvlGIC~G~Qlla~ 103 (237)
T PRK09065 26 WIRVALGLAEQPVVVVRVFAGEPLPAPDDFAGVIITGSWAMVTDRLDWSE--RTADWLRQAAAAGMPLLGICYGHQLLAH 103 (237)
T ss_pred HHHHHhccCCceEEEEeccCCCCCCChhhcCEEEEeCCCcccCCCchhHH--HHHHHHHHHHHCCCCEEEEChhHHHHHH
Confidence 3445566678888766443 2457899999999864332 234554 5678899999999999999999999999
Q ss_pred hcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEcc---CCcccccCC-CeEEEEEeeeeeecCCCCCCcEEEEe
Q 045794 136 SSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK---DSEILDDVG-DHHVYFVHSYRAMPSDDNKEWVSSTC 211 (578)
Q Consensus 136 a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~---~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~~~~~~ 211 (578)
+ .| +++.+. ....++|++.+.++. .++++++++ .+.++++|++.+...|... .+.++.
T Consensus 104 a-------lG-----g~V~~~-----~~g~e~G~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~d~v~~lp~~~-~~la~s 165 (237)
T PRK09065 104 A-------LG-----GEVGYN-----PAGRESGTVTVELHPAAADDPLFAGLPAQFPAHLTHLQSVLRLPPGA-VVLARS 165 (237)
T ss_pred H-------cC-----CccccC-----CCCCccceEEEEEccccccChhhhcCCccCcEeeehhhhhhhCCCCC-EEEEcC
Confidence 5 23 555431 123568999998875 346887776 6888999998876555432 222332
Q ss_pred ecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 212 NYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 212 ~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
.+..+++++. +++||+|||||++. .++..|+.
T Consensus 166 --~~~~iqa~~~~~~i~gvQfHPE~~~----~~~~~~~~ 198 (237)
T PRK09065 166 --AQDPHQAFRYGPHAWGVQFHPEFTA----HIMRAYLR 198 (237)
T ss_pred --CCCCeeEEEeCCCEEEEEeCCcCCH----HHHHHHHH
Confidence 2345789985 47999999999965 46666665
|
|
| >PLN02889 oxo-acid-lyase/anthranilate synthase | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.3e-19 Score=200.12 Aligned_cols=184 Identities=18% Similarity=0.202 Sum_probs=125.3
Q ss_pred cEEEEEECCCCCHHHHHHHHHHC-CCeEEEeCCcc----C-------CCCCCEEEECCC-CCchHHHHHHHhhcHHHHHH
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHL-GFGIKDVQTPE----D-------ILNANRLIFPGV-GAFAAAMDVLNKTGMAEALC 114 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~-Gv~v~~v~~~~----d-------l~~~DGlILpGG-g~~~~~~~~l~~~~l~~~i~ 114 (578)
++|++||+.+++.+||++.|++. |+++.+++.++ + +..+|+|||++| +++... .... ...+.+.
T Consensus 82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~-~d~G--i~~~~i~ 158 (918)
T PLN02889 82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCP-ADIG--ICLRLLL 158 (918)
T ss_pred ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccch-HHHH--HHHHHHH
Confidence 68999999999999999999998 99988887642 1 247899999776 443211 1111 1133444
Q ss_pred HHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCC-----eEE
Q 045794 115 AYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGD-----HHV 189 (578)
Q Consensus 115 ~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~-----~~~ 189 (578)
++ .++||||||+|||+|+.+ .| +++.+ ...+..|...........+|.+++. +.+
T Consensus 159 ~~--~~iPILGICLGhQ~i~~~-------~G-----g~V~~------~~~~~HG~~s~I~h~~~~lF~glp~~~~~~f~v 218 (918)
T PLN02889 159 EC--RDIPILGVCLGHQALGYV-------HG-----ARIVH------APEPVHGRLSEIEHNGCRLFDDIPSGRNSGFKV 218 (918)
T ss_pred Hh--CCCcEEEEcHHHHHHHHh-------cC-----ceEEe------CCCceeeeeeeEeecCchhhcCCCcCCCCCceE
Confidence 32 479999999999999994 34 66655 2334566533222345578888873 799
Q ss_pred EEEeeeeeecCCCCCCc-EEEEeecC---------------------------------------------------Cce
Q 045794 190 YFVHSYRAMPSDDNKEW-VSSTCNYG---------------------------------------------------DNF 217 (578)
Q Consensus 190 ~~~H~~~v~~~~~~~~~-~~~~~~~~---------------------------------------------------d~~ 217 (578)
..+|+..+...+.+..+ ..++.... .+.
T Consensus 219 ~RYHSL~v~~~~lP~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 298 (918)
T PLN02889 219 VRYHSLVIDAESLPKELVPIAWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKI 298 (918)
T ss_pred EeCCCcccccCCCCCceEEEEEECCCcccccccccccccccccccccccccccccccccccccccccccccccccCCCCe
Confidence 99999988532221111 22222110 157
Q ss_pred EEEEEe--CCEEEEeeCCcccC-cchHHHHHHHhhhccCC
Q 045794 218 IASVRR--GNVHAVQFHPEKSG-DVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 218 iegi~~--~~i~gvQFHPE~~~-~~~~~l~~~Fl~~~~~~ 254 (578)
++|+++ .|+||+|||||... ..+..||+||++.++..
T Consensus 299 iMairH~~~P~~GVQfHPESi~t~~G~~l~~nF~~~~~~~ 338 (918)
T PLN02889 299 LMGIMHSTRPHYGLQFHPESIATCYGRQIFKNFREITQDY 338 (918)
T ss_pred eEEEEECCCceEEEEeCCccccCchhHHHHHHHHHHHHHH
Confidence 899996 49999999999843 47899999999988744
|
|
| >TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.6e-19 Score=199.95 Aligned_cols=184 Identities=18% Similarity=0.190 Sum_probs=122.6
Q ss_pred CCCcEEEEEECCCCCHHHHHHHHHHC-C--CeEEEeCCcc-------CCCCCCEEEECCC-CCchHHHHHHHhhcHHHHH
Q 045794 45 SSDSVVTLLDYGAGNVRSVRNAIRHL-G--FGIKDVQTPE-------DILNANRLIFPGV-GAFAAAMDVLNKTGMAEAL 113 (578)
Q Consensus 45 ~~~~~I~vld~~~g~~~~i~~~L~~~-G--v~v~~v~~~~-------dl~~~DGlILpGG-g~~~~~~~~l~~~~l~~~i 113 (578)
..+++|++||+++++++|+++.|++. | +++.+++... ++.++|+|||+|| +++.. ... ...+
T Consensus 3 ~~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~-~~~------~~i~ 75 (742)
T TIGR01823 3 QQRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNN-AQD------MGII 75 (742)
T ss_pred CCCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccc-hhh------hHHH
Confidence 35778999999999999999999987 3 5667665431 2467999999766 43321 111 1223
Q ss_pred HHHHh----CCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeee-EEEEEccCCcccccCCCeE
Q 045794 114 CAYIE----KDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW-NALQITKDSEILDDVGDHH 188 (578)
Q Consensus 114 ~~~~~----~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~-~~i~~~~~~~l~~~l~~~~ 188 (578)
+++.+ .++||||||+|||+|+.+ .| +++.++ ..++.|+ +.+.. ....+|.+++.+.
T Consensus 76 ~~i~~~~~~~~iPvLGIClG~QlLa~a-------~G-----G~v~~~------~~~~hG~~~~v~~-~~~~lf~gl~~~~ 136 (742)
T TIGR01823 76 SELWELANLDEVPVLGICLGFQSLCLA-------QG-----ADISRL------PTPKHGQVYEMHT-NDAAIFCGLFSVK 136 (742)
T ss_pred HHHHHhcccCCCcEEEEchhhHHHHhh-------cC-----CEEEEC------CCCCcCeEEEEEE-CCccccCCCCCCc
Confidence 33333 359999999999999994 23 566552 2234554 33433 3456777777788
Q ss_pred EEEEeeeeeecCCCCCCcEEEEeec-CCceEEEEEe--CCEEEEeeCCcccCc--chHHHHHHHhhhccCC
Q 045794 189 VYFVHSYRAMPSDDNKEWVSSTCNY-GDNFIASVRR--GNVHAVQFHPEKSGD--VGLSVLRRFLHPKTNI 254 (578)
Q Consensus 189 ~~~~H~~~v~~~~~~~~~~~~~~~~-~d~~iegi~~--~~i~gvQFHPE~~~~--~~~~l~~~Fl~~~~~~ 254 (578)
++.+|++.+................ +++.++++++ .|+||+|||||.... .+..||++|++.+...
T Consensus 137 v~~~Hs~~v~~~~~~~l~~~~~a~~~~~~~i~ai~h~~~pi~GVQFHPE~~~s~~g~~~Lf~nFl~~~~~~ 207 (742)
T TIGR01823 137 STRYHSLYANPEGIDTLLPLCLTEDEEGIILMSAQTKKKPWFGVQYHPESCCSELGSGKLVSNFLKLAFIN 207 (742)
T ss_pred eeEEEEEEccCCCCCcceEEEEEEcCCCCeEEEEEEcCCceEEEEeCcccCCCCccHHHHHHHHHHHHHHh
Confidence 8999999875432222112223222 2357899884 599999999999543 3489999999987755
|
This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. |
| >PRK13526 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=163.51 Aligned_cols=176 Identities=24% Similarity=0.362 Sum_probs=123.4
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
++|+|+.+ .|...+..++|++.|+++..++.++++.++|+||||||. ....+..++..++.+.|+++.+ ++|++|||
T Consensus 3 ~~igVLal-qG~~~Eh~~al~~lG~~v~~v~~~~~l~~~D~LILPGG~-~t~~~~ll~~~~l~~~Ik~~~~-~kpilGIC 79 (179)
T PRK13526 3 QKVGVLAI-QGGYQKHADMFKSLGVEVKLVKFNNDFDSIDRLVIPGGE-STTLLNLLNKHQIFDKLYNFCS-SKPVFGTC 79 (179)
T ss_pred cEEEEEEC-CccHHHHHHHHHHcCCcEEEECCHHHHhCCCEEEECCCh-HHHHHHHhhhcCcHHHHHHHHc-CCcEEEEc
Confidence 56999998 588888999999999999999999999999999999973 3444455555678899999875 78999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcE
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWV 207 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~ 207 (578)
.|+|+|+.. ..+||++++++.++... .... .|. ..+. +.+. ++++.++.--.+... .+.+
T Consensus 80 aG~qlL~~~------s~~Lg~idg~V~Rn~~G--rq~~--sf~-~~~~-----~~~~-~~~~vFiRAP~i~~~---~~~v 139 (179)
T PRK13526 80 AGSIILSKG------EGYLNLLDLEVQRNAYG--RQVD--SFV-ADIS-----FNDK-NITGVFIRAPKFIVV---GNQV 139 (179)
T ss_pred HHHHHHHcc------CCCCCCccEEEEEcCCC--Cccc--eee-eecC-----cCCc-eEEEEEEcCceEeEc---CCCc
Confidence 999999994 36899999999985432 1100 111 0110 0111 233333222222222 2223
Q ss_pred EEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 208 SSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 208 ~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
......+ +.+-+++++|++++-||||.+.+. ++.++|++
T Consensus 140 ~vla~~~-~~~v~v~q~~~l~~~FHPElt~d~--r~h~~f~~ 178 (179)
T PRK13526 140 DILSKYQ-NSPVLLRQANILVSSFHPELTQDP--TVHEYFLA 178 (179)
T ss_pred EEEEEEC-CEEEEEEECCEEEEEeCCccCCCc--hHHHHHhc
Confidence 3333333 456789999999999999998644 89999986
|
|
| >cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-19 Score=169.74 Aligned_cols=171 Identities=24% Similarity=0.366 Sum_probs=121.0
Q ss_pred EEEEECCCC-CHHHHHHHHHHCC---CeEEEeCCc-----cCCCCCCEEEECCCCCch--HHHHHHHhhcHHHHHHHHHh
Q 045794 50 VTLLDYGAG-NVRSVRNAIRHLG---FGIKDVQTP-----EDILNANRLIFPGVGAFA--AAMDVLNKTGMAEALCAYIE 118 (578)
Q Consensus 50 I~vld~~~g-~~~~i~~~L~~~G---v~v~~v~~~-----~dl~~~DGlILpGGg~~~--~~~~~l~~~~l~~~i~~~~~ 118 (578)
|+|+..... ....+.++++++| +++++++.. .++.++||||||||.... ....+.. .+.+.++++.+
T Consensus 2 i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~dgvil~Gg~~~~~~~~~~~~~--~~~~~i~~~~~ 79 (188)
T cd01741 2 ILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGPMSVDEDDYPWLK--KLKELIRQALA 79 (188)
T ss_pred EEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCCCCCcccCCEEEECCCCccCCccCChHHH--HHHHHHHHHHH
Confidence 566654321 2457888999998 677776543 247889999999986433 2333444 56788999999
Q ss_pred CCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccC---CcccccCC-CeEEEEEee
Q 045794 119 KDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKD---SEILDDVG-DHHVYFVHS 194 (578)
Q Consensus 119 ~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~---~~l~~~l~-~~~~~~~H~ 194 (578)
.++|+||||+|||+|+.++ | +++.+. ...++.|++++.++.. .+++++++ .+.++++|+
T Consensus 80 ~~~pilgiC~G~q~l~~~l-------G-----G~v~~~-----~~~~~~g~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~ 142 (188)
T cd01741 80 AGKPVLGICLGHQLLARAL-------G-----GKVGRN-----PKGWEIGWFPVTLTEAGKADPLFAGLPDEFPVFHWHG 142 (188)
T ss_pred CCCCEEEECccHHHHHHHh-------C-----CEEecC-----CCcceeEEEEEEeccccccCchhhcCCCcceEEEEec
Confidence 9999999999999999952 2 566552 1225789999988764 34566665 678999999
Q ss_pred eeeecCCCCCCcEEEEeecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHHHHh
Q 045794 195 YRAMPSDDNKEWVSSTCNYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLRRFL 248 (578)
Q Consensus 195 ~~v~~~~~~~~~~~~~~~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~~Fl 248 (578)
+.+...+.. ....++. ++..+++++. +++||+||||| ..++++|+
T Consensus 143 ~~v~~lp~~-~~~la~~--~~~~v~~~~~~~~~~g~QfHPE------~~~~~~f~ 188 (188)
T cd01741 143 DTVVELPPG-AVLLASS--EACPNQAFRYGDRALGLQFHPE------ERLLRNFL 188 (188)
T ss_pred cChhhCCCC-CEEeecC--CCCCcceEEecCCEEEEccCch------HHHHhhhC
Confidence 998765542 2222332 3456788885 69999999999 47888884
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.4e-19 Score=174.05 Aligned_cols=187 Identities=25% Similarity=0.247 Sum_probs=144.0
Q ss_pred EEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 303 VRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 303 ~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
.....+|+++|+.|.+.||+.||++|+++...+. .+.++.+++.+.+||+++++|++.++ ++.
T Consensus 27 ~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~------~~~~~~i~~~v~iPi~~~~~i~~~~~-----------v~~ 89 (217)
T cd00331 27 IREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGS------LEDLRAVREAVSLPVLRKDFIIDPYQ-----------IYE 89 (217)
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCC------HHHHHHHHHhcCCCEEECCeecCHHH-----------HHH
Confidence 3345799999999999999999999999875432 34555565567899999999999744 999
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
++++|||.|++++..+.. +.++ +++++. ..+|-+.
T Consensus 90 ~~~~Gad~v~l~~~~~~~--~~~~-------~~~~~~-~~~g~~~----------------------------------- 124 (217)
T cd00331 90 ARAAGADAVLLIVAALDD--EQLK-------ELYELA-RELGMEV----------------------------------- 124 (217)
T ss_pred HHHcCCCEEEEeeccCCH--HHHH-------HHHHHH-HHcCCeE-----------------------------------
Confidence 999999999999888762 2221 333332 3344221
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhh--CCCcEEEecCCCCHHHHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDA--VSIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~--~~ipVIasGGi~s~eDi~~l 540 (578)
.+.+++|. -++++.+.|++.+.+| .++++..++|+++++++++. .++|++++|||.+++|++++
T Consensus 125 ---~v~v~~~~---------e~~~~~~~g~~~i~~t--~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~ 190 (217)
T cd00331 125 ---LVEVHDEE---------ELERALALGAKIIGIN--NRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRL 190 (217)
T ss_pred ---EEEECCHH---------HHHHHHHcCCCEEEEe--CCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHH
Confidence 12233333 3677888999999999 57788889999999999887 46899999999999999999
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
.+ .|++||++||+++....+.+.++
T Consensus 191 ~~-~Ga~gvivGsai~~~~~p~~~~~ 215 (217)
T cd00331 191 AE-AGADAVLIGESLMRAPDPGAALR 215 (217)
T ss_pred HH-cCCCEEEECHHHcCCCCHHHHHH
Confidence 85 89999999999998775444443
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.8e-19 Score=194.61 Aligned_cols=178 Identities=21% Similarity=0.257 Sum_probs=122.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCe-EEEeCCcc----CC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFG-IKDVQTPE----DI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~-v~~v~~~~----dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
|.|+|..+++.+++.+.|+++|.+ +.++.+.. ++ .++|+|||+||+....+.. ...+.++. +..++|
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~-----~~~~li~~-~~~~~P 75 (534)
T PRK14607 2 IILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAG-----ISVEVIRH-FSGKVP 75 (534)
T ss_pred EEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCC-----ccHHHHHH-hhcCCC
Confidence 899999999999999999999985 66664332 22 3589999998864332211 12344544 467899
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCC
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSD 201 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~ 201 (578)
|||||+|||+|+.+ .| +++.+. ..++.|+........+++|.+++ .+.++++|++.+....
T Consensus 76 vLGIClG~QlLa~a-------~G-----g~V~~~------~~~~~G~~~~v~~~~~~lf~~~~~~~~v~~~Hs~~v~~~~ 137 (534)
T PRK14607 76 ILGVCLGHQAIGYA-------FG-----GKIVHA------KRILHGKTSPIDHNGKGLFRGIPNPTVATRYHSLVVEEAS 137 (534)
T ss_pred EEEEcHHHHHHHHH-------cC-----CeEecC------CccccCCceeEEECCCcchhcCCCCcEEeeccchheeccc
Confidence 99999999999995 23 455441 11234443332334556777776 5788999999875322
Q ss_pred CCCCcEEEEeecCCceEEEEEeC--CEEEEeeCCcccC-cchHHHHHHHhhhcc
Q 045794 202 DNKEWVSSTCNYGDNFIASVRRG--NVHAVQFHPEKSG-DVGLSVLRRFLHPKT 252 (578)
Q Consensus 202 ~~~~~~~~~~~~~d~~iegi~~~--~i~gvQFHPE~~~-~~~~~l~~~Fl~~~~ 252 (578)
.+.. +.......++.+++++++ ++||+|||||... .++..||++|++.+.
T Consensus 138 lp~~-~~vlA~s~d~~i~a~~~~~~pi~GvQFHPE~~~t~~g~~i~~nFl~~~~ 190 (534)
T PRK14607 138 LPEC-LEVTAKSDDGEIMGIRHKEHPIFGVQFHPESILTEEGKRILKNFLNYQR 190 (534)
T ss_pred CCCC-eEEEEEcCCCCEEEEEECCCCEEEEEeCCCCCCChhHHHHHHHHHHHhh
Confidence 2222 333333456779999953 7999999999853 478899999999765
|
|
| >PRK08250 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=173.72 Aligned_cols=177 Identities=17% Similarity=0.158 Sum_probs=120.1
Q ss_pred EEEEEE-CCCCCHHHHHHHHHHCCCeEEEeCCc------cCCCCCCEEEECCCCCchH----HHHHHHhhcHHHHHHHHH
Q 045794 49 VVTLLD-YGAGNVRSVRNAIRHLGFGIKDVQTP------EDILNANRLIFPGVGAFAA----AMDVLNKTGMAEALCAYI 117 (578)
Q Consensus 49 ~I~vld-~~~g~~~~i~~~L~~~Gv~v~~v~~~------~dl~~~DGlILpGGg~~~~----~~~~l~~~~l~~~i~~~~ 117 (578)
+|.|+- .+.--...+..+++++|+++.++... .++.++||||++||..... ...|+....+.++|++++
T Consensus 2 ~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~ 81 (235)
T PRK08250 2 RVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAGEALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAI 81 (235)
T ss_pred eEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCCCCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHHHH
Confidence 455553 22334456778889999888775422 1356799999999854322 222442124567899999
Q ss_pred hCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccC---CcccccCC-CeEEEEEe
Q 045794 118 EKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKD---SEILDDVG-DHHVYFVH 193 (578)
Q Consensus 118 ~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~---~~l~~~l~-~~~~~~~H 193 (578)
+.++|+||||+|+|+|+.+ .| ++|.+ ...+++|+.++.++.. ++++..++ .+.++++|
T Consensus 82 ~~~~PvlGIC~G~Qlla~a-------lG-----g~V~~------~~~~e~G~~~v~lt~~g~~d~l~~~~~~~~~v~~~H 143 (235)
T PRK08250 82 KAGKAVIGVCLGAQLIGEA-------LG-----AKYEH------SPEKEIGYFPITLTEAGLKDPLLSHFGSTLTVGHWH 143 (235)
T ss_pred HcCCCEEEEChhHHHHHHH-------hC-----ceecc------CCCCceeEEEEEEccccccCchhhcCCCCcEEEEEe
Confidence 9999999999999999995 23 67654 1236899999998763 46787776 78899999
Q ss_pred eeeeecCCCCCCcEEEEeecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHHHHhhhc
Q 045794 194 SYRAMPSDDNKEWVSSTCNYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLRRFLHPK 251 (578)
Q Consensus 194 ~~~v~~~~~~~~~~~~~~~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~~Fl~~~ 251 (578)
++.. ..|.... .++++ ....+++++. .++||+|||||++. .+++.|++..
T Consensus 144 ~d~~-~lP~~a~-~LA~s--~~~~~qa~~~~~~~~g~QfHPE~~~----~~~~~~~~~~ 194 (235)
T PRK08250 144 NDMP-GLTDQAK-VLATS--EGCPRQIVQYSNLVYGFQCHMEFTV----EAVELLIAHS 194 (235)
T ss_pred ccee-cCCCCCE-EEECC--CCCCceEEEeCCCEEEEeecCcCCH----HHHHHHHHhc
Confidence 9864 3444322 22332 2233688884 58999999999965 5677777644
|
|
| >PRK06186 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.3e-19 Score=172.29 Aligned_cols=192 Identities=20% Similarity=0.207 Sum_probs=121.0
Q ss_pred cEEEEEE-CC--CCCHHHHHHHHHHCC------CeEEEeCCc-----cCCCCCCEEEECCCCCchHHHHHHHhhcHHHHH
Q 045794 48 SVVTLLD-YG--AGNVRSVRNAIRHLG------FGIKDVQTP-----EDILNANRLIFPGVGAFAAAMDVLNKTGMAEAL 113 (578)
Q Consensus 48 ~~I~vld-~~--~g~~~~i~~~L~~~G------v~v~~v~~~-----~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i 113 (578)
.+|+++. |- .....++.++|+.+| +++.+++.. ..|.++|||++|||-.. ...+ +....+
T Consensus 2 v~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~----rg~~--Gki~ai 75 (229)
T PRK06186 2 LRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPY----RNDD--GALTAI 75 (229)
T ss_pred cEEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCc----ccHh--HHHHHH
Confidence 3577774 21 124557777887765 355566543 23788999999998321 1122 667889
Q ss_pred HHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCccee---------eeEEEEEccCCcccccC
Q 045794 114 CAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQI---------GWNALQITKDSEILDDV 184 (578)
Q Consensus 114 ~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~---------G~~~i~~~~~~~l~~~l 184 (578)
+.+.+.++|+||||+|||++...+.. .++|+-+...+.|.++ .+.|-+ ..+++.+.+++.+.+.+
T Consensus 76 ~~Are~~iP~LGIClGmQ~avIe~ar----nv~g~~dA~s~E~~~~--~~~pvi~~~~~~~~~~~h~v~l~~~S~l~~iy 149 (229)
T PRK06186 76 RFARENGIPFLGTCGGFQHALLEYAR----NVLGWADAAHAETDPE--GDRPVIAPLSCSLVEKTGDIRLRPGSLIARAY 149 (229)
T ss_pred HHHHHcCCCeEeechhhHHHHHHHHh----hhcCCcCCCcCCCCCC--CCCCEEEECccccccCceEEEECCCCHHHHHh
Confidence 99999999999999999987765432 2344444444444433 111111 12677787777665544
Q ss_pred CCeEE-------EEEeeeeeecCCCCCCcEEEEeecCCceEEEEE---eCCEEEEeeCCcccCc--chHHHHHHHhhhcc
Q 045794 185 GDHHV-------YFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVR---RGNVHAVQFHPEKSGD--VGLSVLRRFLHPKT 252 (578)
Q Consensus 185 ~~~~~-------~~~H~~~v~~~~~~~~~~~~~~~~~d~~iegi~---~~~i~gvQFHPE~~~~--~~~~l~~~Fl~~~~ 252 (578)
..... |++++.+++... ...+..+....|+.+|+++ +.+++|||||||+.+. ....+|+.|++.+.
T Consensus 150 g~~~i~erhrHryeVNs~h~q~i~--~~GL~vsa~s~DG~iEaiE~~~hpf~lGVQwHPE~~s~~~~~~~LF~~Fv~aa~ 227 (229)
T PRK06186 150 GTLEIEEGYHCRYGVNPEFVAALE--SGDLRVTGWDEDGDVRAVELPGHPFFVATLFQPERAALAGRPPPLVRAFLRAAR 227 (229)
T ss_pred CCCeeeeeccccEEECHHHHHHHh--cCCeEEEEEcCCCCEEEEEeCCCCcEEEEeCCCCccCCCCCCCHHHHHHHHHHh
Confidence 42222 334444444443 3345556666678899999 3579999999998543 34589999998875
Q ss_pred C
Q 045794 253 N 253 (578)
Q Consensus 253 ~ 253 (578)
+
T Consensus 228 ~ 228 (229)
T PRK06186 228 A 228 (229)
T ss_pred c
Confidence 3
|
|
| >cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ) | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-18 Score=166.55 Aligned_cols=186 Identities=23% Similarity=0.317 Sum_probs=135.8
Q ss_pred EEEEECC-CCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEec
Q 045794 50 VTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICL 128 (578)
Q Consensus 50 I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGICl 128 (578)
|+|++|+ .+|+.++.++++..|+++++++..+++.++|+||||||.++...+.+++...+.+.|+++++.++||||||+
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~ 80 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPEGLGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICG 80 (194)
T ss_pred CEeecCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECH
Confidence 5788997 899999999999999999999998888899999999998777777676555788999999999999999999
Q ss_pred hHHHHhhhcccC--CC----cCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCC
Q 045794 129 GLQLLFQSSEEN--GP----VNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 129 G~QlLa~a~~e~--~~----~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~ 202 (578)
|+|+|++.+.+. .. ..|+|++|+++.. . ....+|+.......+ ..-..+.+|++|+......+.
T Consensus 81 G~qlL~~~~~~~~g~~~~~~~~glGll~~~~~~-~-----~~~~~g~~~~~~~~~----~~~~~~~G~EfH~~~~~~~~~ 150 (194)
T cd01750 81 GYQMLGKYIVDPEGVEGPGEIEGLGLLDVETEF-G-----PEKTTRRVTGRLDEE----GEGGEVTGYEIHSGRTTLGDG 150 (194)
T ss_pred HHHHhhhhccCCCCcccCCCcccccccceEEEe-c-----CCeEEEEEEEEEccC----CCCCeEEEEcCCCcEEeCCCC
Confidence 999999998532 22 6899999999864 2 123567666554322 011257889999887653222
Q ss_pred CCCcEEEEeecCCceEEEEEeC-CEEEEeeCCcccCcchHHHHHHHh
Q 045794 203 NKEWVSSTCNYGDNFIASVRRG-NVHAVQFHPEKSGDVGLSVLRRFL 248 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~~~-~i~gvQFHPE~~~~~~~~l~~~Fl 248 (578)
...+.....+......+++..+ +++|++.|--+.+ ..+.++|+
T Consensus 151 ~~~~~~~~g~~~~~~~eG~~~~~n~~aty~Hg~f~~---~~~~~~~l 194 (194)
T cd01750 151 ARPLGKGYGNNGEDGTDGAVSGDNVIGTYLHGIFLN---DAFRDALL 194 (194)
T ss_pred CccceeccccCCCCCcCcEEccCcEEEECceeccCC---HHHHHhhC
Confidence 2223211111111123678878 9999999988754 35666664
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ. |
| >COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=158.31 Aligned_cols=189 Identities=25% Similarity=0.385 Sum_probs=131.6
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCC-CeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEE
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLG-FGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGI 126 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~G-v~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGI 126 (578)
++|+|+.+ +|.+....+++++++ +++..++.+++++.+||||||||+++. ....+.+.++.+.|++++..|+|+||.
T Consensus 1 m~IGVLal-QG~v~EH~~~l~~~~~~e~~~Vk~~~dL~~~d~LIiPGGESTT-i~rL~~~~gl~e~l~~~~~~G~Pv~GT 78 (194)
T COG0311 1 MKIGVLAL-QGAVEEHLEALEKAGGAEVVEVKRPEDLEGVDGLIIPGGESTT-IGRLLKRYGLLEPLREFIADGLPVFGT 78 (194)
T ss_pred CeEEEEEe-cccHHHHHHHHHhhcCCceEEEcCHHHhccCcEEEecCccHHH-HHHHHHHcCcHHHHHHHHHcCCceEEe
Confidence 46999999 699999999999995 999999999999999999999998643 223445668999999999999999999
Q ss_pred echHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC---CeEEEEEeeeeeecCCCC
Q 045794 127 CLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG---DHHVYFVHSYRAMPSDDN 203 (578)
Q Consensus 127 ClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~---~~~~~~~H~~~v~~~~~~ 203 (578)
|.|+.+|+..+.++.....||+++.+|.+. .+|.+.-.+..+-.+ +++. .+..-+...-.+.....
T Consensus 79 CAGlIlLakei~~~~~~~~Lg~mdi~V~RN---------AfGRQ~dSFe~~~di-~~~~~~~~~~avFIRAP~I~~vg~- 147 (194)
T COG0311 79 CAGLILLAKEILDGPEQPLLGLLDVTVRRN---------AFGRQVDSFETELDI-EGFGLPFPFPAVFIRAPVIEEVGD- 147 (194)
T ss_pred chhhhhhhhhhcCCCCCcccceEEEEEEcc---------ccccccccceeeEEe-ecccCCCcceEEEEEcceeehhcC-
Confidence 999999998765444567799999998871 123211111110000 0111 12222322222222211
Q ss_pred CCcEEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccCC
Q 045794 204 KEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 204 ~~~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~ 254 (578)
.+.+.+..+ +.+-+++++|++++.||||.+.+. ++.++|++.+...
T Consensus 148 --~V~vLa~l~-~~iVav~qgn~LatsFHPELT~D~--r~Heyf~~~v~~~ 193 (194)
T COG0311 148 --GVEVLATLD-GRIVAVKQGNILATSFHPELTDDT--RLHEYFLDMVLGA 193 (194)
T ss_pred --cceEeeeeC-CEEEEEEeCCEEEEecCccccCCc--cHHHHHHHHhhcc
Confidence 233333333 356788899999999999998644 8899999887653
|
|
| >PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-18 Score=172.43 Aligned_cols=179 Identities=18% Similarity=0.182 Sum_probs=110.1
Q ss_pred HHHHHHHHHCCCeEEEeCCc----cC----CCCCCEEEECCCC-CchHH-------H---HHHHhhcHHHHHHHHHhCCC
Q 045794 61 RSVRNAIRHLGFGIKDVQTP----ED----ILNANRLIFPGVG-AFAAA-------M---DVLNKTGMAEALCAYIEKDR 121 (578)
Q Consensus 61 ~~i~~~L~~~Gv~v~~v~~~----~d----l~~~DGlILpGGg-~~~~~-------~---~~l~~~~l~~~i~~~~~~g~ 121 (578)
..+++++.++|.....++.. +. ++.+|||||+||+ +..+. . ...++....++++.+++.++
T Consensus 29 ~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~ 108 (254)
T PRK11366 29 EKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRI 108 (254)
T ss_pred HHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCC
Confidence 35778999999876666632 11 3669999999985 33211 0 11122234678898999999
Q ss_pred CEEEEechHHHHhhhcccCCCcCCCcccCceeeee--------cCCCCCC----cceeeeEEEEEccCCcccccCC---C
Q 045794 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRF--------DSSNGFR----VPQIGWNALQITKDSEILDDVG---D 186 (578)
Q Consensus 122 PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~--------~~~~~~~----~~~~G~~~i~~~~~~~l~~~l~---~ 186 (578)
||||||+|||+|+.++ | +++.+- .+..... ......+.+.+++++.+...++ .
T Consensus 109 PILGICrG~Qllnva~-------G-----Gtl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~~~~s~l~~i~~~~~~ 176 (254)
T PRK11366 109 PIFAICRGLQELVVAT-------G-----GSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQVEEGGLLSALLPECSN 176 (254)
T ss_pred CEEEECHhHHHHHHHh-------C-----CeEeecccccccccccccCCccccccccCCceEEEECCCCcHHHhcCCCce
Confidence 9999999999999962 3 222210 0000000 0011346777776654433322 2
Q ss_pred eEEEEEeeeeeecCCCCCCcEEEEeecCCceEEEEEeC--C-EEEEeeCCcccCc---chHHHHHHHhhhccCC
Q 045794 187 HHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRG--N-VHAVQFHPEKSGD---VGLSVLRRFLHPKTNI 254 (578)
Q Consensus 187 ~~~~~~H~~~v~~~~~~~~~~~~~~~~~d~~iegi~~~--~-i~gvQFHPE~~~~---~~~~l~~~Fl~~~~~~ 254 (578)
+.+..+|+..+. ..+..+.+.....++.+|+++.. + ++|||||||+... ....||++|++.++..
T Consensus 177 ~~Vns~H~q~V~---~l~~gl~v~A~s~dg~ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~~ 247 (254)
T PRK11366 177 FWVNSLHGQGAK---VVSPRLRVEARSPDGLVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITACQHH 247 (254)
T ss_pred EEeehHHHHHHh---hcccceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHHHH
Confidence 344445554443 33334555555677899999943 3 6999999998643 2368999999988643
|
|
| >KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=151.36 Aligned_cols=193 Identities=17% Similarity=0.263 Sum_probs=131.5
Q ss_pred cccCCCCCcEEEEEECCCCCHHHHHHHH-HHCCCeEEEeCCcc----CC--CCCCEEEE-CCCCCchHHHHHHHhhcHHH
Q 045794 40 SIRATSSDSVVTLLDYGAGNVRSVRNAI-RHLGFGIKDVQTPE----DI--LNANRLIF-PGVGAFAAAMDVLNKTGMAE 111 (578)
Q Consensus 40 ~~~~~~~~~~I~vld~~~g~~~~i~~~L-~~~Gv~v~~v~~~~----dl--~~~DGlIL-pGGg~~~~~~~~l~~~~l~~ 111 (578)
+.+.+..++ |.++|..+++..|++++| .+.|+.+.+++.++ ++ .++++++| ||++.+.+. .+. .+
T Consensus 12 A~~~~~n~p-iv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~Ds--GIs----~~ 84 (223)
T KOG0026|consen 12 ANSSKQNGP-IIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDS--GIS----LQ 84 (223)
T ss_pred hccccccCC-EEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccc--cch----HH
Confidence 333344555 777777789999999999 78899999988764 23 46888887 666654421 111 23
Q ss_pred HHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEE
Q 045794 112 ALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVY 190 (578)
Q Consensus 112 ~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~ 190 (578)
.++++ ...+|+||||+|.|.|..++...-.+.|.+++.+++.+...+ + .....+|++++ ++.+-
T Consensus 85 ~i~~f-~~~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D--------~------~~~~G~f~g~~q~~~V~ 149 (223)
T KOG0026|consen 85 TVLEL-GPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYD--------E------KGEEGLFSGLSNPFIVG 149 (223)
T ss_pred HHHHh-CCCCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccC--------C------ccccccccCCCCCeEEE
Confidence 44443 467999999999999999631111233444454544321110 0 01235788888 78888
Q ss_pred EEeeeeeecCCCCCCcEEEEeecCCceEEEEEeC---CEEEEeeCCccc-CcchHHHHHHHhhhccCC
Q 045794 191 FVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRG---NVHAVQFHPEKS-GDVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 191 ~~H~~~v~~~~~~~~~~~~~~~~~d~~iegi~~~---~i~gvQFHPE~~-~~~~~~l~~~Fl~~~~~~ 254 (578)
.+|+........+..-+.++++..++.+++.+++ .+-|+|||||.. ...+..+++||++.....
T Consensus 150 RYHSLa~~~sSlP~d~L~VTawTEnG~iMgaRHkKY~~ieGVQfHPESIlteeGk~~irNflni~~~t 217 (223)
T KOG0026|consen 150 RYHSLVIEKDSFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIVEKK 217 (223)
T ss_pred eeeeeeeecccCCccceeeeEeccCcEEEeeeccccccccceeecchhhhhhhhHHHHHHHHHhcccc
Confidence 9999877655444456677888888999999964 588999999985 447889999999987653
|
|
| >PRK07567 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-18 Score=170.04 Aligned_cols=164 Identities=21% Similarity=0.283 Sum_probs=109.8
Q ss_pred HHHHHHHHHCCCe---EEEeCC--c----cCCCCCCEEEECCCCCchHH-----HHHHHh--hcHHHHHHHHHhCCCCEE
Q 045794 61 RSVRNAIRHLGFG---IKDVQT--P----EDILNANRLIFPGVGAFAAA-----MDVLNK--TGMAEALCAYIEKDRPFL 124 (578)
Q Consensus 61 ~~i~~~L~~~Gv~---v~~v~~--~----~dl~~~DGlILpGGg~~~~~-----~~~l~~--~~l~~~i~~~~~~g~PIl 124 (578)
..+.+++++.|.. +.+++. . .++.+||||||+||.....+ ..|+.. ..+.+.++.+++.++|||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvL 97 (242)
T PRK07567 18 AEYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFL 97 (242)
T ss_pred chHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 4667788888854 444322 1 25678999999998532221 345431 123456666668999999
Q ss_pred EEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEcc---CCcccccCC-CeEEEEEeeeeeecC
Q 045794 125 GICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK---DSEILDDVG-DHHVYFVHSYRAMPS 200 (578)
Q Consensus 125 GIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~---~~~l~~~l~-~~~~~~~H~~~v~~~ 200 (578)
|||+|||+|+.+ .| +++.+ ...+++|+.++.++. .++++..++ .+.++++|++.+...
T Consensus 98 GIC~G~Qlla~a-------~G-----G~V~~------~~g~e~G~~~v~l~~~g~~~~l~~~~~~~~~~~~~H~d~V~~l 159 (242)
T PRK07567 98 GACYGVGTLGHH-------QG-----GVVDR------TYGEPVGAVTVSLTDAGRADPLLAGLPDTFTAFVGHKEAVSAL 159 (242)
T ss_pred EEchhHHHHHHH-------cC-----CEEec------CCCCcCccEEEEECCccCCChhhcCCCCceEEEeehhhhhhhC
Confidence 999999999995 23 66654 122578999998875 356787776 689999999987655
Q ss_pred CCCCCcEEEEeecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 201 DDNKEWVSSTCNYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 201 ~~~~~~~~~~~~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
+.... +.+++ .+..+++++. +++||+|||||++. .++..|+.
T Consensus 160 p~~~~-vlA~s--~~~~vqa~~~~~~~~gvQfHPE~~~----~~~~~~~~ 202 (242)
T PRK07567 160 PPGAV-LLATS--PTCPVQMFRVGENVYATQFHPELDA----DGLKTRID 202 (242)
T ss_pred CCCCE-EEEeC--CCCCEEEEEeCCCEEEEEeCCcCCH----HHHHHHHH
Confidence 54322 22332 3445789985 58999999999976 34445543
|
|
| >PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.9e-18 Score=158.13 Aligned_cols=186 Identities=27% Similarity=0.381 Sum_probs=118.0
Q ss_pred EEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCC-CCEEEEechH
Q 045794 52 LLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKD-RPFLGICLGL 130 (578)
Q Consensus 52 vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g-~PIlGIClG~ 130 (578)
|+.+ .|.+....+.|+++|++...++.+++|.++||||||||+++. ....+...++.+.|++++..+ +||||+|.|+
T Consensus 1 VLAL-QG~~~EH~~~l~~lg~~~~~Vr~~~dL~~~dgLIiPGGESTt-i~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGl 78 (188)
T PF01174_consen 1 VLAL-QGAFREHIRMLERLGAEVVEVRTPEDLEGLDGLIIPGGESTT-IGKLLRRYGLFEPLREFIRSGSKPVWGTCAGL 78 (188)
T ss_dssp EESS-SSSHHHHHHHHHHTTSEEEEE-SGGGGTT-SEEEE-SS-HHH-HHHHHHHTTHHHHHHHHHHTT--EEEEETHHH
T ss_pred CCcc-ccChHHHHHHHHHcCCCeEEeCCHHHHccCCEEEECCCcHHH-HHHHHHHcCCHHHHHHHHHcCCCceeehhHHH
Confidence 4555 588999999999999999999999999999999999998643 223445678999999999998 9999999999
Q ss_pred HHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcEEEE
Q 045794 131 QLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSST 210 (578)
Q Consensus 131 QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~~~~ 210 (578)
.|||..+... ....+|+++.+|.+... +.+.-.+ ...+.+..-. .++.+.+..--.+.....+ ..+...
T Consensus 79 IlLa~~v~~~-~q~~Lg~ldi~V~RNaf--GrQ~~SF-e~~l~i~~~~------~~~~avFIRAP~I~~v~~~-~~v~vl 147 (188)
T PF01174_consen 79 ILLAKEVEGQ-GQPLLGLLDITVRRNAF--GRQLDSF-EADLDIPGLG------EPFPAVFIRAPVIEEVGSP-EGVEVL 147 (188)
T ss_dssp HHHEEEECSS-CCTSS--EEEEEETTTT--CSSSCEE-EEEEEETTTE------SEEEEEESS--EEEEE--T-TTEEEE
T ss_pred HHhhhhhhhc-ccccccceeEEEEcccc--ccchhcE-EEEEEeecCC------CcEEEEEcCCcEEEEeecc-cccccc
Confidence 9999976443 34568899999887111 0111111 1122221110 1233333222222222211 223333
Q ss_pred eecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 211 CNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 211 ~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
...+ +.+-+++++|++++-||||.+.+ +.++.++|++++.
T Consensus 148 a~~~-g~iVav~qgn~latsFHPELT~D-~~r~H~yFl~~v~ 187 (188)
T PF01174_consen 148 AELD-GKIVAVRQGNILATSFHPELTDD-DTRIHEYFLEMVV 187 (188)
T ss_dssp EEET-TEEEEEEETTEEEESS-GGGSST-HCHHHHHHHHHHC
T ss_pred cccc-cceEEEEecCEEEEEeCCcccCc-hhHHHHHHHHHhh
Confidence 3333 35668889999999999999875 2489999998864
|
The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A. |
| >cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-17 Score=159.53 Aligned_cols=181 Identities=19% Similarity=0.184 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHCCCeEEEeCCc--cCCCCCCEEEECCCCCchHHHHHHHh-hcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 59 NVRSVRNAIRHLGFGIKDVQTP--EDILNANRLIFPGVGAFAAAMDVLNK-TGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 59 ~~~~i~~~L~~~Gv~v~~v~~~--~dl~~~DGlILpGGg~~~~~~~~l~~-~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
++.+..++|+++|++++++++. +++.++|+||||||.... .+..+.. .++.+.|++++++++||+|||.|+|||++
T Consensus 12 ~y~e~~~~l~~~G~~v~~~s~~~~~~l~~~D~lilPGG~~~~-~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~ 90 (198)
T cd03130 12 YYPENLELLEAAGAELVPFSPLKDEELPDADGLYLGGGYPEL-FAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGE 90 (198)
T ss_pred ccHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCchHH-HHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHH
Confidence 4556778999999999999884 567779999999975432 2455543 46889999999999999999999999999
Q ss_pred hcccC--CCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcEEEEeec
Q 045794 136 SSEEN--GPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNY 213 (578)
Q Consensus 136 a~~e~--~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~~~~~~~ 213 (578)
.+.+. ....|+|++|+++.++. + .++||..++...++++...-..+.+|++|...+...+............
T Consensus 91 ~~~d~~g~~~~glGll~~~~~~~~-----~-~~~g~~~~~~~~~~~~~~~g~~v~G~E~H~g~t~~~~~~~~~~~~~~~~ 164 (198)
T cd03130 91 SLDDEEGQSYPMAGVLPGDARMTK-----R-LGLGYREAEALGDTLLGKKGTTLRGHEFHYSRLEPPPEPDFAATVRRGR 164 (198)
T ss_pred HhhccCCCEeccccccceeeEEcC-----C-CcccCEEEEeecCccccCCCCEEEEEeccCcEeecCCCcceEEEeccCC
Confidence 98763 36789999999998632 2 3899998877655554332225799999988765321111111111111
Q ss_pred C-CceEEEEEeCCEEEEeeCCcccCcchHHHHHHHh
Q 045794 214 G-DNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFL 248 (578)
Q Consensus 214 ~-d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl 248 (578)
+ ++..+++..++++|+++|--+.+ ...+.++|+
T Consensus 165 ~~~~~~dG~~~~nv~gtY~Hg~f~~--n~~~~~~~~ 198 (198)
T cd03130 165 GIDGGEDGYVYGNVLASYLHLHWAS--NPDLAERFV 198 (198)
T ss_pred CCCCcccEEEECCEEEEEeeeeccc--CHHHHHHhC
Confidence 2 12236777899999999987754 335677664
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB. |
| >TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=164.72 Aligned_cols=187 Identities=22% Similarity=0.382 Sum_probs=120.7
Q ss_pred cEEEEEECCCC-CHHHHHHHHHHCCCeEEEeCCcc-CCCCCCEEEECCCCCchHHHH--HH-HhhcHHHHHHHHHhCCCC
Q 045794 48 SVVTLLDYGAG-NVRSVRNAIRHLGFGIKDVQTPE-DILNANRLIFPGVGAFAAAMD--VL-NKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 48 ~~I~vld~~~g-~~~~i~~~L~~~Gv~v~~v~~~~-dl~~~DGlILpGGg~~~~~~~--~l-~~~~l~~~i~~~~~~g~P 122 (578)
++|+|++++-. .-.++.++|+++|+++..+...+ +++++|+||||||.++.+... .+ ....+.++++++.+.++|
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~~l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~p 80 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDGSLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVP 80 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCCCCCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCE
Confidence 46999999744 45678999999999988775543 478999999999864432211 11 112356788899999999
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCccee--eeEEEEEcc-CCcccccCC-CeEEEE--Eeeee
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQI--GWNALQITK-DSEILDDVG-DHHVYF--VHSYR 196 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~--G~~~i~~~~-~~~l~~~l~-~~~~~~--~H~~~ 196 (578)
|+|||.|+|+|+. +|++++.+.+ ....++ +|..+++.. .+++++.++ ....+. .|...
T Consensus 81 vlgIC~G~QlLa~----------~GlL~G~l~~------n~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~pi~H~eG 144 (227)
T TIGR01737 81 VLGICNGFQILVE----------AGLLPGALLP------NDSLRFICRWVYLRVENADTIFTKNYKKGEVIRIPIAHGEG 144 (227)
T ss_pred EEEECHHHHHHHH----------cCCCCCceee------cCCCceEEEeEEEEECCCCChhhccCCCCCEEEEEeEcCCc
Confidence 9999999999998 3456666544 112334 455555543 356776666 222222 45444
Q ss_pred eecCCC-------CCCcEEEEeec----------CC---ceEEEEEe--CCEEEEeeCCccc------CcchHHHHHHHh
Q 045794 197 AMPSDD-------NKEWVSSTCNY----------GD---NFIASVRR--GNVHAVQFHPEKS------GDVGLSVLRRFL 248 (578)
Q Consensus 197 v~~~~~-------~~~~~~~~~~~----------~d---~~iegi~~--~~i~gvQFHPE~~------~~~~~~l~~~Fl 248 (578)
....+. ....+...... .+ ..++++.+ ++++|+|||||.. +.++..||++|+
T Consensus 145 ~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~~~g~~~HpE~~~~~~~~~~~g~~~~~~~~ 224 (227)
T TIGR01737 145 RYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGNVLGMMPHPERASEKLLGGDDGLKLFESLV 224 (227)
T ss_pred CeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCCEEEEecCchhhcccccCCcccHHHHHHHH
Confidence 321110 11122222211 22 34667774 6999999999986 448999999998
Q ss_pred hh
Q 045794 249 HP 250 (578)
Q Consensus 249 ~~ 250 (578)
+.
T Consensus 225 ~~ 226 (227)
T TIGR01737 225 EW 226 (227)
T ss_pred hh
Confidence 64
|
In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea. |
| >cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.1e-18 Score=162.28 Aligned_cols=145 Identities=23% Similarity=0.245 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHCCCeEEEeCCcc-------CCCCCCEEEECCCCCchHHH------H------HHHhhcHHHHHHHHHhC
Q 045794 59 NVRSVRNAIRHLGFGIKDVQTPE-------DILNANRLIFPGVGAFAAAM------D------VLNKTGMAEALCAYIEK 119 (578)
Q Consensus 59 ~~~~i~~~L~~~Gv~v~~v~~~~-------dl~~~DGlILpGGg~~~~~~------~------~l~~~~l~~~i~~~~~~ 119 (578)
...++.++|+.+|+.+.+++... .+.++||||||||++..+.. . ..+.....+.++.+++.
T Consensus 20 ~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 99 (189)
T cd01745 20 LNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALER 99 (189)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHC
Confidence 45688999999999988887653 24789999999997654321 0 01111235778888889
Q ss_pred CCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeec
Q 045794 120 DRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMP 199 (578)
Q Consensus 120 g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~ 199 (578)
++|+||||+|||+|+.+ .| +++.+ . + .++.+|++.+..
T Consensus 100 ~~PilgiC~G~Q~l~~~-------~G-----g~v~~------~--~----------------------~v~~~H~~~v~~ 137 (189)
T cd01745 100 GKPILGICRGMQLLNVA-------LG-----GTLYQ------D--I----------------------RVNSLHHQAIKR 137 (189)
T ss_pred CCCEEEEcchHHHHHHH-------hC-----CeEEc------C--C----------------------ceechHHHHHhh
Confidence 99999999999999995 23 55432 0 0 235678877654
Q ss_pred CCCCCCcEEEEeecCCceEEEEEe---CCEEEEeeCCcccC---cchHHHHHHHh
Q 045794 200 SDDNKEWVSSTCNYGDNFIASVRR---GNVHAVQFHPEKSG---DVGLSVLRRFL 248 (578)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~iegi~~---~~i~gvQFHPE~~~---~~~~~l~~~Fl 248 (578)
.+. .+.......++.+++++. .+++|+|||||... .++.+||++|+
T Consensus 138 ~~~---~~~vla~~~d~~vea~~~~~~~~~~gvQfHPE~~~~~~~~~~~if~~f~ 189 (189)
T cd01745 138 LAD---GLRVEARAPDGVIEAIESPDRPFVLGVQWHPEWLADTDPDSLKLFEAFV 189 (189)
T ss_pred cCC---CCEEEEECCCCcEEEEEeCCCCeEEEEecCCCcCcccCchHhHHHHHhC
Confidence 432 223333345678999995 38999999999965 37889999985
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=99.74 E-value=4.8e-18 Score=159.60 Aligned_cols=169 Identities=22% Similarity=0.298 Sum_probs=121.1
Q ss_pred HHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHh
Q 045794 343 LQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRV 422 (578)
Q Consensus 343 ~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (578)
.+.|++|.+.+++|| +|-=-+.++|.++|||||+++++++.++|||.|.+......+| +.+ .++++++.++
T Consensus 21 ~~dI~aik~~v~lPI-IGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp-~~l-------~~li~~i~~~ 91 (192)
T PF04131_consen 21 VEDIRAIKKAVDLPI-IGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP-ETL-------EELIREIKEK 91 (192)
T ss_dssp HHHHHHHHTTB-S-E-EEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S-S-H-------HHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCE-EEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC-cCH-------HHHHHHHHHh
Confidence 577888988999999 4444477889999999999999999999999999988777765 333 5899999988
Q ss_pred CCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe--cc
Q 045794 423 YGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN--CI 500 (578)
Q Consensus 423 ~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t--di 500 (578)
| .-++. | ++.+|-+..+.++|++.|--| ..
T Consensus 92 ~--~l~MA--D--------------------------------------------ist~ee~~~A~~~G~D~I~TTLsGY 123 (192)
T PF04131_consen 92 Y--QLVMA--D--------------------------------------------ISTLEEAINAAELGFDIIGTTLSGY 123 (192)
T ss_dssp T--SEEEE--E---------------------------------------------SSHHHHHHHHHTT-SEEE-TTTTS
T ss_pred C--cEEee--e--------------------------------------------cCCHHHHHHHHHcCCCEEEcccccC
Confidence 8 43443 3 344788999999999988744 22
Q ss_pred CCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 501 DCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 501 ~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+.+-...+||+++++++++. ++|||+.|++.++++++++++ .||++|+||+|+....+..+.+.+.++
T Consensus 124 T~~t~~~~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~-~GA~aVVVGsAITrP~~It~~F~~ai~ 191 (192)
T PF04131_consen 124 TPYTKGDGPDFELVRELVQA-DVPVIAEGRIHTPEQAAKALE-LGAHAVVVGSAITRPQEITKRFVDAIK 191 (192)
T ss_dssp STTSTTSSHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHH-TT-SEEEE-HHHH-HHHHHHHHHHHCH
T ss_pred CCCCCCCCCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHh-cCCeEEEECcccCCHHHHHHHHHHHHh
Confidence 33333389999999999986 899999999999999999996 999999999999876665555555544
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-17 Score=162.36 Aligned_cols=162 Identities=24% Similarity=0.274 Sum_probs=94.3
Q ss_pred HHHHHHHHHCCCeEEEeCCccC-------CCCCCEEEECCCC-CchHH------------HHHHHhhcHHHHHHHHHhCC
Q 045794 61 RSVRNAIRHLGFGIKDVQTPED-------ILNANRLIFPGVG-AFAAA------------MDVLNKTGMAEALCAYIEKD 120 (578)
Q Consensus 61 ~~i~~~L~~~Gv~v~~v~~~~d-------l~~~DGlILpGGg-~~~~~------------~~~l~~~~l~~~i~~~~~~g 120 (578)
.+++++++++|..+..++...+ ++.+|||+||||+ +-.+. .+..++.-...+++.+.+.+
T Consensus 27 ~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~ 106 (217)
T PF07722_consen 27 ASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRG 106 (217)
T ss_dssp HHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcC
Confidence 4789999999999988877522 5789999999998 33211 11112222356677788889
Q ss_pred CCEEEEechHHHHhhhcccCCCcCCCcccC-cee--eeecCCCCCCcceeeeEEEEEccCCcccccCC--CeEEEEEeee
Q 045794 121 RPFLGICLGLQLLFQSSEENGPVNGLGLIP-GVV--GRFDSSNGFRVPQIGWNALQITKDSEILDDVG--DHHVYFVHSY 195 (578)
Q Consensus 121 ~PIlGIClG~QlLa~a~~e~~~~~Glgl~~-~~v--~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~--~~~~~~~H~~ 195 (578)
+||||||+|||+|+.++ |-.+.. ... ...... .......++.+.+.+++.+.+.+. ...+..+|+.
T Consensus 107 ~PilGICrG~Q~lnv~~-------GGtl~q~~~~~~~~~~~~--~~~~~~~~h~v~i~~~s~l~~~~~~~~~~vns~Hhq 177 (217)
T PF07722_consen 107 KPILGICRGMQLLNVAF-------GGTLYQDIPDQPGFPDHR--QHPQDFPSHPVRIVPGSLLAKILGSEEIEVNSFHHQ 177 (217)
T ss_dssp --EEEETHHHHHHHHHC-------CSSEESCCCCSS-EEECE--E-S-TS--EEEEEETTSTCCCTSHHCTEEEEEEECE
T ss_pred CCEEEEcHHHHHHHHHh-------CCCceeecccCcCccccc--ccccccccccceeccCchHHHHhCcCcceeecchhh
Confidence 99999999999999963 211100 000 000000 001134568888887777665543 5677777777
Q ss_pred eeecCCCCCCcEEEEeecCCceEEEEE---eC-CEEEEeeCCc
Q 045794 196 RAMPSDDNKEWVSSTCNYGDNFIASVR---RG-NVHAVQFHPE 234 (578)
Q Consensus 196 ~v~~~~~~~~~~~~~~~~~d~~iegi~---~~-~i~gvQFHPE 234 (578)
.+... +..+.+.+...|+.+|+++ ++ +++|+|||||
T Consensus 178 ~v~~l---~~~l~v~A~s~Dg~iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 178 AVKPL---GEGLRVTARSPDGVIEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp EECCH---HCCEEEEEEECTSSEEEEEECCESS-EEEESS-CC
T ss_pred hhhcc---CCCceEEEEecCCcEEEEEEcCCCCCEEEEEeCCC
Confidence 66543 3345555555588999998 34 7999999998
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D. |
| >KOG1622 consensus GMP synthase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-17 Score=170.91 Aligned_cols=260 Identities=20% Similarity=0.273 Sum_probs=168.3
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC---C--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED---I--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d---l--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
-.|+|+|+|+.+-+-|.|.+++.-+..+.++.... + ..+-||||+||+.+..+.+... +...+ .+-++|
T Consensus 17 d~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~t~~~~i~~~~~rgiIiSGGP~SVya~dAP~---~dp~i---f~~~vp 90 (552)
T KOG1622|consen 17 DTILILDFGAQYGKVIDRRVRELNVQSEILPLTTPAKTITEYGPRGIIISGGPNSVYAEDAPS---FDPAI---FELGVP 90 (552)
T ss_pred ceEEEEeccchhhHHHHHHHHHHhhhhhhccCCChhhhhhcCCceEEEEeCCCCccccCcCCC---CChhH---hccCCc
Confidence 45999999999999999999999987777765432 3 4689999999976554332221 11222 234799
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-Ce--EEEEEeeeeeec
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DH--HVYFVHSYRAMP 199 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~--~~~~~H~~~v~~ 199 (578)
+||||.|||+|+.. .| +.|.+ ...++.|-.++.+.....+|+++. .. .++..|++.+..
T Consensus 91 vLGICYGmQ~i~~~-------~G-----g~V~~------~~~RE~G~~eI~v~~~~~lF~~~~~~~~~~VlltHgdsl~~ 152 (552)
T KOG1622|consen 91 VLGICYGMQLINKL-------NG-----GTVVK------GMVREDGEDEIEVDDSVDLFSGLHKTEFMTVLLTHGDSLSK 152 (552)
T ss_pred ceeehhHHHHHHHH-------hC-----Ccccc------ccccCCCCceEEcCchhhhhhhhcccceeeeeeccccchhh
Confidence 99999999999993 23 34433 123456777777776777887765 22 477889988776
Q ss_pred CCCCCCcEEEEeecCCceEEEEE--eCCEEEEeeCCcccCc-chHHHHHHHh-hhccCCCCCCCcccccccceeEEEeee
Q 045794 200 SDDNKEWVSSTCNYGDNFIASVR--RGNVHAVQFHPEKSGD-VGLSVLRRFL-HPKTNIPKKPTEGKALKLAKRVIACLD 275 (578)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~iegi~--~~~i~gvQFHPE~~~~-~~~~l~~~Fl-~~~~~~~~~~~~~~~~~~~~riIp~iD 275 (578)
.+.. +.+.....+..+.++. .+++||+|||||.+.+ .+..++++|+ +.+.+...+.... .+... |-.|-
T Consensus 153 v~~g---~kv~a~s~n~~va~i~~e~kkiyglqfhpEV~~t~~g~~ll~nFl~~vc~~~~n~tmen-re~e~---I~~i~ 225 (552)
T KOG1622|consen 153 VPEG---FKVVAFSGNKPVAGILNELKKIYGLQFHPEVTLTPNGKELLKNFLFDVCGCSGNFTMEN-REEEC---INEIR 225 (552)
T ss_pred cccc---ceeEEeecCcceeeehhhhhhhhcCCCCCcccccCchhHHHHHHHHHHcCCccCcchhh-hhHHH---HHHHH
Confidence 6543 3344444444445555 4699999999999765 7899999999 7777776643221 11111 10010
Q ss_pred EeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEeccc-CCCCCCCCchhHHHHHHHhhhc
Q 045794 276 VRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITG-FRDFPLGDLPMLQVLRLTSENV 353 (578)
Q Consensus 276 l~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~-~~~~~~~~~~~~~~i~~i~~~~ 353 (578)
=.-. +-+|+ ++.|.- ++-+..+-..+..|.+++|-+-.|. .+ +..+.+.+++-....
T Consensus 226 k~vG-~~~Vl~~vSGgv---------------dStV~a~Ll~~alg~~R~~ai~vdNG~m-----rk~Ea~~V~~tl~~l 284 (552)
T KOG1622|consen 226 KWVG-DYKVLVAVSGGV---------------DSTVCAALLRRALGPDRVHAIHVDNGFM-----RKKEAEQVEKTLVYL 284 (552)
T ss_pred HHhc-ccceEEEecCCc---------------hHHHHHHHHHHhhCCCceEEEEecccch-----hhhHHHHHHHHHHHc
Confidence 0000 12233 666643 3555666666778999999998885 32 233455566655558
Q ss_pred cccEEE
Q 045794 354 FVPLTV 359 (578)
Q Consensus 354 ~~pi~~ 359 (578)
++||++
T Consensus 285 gi~i~v 290 (552)
T KOG1622|consen 285 GIPITV 290 (552)
T ss_pred CCceEE
Confidence 888874
|
|
| >TIGR00337 PyrG CTP synthase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=171.33 Aligned_cols=195 Identities=21% Similarity=0.255 Sum_probs=120.0
Q ss_pred CCCCcEEEEEECCC---CCHHHHHHHHHHCCC------eEEEeCCcc-------CCCCCCEEEECCCCCchHHHHHHHhh
Q 045794 44 TSSDSVVTLLDYGA---GNVRSVRNAIRHLGF------GIKDVQTPE-------DILNANRLIFPGVGAFAAAMDVLNKT 107 (578)
Q Consensus 44 ~~~~~~I~vld~~~---g~~~~i~~~L~~~Gv------~v~~v~~~~-------dl~~~DGlILpGGg~~~~~~~~l~~~ 107 (578)
+...++|+++.=.. ....++.++|+.+|+ .+.+++..+ .|.++|||++|||..... . .
T Consensus 286 ~~~~v~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~----~--~ 359 (525)
T TIGR00337 286 PKHEVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERG----V--E 359 (525)
T ss_pred CCCCcEEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChh----h--c
Confidence 34568899985221 244689999999996 223333321 156799999999863221 1 2
Q ss_pred cHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCC----------------CCCCcceeeeEE
Q 045794 108 GMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSS----------------NGFRVPQIGWNA 171 (578)
Q Consensus 108 ~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~----------------~~~~~~~~G~~~ 171 (578)
+....++.+.+.++|+||||+|||+|+.++..+ -+|+.++....|.+. .......+|.++
T Consensus 360 g~i~ai~~a~e~~iP~LGIClG~Qll~i~~grn----v~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~ 435 (525)
T TIGR00337 360 GKILAIKYARENNIPFLGICLGMQLAVIEFARN----VLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYP 435 (525)
T ss_pred ChHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHH----hcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceE
Confidence 455678888889999999999999999975321 011111111111110 001124568889
Q ss_pred EEEccCCcccccCCC--eEEEEEeeeeeec-----CCCCCCcEEEEeecCC-ceEEEEEe---CCEEEEeeCCcccCc--
Q 045794 172 LQITKDSEILDDVGD--HHVYFVHSYRAMP-----SDDNKEWVSSTCNYGD-NFIASVRR---GNVHAVQFHPEKSGD-- 238 (578)
Q Consensus 172 i~~~~~~~l~~~l~~--~~~~~~H~~~v~~-----~~~~~~~~~~~~~~~d-~~iegi~~---~~i~gvQFHPE~~~~-- 238 (578)
+.+.+++.+.+.+.. ...-+.|+|.+.+ ... ..+..+....| +.+|+++. .+++|||||||+.+.
T Consensus 436 v~i~~gS~L~~iyG~~~i~erhrHry~VNs~h~q~l~~--~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~ 513 (525)
T TIGR00337 436 CILKPGTLAFKLYGKEEVYERHRHRYEVNNEYREQLEN--KGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPN 513 (525)
T ss_pred EEECCCChHHHHhCCCceeecccceEEECHHHHHhhhh--CCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCC
Confidence 998888777665542 2223455555543 222 23444444445 68999993 346699999999643
Q ss_pred chHHHHHHHhhh
Q 045794 239 VGLSVLRRFLHP 250 (578)
Q Consensus 239 ~~~~l~~~Fl~~ 250 (578)
+...+|+.|+++
T Consensus 514 ~~~~LF~~FV~A 525 (525)
T TIGR00337 514 RPHPLFLGFVKA 525 (525)
T ss_pred chhHHHHHHHhC
Confidence 557899999863
|
CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7). |
| >PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-16 Score=154.58 Aligned_cols=186 Identities=24% Similarity=0.382 Sum_probs=120.8
Q ss_pred cEEEEEECCCCC-HHHHHHHHH-HCCCeEEEeCC-ccCCCCCCEEEECCCCCchHHHH---HHHhhcHHHHHHHHHhCCC
Q 045794 48 SVVTLLDYGAGN-VRSVRNAIR-HLGFGIKDVQT-PEDILNANRLIFPGVGAFAAAMD---VLNKTGMAEALCAYIEKDR 121 (578)
Q Consensus 48 ~~I~vld~~~g~-~~~i~~~L~-~~Gv~v~~v~~-~~dl~~~DGlILpGGg~~~~~~~---~l~~~~l~~~i~~~~~~g~ 121 (578)
++|+|+.++-.| -.++.++|+ ..|+++..+.. ..+++++|+|+||||.++..... ......+.++++++.++++
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~~~l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~ 80 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKETDLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGK 80 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCcCCCCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCC
Confidence 369999998555 466899999 89998877743 35788999999999865432211 1111246788889999999
Q ss_pred CEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCccee--eeEEEEEcc-CCcccccCC-Ce--EEEEEeee
Q 045794 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQI--GWNALQITK-DSEILDDVG-DH--HVYFVHSY 195 (578)
Q Consensus 122 PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~--G~~~i~~~~-~~~l~~~l~-~~--~~~~~H~~ 195 (578)
|++|||.|+|+|+. +|++++++.+ ....++ +|..+++.. ++++++.+. .. .+.-.|+.
T Consensus 81 ~ilgIC~G~qlLa~----------~GLL~g~l~~------n~~~~~~~~~v~v~i~~~~~~~~~~~~~g~~~~~~~aH~~ 144 (219)
T PRK03619 81 PVLGICNGFQILTE----------AGLLPGALTR------NASLKFICRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGE 144 (219)
T ss_pred EEEEECHHHHHHHH----------cCCCCCeEEE------cCCCcEEEEEEEEEECCCCChhhcCCCCCCEEEEEEEcCc
Confidence 99999999999999 4677888654 122344 566666654 467776663 22 22224443
Q ss_pred e---eecCC----CCCCcEEE-Ee-ecCCc---eEEEEE--eCCEEEEeeCCcccC------cchHHHHHHHhh
Q 045794 196 R---AMPSD----DNKEWVSS-TC-NYGDN---FIASVR--RGNVHAVQFHPEKSG------DVGLSVLRRFLH 249 (578)
Q Consensus 196 ~---v~~~~----~~~~~~~~-~~-~~~d~---~iegi~--~~~i~gvQFHPE~~~------~~~~~l~~~Fl~ 249 (578)
+ +.... ........ .. ...++ -+.++. +++++|+|||||+.. .++..||++|++
T Consensus 145 ~r~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i~~~~~~~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 145 GNYYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGIVNEKGNVLGMMPHPERAVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred ccEEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhcccCCCCCCEEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence 3 22100 01222222 22 11233 244554 459999999999962 478999999985
|
|
| >PRK05380 pyrG CTP synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=170.11 Aligned_cols=199 Identities=23% Similarity=0.308 Sum_probs=121.3
Q ss_pred CCCCcEEEEEECCC---CCHHHHHHHHHHCCC------eEEEeCCc--------cCCCCCCEEEECCCCCchHHHHHHHh
Q 045794 44 TSSDSVVTLLDYGA---GNVRSVRNAIRHLGF------GIKDVQTP--------EDILNANRLIFPGVGAFAAAMDVLNK 106 (578)
Q Consensus 44 ~~~~~~I~vld~~~---g~~~~i~~~L~~~Gv------~v~~v~~~--------~dl~~~DGlILpGGg~~~~~~~~l~~ 106 (578)
+....+|+++.=.. ....++.++|+.+|. ++.+++.. +.+.++|||++|||.... ...
T Consensus 285 ~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~----~~~- 359 (533)
T PRK05380 285 PKGEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGER----GIE- 359 (533)
T ss_pred CCCceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCcc----ccc-
Confidence 34567899985222 245678888888763 34455432 237889999999984221 111
Q ss_pred hcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecC------------CCC----CCcceeeeE
Q 045794 107 TGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDS------------SNG----FRVPQIGWN 170 (578)
Q Consensus 107 ~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~------------~~~----~~~~~~G~~ 170 (578)
+....++.+.+.++|+||||+|||+|+.++... . +|+.++....|++ ... .....+|.+
T Consensus 360 -g~i~~i~~a~e~~iPiLGIClGmQll~va~Ggn--v--~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h 434 (533)
T PRK05380 360 -GKILAIRYARENNIPFLGICLGMQLAVIEFARN--V--LGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAY 434 (533)
T ss_pred -cHHHHHHHHHHCCCcEEEEchHHHHHHHHhccc--c--cCcccCcccccCCCCCCCeEeeccccccccccCCcccccce
Confidence 456788888899999999999999999974211 0 1122221111111 000 012245678
Q ss_pred EEEEccCCcccccCCCeEEE--EEeeeee-----ecCCCCCCcEEEEeecCC-ceEEEEEe---CCEEEEeeCCcccCc-
Q 045794 171 ALQITKDSEILDDVGDHHVY--FVHSYRA-----MPSDDNKEWVSSTCNYGD-NFIASVRR---GNVHAVQFHPEKSGD- 238 (578)
Q Consensus 171 ~i~~~~~~~l~~~l~~~~~~--~~H~~~v-----~~~~~~~~~~~~~~~~~d-~~iegi~~---~~i~gvQFHPE~~~~- 238 (578)
++.+.+++.+.+.+....+. +.|.|.+ +..... .+..+..+.+ +.+|+++. .+++|+|||||+.+.
T Consensus 435 ~v~i~~gS~l~~iyg~~~i~ErhrHryeVNs~h~qal~~~--GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p 512 (533)
T PRK05380 435 PCKLKPGTLAAEIYGKEEIYERHRHRYEVNNKYREQLEKA--GLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRP 512 (533)
T ss_pred eEEECCCChHHHHhCCCceeeecccceecCHHHHHHHhhc--CeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCC
Confidence 88888887766555432222 2333333 333222 2344444434 58999983 356799999999653
Q ss_pred -chHHHHHHHhhhccCC
Q 045794 239 -VGLSVLRRFLHPKTNI 254 (578)
Q Consensus 239 -~~~~l~~~Fl~~~~~~ 254 (578)
+...+|+.|++++...
T Consensus 513 ~~~~pLF~~FV~Aa~~~ 529 (533)
T PRK05380 513 RRPHPLFAGFVKAALEN 529 (533)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 5678999999988653
|
|
| >cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=162.79 Aligned_cols=182 Identities=19% Similarity=0.202 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHCCCeEEEeCCc---cC----CCCCCEEEECCCCCchHHHHHHH-hhcHHHHHHHHHhCC--CCEEEEec
Q 045794 59 NVRSVRNAIRHLGFGIKDVQTP---ED----ILNANRLIFPGVGAFAAAMDVLN-KTGMAEALCAYIEKD--RPFLGICL 128 (578)
Q Consensus 59 ~~~~i~~~L~~~Gv~v~~v~~~---~d----l~~~DGlILpGGg~~~~~~~~l~-~~~l~~~i~~~~~~g--~PIlGICl 128 (578)
...+++++++++|++|..+..+ ++ +..+|||++|||+.......+.+ ...+.+.+.+..++| +|+||||+
T Consensus 21 i~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiCl 100 (273)
T cd01747 21 IAASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCL 100 (273)
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcH
Confidence 3346899999999987665433 22 67899999999863332222332 112333333333333 89999999
Q ss_pred hHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEcc---CCcccccCC---------CeEEEEEeeee
Q 045794 129 GLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK---DSEILDDVG---------DHHVYFVHSYR 196 (578)
Q Consensus 129 G~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~---~~~l~~~l~---------~~~~~~~H~~~ 196 (578)
|||+|+.++ | +++..... ...+-...++.++. .+++|+.++ ...++++|+++
T Consensus 101 G~QlL~~~~-------g-----g~~~~~~~----~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~ 164 (273)
T cd01747 101 GFELLTYLT-------S-----GETLLLEA----TEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYG 164 (273)
T ss_pred HHHHHHHHh-------C-----CCccccCC----CccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccc
Confidence 999999953 2 11110000 00112235565554 356776664 24678999998
Q ss_pred eecCCCC------CC-cEEEEeec--CCceEEEEEeC--CEEEEeeCCcccCc----------------chHHHHHHHhh
Q 045794 197 AMPSDDN------KE-WVSSTCNY--GDNFIASVRRG--NVHAVQFHPEKSGD----------------VGLSVLRRFLH 249 (578)
Q Consensus 197 v~~~~~~------~~-~~~~~~~~--~d~~iegi~~~--~i~gvQFHPE~~~~----------------~~~~l~~~Fl~ 249 (578)
+.+.... .. .+.++... +..++++++++ |+||+|||||+..- .+..+-+.|++
T Consensus 165 v~~~~~~~~~~l~~~~~vla~~~d~~g~~fis~ie~~~~pi~gvQFHPEks~few~~~~~~~hs~~ai~~~q~~a~ffv~ 244 (273)
T cd01747 165 ISPENFTENGLLSDFFNVLTTNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHSEEAIRLTQYFANFFVN 244 (273)
T ss_pred cCHhhcccccccccceEEEEEEecCCCceEEEEEEecCCceEEEecCCCcccccccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 8532211 11 22233333 44678899865 99999999997421 23456677778
Q ss_pred hccCCCC
Q 045794 250 PKTNIPK 256 (578)
Q Consensus 250 ~~~~~~~ 256 (578)
.++.+..
T Consensus 245 e~r~n~~ 251 (273)
T cd01747 245 EARKSNN 251 (273)
T ss_pred HHhcCCC
Confidence 8887755
|
Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase | Back alignment and domain information |
|---|
Probab=99.68 E-value=9e-16 Score=152.86 Aligned_cols=157 Identities=23% Similarity=0.310 Sum_probs=94.6
Q ss_pred CCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCC--
Q 045794 82 DILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSS-- 159 (578)
Q Consensus 82 dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~-- 159 (578)
.+.++||||+|||..... .. +....++++.+.++|+||||+|||+|+.++... . .++.......+.+.
T Consensus 52 ~l~~~dgivl~GG~~~~~----~~--~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~--~--~~~~~~~~~~~~~~~~ 121 (235)
T cd01746 52 ALKGADGILVPGGFGIRG----VE--GKILAIKYARENNIPFLGICLGMQLAVIEFARN--V--LGLPDANSTEFDPDTP 121 (235)
T ss_pred hhccCCEEEECCCCCCcc----hh--hHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHH--h--cCCccCCccccCCCCC
Confidence 367899999999864322 11 345678888889999999999999999874211 0 00000000000000
Q ss_pred --------------CCCCcceeeeEEEEEccCCcccccCC--CeEEEEEeeeeeec--CCC-CCCcEEEEeecC-CceEE
Q 045794 160 --------------NGFRVPQIGWNALQITKDSEILDDVG--DHHVYFVHSYRAMP--SDD-NKEWVSSTCNYG-DNFIA 219 (578)
Q Consensus 160 --------------~~~~~~~~G~~~i~~~~~~~l~~~l~--~~~~~~~H~~~v~~--~~~-~~~~~~~~~~~~-d~~ie 219 (578)
+.....+++.+.+.+.+++.+.+.++ ...+..+|++.+.+ ... ....+..+.... ++++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~rl~~h~v~i~~~s~l~~~~g~~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ie 201 (235)
T cd01746 122 HPVVDLMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYYGKDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVE 201 (235)
T ss_pred CCEEEECcccccccccCcccccCceEEEECCCChHHHHhCCCEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEE
Confidence 00011234678888888888766555 24555667766532 111 122233343344 79999
Q ss_pred EEEe--CC-EEEEeeCCcccCc--chHHHHHHHh
Q 045794 220 SVRR--GN-VHAVQFHPEKSGD--VGLSVLRRFL 248 (578)
Q Consensus 220 gi~~--~~-i~gvQFHPE~~~~--~~~~l~~~Fl 248 (578)
+++. .+ ++|+|||||.... +...+|+.|+
T Consensus 202 aie~~~~pf~lgvQ~HPE~~~~~~~~~~lF~~fv 235 (235)
T cd01746 202 IVELPDHPFFVGTQFHPEFKSRPLKPHPLFVGFV 235 (235)
T ss_pred EEEcCCCCcEEEEECCCCCcCCCCCccHHHHHhC
Confidence 9994 35 4599999998543 4568999885
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th |
| >TIGR00379 cobB cobyrinic acid a,c-diamide synthase | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-15 Score=162.53 Aligned_cols=199 Identities=16% Similarity=0.162 Sum_probs=138.4
Q ss_pred CcEEEEEECCCCCH--HHHHHHHHHCCCeEEEeCCc--cCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 47 DSVVTLLDYGAGNV--RSVRNAIRHLGFGIKDVQTP--EDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 47 ~~~I~vld~~~g~~--~~i~~~L~~~Gv~v~~v~~~--~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
+.+|+|.-...-++ ..-++.|+++|+++.++++. ++++++|+|+||||.+...........++.+.|++++++|+|
T Consensus 244 ~~~Iava~d~afnFy~~~~~~~L~~~g~~~~~~~~~~d~~l~~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~p 323 (449)
T TIGR00379 244 YVRIAVAQDQAFNFYYQDNLDALTHNAAELVPFSPLEDTELPDVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLP 323 (449)
T ss_pred CcEEEEEechhhceeHHHHHHHHHHCCCEEEEECCccCCCCCCCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCC
Confidence 46899875443233 34567899999999999884 568899999999997544444444456789999999999999
Q ss_pred EEEEechHHHHhhhccc-CCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCC
Q 045794 123 FLGICLGLQLLFQSSEE-NGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSD 201 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e-~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~ 201 (578)
|||||.|+|+|++.+.+ .+...|+|++|..+.. . .+...+||...+...+..+......+++|++|+......+
T Consensus 324 v~g~CgG~~~L~~~i~~~~g~~~~~Gllp~~t~~-~----~~~~~~gy~~~~~~~~~~~~~~g~~~~GhEfH~~~~~~~~ 398 (449)
T TIGR00379 324 IYGECGGLMYLSQSLDNFEGQIFMVGMLPTAATM-T----GRVQGLGYVQAEVVNDCLILWQGEKFRGHEFHYSRMTKLP 398 (449)
T ss_pred EEEEcHHHHHHHhhhcCCCCceeceeeeeeEEEE-c----CCcccccceEEEEecCccccCCCCEEEEEecCCccCcCCC
Confidence 99999999999999854 2334899999999864 2 2233578877766555544432235789999987654222
Q ss_pred CCCCcEEEEeecC-CceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 202 DNKEWVSSTCNYG-DNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 202 ~~~~~~~~~~~~~-d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
............+ ++.-+|+..++++|++.|-.+.+ ...+.++|++.++
T Consensus 399 ~~~~~~~~~~g~g~~~~~dG~~~~nv~gsY~H~~~~~--np~~~~~~l~~~~ 448 (449)
T TIGR00379 399 NAQFAYRVERGRGIIDQLDGICVGSVLASYLHLHAGS--VPKFAAAFVAFAK 448 (449)
T ss_pred CcceEEEeccCCCCCCceeEEEeCCEEEEeeeeeCCc--CHHHHHHHHHHhh
Confidence 1111121111111 11227888899999999988744 3468899988764
|
This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation. |
| >PRK13896 cobyrinic acid a,c-diamide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.8e-15 Score=156.86 Aligned_cols=189 Identities=17% Similarity=0.181 Sum_probs=135.0
Q ss_pred cEEEEE-E--CCCCCHHHHHHHHHHCCCeEEEeCC--ccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 48 SVVTLL-D--YGAGNVRSVRNAIRHLGFGIKDVQT--PEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 48 ~~I~vl-d--~~~g~~~~i~~~L~~~Gv~v~~v~~--~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
++|+|- | | +-+...-++.|+++ +++.++++ ++.++++|+|+||||.+...+ .++...+..+.|++++++|+|
T Consensus 234 ~~iavA~D~AF-~FyY~enl~~L~~~-aelv~fSPl~~~~lp~~D~l~lpGG~~e~~~-~~L~~n~~~~~i~~~~~~G~p 310 (433)
T PRK13896 234 PTVAVARDAAF-CFRYPATIERLRER-ADVVTFSPVAGDPLPDCDGVYLPGGYPELHA-DALADSPALDELADRAADGLP 310 (433)
T ss_pred CeEEEEEcCcc-ceeCHHHHHHHHhc-CcEEEEcCCCCCCCCCCCEEEeCCCchhhHH-HHHHhCCcHHHHHHHHHCCCc
Confidence 678885 2 2 12233446899999 99999988 455889999999999755444 566655566999999999999
Q ss_pred EEEEechHHHHhhhccc--CCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecC
Q 045794 123 FLGICLGLQLLFQSSEE--NGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPS 200 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e--~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~ 200 (578)
|+|||.|+|+|++.+.+ +..++|+|++|+.+.. . .+...+|+..++...++++......+++|++|+.... .
T Consensus 311 i~aeCGG~q~L~~~i~d~eG~~~~m~Gllp~~t~m-~----~r~~~lGy~~~~~~~~~~~~~~G~~i~GhEfHys~~~-~ 384 (433)
T PRK13896 311 VLGECGGLMALAESLTTTDGDTHEMAGVLPADVTM-Q----DRYQALDHVELRATDDTLTAGAGETLRGHEFHYSSAT-V 384 (433)
T ss_pred EEEEehHHHHhhccccCCCCCEecccceeeEEEEE-c----cceeEEEeEEEEEccCccccCCCCeEEEEeeeCeEEE-C
Confidence 99999999999999863 4567999999999865 2 2235789888877666555432235899999988765 2
Q ss_pred CCCCCcEEEEeecCCc---eEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhh
Q 045794 201 DDNKEWVSSTCNYGDN---FIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHP 250 (578)
Q Consensus 201 ~~~~~~~~~~~~~~d~---~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~ 250 (578)
+....+.... ..+.+ ..+|+..++++|++.|-.+.+. ++++|++.
T Consensus 385 ~~~~~~~~~~-~~g~g~~~~~dG~~~~nv~asY~H~hf~~~----~~~~f~~~ 432 (433)
T PRK13896 385 GSDARFAFDV-ERGDGIDGEHDGLTEYRTLGTYAHVHPESG----AFDRFLEA 432 (433)
T ss_pred CCCCceEEEe-ccCCCCCCcccEEEECCEEEEehhhcCCch----HHHHHHhh
Confidence 2221222211 11211 1268888999999999998552 88888764
|
|
| >PRK01077 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=158.84 Aligned_cols=198 Identities=19% Similarity=0.165 Sum_probs=137.5
Q ss_pred CcEEEEEECCCCC--HHHHHHHHHHCCCeEEEeCCc--cCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 47 DSVVTLLDYGAGN--VRSVRNAIRHLGFGIKDVQTP--EDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 47 ~~~I~vld~~~g~--~~~i~~~L~~~Gv~v~~v~~~--~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
+.+|+|.-....+ +.+-.+.|++.|+++.++++. +++.++|+||||||.....+........+.+.|+++.++++|
T Consensus 245 ~~~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~~~~~l~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~ 324 (451)
T PRK01077 245 GVRIAVARDAAFNFYYPENLELLRAAGAELVFFSPLADEALPDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKP 324 (451)
T ss_pred CceEEEEecCcccccHHHHHHHHHHCCCEEEEeCCcCCCCCCCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCC
Confidence 4679998655333 334568899999999999873 558899999999997544444455555788999999999999
Q ss_pred EEEEechHHHHhhhccc--CCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecC
Q 045794 123 FLGICLGLQLLFQSSEE--NGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPS 200 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e--~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~ 200 (578)
|+|||.|+|+|+..+.+ +..+.|+|++|..+.. .. +...+|+.......+..+...-..+.+|++|+......
T Consensus 325 i~aiCgG~~~L~~~i~d~~g~~~~~lGll~~~t~~-~~----~~~~~g~~~~~~~~~~~~~~~g~~i~G~E~H~g~~~~~ 399 (451)
T PRK01077 325 IYAECGGLMYLGESLEDADGERHPMVGLLPGEASM-TK----RLQALGYREAEALEDTLLGKAGERLRGHEFHYSTLETP 399 (451)
T ss_pred EEEEcHHHHHHHhhhcCCCCCeeecccccceeEEE-cC----CcccccceEEEeecCCcCCCCCCEEEEECCCceEeeCC
Confidence 99999999999999864 2356899999998764 22 22256776666544444332223578999998876422
Q ss_pred CCCCCcEEEEeecCCc-eEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 201 DDNKEWVSSTCNYGDN-FIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 201 ~~~~~~~~~~~~~~d~-~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
+. .+........+++ ..+|+..++++|++.|..+.+ ...+.++|++.++
T Consensus 400 ~~-~~~~~~~~~~g~~~~~dG~~~~nv~gtY~H~~f~~--n~~~~~~~l~~~~ 449 (451)
T PRK01077 400 EE-APLYRVRDADGRPLGEEGYRRGNVLASYLHLHFAS--NPDAAARFLAACR 449 (451)
T ss_pred CC-CccEEEEeCCCCCCcCCeEEeCCEEEEEeEeeccc--CHHHHHHHHHHHh
Confidence 21 2222222212221 126777889999999998853 3468899988764
|
|
| >COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=157.41 Aligned_cols=200 Identities=21% Similarity=0.295 Sum_probs=121.7
Q ss_pred CCCCcEEEEEECCC---CCHHHHHHHHHHCC------CeEEEeCCcc-------CCCC-CCEEEECCCCCchHHHHHHHh
Q 045794 44 TSSDSVVTLLDYGA---GNVRSVRNAIRHLG------FGIKDVQTPE-------DILN-ANRLIFPGVGAFAAAMDVLNK 106 (578)
Q Consensus 44 ~~~~~~I~vld~~~---g~~~~i~~~L~~~G------v~v~~v~~~~-------dl~~-~DGlILpGGg~~~~~~~~l~~ 106 (578)
+....+|+++.=.. ....++..+|..+| +++.+++..+ .+.. +|||++|||-.. ...+
T Consensus 285 ~~~~v~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~----RG~e- 359 (533)
T COG0504 285 PKKEVTIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGY----RGVE- 359 (533)
T ss_pred CCCceEEEEEECCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCCc----CchH-
Confidence 44447799985222 24557788888887 3455665431 1333 999999998321 1122
Q ss_pred hcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCC----------------CCCCcceeeeE
Q 045794 107 TGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSS----------------NGFRVPQIGWN 170 (578)
Q Consensus 107 ~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~----------------~~~~~~~~G~~ 170 (578)
+....++.+.++++|+||||+|||+....++.+ -+|+-++..+.|++. +......+|.+
T Consensus 360 -GkI~Ai~yAREn~iP~lGIClGmQ~aviE~ARn----v~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y 434 (533)
T COG0504 360 -GKIAAIRYARENNIPFLGICLGMQLAVIEFARN----VLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAY 434 (533)
T ss_pred -HHHHHHHHHHhcCCCEEEEchhHHHHHHHHHHH----hcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccce
Confidence 556788999999999999999999998864321 122222222222211 00112455777
Q ss_pred EEEEccCCcccccCCCeEEEEEeeeeeecCC------CCCCcEEEEeecC-CceEEEEE---eCCEEEEeeCCcccCc--
Q 045794 171 ALQITKDSEILDDVGDHHVYFVHSYRAMPSD------DNKEWVSSTCNYG-DNFIASVR---RGNVHAVQFHPEKSGD-- 238 (578)
Q Consensus 171 ~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~------~~~~~~~~~~~~~-d~~iegi~---~~~i~gvQFHPE~~~~-- 238 (578)
+..+.+++...+-+....+++-|..+....+ ....+ ..+.... ...+|.++ +.+++|+|||||+.+.
T Consensus 435 ~~~l~~gT~a~~lY~~~~v~ERHRHRYEvN~~y~~~le~~Gl-~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~ 513 (533)
T COG0504 435 PCRLKPGTLAAKLYGKDEIYERHRHRYEVNNDYRDQLEKAGL-VFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPL 513 (533)
T ss_pred eeecCCCcHHHHHhCCCeeeeeccchhhcCHHHHHHHHhCCe-EEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCC
Confidence 7777777665554443445554444433222 12233 3343333 36788888 4689999999999764
Q ss_pred chHHHHHHHhhhccCC
Q 045794 239 VGLSVLRRFLHPKTNI 254 (578)
Q Consensus 239 ~~~~l~~~Fl~~~~~~ 254 (578)
....+|..|++++...
T Consensus 514 ~phPlf~~fv~Aa~~~ 529 (533)
T COG0504 514 RPHPLFVGFVKAALEY 529 (533)
T ss_pred CCCccHHHHHHHHHHh
Confidence 5578999999887543
|
|
| >PLN02327 CTP synthase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-15 Score=162.11 Aligned_cols=201 Identities=20% Similarity=0.209 Sum_probs=115.6
Q ss_pred CCCCcEEEEEE-CC--CCCHHHHHHHHHHCC------CeEEEeCCc------------------cCCCCCCEEEECCCCC
Q 045794 44 TSSDSVVTLLD-YG--AGNVRSVRNAIRHLG------FGIKDVQTP------------------EDILNANRLIFPGVGA 96 (578)
Q Consensus 44 ~~~~~~I~vld-~~--~g~~~~i~~~L~~~G------v~v~~v~~~------------------~dl~~~DGlILpGGg~ 96 (578)
+....+|+++. |- .....++..+|..+| +++.+++.. +.+.++|||++|||..
T Consensus 294 ~~~~v~IalVGKY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG 373 (557)
T PLN02327 294 LTEPVRIAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFG 373 (557)
T ss_pred CCCceEEEEEecccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCC
Confidence 34457799984 21 124557777887766 345555431 2367899999999842
Q ss_pred chHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCC--------------
Q 045794 97 FAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGF-------------- 162 (578)
Q Consensus 97 ~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~-------------- 162 (578)
.. .. .+....++.+.+.++|+||||+|||+++..+..+ -+|+-++..+.|.++...
T Consensus 374 ~~----~~--~G~i~ai~~are~~iP~LGIClGmQl~viefaRn----vlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~ 443 (557)
T PLN02327 374 DR----GV--EGKILAAKYARENKVPYLGICLGMQIAVIEFARS----VLGLKDANSTEFDPETPNPCVIFMPEGSKTHM 443 (557)
T ss_pred Cc----cc--ccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHh----hcCCcCCCccccCCCCCCCEEEEehhcccccC
Confidence 11 11 1445667888889999999999999999975322 123333333323221000
Q ss_pred -CcceeeeEEEEEc-cCCcccccCC-C--eEEEEEeeeeeecC--CCC-CCcEEEEeecCC-ceEEEEEe--CC-EEEEe
Q 045794 163 -RVPQIGWNALQIT-KDSEILDDVG-D--HHVYFVHSYRAMPS--DDN-KEWVSSTCNYGD-NFIASVRR--GN-VHAVQ 230 (578)
Q Consensus 163 -~~~~~G~~~i~~~-~~~~l~~~l~-~--~~~~~~H~~~v~~~--~~~-~~~~~~~~~~~d-~~iegi~~--~~-i~gvQ 230 (578)
....+|-+...+. +++.+.+.+. . +...+.|+|.+.+. +.. ...+..+....+ +.+|+++. .+ ++|+|
T Consensus 444 GGtMRLG~~~~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQ 523 (557)
T PLN02327 444 GGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQ 523 (557)
T ss_pred CceEECCCcccccCCCCCHHHHHhCCccceeeeeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEE
Confidence 0122343333443 4444433333 1 33455666666432 111 122334444444 47999983 34 55999
Q ss_pred eCCcccCc--chHHHHHHHhhhccCC
Q 045794 231 FHPEKSGD--VGLSVLRRFLHPKTNI 254 (578)
Q Consensus 231 FHPE~~~~--~~~~l~~~Fl~~~~~~ 254 (578)
||||+.+. +...+|..|++.+...
T Consensus 524 fHPE~~s~p~~~~pLF~~Fv~Aa~~~ 549 (557)
T PLN02327 524 FHPEFKSRPGKPSPLFLGLIAAASGQ 549 (557)
T ss_pred cCCCCCCCCCCchHHHHHHHHHHHHh
Confidence 99999643 4578999999987653
|
|
| >PRK00784 cobyric acid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-14 Score=158.97 Aligned_cols=189 Identities=20% Similarity=0.228 Sum_probs=137.0
Q ss_pred CcEEEEEECC-CCCHHHHHHHHHH-CCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEE
Q 045794 47 DSVVTLLDYG-AGNVRSVRNAIRH-LGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFL 124 (578)
Q Consensus 47 ~~~I~vld~~-~g~~~~i~~~L~~-~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIl 124 (578)
+.+|+|+.|+ ..++.++ +.|++ .|++++++++.++++++|+|+||||++...++.+.+..++.+.|++++++++|+|
T Consensus 251 ~~~i~v~~~~~a~~f~nl-~~l~~~~g~~v~~~s~~~~l~~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pil 329 (488)
T PRK00784 251 ALRIAVIRLPRISNFTDF-DPLRAEPGVDVRYVRPGEPLPDADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVL 329 (488)
T ss_pred ceEEEEEeCCCcCCccCh-HHHhhcCCCeEEEECCccccccCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEE
Confidence 4689999877 4455554 67776 9999999999888999999999999977777777777789999999999999999
Q ss_pred EEechHHHHhhhcc--cCCC-----cCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeee
Q 045794 125 GICLGLQLLFQSSE--ENGP-----VNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRA 197 (578)
Q Consensus 125 GIClG~QlLa~a~~--e~~~-----~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v 197 (578)
|||+|||+|+..+. ++.. ..|+|++|+++.. .. ...+|+....+... ...+.+|++|+...
T Consensus 330 g~C~G~~~L~~~~~~~~G~~~~~~~~~glG~l~~~~~~-~~-----~~~~g~~~~~~~~~------g~~~~GhEfH~s~~ 397 (488)
T PRK00784 330 GICGGYQMLGRRIADPDGVEGAPGSVEGLGLLDVETVF-EP-----EKTLRQVTGLLLGS------GAPVSGYEIHMGRT 397 (488)
T ss_pred EECHHHHHHhhhccCCCCcccCCCCcCCCCceeeEEEe-cC-----ceEEccEEEEEcCC------CceEEEEEecCcEe
Confidence 99999999999875 2222 3899999999864 21 12556555432111 12468899998765
Q ss_pred ecCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCcchHHHHHHHhhhccCCC
Q 045794 198 MPSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIP 255 (578)
Q Consensus 198 ~~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~~ 255 (578)
...+...+...... + + .+|+.. ++++|++.|--+.+ ..+.++|++.++...
T Consensus 398 ~~~~~~~~~~~~~~--g-~-~~G~~~~~~nv~atY~H~~~~n---p~~~~~~l~~~~~~~ 450 (488)
T PRK00784 398 TGPALARPFLRLDD--G-R-PDGAVSADGRVFGTYLHGLFDN---DAFRRALLNWLGARK 450 (488)
T ss_pred eCCCCCcCcEEecC--C-C-cCceEecCCCEEEEeeeeccCC---HHHHHHHHHHHHHhc
Confidence 42111112222221 2 1 267777 89999999987743 578999998887543
|
|
| >KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.7e-15 Score=153.08 Aligned_cols=181 Identities=20% Similarity=0.257 Sum_probs=113.7
Q ss_pred CCcEEEEEECCCCCHHHHHHHHHHC-CCeEE-EeCCc-------cCC---CCCCEEEE-CCCCCc--hHHHHHHHhhcHH
Q 045794 46 SDSVVTLLDYGAGNVRSVRNAIRHL-GFGIK-DVQTP-------EDI---LNANRLIF-PGVGAF--AAAMDVLNKTGMA 110 (578)
Q Consensus 46 ~~~~I~vld~~~g~~~~i~~~L~~~-Gv~v~-~v~~~-------~dl---~~~DGlIL-pGGg~~--~~~~~~l~~~~l~ 110 (578)
.+.+++++|..+++..|+.+.|... |+..+ ++.+. +++ .-+|+|++ ||+|++ ..++.-+ .
T Consensus 13 ~rl~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~-----~ 87 (767)
T KOG1224|consen 13 PRLRTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGIC-----L 87 (767)
T ss_pred hheeEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHHH-----H
Confidence 4678999998889999999999875 44333 23221 223 34999998 776765 2222111 1
Q ss_pred HHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeE-EEEEccCCcccccCC----
Q 045794 111 EALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWN-ALQITKDSEILDDVG---- 185 (578)
Q Consensus 111 ~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~-~i~~~~~~~l~~~l~---- 185 (578)
+++.+ .+++||+|||+|||.|+.+ .| +.+.+ .+.|..|.. .++ +.+..+|.+++
T Consensus 88 rl~~~--~~~iPilGICLGfQal~l~-------hG-----A~v~~------~n~p~HGrvs~i~-~~~~~~f~gi~sg~~ 146 (767)
T KOG1224|consen 88 RLLLE--CRDIPILGICLGFQALGLV-------HG-----AHVVH------ANEPVHGRVSGIE-HDGNILFSGIPSGRN 146 (767)
T ss_pred HHHHh--cCCCceeeeehhhHhHhhh-------cc-----cceec------CCCcccceeeeEE-ecCcEEEccCCCCCc
Confidence 22222 2479999999999999983 45 33332 223333432 222 23334444444
Q ss_pred -CeEEEEEeeeeeecCCCCCCcEEEEeecCCc-eEEEEEe--CCEEEEeeCCcccC-cchHHHHHHHhhhcc
Q 045794 186 -DHHVYFVHSYRAMPSDDNKEWVSSTCNYGDN-FIASVRR--GNVHAVQFHPEKSG-DVGLSVLRRFLHPKT 252 (578)
Q Consensus 186 -~~~~~~~H~~~v~~~~~~~~~~~~~~~~~d~-~iegi~~--~~i~gvQFHPE~~~-~~~~~l~~~Fl~~~~ 252 (578)
.+++..+|+.++.+.+...-..+.+....++ ..+++.+ .|.||+|||||... ..+..||+||++..-
T Consensus 147 ~~fK~~RYHSL~in~~pid~l~il~t~~ddng~ilMsi~~~~fPhfG~qyHPES~~s~~g~~lfkNFl~lt~ 218 (767)
T KOG1224|consen 147 SDFKVVRYHSLIINSLPIDLLPILWTIYDDNGHILMSIMHSSFPHFGLQYHPESIASTYGSQLFKNFLDLTV 218 (767)
T ss_pred ccceeEEeEEEEecCCchhhhcceeEeecCCceEEEEeeccCCCccceeeChHHhhhhhhHHHHHHHHHhhc
Confidence 6899999999998766533222333333333 4566663 58999999999854 478899999987644
|
|
| >KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-15 Score=138.53 Aligned_cols=157 Identities=17% Similarity=0.278 Sum_probs=109.5
Q ss_pred CHHHHHHHHHHCCCeEEEe-------CCccCCCCCCEEEECCCC-CchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechH
Q 045794 59 NVRSVRNAIRHLGFGIKDV-------QTPEDILNANRLIFPGVG-AFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGL 130 (578)
Q Consensus 59 ~~~~i~~~L~~~Gv~v~~v-------~~~~dl~~~DGlILpGGg-~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~ 130 (578)
+..-++..|.+-|.++..+ |..+||++|||++|+|+. +...+.+|+. .++..+++.....+||+|||+||
T Consensus 26 y~nvfvsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~dAf~d~dWI~--KLcs~~kkld~mkkkvlGICFGH 103 (245)
T KOG3179|consen 26 YFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKHDAFSDADWIK--KLCSFVKKLDFMKKKVLGICFGH 103 (245)
T ss_pred HHHHHHHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcccccccchHHH--HHHHHHHHHHhhccceEEEeccH
Confidence 4444667788888765433 334679999999999984 3333567876 67888888888889999999999
Q ss_pred HHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEcc----CCcccccCC-CeEEEEEeeeeeecCCCCCC
Q 045794 131 QLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK----DSEILDDVG-DHHVYFVHSYRAMPSDDNKE 205 (578)
Q Consensus 131 QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~----~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~ 205 (578)
|++|.+ .| +++.+ ..+.|.++...+++.. ...+|..++ .....+.|++.+...|....
T Consensus 104 Qiiara-------~G-----g~Vgr-----a~KG~~~~lg~itivk~~~~~~~yFG~~~~~l~IikcHqDevle~PE~a~ 166 (245)
T KOG3179|consen 104 QIIARA-------KG-----GKVGR-----APKGPDLGLGSITIVKDAEKPEKYFGEIPKSLNIIKCHQDEVLELPEGAE 166 (245)
T ss_pred HHHHHh-------hC-----Ccccc-----CCCCCcccccceEEEEecccchhhcccchhhhhHHhhcccceecCCchhh
Confidence 999994 33 45443 2334455444444332 234555444 45667899999988888766
Q ss_pred cEEEEeecCCceEEEEE-eCCEEEEeeCCcccC
Q 045794 206 WVSSTCNYGDNFIASVR-RGNVHAVQFHPEKSG 237 (578)
Q Consensus 206 ~~~~~~~~~d~~iegi~-~~~i~gvQFHPE~~~ 237 (578)
.+..+..++ +|++. .++++++|-|||+..
T Consensus 167 llasSe~ce---ve~fs~~~~~l~fQGHPEyn~ 196 (245)
T KOG3179|consen 167 LLASSEKCE---VEMFSIEDHLLCFQGHPEYNK 196 (245)
T ss_pred hhccccccc---eEEEEecceEEEecCCchhhH
Confidence 666666664 56676 568999999999964
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-14 Score=134.33 Aligned_cols=190 Identities=20% Similarity=0.198 Sum_probs=141.5
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
..+|+.-.+-||-.|-+ + -.+-|+.+++.+++|| +|-=-|+++|.++||||+++++++|.++||+
T Consensus 36 ~~mA~Aa~~gGAvgiR~---~-----------gv~dIkai~~~v~vPI-IGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~ 100 (229)
T COG3010 36 AAMALAAEQGGAVGIRI---E-----------GVEDIKAIRAVVDVPI-IGIIKRDYPDSPVRITPTLKEVDALAEAGAD 100 (229)
T ss_pred HHHHHHHHhCCcceEee---c-----------chhhHHHHHhhCCCCe-EEEEecCCCCCCceecccHHHHHHHHHCCCc
Confidence 34666666678764421 1 1456778888899999 6666789999999999999999999999999
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTV 469 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (578)
.|++......+|...++ +++++ .+|..+-+|.
T Consensus 101 IIA~DaT~R~RP~~~~~-------~~i~~--~k~~~~l~MA--------------------------------------- 132 (229)
T COG3010 101 IIAFDATDRPRPDGDLE-------ELIAR--IKYPGQLAMA--------------------------------------- 132 (229)
T ss_pred EEEeecccCCCCcchHH-------HHHHH--hhcCCcEEEe---------------------------------------
Confidence 99998888886531221 44444 3454443333
Q ss_pred cccccCCCCCHHHHHHHHHHcCCcEEEEe--ccCC-CCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 045794 470 NGGREGRPIGAYELAKAVEDLGAGEILLN--CIDC-DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNA 546 (578)
Q Consensus 470 ~g~~~~~~~~~~e~~~~~~~~G~~~ii~t--di~~-dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~ 546 (578)
+++.+|-...+.++|++-|=-| ..+. .-+-.+||+++++++.+ .+++|||.|.+.+++..+++++ .|+
T Consensus 133 -------D~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~-~Ga 203 (229)
T COG3010 133 -------DCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIE-IGA 203 (229)
T ss_pred -------ccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHH-hCC
Confidence 3445677788889999866522 2222 22567899999999988 6999999999999999999996 999
Q ss_pred hHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 547 SAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 547 ~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
++|.||+|+.+.+..-+.+.+.+++
T Consensus 204 ~aVvVGsAITRp~~It~~F~~~ik~ 228 (229)
T COG3010 204 DAVVVGSAITRPEEITQWFVDAIKS 228 (229)
T ss_pred eEEEECcccCCHHHHHHHHHHHHhc
Confidence 9999999998766555555555543
|
|
| >PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea [] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=129.25 Aligned_cols=145 Identities=21% Similarity=0.239 Sum_probs=103.8
Q ss_pred cCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcc-----cCC--CcCCCcccCcee
Q 045794 81 EDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSE-----ENG--PVNGLGLIPGVV 153 (578)
Q Consensus 81 ~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~-----e~~--~~~Glgl~~~~v 153 (578)
+.+.++|+|+||||.....+..+.+..++.+.|+++++.++||+|||.|+|+|++.+. +.+ ...|+|++|..+
T Consensus 3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~d~~e~~~~g~~~~glGllp~~t 82 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESIIDGVEGDADGKRYPGLGLLPIDT 82 (158)
T ss_pred CCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHhhccccCCCCcceeeeceeeeEE
Confidence 4578999999999987666776766678999999999999999999999999999986 322 478999999998
Q ss_pred eeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcEEEEeecCCceEEEE-EeCCEEEEeeC
Q 045794 154 GRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASV-RRGNVHAVQFH 232 (578)
Q Consensus 154 ~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~~~~~~~~d~~iegi-~~~~i~gvQFH 232 (578)
.. .+...+++....... ...-..+.+|++|.......+........ +..++.-..+ ..++++|++.|
T Consensus 83 ~~------~~~~~~g~~~~~~~~----~~~g~~v~G~E~H~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~n~~gtY~H 150 (158)
T PF07685_consen 83 TM------EKEKALGYVEARVDN----GKKGEEVRGHEFHYGRTTGIPGEPPFFKV--NGGGGFDGAIYQKGNVLGTYLH 150 (158)
T ss_pred EE------cCcEEEEEEEEEECC----CCCCCEEEEEEEeCeEEECCCCCcceEEE--ecCCcccceEeCCCCEEEEeee
Confidence 75 224566776665543 11112579999998887765543332222 2222221222 35899999999
Q ss_pred CcccC
Q 045794 233 PEKSG 237 (578)
Q Consensus 233 PE~~~ 237 (578)
--+.+
T Consensus 151 g~f~~ 155 (158)
T PF07685_consen 151 GHFDN 155 (158)
T ss_pred eeECC
Confidence 77654
|
Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process |
| >COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-13 Score=142.44 Aligned_cols=197 Identities=18% Similarity=0.195 Sum_probs=141.8
Q ss_pred CcEEEEEECC--CCCHHHHHHHHHHCCCeEEEeCCcc--CCC-CCCEEEECCCCCchHHHHHHH-hhcHHHHHHHHHhCC
Q 045794 47 DSVVTLLDYG--AGNVRSVRNAIRHLGFGIKDVQTPE--DIL-NANRLIFPGVGAFAAAMDVLN-KTGMAEALCAYIEKD 120 (578)
Q Consensus 47 ~~~I~vld~~--~g~~~~i~~~L~~~Gv~v~~v~~~~--dl~-~~DGlILpGGg~~~~~~~~l~-~~~l~~~i~~~~~~g 120 (578)
+.+|+|-.=. +=+...-++.|+++|++++++++.. +++ ++|+|+||||-..... ..+. .+.+.+.|+++.+.|
T Consensus 245 ~~rIAVA~D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D~~lP~~~D~vYlgGGYPElfA-~~L~~n~~~~~~i~~~~~~G 323 (451)
T COG1797 245 GVRIAVARDAAFNFYYPENLELLREAGAELVFFSPLADEELPPDVDAVYLGGGYPELFA-EELSANESMRRAIKAFAAAG 323 (451)
T ss_pred CceEEEEecchhccccHHHHHHHHHCCCEEEEeCCcCCCCCCCCCCEEEeCCCChHHHH-HHHhhCHHHHHHHHHHHHcC
Confidence 3678886311 1133345789999999999999865 466 6999999998432222 1222 225889999999999
Q ss_pred CCEEEEechHHHHhhhccc--CCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeee
Q 045794 121 RPFLGICLGLQLLFQSSEE--NGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAM 198 (578)
Q Consensus 121 ~PIlGIClG~QlLa~a~~e--~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~ 198 (578)
+||+|.|+|++.|+..+++ +..+.++|++|+.+.+ ..+...+||..++...++++......++++++|.....
T Consensus 324 ~piyaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~m-----~~Rl~~lGY~~~~~~~d~~~~~~G~~irGHEFHyS~~~ 398 (451)
T COG1797 324 KPIYAECGGLMYLGESLEDADGDTYEMVGVLPGSTRM-----TKRLQALGYREAEAVDDTLLLRAGEKIRGHEFHYSRLI 398 (451)
T ss_pred CceEEecccceeehhheeccCCceeeeeeeeccchhh-----hhhhhccceeEEEecCCcccccCCceeeeeeeeeeecc
Confidence 9999999999999999863 3578999999999764 23346789999999888887765457899999987765
Q ss_pred cCCCCCCcEEEEeecCC-ceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhc
Q 045794 199 PSDDNKEWVSSTCNYGD-NFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPK 251 (578)
Q Consensus 199 ~~~~~~~~~~~~~~~~d-~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~ 251 (578)
..+...+........+. +.-+++..+|++|++.|-.+.+. ..++++|++.+
T Consensus 399 ~~~~~~~a~~~~~g~g~~~~~~G~~~gnv~asY~H~H~~s~--~~~~~~~v~~~ 450 (451)
T COG1797 399 TEEDAEPAFRVRRGDGIDNGRDGYRSGNVLASYLHLHFASN--PAFAARFVAAA 450 (451)
T ss_pred cCCcCceeeeeecccCccccccceeeCCeEEEEEeeecccC--HHHHHHHHHhh
Confidence 44432333323322221 12357888999999999988653 47888998765
|
|
| >PRK06278 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=149.23 Aligned_cols=187 Identities=20% Similarity=0.246 Sum_probs=113.9
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCC-eE--EEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEE
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGF-GI--KDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFL 124 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv-~v--~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIl 124 (578)
++|+|+++. +..++++..|. ++ ..++.++++.++|+||||||..... ..+ ..++.+.++++ ++|||
T Consensus 1 m~iGvlal~-----sv~~al~~lg~~~~~vv~~~~~~~l~~~D~lILPGG~~~~~--~~l-~~~l~~~i~~~---g~pvl 69 (476)
T PRK06278 1 MEIGLLDIK-----GSLPCFENFGNLPTKIIDENNIKEIKDLDGLIIPGGSLVES--GSL-TDELKKEILNF---DGYII 69 (476)
T ss_pred CEEEEEehh-----hHHHHHHHhcCCCcEEEEeCChHHhccCCEEEECCCchhhc--chH-HHHHHHHHHHc---CCeEE
Confidence 359999986 55666766664 44 4477788899999999999752211 111 12455556554 89999
Q ss_pred EEechHHHHhhhcccCC------CcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEee-eee
Q 045794 125 GICLGLQLLFQSSEENG------PVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHS-YRA 197 (578)
Q Consensus 125 GIClG~QlLa~a~~e~~------~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~-~~v 197 (578)
|||+|||||++.+.++. ...|||++|+. |... +. ..+....+....++......+.+|++|. .++
T Consensus 70 GICgG~QmLg~~~~eg~e~~~~~~~~GLGll~~~---~~~~---K~--~~~v~g~v~~~~~~~~~~~~v~GyEiH~~G~t 141 (476)
T PRK06278 70 GICSGFQILSEKIDIGRKSPVPIIKEGLGLLDVE---FSPL---IC--TDRVEFKIEDDSLFTKKNERGTGFHCHTYGNI 141 (476)
T ss_pred EEcHHHHhcccccccCcccccccccCccceeeee---ecCc---ee--EeEEEEEEEecccccCCCCEEEEEeeccCCEE
Confidence 99999999999876542 36799999986 3322 11 1112222221111111112578999998 444
Q ss_pred ecCCCCCCcEE---EEee----cCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccCCCC
Q 045794 198 MPSDDNKEWVS---STCN----YGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPK 256 (578)
Q Consensus 198 ~~~~~~~~~~~---~~~~----~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~~~ 256 (578)
...+...++.. .... .+....+|+.++++||+|+|..+. +..+-++|++.+.+.+.
T Consensus 142 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~eG~~~g~V~GTYlHGifd---n~~~~~~~L~~l~~~~~ 204 (476)
T PRK06278 142 EINGDTKILTYSKIQKLNYKMVGEKEILSGVFKGKVFGTMVHNFLD---NPFVVENFLKYLKIKED 204 (476)
T ss_pred EECCCccchhhcceeeeeccCCCCcCCcCceecCCEEEEecCcccC---CHHHHHHHHHHcCCChH
Confidence 32121122211 1111 111223566688999999999996 44677889988887633
|
|
| >TIGR00313 cobQ cobyric acid synthase CobQ | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=148.32 Aligned_cols=185 Identities=16% Similarity=0.209 Sum_probs=128.6
Q ss_pred cEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEE
Q 045794 48 SVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGI 126 (578)
Q Consensus 48 ~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGI 126 (578)
.+|+|+.++ ..++.++ +.|+..- .+.+.+..++++++|+|+||||.+...++.+++..++.+.|+++++.+.|||||
T Consensus 248 ~~Iav~~~~~~~nf~~~-~~L~~~~-~~~f~~~~~~l~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgi 325 (475)
T TIGR00313 248 IRIGVVRLPRISNFTDF-EPLRYEA-FVKFLDLDDSLTGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGI 325 (475)
T ss_pred cEEEEEcCCcccCccCh-HHHhhCC-CeEEeCCccccccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEE
Confidence 689999877 3455553 5666652 566677777888999999999998777777777778999999999999999999
Q ss_pred echHHHHhhhcccC-------CCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeec
Q 045794 127 CLGLQLLFQSSEEN-------GPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMP 199 (578)
Q Consensus 127 ClG~QlLa~a~~e~-------~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~ 199 (578)
|+|||+|++.+.+. +...|+|++|+.+.. .. ...+|+........ .. + ..+.+|++|+..+..
T Consensus 326 CgG~q~Lg~~i~d~~g~e~~~~~~~glGll~~~t~~-~~-----~~~~g~~~~~~~~~--~~-g-~~~~G~E~H~g~t~~ 395 (475)
T TIGR00313 326 CGGYQMLGKELIDKEKKESDVGDIEGLGLLDAKTYF-GE-----DKITKQSQGRVEGN--NR-G-ETVKGYEIHEGFTRS 395 (475)
T ss_pred cHHHHHhhhhhcCCccccCCCCCcceeeeeeeEEEE-cC-----CcEEEEEEEEEecC--CC-C-CeEEEEeeeceEECC
Confidence 99999999987532 246899999998764 22 23366665444321 11 1 247899999987642
Q ss_pred CCCCCCcEEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccCC
Q 045794 200 SDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~ 254 (578)
. ..++..... .+ .+ -.++++||+++|--+. +..+-++|++.++..
T Consensus 396 -~-~~pl~~~~~-~G--~~--~~~g~v~GtYlHgl~~---n~~~~~~~l~~~~~~ 440 (475)
T TIGR00313 396 -K-EKPLFKIER-FG--NC--GNDGNAWGTYLHGLFE---NYEFRRYIINLLRKR 440 (475)
T ss_pred -C-CcCceeccC-CC--cc--CCCCCEEEEeeeeccC---CHHHHHHHHHHHHHh
Confidence 1 123222211 11 11 1247999999998553 346778888887654
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=139.17 Aligned_cols=123 Identities=11% Similarity=0.127 Sum_probs=109.6
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCC-CCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGR-PIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
.+|+++||++++. .|...+|.+.+ ..+++++++.+.+.|+++++++|+++++
T Consensus 4 ~~iipaiD~~~G~---------------------------~V~~~~~~~~~~~~dp~~~a~~~~~~g~~~l~i~Dl~~~~ 56 (258)
T PRK01033 4 PRIIPCLLLKDGG---------------------------LVKTVKFKDPRYIGDPINAVRIFNEKEVDELIVLDIDASK 56 (258)
T ss_pred cEEEEEEEEECCc---------------------------EEEeecccCceeCCCHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 5899999998752 57788898766 6699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+.+|+|+++++++++.+++||+++||+++++|++++++ .|++++++|++++.++..+.++.+.+.++.|.|
T Consensus 57 ~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~-~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~v 127 (258)
T PRK01033 57 RGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFS-LGVEKVSINTAALEDPDLITEAAERFGSQSVVV 127 (258)
T ss_pred CCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHH-CCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEE
Confidence 99999999999999999999999999999999999995 899999999999988877788777776555543
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-13 Score=137.64 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=106.8
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCC-CCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGR-PIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
+|+++||+++++ .|...+|.+.. ..++.++++.+++.|+++++++|++++|+
T Consensus 2 ~ii~~iD~~~g~---------------------------~v~~~~~~~~~~~~d~~~~a~~~~~~G~~~i~i~d~~~~~~ 54 (243)
T cd04731 2 RIIPCLDVKDGR---------------------------VVKGVNFKNLRDAGDPVELAKRYNEQGADELVFLDITASSE 54 (243)
T ss_pred eEEEEEEEECCe---------------------------EEEeEccccceeCCCHHHHHHHHHHCCCCEEEEEcCCcccc
Confidence 699999999863 23555677654 45899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCe
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIE 575 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~ 575 (578)
..|+|+++++++++.+++||+++|||++.+|++++++ .||++|++|++++.++..+.++.+.+.++.+.
T Consensus 55 ~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~-~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~ 123 (243)
T cd04731 55 GRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLR-AGADKVSINSAAVENPELIREIAKRFGSQCVV 123 (243)
T ss_pred cCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCceEEECchhhhChHHHHHHHHHcCCCCEE
Confidence 9999999999999999999999999999999999996 89999999999999988888888887665454
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-13 Score=132.07 Aligned_cols=125 Identities=20% Similarity=0.301 Sum_probs=107.8
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
.||+.+||++++++. |-|+. .+-+. .+ +++++++.+.+.|++|+++.||++.-.
T Consensus 4 kRIIPCLDVk~GrVV-------KGv~F-----------------~~lrd-~G-DpVelA~~Y~e~GADElvFlDItAs~~ 57 (256)
T COG0107 4 KRIIPCLDVKDGRVV-------KGVNF-----------------KNLRD-AG-DPVELAKRYNEEGADELVFLDITASSE 57 (256)
T ss_pred ceeEeeEEccCCEEE-------ecccc-----------------cchhh-cC-ChHHHHHHHHHcCCCeEEEEecccccc
Confidence 589999999987553 11111 11111 12 799999999999999999999999888
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeec
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 577 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~ 577 (578)
.+.++++.++++++.+.+|+.++|||++.+|++++++ .|||.|.|+|+...++-.+.++.+.+.+|+|.|-
T Consensus 58 gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~-aGADKVSINsaAv~~p~lI~~~a~~FGsQciVva 128 (256)
T COG0107 58 GRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLR-AGADKVSINSAAVKDPELITEAADRFGSQCIVVA 128 (256)
T ss_pred cchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHH-cCCCeeeeChhHhcChHHHHHHHHHhCCceEEEE
Confidence 8889999999999999999999999999999999996 9999999999999999999999999999998764
|
|
| >PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=130.88 Aligned_cols=193 Identities=20% Similarity=0.301 Sum_probs=114.7
Q ss_pred CcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCc------cCCCCCCEEEECCCCCchHHHH-------HHHhhcHHHH
Q 045794 47 DSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTP------EDILNANRLIFPGVGAFAAAMD-------VLNKTGMAEA 112 (578)
Q Consensus 47 ~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~------~dl~~~DGlILpGGg~~~~~~~-------~l~~~~l~~~ 112 (578)
+++|+|+.++ +..-.+..++|+++|+++.++... .++++||+|+||||.++.+.+. .+. ..+.+.
T Consensus 3 ~~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~-~~l~~~ 81 (261)
T PRK01175 3 SIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLK-AVLRKD 81 (261)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHH-HHHHHH
Confidence 4679999884 556778899999999988876532 2478899999999854322211 111 123477
Q ss_pred HHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceee-------eecCCCCCCcceeeeEEEEEcc-CCcccccC
Q 045794 113 LCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVG-------RFDSSNGFRVPQIGWNALQITK-DSEILDDV 184 (578)
Q Consensus 113 i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~-------~~~~~~~~~~~~~G~~~i~~~~-~~~l~~~l 184 (578)
|+++++.++|+||||.|+|+|+. +|++|+... .+..++..+ -.-.|..+.+.. ++++++.+
T Consensus 82 Ik~f~~~gkpVLGICnG~QlLa~----------~GlLpg~~~~~~~~~~~L~~N~s~~-f~~~~~~~~v~~~~s~~~~~~ 150 (261)
T PRK01175 82 IEEFIDEGYPIIGICNGFQVLVE----------LGLLPGFDEIAEKPEMALTVNESNR-FECRPTYLKKENRKCIFTKLL 150 (261)
T ss_pred HHHHHHCCCeEEEECHHHHHHHH----------CCCCCCCCccccCCcceEeecCCCC-eEEeeeEEEECCCCChhHhcc
Confidence 89999999999999999999998 345555100 011110111 112455666654 55666544
Q ss_pred C-C-eEEEEEeeeeeec-CCC-------CCCcEEEEe-e----------cCCc---eEEEEE--eCCEEEEeeCCcccC-
Q 045794 185 G-D-HHVYFVHSYRAMP-SDD-------NKEWVSSTC-N----------YGDN---FIASVR--RGNVHAVQFHPEKSG- 237 (578)
Q Consensus 185 ~-~-~~~~~~H~~~v~~-~~~-------~~~~~~~~~-~----------~~d~---~iegi~--~~~i~gvQFHPE~~~- 237 (578)
. . ....-.|...... .+. ....+.... + ..++ -|+|+. +++++|...|||...
T Consensus 151 ~~~~~~~piah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NPNGs~~~IAGi~~~~G~vlglMpHPEr~~~ 230 (261)
T PRK01175 151 KKDVFQVPVAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNPNGSIYNIAGITNEKGNVIGLMPHPERAFY 230 (261)
T ss_pred CCCEEEEeeEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCCCCChhhcceeECCCCCEEEEcCCHHHhhc
Confidence 4 1 2222244432221 110 111222211 1 1222 356776 479999999999742
Q ss_pred -------------cchHHHHHHHhhhc
Q 045794 238 -------------DVGLSVLRRFLHPK 251 (578)
Q Consensus 238 -------------~~~~~l~~~Fl~~~ 251 (578)
.++..||+++++..
T Consensus 231 ~~~~~~~~~~~~~~~g~~~f~~~~~~~ 257 (261)
T PRK01175 231 GYQHPYWEKEEDYGDGKIFFDSLINYL 257 (261)
T ss_pred hhhccccccccCCCchHHHHHHHHHHH
Confidence 17888999887644
|
|
| >COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-12 Score=123.16 Aligned_cols=189 Identities=22% Similarity=0.389 Sum_probs=119.7
Q ss_pred CcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCcc-CCC-CCCEEEECCCCCchHHHH--HHH-hhcHHHHHHHHHhCC
Q 045794 47 DSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTPE-DIL-NANRLIFPGVGAFAAAMD--VLN-KTGMAEALCAYIEKD 120 (578)
Q Consensus 47 ~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~~-dl~-~~DGlILpGGg~~~~~~~--~l~-~~~l~~~i~~~~~~g 120 (578)
+|+|+|+-++ ...-.....+++.+|+++..+...+ .+. ++|+|++|||-++.+.+. ++. ...+++.++++++.+
T Consensus 2 ~~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~~~~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g 81 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLLGRDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKG 81 (231)
T ss_pred CceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeecccCCCccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCC
Confidence 5789999886 4455678889999999988776544 355 699999999966655432 332 236788899999999
Q ss_pred CCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCccee--eeEEEEEcc-CCcccccCCC---eEEEEEee
Q 045794 121 RPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQI--GWNALQITK-DSEILDDVGD---HHVYFVHS 194 (578)
Q Consensus 121 ~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~--G~~~i~~~~-~~~l~~~l~~---~~~~~~H~ 194 (578)
+|+||||.|||+|.+ +|++|+..++ + ...++ -|..+++.. ++++.+.+.. +.+--.|.
T Consensus 82 ~~vLGICNGfQiL~e----------~gLlPGal~~--N----~s~~F~cr~v~l~V~~~~t~ft~~~~~g~~i~ipVAHg 145 (231)
T COG0047 82 KPVLGICNGFQILSE----------AGLLPGALTR--N----ESLRFECRWVYLRVENNNTPFTSGYEGGEVIPIPVAHG 145 (231)
T ss_pred CeEEEEcchhHHHHH----------cCcCCcceec--C----CCCceEEEEEEEEEecCCCHHHHhcCCCceEEEEEeec
Confidence 999999999999998 5688887544 1 11122 344555544 3455554442 22223444
Q ss_pred eeeecCCC-------CCCcEEE-Eee---------cCCce---EEEEE--eCCEEEEeeCCccc------CcchHHHHHH
Q 045794 195 YRAMPSDD-------NKEWVSS-TCN---------YGDNF---IASVR--RGNVHAVQFHPEKS------GDVGLSVLRR 246 (578)
Q Consensus 195 ~~v~~~~~-------~~~~~~~-~~~---------~~d~~---iegi~--~~~i~gvQFHPE~~------~~~~~~l~~~ 246 (578)
......+. ....+.. ..+ ..++. |.++. +++++|..-|||.. +.|+..||+.
T Consensus 146 EGr~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~IaGI~n~~G~V~gmMPHPERa~~~~~g~~Dg~~lF~s 225 (231)
T COG0047 146 EGRYYADDETLAELEENGQVVFRYVDNNGETEEYANPNGSVNGIAGITNEDGNVLGMMPHPERASESLLGGEDGLRLFRS 225 (231)
T ss_pred ceeEEccHHHHHHHhhCCeEEEEEecCCCceeeeeCCCCChhhceeEEcCCCCEEEecCCchhhhhcccCCchHHHHHHH
Confidence 33221111 1111211 111 22333 55665 46999999999973 2367888888
Q ss_pred Hhhhc
Q 045794 247 FLHPK 251 (578)
Q Consensus 247 Fl~~~ 251 (578)
.+.++
T Consensus 226 ~~~~~ 230 (231)
T COG0047 226 ARKYL 230 (231)
T ss_pred HHHhh
Confidence 77654
|
|
| >COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-12 Score=137.33 Aligned_cols=191 Identities=21% Similarity=0.294 Sum_probs=132.5
Q ss_pred CCcEEEEEECC-CCCHHHHHHHHHH-CCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCE
Q 045794 46 SDSVVTLLDYG-AGNVRSVRNAIRH-LGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 46 ~~~~I~vld~~-~g~~~~i~~~L~~-~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
...+|+|+.++ .+|+..+ ..|+. .++++.+++...++.++|.+||||+.++..++.++++.++.+.+.+++..+.||
T Consensus 250 ~~i~Iav~~lp~isNFtD~-dpL~~~~~v~v~~v~~~~~l~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~v 328 (486)
T COG1492 250 RAIRIAVIRLPRISNFTDF-DPLRAEPDVRVRFVKPGSDLRDADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDV 328 (486)
T ss_pred CceEEEEecCCCccccccc-hhhhcCCCeEEEEeccCCCCCCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCE
Confidence 45689999887 3455554 34444 599999999999999999999999999999999999889999999999999999
Q ss_pred EEEechHHHHhhhccc-----C--CCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeee
Q 045794 124 LGICLGLQLLFQSSEE-----N--GPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYR 196 (578)
Q Consensus 124 lGIClG~QlLa~a~~e-----~--~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~ 196 (578)
+|||+|||||+..+.+ + +...|||+++..+. |... + ....+. ... .. ......+|+.|...
T Consensus 329 iGICGG~QmLG~~i~Dp~g~Eg~~~~~~GLgLldv~T~-~~~~---K----~~~~~~--~~~-~~-~~~~~~GyEIH~G~ 396 (486)
T COG1492 329 IGICGGYQMLGRRLKDPSGIEGAKGEAEGLGLLDVETC-FAGG---K----TTRVVT--GAL-IL-SGLEVEGYEIHMGI 396 (486)
T ss_pred EEEcchHHhhhhhhcCcccccCcccccCCccceEEEEE-ecCC---c----eEEEEe--eee-ec-CCcceeEEEEEEEE
Confidence 9999999999998763 2 24679999998865 3221 0 000000 000 11 11256889999887
Q ss_pred eecCCCCCCcEEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccCC
Q 045794 197 AMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 197 v~~~~~~~~~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~ 254 (578)
+.................++.+. ..++++|+++|-=+.. ....+.|++++...
T Consensus 397 t~~~~~~~~~~~~~~~~~dG~i~--~dg~v~gTy~HGif~n---~~~~~~fl~~~~~~ 449 (486)
T COG1492 397 TNRVDDSRPFNRLGSGVEDGAIS--ADGRVFGTYLHGIFEN---DIFREAFLRELGER 449 (486)
T ss_pred EecccccccccccCCcccCcccc--cCCcEEEEEecCcccc---HHHHHHHHHHHhcc
Confidence 76533222222222121223221 2579999999977743 35678888888774
|
|
| >KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.7e-13 Score=120.25 Aligned_cols=191 Identities=22% Similarity=0.345 Sum_probs=109.3
Q ss_pred CCcEEEEEECCCCCHHHHHHHHHHCC------C--eEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHH
Q 045794 46 SDSVVTLLDYGAGNVRSVRNAIRHLG------F--GIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYI 117 (578)
Q Consensus 46 ~~~~I~vld~~~g~~~~i~~~L~~~G------v--~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~ 117 (578)
+..+|+|+.+ .|.+-.....++++- + ++..+..++|+.+||++|||||+++....-. ...++.+.+.+++
T Consensus 10 tn~VIGVLAL-QGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT~~D~aq~DaLIIPGGEST~mslia-~~tgL~d~L~~fV 87 (226)
T KOG3210|consen 10 TNVVIGVLAL-QGAFIEHVNHVEKCIVENRYEIKLSVMTVKTKNDLAQCDALIIPGGESTAMSLIA-ERTGLYDDLYAFV 87 (226)
T ss_pred cceEEeeeeh-hhHHHHHHHHHHHhhccCcceEEEEEEeecCHHHHhhCCEEEecCCchhHHHHHH-hhhhhHHHHHHHh
Confidence 3455899998 466655555555332 2 3345677899999999999999865433222 2236788888888
Q ss_pred hCC-CCEEEEechHHHHhhhcccCC-CcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCccccc-CC---CeEEEE
Q 045794 118 EKD-RPFLGICLGLQLLFQSSEENG-PVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDD-VG---DHHVYF 191 (578)
Q Consensus 118 ~~g-~PIlGIClG~QlLa~a~~e~~-~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~-l~---~~~~~~ 191 (578)
.++ +|+||.|.||.+|...+..+. ...-|++++.++++- .+|.+...++.... ++. ++ ++...+
T Consensus 88 hn~~k~~WGTCAGmI~LS~ql~nek~~~~tL~~lkv~V~RN---------~FG~QaqSFT~~~~-~snfi~~~~~FpATF 157 (226)
T KOG3210|consen 88 HNPSKVTWGTCAGMIYLSQQLSNEKKLVKTLNLLKVKVKRN---------AFGRQAQSFTRICD-FSNFIPHCNDFPATF 157 (226)
T ss_pred cCCCccceeechhhhhhhhhhcCCcchhhhhhheeEEEeec---------cccchhhhheehhc-ccccccCcccCchhh
Confidence 776 999999999999998765432 234577788887761 12222222222211 111 01 111111
Q ss_pred EeeeeeecCCCCCCcEEEEe---ecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHHHHhhh
Q 045794 192 VHSYRAMPSDDNKEWVSSTC---NYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLRRFLHP 250 (578)
Q Consensus 192 ~H~~~v~~~~~~~~~~~~~~---~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~~Fl~~ 250 (578)
...-....+-. +-.+.+.. ..++..+.+.++ .|++++.||||....| .++.++|++.
T Consensus 158 IRAPVie~ILD-~I~V~~l~~~~~nG~~~iVAa~Q~~~iL~TSFHPELa~~D-~R~HdW~ire 218 (226)
T KOG3210|consen 158 IRAPVIEEILD-PIHVQVLYKLDGNGQELIVAAKQKNNILATSFHPELAEND-IRFHDWFIRE 218 (226)
T ss_pred eechhHHHhcC-chhheEEEEecCCCcEEEEEEeccCCEeeeecChhhhccc-chHHHHHHHH
Confidence 00000000001 11111111 123455666665 7999999999997443 3677888754
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.6e-13 Score=135.50 Aligned_cols=121 Identities=19% Similarity=0.279 Sum_probs=106.7
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCC---CCCHHHHHHHHHHcCCcEEEEeccCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGR---PIGAYELAKAVEDLGAGEILLNCIDC 502 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~e~~~~~~~~G~~~ii~tdi~~ 502 (578)
.+|+++||++++ ++ +++|+..+ ..++.++++.+++.|++++.++|+++
T Consensus 4 ~~iip~iD~~~G----------------------------~~-V~~~~~~~~~~~~dp~~~a~~~~~~G~~~l~v~Dl~~ 54 (254)
T TIGR00735 4 KRIIPCLDVRDG----------------------------RV-VKGVQFLNLRDAGDPVELAQRYDEEGADELVFLDITA 54 (254)
T ss_pred CeEEEEEEeECC----------------------------EE-EEeEeecCceECCCHHHHHHHHHHcCCCEEEEEcCCc
Confidence 589999999875 34 77776432 45899999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 503 DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 503 dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.++..+.|+++++++++.+++||+++|||++.+|++++++ .||++|++|+++..++..+.++.+.+.++.|.+
T Consensus 55 ~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~-~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~ 127 (254)
T TIGR00735 55 SSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLR-AGADKVSINTAAVKNPELIYELADRFGSQCIVV 127 (254)
T ss_pred ccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCCEEEEChhHhhChHHHHHHHHHcCCCCEEE
Confidence 9999999999999999999999999999999999999996 899999999999998888888888776555543
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-12 Score=135.64 Aligned_cols=100 Identities=21% Similarity=0.202 Sum_probs=91.5
Q ss_pred ccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC-CCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHH
Q 045794 471 GGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG-FDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAA 549 (578)
Q Consensus 471 g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G-~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv 549 (578)
||.. ...+..++++.+++.|++.|.+|.+++++.++| .|++.++++++.+++|||++|||.+.+|+.++++.+||+||
T Consensus 143 G~~~-~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgV 221 (321)
T PRK10415 143 GWAP-EHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221 (321)
T ss_pred cccC-CcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEE
Confidence 4544 345788999999999999999999999999999 69999999999999999999999999999999977899999
Q ss_pred hhhhhhccCCCCHHHHHHHHHh
Q 045794 550 LAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 550 ~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
|+|+++..+++.+.++++++..
T Consensus 222 miGR~~l~nP~if~~~~~~~~~ 243 (321)
T PRK10415 222 MIGRAAQGRPWIFREIQHYLDT 243 (321)
T ss_pred EEChHhhcCChHHHHHHHHHhC
Confidence 9999999999999999998864
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=129.50 Aligned_cols=125 Identities=14% Similarity=0.174 Sum_probs=103.2
Q ss_pred CCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 425 NQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 425 ~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
..+|++|||+++++. |+. +..++|.. ..++.++++.+++.|+++++++|++++|
T Consensus 3 ~~~ii~~iD~~~g~~----------V~~--------------~~~~~~~~--~~dp~~~a~~~~~~g~~~i~i~dl~~~~ 56 (232)
T TIGR03572 3 KKRIIPCLLLKDGRL----------VKT--------------VQFKDPRY--IGDPVNAARIYNAKGADELIVLDIDASK 56 (232)
T ss_pred CceEEEEEEEECCeE----------EEe--------------eccCCCeE--CCCHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 358999999998632 111 11567764 3489999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+.+|+|+++++++++.+++||+++||+++.+|+.++++ .|+++|++|++++.++-.+.++.+.+.++.|.+
T Consensus 57 ~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~-~G~~~vilg~~~l~~~~~~~~~~~~~~~~~i~v 127 (232)
T TIGR03572 57 RGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLS-LGADKVSINTAALENPDLIEEAARRFGSQCVVV 127 (232)
T ss_pred cCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH-cCCCEEEEChhHhcCHHHHHHHHHHcCCceEEE
Confidence 99999999999999999999999999999999999985 899999999999988755666655554443443
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-12 Score=128.71 Aligned_cols=113 Identities=22% Similarity=0.308 Sum_probs=98.3
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEE--EcccccCC---CCCHHHHHHHHHHcCCcEEEEeccC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCT--VNGGREGR---PIGAYELAKAVEDLGAGEILLNCID 501 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~---~~~~~e~~~~~~~~G~~~ii~tdi~ 501 (578)
+|+.+||++++ ++. ++||++.. ..++.++++.+++.|++++.++|+
T Consensus 2 ~iip~iD~~~g----------------------------~~v~~~~G~~~~~~~~~~~~~~~a~~~~~~g~~~i~v~dl- 52 (233)
T PRK00748 2 IIIPAIDLKDG----------------------------KCVRLYQGDYDQATVYSDDPVAQAKAWEDQGAKWLHLVDL- 52 (233)
T ss_pred eEEEEEEEECC----------------------------eEEEccccccccceEecCCHHHHHHHHHHcCCCEEEEEeC-
Confidence 58999999976 333 78998875 569999999999999999999999
Q ss_pred CCCCCC--CCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 502 CDGQGK--GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 502 ~dG~~~--G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+|+.+ +.|+++++++++.+++||+++|||++.+|++++++ .||++|++|++++.++..+.++.+.+.
T Consensus 53 -d~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~-~Ga~~vilg~~~l~~~~~l~ei~~~~~ 121 (233)
T PRK00748 53 -DGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLD-AGVSRVIIGTAAVKNPELVKEACKKFP 121 (233)
T ss_pred -CccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHH-cCCCEEEECchHHhCHHHHHHHHHHhC
Confidence 55544 48999999999999999999999999999999996 899999999999988766777777663
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=122.82 Aligned_cols=198 Identities=20% Similarity=0.174 Sum_probs=136.1
Q ss_pred EEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 303 VRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 303 ~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
.....++.++|+.+.+.|+..+.+. . .+.++++++.+.+|+.. =.-+++...+-++|++.+.+++
T Consensus 19 ~~~~~~~~~~a~a~~~~G~~~~~~~---~-----------~~~i~~i~~~~~~Pil~-~~~~d~~~~~~~~~~~~~~v~~ 83 (221)
T PRK01130 19 LHSPEIMAAMALAAVQGGAVGIRAN---G-----------VEDIKAIRAVVDVPIIG-IIKRDYPDSEVYITPTLKEVDA 83 (221)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEcC---C-----------HHHHHHHHHhCCCCEEE-EEecCCCCCCceECCCHHHHHH
Confidence 3344588999999999999877751 1 46677777778899841 0112211123578888899999
Q ss_pred HHHcCcceeecchhhhccch-hhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 383 YFRSGADKISIGSDAVYAAE-DYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
+.++|||.|++.......+. +. ..++++++.+..+ +.+..++
T Consensus 84 a~~aGad~I~~d~~~~~~p~~~~-------~~~~i~~~~~~~~---i~vi~~v--------------------------- 126 (221)
T PRK01130 84 LAAAGADIIALDATLRPRPDGET-------LAELVKRIKEYPG---QLLMADC--------------------------- 126 (221)
T ss_pred HHHcCCCEEEEeCCCCCCCCCCC-------HHHHHHHHHhCCC---CeEEEeC---------------------------
Confidence 99999998888765442110 11 1255555543222 2222221
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC---CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG---QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFS 538 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG---~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~ 538 (578)
...+.++.+.+.|++.+.++.....+ ...+.++++++++++.+++||+++|||++++|+.
T Consensus 127 -----------------~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~ 189 (221)
T PRK01130 127 -----------------STLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAK 189 (221)
T ss_pred -----------------CCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHH
Confidence 12455688999999988765332222 2356689999999998899999999999999999
Q ss_pred HHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
++++ .|+++|++|+++.......+.+.+.++
T Consensus 190 ~~l~-~GadgV~iGsai~~~~~~~~~~~~~~~ 220 (221)
T PRK01130 190 KALE-LGAHAVVVGGAITRPEEITKWFVDALK 220 (221)
T ss_pred HHHH-CCCCEEEEchHhcCCHHHHHHHHHHhh
Confidence 9996 899999999999876665666555554
|
|
| >COG3442 Predicted glutamine amidotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.7e-12 Score=118.28 Aligned_cols=188 Identities=21% Similarity=0.221 Sum_probs=124.4
Q ss_pred CCCHHHHHHHHHHCCCeEEEeC--CccC--CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHH
Q 045794 57 AGNVRSVRNAIRHLGFGIKDVQ--TPED--ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQL 132 (578)
Q Consensus 57 ~g~~~~i~~~L~~~Gv~v~~v~--~~~d--l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~Ql 132 (578)
.||.-.+.+..+.+|+.+.+++ ..+. .+.||.+++.||.++.+.+..-......+.|+++++.++|+|+||.|+|+
T Consensus 20 ~GNil~Lr~ra~~rgi~v~i~~vsl~d~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~Ql 99 (250)
T COG3442 20 NGNILVLRQRAEKRGIKVEIVEVSLTDTFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQL 99 (250)
T ss_pred CCceeeehHHHHhcCCceEEEEeecCCCCCcccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhh
Confidence 4577778889999998777653 2232 35799999999876554432211123456799999999999999999999
Q ss_pred Hhhhcc--cCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcEEEE
Q 045794 133 LFQSSE--ENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSST 210 (578)
Q Consensus 133 La~a~~--e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~~~~ 210 (578)
|+++.+ .+....|+|+++..+.. ....+.+|-..++.+.....+. +...+|++|+.+....+...++-.+.
T Consensus 100 LG~yY~~a~G~ri~GlGiLd~~T~~-----~~~~R~IGdiv~~~~~~~e~~~--et~~GFENH~GrT~L~~d~~pLG~Vv 172 (250)
T COG3442 100 LGQYYETASGTRIDGLGILDHYTEN-----PQTKRFIGDIVIENTLAGEEFG--ETLVGFENHGGRTYLGPDVKPLGKVV 172 (250)
T ss_pred ccceeecCCCcEeecccceeeeecc-----ccccceeeeEEeecccchHHhC--CeeeeeecCCCceecCCCCccceeEE
Confidence 999865 33456899999887652 1234567754444332221221 25788999999887665555554444
Q ss_pred eecCC---ceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 211 CNYGD---NFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 211 ~~~~d---~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
..+++ .-.||+.+++++|++||-=.-+. +.++-++++..+-
T Consensus 173 ~G~GNn~eD~~eG~~ykn~~aTY~HGP~L~r-Np~LAd~Ll~tAl 216 (250)
T COG3442 173 YGYGNNGEDGTEGAHYKNVIATYFHGPILSR-NPELADRLLTTAL 216 (250)
T ss_pred EccCCCccccccceeeeeeEEEeecCccccC-CHHHHHHHHHHHH
Confidence 43332 23477888999999999554332 3456666665543
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-12 Score=127.92 Aligned_cols=110 Identities=17% Similarity=0.235 Sum_probs=92.4
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE--EEcccccCCC--CCHHHHHHHHHHcCCcEEEEeccCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC--TVNGGREGRP--IGAYELAKAVEDLGAGEILLNCIDC 502 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~--~~~~e~~~~~~~~G~~~ii~tdi~~ 502 (578)
+|+++||++++ +| .++||++... .++.++++.+.+. ++++++ ++.
T Consensus 3 rIip~iD~~~G----------------------------~vVr~~~G~~~~~~~~~dp~~~a~~~~~~-~~~l~i--vDl 51 (228)
T PRK04128 3 RIYPAIDLMNG----------------------------KAVRLYKGRKEEVKVYGDPVEIALRFSEY-VDKIHV--VDL 51 (228)
T ss_pred EEEEEEEeECC----------------------------EEEEEEeccccCceECCCHHHHHHHHHHh-CCEEEE--EEC
Confidence 69999999976 34 4789987654 3899999999998 999999 666
Q ss_pred CCCCCC--CCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 503 DGQGKG--FDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 503 dG~~~G--~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
||+++| +|+++++++++.+++||+++|||++.+|++++++ .|+++|++|++.+ ++--++++.+.+
T Consensus 52 dga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~-~G~~~vivGtaa~-~~~~l~~~~~~~ 118 (228)
T PRK04128 52 DGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYE-IGVENVIIGTKAF-DLEFLEKVTSEF 118 (228)
T ss_pred cchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHH-CCCCEEEECchhc-CHHHHHHHHHHc
Confidence 788777 7999999999999999999999999999999996 8999999999998 443344444443
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=129.09 Aligned_cols=166 Identities=23% Similarity=0.282 Sum_probs=126.4
Q ss_pred hccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeec--------------chhhhccchhhhhccccCCchHHH
Q 045794 352 NVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISI--------------GSDAVYAAEDYLKTGVKTGKSSLE 417 (578)
Q Consensus 352 ~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~--------------gt~~~~~~~~~~~~~~~~~~~~l~ 417 (578)
+..+-+|++|.--.. -.|.++.+-+.|++.|-| |++++++ |+.+. ++++
T Consensus 66 e~p~~vQl~gsdp~~---------l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~-p~lv~-------~iv~ 128 (323)
T COG0042 66 ERPVAVQLGGSDPEL---------LAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKN-PELLA-------EIVK 128 (323)
T ss_pred CCCEEEEecCCCHHH---------HHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCC-HHHHH-------HHHH
Confidence 344668888876533 236677777888887666 4566663 34432 4555
Q ss_pred HHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEE
Q 045794 418 QISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILL 497 (578)
Q Consensus 418 ~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~ 497 (578)
++.+..+ +|-|++-+|- ||.+. ++...++++.+++.|++.+.+
T Consensus 129 a~~~av~--~iPVTVKiRl----------------------------------G~d~~-~~~~~~ia~~~~~~g~~~ltV 171 (323)
T COG0042 129 AMVEAVG--DIPVTVKIRL----------------------------------GWDDD-DILALEIARILEDAGADALTV 171 (323)
T ss_pred HHHHhhC--CCCeEEEEec----------------------------------ccCcc-cccHHHHHHHHHhcCCCEEEE
Confidence 5555443 3455444332 33332 356789999999999999999
Q ss_pred eccCCCCCCCCC-CHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 498 NCIDCDGQGKGF-DMDLIKLISDAVS-IPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 498 tdi~~dG~~~G~-d~~li~~l~~~~~-ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
|.+++...++|+ ||+.|+++++.++ +|||++|+|.+.+|.+++++.+||||||+|++.+.+++.+.++ +++...
T Consensus 172 HgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i-~~~~~g 247 (323)
T COG0042 172 HGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI-DYLETG 247 (323)
T ss_pred ecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHH-HHhhcC
Confidence 999999999996 9999999999998 9999999999999999999989999999999999999998887 554443
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.6e-11 Score=117.35 Aligned_cols=177 Identities=15% Similarity=0.122 Sum_probs=131.4
Q ss_pred HHHHHHHHHcCCCeEEE-----EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 310 VELARQYYKEGADEISF-----LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~-----~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
++.|+.-++.||-.+++ .|+-.. +...|.+..+.|++|.+.+++||+ |+-.... +..++.+.
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~~~~~~--~~v~R~~~~~~I~~Ik~~V~iPVI---Gi~K~~~--------~~Ea~~L~ 84 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPADIRAA--GGVARMADPKMIKEIMDAVSIPVM---AKVRIGH--------FVEAQILE 84 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCchhhhhc--CCeeecCCHHHHHHHHHhCCCCeE---EeeehhH--------HHHHHHHH
Confidence 48899999999999999 455332 334677889999999999999997 5544321 67799999
Q ss_pred HcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
++|+|.|- .|. ..+|. .+++..+..+| .+-++. |
T Consensus 85 eaGvDiID-aT~-r~rP~----------~~~~~~iK~~~-~~l~MA--D------------------------------- 118 (283)
T cd04727 85 ALGVDMID-ESE-VLTPA----------DEEHHIDKHKF-KVPFVC--G------------------------------- 118 (283)
T ss_pred HcCCCEEe-ccC-CCCcH----------HHHHHHHHHHc-CCcEEc--c-------------------------------
Confidence 99999883 332 22231 26788888888 343332 3
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc--CCC---------------------------C--CCCCCCHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI--DCD---------------------------G--QGKGFDMDL 513 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi--~~d---------------------------G--~~~G~d~~l 513 (578)
++.++-+.+..+.|++.|=-|-- +.+ + ...++++++
T Consensus 119 -------------~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~el 185 (283)
T cd04727 119 -------------ARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYEL 185 (283)
T ss_pred -------------CCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHH
Confidence 34467777788888887764431 111 1 134789999
Q ss_pred HHHHHhhCCCcEE--EecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 514 IKLISDAVSIPVI--ASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 514 i~~l~~~~~ipVI--asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
++++.+..++||+ +.|||.+++++.++++ .||++|+||+++....
T Consensus 186 Lk~l~~~~~iPVV~iAeGGI~Tpena~~v~e-~GAdgVaVGSAI~~a~ 232 (283)
T cd04727 186 VKETAKLGRLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFKSE 232 (283)
T ss_pred HHHHHHhcCCCeEEEEeCCCCCHHHHHHHHH-cCCCEEEEcHHhhcCC
Confidence 9999999999997 9999999999999996 9999999999997543
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.5e-12 Score=125.85 Aligned_cols=97 Identities=21% Similarity=0.281 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 478 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 478 ~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.++.++++.+++.|++++.++|++++++.+++|+++++++++.+++||+++|||++.+|++++++ .||++|++|+.+..
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~-~Ga~~Viigt~~l~ 108 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLR-AGADKVSINSAAVA 108 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHH-cCCCEEEEChhHhh
Confidence 48999999999999999999999999999999999999999999999999999999999999996 99999999999998
Q ss_pred CCCCHHHHHHHHHhCCCe
Q 045794 558 KEVPIQSVKEHLYKEGIE 575 (578)
Q Consensus 558 ~~~~~~~~~~~l~~~~i~ 575 (578)
++..+.++.+.+.++.|-
T Consensus 109 ~p~~~~ei~~~~g~~~iv 126 (253)
T PRK02083 109 NPELISEAADRFGSQCIV 126 (253)
T ss_pred CcHHHHHHHHHcCCCCEE
Confidence 888888888877655443
|
|
| >cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.5e-11 Score=119.79 Aligned_cols=170 Identities=22% Similarity=0.349 Sum_probs=101.7
Q ss_pred ECCCCCHHHHHHHHHHCCCeEEEeCCcc------CCCCCCEEEECCCCCchHHHHH---HHhhc-HHHHHHHHHhCCCCE
Q 045794 54 DYGAGNVRSVRNAIRHLGFGIKDVQTPE------DILNANRLIFPGVGAFAAAMDV---LNKTG-MAEALCAYIEKDRPF 123 (578)
Q Consensus 54 d~~~g~~~~i~~~L~~~Gv~v~~v~~~~------dl~~~DGlILpGGg~~~~~~~~---l~~~~-l~~~i~~~~~~g~PI 123 (578)
..|+.+-.++.++|+++|+++.+++..+ ++.++|+||||||..+.+.+.. ..... +.+.++++.+.++|+
T Consensus 6 ~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pv 85 (238)
T cd01740 6 FPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLV 85 (238)
T ss_pred cCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCCeE
Confidence 3457788899999999999988876532 4678999999999654333210 11112 678899999999999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCccee---eeEEEEEcc-CCcccccC-C--CeEEEEEeeee
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQI---GWNALQITK-DSEILDDV-G--DHHVYFVHSYR 196 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~---G~~~i~~~~-~~~l~~~l-~--~~~~~~~H~~~ 196 (578)
+|||.|+|+|+. +|+++++.+..... ..... .|..+.+.. ++.+++.+ + .+.++..|...
T Consensus 86 lGIC~G~QlL~~----------~gll~g~~~~~~~~---~~~~~~~~~~v~~~v~~~~si~t~~~~~g~~l~~~vaHgeG 152 (238)
T cd01740 86 LGICNGFQILVE----------LGLLPGALIRNKGL---KFICRWQNRFVTLRVENNDSPFTKGYMEGEVLRIPVAHGEG 152 (238)
T ss_pred EEECcHHHHHHH----------cCCCccccccCCCC---ceeccccCceEEEEEcCCCCceecCCCCCCEEEEEeECCce
Confidence 999999999998 34555555432110 00000 123444433 34555542 2 35556666653
Q ss_pred eecCCC-------CCCcEEEEee-----------cCCc---eEEEEE--eCCEEEEeeCCccc
Q 045794 197 AMPSDD-------NKEWVSSTCN-----------YGDN---FIASVR--RGNVHAVQFHPEKS 236 (578)
Q Consensus 197 v~~~~~-------~~~~~~~~~~-----------~~d~---~iegi~--~~~i~gvQFHPE~~ 236 (578)
-...+. ....+..... ..++ -|+|+. +++++|...|||..
T Consensus 153 ~~~~~~~~~~~l~~~~~i~~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~GrvlglMphPer~ 215 (238)
T cd01740 153 RFYADDETLAELEENGQIAQYVDDDGNVTERYPANPNGSLDGIAGICNEDGRVLGMMPHPERA 215 (238)
T ss_pred eeEcCHHHHHHHHHCCCEEEEEcCCCCccccCCCCCCCChhcceEEEcCCCCEEEEcCChHHc
Confidence 221110 0111110100 1223 366776 47999999999985
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site |
| >KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-11 Score=126.94 Aligned_cols=84 Identities=26% Similarity=0.326 Sum_probs=57.8
Q ss_pred cEEEEEECCC---CCHHHHHHHHHHCC------CeEEEeCCc------------------cCCCCCCEEEECCCCCchHH
Q 045794 48 SVVTLLDYGA---GNVRSVRNAIRHLG------FGIKDVQTP------------------EDILNANRLIFPGVGAFAAA 100 (578)
Q Consensus 48 ~~I~vld~~~---g~~~~i~~~L~~~G------v~v~~v~~~------------------~dl~~~DGlILpGGg~~~~~ 100 (578)
.+|+++.=.. ....++.++|+.++ .++.+++.. +.+..+|||++|||-..
T Consensus 299 V~IalVGKYt~l~DsY~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~--- 375 (585)
T KOG2387|consen 299 VRIALVGKYTKLSDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGD--- 375 (585)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccc---
Confidence 5688875322 24446677777655 466666541 12577999999998311
Q ss_pred HHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhc
Q 045794 101 MDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSS 137 (578)
Q Consensus 101 ~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~ 137 (578)
...+ +....++++.++++|+||||||||+-+..+
T Consensus 376 -RGve--G~i~Aak~ARen~iP~LGiCLGmQ~AvIEf 409 (585)
T KOG2387|consen 376 -RGVE--GKILAAKWARENKIPFLGICLGMQLAVIEF 409 (585)
T ss_pred -cchh--HHHHHHHHHHhcCCCeEeeehhhhHHHHHH
Confidence 1112 567788889999999999999999987754
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.1e-10 Score=112.49 Aligned_cols=185 Identities=23% Similarity=0.229 Sum_probs=136.2
Q ss_pred cCCHHHHHHHHHHcCCCeEEE-EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISF-LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~-~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
..+|.++|+.|.+.||+.|.+ .|-+-+ +-+++.|+.+++.+.+||.. .| ||++.. .+.+..
T Consensus 69 ~~~~~~~A~~~~~~GA~aisvlte~~~f-------~g~~~~l~~v~~~v~iPvl~-------kd---fi~~~~-qi~~a~ 130 (260)
T PRK00278 69 DFDPVEIAKAYEAGGAACLSVLTDERFF-------QGSLEYLRAARAAVSLPVLR-------KD---FIIDPY-QIYEAR 130 (260)
T ss_pred CCCHHHHHHHHHhCCCeEEEEecccccC-------CCCHHHHHHHHHhcCCCEEe-------ee---ecCCHH-HHHHHH
Confidence 459999999999999999876 344433 12378888888889999973 33 899999 699999
Q ss_pred HcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
++|||.|.+....+. +..+ .++++.+ +.+|-+ ++ +|+.+
T Consensus 131 ~~GAD~VlLi~~~l~-~~~l--------~~li~~a-~~lGl~-~l--vevh~---------------------------- 169 (260)
T PRK00278 131 AAGADAILLIVAALD-DEQL--------KELLDYA-HSLGLD-VL--VEVHD---------------------------- 169 (260)
T ss_pred HcCCCEEEEEeccCC-HHHH--------HHHHHHH-HHcCCe-EE--EEeCC----------------------------
Confidence 999999999776654 2222 2455554 456733 33 33221
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~ 542 (578)
.+-++++.+.|++-|-++.++.. -..+|++...++.+.. ..|+|+.|||.+++|+.++.+
T Consensus 170 ----------------~~E~~~A~~~gadiIgin~rdl~--~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~ 231 (260)
T PRK00278 170 ----------------EEELERALKLGAPLIGINNRNLK--TFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAK 231 (260)
T ss_pred ----------------HHHHHHHHHcCCCEEEECCCCcc--cccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHH
Confidence 22335677889998888866543 3468899999988765 369999999999999999996
Q ss_pred hcCchHHhhhhhhccCCCCHHHHHHH
Q 045794 543 KTNASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
.|+++|+||+++...+.+-+.++++
T Consensus 232 -~Gad~vlVGsaI~~~~dp~~~~~~l 256 (260)
T PRK00278 232 -AGADAVLVGESLMRADDPGAALREL 256 (260)
T ss_pred -cCCCEEEECHHHcCCCCHHHHHHHH
Confidence 8999999999999777655555443
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=113.47 Aligned_cols=188 Identities=20% Similarity=0.208 Sum_probs=128.8
Q ss_pred EEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 303 VRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 303 ~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+....++.++|+.+.+.|+.-+-+ + ..+.++++++.+.+|+.. -=-+.+++.+..++++++.++.
T Consensus 23 ~~~~~~i~~~a~~~~~~G~~~~~~---~-----------~~~~~~~i~~~~~iPil~-~~~~~~~~~~~~ig~~~~~~~~ 87 (219)
T cd04729 23 LHSPEIMAAMALAAVQGGAVGIRA---N-----------GVEDIRAIRARVDLPIIG-LIKRDYPDSEVYITPTIEEVDA 87 (219)
T ss_pred cCcHHHHHHHHHHHHHCCCeEEEc---C-----------CHHHHHHHHHhCCCCEEE-EEecCCCCCCceeCCCHHHHHH
Confidence 333457889999999999975432 1 135566666667899842 0012333334567888899999
Q ss_pred HHHcCcceeecchhhhccch-hhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 383 YFRSGADKISIGSDAVYAAE-DYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
+.++||+.|++.......+. +. ..++++++.+.+ .-.+++ ++
T Consensus 88 a~~aGad~I~~~~~~~~~p~~~~-------~~~~i~~~~~~g-~~~iiv--~v--------------------------- 130 (219)
T cd04729 88 LAAAGADIIALDATDRPRPDGET-------LAELIKRIHEEY-NCLLMA--DI--------------------------- 130 (219)
T ss_pred HHHcCCCEEEEeCCCCCCCCCcC-------HHHHHHHHHHHh-CCeEEE--EC---------------------------
Confidence 99999998888754443221 01 135666665544 222222 21
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC---CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG---QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFS 538 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG---~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~ 538 (578)
...+.+..+.+.|++.+.++.....+ ...+++++.++++++.+++||++.|||++.+|+.
T Consensus 131 -----------------~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~ 193 (219)
T cd04729 131 -----------------STLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAA 193 (219)
T ss_pred -----------------CCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHH
Confidence 11345688889999988764333222 2346789999999998899999999999999999
Q ss_pred HHHHhcCchHHhhhhhhccCCC
Q 045794 539 DVFRKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~ 560 (578)
++++ .|++||++|+++.....
T Consensus 194 ~~l~-~GadgV~vGsal~~~~~ 214 (219)
T cd04729 194 KALE-LGADAVVVGSAITRPEH 214 (219)
T ss_pred HHHH-CCCCEEEEchHHhChHh
Confidence 9996 89999999999986543
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-10 Score=120.55 Aligned_cols=96 Identities=22% Similarity=0.219 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 477 PIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 477 ~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
..++.++++.+++.|++.|.+|.+++.+.+.|+ +++.++++++.+++|||++|||.+.+|+.++++..|||+|++|+++
T Consensus 146 ~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~ 225 (319)
T TIGR00737 146 HINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGA 225 (319)
T ss_pred cchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhh
Confidence 446789999999999999999998888777764 9999999999999999999999999999999976899999999999
Q ss_pred ccCCCCHHHHHHHHHhC
Q 045794 556 HRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 556 ~~~~~~~~~~~~~l~~~ 572 (578)
..+++.+.++++++...
T Consensus 226 l~~P~l~~~~~~~~~~~ 242 (319)
T TIGR00737 226 LGNPWLFRQIEQYLTTG 242 (319)
T ss_pred hhCChHHHHHHHHHhCC
Confidence 99999999998888654
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=119.85 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCC--CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGF--DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~--d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
..++++.+++.|++.|.+|..++.+.++|+ ||+.++++++.+++|||++|||.+++|+.++++.+|||+||+|+++..
T Consensus 150 ~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~ 229 (312)
T PRK10550 150 KFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALN 229 (312)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHh
Confidence 679999999999999999999998888885 899999999999999999999999999999998799999999999999
Q ss_pred CCCCHHHHHH
Q 045794 558 KEVPIQSVKE 567 (578)
Q Consensus 558 ~~~~~~~~~~ 567 (578)
+++.+.++++
T Consensus 230 nP~lf~~~~~ 239 (312)
T PRK10550 230 IPNLSRVVKY 239 (312)
T ss_pred CcHHHHHhhc
Confidence 9998887653
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-10 Score=116.45 Aligned_cols=89 Identities=28% Similarity=0.293 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCC-CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDG-QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG-~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+..++++.+++.|++.|.++..++++ ...+.+++.++++++.+++||+++|||.+++|+.++++..||++|++|+++..
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 139 ETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 57899999999999999999998776 44467999999999999999999999999999999997569999999999999
Q ss_pred CCCCHHHHHH
Q 045794 558 KEVPIQSVKE 567 (578)
Q Consensus 558 ~~~~~~~~~~ 567 (578)
+++.+..+++
T Consensus 219 ~P~~~~~~~~ 228 (231)
T cd02801 219 NPWLFREIKE 228 (231)
T ss_pred CCHHHHhhhh
Confidence 9988777654
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-10 Score=111.19 Aligned_cols=178 Identities=13% Similarity=0.114 Sum_probs=127.5
Q ss_pred HHHHHHHHcCCCeEEE-----EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 311 ELARQYYKEGADEISF-----LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~-----~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
|.|+.-++.||-.++. .|+-+. |...|.++.+.|++|.+.+.+||+ |+-.... +..++.|.+
T Consensus 21 eqa~iae~aga~avm~le~~p~d~r~~--ggv~R~~~p~~I~~I~~~V~iPVi---g~~kigh--------~~Ea~~L~~ 87 (287)
T TIGR00343 21 EQAKIAEEAGAVAVMALERVPADIRAS--GGVARMSDPKMIKEIMDAVSIPVM---AKVRIGH--------FVEAQILEA 87 (287)
T ss_pred HHHHHHHHcCceEEEeeccCchhhHhc--CCeeecCCHHHHHHHHHhCCCCEE---EEeeccH--------HHHHHHHHH
Confidence 8899999999999998 466442 335678889999999999999997 4433321 466999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|+|.|- .|.-.+ |. .+++..+..+| .. .+.-|+++
T Consensus 88 ~GvDiID-eTe~lr-Pa----------de~~~~~K~~f-~v--pfmad~~~----------------------------- 123 (287)
T TIGR00343 88 LGVDYID-ESEVLT-PA----------DWTFHIDKKKF-KV--PFVCGARD----------------------------- 123 (287)
T ss_pred cCCCEEE-ccCCCC-cH----------HHHHHHHHHHc-CC--CEEccCCC-----------------------------
Confidence 9999883 333333 31 26678888888 33 33334432
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC--------------------------------CCCCCCCHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD--------------------------------GQGKGFDMDL 513 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d--------------------------------G~~~G~d~~l 513 (578)
++-+.+..+.|++.|=-|.-.-. -...++++++
T Consensus 124 ---------------l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~el 188 (287)
T TIGR00343 124 ---------------LGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVEL 188 (287)
T ss_pred ---------------HHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHH
Confidence 33444444556655543311111 1123689999
Q ss_pred HHHHHhhCCCcEE--EecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCC
Q 045794 514 IKLISDAVSIPVI--ASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 514 i~~l~~~~~ipVI--asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~ 561 (578)
++++++..++||+ +.|||.+++|+..+++ .||+||+|||++....-+
T Consensus 189 Lkei~~~~~iPVV~fAiGGI~TPedAa~~me-lGAdGVaVGSaI~ks~dP 237 (287)
T TIGR00343 189 LLEVLKLGKLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFKSSNP 237 (287)
T ss_pred HHHHHHhCCCCEEEeccCCCCCHHHHHHHHH-cCCCEEEEhHHhhcCCCH
Confidence 9999998899998 9999999999999996 999999999999765443
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.1e-11 Score=117.19 Aligned_cols=98 Identities=27% Similarity=0.379 Sum_probs=84.8
Q ss_pred eEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH
Q 045794 269 RVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL 348 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~ 348 (578)
+++++||++ +|++. +. . ...+|.++++.|++. ++++|++|+++. +. ..+.|++++++
T Consensus 127 ~iivslD~~---~~~~~----~~-----------~-~~~~~~~~~~~~~~~-~~~li~~di~~~--G~-~~g~~~~~~~~ 183 (233)
T cd04723 127 RLVLSLDFR---GGQLL----KP-----------T-DFIGPEELLRRLAKW-PEELIVLDIDRV--GS-GQGPDLELLER 183 (233)
T ss_pred CeEEEEecc---CCeec----cc-----------c-CcCCHHHHHHHHHHh-CCeEEEEEcCcc--cc-CCCcCHHHHHH
Confidence 799999999 67532 11 1 246999999999999 999999999984 33 35889999999
Q ss_pred HhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 349 TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 349 i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+++.+++|+++||||++.+| +++++++|++.|++||++...
T Consensus 184 i~~~~~ipvi~~GGi~s~ed-----------i~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 184 LAARADIPVIAAGGVRSVED-----------LELLKKLGASGALVASALHDG 224 (233)
T ss_pred HHHhcCCCEEEeCCCCCHHH-----------HHHHHHcCCCEEEEehHHHcC
Confidence 99999999999999999977 999999999999999999874
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.8e-11 Score=124.10 Aligned_cols=87 Identities=23% Similarity=0.237 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 478 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 478 ~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
.+..++++.+++.|++.|++|.+++...++|+ ||+.++++++.+++|||++|||.+.+|+.++++.+||+|||+|+++.
T Consensus 138 ~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal 217 (309)
T PF01207_consen 138 EETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGAL 217 (309)
T ss_dssp HHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHC
T ss_pred hHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhh
Confidence 35799999999999999999999999999986 99999999999999999999999999999999878999999999999
Q ss_pred cCCCCHHH
Q 045794 557 RKEVPIQS 564 (578)
Q Consensus 557 ~~~~~~~~ 564 (578)
.+++.|.+
T Consensus 218 ~nP~lf~~ 225 (309)
T PF01207_consen 218 GNPWLFRE 225 (309)
T ss_dssp C-CCHHCH
T ss_pred hcCHHhhh
Confidence 99999885
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-09 Score=109.80 Aligned_cols=176 Identities=22% Similarity=0.382 Sum_probs=99.8
Q ss_pred CcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCC------ccCCCCCCEEEECCCCCchHHHH---HHH-----hhcHHH
Q 045794 47 DSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQT------PEDILNANRLIFPGVGAFAAAMD---VLN-----KTGMAE 111 (578)
Q Consensus 47 ~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~------~~dl~~~DGlILpGGg~~~~~~~---~l~-----~~~l~~ 111 (578)
+++|+|+-++ +..-.+...+|+..|+++..+.. ..++.++|+|+||||-++.+.+. ... ...+.+
T Consensus 1 kpkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~ 80 (259)
T PF13507_consen 1 KPKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMD 80 (259)
T ss_dssp --EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHH
Confidence 4678888654 55777899999999999887643 23689999999999965554321 111 135688
Q ss_pred HHHHHHhC-CCCEEEEechHHHHhhhcccCCCcCCCcccCc----------eeeeecCCCCCCcceeeeEEEEEccCCc-
Q 045794 112 ALCAYIEK-DRPFLGICLGLQLLFQSSEENGPVNGLGLIPG----------VVGRFDSSNGFRVPQIGWNALQITKDSE- 179 (578)
Q Consensus 112 ~i~~~~~~-g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~----------~v~~~~~~~~~~~~~~G~~~i~~~~~~~- 179 (578)
.+++++++ ++|+||||-|||+|.+ +|++|+ ..++ +. .. .-+-.|..+.+...++
T Consensus 81 ~i~~f~~~~g~~vLGIcNGfQiL~~----------~Gllp~~~~~~~~~~~~L~~--N~-s~-~fe~rwv~~~v~~~s~~ 146 (259)
T PF13507_consen 81 AIREFLERPGGFVLGICNGFQILVE----------LGLLPGGEIKDSEQSPALTP--NA-SG-RFESRWVNLVVNENSPS 146 (259)
T ss_dssp HHHHHHHCTT-EEEEECHHHHHHCC----------CCCSTT------TT--EEE----T-TS-S-EEEEEEEEE--SSTT
T ss_pred HHHHHHhcCCCeEEEEchHhHHHHH----------hCcCCCccccccCCCcEEcC--CC-CC-CeEEEEEEEEEecCCcc
Confidence 89999998 9999999999999998 456776 3222 11 11 1122466665534443
Q ss_pred -ccccCCCeEEEEEeeeeeecC-C-------CCCCcEEEEeec------------CC---ceEEEEE--eCCEEEEeeCC
Q 045794 180 -ILDDVGDHHVYFVHSYRAMPS-D-------DNKEWVSSTCNY------------GD---NFIASVR--RGNVHAVQFHP 233 (578)
Q Consensus 180 -l~~~l~~~~~~~~H~~~v~~~-~-------~~~~~~~~~~~~------------~d---~~iegi~--~~~i~gvQFHP 233 (578)
.++.+.....---|...-... + .....+...... .+ .-|+|+. +++++|...||
T Consensus 147 ~~~~~~~~~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NPNGS~~~IAGics~~GrvlglMpHP 226 (259)
T PF13507_consen 147 IFLRGLEGIVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNPNGSVNNIAGICSPDGRVLGLMPHP 226 (259)
T ss_dssp CCCTTTTCEEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSSS--GGGEEEEE-TTSSEEEESSBC
T ss_pred eecCCCCEEEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCCCCCccceeEEEcCCCCEEEEcCCh
Confidence 334444333334444332222 1 112222222111 11 3477887 47999999999
Q ss_pred ccc
Q 045794 234 EKS 236 (578)
Q Consensus 234 E~~ 236 (578)
|..
T Consensus 227 Er~ 229 (259)
T PF13507_consen 227 ERA 229 (259)
T ss_dssp CGT
T ss_pred HHh
Confidence 984
|
|
| >PRK05368 homoserine O-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-09 Score=111.43 Aligned_cols=182 Identities=13% Similarity=0.058 Sum_probs=101.2
Q ss_pred CcEEEEEECCCCCHH----HHHHHHHHCC--CeEEEeCCc-------------------cCC--CCCCEEEECCCCC---
Q 045794 47 DSVVTLLDYGAGNVR----SVRNAIRHLG--FGIKDVQTP-------------------EDI--LNANRLIFPGVGA--- 96 (578)
Q Consensus 47 ~~~I~vld~~~g~~~----~i~~~L~~~G--v~v~~v~~~-------------------~dl--~~~DGlILpGGg~--- 96 (578)
..+|+|+++ +-.+. .+.|.|.... +++.++... +++ .+|||+||+|+..
T Consensus 35 pl~i~ilNl-Mp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~ 113 (302)
T PRK05368 35 PLKILILNL-MPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQL 113 (302)
T ss_pred CccEEEEeC-CCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCc
Confidence 367999997 43333 3444454333 345544321 112 4799999999852
Q ss_pred -chHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEc
Q 045794 97 -FAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQIT 175 (578)
Q Consensus 97 -~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~ 175 (578)
+.+...|.+ +.+.+.++.+..+|+||||+|+|+++.++ .| + .+. ......+|.....++
T Consensus 114 ~fedv~YW~E---l~~i~~w~~~~~~s~LgICwGaQa~a~al------gG--i--~k~-------~~~~K~~Gv~~~~~~ 173 (302)
T PRK05368 114 PFEDVDYWDE---LKEILDWAKTHVTSTLFICWAAQAALYHL------YG--I--PKY-------TLPEKLSGVFEHRVL 173 (302)
T ss_pred cCCCCchHHH---HHHHHHHHHHcCCCEEEEcHHHHHHHHHc------CC--C--ccC-------CCCCceeEEEEEEEc
Confidence 222222322 33444444456899999999999999852 11 1 111 112235665554443
Q ss_pred -cCCcccccCC-CeEEEEEeeeeeec--CCCCCCc-EEEEeecCCceEEEEE--eCCEEEEeeCCcccCcchHHHHHHHh
Q 045794 176 -KDSEILDDVG-DHHVYFVHSYRAMP--SDDNKEW-VSSTCNYGDNFIASVR--RGNVHAVQFHPEKSGDVGLSVLRRFL 248 (578)
Q Consensus 176 -~~~~l~~~l~-~~~~~~~H~~~v~~--~~~~~~~-~~~~~~~~d~~iegi~--~~~i~gvQFHPE~~~~~~~~l~~~Fl 248 (578)
..++++++++ .+.+.+.|...+.. +...... +++.+ ...-++++. ..+++++|+|||++.. .|.+.+.
T Consensus 174 ~~~~pL~~g~~d~F~~phSr~~~V~~~~i~~~~~l~vLA~S--~~~gv~~~~~~~~r~~~vQgHPEYd~~---tL~~EY~ 248 (302)
T PRK05368 174 DPHHPLLRGFDDSFLVPHSRYTEVREEDIRAATGLEILAES--EEAGVYLFASKDKREVFVTGHPEYDAD---TLAQEYF 248 (302)
T ss_pred CCCChhhcCCCCccccceeehhhccHHHhccCCCCEEEecC--CCCCeEEEEeCCCCEEEEECCCCCCHH---HHHHHHH
Confidence 4568888877 56666666555531 2122222 22222 122245564 4479999999999653 4666666
Q ss_pred hhccCC
Q 045794 249 HPKTNI 254 (578)
Q Consensus 249 ~~~~~~ 254 (578)
+-+...
T Consensus 249 RD~~~~ 254 (302)
T PRK05368 249 RDLGAG 254 (302)
T ss_pred HHHhCC
Confidence 554433
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-10 Score=114.80 Aligned_cols=103 Identities=20% Similarity=0.199 Sum_probs=89.8
Q ss_pred eEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH
Q 045794 269 RVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL 348 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~ 348 (578)
+|+.+||.+ +|+ ++++||. +.. ..+|.++++.+.+.|+.++++.|++. +|+ ..+.|++++++
T Consensus 125 ~ivvslD~~---~g~-v~~~gw~----------~~~-~~~~~~~~~~~~~~g~~~ii~tdi~~--dGt-~~G~~~~li~~ 186 (234)
T PRK13587 125 RIYLSVDAY---GED-IKVNGWE----------EDT-ELNLFSFVRQLSDIPLGGIIYTDIAK--DGK-MSGPNFELTGQ 186 (234)
T ss_pred CEEEEEEee---CCE-EEecCCc----------ccC-CCCHHHHHHHHHHcCCCEEEEecccC--cCC-CCccCHHHHHH
Confidence 689999999 786 5789986 222 36999999999999999999999986 343 34889999999
Q ss_pred HhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 349 TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 349 i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+++.+.+|++++|||++.+| +++++++|++.|++||++.+.
T Consensus 187 l~~~~~ipvi~~GGi~s~ed-----------i~~l~~~G~~~vivG~a~~~~ 227 (234)
T PRK13587 187 LVKATTIPVIASGGIRHQQD-----------IQRLASLNVHAAIIGKAAHQA 227 (234)
T ss_pred HHHhCCCCEEEeCCCCCHHH-----------HHHHHHcCCCEEEEhHHHHhC
Confidence 99989999999999999977 999999999999999999873
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.5e-10 Score=112.76 Aligned_cols=105 Identities=18% Similarity=0.219 Sum_probs=88.1
Q ss_pred EcccccCC---CCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 045794 469 VNGGREGR---PIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTN 545 (578)
Q Consensus 469 ~~g~~~~~---~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G 545 (578)
++||++.. ..++.++++.+++.|++++.+.|.+......+.|+++++++++.+++|+.++|||++.+|++++++ .|
T Consensus 16 ~~G~~~~~~~~~~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~-~G 94 (230)
T TIGR00007 16 YQGDYDKETVYGDDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLD-LG 94 (230)
T ss_pred eccccCcceEecCCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHH-cC
Confidence 56776654 458999999999999999999888776556777999999999999999999999999999999996 99
Q ss_pred chHHhhhhhhccCCCCHHHHHHHHHhCCC
Q 045794 546 ASAALAAGIFHRKEVPIQSVKEHLYKEGI 574 (578)
Q Consensus 546 ~~gv~vgsa~~~~~~~~~~~~~~l~~~~i 574 (578)
|+++++|+++...+-.+.++.+.+..+.+
T Consensus 95 a~~vvlgs~~l~d~~~~~~~~~~~g~~~i 123 (230)
T TIGR00007 95 VDRVIIGTAAVENPDLVKELLKEYGPERI 123 (230)
T ss_pred CCEEEEChHHhhCHHHHHHHHHHhCCCcE
Confidence 99999999988765556666666554434
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.6e-10 Score=112.70 Aligned_cols=104 Identities=26% Similarity=0.349 Sum_probs=88.6
Q ss_pred eEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH
Q 045794 269 RVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL 348 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~ 348 (578)
+++|++|++ +|+| +++||..+ . ..+|+++++.+.+.|++++++.|++.. +.. .+.+++++++
T Consensus 126 ~i~~sid~~---~~~v-~~~g~~~~----------~-~~~~~~~~~~~~~~G~~~i~~~~~~~~--g~~-~g~~~~~i~~ 187 (241)
T PRK13585 126 RVMVSLDAK---DGEV-VIKGWTEK----------T-GYTPVEAAKRFEELGAGSILFTNVDVE--GLL-EGVNTEPVKE 187 (241)
T ss_pred cEEEEEEee---CCEE-EECCCccc----------C-CCCHHHHHHHHHHcCCCEEEEEeecCC--CCc-CCCCHHHHHH
Confidence 789999999 7885 57888621 1 249999999999999999999999642 222 3678999999
Q ss_pred HhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccc
Q 045794 349 TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAA 401 (578)
Q Consensus 349 i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~ 401 (578)
+++.+.+|++++|||++.+| ++++++.||+.|++||+++.++
T Consensus 188 i~~~~~iPvia~GGI~~~~d-----------i~~~~~~Ga~gv~vgsa~~~~~ 229 (241)
T PRK13585 188 LVDSVDIPVIASGGVTTLDD-----------LRALKEAGAAGVVVGSALYKGK 229 (241)
T ss_pred HHHhCCCCEEEeCCCCCHHH-----------HHHHHHcCCCEEEEEHHHhcCC
Confidence 99999999999999999977 8899999999999999999863
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.6e-10 Score=111.00 Aligned_cols=178 Identities=15% Similarity=0.136 Sum_probs=125.2
Q ss_pred HHHHHHHHcCCCeEEE-----EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 311 ELARQYYKEGADEISF-----LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~-----~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
+.|+.-++.|++++.+ -|.-. .+...+....+.|++|.+.+.+||+ |+-.... +..++.|.+
T Consensus 28 ~~a~iae~~g~~~v~~~~~~psd~~~--~gg~~Rm~~p~~I~aIk~~V~iPVi---gk~Righ--------~~Ea~~L~~ 94 (293)
T PRK04180 28 EQAKIAEEAGAVAVMALERVPADIRA--AGGVARMADPKMIEEIMDAVSIPVM---AKARIGH--------FVEAQILEA 94 (293)
T ss_pred HHHHHHHHhChHHHHHccCCCchHhh--cCCeeecCCHHHHHHHHHhCCCCeE---EeehhhH--------HHHHHHHHH
Confidence 7888888999999987 35432 2334567778999999999999998 4433321 456999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|+|.|- .|.-++ |. .+++..+..+|. +.+.-|+++
T Consensus 95 ~GvDiID-~Te~lr-pa----------d~~~~~~K~~f~---~~fmad~~~----------------------------- 130 (293)
T PRK04180 95 LGVDYID-ESEVLT-PA----------DEEYHIDKWDFT---VPFVCGARN----------------------------- 130 (293)
T ss_pred cCCCEEe-ccCCCC-ch----------HHHHHHHHHHcC---CCEEccCCC-----------------------------
Confidence 9999884 443333 31 266788888892 344445443
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe--------------------------ccCCCC-----CCCCCCHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLN--------------------------CIDCDG-----QGKGFDMDLI 514 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t--------------------------di~~dG-----~~~G~d~~li 514 (578)
++-+.+..+.|++.|=-| ..+.+. ...+++++++
T Consensus 131 ---------------l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL 195 (293)
T PRK04180 131 ---------------LGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELV 195 (293)
T ss_pred ---------------HHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHH
Confidence 333444444555544433 111111 1257899999
Q ss_pred HHHHhhCCCcEE--EecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCC
Q 045794 515 KLISDAVSIPVI--ASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 515 ~~l~~~~~ipVI--asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~ 561 (578)
+++++..++||+ +.|||.+++|+..+++ +||++|+|||++....-+
T Consensus 196 ~ei~~~~~iPVV~~AeGGI~TPedaa~vme-~GAdgVaVGSaI~ks~dP 243 (293)
T PRK04180 196 KEVAELGRLPVVNFAAGGIATPADAALMMQ-LGADGVFVGSGIFKSGDP 243 (293)
T ss_pred HHHHHhCCCCEEEEEeCCCCCHHHHHHHHH-hCCCEEEEcHHhhcCCCH
Confidence 999999899998 9999999999999996 999999999999755443
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.4e-10 Score=110.18 Aligned_cols=103 Identities=25% Similarity=0.393 Sum_probs=91.9
Q ss_pred eEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH
Q 045794 269 RVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL 348 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~ 348 (578)
||+.+||.+ +|+ ++++||+ +.+. -+|.+++++|.+.|+.++++.|++. +|.. .++|.+++++
T Consensus 124 rivv~lD~r---~g~-vav~GW~----------e~s~-~~~~~l~~~~~~~g~~~ii~TdI~~--DGtl-~G~n~~l~~~ 185 (241)
T COG0106 124 RIVVALDAR---DGK-VAVSGWQ----------EDSG-VELEELAKRLEEVGLAHILYTDISR--DGTL-SGPNVDLVKE 185 (241)
T ss_pred cEEEEEEcc---CCc-ccccccc----------cccc-CCHHHHHHHHHhcCCCeEEEEeccc--cccc-CCCCHHHHHH
Confidence 899999999 888 4999998 3332 4999999999999999999999987 4554 4899999999
Q ss_pred HhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc-Ccceeecchhhhcc
Q 045794 349 TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS-GADKISIGSDAVYA 400 (578)
Q Consensus 349 i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~-Ga~~vv~gt~~~~~ 400 (578)
+++.+.+|+++.|||+|.+| ++.+.+. |+.-+|+|++.+..
T Consensus 186 l~~~~~ipviaSGGv~s~~D-----------i~~l~~~~G~~GvIvG~ALy~g 227 (241)
T COG0106 186 LAEAVDIPVIASGGVSSLDD-----------IKALKELSGVEGVIVGRALYEG 227 (241)
T ss_pred HHHHhCcCEEEecCcCCHHH-----------HHHHHhcCCCcEEEEehHHhcC
Confidence 99999999999999999987 9999999 99999999999984
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-09 Score=112.52 Aligned_cols=84 Identities=24% Similarity=0.327 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCC--CCC-CHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCchHHhhhhh
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQG--KGF-DMDLIKLISDAVS-IPVIASSGAGAVEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~--~G~-d~~li~~l~~~~~-ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa 554 (578)
+.+++++.+++.|++.+++|.++++... .|+ ||+.|+.+++.+. +||||+|+|.+.+|+..+++.+|++|||+|++
T Consensus 156 kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arg 235 (358)
T KOG2335|consen 156 KTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARG 235 (358)
T ss_pred HHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecch
Confidence 4689999999999999999999998775 676 9999999999987 99999999999999999998899999999999
Q ss_pred hccCCCCH
Q 045794 555 FHRKEVPI 562 (578)
Q Consensus 555 ~~~~~~~~ 562 (578)
+..++..|
T Consensus 236 lL~NPa~F 243 (358)
T KOG2335|consen 236 LLYNPALF 243 (358)
T ss_pred hhcCchhh
Confidence 99998877
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.2e-10 Score=110.57 Aligned_cols=103 Identities=22% Similarity=0.208 Sum_probs=89.6
Q ss_pred eEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH
Q 045794 269 RVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL 348 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~ 348 (578)
+++.+||.+ +|+ |+++||. +.. .-+|+++++.+.+.|+.++++.|++. +|+ .+++|++++++
T Consensus 121 ~ivvslD~k---~g~-v~~~gw~----------~~~-~~~~~e~~~~~~~~g~~~ii~tdI~r--dGt-~~G~d~el~~~ 182 (241)
T PRK14114 121 EPVFSLDTR---GGK-VAFKGWL----------AEE-EIDPVSLLKRLKEYGLEEIVHTEIEK--DGT-LQEHDFSLTRK 182 (241)
T ss_pred CEEEEEEcc---CCE-EeeCCCe----------ecC-CCCHHHHHHHHHhcCCCEEEEEeech--hhc-CCCcCHHHHHH
Confidence 689999999 787 6789986 222 25999999999999999999999987 344 35899999999
Q ss_pred HhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc-----C-cceeecchhhhcc
Q 045794 349 TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS-----G-ADKISIGSDAVYA 400 (578)
Q Consensus 349 i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~-----G-a~~vv~gt~~~~~ 400 (578)
+++.+.+||+++||+++.+| ++++.++ | ++.+++|++..+.
T Consensus 183 l~~~~~~pviasGGv~s~~D-----------l~~l~~~~~~~~g~v~gvivg~Al~~g 229 (241)
T PRK14114 183 IAIEAEVKVFAAGGISSENS-----------LKTAQRVHRETNGLLKGVIVGRAFLEG 229 (241)
T ss_pred HHHHCCCCEEEECCCCCHHH-----------HHHHHhcccccCCcEEEEEEehHHHCC
Confidence 99999999999999999987 8888886 6 9999999998874
|
|
| >KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=105.17 Aligned_cols=182 Identities=23% Similarity=0.303 Sum_probs=96.4
Q ss_pred CCCcEEEEEE-------------CCCC-CHHHHHHHHHHCCCeEEEeCCc--cC-----CCCCCEEEECCCCCchHHHHH
Q 045794 45 SSDSVVTLLD-------------YGAG-NVRSVRNAIRHLGFGIKDVQTP--ED-----ILNANRLIFPGVGAFAAAMDV 103 (578)
Q Consensus 45 ~~~~~I~vld-------------~~~g-~~~~i~~~L~~~Gv~v~~v~~~--~d-----l~~~DGlILpGGg~~~~~~~~ 103 (578)
+-+|+|+|+- ++.. ..+++++.++..|++|..+... ++ ++-.+|||++||..-..+...
T Consensus 50 nykPvIGIL~hpg~g~~~rl~n~t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwak~~dY~~ 129 (340)
T KOG1559|consen 50 NYKPVIGILSHPGDGASGRLKNATGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWAKRGDYFE 129 (340)
T ss_pred ccCceeEEeccCCCCccceeccccCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcccccccHHH
Confidence 4688999983 2222 3457899999999998766543 22 567999999998422112212
Q ss_pred HHhhcHHHHHHHHHhC--CCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCC-CCCcceeeeEEEEEc----c
Q 045794 104 LNKTGMAEALCAYIEK--DRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSN-GFRVPQIGWNALQIT----K 176 (578)
Q Consensus 104 l~~~~l~~~i~~~~~~--g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~-~~~~~~~G~~~i~~~----~ 176 (578)
+.. .+.....+-.+. .+||+|||+||.+|...+.++.. ++. +|+..+ .......|-.++.-+ -
T Consensus 130 vvk-kifnk~le~nDaGehFPvyg~CLGFE~lsmiISqnrd-----ile----~~d~vd~AssLqF~~nvn~~~t~FQrF 199 (340)
T KOG1559|consen 130 VVK-KIFNKVLERNDAGEHFPVYGICLGFELLSMIISQNRD-----ILE----RFDAVDVASSLQFVGNVNIHGTMFQRF 199 (340)
T ss_pred HHH-HHHHHHHhccCCccccchhhhhhhHHHHHHHHhcChh-----HHH----hhcccccccceeeecccceeehhHhhC
Confidence 211 223333333333 39999999999999987543311 100 010000 000001111111111 0
Q ss_pred CCcccccCC-CeEEEEEeeeeeecCCCCC-----CcE-EEEee-cC--CceEEEEE--eCCEEEEeeCCccc
Q 045794 177 DSEILDDVG-DHHVYFVHSYRAMPSDDNK-----EWV-SSTCN-YG--DNFIASVR--RGNVHAVQFHPEKS 236 (578)
Q Consensus 177 ~~~l~~~l~-~~~~~~~H~~~v~~~~~~~-----~~~-~~~~~-~~--d~~iegi~--~~~i~gvQFHPE~~ 236 (578)
...+++.+. ...+.++|.+...+..... .++ ..+.. .+ ..++..++ ..|+.|+|||||..
T Consensus 200 PpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~Ls~FFnilTT~~D~~~k~fvSTv~~~kYPvtgfQWHPEKn 271 (340)
T KOG1559|consen 200 PPELLKKLSTDCLVMQNHKFGISPKNFQGNPALSSFFNILTTCTDGNSKTFVSTVESKKYPVTGFQWHPEKN 271 (340)
T ss_pred CHHHHHHhccchheeeccccccchhhccCCHHHHHHHhheeeecCCCceEEEEeecceeccceeeeecCccC
Confidence 112333333 5677889988765432111 111 12222 22 25667776 35999999999984
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=108.35 Aligned_cols=97 Identities=22% Similarity=0.266 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 477 PIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 477 ~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
..++.++++.+++.|++++.++|+++..+..+.++++++++++.+++|++++|||+++++++++++ .||+.|++|++..
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~-~Gad~vvigs~~l 106 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLD-LGVSRVIIGTAAV 106 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHH-cCCCEEEECchHH
Confidence 348999999999999999999999886566788999999999999999999999999999999996 9999999999998
Q ss_pred cCCCCHHHHHHHHHhCCC
Q 045794 557 RKEVPIQSVKEHLYKEGI 574 (578)
Q Consensus 557 ~~~~~~~~~~~~l~~~~i 574 (578)
..+..+.++.+.+.++.+
T Consensus 107 ~dp~~~~~i~~~~g~~~i 124 (234)
T cd04732 107 KNPELVKELLKEYGGERI 124 (234)
T ss_pred hChHHHHHHHHHcCCceE
Confidence 776667777776655433
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=109.09 Aligned_cols=102 Identities=32% Similarity=0.456 Sum_probs=85.0
Q ss_pred eEEEeeeEeecCCC-CEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHH
Q 045794 269 RVIACLDVRANDKG-DLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLR 347 (578)
Q Consensus 269 riIp~iDl~~~~~g-~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~ 347 (578)
+|+.++|++ +| + ++++||+ .... .+|.++++.+.+.|+.++++.|++. +|. .+++|+++++
T Consensus 123 ~ivvslD~~---~g~~-v~~~gw~----------~~~~-~~~~~~~~~~~~~g~~~ii~tdi~~--dGt-~~G~d~~~~~ 184 (229)
T PF00977_consen 123 RIVVSLDAR---DGYK-VATNGWQ----------ESSG-IDLEEFAKRLEELGAGEIILTDIDR--DGT-MQGPDLELLK 184 (229)
T ss_dssp GEEEEEEEE---ETEE-EEETTTT----------EEEE-EEHHHHHHHHHHTT-SEEEEEETTT--TTT-SSS--HHHHH
T ss_pred cEEEEEEee---eceE-EEecCcc----------ccCC-cCHHHHHHHHHhcCCcEEEEeeccc--cCC-cCCCCHHHHH
Confidence 899999999 67 5 5889997 2222 5999999999999999999999997 344 3588999999
Q ss_pred HHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhc
Q 045794 348 LTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 348 ~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
++++.+.+|++++|||++.+| ++++.+.|++.+++|++..+
T Consensus 185 ~l~~~~~~~viasGGv~~~~D-----------l~~l~~~G~~gvivg~al~~ 225 (229)
T PF00977_consen 185 QLAEAVNIPVIASGGVRSLED-----------LRELKKAGIDGVIVGSALHE 225 (229)
T ss_dssp HHHHHHSSEEEEESS--SHHH-----------HHHHHHTTECEEEESHHHHT
T ss_pred HHHHHcCCCEEEecCCCCHHH-----------HHHHHHCCCcEEEEehHhhC
Confidence 999999999999999999987 99999999999999998876
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=114.77 Aligned_cols=91 Identities=10% Similarity=0.218 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC--CCCC-------CCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC--DGQG-------KGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASA 548 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~--dG~~-------~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~g 548 (578)
++.++++.+++.|++.|++|..+. .|.. ...+++.++++++.+ ++|||++|||.+++|+.++++ +|+|
T Consensus 152 ~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~--~aDg 229 (333)
T PRK11815 152 FLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ--HVDG 229 (333)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh--cCCE
Confidence 467899999999999999997653 2211 124799999999885 899999999999999999985 6999
Q ss_pred HhhhhhhccCCCCHHHHHHHHHh
Q 045794 549 ALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 549 v~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
||+|++++.+++.+.++++++..
T Consensus 230 VmIGRa~l~nP~~~~~~~~~~~~ 252 (333)
T PRK11815 230 VMIGRAAYHNPYLLAEVDRELFG 252 (333)
T ss_pred EEEcHHHHhCCHHHHHHHHHhcC
Confidence 99999999999999999988763
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-09 Score=107.98 Aligned_cols=92 Identities=17% Similarity=0.102 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
++.++++.+.+.|++++.+.|++... ..+.|+++++++.+.+++||.++|||+|.||++++++ .||+.+.+|+++...
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~-g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~-~Ga~kvviGs~~l~~ 110 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF-GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALA-TGCARVNIGTAALEN 110 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC-CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHH-CCCCEEEECchHhCC
Confidence 89999999999999999999998763 6778999999999999999999999999999999996 999999999999988
Q ss_pred CCCHHHHHHHHHhC
Q 045794 559 EVPIQSVKEHLYKE 572 (578)
Q Consensus 559 ~~~~~~~~~~l~~~ 572 (578)
+-.+.++.+.+.++
T Consensus 111 p~l~~~i~~~~~~~ 124 (241)
T PRK14024 111 PEWCARVIAEHGDR 124 (241)
T ss_pred HHHHHHHHHHhhhh
Confidence 77777777777655
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=100.93 Aligned_cols=189 Identities=17% Similarity=0.224 Sum_probs=118.7
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcce
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~ 390 (578)
+.++.+.+.|=+|. +.|++... ..--+-|.++.+ ..|+.+-=|-.+.++ +..+-+.++.+++.
T Consensus 33 ~a~~~~~~rgr~ef-~~~~e~~~------~~i~~e~~~~~~--~~~vivnv~~~~~ee--------~~~~a~~v~~~~d~ 95 (231)
T TIGR00736 33 KASRDIEKRGRKEF-SFNLEEFN------SYIIEQIKKAES--RALVSVNVRFVDLEE--------AYDVLLTIAEHADI 95 (231)
T ss_pred HHHHHHHHcCCccc-CcCcccHH------HHHHHHHHHHhh--cCCEEEEEecCCHHH--------HHHHHHHHhcCCCE
Confidence 56678888898885 35543310 111223444533 346655444455554 33444555668888
Q ss_pred eecchhhhccchhhhhcc----ccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 391 ISIGSDAVYAAEDYLKTG----VKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 391 vv~gt~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|-|+...-.. +..+.| -..+|+.+.++.+.--.-.+-+++
T Consensus 96 IdiN~gCP~~--~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsv---------------------------------- 139 (231)
T TIGR00736 96 IEINAHCRQP--EITEIGIGQELLKNKELLKEFLTKMKELNKPIFV---------------------------------- 139 (231)
T ss_pred EEEECCCCcH--HHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEE----------------------------------
Confidence 8775443220 000000 001345566665433111122333
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVS-IPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~-ipVIasGGi~s~eDi~~l~~ 542 (578)
+++-.. .+.+..++++.+++.|++.|.++. +..| .||+.++++++.++ +|||++|||.+.+|+.+.++
T Consensus 140 -KiR~~~--~~~~~~~~a~~l~~aGad~i~Vd~-----~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~ 211 (231)
T TIGR00736 140 -KIRGNC--IPLDELIDALNLVDDGFDGIHVDA-----MYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK 211 (231)
T ss_pred -EeCCCC--CcchHHHHHHHHHHcCCCEEEEee-----CCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH
Confidence 233211 234678999999999999998853 3333 59999999999985 99999999999999999997
Q ss_pred hcCchHHhhhhhhccCCCC
Q 045794 543 KTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~~~~~ 561 (578)
+||++|++|+++..+.+.
T Consensus 212 -~GAd~VmvgR~~l~~~~~ 229 (231)
T TIGR00736 212 -AGADFVSVARAILKGNVE 229 (231)
T ss_pred -hCCCeEEEcHhhccCCcC
Confidence 999999999999888654
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.3e-09 Score=104.79 Aligned_cols=106 Identities=21% Similarity=0.213 Sum_probs=89.3
Q ss_pred eEEEeeeEeecCCCC-EEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHH
Q 045794 269 RVIACLDVRANDKGD-LVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLR 347 (578)
Q Consensus 269 riIp~iDl~~~~~g~-~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~ 347 (578)
+|+.+||.+.+ +|+ -|+++||+ +.+. -+|.+++..+.+.|+.++++.|++. +|+. .++|+++++
T Consensus 136 ~IvvsiD~k~~-~g~~~Va~~GW~----------~~t~-~~~~e~~~~~~~~g~~eii~TdI~r--DGtl-~G~d~el~~ 200 (262)
T PLN02446 136 RLVLDLSCRKK-DGRYYVVTDRWQ----------KFSD-LAVDEETLEFLAAYCDEFLVHGVDV--EGKR-LGIDEELVA 200 (262)
T ss_pred CEEEEEEEEec-CCCEEEEECCCc----------ccCC-CCHHHHHHHHHHhCCCEEEEEEEcC--CCcc-cCCCHHHHH
Confidence 79999999853 462 36999997 3332 5999999999999999999999987 4543 589999999
Q ss_pred HHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc--Ccceeecchhh--hcc
Q 045794 348 LTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS--GADKISIGSDA--VYA 400 (578)
Q Consensus 348 ~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~--Ga~~vv~gt~~--~~~ 400 (578)
++++.+.+||++.|||+|++| ++++.+. |+.-+|+|.+. ++.
T Consensus 201 ~l~~~~~ipVIASGGv~sleD-----------i~~L~~~g~g~~gvIvGkAl~~y~g 246 (262)
T PLN02446 201 LLGEHSPIPVTYAGGVRSLDD-----------LERVKVAGGGRVDVTVGSALDIFGG 246 (262)
T ss_pred HHHhhCCCCEEEECCCCCHHH-----------HHHHHHcCCCCEEEEEEeeHHHhCC
Confidence 999999999999999999987 8999987 46789999998 664
|
|
| >TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-08 Score=118.53 Aligned_cols=195 Identities=17% Similarity=0.228 Sum_probs=117.3
Q ss_pred CCCCCcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCc---------------cCCCCCCEEEECCCCCchHHH----H
Q 045794 43 ATSSDSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTP---------------EDILNANRLIFPGVGAFAAAM----D 102 (578)
Q Consensus 43 ~~~~~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~---------------~dl~~~DGlILpGGg~~~~~~----~ 102 (578)
....+|+|+|+-++ +..-....++|+.+|+++..+... .+|.++++|++|||-++.+.+ .
T Consensus 973 ~~~~kpkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~ 1052 (1239)
T TIGR01857 973 EKVEKPRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAK 1052 (1239)
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHH
Confidence 33468999999876 556678899999999887655311 247899999999996555433 1
Q ss_pred HH----HhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCc-eee-------eecCCCCCCcce-eee
Q 045794 103 VL----NKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPG-VVG-------RFDSSNGFRVPQ-IGW 169 (578)
Q Consensus 103 ~l----~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~-~v~-------~~~~~~~~~~~~-~G~ 169 (578)
|. ....+.+.++++++.+.++||||.|||+|.. +|++|+ .+. .|-.+ ...++ -.|
T Consensus 1053 ~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~----------lGLlP~~~~~~~~~~~p~l~~N--~s~rf~~r~ 1120 (1239)
T TIGR01857 1053 FIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVK----------SGLLPYGNIEAANETSPTLTYN--DINRHVSKI 1120 (1239)
T ss_pred HHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHH----------cCCCcCccccccccCCceeeec--CCCCeEEee
Confidence 21 2235778888888899999999999999998 456653 110 01111 01111 134
Q ss_pred EEEEEcc-CCcccccCC---CeEEEEEeeeeeecCCC-------CCCcEEEEe-e-----------cCCce---EEEEE-
Q 045794 170 NALQITK-DSEILDDVG---DHHVYFVHSYRAMPSDD-------NKEWVSSTC-N-----------YGDNF---IASVR- 222 (578)
Q Consensus 170 ~~i~~~~-~~~l~~~l~---~~~~~~~H~~~v~~~~~-------~~~~~~~~~-~-----------~~d~~---iegi~- 222 (578)
..+++.. .++++.++. ...+.-.|+......+. ....+.... + ..++. |+|+.
T Consensus 1121 v~~~v~~~~s~~~~~~~~g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~NPNGS~~~IaGi~s 1200 (1239)
T TIGR01857 1121 VRTRIASTNSPWLSGVSVGDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFNGKPSMDSKYNPNGSSLAIEGITS 1200 (1239)
T ss_pred eEEEECCCCChhHhcCCCCCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCCCCCCChhhhhEeEC
Confidence 5555543 456665544 23444455543221110 011111111 1 12233 55666
Q ss_pred -eCCEEEEeeCCcccCc---------chHHHHHHHhh
Q 045794 223 -RGNVHAVQFHPEKSGD---------VGLSVLRRFLH 249 (578)
Q Consensus 223 -~~~i~gvQFHPE~~~~---------~~~~l~~~Fl~ 249 (578)
+++++|..-|||.... ++..||++.++
T Consensus 1201 ~dGrvlg~MpHpER~~~~~~~~~~g~~~~~iF~~~v~ 1237 (1239)
T TIGR01857 1201 PDGRIFGKMGHSERYGDGLFKNIPGNKDQHLFASGVK 1237 (1239)
T ss_pred CCCCEEEECCCcccccCcccCCCCchhhhHHHHHHHh
Confidence 4799999999998421 34778877764
|
This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.3e-09 Score=108.37 Aligned_cols=90 Identities=6% Similarity=0.119 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC-CCCCCC--------CCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC-DGQGKG--------FDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASA 548 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~-dG~~~G--------~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~g 548 (578)
.+.++++.+++.|++.|.+|.+++ .+.++| .||+.++++++.+ ++|||++|||.+.+|+.+.+. ||+|
T Consensus 142 ~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~--g~dg 219 (318)
T TIGR00742 142 FLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS--HVDG 219 (318)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh--CCCE
Confidence 467899999999999999999986 333333 2899999998887 899999999999999999984 8999
Q ss_pred HhhhhhhccCCCCHHHHHHHHH
Q 045794 549 ALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 549 v~vgsa~~~~~~~~~~~~~~l~ 570 (578)
||||+++..++|.+.+++++|.
T Consensus 220 VMigRgal~nP~if~~~~~~l~ 241 (318)
T TIGR00742 220 VMVGREAYENPYLLANVDREIF 241 (318)
T ss_pred EEECHHHHhCCHHHHHHHHHhc
Confidence 9999999999999999998886
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.6e-09 Score=104.81 Aligned_cols=106 Identities=16% Similarity=0.078 Sum_probs=87.6
Q ss_pred eEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH
Q 045794 269 RVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL 348 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~ 348 (578)
+++.++|.+.+.++..+.++||. . + ..+|.++++.+.+.|+.++++.|++. +|+ .+++|++++++
T Consensus 123 ~ivvslD~k~~g~~~~v~~~Gw~----------~-~-~~~~~~~~~~~~~~g~~~ii~tdI~~--dGt-~~G~d~~l~~~ 187 (243)
T TIGR01919 123 IVAVGLDVLEDGEWHTLGNRGWS----------D-G-GGDLEVLERLLDSGGCSRVVVTDSKK--DGL-SGGPNELLLEV 187 (243)
T ss_pred cEEEEEEEecCCceEEEECCCee----------c-C-CCcHHHHHHHHHhCCCCEEEEEecCC--ccc-CCCcCHHHHHH
Confidence 68999999831013456889986 3 2 35999999999999999999999997 344 35899999999
Q ss_pred HhhhccccEEEeCCccccccCCCCccChHHHHHHH---HHcCcceeecchhhhcc
Q 045794 349 TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY---FRSGADKISIGSDAVYA 400 (578)
Q Consensus 349 i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~---l~~Ga~~vv~gt~~~~~ 400 (578)
+++.+.+||+++||+++.+| ++++ ...|++.+++|++..+.
T Consensus 188 l~~~~~~pviasGGv~s~eD-----------l~~l~~l~~~Gv~gvivg~Al~~g 231 (243)
T TIGR01919 188 VAARTDAIVAASGGSSLLDD-----------LRAIKYLDEGGVSVAIGGKLLYAR 231 (243)
T ss_pred HHhhCCCCEEEECCcCCHHH-----------HHHHHhhccCCeeEEEEhHHHHcC
Confidence 99999999999999999988 6555 35699999999998875
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.4e-09 Score=103.50 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=82.1
Q ss_pred EEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHH
Q 045794 270 VIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLT 349 (578)
Q Consensus 270 iIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i 349 (578)
++.+||++ +|++ +++||. .++.++.+.|.+.|+ ++.+.|++.- |+ .++.|+++++++
T Consensus 123 ~vvslD~~---~g~v-~~~g~~---------------~~~~~~~~~~~~~g~-~ii~tdI~~d--Gt-~~G~d~eli~~i 179 (221)
T TIGR00734 123 TVVSLDFK---EKFL-DASGLF---------------ESLEEVRDFLNSFDY-GLIVLDIHSV--GT-MKGPNLELLTKT 179 (221)
T ss_pred hEEEEEeE---CCcc-cccccc---------------ccHHHHHHHHHhcCC-EEEEEECCcc--cc-CCCCCHHHHHHH
Confidence 48999999 7773 456664 278899999999999 7888999873 43 458899999999
Q ss_pred hhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhc
Q 045794 350 SENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 350 ~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
++.+++|++++|||++.+| ++++++.||+.|++||+..+
T Consensus 180 ~~~~~~pvia~GGi~s~ed-----------~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 180 LELSEHPVMLGGGISGVED-----------LELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred HhhCCCCEEEeCCCCCHHH-----------HHHHHHCCCCEEEEhHHhhC
Confidence 9999999999999999987 88999999999999998876
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.6e-09 Score=102.37 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+|+++++.+.+.|++++.+.|++.. ...+.+.++++++.+....|+.++|||+|.+|++++++ .|++.|++||.....
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a-~~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~-~Ga~kvvigt~a~~~ 108 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAA-EGVGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLS-LDVNALVFSTIVFTN 108 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc-CCCcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHH-CCCCEEEECchhhCC
Confidence 8999999999999999999999866 46677999999998854459999999999999999996 899999999999888
Q ss_pred CCCHHHHHHHHHhCCCee
Q 045794 559 EVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 559 ~~~~~~~~~~l~~~~i~v 576 (578)
+-.++++.+.+.++.|-+
T Consensus 109 p~~~~~~~~~~g~~~ivv 126 (232)
T PRK13586 109 FNLFHDIVREIGSNRVLV 126 (232)
T ss_pred HHHHHHHHHHhCCCCEEE
Confidence 777778777776665543
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.7e-08 Score=92.02 Aligned_cols=186 Identities=24% Similarity=0.259 Sum_probs=127.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+++.+.++.+.+.|++.+++...+....... ....+.++.+.+..++|+.+...+.+..+.- ...++.+.++
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~ 83 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE--TDDKEVLKEVAAETDLPLGVQLAINDAAAAV------DIAAAAARAA 83 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCC--CccccHHHHHHhhcCCcEEEEEccCCchhhh------hHHHHHHHHc
Confidence 4789999999999999999987765432211 1111357777777889998888877754300 0003578889
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|+|.|.++...... +++. ++.++++.+.++...+++.+....
T Consensus 84 g~d~v~l~~~~~~~-~~~~-------~~~~~~i~~~~~~~~v~~~~~~~~------------------------------ 125 (200)
T cd04722 84 GADGVEIHGAVGYL-ARED-------LELIRELREAVPDVKVVVKLSPTG------------------------------ 125 (200)
T ss_pred CCCEEEEeccCCcH-HHHH-------HHHHHHHHHhcCCceEEEEECCCC------------------------------
Confidence 99999997665431 1111 367788888774344555443111
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCH---HHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDM---DLIKLISDAVSIPVIASSGAGAVEHFSDVFRK 543 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~---~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~ 543 (578)
... + + .+.+.|++.+.+......+.....+. ..++.++...++||+++|||.+.+++.++++
T Consensus 126 ----------~~~--~-~-~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~- 190 (200)
T cd04722 126 ----------ELA--A-A-AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALA- 190 (200)
T ss_pred ----------ccc--h-h-hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH-
Confidence 000 0 0 16788999999998877666655543 5566666777899999999999999999996
Q ss_pred cCchHHhhhh
Q 045794 544 TNASAALAAG 553 (578)
Q Consensus 544 ~G~~gv~vgs 553 (578)
.|++++++||
T Consensus 191 ~Gad~v~vgs 200 (200)
T cd04722 191 LGADGVIVGS 200 (200)
T ss_pred hCCCEEEecC
Confidence 7999999886
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.4e-08 Score=105.81 Aligned_cols=190 Identities=16% Similarity=0.149 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh--------hccccEEEeCCccccccCCCCccChHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE--------NVFVPLTVGGGIRDFTDANGRHYSSLE 378 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~--------~~~~pi~~gGGir~~~d~~~~~~~~~~ 378 (578)
.+..++.+.+.+.+...+-++|=++..-|-. .-.++++.+.. .-.-.+.+|.-|...+| .+|
T Consensus 182 ~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvI---Tr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~-------~~~ 251 (505)
T PLN02274 182 IDLEEAEAVLKDSKKGKLPLVNEDGELVDLV---TRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRES-------DKE 251 (505)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCeEEEEE---EHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCcc-------HHH
Confidence 3556788888899999999997433111111 11233333321 01235777776665433 368
Q ss_pred HHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCC
Q 045794 379 VASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPN 458 (578)
Q Consensus 379 ~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (578)
.++.|.++|+|.|+++++--.. . .+ +++++++.+.|+...|++ -
T Consensus 252 r~~~l~~ag~d~i~iD~~~g~~-~-~~-------~~~i~~ik~~~p~~~vi~-g-------------------------- 295 (505)
T PLN02274 252 RLEHLVKAGVDVVVLDSSQGDS-I-YQ-------LEMIKYIKKTYPELDVIG-G-------------------------- 295 (505)
T ss_pred HHHHHHHcCCCEEEEeCCCCCc-H-HH-------HHHHHHHHHhCCCCcEEE-e--------------------------
Confidence 8999999999999998853221 1 11 478999999996544443 1
Q ss_pred CCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCC----CCHHHHHHHHhhCCCcEEEe
Q 045794 459 GEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKG----FDMDLIKLISDAVSIPVIAS 528 (578)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G----~d~~li~~l~~~~~ipVIas 528 (578)
++...+-++.+.+.|++.|.+. ..++..+.-| ..+..+.++++..++|||+.
T Consensus 296 ------------------~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIad 357 (505)
T PLN02274 296 ------------------NVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIAD 357 (505)
T ss_pred ------------------cCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEe
Confidence 3445778999999999998762 2233322222 25667888888889999999
Q ss_pred cCCCCHHHHHHHHHhcCchHHhhhhhhccCCCC
Q 045794 529 SGAGAVEHFSDVFRKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 529 GGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~ 561 (578)
|||++..|+.+++. .||++|++|++|.....+
T Consensus 358 GGI~~~~di~kAla-~GA~~V~vGs~~~~t~Es 389 (505)
T PLN02274 358 GGISNSGHIVKALT-LGASTVMMGSFLAGTTEA 389 (505)
T ss_pred CCCCCHHHHHHHHH-cCCCEEEEchhhcccccC
Confidence 99999999999996 999999999999765443
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.1e-08 Score=101.30 Aligned_cols=185 Identities=19% Similarity=0.206 Sum_probs=123.9
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHH-HHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEV-ASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~-~~~~l~ 385 (578)
.+| ++|....+.|. +=++..... ....-.+.|+++.+.++.|+-+ +-+ +++|..+. ++.+++
T Consensus 23 s~~-~la~avs~aGg--lG~l~~~~~-----~~~~l~~~i~~~~~~t~~pfgv----n~~-----~~~~~~~~~~~~~~~ 85 (307)
T TIGR03151 23 ATG-SLAAAVSNAGG--LGIIGAGNA-----PPDVVRKEIRKVKELTDKPFGV----NIM-----LLSPFVDELVDLVIE 85 (307)
T ss_pred CCH-HHHHHHHhCCC--cceeccccC-----CHHHHHHHHHHHHHhcCCCcEE----eee-----cCCCCHHHHHHHHHh
Confidence 454 67777777764 333333211 1122235577777666777733 221 23455444 466889
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
.|++.|+++. ..+. ++++++.+ .| -+++. ++
T Consensus 86 ~~v~~v~~~~---g~p~-----------~~i~~lk~-~g-~~v~~--~v------------------------------- 116 (307)
T TIGR03151 86 EKVPVVTTGA---GNPG-----------KYIPRLKE-NG-VKVIP--VV------------------------------- 116 (307)
T ss_pred CCCCEEEEcC---CCcH-----------HHHHHHHH-cC-CEEEE--Ec-------------------------------
Confidence 9998887642 2222 35566654 34 12221 21
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC-CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG-KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~-~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
...+.++++++.|++.|+++.....|+. ..+++++++++++.+++|||++|||.+.+++.+++. .
T Consensus 117 -------------~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~-~ 182 (307)
T TIGR03151 117 -------------ASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFA-L 182 (307)
T ss_pred -------------CCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHH-c
Confidence 2257889999999999999999888874 335899999999999999999999999999999996 9
Q ss_pred CchHHhhhhhhccCCCC--HHHHHHHHHh
Q 045794 545 NASAALAAGIFHRKEVP--IQSVKEHLYK 571 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~~--~~~~~~~l~~ 571 (578)
|++||++|+.|....-. -+..|+.|.+
T Consensus 183 GA~gV~iGt~f~~t~Es~~~~~~k~~l~~ 211 (307)
T TIGR03151 183 GAEAVQMGTRFLCAKECNVHPNYKEKVLK 211 (307)
T ss_pred CCCEeecchHHhcccccCCCHHHHHHHHh
Confidence 99999999988654422 3556766644
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-07 Score=91.70 Aligned_cols=185 Identities=21% Similarity=0.161 Sum_probs=134.1
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.-||.++|+.|.+.||..|.| .-+... .+-+++.++.+++.+.+||..-..|-+..+ +.+...
T Consensus 60 ~~d~~~~A~~y~~~GA~aISV-lTe~~~-----F~Gs~~~l~~v~~~v~~PvL~KDFIid~~Q-----------I~ea~~ 122 (247)
T PRK13957 60 DYHPVQIAKTYETLGASAISV-LTDQSY-----FGGSLEDLKSVSSELKIPVLRKDFILDEIQ-----------IREARA 122 (247)
T ss_pred CCCHHHHHHHHHHCCCcEEEE-EcCCCc-----CCCCHHHHHHHHHhcCCCEEeccccCCHHH-----------HHHHHH
Confidence 359999999999999998864 333310 011367888888888999999999998754 778888
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|||-|.+=...+.. ..+ ..+-+.+..+|-+.+| -+
T Consensus 123 ~GADavLLI~~~L~~-~~l---------~~l~~~a~~lGle~LV-EV--------------------------------- 158 (247)
T PRK13957 123 FGASAILLIVRILTP-SQI---------KSFLKHASSLGMDVLV-EV--------------------------------- 158 (247)
T ss_pred cCCCEEEeEHhhCCH-HHH---------HHHHHHHHHcCCceEE-EE---------------------------------
Confidence 999999887777762 112 2234455677865332 11
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRK 543 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~ 543 (578)
+ -.+-++.+.+.|++-|-+++++.... ..|++...++.... +..+|+.+||.+++|+.++.+
T Consensus 159 ----h---------~~~El~~a~~~ga~iiGINnRdL~t~--~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~- 222 (247)
T PRK13957 159 ----H---------TEDEAKLALDCGAEIIGINTRDLDTF--QIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRK- 222 (247)
T ss_pred ----C---------CHHHHHHHHhCCCCEEEEeCCCCccc--eECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHH-
Confidence 1 13455667778999877888776522 45777777777665 467899999999999999975
Q ss_pred cCchHHhhhhhhccCCCCHHHHHHH
Q 045794 544 TNASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 544 ~G~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
. ++|++||+++...+-+-..++++
T Consensus 223 ~-~davLvG~~lm~~~d~~~~~~~l 246 (247)
T PRK13957 223 L-VDAALIGTYFMEKKDIRKAWLSL 246 (247)
T ss_pred h-CCEEEECHHHhCCCCHHHHHHHh
Confidence 5 99999999999887766555543
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.4e-07 Score=95.01 Aligned_cols=95 Identities=24% Similarity=0.284 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHcCCcEEEEeccC----------------CCCCCCCCC-----HHHHHHHHhhCCCcEEEecCCCCHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCID----------------CDGQGKGFD-----MDLIKLISDAVSIPVIASSGAGAVEHF 537 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~----------------~dG~~~G~d-----~~li~~l~~~~~ipVIasGGi~s~eDi 537 (578)
+..++++.+++.|++.|.+++.. ..|.+.|+. ++.++++++.+++|||++|||.+.+|+
T Consensus 170 ~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da 249 (300)
T TIGR01037 170 DITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDA 249 (300)
T ss_pred hHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHH
Confidence 46889999999999999986421 123345553 478889999899999999999999999
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHH----HHHhCCC
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKE----HLYKEGI 574 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~----~l~~~~i 574 (578)
.++++ .||++|++|+++...++.+..+++ +|.+.|+
T Consensus 250 ~~~l~-~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~ 289 (300)
T TIGR01037 250 LEFLM-AGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGF 289 (300)
T ss_pred HHHHH-cCCCceeecHHHhcCchHHHHHHHHHHHHHHHcCC
Confidence 99996 899999999999887777655555 4445554
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.1e-07 Score=96.64 Aligned_cols=95 Identities=26% Similarity=0.276 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC----------------CCCCCCC-----CHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC----------------DGQGKGF-----DMDLIKLISDAVSIPVIASSGAGAVEHF 537 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~----------------dG~~~G~-----d~~li~~l~~~~~ipVIasGGi~s~eDi 537 (578)
+..++++.+++.|++.|.+++... .|.++|+ .++.++++++.+++|||++|||.+.+|+
T Consensus 170 ~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da 249 (301)
T PRK07259 170 DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDA 249 (301)
T ss_pred hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 568899999999999998754221 1223443 5789999999999999999999999999
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHH----HHHhCCC
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKE----HLYKEGI 574 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~----~l~~~~i 574 (578)
.+++. .||++|++++++..++..+..+++ +|.++|.
T Consensus 250 ~~~l~-aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 250 IEFIM-AGASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHH-cCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 99996 899999999999988876665554 4455553
|
|
| >PLN03206 phosphoribosylformylglycinamidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.1e-07 Score=111.51 Aligned_cols=96 Identities=21% Similarity=0.283 Sum_probs=71.1
Q ss_pred cccCCCCCcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCc------cCCCCCCEEEECCCCCchHHHH----HH----
Q 045794 40 SIRATSSDSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTP------EDILNANRLIFPGVGAFAAAMD----VL---- 104 (578)
Q Consensus 40 ~~~~~~~~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~------~dl~~~DGlILpGGg~~~~~~~----~l---- 104 (578)
+...+..+|+|+|+-++ +..-.....+|+.+|+++..+... ..|.++++|++|||-++.+.+. |.
T Consensus 1030 ~~~~~~~~pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~ 1109 (1307)
T PLN03206 1030 KIMNATSKPKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIR 1109 (1307)
T ss_pred ccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHH
Confidence 33345678999999875 667778899999999887655432 3488999999999955444321 11
Q ss_pred HhhcHHHHHHHHH-hCCCCEEEEechHHHHhh
Q 045794 105 NKTGMAEALCAYI-EKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 105 ~~~~l~~~i~~~~-~~g~PIlGIClG~QlLa~ 135 (578)
....+.+.++++. +.+.++||||.|||+|..
T Consensus 1110 ~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~ 1141 (1307)
T PLN03206 1110 FNEPLLQQFQEFYNRPDTFSLGVCNGCQLMAL 1141 (1307)
T ss_pred hChHHHHHHHHHHhCCCceEEEEcHHHHHHHH
Confidence 1225677888888 458999999999999998
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-08 Score=109.91 Aligned_cols=97 Identities=20% Similarity=0.190 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCC---CCCCCHHHHHHHHhhCCCcEEEecCCCCH-----------HHHHHHHHhc
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQ---GKGFDMDLIKLISDAVSIPVIASSGAGAV-----------EHFSDVFRKT 544 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~---~~G~d~~li~~l~~~~~ipVIasGGi~s~-----------eDi~~l~~~~ 544 (578)
+++++++.+.+.|+++|.+.|++..-. .+.+++++++++++.+.+|+.++|||++. |+++++++ .
T Consensus 268 dPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~-~ 346 (538)
T PLN02617 268 KPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFR-S 346 (538)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHH-c
Confidence 799999999999999999999987322 34456999999999999999999999998 55899996 9
Q ss_pred CchHHhhhhhhccCC------------CCHHHHHHHHHhCCCee
Q 045794 545 NASAALAAGIFHRKE------------VPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 545 G~~gv~vgsa~~~~~------------~~~~~~~~~l~~~~i~v 576 (578)
||+.|++||++...+ -.++++.+.+.+|.|.|
T Consensus 347 GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivv 390 (538)
T PLN02617 347 GADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVV 390 (538)
T ss_pred CCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEE
Confidence 999999999888753 55777877888776655
|
|
| >TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-07 Score=112.33 Aligned_cols=182 Identities=20% Similarity=0.234 Sum_probs=108.0
Q ss_pred CCCCcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCc------cCCCCCCEEEECCCCCchHHHH----HH----Hhhc
Q 045794 44 TSSDSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTP------EDILNANRLIFPGVGAFAAAMD----VL----NKTG 108 (578)
Q Consensus 44 ~~~~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~------~dl~~~DGlILpGGg~~~~~~~----~l----~~~~ 108 (578)
+..+|+|+|+-++ +..-.....+|..+|+++..+... ..|.++++|++|||-++.+.+. |. ....
T Consensus 1052 ~~~~p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~ 1131 (1310)
T TIGR01735 1052 KGVRPKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPR 1131 (1310)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChH
Confidence 3467999999876 556678899999999887665422 2488999999999965544332 21 1235
Q ss_pred HHHHHHHHH-hCCCCEEEEechHHHHhhhcccCCCcCCCcccCceee--eecCCCCCCcceeeeEEEEEcc-CCcccccC
Q 045794 109 MAEALCAYI-EKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVG--RFDSSNGFRVPQIGWNALQITK-DSEILDDV 184 (578)
Q Consensus 109 l~~~i~~~~-~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~--~~~~~~~~~~~~~G~~~i~~~~-~~~l~~~l 184 (578)
+.+.++++. +.+.++||||.|||+|... +|++|+.-. .|-.+ ....-+-.|..+++.. .+++++++
T Consensus 1132 ~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~---------~gllp~~~~~p~l~~N-~s~~fe~r~~~~~v~~s~s~~~~~~ 1201 (1310)
T TIGR01735 1132 LRDQFQAFFKRPDTFSLGVCNGCQMLSNL---------LEWIPGTENWPHFVRN-NSERFEARVASVRVGESPSIMLRGM 1201 (1310)
T ss_pred HHHHHHHHHhCCCceEEEecHHHHHHHHH---------hCcCCCCCCCceeeec-CCCCeEEeeeEEEECCCCChhhhhc
Confidence 677888888 7889999999999999931 345543210 01111 0111112456666644 45666555
Q ss_pred C--CeEEEEEeeeeee--cCC------CCCCcEEEEe-e-----------cCCc---eEEEEE--eCCEEEEeeCCcc
Q 045794 185 G--DHHVYFVHSYRAM--PSD------DNKEWVSSTC-N-----------YGDN---FIASVR--RGNVHAVQFHPEK 235 (578)
Q Consensus 185 ~--~~~~~~~H~~~v~--~~~------~~~~~~~~~~-~-----------~~d~---~iegi~--~~~i~gvQFHPE~ 235 (578)
. ...++-.|+.... ..+ .....+.... + ..++ -|+|+. +++++|...|||.
T Consensus 1202 ~g~~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGrvl~~MpHPEr 1279 (1310)
T TIGR01735 1202 AGSRLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYPLNPNGSPGGIAGITSCDGRVTIMMPHPER 1279 (1310)
T ss_pred CCCEEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCCCCCCCChhcceEeECCCCCEEEEcCCHHH
Confidence 4 2444555644221 111 0011121111 1 1222 256776 5799999999997
|
This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-07 Score=96.28 Aligned_cols=90 Identities=23% Similarity=0.257 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC----------------CCCCCCC-----CHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC----------------DGQGKGF-----DMDLIKLISDAVSIPVIASSGAGAVEHF 537 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~----------------dG~~~G~-----d~~li~~l~~~~~ipVIasGGi~s~eDi 537 (578)
+..++++.+++.|++.|.+++... .|.+.|+ .++.++++++.+++|||++|||.+.+|+
T Consensus 167 ~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da 246 (296)
T cd04740 167 DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDA 246 (296)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 467899999999999998764321 0334444 3688999999899999999999999999
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
.++++ .||++|++++++..++..+.++++.|
T Consensus 247 ~~~l~-~GAd~V~igra~l~~p~~~~~i~~~l 277 (296)
T cd04740 247 LEFLM-AGASAVQVGTANFVDPEAFKEIIEGL 277 (296)
T ss_pred HHHHH-cCCCEEEEchhhhcChHHHHHHHHHH
Confidence 99996 99999999999998888777665544
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.6e-07 Score=87.22 Aligned_cols=171 Identities=14% Similarity=0.127 Sum_probs=122.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++++.+.+.|++-+=+. ++. ....+.|++++++...++.+| |.|-+.++ ++..++
T Consensus 22 ~~~~~~~~a~~~gGi~~iEvt-~~~--------~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~-----------~~~a~~ 81 (206)
T PRK09140 22 DEALAHVGALIEAGFRAIEIP-LNS--------PDPFDSIAALVKALGDRALIGAGTVLSPEQ-----------VDRLAD 81 (206)
T ss_pred HHHHHHHHHHHHCCCCEEEEe-CCC--------ccHHHHHHHHHHHcCCCcEEeEEecCCHHH-----------HHHHHH
Confidence 477889999999999977766 332 123578999998887678888 66777755 999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.++.+... ++++ +.+...|. -++++
T Consensus 82 aGA~fivsp~~~---------------~~v~-~~~~~~~~-~~~~G---------------------------------- 110 (206)
T PRK09140 82 AGGRLIVTPNTD---------------PEVI-RRAVALGM-VVMPG---------------------------------- 110 (206)
T ss_pred cCCCEEECCCCC---------------HHHH-HHHHHCCC-cEEcc----------------------------------
Confidence 999999997521 2333 44455542 12221
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRK 543 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~ 543 (578)
-.++ +-+.+..+.|++.+-+...+ ...++.++.+++.+ ++|+++.||| +.+.+.++++
T Consensus 111 -----------~~t~-~E~~~A~~~Gad~vk~Fpa~------~~G~~~l~~l~~~~~~~ipvvaiGGI-~~~n~~~~~~- 170 (206)
T PRK09140 111 -----------VATP-TEAFAALRAGAQALKLFPAS------QLGPAGIKALRAVLPPDVPVFAVGGV-TPENLAPYLA- 170 (206)
T ss_pred -----------cCCH-HHHHHHHHcCCCEEEECCCC------CCCHHHHHHHHhhcCCCCeEEEECCC-CHHHHHHHHH-
Confidence 1133 34677778999999875421 23478899998877 4999999999 8899999996
Q ss_pred cCchHHhhhhhhccCCCCHHHHHHH
Q 045794 544 TNASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 544 ~G~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
.|++++.++|++.......+++++.
T Consensus 171 aGa~~vav~s~l~~~~~~~~~i~~~ 195 (206)
T PRK09140 171 AGAAGFGLGSALYRPGQSAEEVAER 195 (206)
T ss_pred CCCeEEEEehHhcccccChHHHHHH
Confidence 9999999999997653334444443
|
|
| >PRK05297 phosphoribosylformylglycinamidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-07 Score=110.81 Aligned_cols=93 Identities=18% Similarity=0.270 Sum_probs=69.6
Q ss_pred CCCCcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCc------cCCCCCCEEEECCCCCchHHHH----HHHh----hc
Q 045794 44 TSSDSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTP------EDILNANRLIFPGVGAFAAAMD----VLNK----TG 108 (578)
Q Consensus 44 ~~~~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~------~dl~~~DGlILpGGg~~~~~~~----~l~~----~~ 108 (578)
++.+|+|+|+-++ +..-.....+|+.+|+++..+... ..|.++++|++|||-++.+.+. |... ..
T Consensus 1032 ~~~~pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~ 1111 (1290)
T PRK05297 1032 TGARPKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSYGDVLGAGEGWAKSILFNPR 1111 (1290)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccCCcccchHHHHHHHHhhccHH
Confidence 3467999999876 667778999999999887665422 3488999999999955544331 2221 25
Q ss_pred HHHHHHHHH-hCCCCEEEEechHHHHhhh
Q 045794 109 MAEALCAYI-EKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 109 l~~~i~~~~-~~g~PIlGIClG~QlLa~a 136 (578)
+.+.++++. +.+.++||||.|||+|...
T Consensus 1112 ~~~~~~~f~~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297 1112 LRDQFEAFFARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred HHHHHHHHHhCCCceEEEEcHHHHHHHHh
Confidence 677788866 6789999999999999983
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.9e-07 Score=94.74 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=98.2
Q ss_pred EEeCCccccccCCCCccChHHHHHHHHHcCc--ceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEecc
Q 045794 358 TVGGGIRDFTDANGRHYSSLEVASEYFRSGA--DKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPR 435 (578)
Q Consensus 358 ~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga--~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~ 435 (578)
.++.++..-++ .++.+.+++++|+ |.|+|.++--. . ..+ .++++++.+.|+..-|++ =+
T Consensus 87 ~v~~~vg~~~~-------~~~~~~~Lv~ag~~~d~i~iD~a~gh-~-~~~-------~e~I~~ir~~~p~~~vi~-g~-- 147 (326)
T PRK05458 87 IASISVGVKDD-------EYDFVDQLAAEGLTPEYITIDIAHGH-S-DSV-------INMIQHIKKHLPETFVIA-GN-- 147 (326)
T ss_pred EEEEEecCCHH-------HHHHHHHHHhcCCCCCEEEEECCCCc-h-HHH-------HHHHHHHHhhCCCCeEEE-Ee--
Confidence 46656554222 2578999999965 99999665422 1 122 278999999996443333 11
Q ss_pred ccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEec------cCCCCCCCC-
Q 045794 436 RVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNC------IDCDGQGKG- 508 (578)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~td------i~~dG~~~G- 508 (578)
+...+.++.+.+.|++.+.+.. +++..+..+
T Consensus 148 ------------------------------------------V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~ 185 (326)
T PRK05458 148 ------------------------------------------VGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGT 185 (326)
T ss_pred ------------------------------------------cCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCC
Confidence 2236788999999999987441 222222223
Q ss_pred CCHH--HHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 509 FDMD--LIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 509 ~d~~--li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+||. .++++++.+++|||+.|||.+..|+.+++. .||++|++|++|..
T Consensus 186 ~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa-~GA~aV~vG~~~~~ 235 (326)
T PRK05458 186 GGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIR-FGATMVMIGSLFAG 235 (326)
T ss_pred CccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH-hCCCEEEechhhcC
Confidence 5665 589998888999999999999999999996 89999999999973
|
|
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.8e-08 Score=95.83 Aligned_cols=77 Identities=26% Similarity=0.249 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHc-CCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKE-GADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~-g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+|.+++..-... ..- +|++||+.. +. ..|.++++++++.+ ++|+++|||||+.|+ +++++
T Consensus 132 ~~~e~~~ayA~aae~~g-~~ivyLe~S--G~---~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~-----------a~~l~ 194 (219)
T cd02812 132 LKPEDAAAYALAAEYLG-MPIVYLEYS--GA---YGPPEVVRAVKKVLGDTPLIVGGGIRSGEQ-----------AKEMA 194 (219)
T ss_pred CCHHHHHHHHHHHHHcC-CeEEEeCCC--CC---cCCHHHHHHHHHhcCCCCEEEeCCCCCHHH-----------HHHHH
Confidence 4665554443332 222 899999932 22 25689999999988 999999999999976 99999
Q ss_pred HcCcceeecchhhhcc
Q 045794 385 RSGADKISIGSDAVYA 400 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~ 400 (578)
++|||+||+||+..++
T Consensus 195 ~aGAD~VVVGsai~~~ 210 (219)
T cd02812 195 EAGADTIVVGNIVEED 210 (219)
T ss_pred HcCCCEEEECchhhCC
Confidence 9999999999999995
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.2e-07 Score=98.03 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHcCCcEEEEec---------------------cCCCCCCCCCC-----HHHHHHHHhhC---CCcEEEec
Q 045794 479 GAYELAKAVEDLGAGEILLNC---------------------IDCDGQGKGFD-----MDLIKLISDAV---SIPVIASS 529 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~td---------------------i~~dG~~~G~d-----~~li~~l~~~~---~ipVIasG 529 (578)
++.++++.+++.|++.|++++ .+..|.++|+- ++.+.++++.+ ++|||++|
T Consensus 181 ~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~G 260 (420)
T PRK08318 181 DIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIG 260 (420)
T ss_pred cHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeec
Confidence 478999999999999999532 12345566764 78999998877 79999999
Q ss_pred CCCCHHHHHHHHHhcCchHHhhhhhhcc-CCCCHHHH----HHHHHhCCC
Q 045794 530 GAGAVEHFSDVFRKTNASAALAAGIFHR-KEVPIQSV----KEHLYKEGI 574 (578)
Q Consensus 530 Gi~s~eDi~~l~~~~G~~gv~vgsa~~~-~~~~~~~~----~~~l~~~~i 574 (578)
||.+.+|+.+.+. +||++|+++|+++. ++..+.++ .++|.+.|+
T Consensus 261 GI~s~~da~e~i~-aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~ 309 (420)
T PRK08318 261 GIETWRDAAEFIL-LGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGF 309 (420)
T ss_pred CcCCHHHHHHHHH-hCCChheeeeeeccCCchhHHHHHHHHHHHHHHcCc
Confidence 9999999999996 99999999999876 66554444 455666664
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.1e-07 Score=95.25 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHcCCcEEEEec---------------------cCCCCCCCCC-C----HHHHHHHHhhC--CCcEEEecC
Q 045794 479 GAYELAKAVEDLGAGEILLNC---------------------IDCDGQGKGF-D----MDLIKLISDAV--SIPVIASSG 530 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~td---------------------i~~dG~~~G~-d----~~li~~l~~~~--~ipVIasGG 530 (578)
++.++++.+++.|++.|++++ .+..|.++|+ + ++.+.++++.+ ++|||++||
T Consensus 181 ~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GG 260 (299)
T cd02940 181 DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGG 260 (299)
T ss_pred hHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECC
Confidence 578999999999999998643 2234456664 4 79999999999 899999999
Q ss_pred CCCHHHHHHHHHhcCchHHhhhhhhcc-CCCCHHHHHH
Q 045794 531 AGAVEHFSDVFRKTNASAALAAGIFHR-KEVPIQSVKE 567 (578)
Q Consensus 531 i~s~eDi~~l~~~~G~~gv~vgsa~~~-~~~~~~~~~~ 567 (578)
|.+.+|+.+.+. +||++|+++|+++. |+-.+.++++
T Consensus 261 I~~~~da~~~l~-aGA~~V~i~ta~~~~g~~~~~~i~~ 297 (299)
T cd02940 261 IESWEDAAEFLL-LGASVVQVCTAVMNQGFTIVDDMCT 297 (299)
T ss_pred CCCHHHHHHHHH-cCCChheEceeecccCCcHHHHHhh
Confidence 999999999996 99999999999876 7766666654
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-07 Score=92.55 Aligned_cols=108 Identities=21% Similarity=0.323 Sum_probs=83.1
Q ss_pred CCcEEEEEECCC----CCHHHHHHHHHHC-CCeEEEeC-----C-ccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHH
Q 045794 46 SDSVVTLLDYGA----GNVRSVRNAIRHL-GFGIKDVQ-----T-PEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALC 114 (578)
Q Consensus 46 ~~~~I~vld~~~----g~~~~i~~~L~~~-Gv~v~~v~-----~-~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~ 114 (578)
.+++|+++-.-+ .+..++.++++.+ |+++..+. . .+.+.++|+|++|| |++...+..++..++.+.|+
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~G-G~~~~~~~~l~~~~l~~~l~ 108 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGG-GNTFNLLAQWREHGLDAILK 108 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECC-chHHHHHHHHHHcCHHHHHH
Confidence 456688875432 3456778899999 99888765 2 34578999999999 56777888888788899999
Q ss_pred HHHhCCCCEEEEechHHHHhhhcc-------cC-CCcCCCcccCceee
Q 045794 115 AYIEKDRPFLGICLGLQLLFQSSE-------EN-GPVNGLGLIPGVVG 154 (578)
Q Consensus 115 ~~~~~g~PIlGIClG~QlLa~a~~-------e~-~~~~Glgl~~~~v~ 154 (578)
++.++++|++|+|.|+|+|+..+. +. ....|||++|+.+.
T Consensus 109 ~~~~~g~~i~G~SAGa~i~~~~~~~~~~~~~e~~~~~~GLGll~~~v~ 156 (212)
T cd03146 109 AALERGVVYIGWSAGSNCWFPSIGTTDSMPIELPPSFNGLGLLPFQIC 156 (212)
T ss_pred HHHHCCCEEEEECHhHHhhCCCccccCCCCCccccccceecCcCcccc
Confidence 988899999999999999999521 22 24578888887653
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption. |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=94.87 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=76.8
Q ss_pred CH-HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 479 GA-YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 479 ~~-~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
++ ++.++.+++.|++++=+.|. ... |.++++++.+.+++||.++|||++ ++++++++ .||+.|++||++..
T Consensus 38 ~pp~~~A~~~~~~Ga~~lHvVDL-----g~~-n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l~-aGa~rVvIGS~av~ 109 (253)
T TIGR02129 38 KPSSYYAKLYKDDGVKGCHVIML-----GPN-NDDAAKEALHAYPGGLQVGGGIND-TNAQEWLD-EGASHVIVTSWLFT 109 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEC-----CCC-cHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHHH-cCCCEEEECcHHHh
Confidence 46 99999999999999999999 233 999999999999999999999997 99999996 99999999999987
Q ss_pred C----CCCHHHHHHHHHhCCCee
Q 045794 558 K----EVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 558 ~----~~~~~~~~~~l~~~~i~v 576 (578)
. +-.++++.+.+.++.|.|
T Consensus 110 ~~~i~~~~~~~i~~~fG~~~Ivv 132 (253)
T TIGR02129 110 KGKFDLKRLKEIVSLVGKDRLIV 132 (253)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEE
Confidence 6 334666666666665654
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.5e-07 Score=98.53 Aligned_cols=126 Identities=18% Similarity=0.218 Sum_probs=93.6
Q ss_pred hHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccC
Q 045794 376 SLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDL 455 (578)
Q Consensus 376 ~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~ 455 (578)
+++.++.+.++|+|.|+|.++.-. .. .+ .++++++.++|+...|++ =
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~g~-~~-~~-------~~~v~~ik~~~p~~~vi~-g----------------------- 200 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAHGH-ST-RI-------IELVKKIKTKYPNLDLIA-G----------------------- 200 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC-Ch-hH-------HHHHHHHHhhCCCCcEEE-E-----------------------
Confidence 467899999999999999876643 22 22 378899999996544433 1
Q ss_pred CCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC-------CCCC-CCHHHH---HHHHhhCCCc
Q 045794 456 GPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG-------QGKG-FDMDLI---KLISDAVSIP 524 (578)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG-------~~~G-~d~~li---~~l~~~~~ip 524 (578)
++...+.++.+.++|++.|.+ .+.... +..| |++..+ .++.+..++|
T Consensus 201 ---------------------~V~T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vp 258 (404)
T PRK06843 201 ---------------------NIVTKEAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNIC 258 (404)
T ss_pred ---------------------ecCCHHHHHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCe
Confidence 334578899999999999884 433211 1223 567655 4444456899
Q ss_pred EEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 525 VIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 525 VIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
||+.|||.+..|+.+++. +||++|++|++|..
T Consensus 259 VIAdGGI~~~~Di~KALa-lGA~aVmvGs~~ag 290 (404)
T PRK06843 259 IIADGGIRFSGDVVKAIA-AGADSVMIGNLFAG 290 (404)
T ss_pred EEEeCCCCCHHHHHHHHH-cCCCEEEEcceeee
Confidence 999999999999999996 99999999999965
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.9e-07 Score=89.23 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCCCCCC--CCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 478 IGAYELAKAVEDLGAGEILLNCIDCDGQGK--GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 478 ~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~--G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
.+..++++.+++.|++.|-+. .+.. ..|++.+++++ +++|||++|||.+.+|+.++++ .|||+|++|++
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~-----~~~~g~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~-~GaD~VmiGR~- 222 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVD-----AMDPGNHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFS-YGADMVSVARA- 222 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEEC-----cCCCCCCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHH-cCCCEEEEcCC-
Confidence 367899999999999964332 2232 45999999987 6899999999999999999996 89999999999
Q ss_pred ccCCCCHHHHH
Q 045794 556 HRKEVPIQSVK 566 (578)
Q Consensus 556 ~~~~~~~~~~~ 566 (578)
..+|.+.+++
T Consensus 223 -~~p~~~~~~~ 232 (233)
T cd02911 223 -SLPENIEWLV 232 (233)
T ss_pred -CCchHHHHhh
Confidence 7888888765
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.8e-07 Score=99.83 Aligned_cols=191 Identities=18% Similarity=0.201 Sum_probs=126.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHh-----hhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTS-----ENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~-----~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+..++.+.+.+.+...+.++|=++..-|-.. .-++++.+. +.-.-.+.+||.+..-++ +++.++
T Consensus 161 ~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT---~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~-------~~~r~~ 230 (450)
T TIGR01302 161 IDLEEALKVLHEHRIEKLPVVDKNGELVGLIT---MKDIVKRRKFPHASKDENGRLIVGAAVGTREF-------DKERAE 230 (450)
T ss_pred CcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEE---hHHhhhcccCCcceEeCCCCEEEEEEecCchh-------HHHHHH
Confidence 34567888888899999999986542111111 122232221 111235667777765333 467899
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
.+.++|++.|+|.++--. .+.. .+.++++.+.|++.-|++ +
T Consensus 231 ~L~~aG~d~I~vd~a~g~-~~~~--------~~~i~~i~~~~~~~~vi~------G------------------------ 271 (450)
T TIGR01302 231 ALVKAGVDVIVIDSSHGH-SIYV--------IDSIKEIKKTYPDLDIIA------G------------------------ 271 (450)
T ss_pred HHHHhCCCEEEEECCCCc-HhHH--------HHHHHHHHHhCCCCCEEE------E------------------------
Confidence 999999999999774432 1222 378999999996433333 1
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCC-CCHHHHHHHHh---hCCCcEEEecCC
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKG-FDMDLIKLISD---AVSIPVIASSGA 531 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G-~d~~li~~l~~---~~~ipVIasGGi 531 (578)
++...+-++.+.+.|++.|.+. ..++.-+.-| |.+.++.++++ ..++|||+.|||
T Consensus 272 ---------------~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi 336 (450)
T TIGR01302 272 ---------------NVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGI 336 (450)
T ss_pred ---------------eCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCC
Confidence 2334678889999999998653 1222222223 45666666643 458999999999
Q ss_pred CCHHHHHHHHHhcCchHHhhhhhhccCCCCH
Q 045794 532 GAVEHFSDVFRKTNASAALAAGIFHRKEVPI 562 (578)
Q Consensus 532 ~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~ 562 (578)
.+..|+.+++. .||++||+|++|.......
T Consensus 337 ~~~~di~kAla-~GA~~V~~G~~~a~~~e~p 366 (450)
T TIGR01302 337 RYSGDIVKALA-AGADAVMLGSLLAGTTESP 366 (450)
T ss_pred CCHHHHHHHHH-cCCCEEEECchhhcCCcCC
Confidence 99999999996 9999999999997655444
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.7e-06 Score=83.35 Aligned_cols=176 Identities=19% Similarity=0.213 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHH---hhhccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLT---SENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i---~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
.+..+.++...+.|++.+|+-.-+.. .......++++ +...++++.+- ++ ++.+
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------~~-----------~~~a 77 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKGLD------TRERLELARALKELCRRYGVPLIVN------DR-----------VDLA 77 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCCCC------HHHHHHHHHHHHHHHHHhCCeEEEe------Ch-----------HHHH
Confidence 35778888888999999986533321 12334444444 44457778652 22 7888
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.++|++.|.++..... ...+....+.. +.+++-+
T Consensus 78 ~~~gad~vh~~~~~~~----------------~~~~~~~~~~~-~~~g~~~----------------------------- 111 (212)
T PRK00043 78 LAVGADGVHLGQDDLP----------------VADARALLGPD-AIIGLST----------------------------- 111 (212)
T ss_pred HHcCCCEEecCcccCC----------------HHHHHHHcCCC-CEEEEeC-----------------------------
Confidence 9999999988654221 12222222222 2222211
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC----CHHHHHHHHhhCC-CcEEEecCCCCHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF----DMDLIKLISDAVS-IPVIASSGAGAVEHFS 538 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~----d~~li~~l~~~~~-ipVIasGGi~s~eDi~ 538 (578)
. + .+.+.++.+.|++.|.+..+...++..+. .++.++++++..+ +||++.||| +.+++.
T Consensus 112 -------------~-t-~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~ 175 (212)
T PRK00043 112 -------------H-T-LEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAP 175 (212)
T ss_pred -------------C-C-HHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHH
Confidence 1 2 23456666889999998766555544432 3889999988877 999999999 789999
Q ss_pred HHHHhcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
++++ .|++++++|+++...+- +.+..+.|
T Consensus 176 ~~~~-~Ga~gv~~gs~i~~~~d-~~~~~~~l 204 (212)
T PRK00043 176 EVLE-AGADGVAVVSAITGAED-PEAAARAL 204 (212)
T ss_pred HHHH-cCCCEEEEeHHhhcCCC-HHHHHHHH
Confidence 9985 99999999999986554 43333333
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-06 Score=86.85 Aligned_cols=92 Identities=23% Similarity=0.275 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 482 ELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 482 e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+.++++.+.|++.|+++.....|.... ..+++++++++.+++||+++|||.+.+++.++++ .|++||++||++...
T Consensus 113 ~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~-~GadgV~vgS~l~~~ 191 (236)
T cd04730 113 EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALA-LGADGVQMGTRFLAT 191 (236)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHH-cCCcEEEEchhhhcC
Confidence 556778889999999887755554433 2478999999888999999999999999999986 999999999998754
Q ss_pred CCC--HHHHHHHHHhCCC
Q 045794 559 EVP--IQSVKEHLYKEGI 574 (578)
Q Consensus 559 ~~~--~~~~~~~l~~~~i 574 (578)
.-. -.++|+.|.+...
T Consensus 192 ~e~~~~~~~~~~~~~~~~ 209 (236)
T cd04730 192 EESGASPAYKQALLAATA 209 (236)
T ss_pred cccCCCHHHHHHHHcCCC
Confidence 433 4577888877654
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-06 Score=92.07 Aligned_cols=91 Identities=14% Similarity=0.185 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC-------------CCCCCCC-----CHHHHHHHHhhC--CCcEEEecCCCCHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC-------------DGQGKGF-----DMDLIKLISDAV--SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~-------------dG~~~G~-----d~~li~~l~~~~--~ipVIasGGi~s~eDi~ 538 (578)
++.++++.+++.|++.|++++... .|.++|+ .++.++++++.+ ++|||++|||.+.+|+.
T Consensus 226 ~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~ 305 (344)
T PRK05286 226 ELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAY 305 (344)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence 378999999999999999987542 2344553 567889998888 79999999999999999
Q ss_pred HHHHhcCchHHhhhhhhc-cCCCCHHHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFH-RKEVPIQSVKEHLY 570 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~-~~~~~~~~~~~~l~ 570 (578)
+.+. +||++|+++|++. .|+..+.++++.|.
T Consensus 306 e~l~-aGAd~V~v~~~~~~~gP~~~~~i~~~L~ 337 (344)
T PRK05286 306 EKIR-AGASLVQIYSGLIYEGPGLVKEIVRGLA 337 (344)
T ss_pred HHHH-cCCCHHHHHHHHHHhCchHHHHHHHHHH
Confidence 9996 9999999999985 46877776666554
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.57 E-value=3e-06 Score=83.00 Aligned_cols=189 Identities=17% Similarity=0.164 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+..+.++.+.+.|++.||+.=.|+..- .+-...++.++++++....|+.++==+++. .+.++.+.++|
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~--~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~----------~~~~~~~~~~g 79 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFV--PNLTFGPPVLEALRKYTDLPIDVHLMVENP----------DRYIEDFAEAG 79 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCC--CCcccCHHHHHHHHhcCCCcEEEEeeeCCH----------HHHHHHHHHcC
Confidence 455778888889999999842333211 112345788999987666776543233332 35688888999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
++.|++--..... . .+.+ +..+++|.+ +.+.++..
T Consensus 80 adgv~vh~~~~~~---~--------~~~~-~~~~~~g~~-~~~~~~~~-------------------------------- 114 (210)
T TIGR01163 80 ADIITVHPEASEH---I--------HRLL-QLIKDLGAK-AGIVLNPA-------------------------------- 114 (210)
T ss_pred CCEEEEccCCchh---H--------HHHH-HHHHHcCCc-EEEEECCC--------------------------------
Confidence 9998884322111 1 1233 333556643 44444311
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHH---HHHHHHhhCC-----CcEEEecCCCCHHHHHH
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMD---LIKLISDAVS-----IPVIASSGAGAVEHFSD 539 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~---li~~l~~~~~-----ipVIasGGi~s~eDi~~ 539 (578)
+..+.++++.. +++.+++..+...++.+..++. .++++++.++ +|+.+.|||+ .+.+.+
T Consensus 115 -----------t~~e~~~~~~~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~ 181 (210)
T TIGR01163 115 -----------TPLEFLEYVLP-DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARE 181 (210)
T ss_pred -----------CCHHHHHHHHh-hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHH
Confidence 22555666543 5888877665443344434444 4444444332 7999999995 799999
Q ss_pred HHHhcCchHHhhhhhhccCCCCHHHHHHH
Q 045794 540 VFRKTNASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
+.+ .|++++++||+++..+ ++++..+.
T Consensus 182 l~~-~gad~iivgsai~~~~-d~~~~~~~ 208 (210)
T TIGR01163 182 LAE-AGADILVAGSAIFGAD-DYKEVIRS 208 (210)
T ss_pred HHH-cCCCEEEEChHHhCCC-CHHHHHHH
Confidence 885 9999999999998655 55544433
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-06 Score=90.39 Aligned_cols=87 Identities=24% Similarity=0.274 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCC----------------CCCCCC-----CHHHHHHHHhhC--CCcEEEecCCCCHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCD----------------GQGKGF-----DMDLIKLISDAV--SIPVIASSGAGAVE 535 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~d----------------G~~~G~-----d~~li~~l~~~~--~ipVIasGGi~s~e 535 (578)
+..++++.+++.|++.|.++..... |-+.|+ .++.++++++.+ ++|||++|||.+.+
T Consensus 177 ~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~ 256 (289)
T cd02810 177 DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGE 256 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHH
Confidence 3678999999999999998754321 112332 467889999888 89999999999999
Q ss_pred HHHHHHHhcCchHHhhhhhhccC-CCCHHHHH
Q 045794 536 HFSDVFRKTNASAALAAGIFHRK-EVPIQSVK 566 (578)
Q Consensus 536 Di~~l~~~~G~~gv~vgsa~~~~-~~~~~~~~ 566 (578)
|+.+++. .||++|++|+++... +..+.+++
T Consensus 257 da~~~l~-~GAd~V~vg~a~~~~GP~~~~~i~ 287 (289)
T cd02810 257 DVLEMLM-AGASAVQVATALMWDGPDVIRKIK 287 (289)
T ss_pred HHHHHHH-cCccHheEcHHHHhcCccHHHHHh
Confidence 9999996 999999999998765 87776655
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-06 Score=91.46 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCC-------------CCCCCC-----HHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDG-------------QGKGFD-----MDLIKLISDAVSIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG-------------~~~G~d-----~~li~~l~~~~~ipVIasGGi~s~eDi~~l 540 (578)
++.++++.+++.|++.|++++..... -++|+. ++.+.++++.+++|||++|||.+.+|+.+.
T Consensus 178 ~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~ 257 (334)
T PRK07565 178 NLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKM 257 (334)
T ss_pred hHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHH
Confidence 46899999999999999987653211 123332 466777878889999999999999999999
Q ss_pred HHhcCchHHhhhhhhcc-CCCC----HHHHHHHHHhCCC
Q 045794 541 FRKTNASAALAAGIFHR-KEVP----IQSVKEHLYKEGI 574 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~-~~~~----~~~~~~~l~~~~i 574 (578)
+. +||++|+++++++. |+-. .++++++|.+.|+
T Consensus 258 l~-aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~l~~~g~ 295 (334)
T PRK07565 258 LL-AGADVVMIASALLRHGPDYIGTILRGLEDWMERHGY 295 (334)
T ss_pred HH-cCCCceeeehHHhhhCcHHHHHHHHHHHHHHHHcCC
Confidence 96 99999999999876 4433 4566677777665
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-06 Score=81.71 Aligned_cols=158 Identities=13% Similarity=0.155 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeC-CccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGG-GIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gG-Gir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+..++++.+.+.|++.+- ++++. ....+.|+.+.+... .+.+|+ -|-+.+ .++.+++
T Consensus 16 ~~~~~~~~~l~~~G~~~ve-v~~~~--------~~~~~~i~~l~~~~~-~~~iGag~v~~~~-----------~~~~a~~ 74 (190)
T cd00452 16 EDALALAEALIEGGIRAIE-ITLRT--------PGALEAIRALRKEFP-EALIGAGTVLTPE-----------QADAAIA 74 (190)
T ss_pred HHHHHHHHHHHHCCCCEEE-EeCCC--------hhHHHHHHHHHHHCC-CCEEEEEeCCCHH-----------HHHHHHH
Confidence 4777899999999999655 44443 224678899888764 255554 455454 4999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|++.++.+... +++ .+.++++|. .+++.
T Consensus 75 ~Ga~~i~~p~~~---------------~~~-~~~~~~~~~-~~i~g---------------------------------- 103 (190)
T cd00452 75 AGAQFIVSPGLD---------------PEV-VKAANRAGI-PLLPG---------------------------------- 103 (190)
T ss_pred cCCCEEEcCCCC---------------HHH-HHHHHHcCC-cEECC----------------------------------
Confidence 999999876321 133 344566653 23331
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
++..+-+.++.+.|++.+-++..+. ...+.++.+++.. ++|+++.||| +.+.+.++++ .
T Consensus 104 ------------v~t~~e~~~A~~~Gad~i~~~p~~~------~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~-~ 163 (190)
T cd00452 104 ------------VATPTEIMQALELGADIVKLFPAEA------VGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLA-A 163 (190)
T ss_pred ------------cCCHHHHHHHHHCCCCEEEEcCCcc------cCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHH-C
Confidence 1123446677789999998854211 1456788887766 5999999999 9999999996 8
Q ss_pred CchHHhhhhhhc
Q 045794 545 NASAALAAGIFH 556 (578)
Q Consensus 545 G~~gv~vgsa~~ 556 (578)
|++++.++++++
T Consensus 164 G~~~v~v~s~i~ 175 (190)
T cd00452 164 GVVAVGGGSLLP 175 (190)
T ss_pred CCEEEEEchhcc
Confidence 999999999987
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.7e-06 Score=89.27 Aligned_cols=95 Identities=16% Similarity=0.166 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCC-------------CCCCCC-----CHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCD-------------GQGKGF-----DMDLIKLISDAVSIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~d-------------G~~~G~-----d~~li~~l~~~~~ipVIasGGi~s~eDi~~l 540 (578)
++.++++.+++.|++.|++++.... +.++|+ -++.++++++.+++|||++|||.+.+|+.+.
T Consensus 176 ~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~ 255 (325)
T cd04739 176 ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKY 255 (325)
T ss_pred CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHH
Confidence 5789999999999999998875311 223333 2467788888889999999999999999999
Q ss_pred HHhcCchHHhhhhhhcc-CCCC----HHHHHHHHHhCCC
Q 045794 541 FRKTNASAALAAGIFHR-KEVP----IQSVKEHLYKEGI 574 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~-~~~~----~~~~~~~l~~~~i 574 (578)
+. +||++|++++++.. |+.. .++++++|.+.|+
T Consensus 256 l~-aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~ 293 (325)
T cd04739 256 LL-AGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGY 293 (325)
T ss_pred HH-cCCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCC
Confidence 96 99999999999876 5543 4566777777775
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.9e-06 Score=85.33 Aligned_cols=183 Identities=24% Similarity=0.253 Sum_probs=120.7
Q ss_pred cCCHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
..||.++|+.|.+.||+.|.|+ |-.-+ +-+++.++.+++.+.+|+-- ++ ||--. -++.+..
T Consensus 67 ~~d~~~~a~~y~~~GA~aiSVlTe~~~F-------~Gs~~dL~~v~~~~~~PvL~----KD------FIid~-~QI~eA~ 128 (254)
T PF00218_consen 67 DFDPAEIAKAYEEAGAAAISVLTEPKFF-------GGSLEDLRAVRKAVDLPVLR----KD------FIIDP-YQIYEAR 128 (254)
T ss_dssp S-SHHHHHHHHHHTT-SEEEEE--SCCC-------HHHHHHHHHHHHHSSS-EEE----ES---------SH-HHHHHHH
T ss_pred cCCHHHHHHHHHhcCCCEEEEECCCCCC-------CCCHHHHHHHHHHhCCCccc----cc------CCCCH-HHHHHHH
Confidence 4699999999999999999874 54443 22477788888889999965 33 22222 3366677
Q ss_pred HcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
.+|||-|.+=...+.+. .+ ..+-+.+...|-+.+| - |
T Consensus 129 ~~GADaVLLI~~~L~~~--~l--------~~l~~~a~~lGle~lV---E------------------V------------ 165 (254)
T PF00218_consen 129 AAGADAVLLIAAILSDD--QL--------EELLELAHSLGLEALV---E------------------V------------ 165 (254)
T ss_dssp HTT-SEEEEEGGGSGHH--HH--------HHHHHHHHHTT-EEEE---E------------------E------------
T ss_pred HcCCCEeehhHHhCCHH--HH--------HHHHHHHHHcCCCeEE---E------------------E------------
Confidence 88999999877777632 22 2334555668854322 1 1
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~ 542 (578)
+ + .+-++.+.+.|++-|-+++++-.- -..|++...++.... ++-+|+.+||.+++|+..+.+
T Consensus 166 -----h--------~-~~El~~al~~~a~iiGINnRdL~t--f~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~ 229 (254)
T PF00218_consen 166 -----H--------N-EEELERALEAGADIIGINNRDLKT--FEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLAR 229 (254)
T ss_dssp -----S--------S-HHHHHHHHHTT-SEEEEESBCTTT--CCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCT
T ss_pred -----C--------C-HHHHHHHHHcCCCEEEEeCccccC--cccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHH
Confidence 1 1 334556668899988888876652 235777777777655 478999999999999999984
Q ss_pred hcCchHHhhhhhhccCCCCHHHHH
Q 045794 543 KTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
.|++|++||+++...+.+-..++
T Consensus 230 -~G~davLVGe~lm~~~d~~~~~~ 252 (254)
T PF00218_consen 230 -AGADAVLVGEALMRSPDPGEALR 252 (254)
T ss_dssp -TT-SEEEESHHHHTSSSHHHHHH
T ss_pred -CCCCEEEECHHHhCCCCHHHHHh
Confidence 99999999999998776444443
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.6e-07 Score=88.99 Aligned_cols=67 Identities=27% Similarity=0.232 Sum_probs=56.5
Q ss_pred HHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCccee
Q 045794 312 LARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKI 391 (578)
Q Consensus 312 ~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~v 391 (578)
+|..-+..|++++|+.|++++. ...+.++++++++.+++|+++|||||+.|+ ++++++.|||+|
T Consensus 139 ~a~aa~~~G~~~i~Le~~sGa~-----~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~-----------a~~l~~~GAD~V 202 (205)
T TIGR01769 139 YCLAAKYFGMKWVYLEAGSGAS-----YPVNPETISLVKKASGIPLIVGGGIRSPEI-----------AYEIVLAGADAI 202 (205)
T ss_pred HHHHHHHcCCCEEEEEcCCCCC-----CCCCHHHHHHHHHhhCCCEEEeCCCCCHHH-----------HHHHHHcCCCEE
Confidence 3344445699999999999972 134589999999999999999999999876 999999999999
Q ss_pred ecc
Q 045794 392 SIG 394 (578)
Q Consensus 392 v~g 394 (578)
|+|
T Consensus 203 VVG 205 (205)
T TIGR01769 203 VTG 205 (205)
T ss_pred EeC
Confidence 987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.46 E-value=9e-06 Score=81.10 Aligned_cols=183 Identities=15% Similarity=0.155 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+..+.++...+.|++++|+=..|+... .+..-..++++++++.+..++.+-==|.+.+| .++.++++|
T Consensus 21 ~l~~~l~~~~~~g~~~ihld~~d~~f~--~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d----------~~~~~~~~g 88 (229)
T PLN02334 21 NLAEEAKRVLDAGADWLHVDVMDGHFV--PNLTIGPPVVKALRKHTDAPLDCHLMVTNPED----------YVPDFAKAG 88 (229)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCcC--CccccCHHHHHHHHhcCCCcEEEEeccCCHHH----------HHHHHHHcC
Confidence 445677778888999999833333211 11111125667776655444433323444433 477889999
Q ss_pred cceeecchh-hhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 388 ADKISIGSD-AVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 388 a~~vv~gt~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|+.|.+--. +..+.+ .+.++++. .+|. ++-+++ ..
T Consensus 89 ad~v~vH~~q~~~d~~----------~~~~~~i~-~~g~-~iGls~--~~------------------------------ 124 (229)
T PLN02334 89 ASIFTFHIEQASTIHL----------HRLIQQIK-SAGM-KAGVVL--NP------------------------------ 124 (229)
T ss_pred CCEEEEeeccccchhH----------HHHHHHHH-HCCC-eEEEEE--CC------------------------------
Confidence 999955222 111111 13445543 3442 233332 11
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcC-CcEEEEeccCCCCCCCCC---CHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLG-AGEILLNCIDCDGQGKGF---DMDLIKLISDA-VSIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G-~~~ii~tdi~~dG~~~G~---d~~li~~l~~~-~~ipVIasGGi~s~eDi~~l~ 541 (578)
-++.+.++.+.+.| ++.|++..+....+.+.. .++.++++++. .++||.+-||| +.+.+.++.
T Consensus 125 -----------~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~ 192 (229)
T PLN02334 125 -----------GTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAA 192 (229)
T ss_pred -----------CCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHH
Confidence 13466777777764 999988877643333323 34667777665 35899999999 789999998
Q ss_pred HhcCchHHhhhhhhccCC
Q 045794 542 RKTNASAALAAGIFHRKE 559 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~ 559 (578)
+ .|++++++||++...+
T Consensus 193 ~-aGad~vvvgsai~~~~ 209 (229)
T PLN02334 193 E-AGANVIVAGSAVFGAP 209 (229)
T ss_pred H-cCCCEEEEChHHhCCC
Confidence 5 9999999999998654
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.1e-06 Score=94.89 Aligned_cols=188 Identities=18% Similarity=0.212 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh-----hccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE-----NVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~-----~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+..++++.+.+.+.+.+.++|=++..-+- -.-.++++.+.. ...-.+.+|+.|....+ +++.++
T Consensus 165 ~sl~eal~~m~~~~~~~lpVVDe~g~lvGi---IT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~-------~~e~a~ 234 (486)
T PRK05567 165 TTLEEALELLHEHRIEKLPVVDDNGRLKGL---ITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGAD-------NEERAE 234 (486)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEE---EEhHHhhhhhhCCCcccccCCCEEEEeecccCcc-------hHHHHH
Confidence 355678888899999999999865421111 111233333321 11235677888875332 478899
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
.++++|++.+++.++--. .... .+.++++.++|++--|++ +
T Consensus 235 ~L~~agvdvivvD~a~g~-~~~v--------l~~i~~i~~~~p~~~vi~------g------------------------ 275 (486)
T PRK05567 235 ALVEAGVDVLVVDTAHGH-SEGV--------LDRVREIKAKYPDVQIIA------G------------------------ 275 (486)
T ss_pred HHHHhCCCEEEEECCCCc-chhH--------HHHHHHHHhhCCCCCEEE------e------------------------
Confidence 999999998888765222 1222 367888888885333333 1
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCC-CCHHHHHHHHhh---CCCcEEEecCC
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKG-FDMDLIKLISDA---VSIPVIASSGA 531 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G-~d~~li~~l~~~---~~ipVIasGGi 531 (578)
++...+-++.+.+.|++.|.+- ..++.-+..| |+++.+.++++. .++|||+.|||
T Consensus 276 ---------------~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi 340 (486)
T PRK05567 276 ---------------NVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGI 340 (486)
T ss_pred ---------------ccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCC
Confidence 2334678888999999988641 1122212233 578888777664 47999999999
Q ss_pred CCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 532 GAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 532 ~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
++..|+.+++. +||+.||+|++|....
T Consensus 341 ~~~~di~kAla-~GA~~v~~G~~~a~~~ 367 (486)
T PRK05567 341 RYSGDIAKALA-AGASAVMLGSMLAGTE 367 (486)
T ss_pred CCHHHHHHHHH-hCCCEEEECccccccc
Confidence 99999999996 9999999999996543
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-06 Score=91.13 Aligned_cols=88 Identities=23% Similarity=0.299 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCC---------CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQG---------KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAA 549 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~---------~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv 549 (578)
+..++++.+++.|++.|-++........ .+.+++.++.+++.+++||+++||+.+.+++.++++..+||.|
T Consensus 229 e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V 308 (327)
T cd02803 229 EAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLV 308 (327)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCee
Confidence 4578899999999999988876544322 2557899999999999999999999999999999975589999
Q ss_pred hhhhhhccCCCCHHHHH
Q 045794 550 LAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 550 ~vgsa~~~~~~~~~~~~ 566 (578)
++|+++..++..+..++
T Consensus 309 ~igR~~ladP~l~~k~~ 325 (327)
T cd02803 309 ALGRALLADPDLPNKAR 325 (327)
T ss_pred eecHHHHhCccHHHHHh
Confidence 99999988876555443
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.2e-06 Score=79.86 Aligned_cols=178 Identities=17% Similarity=0.183 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhh-ccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSEN-VFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+..++++.+.+. ++.+=+ -+..... .+ ++.|+.+++. .++|+.+.+=+.+... ..++.+.++
T Consensus 14 ~~~~~~~~l~~~-i~~iei-g~~~~~~--~g----~~~i~~i~~~~~~~~i~~~~~v~~~~~---------~~~~~~~~a 76 (202)
T cd04726 14 EALELAKKVPDG-VDIIEA-GTPLIKS--EG----MEAVRALREAFPDKIIVADLKTADAGA---------LEAEMAFKA 76 (202)
T ss_pred HHHHHHHHhhhc-CCEEEc-CCHHHHH--hC----HHHHHHHHHHCCCCEEEEEEEeccccH---------HHHHHHHhc
Confidence 566788887766 554332 1111111 11 5778888876 3677765544554421 337889999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|++.+++-.....+ .. .++++. ++++|- ++++.+- .
T Consensus 77 Gad~i~~h~~~~~~---~~-------~~~i~~-~~~~g~-~~~v~~~--~------------------------------ 112 (202)
T cd04726 77 GADIVTVLGAAPLS---TI-------KKAVKA-AKKYGK-EVQVDLI--G------------------------------ 112 (202)
T ss_pred CCCEEEEEeeCCHH---HH-------HHHHHH-HHHcCC-eEEEEEe--C------------------------------
Confidence 99999985433211 11 133443 455663 2332211 0
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC-CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG-KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTN 545 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~-~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G 545 (578)
.-++.+..+ +.+.|++.+.++-....++. .....+.++++.+..++|+++.|||+ ++++.++++ .|
T Consensus 113 ----------~~t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~-~~~i~~~~~-~G 179 (202)
T cd04726 113 ----------VEDPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGIT-PDTLPEFKK-AG 179 (202)
T ss_pred ----------CCCHHHHHH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcC-HHHHHHHHh-cC
Confidence 124556665 77889998887432222333 23457888888876789999999995 999999985 89
Q ss_pred chHHhhhhhhccCC
Q 045794 546 ASAALAAGIFHRKE 559 (578)
Q Consensus 546 ~~gv~vgsa~~~~~ 559 (578)
++++++||++....
T Consensus 180 ad~vvvGsai~~~~ 193 (202)
T cd04726 180 ADIVIVGRAITGAA 193 (202)
T ss_pred CCEEEEeehhcCCC
Confidence 99999999997644
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.6e-06 Score=81.56 Aligned_cols=188 Identities=24% Similarity=0.271 Sum_probs=131.6
Q ss_pred EEecCCHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 303 VRNLGKPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 303 ~~~~~~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+...||+++|+.|.+.||..|.|+ |=.-+++ +.+.++.+++.+.+||-.-==|-+ .-.+.
T Consensus 62 ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~G-------s~e~L~~v~~~v~~PvL~KDFiiD-----------~yQI~ 123 (254)
T COG0134 62 IREDFDPVEIAKAYEEGGAAAISVLTDPKYFQG-------SFEDLRAVRAAVDLPVLRKDFIID-----------PYQIY 123 (254)
T ss_pred ccccCCHHHHHHHHHHhCCeEEEEecCccccCC-------CHHHHHHHHHhcCCCeeeccCCCC-----------HHHHH
Confidence 4445799999999999999999875 4444322 267788888899999953222222 24477
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
+...+|||.|-+=...+.+. .+ +-+-+.+..+|-+ +.+.+.
T Consensus 124 ~Ar~~GADavLLI~~~L~~~-~l---------~el~~~A~~LGm~-~LVEVh---------------------------- 164 (254)
T COG0134 124 EARAAGADAVLLIVAALDDE-QL---------EELVDRAHELGME-VLVEVH---------------------------- 164 (254)
T ss_pred HHHHcCcccHHHHHHhcCHH-HH---------HHHHHHHHHcCCe-eEEEEC----------------------------
Confidence 88889999988866667642 12 2233445667754 222221
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHH
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~ 539 (578)
+ .+-++++.+.|+.-|=+++++-.. --.|++...+++... +.-+|...||.+++|+.+
T Consensus 165 -----------------~-~eEl~rAl~~ga~iIGINnRdL~t--f~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~ 224 (254)
T COG0134 165 -----------------N-EEELERALKLGAKIIGINNRDLTT--LEVDLETTEKLAPLIPKDVILISESGISTPEDVRR 224 (254)
T ss_pred -----------------C-HHHHHHHHhCCCCEEEEeCCCcch--heecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHH
Confidence 1 344555566999877788776542 235778888887765 367899999999999999
Q ss_pred HHHhcCchHHhhhhhhccCCCCHHHHHHH
Q 045794 540 VFRKTNASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
+.+ .|++|++||+++...+..-+.+++.
T Consensus 225 l~~-~ga~a~LVG~slM~~~~~~~a~~~l 252 (254)
T COG0134 225 LAK-AGADAFLVGEALMRADDPEEALREL 252 (254)
T ss_pred HHH-cCCCEEEecHHHhcCCCHHHHHHHh
Confidence 985 9999999999999888765555443
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=3e-06 Score=93.55 Aligned_cols=188 Identities=15% Similarity=0.196 Sum_probs=120.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHH-----hhhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLT-----SENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i-----~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+..+..+.+.+.+...+-++|=++..-+-..+ -++++.. ++.-.-.+.||.-+..-.+ .++.++
T Consensus 178 ~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~---~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~-------~~~~~~ 247 (495)
T PTZ00314 178 ISLEEANEVLRESRKGKLPIVNDNGELVALVSR---SDLKKNRGYPNASLDSNGQLLVGAAISTRPE-------DIERAA 247 (495)
T ss_pred CCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEe---hHhhhcccCchhhhccCCCEEEEEEECCCHH-------HHHHHH
Confidence 355678888899999999998854321111000 1111111 1111234566654443222 368899
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
.+.++|++.|+|.++--.. + + .++.++++.+.|+.-.|++ +
T Consensus 248 ~l~~ag~d~i~id~a~G~s-~-~-------~~~~i~~ik~~~~~~~v~a------G------------------------ 288 (495)
T PTZ00314 248 ALIEAGVDVLVVDSSQGNS-I-Y-------QIDMIKKLKSNYPHVDIIA------G------------------------ 288 (495)
T ss_pred HHHHCCCCEEEEecCCCCc-h-H-------HHHHHHHHHhhCCCceEEE------C------------------------
Confidence 9999999999998742221 1 1 1378999999886333332 1
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCC-CCHHHHHHH---HhhCCCcEEEecCC
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKG-FDMDLIKLI---SDAVSIPVIASSGA 531 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G-~d~~li~~l---~~~~~ipVIasGGi 531 (578)
++...+-++.+.++|++.|.+. ..++.-+.-| |.+..+.++ ++..++|||+.|||
T Consensus 289 ---------------~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi 353 (495)
T PTZ00314 289 ---------------NVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGI 353 (495)
T ss_pred ---------------CcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCC
Confidence 2233678889999999988641 1223222233 456665444 44458999999999
Q ss_pred CCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 532 GAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 532 ~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
.+..|+.+++. .||++||+|++|....
T Consensus 354 ~~~~di~kAla-~GA~~Vm~G~~~a~~~ 380 (495)
T PTZ00314 354 KNSGDICKALA-LGADCVMLGSLLAGTE 380 (495)
T ss_pred CCHHHHHHHHH-cCCCEEEECchhcccc
Confidence 99999999996 9999999999986543
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.2e-06 Score=84.15 Aligned_cols=185 Identities=18% Similarity=0.274 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEec---ccCCCCCCCCc-------------hhHHHHHHHhhhccccEEEeCCccccccCCC
Q 045794 308 KPVELARQYYKEGADEISFLNI---TGFRDFPLGDL-------------PMLQVLRLTSENVFVPLTVGGGIRDFTDANG 371 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl---~~~~~~~~~~~-------------~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~ 371 (578)
.-.+.++.+.+.|+|.||+ |+ |...||+.-+. .-+++++++++.+.+|+.+=.-.+-+
T Consensus 15 ~~~~~~~~l~~~Gad~iel-~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~----- 88 (242)
T cd04724 15 TTLEILKALVEAGADIIEL-GIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPI----- 88 (242)
T ss_pred HHHHHHHHHHHCCCCEEEE-CCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHH-----
Confidence 4457888999999999994 42 11223322111 34678888887778886432111110
Q ss_pred CccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceee
Q 045794 372 RHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVR 451 (578)
Q Consensus 372 ~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~ 451 (578)
+.+.-.+-++++.++|++.+++--.-.++ . +.+.+..+++|-+.+.+ +-
T Consensus 89 ~~~G~~~fi~~~~~aG~~giiipDl~~ee---~---------~~~~~~~~~~g~~~i~~-i~------------------ 137 (242)
T cd04724 89 LQYGLERFLRDAKEAGVDGLIIPDLPPEE---A---------EEFREAAKEYGLDLIFL-VA------------------ 137 (242)
T ss_pred HHhCHHHHHHHHHHCCCcEEEECCCCHHH---H---------HHHHHHHHHcCCcEEEE-eC------------------
Confidence 00001133788889999999984332221 1 22344456677543332 21
Q ss_pred eccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC-CCCCCCC--CC-HHHHHHHHhhCCCcEEE
Q 045794 452 VTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID-CDGQGKG--FD-MDLIKLISDAVSIPVIA 527 (578)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~-~dG~~~G--~d-~~li~~l~~~~~ipVIa 527 (578)
..+..+.++.+.+...+.+.++.+. ..|..++ .+ .+.++++++..++||++
T Consensus 138 -------------------------P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~v 192 (242)
T cd04724 138 -------------------------PTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAV 192 (242)
T ss_pred -------------------------CCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEE
Confidence 1234566777777666777766542 2233333 22 37788888888999999
Q ss_pred ecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 528 SSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 528 sGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
+|||++.++++++.+ . +||+++||++.
T Consensus 193 ggGI~~~e~~~~~~~-~-ADgvVvGSaiv 219 (242)
T cd04724 193 GFGISTPEQAAEVAK-Y-ADGVIVGSALV 219 (242)
T ss_pred EccCCCHHHHHHHHc-c-CCEEEECHHHH
Confidence 999999999999985 7 99999999985
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.7e-06 Score=88.14 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=90.5
Q ss_pred HHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCC
Q 045794 377 LEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLG 456 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~ 456 (578)
.+.++.++++|++.|++.+..-. ++.+ .++++++.+.++ +..++ + +
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~-~~~~--------~~~i~~ik~~~p-~v~Vi-~----G------------------- 141 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGH-SVYV--------IEMIKFIKKKYP-NVDVI-A----G------------------- 141 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCC-cHHH--------HHHHHHHHHHCC-CceEE-E----C-------------------
Confidence 57799999999999998764332 1222 367888888775 32222 1 1
Q ss_pred CCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCC-CCHHHHHHHHhhC---CCcEE
Q 045794 457 PNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKG-FDMDLIKLISDAV---SIPVI 526 (578)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G-~d~~li~~l~~~~---~ipVI 526 (578)
++...+.++.+.+.|++.|.+. ..++.-+..| +++.++.++.+.. ++|||
T Consensus 142 --------------------~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVI 201 (325)
T cd00381 142 --------------------NVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVI 201 (325)
T ss_pred --------------------CCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEE
Confidence 2234678899999999999873 1122111223 4777777776544 69999
Q ss_pred EecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 527 asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
++|||.+..|+.+++. +||++|++|+.|...+
T Consensus 202 A~GGI~~~~di~kAla-~GA~~VmiGt~fa~t~ 233 (325)
T cd00381 202 ADGGIRTSGDIVKALA-AGADAVMLGSLLAGTD 233 (325)
T ss_pred ecCCCCCHHHHHHHHH-cCCCEEEecchhcccc
Confidence 9999999999999996 9999999999986543
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-05 Score=83.69 Aligned_cols=190 Identities=21% Similarity=0.207 Sum_probs=129.3
Q ss_pred EEecCCHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhh-ccccEEEeCCccccccCCCCccChHHHH
Q 045794 303 VRNLGKPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSEN-VFVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 303 ~~~~~~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
.+..-||+++|+.|.+.||.-|.|+ |=+-+.+ .++.++++++. +.+||-- ++ ||.-. -.+
T Consensus 135 I~~~~dp~~iA~~Ye~~GA~aISVLTd~~~F~G-------s~e~L~~vr~~~v~lPvLr----KD------FIID~-yQI 196 (338)
T PLN02460 135 LRENFDPVEIAQAYEKGGAACLSVLTDEKYFQG-------SFENLEAIRNAGVKCPLLC----KE------FIVDA-WQI 196 (338)
T ss_pred cCCCCCHHHHHHHHHhCCCcEEEEecCcCcCCC-------CHHHHHHHHHcCCCCCEee----cc------ccCCH-HHH
Confidence 3444599999999999999999875 5544422 25667777776 8899953 22 22222 235
Q ss_pred HHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCC
Q 045794 381 SEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGE 460 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (578)
.+...+|||.|.+=.+.+.+ .++ ..+-+++..+|-+.+ | +|
T Consensus 197 ~eAr~~GADAVLLIaaiL~~-~~L---------~~l~~~A~~LGme~L-V--------------------EV-------- 237 (338)
T PLN02460 197 YYARSKGADAILLIAAVLPD-LDI---------KYMLKICKSLGMAAL-I--------------------EV-------- 237 (338)
T ss_pred HHHHHcCCCcHHHHHHhCCH-HHH---------HHHHHHHHHcCCeEE-E--------------------Ee--------
Confidence 66667899998887666763 222 334566677885532 2 11
Q ss_pred CcceEEEEEcccccCCCCCHHHHHHHHHHc-CCcEEEEeccCCCCCCCCCCHHHHHHHHh-----hC---CCcEEEecCC
Q 045794 461 EYAWYQCTVNGGREGRPIGAYELAKAVEDL-GAGEILLNCIDCDGQGKGFDMDLIKLISD-----AV---SIPVIASSGA 531 (578)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~-G~~~ii~tdi~~dG~~~G~d~~li~~l~~-----~~---~ipVIasGGi 531 (578)
+ + .+-++.+.+. |++-|-+++++-.. --.|++...++.. .. ++-+|+.+||
T Consensus 238 ---------H--------~-~~ElerAl~~~ga~iIGINNRdL~T--f~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI 297 (338)
T PLN02460 238 ---------H--------D-EREMDRVLGIEGVELIGINNRSLET--FEVDISNTKKLLEGERGEQIREKGIIVVGESGL 297 (338)
T ss_pred ---------C--------C-HHHHHHHHhcCCCCEEEEeCCCCCc--ceECHHHHHHHhhhccccccCCCCeEEEECCCC
Confidence 1 1 3344455565 88878788877652 2357777777765 11 3457899999
Q ss_pred CCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 532 GAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 532 ~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.+++|+..+.+ .|++||+||.++...+-+-..+++.+.
T Consensus 298 ~t~~Dv~~l~~-~GadAvLVGEsLMr~~dp~~~l~~L~~ 335 (338)
T PLN02460 298 FTPDDVAYVQN-AGVKAVLVGESLVKQDDPGKGIAGLFG 335 (338)
T ss_pred CCHHHHHHHHH-CCCCEEEECHHHhCCCCHHHHHHHHhC
Confidence 99999999985 999999999999988876666666653
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.2e-06 Score=84.28 Aligned_cols=174 Identities=18% Similarity=0.268 Sum_probs=116.2
Q ss_pred HHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC--
Q 045794 311 ELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG-- 387 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G-- 387 (578)
++|+...+.|.-.+..= |++. -.+.+++... ..+++-++-|+... .+|.+..++++|
T Consensus 49 ~LA~~a~~~G~~~i~hK~~~E~----------~~sfvrk~k~-~~L~v~~SvG~t~e---------~~~r~~~lv~a~~~ 108 (321)
T TIGR01306 49 KLAEQLAENGYFYIMHRFDEES----------RIPFIKDMQE-RGLFASISVGVKAC---------EYEFVTQLAEEALT 108 (321)
T ss_pred HHHHHHHHcCCEEEEecCCHHH----------HHHHHHhccc-cccEEEEEcCCCHH---------HHHHHHHHHhcCCC
Confidence 67888888776444432 2221 1122455432 24555555555543 268899999999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
+|.|++.++--.+ ..+ .+.++++.+.|+.--|++ |
T Consensus 109 ~d~i~~D~ahg~s--~~~-------~~~i~~i~~~~p~~~vi~----------------------------G-------- 143 (321)
T TIGR01306 109 PEYITIDIAHGHS--NSV-------INMIKHIKTHLPDSFVIA----------------------------G-------- 143 (321)
T ss_pred CCEEEEeCccCch--HHH-------HHHHHHHHHhCCCCEEEE----------------------------e--------
Confidence 7999998743332 122 377899998885321222 1
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCCC---CHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKGF---DMDLIKLISDAVSIPVIASSGAGAVEHFS 538 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G~---d~~li~~l~~~~~ipVIasGGi~s~eDi~ 538 (578)
++...+.++.+.+.|++.|.+. ..++.-+..|. .+..+.++++..++|||+.|||++-.|+.
T Consensus 144 ---------nV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~ 214 (321)
T TIGR01306 144 ---------NVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIA 214 (321)
T ss_pred ---------cCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHH
Confidence 2335789999999999998854 11222222232 45688888888899999999999999999
Q ss_pred HHHHhcCchHHhhhhhhccCC
Q 045794 539 DVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~ 559 (578)
+++. +||++|++|+.|....
T Consensus 215 KALa-~GAd~Vmig~~~ag~~ 234 (321)
T TIGR01306 215 KSIR-FGASMVMIGSLFAGHE 234 (321)
T ss_pred HHHH-cCCCEEeechhhcCcc
Confidence 9996 8999999999986433
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-05 Score=76.98 Aligned_cols=171 Identities=17% Similarity=0.222 Sum_probs=111.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+..+.++...+.|++.+++-+-+.... .....+.-++.+++..++|+.+.. + ++-..+.
T Consensus 13 ~~~~~~~~~~~~~g~~~v~lR~~~~~~~---~~~~~~~~l~~~~~~~~~~l~i~~------~-----------~~la~~~ 72 (196)
T TIGR00693 13 ADLLNRVEAALKGGVTLVQLRDKGSNTR---ERLALAEKLQELCRRYGVPFIVND------R-----------VDLALAL 72 (196)
T ss_pred ccHHHHHHHHHhcCCCEEEEecCCCCHH---HHHHHHHHHHHHHHHhCCeEEEEC------H-----------HHHHHHc
Confidence 3567788888889999887754332100 011223344555555678998732 2 6677889
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|++.|-++..... ...+.+..+.. ..+++.+.
T Consensus 73 g~~GvHl~~~~~~----------------~~~~r~~~~~~-~~ig~s~h------------------------------- 104 (196)
T TIGR00693 73 GADGVHLGQDDLP----------------ASEARALLGPD-KIIGVSTH------------------------------- 104 (196)
T ss_pred CCCEEecCcccCC----------------HHHHHHhcCCC-CEEEEeCC-------------------------------
Confidence 9999999843332 12333333332 23333321
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC----CCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG----FDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G----~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~ 541 (578)
++.+ +.++.+.|++.+.+..+-..++..+ .+++.++++.+.. ++||++.||| +.+++.++.
T Consensus 105 ------------~~~e-~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~ 170 (196)
T TIGR00693 105 ------------NLEE-LAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVL 170 (196)
T ss_pred ------------CHHH-HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHH
Confidence 2234 4457788999998765544444333 3789999998765 5999999999 689999998
Q ss_pred HhcCchHHhhhhhhccCCC
Q 045794 542 RKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~~ 560 (578)
+ .|++||++++++...+-
T Consensus 171 ~-~G~~gva~~~~i~~~~d 188 (196)
T TIGR00693 171 A-AGADGVAVVSAIMQAAD 188 (196)
T ss_pred H-cCCCEEEEhHHhhCCCC
Confidence 5 99999999999986543
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=98.37 E-value=3e-06 Score=87.97 Aligned_cols=77 Identities=22% Similarity=0.144 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+.++.+.+.|++.|.++....-....|+ .++++.++++.+ ++|||++|||++..|+.+++. +||++|++|+.+..
T Consensus 183 ~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~-lGAd~V~ig~~~l~ 261 (299)
T cd02809 183 PEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALA-LGADAVLIGRPFLY 261 (299)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 56789999999999999763321122344 789999998877 499999999999999999996 99999999998875
Q ss_pred C
Q 045794 558 K 558 (578)
Q Consensus 558 ~ 558 (578)
.
T Consensus 262 ~ 262 (299)
T cd02809 262 G 262 (299)
T ss_pred H
Confidence 5
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-05 Score=78.34 Aligned_cols=181 Identities=14% Similarity=0.225 Sum_probs=119.0
Q ss_pred CCHHH---HHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhh-ccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVE---LARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSEN-VFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~---~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.|+.. .++.+.+.|++++| +|+ |+..- .+-.--.++++.+++. +.+|+.+===+.+.+ .-++
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH-~DvmDG~Fv--pn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~----------~~i~ 75 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVH-FDVMDNHYV--PNLTFGAPICKALRDYGITAPIDVHLMVKPVD----------RIIP 75 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEE-EecccCccc--CccccCHHHHHHHHHhCCCCCEEEEeccCCHH----------HHHH
Confidence 34554 45566667999999 565 44211 1112225678888775 466655433445554 3578
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
.+.++||+.|.+=.++..+.. +.++.+ +..|- +.-+++...
T Consensus 76 ~~~~~gad~i~~H~Ea~~~~~-----------~~l~~i-k~~g~-k~GlalnP~-------------------------- 116 (220)
T PRK08883 76 DFAKAGASMITFHVEASEHVD-----------RTLQLI-KEHGC-QAGVVLNPA-------------------------- 116 (220)
T ss_pred HHHHhCCCEEEEcccCcccHH-----------HHHHHH-HHcCC-cEEEEeCCC--------------------------
Confidence 888999999999877655321 445555 44664 455555411
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC---CHHHHHHHHhhC-----CCcEEEecCCCC
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF---DMDLIKLISDAV-----SIPVIASSGAGA 533 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~---d~~li~~l~~~~-----~ipVIasGGi~s 533 (578)
++++.++.+.+. ++.|+++.+.-.-..+.+ .++.++++++.. ++|+.+-|||.
T Consensus 117 -----------------Tp~~~i~~~l~~-~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~- 177 (220)
T PRK08883 117 -----------------TPLHHLEYIMDK-VDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK- 177 (220)
T ss_pred -----------------CCHHHHHHHHHh-CCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-
Confidence 345566666554 899999988765444444 456677776654 38999999996
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
.+.+.++.+ .||+++++||++...+
T Consensus 178 ~eni~~l~~-aGAd~vVvGSaIf~~~ 202 (220)
T PRK08883 178 VDNIREIAE-AGADMFVAGSAIFGQP 202 (220)
T ss_pred HHHHHHHHH-cCCCEEEEeHHHhCCC
Confidence 899999985 9999999999987543
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.7e-05 Score=76.28 Aligned_cols=168 Identities=20% Similarity=0.286 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh---hccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE---NVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~---~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
.+..+.++.+.+.|++.+|+-+-+.. ...+...++++.+ ..++++.+ .+ + ++.+
T Consensus 12 ~~~~~~l~~l~~~g~~~i~lr~~~~~------~~~~~~~~~~i~~~~~~~~~~l~~----~~--~-----------~~~a 68 (196)
T cd00564 12 EDLLEVVEAALKGGVTLVQLREKDLS------ARELLELARALRELCRKYGVPLII----ND--R-----------VDLA 68 (196)
T ss_pred chHHHHHHHHHhcCCCEEEEeCCCCC------HHHHHHHHHHHHHHHHHhCCeEEE----eC--h-----------HHHH
Confidence 46778888888899999987654432 1344555555544 34677764 22 2 6678
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.+.|++.+-+...... ...+.+.++.. ..+++-+
T Consensus 69 ~~~g~~~vh~~~~~~~----------------~~~~~~~~~~~-~~~g~~~----------------------------- 102 (196)
T cd00564 69 LAVGADGVHLGQDDLP----------------VAEARALLGPD-LIIGVST----------------------------- 102 (196)
T ss_pred HHcCCCEEecCcccCC----------------HHHHHHHcCCC-CEEEeeC-----------------------------
Confidence 8999997766642211 12222223211 2222211
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC----CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG----KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~----~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~ 539 (578)
-+ .+.++++.+.|++.+.+..+...+.. ....++.++++++..++||++.||| +.+++.+
T Consensus 103 --------------~t-~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~ 166 (196)
T cd00564 103 --------------HS-LEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAE 166 (196)
T ss_pred --------------CC-HHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHH
Confidence 02 24566777889999998765433332 2346899999988889999999999 5799999
Q ss_pred HHHhcCchHHhhhhhhccCCC
Q 045794 540 VFRKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~~~~ 560 (578)
+.+ .|++++++|+++...+-
T Consensus 167 ~~~-~Ga~~i~~g~~i~~~~~ 186 (196)
T cd00564 167 VLA-AGADGVAVISAITGADD 186 (196)
T ss_pred HHH-cCCCEEEEehHhhcCCC
Confidence 985 99999999999976543
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.9e-06 Score=90.68 Aligned_cols=187 Identities=14% Similarity=0.098 Sum_probs=122.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc----cccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV----FVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~----~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
...+..+.+.+.+...+-++|=++..-|- -..-++++...... .-.+.+|.-+...++ ..+.++.|
T Consensus 166 sL~eAl~lM~~~~i~~LPVVD~~g~lvGI---IT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~-------~~~~a~~L 235 (479)
T PRK07807 166 DPREAFDLLEAARVKLAPVVDADGRLVGV---LTRTGALRATIYTPAVDAAGRLRVAAAVGINGD-------VAAKARAL 235 (479)
T ss_pred cHHHHHHHHHhcCCCEEEEEcCCCeEEEE---EEHHHHHHHhhCCchhhhhhccchHhhhccChh-------HHHHHHHH
Confidence 44567788888999999888743311010 11112222221100 001223322222111 24779999
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.+.|++.|++.++--.. ..+ .++++++.++|+..-|++ |
T Consensus 236 v~aGvd~i~~D~a~~~~--~~~-------~~~i~~ik~~~p~~~v~a----------------------------g---- 274 (479)
T PRK07807 236 LEAGVDVLVVDTAHGHQ--EKM-------LEALRAVRALDPGVPIVA----------------------------G---- 274 (479)
T ss_pred HHhCCCEEEEeccCCcc--HHH-------HHHHHHHHHHCCCCeEEe----------------------------e----
Confidence 99999999998765542 222 488999999997544443 1
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe----c--cCCCCCCCC-CCHHHHHHHHh---hCCCcEEEecCCCC
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN----C--IDCDGQGKG-FDMDLIKLISD---AVSIPVIASSGAGA 533 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t----d--i~~dG~~~G-~d~~li~~l~~---~~~ipVIasGGi~s 533 (578)
++...+-++.+.+.|++.|-+- + .++.=+.-| |++.++.++++ ..++|||+-|||.+
T Consensus 275 -------------nv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~ 341 (479)
T PRK07807 275 -------------NVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRH 341 (479)
T ss_pred -------------ccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCC
Confidence 4456788999999999988610 1 222222222 68999988877 55899999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
..|+.+++. .||++||+|++|....
T Consensus 342 ~~~~~~al~-~ga~~v~~g~~~ag~~ 366 (479)
T PRK07807 342 PRDVALALA-AGASNVMIGSWFAGTY 366 (479)
T ss_pred HHHHHHHHH-cCCCeeeccHhhccCc
Confidence 999999996 9999999999996543
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-05 Score=76.71 Aligned_cols=182 Identities=15% Similarity=0.152 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+..+.++...+.|++.||+=..|+... .......+.++++++.+..|+.+.==+.+. .+.++.+.++|
T Consensus 13 ~~~~~~~~~~~~G~~~i~l~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~----------~~~~~~~~~~g 80 (211)
T cd00429 13 NLGEELKRLEEAGADWIHIDVMDGHFV--PNLTFGPPVVKALRKHTDLPLDVHLMVENP----------ERYIEAFAKAG 80 (211)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCC--CccccCHHHHHHHHhhCCCcEEEEeeeCCH----------HHHHHHHHHcC
Confidence 455667888888999999844443210 111122467888876554454333233332 23588888999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
+|.|.+--...... .+.++.+ +.+| -.+.+++. .
T Consensus 81 ~dgv~vh~~~~~~~-----------~~~~~~~-~~~~-~~~g~~~~--~------------------------------- 114 (211)
T cd00429 81 ADIITFHAEATDHL-----------HRTIQLI-KELG-MKAGVALN--P------------------------------- 114 (211)
T ss_pred CCEEEECccchhhH-----------HHHHHHH-HHCC-CeEEEEec--C-------------------------------
Confidence 99986622211211 1333343 4454 23333331 1
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCH---HHHHHHHhhC-----CCcEEEecCCCCHHHHHH
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDM---DLIKLISDAV-----SIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~---~li~~l~~~~-----~ipVIasGGi~s~eDi~~ 539 (578)
. +..+.++++.+. ++.+++..+...++.+..++ +.++++++.. ++|+++.|||+. +++.+
T Consensus 115 ---------~-~~~~~~~~~~~~-~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~ 182 (211)
T cd00429 115 ---------G-TPVEVLEPYLDE-VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPL 182 (211)
T ss_pred ---------C-CCHHHHHHHHhh-CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHH
Confidence 0 124555555444 78888766644334444444 4445555444 389999999974 99999
Q ss_pred HHHhcCchHHhhhhhhccCCC
Q 045794 540 VFRKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~~~~ 560 (578)
+.+ .|++++++||++...+-
T Consensus 183 ~~~-~gad~iivgsai~~~~~ 202 (211)
T cd00429 183 LAE-AGADVLVAGSALFGSDD 202 (211)
T ss_pred HHH-cCCCEEEECHHHhCCCC
Confidence 985 99999999999986554
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.2e-05 Score=75.51 Aligned_cols=86 Identities=23% Similarity=0.215 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCC---CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQG---KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~---~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+.++++.+.|++.+++-.+..+.+. .+.+++.++++.+.+++||++.||| +++++.++.+ .|+++|++++++..
T Consensus 105 ~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~-~Ga~gvav~s~i~~ 182 (201)
T PRK07695 105 LEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLA-AGVSGIAVMSGIFS 182 (201)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-cCCCEEEEEHHHhc
Confidence 34577888999999986544433333 3347899999998889999999999 8999999985 99999999999986
Q ss_pred CCCCHHHHHHH
Q 045794 558 KEVPIQSVKEH 568 (578)
Q Consensus 558 ~~~~~~~~~~~ 568 (578)
.+-+...++++
T Consensus 183 ~~~p~~~~~~~ 193 (201)
T PRK07695 183 SANPYSKAKRY 193 (201)
T ss_pred CCCHHHHHHHH
Confidence 55544444443
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-05 Score=79.48 Aligned_cols=196 Identities=20% Similarity=0.267 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+|.+.++...+.|.|.|+|==-++. ......++++++++ +.+|+.+= |.+..+ ..
T Consensus 20 ~~~~~~~~~~~~gtdai~vGGS~~v-----t~~~~~~~v~~ik~-~~lPvilfp~~~~~i------------------~~ 75 (232)
T PRK04169 20 LPDEALEAICESGTDAIIVGGSDGV-----TEENVDELVKAIKE-YDLPVILFPGNIEGI------------------SP 75 (232)
T ss_pred CCHHHHHHHHhcCCCEEEEcCCCcc-----chHHHHHHHHHHhc-CCCCEEEeCCCcccc------------------Cc
Confidence 3445557788899998876322221 12345667888887 88999763 333332 23
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
+||.+.+=|..=.++++|+-. . -.+.+.++ ++++-+ ++ -.+|+. +++++ +
T Consensus 76 ~aDa~l~~svlNs~~~~~iig-~--~~~~~~~~-~~~~le--~i----p~gYiv--------------~~~~~------~ 125 (232)
T PRK04169 76 GADAYLFPSVLNSRNPYWIIG-A--HVEAAPII-KKGGLE--VI----PEGYIV--------------LNPGS------K 125 (232)
T ss_pred CCCEEEEEEEecCCCcchHhh-H--HHHHHHHH-hhcCcE--EC----ceEEEE--------------ECCCC------e
Confidence 578777655443444445310 0 00112222 323322 11 011110 00111 1
Q ss_pred EEEcccccCCCCCHHHHHHHHHH----cCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCC-cEEEecCCCCHHHHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVED----LGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSI-PVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~----~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~i-pVIasGGi~s~eDi~~l~ 541 (578)
+..-+-....+.+..+++..+.- +|. .++|+..+. +...++|.++++++++.++. |++++|||++.+++++++
T Consensus 126 va~~~~~~~~~~~~~~~~~~~~lA~~~~g~-~~vYle~gs-~~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l 203 (232)
T PRK04169 126 VAVVGTAAPIPLDKPDIAAYAALAAEYLGM-PIVYLEYGG-GAGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELM 203 (232)
T ss_pred eeeeeccccCCCChHHHHHHHHHHHHHcCC-CeEEEECCC-CCCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHH
Confidence 11112223334454554443322 233 577777664 56677899999999999988 999999999999999988
Q ss_pred HhcCchHHhhhhhhccCCC
Q 045794 542 RKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~~ 560 (578)
+ .|||+|++||+++.+.-
T Consensus 204 ~-~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 204 A-AGADTIVVGNIIEEDPK 221 (232)
T ss_pred H-hCCCEEEEChHHhhCHH
Confidence 5 89999999999997643
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.5e-06 Score=89.29 Aligned_cols=179 Identities=18% Similarity=0.265 Sum_probs=118.0
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhh-------ccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSEN-------VFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~-------~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
++|..+.+.|. |.++..+.. .....+.++++.+. -.-.+.++..|...+| .+|.++.|
T Consensus 52 ~mAiama~~Gg--lgvih~~~~------~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~-------~~er~~~L 116 (352)
T PF00478_consen 52 EMAIAMARLGG--LGVIHRNMS------IEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDD-------DFERAEAL 116 (352)
T ss_dssp HHHHHHHHTTS--EEEEESSSC------HHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTC-------HHHHHHHH
T ss_pred HHHHHHHHhcC--CceecCCCC------HHHHHHHHhhhccccccccccccccceEEEEecCCHH-------HHHHHHHH
Confidence 78888888764 666666542 12345566666542 1234455555555443 46889999
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.++|+|.++|.++--.. ... .+.++++.+.|++--|++ |
T Consensus 117 ~~agvD~ivID~a~g~s-~~~--------~~~ik~ik~~~~~~~via----------------------------G---- 155 (352)
T PF00478_consen 117 VEAGVDVIVIDSAHGHS-EHV--------IDMIKKIKKKFPDVPVIA----------------------------G---- 155 (352)
T ss_dssp HHTT-SEEEEE-SSTTS-HHH--------HHHHHHHHHHSTTSEEEE----------------------------E----
T ss_pred HHcCCCEEEccccCccH-HHH--------HHHHHHHHHhCCCceEEe----------------------------c----
Confidence 99999999998766553 223 278999999998544444 1
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCCC-CHHHHHHH---HhhCCCcEEEecCCCC
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKGF-DMDLIKLI---SDAVSIPVIASSGAGA 533 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G~-d~~li~~l---~~~~~ipVIasGGi~s 533 (578)
++-..+.++.|.+.|++.|.+- ..++.-+.-|. -+..+.++ ++...+|||+-|||++
T Consensus 156 -------------NV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~ 222 (352)
T PF00478_consen 156 -------------NVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRT 222 (352)
T ss_dssp -------------EE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SS
T ss_pred -------------ccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCc
Confidence 2234688999999999998853 33343333343 34444444 4445799999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
.-|+.+++. .|||.||+|+.|....
T Consensus 223 sGDi~KAla-~GAd~VMlG~llAgt~ 247 (352)
T PF00478_consen 223 SGDIVKALA-AGADAVMLGSLLAGTD 247 (352)
T ss_dssp HHHHHHHHH-TT-SEEEESTTTTTBT
T ss_pred ccceeeeee-ecccceeechhhccCc
Confidence 999999995 9999999999986543
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.6e-06 Score=83.81 Aligned_cols=65 Identities=26% Similarity=0.284 Sum_probs=52.7
Q ss_pred CCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhh
Q 045794 320 GADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAV 398 (578)
Q Consensus 320 g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~ 398 (578)
|.+ +.+++-++. .+...|.++++++++.+ ++|+++|||||+.|+ +++++++|||+|++||.+.
T Consensus 149 g~~-~vYlE~gs~----~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~-----------a~~l~~aGAD~VVVGs~~~ 212 (223)
T TIGR01768 149 GMP-IIYLEAGSG----APEPVPPELVAEVKKVLDKARLFVGGGIRSVEK-----------AREMAEAGADTIVTGNVIE 212 (223)
T ss_pred CCc-EEEEEecCC----CCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHH-----------HHHHHHcCCCEEEECcHHh
Confidence 666 444554432 23356788999999887 899999999999976 9999999999999999999
Q ss_pred cc
Q 045794 399 YA 400 (578)
Q Consensus 399 ~~ 400 (578)
++
T Consensus 213 ~d 214 (223)
T TIGR01768 213 ED 214 (223)
T ss_pred hC
Confidence 96
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.1e-06 Score=84.63 Aligned_cols=79 Identities=24% Similarity=0.382 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
...+++++++|++.+--+. .--|+..|+ |.++++.+++..++|||+.|||++++|+.++++ +|++||++||+++...
T Consensus 134 ~~~ar~l~~~G~~~vmPlg-~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Ame-lGAdgVlV~SAIt~a~ 211 (248)
T cd04728 134 PVLAKRLEDAGCAAVMPLG-SPIGSGQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIAKAK 211 (248)
T ss_pred HHHHHHHHHcCCCEeCCCC-cCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH-cCCCEEEEChHhcCCC
Confidence 6789999999999883211 334566788 999999999988999999999999999999996 9999999999999654
Q ss_pred CC
Q 045794 560 VP 561 (578)
Q Consensus 560 ~~ 561 (578)
.+
T Consensus 212 dP 213 (248)
T cd04728 212 DP 213 (248)
T ss_pred CH
Confidence 43
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.7e-06 Score=79.71 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
....+...+.+| -++++++ ..|.. .|.++++++++.+ ++|++++|||+++++++++++ .||++|++|++++..
T Consensus 137 ~~ayA~aae~~g-~~ivyLe--~SG~~--~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~-aGAD~VVVGsai~~~ 210 (219)
T cd02812 137 AAAYALAAEYLG-MPIVYLE--YSGAY--GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAE-AGADTIVVGNIVEED 210 (219)
T ss_pred HHHHHHHHHHcC-CeEEEeC--CCCCc--CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHH-cCCCEEEECchhhCC
Confidence 456777888888 6788887 44444 7899999999998 999999999999999999995 899999999999986
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.9e-05 Score=88.32 Aligned_cols=189 Identities=20% Similarity=0.187 Sum_probs=132.4
Q ss_pred EecCCHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 304 RNLGKPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 304 ~~~~~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+..-||.++|+.|.+.||.-|.|+ |=.-+. | +++.++++++.+.+||-- ++ ||.-. -++.+
T Consensus 67 ~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~-G------s~~~l~~vr~~v~~PvLr----KD------FIid~-~QI~e 128 (695)
T PRK13802 67 SDIPDPAALAREYEQGGASAISVLTEGRRFL-G------SLDDFDKVRAAVHIPVLR----KD------FIVTD-YQIWE 128 (695)
T ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCcCcCC-C------CHHHHHHHHHhCCCCEEe----cc------ccCCH-HHHHH
Confidence 334599999999999999999885 444432 1 256777788888999952 22 22222 33666
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
...+|||-|.+=..++.+ ..+ +.+-+.+..+|-+.+ |-+
T Consensus 129 a~~~GADavLLI~~~L~~-~~l---------~~l~~~a~~lGme~L-vEv------------------------------ 167 (695)
T PRK13802 129 ARAHGADLVLLIVAALDD-AQL---------KHLLDLAHELGMTVL-VET------------------------------ 167 (695)
T ss_pred HHHcCCCEeehhHhhcCH-HHH---------HHHHHHHHHcCCeEE-EEe------------------------------
Confidence 777899999887777763 112 334455667775532 211
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l 540 (578)
+ -.+-++++.+.|++-|-+++++-.- -..|++...++.... ++.+|+.+||.+++|+..+
T Consensus 168 -------h---------~~~el~~a~~~ga~iiGINnRdL~t--f~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l 229 (695)
T PRK13802 168 -------H---------TREEIERAIAAGAKVIGINARNLKD--LKVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDY 229 (695)
T ss_pred -------C---------CHHHHHHHHhCCCCEEEEeCCCCcc--ceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHH
Confidence 0 1345566778899877788877652 246788888877665 4678999999999999999
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.+ .|++|++||+++...+.+-..+++.+.
T Consensus 230 ~~-~G~davLIGeslm~~~dp~~~~~~l~~ 258 (695)
T PRK13802 230 AR-AGADAVLVGEGVATADDHELAVERLVK 258 (695)
T ss_pred HH-CCCCEEEECHHhhCCCCHHHHHHHHHh
Confidence 85 999999999999988876666665543
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=2e-05 Score=85.98 Aligned_cols=190 Identities=19% Similarity=0.266 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+-+++++...+.|++.|++ +..... ..-.+.|+++++....+..+ .-+|-.. .|+ ..++.+.++
T Consensus 16 ~~~~~~~~~~~~~Gv~~ie~-g~p~~~------~~~~~~i~~l~~~~~~~~ii-~D~kl~d------~g~-~~v~~a~~a 80 (430)
T PRK07028 16 DRAVEIAKEAVAGGADWIEA-GTPLIK------SEGMNAIRTLRKNFPDHTIV-ADMKTMD------TGA-IEVEMAAKA 80 (430)
T ss_pred HHHHHHHHHHHhcCCcEEEe-CCHHHH------HhhHHHHHHHHHHCCCCEEE-EEeeecc------chH-HHHHHHHHc
Confidence 35567888888899999985 221110 11257788888765444432 1222211 011 148899999
Q ss_pred Ccceeec-chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 387 GADKISI-GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 387 Ga~~vv~-gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
||+.|.+ +...... + .+.++. ++++|.. +++.+ ..
T Consensus 81 GAdgV~v~g~~~~~~----~-------~~~i~~-a~~~G~~-~~~g~--~s----------------------------- 116 (430)
T PRK07028 81 GADIVCILGLADDST----I-------EDAVRA-ARKYGVR-LMADL--IN----------------------------- 116 (430)
T ss_pred CCCEEEEecCCChHH----H-------HHHHHH-HHHcCCE-EEEEe--cC-----------------------------
Confidence 9999886 5321110 0 133344 3457743 33211 00
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
.-+..+.++++.+.|++.|.+.... ++...++ .++.++++++.+++||++.||| +.+.+.++++ .
T Consensus 117 -----------~~t~~e~~~~a~~~GaD~I~~~pg~-~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI-~~~n~~~~l~-a 182 (430)
T PRK07028 117 -----------VPDPVKRAVELEELGVDYINVHVGI-DQQMLGKDPLELLKEVSEEVSIPIAVAGGL-DAETAAKAVA-A 182 (430)
T ss_pred -----------CCCHHHHHHHHHhcCCCEEEEEecc-chhhcCCChHHHHHHHHhhCCCcEEEECCC-CHHHHHHHHH-c
Confidence 1123566788889999999766322 2222233 4688999988888999999999 6789999985 8
Q ss_pred CchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 545 NASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
|++++++||++...+ ++.+..+.|+
T Consensus 183 GAdgv~vGsaI~~~~-d~~~~~~~l~ 207 (430)
T PRK07028 183 GADIVIVGGNIIKSA-DVTEAARKIR 207 (430)
T ss_pred CCCEEEEChHHcCCC-CHHHHHHHHH
Confidence 999999999998754 3444444443
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.1e-05 Score=81.14 Aligned_cols=178 Identities=15% Similarity=0.224 Sum_probs=123.1
Q ss_pred HHHHHHHHHcCC-CeEEE-EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 310 VELARQYYKEGA-DEISF-LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 310 ~~~a~~~~~~g~-~~i~~-~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
.++|..+.+.|. .-+|= .+++. ..+.+++..+.....+.+.-|++.. ++|.++.|+++|
T Consensus 59 ~~mA~~la~~g~~~~iHk~~~~e~----------~~~~v~~~~~~~~~~~~vsvG~~~~---------d~er~~~L~~a~ 119 (343)
T TIGR01305 59 FEMAAALSQHSIFTAIHKHYSVDE----------WKAFATNSSPDCLQNVAVSSGSSDN---------DLEKMTSILEAV 119 (343)
T ss_pred HHHHHHHHHCCCeEEEeeCCCHHH----------HHHHHHhhcccccceEEEEeccCHH---------HHHHHHHHHhcC
Confidence 378999988753 44442 23322 1344555444444455566677764 268899999985
Q ss_pred --cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 388 --ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 388 --a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|.|+|.++-=.. +.+ .+.++.+.+.|+.--|+. |
T Consensus 120 ~~~d~iviD~AhGhs--~~~-------i~~ik~ir~~~p~~~via----------------------------G------ 156 (343)
T TIGR01305 120 PQLKFICLDVANGYS--EHF-------VEFVKLVREAFPEHTIMA----------------------------G------ 156 (343)
T ss_pred CCCCEEEEECCCCcH--HHH-------HHHHHHHHhhCCCCeEEE----------------------------e------
Confidence 9999998765432 233 378999999996432222 1
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCC-CCHHHHHHHHhhC---CCcEEEecCCCCHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKG-FDMDLIKLISDAV---SIPVIASSGAGAVE 535 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G-~d~~li~~l~~~~---~ipVIasGGi~s~e 535 (578)
++-..+-++.+.+.|++.|.+- ..+|.-+.-| +-+..+.+++++. .+|||+=|||+..-
T Consensus 157 -----------NV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~g 225 (343)
T TIGR01305 157 -----------NVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPG 225 (343)
T ss_pred -----------cccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchh
Confidence 2344678889999999998644 4555545556 5677777776544 68999999999999
Q ss_pred HHHHHHHhcCchHHhhhhhhccCCCC
Q 045794 536 HFSDVFRKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 536 Di~~l~~~~G~~gv~vgsa~~~~~~~ 561 (578)
|+.+++. .||++||+|+.+..++-.
T Consensus 226 DI~KALA-~GAd~VMlG~llAG~~Es 250 (343)
T TIGR01305 226 DVAKAFG-AGADFVMLGGMFAGHTES 250 (343)
T ss_pred HHHHHHH-cCCCEEEECHhhhCcCcC
Confidence 9999996 999999999998765543
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.8e-05 Score=74.29 Aligned_cols=206 Identities=21% Similarity=0.248 Sum_probs=133.8
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCC----CCCCCchhHHHHHHHhhhccccEEEeCCccccc-cCCCCccChHHHHHHH
Q 045794 309 PVELARQYYKEGADEISFLNITGFRD----FPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFT-DANGRHYSSLEVASEY 383 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~----~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~-d~~~~~~~~~~~~~~~ 383 (578)
.++=|+.|.+.|+|.|+|=+.-..-- ++..-..+-.+++++.+++.+|+ ||.=+. | ..+.+.-.
T Consensus 30 A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~----GvnvL~nd-------~~aal~iA 98 (257)
T TIGR00259 30 AWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPL----GINVLRND-------AVAALAIA 98 (257)
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCe----eeeeecCC-------CHHHHHHH
Confidence 33447889999999999976643210 00001223344566777777885 554333 2 12334445
Q ss_pred HHcCcceeec----chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCC
Q 045794 384 FRSGADKISI----GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNG 459 (578)
Q Consensus 384 l~~Ga~~vv~----gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (578)
...|++.|=+ |+..-. ..+.+ .+...+-+..++.| +.|.+--|++..
T Consensus 99 ~a~ga~FIRv~~~~g~~~~d--~G~~~----~~a~e~~r~r~~l~-~~v~i~adV~~k---------------------- 149 (257)
T TIGR00259 99 MAVGAKFIRVNVLTGVYASD--QGIIE----GNAGELIRYKKLLG-SEVKILADIVVK---------------------- 149 (257)
T ss_pred HHhCCCEEEEccEeeeEecc--ccccc----ccHHHHHHHHHHcC-CCcEEEeceeec----------------------
Confidence 5679885543 544222 22221 12233344556666 456665565432
Q ss_pred CCcceEEEEEcccccCCCCCHHHHHHHHHHcC-CcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHH
Q 045794 460 EEYAWYQCTVNGGREGRPIGAYELAKAVEDLG-AGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHF 537 (578)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G-~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi 537 (578)
++. -..+.++.+.++.....+ +|.+++|.. +|.+-+|++.++++++.. +.||+++||+ +++.+
T Consensus 150 ----------h~~-~l~~~~~~e~a~~~~~~~~aDavivtG~---~TG~~~d~~~l~~vr~~~~~~PvllggGv-t~eNv 214 (257)
T TIGR00259 150 ----------HAV-HLGNRDLESIALDTVERGLADAVILSGK---TTGTEVDLELLKLAKETVKDTPVLAGSGV-NLENV 214 (257)
T ss_pred ----------ccC-cCCCCCHHHHHHHHHHhcCCCEEEECcC---CCCCCCCHHHHHHHHhccCCCeEEEECCC-CHHHH
Confidence 111 123678899999988888 999998874 466668999999998755 6899999999 78999
Q ss_pred HHHHHhcCchHHhhhhhhcc-C----CCCHHHHHHHHHh
Q 045794 538 SDVFRKTNASAALAAGIFHR-K----EVPIQSVKEHLYK 571 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~-~----~~~~~~~~~~l~~ 571 (578)
.++++ . ++|++|||.|-. | +++.+.++++++.
T Consensus 215 ~e~l~-~-adGviVgS~~K~~G~~~n~~D~~rV~~Fm~~ 251 (257)
T TIGR00259 215 EELLS-I-ADGVIVATTIKKDGVFNNFVDQARVSQFVEK 251 (257)
T ss_pred HHHHh-h-CCEEEECCCcccCCccCCCcCHHHHHHHHHH
Confidence 99986 4 999999999954 3 5888888888764
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-05 Score=82.49 Aligned_cols=176 Identities=14% Similarity=0.233 Sum_probs=118.5
Q ss_pred HHHHHHHHHcCC-CeEEE-EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc-
Q 045794 310 VELARQYYKEGA-DEISF-LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS- 386 (578)
Q Consensus 310 ~~~a~~~~~~g~-~~i~~-~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~- 386 (578)
.++|..+.+.|. .-||= .+++. ..+.+++........+.+.-|++.. | +|.+++|+++
T Consensus 60 ~~mA~~la~~g~~~~iHk~~~~e~----------~~~fv~~~~~~~~~~~~vavG~~~~-d--------~er~~~L~~~~ 120 (346)
T PRK05096 60 FEMAKALASFDILTAVHKHYSVEE----------WAAFVNNSSADVLKHVMVSTGTSDA-D--------FEKTKQILALS 120 (346)
T ss_pred HHHHHHHHHCCCeEEEecCCCHHH----------HHHHHHhccccccceEEEEecCCHH-H--------HHHHHHHHhcC
Confidence 388999988754 43442 22221 1344555554444455666677763 2 6889999994
Q ss_pred -CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 387 -GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 387 -Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
|+|.|+|.++-=.+ +.+ .++++++.+.|+.--|++ |
T Consensus 121 ~g~D~iviD~AhGhs--~~~-------i~~ik~ik~~~P~~~vIa----------------------------G------ 157 (346)
T PRK05096 121 PALNFICIDVANGYS--EHF-------VQFVAKAREAWPDKTICA----------------------------G------ 157 (346)
T ss_pred CCCCEEEEECCCCcH--HHH-------HHHHHHHHHhCCCCcEEE----------------------------e------
Confidence 99999998765442 233 378999999997533333 1
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEE------eccCCCCCCCCC-CHHHHHHH---HhhCCCcEEEecCCCCHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILL------NCIDCDGQGKGF-DMDLIKLI---SDAVSIPVIASSGAGAVE 535 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~------tdi~~dG~~~G~-d~~li~~l---~~~~~ipVIasGGi~s~e 535 (578)
++-..+.++.|.+.|++.+-+ ..+++.-+.-|. -+..+.+. +...++|||+-|||+..-
T Consensus 158 -----------NV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sG 226 (346)
T PRK05096 158 -----------NVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPG 226 (346)
T ss_pred -----------cccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCccccc
Confidence 344467899999999998852 123343333443 44444444 345589999999999999
Q ss_pred HHHHHHHhcCchHHhhhhhhccCC
Q 045794 536 HFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 536 Di~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
|+.+++. .|++.||+|+.|....
T Consensus 227 DI~KAla-aGAd~VMlGsllAGt~ 249 (346)
T PRK05096 227 DVAKAFG-GGADFVMLGGMLAGHE 249 (346)
T ss_pred HHHHHHH-cCCCEEEeChhhcCcc
Confidence 9999996 9999999999986543
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00013 Score=73.41 Aligned_cols=206 Identities=22% Similarity=0.270 Sum_probs=131.9
Q ss_pred HHHHHHHHHHcCCCeEEEEecccC--CCC--CCCCchhHHHHHHHhhhccccEEEeCCccccc-cCCCCccChHHHHHHH
Q 045794 309 PVELARQYYKEGADEISFLNITGF--RDF--PLGDLPMLQVLRLTSENVFVPLTVGGGIRDFT-DANGRHYSSLEVASEY 383 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~--~~~--~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~-d~~~~~~~~~~~~~~~ 383 (578)
.++=|+.|.+.|+|.|+|-+.... ... +..-..+-.+++++.+++++|+ ||.=+. | ..+.+.-.
T Consensus 31 A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~----GVnvL~nd-------~~aalaiA 99 (254)
T PF03437_consen 31 AVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPV----GVNVLRND-------PKAALAIA 99 (254)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCE----EeeeecCC-------CHHHHHHH
Confidence 344578899999999999886432 110 0001123344556667777886 555443 2 12334445
Q ss_pred HHcCcceeec----chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCC
Q 045794 384 FRSGADKISI----GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNG 459 (578)
Q Consensus 384 l~~Ga~~vv~----gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (578)
...|++.|=+ |+..-. ..+.. .+...+-+..++.|.+ |-+--|++...
T Consensus 100 ~A~ga~FIRv~~~~g~~~~d--~G~~~----~~a~e~~r~R~~l~a~-v~ilaDV~~kh--------------------- 151 (254)
T PF03437_consen 100 AATGADFIRVNVFVGAYVTD--EGIIE----GCAGELLRYRKRLGAD-VKILADVHVKH--------------------- 151 (254)
T ss_pred HHhCCCEEEecCEEceeccc--Ccccc----ccHHHHHHHHHHcCCC-eEEEeeechhh---------------------
Confidence 6679986654 332221 12211 0112233445667776 66666654321
Q ss_pred CCcceEEEEEcccccCCCCCHHHHHHHH-HHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q 045794 460 EEYAWYQCTVNGGREGRPIGAYELAKAV-EDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFS 538 (578)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~e~~~~~-~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~ 538 (578)
+ .-..+.++.+.++.. +..++|.+++|.- .|...++.+.++++++.+++||++++|+ +.+-+.
T Consensus 152 -----------~-~~l~~~~~~~~~~~a~~~~~aDaviVtG~---~TG~~~~~~~l~~vr~~~~~PVlvGSGv-t~~Ni~ 215 (254)
T PF03437_consen 152 -----------S-SPLATRDLEEAAKDAVERGGADAVIVTGK---ATGEPPDPEKLKRVREAVPVPVLVGSGV-TPENIA 215 (254)
T ss_pred -----------c-ccCCCCCHHHHHHHHHHhcCCCEEEECCc---ccCCCCCHHHHHHHHhcCCCCEEEecCC-CHHHHH
Confidence 0 011234567777666 6778999999874 3456679999999999999999999999 778899
Q ss_pred HHHHhcCchHHhhhhhhcc-----CCCCHHHHHHHHHh
Q 045794 539 DVFRKTNASAALAAGIFHR-----KEVPIQSVKEHLYK 571 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~-----~~~~~~~~~~~l~~ 571 (578)
++++ -|||++|||.|-. ++++.+.++++++.
T Consensus 216 ~~l~--~ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm~~ 251 (254)
T PF03437_consen 216 EYLS--YADGAIVGSYFKKDGKWENPVDPERVRRFMEA 251 (254)
T ss_pred HHHH--hCCEEEEeeeeeeCCEeCCcCCHHHHHHHHHH
Confidence 9885 4999999999863 46889999988764
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.4e-06 Score=82.91 Aligned_cols=78 Identities=27% Similarity=0.358 Sum_probs=60.0
Q ss_pred CHHHHHHHHHH----cCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccc-cEEEeCCccccccCCCCccChHHHHHH
Q 045794 308 KPVELARQYYK----EGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFV-PLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 308 ~p~~~a~~~~~----~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~-pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
++.++|..+.- .|.+ +++++-... .+...|.++|+++++.++. |+++|||||+.|+ +++
T Consensus 138 ~~~~~~~~~~lA~~~~g~~-~vYle~gs~----~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~-----------a~~ 201 (232)
T PRK04169 138 DKPDIAAYAALAAEYLGMP-IVYLEYGGG----AGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQ-----------ARE 201 (232)
T ss_pred ChHHHHHHHHHHHHHcCCC-eEEEECCCC----CCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHH-----------HHH
Confidence 55566555543 2666 445555432 2346678999999998888 9999999999866 999
Q ss_pred HHHcCcceeecchhhhccc
Q 045794 383 YFRSGADKISIGSDAVYAA 401 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~ 401 (578)
++.+|||+|++||+..+++
T Consensus 202 ~l~~GAD~VVVGSai~~d~ 220 (232)
T PRK04169 202 LMAAGADTIVVGNIIEEDP 220 (232)
T ss_pred HHHhCCCEEEEChHHhhCH
Confidence 9999999999999999864
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.1e-05 Score=80.13 Aligned_cols=91 Identities=15% Similarity=0.102 Sum_probs=70.8
Q ss_pred HHHHHHHHHHc--CCcEEEEecc-------C--CC----------CCCCCC-----CHHHHHHHHhhC--CCcEEEecCC
Q 045794 480 AYELAKAVEDL--GAGEILLNCI-------D--CD----------GQGKGF-----DMDLIKLISDAV--SIPVIASSGA 531 (578)
Q Consensus 480 ~~e~~~~~~~~--G~~~ii~tdi-------~--~d----------G~~~G~-----d~~li~~l~~~~--~ipVIasGGi 531 (578)
+.++++.+.+. |++.|++++. + +. |-+.|+ .+..++++++.+ ++|||++|||
T Consensus 173 ~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI 252 (294)
T cd04741 173 FDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGV 252 (294)
T ss_pred HHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCC
Confidence 56788888888 8999996422 2 11 111222 145667887888 4999999999
Q ss_pred CCHHHHHHHHHhcCchHHhhhhhhc-cCCCCHHHHHHHHHh
Q 045794 532 GAVEHFSDVFRKTNASAALAAGIFH-RKEVPIQSVKEHLYK 571 (578)
Q Consensus 532 ~s~eDi~~l~~~~G~~gv~vgsa~~-~~~~~~~~~~~~l~~ 571 (578)
.+.+|+.+.+. +||++|+++|++. .+++.+.++++.|.+
T Consensus 253 ~s~~da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~ 292 (294)
T cd04741 253 LDGRGAFRMRL-AGASAVQVGTALGKEGPKVFARIEKELED 292 (294)
T ss_pred CCHHHHHHHHH-cCCCceeEchhhhhcCchHHHHHHHHHHh
Confidence 99999999996 9999999999988 499999999988865
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=4e-06 Score=82.83 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
...+++++++|++.|--.. .--|+.+|+ |.++++.+.+..++|||+.|||++++|+.++++ +|++||++||+++...
T Consensus 134 ~~~ak~l~~~G~~~vmPlg-~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Ame-lGAdgVlV~SAItka~ 211 (250)
T PRK00208 134 PVLAKRLEEAGCAAVMPLG-APIGSGLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIAVAG 211 (250)
T ss_pred HHHHHHHHHcCCCEeCCCC-cCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEChHhhCCC
Confidence 6789999999999883211 334566787 899999999888999999999999999999996 9999999999998644
Q ss_pred C
Q 045794 560 V 560 (578)
Q Consensus 560 ~ 560 (578)
.
T Consensus 212 d 212 (250)
T PRK00208 212 D 212 (250)
T ss_pred C
Confidence 3
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.1e-05 Score=82.81 Aligned_cols=94 Identities=13% Similarity=0.067 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC----CCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhh
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC----DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~----dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa 554 (578)
+..++++.+++.|++.|-++.-+. .....|+++++.+++++.+++||++.|++.+++++.++++..++|.|++|++
T Consensus 228 e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~ 307 (337)
T PRK13523 228 DYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIGRE 307 (337)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHH
Confidence 356888999999999998876431 1234677899999999999999999999999999999998666999999999
Q ss_pred hccCCCCHHHHHHHHHhC
Q 045794 555 FHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 555 ~~~~~~~~~~~~~~l~~~ 572 (578)
+...+.-+..+++.+...
T Consensus 308 ~iadP~~~~k~~~~~~~~ 325 (337)
T PRK13523 308 LLRNPYFPRIAAKELGFE 325 (337)
T ss_pred HHhCccHHHHHHHHcCCC
Confidence 999998888887766543
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.7e-05 Score=72.34 Aligned_cols=176 Identities=21% Similarity=0.288 Sum_probs=127.0
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
.++++...+.|++.+.+-+=+..... ......-++.++++.++|+.+- +. ++-.++.|||
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~---~~~~a~~~~~lc~~~~v~liIN----d~-------------~dlA~~~~Ad 83 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEE---YLALAEKLRALCQKYGVPLIIN----DR-------------VDLALAVGAD 83 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHH---HHHHHHHHHHHHHHhCCeEEec----Cc-------------HHHHHhCCCC
Confidence 78888888999999988766653111 1233456777888889999863 32 5667889999
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTV 469 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (578)
.|=||..-.. +.++.+.+++..+ +.+.+.
T Consensus 84 GVHlGq~D~~----------------~~~ar~~~~~~~i-IG~S~h---------------------------------- 112 (211)
T COG0352 84 GVHLGQDDMP----------------LAEARELLGPGLI-IGLSTH---------------------------------- 112 (211)
T ss_pred EEEcCCcccc----------------hHHHHHhcCCCCE-EEeecC----------------------------------
Confidence 9999975332 3566677776533 323211
Q ss_pred cccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC---CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 045794 470 NGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG---KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNA 546 (578)
Q Consensus 470 ~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~---~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~ 546 (578)
-.+.+.++++.|++.|.+-.+-.+-+. ....++.++.+.+...+|+++-||| +++.+.++++ +|+
T Consensus 113 ----------~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi-~~~nv~~v~~-~Ga 180 (211)
T COG0352 113 ----------DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGI-NLENVPEVLE-AGA 180 (211)
T ss_pred ----------CHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-hCC
Confidence 157788888999999996655443333 3447899999988888999999999 7899999996 999
Q ss_pred hHHhhhhhhccCCCCHHHHHHH
Q 045794 547 SAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 547 ~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
+||.+-|++....-....++++
T Consensus 181 ~gVAvvsai~~a~d~~~a~~~~ 202 (211)
T COG0352 181 DGVAVVSAITSAADPAAAAKAL 202 (211)
T ss_pred CeEEehhHhhcCCCHHHHHHHH
Confidence 9999999998766544444433
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.2e-05 Score=79.58 Aligned_cols=187 Identities=14% Similarity=0.210 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEec---ccCCCCC-------------CCCchhHHHHHHHhhh-ccccEEEeCCccccccCC
Q 045794 308 KPVELARQYYKEGADEISFLNI---TGFRDFP-------------LGDLPMLQVLRLTSEN-VFVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl---~~~~~~~-------------~~~~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~ 370 (578)
.-+++++.+.+.|+|.|=+ -+ |-.-||+ ..-..-+++++++++. +.+|+..=+-. +.
T Consensus 25 ~~~~~~~~l~~~Gad~iEl-GiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~-Np---- 98 (256)
T TIGR00262 25 TSLEIIKTLIEAGADALEL-GVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYY-NL---- 98 (256)
T ss_pred HHHHHHHHHHHcCCCEEEE-CCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEec-cH----
Confidence 3467788888889985543 11 1111111 1112346678888866 67886422211 11
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCcccccee
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAV 450 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~ 450 (578)
.+.|...+-++++.++|++.+++--...+.. +.+.+..+++|-+.+ ..+-
T Consensus 99 i~~~G~e~f~~~~~~aGvdgviipDlp~ee~------------~~~~~~~~~~gl~~i-~lv~----------------- 148 (256)
T TIGR00262 99 IFRKGVEEFYAKCKEVGVDGVLVADLPLEES------------GDLVEAAKKHGVKPI-FLVA----------------- 148 (256)
T ss_pred HhhhhHHHHHHHHHHcCCCEEEECCCChHHH------------HHHHHHHHHCCCcEE-EEEC-----------------
Confidence 1233334558899999999999865544422 223344566775433 3231
Q ss_pred eeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC-CCCCC---CCCCHHHHHHHHhhCCCcEE
Q 045794 451 RVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID-CDGQG---KGFDMDLIKLISDAVSIPVI 526 (578)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~-~dG~~---~G~d~~li~~l~~~~~ipVI 526 (578)
..+..+.++.+.+..-+.+.+..+. ..|.. .....+.++++++.++.||+
T Consensus 149 --------------------------P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~ 202 (256)
T TIGR00262 149 --------------------------PNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVL 202 (256)
T ss_pred --------------------------CCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEE
Confidence 1123455555555544456654542 22221 12246888999988899999
Q ss_pred EecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 527 asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
++|||++.++++++.+ .|+|||++||++.+
T Consensus 203 vgfGI~~~e~~~~~~~-~GADgvVvGSaiv~ 232 (256)
T TIGR00262 203 VGFGISKPEQVKQAID-AGADGVIVGSAIVK 232 (256)
T ss_pred EeCCCCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 9999999999999985 89999999999964
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=6e-05 Score=79.29 Aligned_cols=178 Identities=16% Similarity=0.158 Sum_probs=121.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+..+.++...+.|++.|++=+=+.... ........++++++..++++.+- +. +.-.+..|
T Consensus 158 ~ll~~l~~al~~Gv~~VQLR~K~~~~~---~~~~~a~~L~~l~~~~~~~lIIN----D~-------------vdlAl~~~ 217 (347)
T PRK02615 158 NLLEVVEAALKGGVTLVQYRDKTADDR---QRLEEAKKLKELCHRYGALFIVN----DR-------------VDIALAVD 217 (347)
T ss_pred hHHHHHHHHHHcCCCEEEECCCCCCHH---HHHHHHHHHHHHHHHhCCeEEEe----Ch-------------HHHHHHcC
Confidence 567788888888999888753332100 11223345667777778888753 32 55677889
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
+|.|=+|-..+. +.++.+..|++++ +++.+-
T Consensus 218 aDGVHLgq~dl~----------------~~~aR~llg~~~i-IG~S~H-------------------------------- 248 (347)
T PRK02615 218 ADGVHLGQEDLP----------------LAVARQLLGPEKI-IGRSTT-------------------------------- 248 (347)
T ss_pred CCEEEeChhhcC----------------HHHHHHhcCCCCE-EEEecC--------------------------------
Confidence 999999854332 2444555676654 344321
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC---CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG---KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~---~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
+ .+-++++.+.|++.|.+-.+-...+. ....++.++.+++...+||+|-||| +.+++.++.. .
T Consensus 249 -----------s-~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI-~~~ni~~l~~-~ 314 (347)
T PRK02615 249 -----------N-PEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGI-DKSNIPEVLQ-A 314 (347)
T ss_pred -----------C-HHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHH-c
Confidence 2 34456677889999987655444333 3457899999998889999999999 5899999985 9
Q ss_pred CchHHhhhhhhccCCCCHHHHHHH
Q 045794 545 NASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
|++||.+++++...+-+...++++
T Consensus 315 Ga~gVAvisaI~~a~dp~~~~~~l 338 (347)
T PRK02615 315 GAKRVAVVRAIMGAEDPKQATQEL 338 (347)
T ss_pred CCcEEEEeHHHhCCCCHHHHHHHH
Confidence 999999999998665544444433
|
|
| >PHA03366 FGAM-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=2e-05 Score=95.67 Aligned_cols=93 Identities=19% Similarity=0.227 Sum_probs=69.7
Q ss_pred CCCCcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCc-----cCCCCCCEEEECCCCCchHHHH----H----HHhhcH
Q 045794 44 TSSDSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTP-----EDILNANRLIFPGVGAFAAAMD----V----LNKTGM 109 (578)
Q Consensus 44 ~~~~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~-----~dl~~~DGlILpGGg~~~~~~~----~----l~~~~l 109 (578)
+..+|+|+|+-++ +..-.+...+|..+|+++..+... ..|++++||++|||-++.+.+. | +....+
T Consensus 1025 ~~~~prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~ 1104 (1304)
T PHA03366 1025 PDKRHRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTFLDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAV 1104 (1304)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCccccceEEEEcCCCCCcccccHHHHHHHHhhhchHH
Confidence 5678999999875 566778899999999987766422 2289999999999955543221 2 122256
Q ss_pred HHHHHHHH-hCCCCEEEEec-hHHHHhhh
Q 045794 110 AEALCAYI-EKDRPFLGICL-GLQLLFQS 136 (578)
Q Consensus 110 ~~~i~~~~-~~g~PIlGICl-G~QlLa~a 136 (578)
.+.++++. +.+.++||||- |+|+|+..
T Consensus 1105 ~~~~~~f~~r~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366 1105 RDALLRFLNRPDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred HHHHHHHHhCCCCeEEEeCcHHHHHHHHc
Confidence 67788888 45899999998 99999983
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.2e-06 Score=87.93 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC-------------CCCCCCCC-----HHHHHHHHhhC--CCcEEEecCCCCHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC-------------DGQGKGFD-----MDLIKLISDAV--SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~-------------dG~~~G~d-----~~li~~l~~~~--~ipVIasGGi~s~eDi~ 538 (578)
++.++++.+++.|++.|.+++... .|.++|+. ++.++++++.+ ++|||++|||.+.+|+.
T Consensus 217 ~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~ 296 (327)
T cd04738 217 ELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAY 296 (327)
T ss_pred HHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHH
Confidence 467899999999999999887532 23345542 68889999888 79999999999999999
Q ss_pred HHHHhcCchHHhhhhhhcc-CCCCHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHR-KEVPIQSVKEH 568 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~-~~~~~~~~~~~ 568 (578)
+++. .||++|++||++.. |+..+.++++.
T Consensus 297 e~l~-aGAd~V~vg~~~~~~gP~~~~~i~~~ 326 (327)
T cd04738 297 EKIR-AGASLVQLYTGLVYEGPGLVKRIKRE 326 (327)
T ss_pred HHHH-cCCCHHhccHHHHhhCcHHHHHHHhc
Confidence 9996 99999999999854 68877776653
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.4e-05 Score=96.53 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=69.8
Q ss_pred cCCCCCcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCc-----cCCCCCCEEEECCCCCchHHHH----HH----Hhh
Q 045794 42 RATSSDSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTP-----EDILNANRLIFPGVGAFAAAMD----VL----NKT 107 (578)
Q Consensus 42 ~~~~~~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~-----~dl~~~DGlILpGGg~~~~~~~----~l----~~~ 107 (578)
..++.+|+|+|+-++ +..-.+...+|..+|+++..+... ..+++++||+++||-++.+.+. |. ...
T Consensus 924 ~~~~~~p~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~ 1003 (1202)
T TIGR01739 924 TCPDPRHQVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFLDTFSGLIIGGASGTLDSEVGARALAAALLRNQ 1003 (1202)
T ss_pred cCCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCchhheEEEEEcCcCCCCccchHHHHHHHHhhcch
Confidence 344568999999875 567778899999999887766422 2377899999999855443221 11 123
Q ss_pred cHHHHHHHHH-hCCCCEEEEec-hHHHHhhh
Q 045794 108 GMAEALCAYI-EKDRPFLGICL-GLQLLFQS 136 (578)
Q Consensus 108 ~l~~~i~~~~-~~g~PIlGICl-G~QlLa~a 136 (578)
.+.+.++++. +.+.++||||- |+|+|+..
T Consensus 1004 ~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739 1004 AFLRDLLTFLNRPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred HHHHHHHHHHhCCCceEEEeCcHHHHHHHHc
Confidence 5677888888 45899999997 99999984
|
This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model. |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.6e-05 Score=73.24 Aligned_cols=186 Identities=18% Similarity=0.181 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+-.++|+...+.|+|.|.+===++. ......++++.+++.+++||.+= |....+ ..
T Consensus 12 ~~~~ia~~v~~~gtDaI~VGGS~gv-----t~~~~~~~v~~ik~~~~lPvilfp~~~~~i------------------~~ 68 (205)
T TIGR01769 12 EIEKIAKNAKDAGTDAIMVGGSLGI-----VESNLDQTVKKIKKITNLPVILFPGNVNGL------------------SR 68 (205)
T ss_pred HHHHHHHHHHhcCCCEEEEcCcCCC-----CHHHHHHHHHHHHhhcCCCEEEECCCcccc------------------Cc
Confidence 4556778888999998876211111 11344567888888789999864 333322 24
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
+||.+.+=|..=.+++.|+- ..=.+++ ++||.+ ++. .+|+. . ++++
T Consensus 69 ~aD~~~~~sllns~~~~~i~-------g~~~~~~~~~~~~~~e-~ip-----~gYiv------------~--~~~~---- 117 (205)
T TIGR01769 69 YADAVFFMSLLNSADTYFIV-------GAQILGAITILKLNLE-VIP-----MAYLI------------V--GPGG---- 117 (205)
T ss_pred CCCEEEEEEeecCCCcchhh-------hHHHHHHHHHHHcCCc-ccc-----eEEEE------------E--CCCC----
Confidence 68877775544334455531 1112233 677743 221 01110 0 0000
Q ss_pred eEEEEEccccc-CCCCC---HHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q 045794 464 WYQCTVNGGRE-GRPIG---AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 464 ~~~~~~~g~~~-~~~~~---~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~ 539 (578)
.+.--+..+ -.+.+ ...++..++.+|++.+-+-+ .+|.....+.++++++++.+++|++++|||++.+++++
T Consensus 118 --~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~--~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~ 193 (205)
T TIGR01769 118 --AVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEA--GSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYE 193 (205)
T ss_pred --ceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEc--CCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHH
Confidence 111011111 11122 44677778888998766633 35676667899999999999999999999999999999
Q ss_pred HHHhcCchHHhhh
Q 045794 540 VFRKTNASAALAA 552 (578)
Q Consensus 540 l~~~~G~~gv~vg 552 (578)
+++ .|+|++++|
T Consensus 194 l~~-~GAD~VVVG 205 (205)
T TIGR01769 194 IVL-AGADAIVTG 205 (205)
T ss_pred HHH-cCCCEEEeC
Confidence 985 799999876
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=85.57 Aligned_cols=75 Identities=24% Similarity=0.254 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+-.++++.+.+.|++.| .++.......+.....+...+.++.++.++||.+ |+|.+.++ +++++++
T Consensus 141 ~~~~e~a~~l~eaGvd~I-~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~-----------A~~l~~a 207 (368)
T PRK08649 141 QRAQELAPTVVEAGVDLF-VIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV-GGCVTYTT-----------ALHLMRT 207 (368)
T ss_pred cCHHHHHHHHHHCCCCEE-EEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE-eCCCCHHH-----------HHHHHHc
Confidence 356799999999999854 4554211111111111345566677778999966 77999866 9999999
Q ss_pred Ccceeecc
Q 045794 387 GADKISIG 394 (578)
Q Consensus 387 Ga~~vv~g 394 (578)
|||.|.+|
T Consensus 208 GAD~V~VG 215 (368)
T PRK08649 208 GAAGVLVG 215 (368)
T ss_pred CCCEEEEC
Confidence 99999887
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=84.73 Aligned_cols=122 Identities=13% Similarity=0.131 Sum_probs=89.9
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++++.+..|.+ +.+++++.... ..-.||.. -+..++++.+++.|+
T Consensus 203 ~EiI~aIR~avG~d-~~v~vris~~~----------------------------~~~~g~~~---eea~~ia~~Le~~Gv 250 (338)
T cd04733 203 LEIYDAIRAAVGPG-FPVGIKLNSAD----------------------------FQRGGFTE---EDALEVVEALEEAGV 250 (338)
T ss_pred HHHHHHHHHHcCCC-CeEEEEEcHHH----------------------------cCCCCCCH---HHHHHHHHHHHHcCC
Confidence 48899999989854 56667653210 00123322 145789999999999
Q ss_pred cEEEEeccCCCCCC------------CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCC
Q 045794 493 GEILLNCIDCDGQG------------KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 493 ~~ii~tdi~~dG~~------------~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~ 560 (578)
+.|-++....+... .+..++..+++++.+++||+++|++.+++++.++++..+||.|++|+++...+.
T Consensus 251 d~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~ 330 (338)
T cd04733 251 DLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPD 330 (338)
T ss_pred CEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCcc
Confidence 99887765432221 233468888999999999999999999999999998667999999999998887
Q ss_pred CHHHHH
Q 045794 561 PIQSVK 566 (578)
Q Consensus 561 ~~~~~~ 566 (578)
-+..++
T Consensus 331 ~~~k~~ 336 (338)
T cd04733 331 LPNKLL 336 (338)
T ss_pred HHHHHh
Confidence 666554
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.3e-05 Score=79.43 Aligned_cols=186 Identities=16% Similarity=0.241 Sum_probs=112.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEec---ccCCCCCC-------------CCchhHHHHHHHh-hhccccEEEeCCccccccCC
Q 045794 308 KPVELARQYYKEGADEISFLNI---TGFRDFPL-------------GDLPMLQVLRLTS-ENVFVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl---~~~~~~~~-------------~~~~~~~~i~~i~-~~~~~pi~~gGGir~~~d~~ 370 (578)
.-.++++.+.+.|+|.|=+ -+ |-.-||+. .-..-++.+++++ +...+|+.+=+-.+.+
T Consensus 27 ~~~~~~~~l~~~Gad~iEl-GiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i---- 101 (258)
T PRK13111 27 TSLEIIKALVEAGADIIEL-GIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPI---- 101 (258)
T ss_pred HHHHHHHHHHHCCCCEEEE-CCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHH----
Confidence 4456777888888885543 11 11111110 1113467788888 4467886554422221
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCcccccee
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAV 450 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~ 450 (578)
+.|.--+-++++.++|++-+++--..++.. +.+.+.++++|-+-|.+ +-
T Consensus 102 -~~~G~e~f~~~~~~aGvdGviipDLp~ee~------------~~~~~~~~~~gl~~I~l-va----------------- 150 (258)
T PRK13111 102 -FQYGVERFAADAAEAGVDGLIIPDLPPEEA------------EELRAAAKKHGLDLIFL-VA----------------- 150 (258)
T ss_pred -hhcCHHHHHHHHHHcCCcEEEECCCCHHHH------------HHHHHHHHHcCCcEEEE-eC-----------------
Confidence 111111238888899999999964333321 23445557787554432 21
Q ss_pred eeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc-CCCCCCCCC--CH-HHHHHHHhhCCCcEE
Q 045794 451 RVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI-DCDGQGKGF--DM-DLIKLISDAVSIPVI 526 (578)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi-~~dG~~~G~--d~-~li~~l~~~~~ipVI 526 (578)
.-+..+.++.+.+..-+.|-+..+ ...|..++. +. +.++++++.+++||+
T Consensus 151 --------------------------p~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~ 204 (258)
T PRK13111 151 --------------------------PTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVA 204 (258)
T ss_pred --------------------------CCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEE
Confidence 113356667677776554444333 224443332 33 588999998899999
Q ss_pred EecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 527 asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+++||++.+|++++.+ .||||+|||++..
T Consensus 205 vGfGI~~~e~v~~~~~--~ADGviVGSaiv~ 233 (258)
T PRK13111 205 VGFGISTPEQAAAIAA--VADGVIVGSALVK 233 (258)
T ss_pred EEcccCCHHHHHHHHH--hCCEEEEcHHHHH
Confidence 9999999999999985 4999999999963
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.2e-05 Score=86.16 Aligned_cols=184 Identities=16% Similarity=0.106 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhh----ccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSEN----VFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~----~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
...+.++.+.+.+...+-++|=++..- +--...++++..... ..-.+.+|.-+...++ ..+.++.|
T Consensus 164 sL~eAl~lM~~~~i~~LPVVD~~g~Lv---GIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~-------~~~ra~~L 233 (475)
T TIGR01303 164 EPRKAFDLLEHAPRDVAPLVDADGTLA---GILTRTGALRATIYTPATDAAGRLRIGAAVGINGD-------VGGKAKAL 233 (475)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCeEE---EEEEHHHHHHHHhCCchhhhccCceehheeeeCcc-------HHHHHHHH
Confidence 455677888889999998887433100 101112333322211 0012334433333222 34779999
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.+.|++.|++.++- .++ ..+ .++++++.+.|..--|++ +
T Consensus 234 v~aGVd~i~~D~a~-g~~-~~~-------~~~i~~i~~~~~~~~vi~--g------------------------------ 272 (475)
T TIGR01303 234 LDAGVDVLVIDTAH-GHQ-VKM-------ISAIKAVRALDLGVPIVA--G------------------------------ 272 (475)
T ss_pred HHhCCCEEEEeCCC-CCc-HHH-------HHHHHHHHHHCCCCeEEE--e------------------------------
Confidence 99999999998877 333 444 388999999895322222 1
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEE--------EeccCCCCCCCCC-----CHHHHHHHHhhCCCcEEEecC
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEIL--------LNCIDCDGQGKGF-----DMDLIKLISDAVSIPVIASSG 530 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii--------~tdi~~dG~~~G~-----d~~li~~l~~~~~ipVIasGG 530 (578)
++...+-++.+.+.|++.|- +|-... +.-|. +++..+..++ .++||||.||
T Consensus 273 -------------~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~--~~~g~~~~~a~~~~~~~~~~-~~~~viadGg 336 (475)
T TIGR01303 273 -------------NVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMM--TGVGRPQFSAVLECAAEARK-LGGHVWADGG 336 (475)
T ss_pred -------------ccCCHHHHHHHHHhCCCEEEECCcCCccccCccc--cCCCCchHHHHHHHHHHHHH-cCCcEEEeCC
Confidence 23346788999999999987 543322 22232 2333333333 4899999999
Q ss_pred CCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 531 AGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 531 i~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
|++..|+.+++. +||++||+|+.|....
T Consensus 337 i~~~~di~kala-~GA~~vm~g~~~ag~~ 364 (475)
T TIGR01303 337 VRHPRDVALALA-AGASNVMVGSWFAGTY 364 (475)
T ss_pred CCCHHHHHHHHH-cCCCEEeechhhcccc
Confidence 999999999996 9999999999986543
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.2e-05 Score=71.85 Aligned_cols=161 Identities=17% Similarity=0.145 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++++...+.|++.+-+.+=+. ...++++.+.+.... +.+| |-+-.. ++++..++
T Consensus 24 ~~~~~~~~~~~~~Gv~~vqlr~k~~---------~~~e~~~~~~~~~~~-~~~g~gtvl~~-----------d~~~~A~~ 82 (187)
T PRK07455 24 ELGLQMAEAVAAGGMRLIEITWNSD---------QPAELISQLREKLPE-CIIGTGTILTL-----------EDLEEAIA 82 (187)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCC---------CHHHHHHHHHHhCCC-cEEeEEEEEcH-----------HHHHHHHH
Confidence 4667889999999999888875433 124556655544332 3344 344444 35999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.|+++..-. +. .++++..+... +.
T Consensus 83 ~gAdgv~~p~~~~---------------~~-~~~~~~~~~~~-i~----------------------------------- 110 (187)
T PRK07455 83 AGAQFCFTPHVDP---------------EL-IEAAVAQDIPI-IP----------------------------------- 110 (187)
T ss_pred cCCCEEECCCCCH---------------HH-HHHHHHcCCCE-Ec-----------------------------------
Confidence 9999998885332 22 34455554321 11
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
| --++.| +.++.+.|++.+-+... .+.. ..+.++.++..+ ++|+++.||| +++++.++++ .
T Consensus 111 -----G-----~~t~~e-~~~A~~~Gadyv~~Fpt---~~~~--G~~~l~~~~~~~~~ipvvaiGGI-~~~n~~~~l~-a 172 (187)
T PRK07455 111 -----G-----ALTPTE-IVTAWQAGASCVKVFPV---QAVG--GADYIKSLQGPLGHIPLIPTGGV-TLENAQAFIQ-A 172 (187)
T ss_pred -----C-----cCCHHH-HHHHHHCCCCEEEECcC---Cccc--CHHHHHHHHhhCCCCcEEEeCCC-CHHHHHHHHH-C
Confidence 1 013344 56666799999988552 1222 457789998888 6999999999 7899999996 9
Q ss_pred CchHHhhhhhhccC
Q 045794 545 NASAALAAGIFHRK 558 (578)
Q Consensus 545 G~~gv~vgsa~~~~ 558 (578)
|+++|.++|++..+
T Consensus 173 Ga~~vav~s~i~~~ 186 (187)
T PRK07455 173 GAIAVGLSGQLFPK 186 (187)
T ss_pred CCeEEEEehhcccC
Confidence 99999999988754
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00015 Score=71.31 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=112.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccc-c-EEEe-CCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFV-P-LTVG-GGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~-p-i~~g-GGir~~~d~~~~~~~~~~~~~~~ 383 (578)
.+-+.+++.+.+.|++-+=|. ++. ..-++.|++++++..- | +.+| |.|.+.++ +++.
T Consensus 25 ~~a~~~~~al~~~Gi~~iEit-~~~--------~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~-----------~~~a 84 (213)
T PRK06552 25 EEALKISLAVIKGGIKAIEVT-YTN--------PFASEVIKELVELYKDDPEVLIGAGTVLDAVT-----------ARLA 84 (213)
T ss_pred HHHHHHHHHHHHCCCCEEEEE-CCC--------ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHH-----------HHHH
Confidence 477789999999998755443 222 2237889999887642 2 7788 77888755 9999
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.++||+.++- -.+ ++++++. +.+.|- ..
T Consensus 85 ~~aGA~Fivs--P~~-------------~~~v~~~-~~~~~i----~~-------------------------------- 112 (213)
T PRK06552 85 ILAGAQFIVS--PSF-------------NRETAKI-CNLYQI----PY-------------------------------- 112 (213)
T ss_pred HHcCCCEEEC--CCC-------------CHHHHHH-HHHcCC----CE--------------------------------
Confidence 9999998872 122 2455554 455541 11
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVS-IPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~-ipVIasGGi~s~eDi~~l~~ 542 (578)
+.| -.++.|+ .++.+.|++.+-+...+ ..| .+.++.++..++ +|+++.||| +.+.+.+.++
T Consensus 113 -----iPG-----~~T~~E~-~~A~~~Gad~vklFPa~----~~G--~~~ik~l~~~~p~ip~~atGGI-~~~N~~~~l~ 174 (213)
T PRK06552 113 -----LPG-----CMTVTEI-VTALEAGSEIVKLFPGS----TLG--PSFIKAIKGPLPQVNVMVTGGV-NLDNVKDWFA 174 (213)
T ss_pred -----ECC-----cCCHHHH-HHHHHcCCCEEEECCcc----cCC--HHHHHHHhhhCCCCEEEEECCC-CHHHHHHHHH
Confidence 111 1234444 55568999999986522 223 677888888775 999999999 5799999996
Q ss_pred hcCchHHhhhhhhccC
Q 045794 543 KTNASAALAAGIFHRK 558 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~~ 558 (578)
.|++++.+|+.++..
T Consensus 175 -aGa~~vavgs~l~~~ 189 (213)
T PRK06552 175 -AGADAVGIGGELNKL 189 (213)
T ss_pred -CCCcEEEEchHHhCc
Confidence 999999999998754
|
|
| >PRK05282 (alpha)-aspartyl dipeptidase; Validated | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.1e-05 Score=78.37 Aligned_cols=90 Identities=17% Similarity=0.318 Sum_probs=71.4
Q ss_pred CcEEEEEECCC------CCHHHHHHHHHHCCCeEEEeCCccC----CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHH
Q 045794 47 DSVVTLLDYGA------GNVRSVRNAIRHLGFGIKDVQTPED----ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAY 116 (578)
Q Consensus 47 ~~~I~vld~~~------g~~~~i~~~L~~~Gv~v~~v~~~~d----l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~ 116 (578)
+++|+++-.-+ .+...+.++++.+|+++..++..++ +.++|+|+++||.. ...+..++..++.+.|+++
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt-~~l~~~l~~~gl~~~l~~~ 109 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNT-FQLLKQLYERGLLAPIREA 109 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccH-HHHHHHHHHCCcHHHHHHH
Confidence 45577764321 2456677899999999988877766 78999999999764 4455667777899999999
Q ss_pred HhCCCCEEEEechHHHHhhhc
Q 045794 117 IEKDRPFLGICLGLQLLFQSS 137 (578)
Q Consensus 117 ~~~g~PIlGIClG~QlLa~a~ 137 (578)
+++|+|++|+|.|..+++..+
T Consensus 110 ~~~G~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 110 VKNGTPYIGWSAGANVAGPTI 130 (233)
T ss_pred HHCCCEEEEECHHHHhhhccc
Confidence 999999999999999988854
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.11 E-value=3e-05 Score=82.19 Aligned_cols=76 Identities=25% Similarity=0.283 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+..++++.+.+.|++.|.+ +-.-....+.....+...|.++.++.++||.+ |++.+.++ +++++++
T Consensus 142 ~~~~e~a~~l~eAGad~I~i-hgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~-----------A~~~~~a 208 (369)
T TIGR01304 142 QNAREIAPIVVKAGADLLVI-QGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGVNDYTT-----------ALHLMRT 208 (369)
T ss_pred cCHHHHHHHHHHCCCCEEEE-eccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCCCCHHH-----------HHHHHHc
Confidence 37889999999999996554 32111001100012345567777788999976 78999876 9999999
Q ss_pred Ccceeecch
Q 045794 387 GADKISIGS 395 (578)
Q Consensus 387 Ga~~vv~gt 395 (578)
|||-|++|.
T Consensus 209 GaDgV~~G~ 217 (369)
T TIGR01304 209 GAAGVIVGP 217 (369)
T ss_pred CCCEEEECC
Confidence 999998664
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.1e-05 Score=73.50 Aligned_cols=185 Identities=16% Similarity=0.159 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++|+...+. +.++-..-..-. ..=++.|+.+++.+ +-+|..+.-+-+.-++ .++-.++
T Consensus 16 ~~Ai~~a~~v~~~----~diiEvGTpLik----~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~---------e~~ma~~ 78 (217)
T COG0269 16 EEAIEIAEEVADY----VDIIEVGTPLIK----AEGMRAVRALRELFPDKIIVADLKTADAGAI---------EARMAFE 78 (217)
T ss_pred HHHHHHHHHhhhc----ceEEEeCcHHHH----HhhHHHHHHHHHHCCCCeEEeeeeecchhHH---------HHHHHHH
Confidence 4555666655433 555555321100 11157788888765 4455554444443331 2788999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|||.+.+-.++-. ... ...-+.+++||. -+-+|.-+
T Consensus 79 aGAd~~tV~g~A~~---~TI--------~~~i~~A~~~~~---~v~iDl~~----------------------------- 115 (217)
T COG0269 79 AGADWVTVLGAADD---ATI--------KKAIKVAKEYGK---EVQIDLIG----------------------------- 115 (217)
T ss_pred cCCCEEEEEecCCH---HHH--------HHHHHHHHHcCC---eEEEEeec-----------------------------
Confidence 99998877443332 111 223344577873 34556443
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe-ccCCCCCCCCCC--HHHHHHHHhhCC--CcEEEecCCCCHHHHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLN-CIDCDGQGKGFD--MDLIKLISDAVS--IPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t-di~~dG~~~G~d--~~li~~l~~~~~--ipVIasGGi~s~eDi~~l 540 (578)
..++.+.+++++++|++.+++| +++.. ..|.. ++.+..+++..+ .+|-+.||| +++++..+
T Consensus 116 -----------~~~~~~~~~~l~~~gvd~~~~H~g~D~q--~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI-~~~~i~~~ 181 (217)
T COG0269 116 -----------VWDPEQRAKWLKELGVDQVILHRGRDAQ--AAGKSWGEDDLEKIKKLSDLGAKVAVAGGI-TPEDIPLF 181 (217)
T ss_pred -----------CCCHHHHHHHHHHhCCCEEEEEecccHh--hcCCCccHHHHHHHHHhhccCceEEEecCC-CHHHHHHH
Confidence 2367889999999999999988 34444 24433 356666666554 799999999 78999999
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
.. .|++-+++|+++-...-+-..++
T Consensus 182 ~~-~~~~ivIvGraIt~a~dp~~~a~ 206 (217)
T COG0269 182 KG-IGADIVIVGRAITGAKDPAEAAR 206 (217)
T ss_pred hc-CCCCEEEECchhcCCCCHHHHHH
Confidence 85 89999999999976655443333
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.8e-05 Score=84.07 Aligned_cols=185 Identities=20% Similarity=0.272 Sum_probs=121.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh------hccccEEEeCCccccccCCCCccChHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE------NVFVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~------~~~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
.+..+.++.+.+.+...+-++|=++..-| -...+.|.+... .-.-.+.+|.++...+ .++.+
T Consensus 180 ~~l~eAl~lM~e~~i~~LPVVD~~g~LvG----IIT~~Dilk~~~~P~a~~d~~grL~V~~av~~~~--------~~~ra 247 (502)
T PRK07107 180 TTLKEANDIIWDHKLNTLPIVDKNGNLVY----LVFRKDYDSHKENPLELLDSSKRYVVGAGINTRD--------YAERV 247 (502)
T ss_pred CcHHHHHHHHHHcCCCEEEEEcCCCeEEE----EEEhHHHHhcccChhhhhhhccCeeeeeccChhh--------HHHHH
Confidence 35567788888899999999984321000 001111111100 1123566788885432 36889
Q ss_pred HHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCC
Q 045794 381 SEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGE 460 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (578)
+.|.++|+|.++|.++--.+ .++ .+.++++.+.|+....+. . |
T Consensus 248 ~~Lv~aGvd~i~vd~a~g~~--~~~-------~~~i~~ir~~~~~~~~V~-----a----------------------G- 290 (502)
T PRK07107 248 PALVEAGADVLCIDSSEGYS--EWQ-------KRTLDWIREKYGDSVKVG-----A----------------------G- 290 (502)
T ss_pred HHHHHhCCCeEeecCccccc--HHH-------HHHHHHHHHhCCCCceEE-----e----------------------c-
Confidence 99999999999998433321 122 378899999997332222 1 1
Q ss_pred CcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCCC-CHHHHHHHHhhC-------C--Cc
Q 045794 461 EYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKGF-DMDLIKLISDAV-------S--IP 524 (578)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G~-d~~li~~l~~~~-------~--ip 524 (578)
++-..+-++.+.+.|++.|.+- ..+|.-+.-|+ -+..+.+++++. + +|
T Consensus 291 ----------------nV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~ 354 (502)
T PRK07107 291 ----------------NVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIP 354 (502)
T ss_pred ----------------cccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcce
Confidence 2334678888899999998751 23444454553 566666666543 3 89
Q ss_pred EEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 525 VIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 525 VIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
||+-|||++.-|+.+++. +||++||+|+.|..
T Consensus 355 viadgGir~~gdi~KAla-~GA~~vm~G~~~ag 386 (502)
T PRK07107 355 ICSDGGIVYDYHMTLALA-MGADFIMLGRYFAR 386 (502)
T ss_pred EEEcCCCCchhHHHHHHH-cCCCeeeeChhhhc
Confidence 999999999999999995 99999999999965
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00015 Score=71.59 Aligned_cols=188 Identities=16% Similarity=0.151 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
...+.++...+.|++.||+=.-|+... .+....++.++++.+.+..++.+ .+... ...+.++.+.++|
T Consensus 17 ~~~~~~~~~~~~G~~~i~l~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~v--~l~v~--------d~~~~i~~~~~~g 84 (220)
T PRK05581 17 RLGEEVKAVEAAGADWIHVDVMDGHFV--PNLTIGPPVVEAIRKVTKLPLDV--HLMVE--------NPDRYVPDFAKAG 84 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeCccCCcC--CCcCcCHHHHHHHHhcCCCcEEE--EeeeC--------CHHHHHHHHHHcC
Confidence 344667888889999999843333210 01112467788887655423222 22221 1223477788999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
++.|.+--..... . .+.++.+ +.+| -++.+++..
T Consensus 85 ~d~v~vh~~~~~~---~--------~~~~~~~-~~~~-~~~g~~~~~--------------------------------- 118 (220)
T PRK05581 85 ADIITFHVEASEH---I--------HRLLQLI-KSAG-IKAGLVLNP--------------------------------- 118 (220)
T ss_pred CCEEEEeeccchh---H--------HHHHHHH-HHcC-CEEEEEECC---------------------------------
Confidence 9997762221111 1 1233333 4455 234444320
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHH---HHhhCC-----CcEEEecCCCCHHHHHH
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKL---ISDAVS-----IPVIASSGAGAVEHFSD 539 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~---l~~~~~-----ipVIasGGi~s~eDi~~ 539 (578)
. +..+.++.+.+ +++.+.+..+...++.+..+...++. +++..+ .+|.+.|||+. +++.+
T Consensus 119 ---------~-t~~e~~~~~~~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~ 186 (220)
T PRK05581 119 ---------A-TPLEPLEDVLD-LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKE 186 (220)
T ss_pred ---------C-CCHHHHHHHHh-hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHH
Confidence 0 12455555543 37877776664444444445544444 433322 33568899966 89999
Q ss_pred HHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 540 VFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
+.+ .|++++++||++.+.+-+...++
T Consensus 187 l~~-~GaD~vvvgSai~~~~d~~~~~~ 212 (220)
T PRK05581 187 CAE-AGADVFVAGSAVFGAPDYKEAID 212 (220)
T ss_pred HHH-cCCCEEEEChhhhCCCCHHHHHH
Confidence 985 89999999999986554333333
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=98.10 E-value=3e-05 Score=81.99 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHcC-CcEEEEeccCCC------------CCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 045794 479 GAYELAKAVEDLG-AGEILLNCIDCD------------GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTN 545 (578)
Q Consensus 479 ~~~e~~~~~~~~G-~~~ii~tdi~~d------------G~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G 545 (578)
+..++++.+++.| ++.|-++.-... ....++++++.+.+++.+++|||++|++.+++++.++++..+
T Consensus 229 e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~ 308 (343)
T cd04734 229 EALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGH 308 (343)
T ss_pred HHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCC
Confidence 3578999999998 898887532111 122355789999999999999999999999999999998777
Q ss_pred chHHhhhhhhccCCCCHHHHH
Q 045794 546 ASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 546 ~~gv~vgsa~~~~~~~~~~~~ 566 (578)
+|+|++|+++...+.-+..++
T Consensus 309 ~D~V~~gR~~ladP~l~~k~~ 329 (343)
T cd04734 309 ADMVGMTRAHIADPHLVAKAR 329 (343)
T ss_pred CCeeeecHHhHhCccHHHHHH
Confidence 999999999998887666554
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.7e-05 Score=73.37 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=57.9
Q ss_pred HHHHHHHcCCcEEEEeccCCCCCCCC---CCH----HHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhh
Q 045794 483 LAKAVEDLGAGEILLNCIDCDGQGKG---FDM----DLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 483 ~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~----~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa 554 (578)
.++.+.+.+.+.|-+..+..-|+..+ ... +.++.+++.. ++||+++|||++.+++..+++ .|+|||+||++
T Consensus 126 ~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~-~gadGvlVGsa 204 (223)
T PRK04302 126 TSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALE-LGADGVLLASG 204 (223)
T ss_pred HHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHc-CCCCEEEEehH
Confidence 44456777888777777655555444 222 3344465533 689999999999999999985 89999999999
Q ss_pred hccCCCCHH
Q 045794 555 FHRKEVPIQ 563 (578)
Q Consensus 555 ~~~~~~~~~ 563 (578)
+...+....
T Consensus 205 ~l~~~~~~~ 213 (223)
T PRK04302 205 VVKAKDPEA 213 (223)
T ss_pred HhCCcCHHH
Confidence 987654333
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00015 Score=71.96 Aligned_cols=177 Identities=14% Similarity=0.104 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHcC-CCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEG-ADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g-~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+.++.++...+.| ++.|.+=+=+.... .......-++++++..++++.+- +. ++-.++.
T Consensus 27 ~~~~~l~~al~~G~v~~vQlR~K~l~~~---~~~~~a~~l~~l~~~~gv~liIN----d~-------------~dlA~~~ 86 (221)
T PRK06512 27 ELAKLLRAALQGGDVASVILPQYGLDEA---TFQKQAEKLVPVIQEAGAAALIA----GD-------------SRIAGRV 86 (221)
T ss_pred cHHHHHHHHHcCCCccEEEEeCCCCCHH---HHHHHHHHHHHHHHHhCCEEEEe----CH-------------HHHHHHh
Confidence 5677888888889 68888753332100 01122344555666668999863 32 5567788
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|||.|=+|..... +.++.++.|++.+ +++.+-+
T Consensus 87 ~adGVHLg~~d~~----------------~~~~r~~~~~~~i-iG~s~~~------------------------------ 119 (221)
T PRK06512 87 KADGLHIEGNLAA----------------LAEAIEKHAPKMI-VGFGNLR------------------------------ 119 (221)
T ss_pred CCCEEEECccccC----------------HHHHHHhcCCCCE-EEecCCC------------------------------
Confidence 9999988853221 3566667776544 3332111
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC--CCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD--GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d--G~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
+ .+-+.++.+.|++.+.+-.+-.. .......+++++.+++.+++||+|-||| +.+++.++.+ .
T Consensus 120 ------------s-~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~-~ 184 (221)
T PRK06512 120 ------------D-RHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAE-T 184 (221)
T ss_pred ------------C-HHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHH-h
Confidence 1 23345567899999997655311 1112235788888888889999999999 8899999985 9
Q ss_pred CchHHhhhhhhccCCCCHHHHH
Q 045794 545 NASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
|++||.+-|++...+-+...++
T Consensus 185 GA~giAvisai~~~~dp~~a~~ 206 (221)
T PRK06512 185 GAEFVALERAVFDAHDPPLAVA 206 (221)
T ss_pred CCCEEEEhHHhhCCCCHHHHHH
Confidence 9999999999986554333333
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0001 Score=80.29 Aligned_cols=187 Identities=20% Similarity=0.186 Sum_probs=128.0
Q ss_pred EecCCHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 304 RNLGKPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 304 ~~~~~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
...-||.++|+.| +.||..|.++ |=.-+ +| +++.++++++.+.+||.- ++ ||.-. -++.+
T Consensus 67 ~~~~d~~~~a~~y-~~gA~aiSVlTe~~~F-~G------s~~~l~~vr~~v~~PvLr----KD------Fiid~-~QI~e 127 (454)
T PRK09427 67 RDDFDPAEIARVY-KHYASAISVLTDEKYF-QG------SFDFLPIVRAIVTQPILC----KD------FIIDP-YQIYL 127 (454)
T ss_pred CCCCCHHHHHHHH-HcCCeEEEEecCcCcC-CC------CHHHHHHHHHhCCCCEEe----cc------ccCCH-HHHHH
Confidence 3345999999999 8899888774 43333 21 266777888888899953 22 22222 23666
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
...+|||-|.+=..++.+ ..+ +.+-+.+...|-+.+| -+
T Consensus 128 a~~~GADavLLI~~~L~~-~~l---------~~l~~~a~~lGl~~lv-Ev------------------------------ 166 (454)
T PRK09427 128 ARYYGADAILLMLSVLDD-EQY---------RQLAAVAHSLNMGVLT-EV------------------------------ 166 (454)
T ss_pred HHHcCCCchhHHHHhCCH-HHH---------HHHHHHHHHcCCcEEE-EE------------------------------
Confidence 667899999887777763 112 3344556778855322 11
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l 540 (578)
+ + .+-++++.+.|++-|-+++++-.- + -.|++...++.... ++.+|+.+||.+++|+..+
T Consensus 167 -------h------~---~~El~~al~~~a~iiGiNnRdL~t-~-~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~ 228 (454)
T PRK09427 167 -------S------N---EEELERAIALGAKVIGINNRNLRD-L-SIDLNRTRELAPLIPADVIVISESGIYTHAQVREL 228 (454)
T ss_pred -------C------C---HHHHHHHHhCCCCEEEEeCCCCcc-c-eECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH
Confidence 1 1 345566677899887788877652 2 25777777776655 5678999999999999998
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
. .|++|++||+++...+-+-..+++++.
T Consensus 229 ~--~~~davLiG~~lm~~~d~~~~~~~L~~ 256 (454)
T PRK09427 229 S--PFANGFLIGSSLMAEDDLELAVRKLIL 256 (454)
T ss_pred H--hcCCEEEECHHHcCCCCHHHHHHHHhc
Confidence 5 379999999999988876666666644
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00016 Score=71.09 Aligned_cols=172 Identities=14% Similarity=0.181 Sum_probs=115.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+-+++++.+.+.|++-|=|. ++. ..-++.|++++++.. .+.+| |-|.+. ++++..++
T Consensus 27 ~~a~~i~~al~~~Gi~~iEit-l~~--------~~~~~~I~~l~~~~p-~~~IGAGTVl~~-----------~~a~~a~~ 85 (212)
T PRK05718 27 EDAVPLAKALVAGGLPVLEVT-LRT--------PAALEAIRLIAKEVP-EALIGAGTVLNP-----------EQLAQAIE 85 (212)
T ss_pred HHHHHHHHHHHHcCCCEEEEe-cCC--------ccHHHHHHHHHHHCC-CCEEEEeeccCH-----------HHHHHHHH
Confidence 477889999999999977666 433 123788999988765 46677 445554 45999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.++.-. + ++++++.. .+++- ..
T Consensus 86 aGA~FivsP~--~-------------~~~vi~~a-~~~~i----~~---------------------------------- 111 (212)
T PRK05718 86 AGAQFIVSPG--L-------------TPPLLKAA-QEGPI----PL---------------------------------- 111 (212)
T ss_pred cCCCEEECCC--C-------------CHHHHHHH-HHcCC----CE----------------------------------
Confidence 9999877632 2 23455554 44431 11
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
+.| -.++.| +.++.++|++.+-+.+.+.-| ....++.++... .+|+++.||| +.+++.+.++ .
T Consensus 112 ---iPG-----~~TptE-i~~a~~~Ga~~vKlFPa~~~g-----g~~~lk~l~~p~p~~~~~ptGGV-~~~ni~~~l~-a 175 (212)
T PRK05718 112 ---IPG-----VSTPSE-LMLGMELGLRTFKFFPAEASG-----GVKMLKALAGPFPDVRFCPTGGI-SPANYRDYLA-L 175 (212)
T ss_pred ---eCC-----CCCHHH-HHHHHHCCCCEEEEccchhcc-----CHHHHHHHhccCCCCeEEEeCCC-CHHHHHHHHh-C
Confidence 111 235666 788999999999998744332 456777777655 6999999999 5699999985 7
Q ss_pred CchHHhhhhhhccCCC----CHHHHHHHH
Q 045794 545 NASAALAAGIFHRKEV----PIQSVKEHL 569 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~----~~~~~~~~l 569 (578)
|...++.|+.+..... .++++.+..
T Consensus 176 g~v~~vggs~L~~~~~~~~~~~~~i~~~a 204 (212)
T PRK05718 176 PNVLCIGGSWMVPKDAIENGDWDRITRLA 204 (212)
T ss_pred CCEEEEEChHhCCcchhccccHHHHHHHH
Confidence 8666666887765332 344455443
|
|
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.6e-05 Score=72.02 Aligned_cols=166 Identities=18% Similarity=0.229 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+-++.++...+.|++.+++=+=+.... ......+.+.+++++.++++.+.. . .+-+.+.
T Consensus 12 ~~~~~~l~~~~~~gv~~v~lR~k~~~~~---~~~~~a~~l~~~~~~~~~~liin~----~-------------~~la~~~ 71 (180)
T PF02581_consen 12 DDFLEQLEAALAAGVDLVQLREKDLSDE---ELLELARRLAELCQKYGVPLIIND----R-------------VDLALEL 71 (180)
T ss_dssp CHHHHHHHHHHHTT-SEEEEE-SSS-HH---HHHHHHHHHHHHHHHTTGCEEEES------------------HHHHHHC
T ss_pred chHHHHHHHHHHCCCcEEEEcCCCCCcc---HHHHHHHHHHHHhhcceEEEEecC----C-------------HHHHHhc
Confidence 4677888888899999888866443110 112223445555566678998644 2 5567889
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|++.|=++..... ..++.+.+++.. +++..+.
T Consensus 72 ~~dGvHl~~~~~~----------------~~~~r~~~~~~~-~ig~S~h------------------------------- 103 (180)
T PF02581_consen 72 GADGVHLGQSDLP----------------PAEARKLLGPDK-IIGASCH------------------------------- 103 (180)
T ss_dssp T-SEEEEBTTSSS----------------HHHHHHHHTTTS-EEEEEES-------------------------------
T ss_pred CCCEEEecccccc----------------hHHhhhhcccce-EEEeecC-------------------------------
Confidence 9999999874432 234445455443 3333321
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC---CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG---KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRK 543 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~---~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~ 543 (578)
+ .+-++++.+.|++.+.+-.+-..-+. ....++.++++++...+||+|-||| +++++.++.+
T Consensus 104 ------------~-~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~~- 168 (180)
T PF02581_consen 104 ------------S-LEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI-TPENIPELRE- 168 (180)
T ss_dssp ------------S-HHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHH-
T ss_pred ------------c-HHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-
Confidence 2 23488888999999998776333332 4457899999999999999999999 7899999985
Q ss_pred cCchHHhhhhhh
Q 045794 544 TNASAALAAGIF 555 (578)
Q Consensus 544 ~G~~gv~vgsa~ 555 (578)
+|++|+.+.+++
T Consensus 169 ~Ga~gvAvi~aI 180 (180)
T PF02581_consen 169 AGADGVAVISAI 180 (180)
T ss_dssp TT-SEEEESHHH
T ss_pred cCCCEEEEEeeC
Confidence 999999887764
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00012 Score=71.64 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=100.5
Q ss_pred HHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 343 LQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 343 ~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
++.|+++++.. +..+ +-+++-. | |.-..++++.++|||.|++-..+-. ... .++++. .+
T Consensus 40 ~~~i~~l~~~~~~~~i--~~d~k~~-d------~~~~~~~~~~~~Gad~i~vh~~~~~---~~~-------~~~i~~-~~ 99 (206)
T TIGR03128 40 IEAVKEMKEAFPDRKV--LADLKTM-D------AGEYEAEQAFAAGADIVTVLGVADD---ATI-------KGAVKA-AK 99 (206)
T ss_pred HHHHHHHHHHCCCCEE--EEEEeec-c------chHHHHHHHHHcCCCEEEEeccCCH---HHH-------HHHHHH-HH
Confidence 57788887763 3333 3344422 1 1112488999999999987543321 000 134444 56
Q ss_pred hCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC
Q 045794 422 VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID 501 (578)
Q Consensus 422 ~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~ 501 (578)
++|- .+++.+ -+ .-++.+.++.+.+.|++.+.++.-.
T Consensus 100 ~~g~-~~~~~~--~~----------------------------------------~~t~~~~~~~~~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 100 KHGK-EVQVDL--IN----------------------------------------VKDKVKRAKELKELGADYIGVHTGL 136 (206)
T ss_pred HcCC-EEEEEe--cC----------------------------------------CCChHHHHHHHHHcCCCEEEEcCCc
Confidence 6773 333322 11 1135677777888899988765432
Q ss_pred CCCCCCCCCHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 502 CDGQGKGFDMDLIKLISDAVS-IPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 502 ~dG~~~G~d~~li~~l~~~~~-ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.........++.++++++..+ .++.+.||| +.+.+.++++ .|++++++|+++...+. ..+..+.|+
T Consensus 137 ~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~-~Ga~~v~vGsai~~~~d-~~~~~~~l~ 203 (206)
T TIGR03128 137 DEQAKGQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIK-LGPDIVIVGGAITKAAD-PAEAARQIR 203 (206)
T ss_pred CcccCCCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHH-cCCCEEEEeehhcCCCC-HHHHHHHHH
Confidence 223333446778888877664 455569999 8899999985 99999999999986543 555555554
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.2e-05 Score=80.75 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=100.5
Q ss_pred HHHHHHHcCcceeecchhh----------------------hccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccc
Q 045794 379 VASEYFRSGADKISIGSDA----------------------VYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRR 436 (578)
Q Consensus 379 ~~~~~l~~Ga~~vv~gt~~----------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~ 436 (578)
.++++.++|.|.|=|...- +.++..|+ .+.++.+.+.+|++ +.+++++.-
T Consensus 159 aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~-------~eiv~aIR~~vG~d-~~v~vri~~ 230 (336)
T cd02932 159 AARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFL-------LEVVDAVRAVWPED-KPLFVRISA 230 (336)
T ss_pred HHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHH-------HHHHHHHHHHcCCC-ceEEEEEcc
Confidence 3778888899988774321 01112222 48899999999865 556666542
Q ss_pred cccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC-----CCCCCH
Q 045794 437 VYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ-----GKGFDM 511 (578)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~-----~~G~d~ 511 (578)
.. ..-.||. .-+..++++.+++.|++.|-++.-..... ..+.++
T Consensus 231 ~~----------------------------~~~~g~~---~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~ 279 (336)
T cd02932 231 TD----------------------------WVEGGWD---LEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQV 279 (336)
T ss_pred cc----------------------------cCCCCCC---HHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccH
Confidence 10 0001222 12357889999999999887653111111 134467
Q ss_pred HHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHH
Q 045794 512 DLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQS 564 (578)
Q Consensus 512 ~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~ 564 (578)
+.++++++.+++||+++|++.+++++.++++...||.|++|+++...+.....
T Consensus 280 ~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k 332 (336)
T cd02932 280 PFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLH 332 (336)
T ss_pred HHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHH
Confidence 89999999999999999999999999999975559999999999887754433
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.7e-05 Score=75.14 Aligned_cols=166 Identities=17% Similarity=0.129 Sum_probs=100.1
Q ss_pred HHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhC
Q 045794 344 QVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY 423 (578)
Q Consensus 344 ~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (578)
++++++++.+.+|+.+=+-.+. +++.-.+-++.+.++|++.+++=-..++..++ .+-+-+..+++
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~------~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~---------~~~~~~~~~~~ 128 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLED------YVDSLDNFLNMARDVGADGVLFPDLLIDYPDD---------LEKYVEIIKNK 128 (244)
T ss_pred HHHHHHhccCCCCEEEEEecch------hhhCHHHHHHHHHHcCCCEEEECCCCCCcHHH---------HHHHHHHHHHc
Confidence 5788888778889842111111 11111123788999999999985322210011 12234455778
Q ss_pred CCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC
Q 045794 424 GNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD 503 (578)
Q Consensus 424 g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d 503 (578)
|-+ .++.+.. -++.+.++.+.+. .+.+++..+..
T Consensus 129 Gl~-~~~~v~p-------------------------------------------~T~~e~l~~~~~~-~~~~l~msv~~- 162 (244)
T PRK13125 129 GLK-PVFFTSP-------------------------------------------KFPDLLIHRLSKL-SPLFIYYGLRP- 162 (244)
T ss_pred CCC-EEEEECC-------------------------------------------CCCHHHHHHHHHh-CCCEEEEEeCC-
Confidence 865 4444431 1234556666665 45566554321
Q ss_pred CCCCCC--C-HHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc--CCCCHHHHHHHHHh
Q 045794 504 GQGKGF--D-MDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR--KEVPIQSVKEHLYK 571 (578)
Q Consensus 504 G~~~G~--d-~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~--~~~~~~~~~~~l~~ 571 (578)
|+.+-+ + .+.++++++.. +.|+++.|||++.++++++.+ .|+|++++||++.+ ..-.++++.+++++
T Consensus 163 ~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~-~gaD~vvvGSai~~~~~~~~~~~~~~~~~~ 235 (244)
T PRK13125 163 ATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALS-AGADGVVVGTAFIEELEKNGVESALNLLKK 235 (244)
T ss_pred CCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHH-cCCCEEEECHHHHHHHHhcCHHHHHHHHHH
Confidence 222223 3 24677777766 579999999999999999985 89999999999964 12236666666654
|
|
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00026 Score=69.72 Aligned_cols=180 Identities=8% Similarity=0.042 Sum_probs=115.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+..+.++...+.|++.|++=+-+.... .......-+.+++++.++++.+- +. ++-..+.|
T Consensus 20 ~~~~~l~~~l~~G~~~vqLR~k~~~~~---~~~~la~~l~~~~~~~~~~liIn----d~-------------~~lA~~~~ 79 (211)
T PRK03512 20 DSVQWIERLLDAGVRTLQLRIKDRRDE---EVEADVVAAIALGRRYQARLFIN----DY-------------WRLAIKHQ 79 (211)
T ss_pred CCHHHHHHHHhCCCCEEEEcCCCCCHH---HHHHHHHHHHHHHHHhCCeEEEe----CH-------------HHHHHHcC
Confidence 445678888889999888864443110 00111233445556678898763 32 55567789
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
++.|=+|..... ..++.+..|..+ ++++.+.
T Consensus 80 adGVHlg~~d~~----------------~~~~r~~~~~~~-~iG~S~H-------------------------------- 110 (211)
T PRK03512 80 AYGVHLGQEDLE----------------TADLNAIRAAGL-RLGVSTH-------------------------------- 110 (211)
T ss_pred CCEEEcChHhCC----------------HHHHHHhcCCCC-EEEEeCC--------------------------------
Confidence 999988854332 123333345332 3444321
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC----CCCCCCCCCHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHH
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCID----CDGQGKGFDMDLIKLISDA-VSIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~----~dG~~~G~d~~li~~l~~~-~~ipVIasGGi~s~eDi~~l~~ 542 (578)
+ .+-+.++.+.|++.+.+-.+- +.+......++.++++.+. .++||+|-||| +.+++.++.+
T Consensus 111 -----------~-~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI-~~~ni~~l~~ 177 (211)
T PRK03512 111 -----------D-DMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGI-SLERAPAVLA 177 (211)
T ss_pred -----------C-HHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCC-CHHHHHHHHH
Confidence 1 234566778899999966553 3333344578888888766 48999999999 5899999985
Q ss_pred hcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 543 KTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.|++|+.+-+++...+-..+.++++++
T Consensus 178 -~Ga~GiAvisai~~~~d~~~~~~~l~~ 204 (211)
T PRK03512 178 -TGVGSIAVVSAITQAADWRAATAQLLE 204 (211)
T ss_pred -cCCCEEEEhhHhhCCCCHHHHHHHHHH
Confidence 999999999999866654444444443
|
|
| >cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.8e-05 Score=65.75 Aligned_cols=72 Identities=28% Similarity=0.439 Sum_probs=55.5
Q ss_pred HHHHHHHHHHCCCeEEEeCCccC-------CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHH
Q 045794 60 VRSVRNAIRHLGFGIKDVQTPED-------ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQL 132 (578)
Q Consensus 60 ~~~i~~~L~~~Gv~v~~v~~~~d-------l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~Ql 132 (578)
...+.+.++..++++.+++.... ..++|++|+|||........ ....+.+.+++..+.++|++|+|.|+|+
T Consensus 14 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~--~~~~~~~~i~~~~~~~~~i~~~c~g~~~ 91 (115)
T cd01653 14 LASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA--RDEALLALLREAAAAGKPILGICLGAQL 91 (115)
T ss_pred hHHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhc--cCHHHHHHHHHHHHcCCEEEEECchhHh
Confidence 35778899999999998876432 57899999999865433321 1124567888888889999999999999
Q ss_pred H
Q 045794 133 L 133 (578)
Q Consensus 133 L 133 (578)
+
T Consensus 92 l 92 (115)
T cd01653 92 L 92 (115)
T ss_pred H
Confidence 9
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.7e-05 Score=75.75 Aligned_cols=186 Identities=17% Similarity=0.212 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEec---ccCCCCCC-------------CCchhHHHHHHHhhhccccEEEeCCccccccCCC
Q 045794 308 KPVELARQYYKEGADEISFLNI---TGFRDFPL-------------GDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANG 371 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl---~~~~~~~~-------------~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~ 371 (578)
.-.++++.+.+.|+|-|=+ -+ |-.-||+. .-..-++++++++++..+|+.+=+-.+.+
T Consensus 30 ~~~~~~~~l~~~Gad~iEl-GiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i----- 103 (263)
T CHL00200 30 ITKKALKILDKKGADIIEL-GIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPV----- 103 (263)
T ss_pred HHHHHHHHHHHCCCCEEEE-CCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHH-----
Confidence 3457788888888885443 11 11111110 11234677888887778886543333221
Q ss_pred CccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceee
Q 045794 372 RHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVR 451 (578)
Q Consensus 372 ~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~ 451 (578)
+.|.--+-++++.++|+|.+++=-..+++. +-+.+.++++|-+- +..+-
T Consensus 104 ~~~G~e~F~~~~~~aGvdgviipDLP~ee~------------~~~~~~~~~~gi~~-I~lv~------------------ 152 (263)
T CHL00200 104 LHYGINKFIKKISQAGVKGLIIPDLPYEES------------DYLISVCNLYNIEL-ILLIA------------------ 152 (263)
T ss_pred HHhCHHHHHHHHHHcCCeEEEecCCCHHHH------------HHHHHHHHHcCCCE-EEEEC------------------
Confidence 111111237888899999999965555432 23445667788543 33221
Q ss_pred eccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc-CCCCCCCCC--C-HHHHHHHHhhCCCcEEE
Q 045794 452 VTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI-DCDGQGKGF--D-MDLIKLISDAVSIPVIA 527 (578)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi-~~dG~~~G~--d-~~li~~l~~~~~ipVIa 527 (578)
.-+..+.++.+.+..-+.|.+.+. ...|...-. + .++++++++.++.|+.+
T Consensus 153 -------------------------PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v 207 (263)
T CHL00200 153 -------------------------PTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIIL 207 (263)
T ss_pred -------------------------CCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEE
Confidence 113356666666664445555442 222222121 2 25778888888999999
Q ss_pred ecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 528 SSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 528 sGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
++||+++++++++.+ .|+|||+|||++-
T Consensus 208 GFGI~~~e~~~~~~~-~GADGvVVGSalv 235 (263)
T CHL00200 208 GFGISTSEQIKQIKG-WNINGIVIGSACV 235 (263)
T ss_pred ECCcCCHHHHHHHHh-cCCCEEEECHHHH
Confidence 999999999999985 8999999999993
|
|
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.8e-05 Score=79.67 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+..++++.+++.|++.|-++.-.......+++++..+++++.+++|||++||+. ++++.++++..+||.|++|+++...
T Consensus 242 e~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~lad 320 (338)
T cd02933 242 TFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIAN 320 (338)
T ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhC
Confidence 346899999999999888744222223367899999999999999999999997 9999999986679999999999988
Q ss_pred CCCHHHHH
Q 045794 559 EVPIQSVK 566 (578)
Q Consensus 559 ~~~~~~~~ 566 (578)
+.-+..++
T Consensus 321 P~~~~k~~ 328 (338)
T cd02933 321 PDLVERLK 328 (338)
T ss_pred cCHHHHHh
Confidence 87666554
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00033 Score=68.47 Aligned_cols=181 Identities=20% Similarity=0.181 Sum_probs=115.4
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-----ccEEEeCCccccccCCCCccChHHHHHH-HH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-----VPLTVGGGIRDFTDANGRHYSSLEVASE-YF 384 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-----~pi~~gGGir~~~d~~~~~~~~~~~~~~-~l 384 (578)
+-|+...+.|++.+-++.-+.. .|....+..+++.+.+. +++.+ -++.+.+.+ +.
T Consensus 10 ed~~~a~~~Gvd~ig~i~~~~s-----~R~v~~~~a~~l~~~~~~~~~~V~v~v--------------n~~~~~i~~ia~ 70 (203)
T cd00405 10 EDALAAAEAGADAIGFIFAPKS-----PRYVSPEQAREIVAALPPFVKRVGVFV--------------NEDLEEILEIAE 70 (203)
T ss_pred HHHHHHHHcCCCEEEEecCCCC-----CCCCCHHHHHHHHHhCCCCCcEEEEEe--------------CCCHHHHHHHHH
Confidence 5566667899999999866542 12334566666666442 33322 222333444 44
Q ss_pred HcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
+.|+|.|=++..- + ++.++++.+.+|. .++.++.+...
T Consensus 71 ~~~~d~Vqlhg~e---~-----------~~~~~~l~~~~~~-~~i~~i~~~~~--------------------------- 108 (203)
T cd00405 71 ELGLDVVQLHGDE---S-----------PEYCAQLRARLGL-PVIKAIRVKDE--------------------------- 108 (203)
T ss_pred hcCCCEEEECCCC---C-----------HHHHHHHHhhcCC-cEEEEEecCCh---------------------------
Confidence 6789988887421 1 2456777776764 35543432210
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC---CCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD---GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d---G~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~ 541 (578)
...+. ......+++.+++-.-+.. |+..-+||++++++. ..+|++++||| +++.+.+++
T Consensus 109 --------------~~~~~-~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i 170 (203)
T cd00405 109 --------------EDLEK-AAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAI 170 (203)
T ss_pred --------------hhHHH-hhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCC-ChHHHHHHH
Confidence 01122 2334568898876433332 244556999998876 67899999999 899999999
Q ss_pred HhcC-chHHhhhhhhcc--CCCCHHHHHHHHHh
Q 045794 542 RKTN-ASAALAAGIFHR--KEVPIQSVKEHLYK 571 (578)
Q Consensus 542 ~~~G-~~gv~vgsa~~~--~~~~~~~~~~~l~~ 571 (578)
+ .+ ++|+.+.|++.. |..++..++++++.
T Consensus 171 ~-~~~~~gvdv~S~ie~~pg~kd~~ki~~~~~~ 202 (203)
T cd00405 171 R-LVRPYGVDVSSGVETSPGIKDPEKIRAFIEA 202 (203)
T ss_pred H-hcCCCEEEcCCcccCCCCCcCHHHHHHHHHh
Confidence 6 66 999999999864 66778888887753
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.6e-05 Score=73.88 Aligned_cols=99 Identities=19% Similarity=0.260 Sum_probs=83.2
Q ss_pred eeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHH
Q 045794 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLR 347 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~ 347 (578)
.|++.++|+| +|++. +- ...++++..+.++..--..++++|+++- |+ .++.|.+++.
T Consensus 118 ~r~vvslD~k---~~~Ll--~~---------------~~ed~le~Vk~l~~~~~~~lIvLDi~aV--Gt-~~G~~~E~l~ 174 (229)
T COG1411 118 GRIVVSLDVK---GGELL--GP---------------WLEDFLETVKDLNYRRDPGLIVLDIGAV--GT-KSGPDYELLT 174 (229)
T ss_pred cceEEEEecC---CCeec--CC---------------CchhHHHHHHHHhccCCCCeEEEEcccc--cc-ccCCCHHHHH
Confidence 5899999999 77632 11 1579999999988877777999999975 22 3578899999
Q ss_pred HHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 348 LTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 348 ~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
.+...+.-|+.+||||+-+|| ++.+..+|++.+.++|+..+-
T Consensus 175 ~~~~~s~~pVllGGGV~g~Ed-----------lel~~~~Gv~gvLvaTalh~G 216 (229)
T COG1411 175 KVLELSEHPVLLGGGVGGMED-----------LELLLGMGVSGVLVATALHEG 216 (229)
T ss_pred HHHHhccCceeecCCcCcHHH-----------HHHHhcCCCceeeehhhhhcC
Confidence 999988899999999999987 888888999999999998873
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00031 Score=68.48 Aligned_cols=172 Identities=14% Similarity=0.192 Sum_probs=117.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+-+++++.+.+.|++-+= +.++. ..-++.|++++++.. .+.+| |.|.+.++ ++++.+
T Consensus 20 e~a~~~~~al~~~Gi~~iE-it~~t--------~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~-----------a~~a~~ 78 (204)
T TIGR01182 20 DDALPLAKALIEGGLRVLE-VTLRT--------PVALDAIRLLRKEVP-DALIGAGTVLNPEQ-----------LRQAVD 78 (204)
T ss_pred HHHHHHHHHHHHcCCCEEE-EeCCC--------ccHHHHHHHHHHHCC-CCEEEEEeCCCHHH-----------HHHHHH
Confidence 4677899999999998444 44433 223788999988765 47777 77888755 999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.++--. + ++++++. ++++|- ..
T Consensus 79 aGA~FivsP~--~-------------~~~v~~~-~~~~~i----~~---------------------------------- 104 (204)
T TIGR01182 79 AGAQFIVSPG--L-------------TPELAKH-AQDHGI----PI---------------------------------- 104 (204)
T ss_pred cCCCEEECCC--C-------------CHHHHHH-HHHcCC----cE----------------------------------
Confidence 9999885432 1 2345544 566651 11
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
+.| -.++-| +..+.++|++.+=+...+. +.|+ ..++.++.-+ ++|++..||| +.+.+.+.++ .
T Consensus 105 ---iPG-----~~TptE-i~~A~~~Ga~~vKlFPA~~---~GG~--~yikal~~plp~i~~~ptGGV-~~~N~~~~l~-a 168 (204)
T TIGR01182 105 ---IPG-----VATPSE-IMLALELGITALKLFPAEV---SGGV--KMLKALAGPFPQVRFCPTGGI-NLANVRDYLA-A 168 (204)
T ss_pred ---ECC-----CCCHHH-HHHHHHCCCCEEEECCchh---cCCH--HHHHHHhccCCCCcEEecCCC-CHHHHHHHHh-C
Confidence 111 123444 4556689999999888543 2234 4667776655 6999999999 5699999995 9
Q ss_pred CchHHhhhhhhccCCC----CHHHHHHHH
Q 045794 545 NASAALAAGIFHRKEV----PIQSVKEHL 569 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~----~~~~~~~~l 569 (578)
|+.++.+||.+..... +++++++..
T Consensus 169 Ga~~vg~Gs~L~~~~~~~~~~~~~i~~~a 197 (204)
T TIGR01182 169 PNVACGGGSWLVPKDLIAAGDWDEITRLA 197 (204)
T ss_pred CCEEEEEChhhcCchhhccccHHHHHHHH
Confidence 9999999999976442 345555544
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00017 Score=72.72 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=110.7
Q ss_pred HHHHHHHHHHcCCCeEEEEec---ccCCCCCC-------------CCchhHHHHHHHhhhccccEEEeCCccccccCCCC
Q 045794 309 PVELARQYYKEGADEISFLNI---TGFRDFPL-------------GDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGR 372 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl---~~~~~~~~-------------~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~ 372 (578)
-+++++.+.+.|+|-|=+ -+ |-.-||+. .-..-++++++++++..+|+.+=+-.+.+ +
T Consensus 18 ~~~~~~~l~~~Gad~iEl-GiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i-----~ 91 (250)
T PLN02591 18 TAEALRLLDACGADVIEL-GVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPI-----L 91 (250)
T ss_pred HHHHHHHHHHCCCCEEEE-CCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHH-----H
Confidence 356777888888884432 11 11111110 11234677888887778886543333321 1
Q ss_pred ccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeee
Q 045794 373 HYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRV 452 (578)
Q Consensus 373 ~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~ 452 (578)
.|.--+-++++-++|++-+++--..++.. +.+.+.++++|=+ .+..+-
T Consensus 92 ~~G~~~F~~~~~~aGv~GviipDLP~ee~------------~~~~~~~~~~gl~-~I~lv~------------------- 139 (250)
T PLN02591 92 KRGIDKFMATIKEAGVHGLVVPDLPLEET------------EALRAEAAKNGIE-LVLLTT------------------- 139 (250)
T ss_pred HhHHHHHHHHHHHcCCCEEEeCCCCHHHH------------HHHHHHHHHcCCe-EEEEeC-------------------
Confidence 11111237788899999999965444422 3345556778754 333231
Q ss_pred ccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEec-cCCCCCCCC--CCH-HHHHHHHhhCCCcEEEe
Q 045794 453 TDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNC-IDCDGQGKG--FDM-DLIKLISDAVSIPVIAS 528 (578)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~td-i~~dG~~~G--~d~-~li~~l~~~~~ipVIas 528 (578)
.-+..+.++++.+..-+.|-+.+ ....|...+ .++ +.++++++.+++||+++
T Consensus 140 ------------------------Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vG 195 (250)
T PLN02591 140 ------------------------PTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVG 195 (250)
T ss_pred ------------------------CCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEe
Confidence 11223455555555433333323 223344444 344 45888888889999999
Q ss_pred cCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 529 SGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 529 GGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
-||++.+|++++.+ .|+|||+|||++-
T Consensus 196 FGI~~~e~v~~~~~-~GADGvIVGSalV 222 (250)
T PLN02591 196 FGISKPEHAKQIAG-WGADGVIVGSAMV 222 (250)
T ss_pred CCCCCHHHHHHHHh-cCCCEEEECHHHH
Confidence 99999999999985 8999999999994
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0002 Score=70.62 Aligned_cols=192 Identities=14% Similarity=0.189 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+.+.++...+.|.|.|.+===++. ......++++++++. .+|+.+= |....+ ..
T Consensus 15 ~~~~~~~~~~~~gtdai~vGGS~~v-----t~~~~~~~v~~ik~~-~lPvilfp~~~~~i------------------~~ 70 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIGGSQGV-----TYEKTDTLIEALRRY-GLPIILFPSNPTNV------------------SR 70 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEcCCCcc-----cHHHHHHHHHHHhcc-CCCEEEeCCCcccc------------------Cc
Confidence 5668999999999998876322221 113345577888764 4999753 444433 24
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCC--CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN--QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
+||.+.+=|..=.++++|+- ..-.+++..|+. ..++. .+|+. . ++++
T Consensus 71 ~aDa~l~~svlNs~~~~~ii-------g~~~~~~~~~~~~~~e~ip-----~gYiv------------~--~~~~----- 119 (223)
T TIGR01768 71 DADALFFPSVLNSDDPYWII-------GAQIEAAPKFKKIGEEIIP-----EGYII------------V--NPGG----- 119 (223)
T ss_pred CCCEEEEEEeecCCCchHHH-------hHHHHHHHHHhhhcceecc-----eEEEE------------E--CCCc-----
Confidence 68877775544444455531 111222333321 11111 11110 0 0000
Q ss_pred EEEEEcccccCCCCCHHHH---HHHHHH-cCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHH
Q 045794 465 YQCTVNGGREGRPIGAYEL---AKAVED-LGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~---~~~~~~-~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~ 539 (578)
.+.--+..+..+.+..++ +....+ +|. .++|...+ .|.....+.+.++++++.+ ++|++++|||++.+++++
T Consensus 120 -~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~-~~vYlE~g-s~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~ 196 (223)
T TIGR01768 120 -AAARVTKAKPIPYDKEDLAAYAAMAEEMLGM-PIIYLEAG-SGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKARE 196 (223)
T ss_pred -ceeecccccccCCCcHHHHHHHHHHHHHcCC-cEEEEEec-CCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHH
Confidence 111011111111232332 222333 344 46666543 2334456899999999988 899999999999999999
Q ss_pred HHHhcCchHHhhhhhhccC
Q 045794 540 VFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~~ 558 (578)
+++ .|||+|++||+++..
T Consensus 197 l~~-aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 197 MAE-AGADTIVTGNVIEED 214 (223)
T ss_pred HHH-cCCCEEEECcHHhhC
Confidence 995 899999999999976
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.7e-05 Score=62.06 Aligned_cols=71 Identities=30% Similarity=0.436 Sum_probs=53.1
Q ss_pred HHHHHHHHHCCCeEEEeCCcc-------CCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHH
Q 045794 61 RSVRNAIRHLGFGIKDVQTPE-------DILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLL 133 (578)
Q Consensus 61 ~~i~~~L~~~Gv~v~~v~~~~-------dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlL 133 (578)
..+.+.+++.++++.+++... ...++|++|+|||+....... ......+++.+..+.++|++|+|.|+|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA--WDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred ecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhc--cCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 467788999998888876532 267899999999876544432 11245677888888899999999999874
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin |
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.2e-05 Score=74.81 Aligned_cols=200 Identities=18% Similarity=0.189 Sum_probs=123.2
Q ss_pred HHHHHHHHcCCCeEEEEecc----cCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 311 ELARQYYKEGADEISFLNIT----GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~----~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
|.|+..++.||..++..+-- +.+ +...+.++..+|++|.+.+.+|+..---|..+-+ ++-|-+.
T Consensus 32 eQA~iAE~aGACaVmalervPadiR~~-GgV~RMsDP~mIKei~~aVsiPVMAk~RiGHFVE-----------AQIlE~l 99 (296)
T KOG1606|consen 32 EQARIAEEAGACAVMALERVPADIRAQ-GGVARMSDPRMIKEIKNAVSIPVMAKVRIGHFVE-----------AQILEAL 99 (296)
T ss_pred HHHHHHHhcCcceEeeeccCCHhHHhc-CCeeecCCHHHHHHHHHhccchhhhhhhhhhhhH-----------HHHHHHh
Confidence 78999999999999887621 122 3356788999999999999999999888888854 6777778
Q ss_pred Ccceeecch----hhhccc-------hhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccC
Q 045794 387 GADKISIGS----DAVYAA-------EDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDL 455 (578)
Q Consensus 387 Ga~~vv~gt----~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~ 455 (578)
|+|.|--.- +-..+. -.|+| |.+..-|.|+.|.+ | .
T Consensus 100 ~vDYiDESEvlt~AD~~hhI~KhnFkvPFvC-G~rdlGEALRRI~E--G--A---------------------------- 146 (296)
T KOG1606|consen 100 GVDYIDESEVLTPADWDHHIEKHNFKVPFVC-GCRDLGEALRRIRE--G--A---------------------------- 146 (296)
T ss_pred ccCccchhhhcccccccchhhhhcCcCceee-ccccHHHHHHHHhh--c--h----------------------------
Confidence 898764321 111100 00222 11111122222221 1 0
Q ss_pred CCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC-----CCCCHHHHHHHHhhCCCcE--EEe
Q 045794 456 GPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG-----KGFDMDLIKLISDAVSIPV--IAS 528 (578)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~-----~G~d~~li~~l~~~~~ipV--Ias 528 (578)
-.+.++|-. .++ ++.|..+...+..-.-=.+...+.|.-. --..++|+++..+.-.+|| +++
T Consensus 147 ---------AMIRtkGea-gTG-~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~GrlPVV~FAa 215 (296)
T KOG1606|consen 147 ---------AMIRTKGEA-GTG-DVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQLGRLPVVNFAA 215 (296)
T ss_pred ---------hhheecccc-CCC-cHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHcCCCceEEecc
Confidence 133444422 122 4455555544432111111222222111 1134678888888778898 799
Q ss_pred cCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHH
Q 045794 529 SGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKE 567 (578)
Q Consensus 529 GGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~ 567 (578)
||+.++.|...+.+ +||+||.+||.++.+.-+.+.++.
T Consensus 216 GGvaTPADAALmMQ-LGCdGVFVGSgiFks~dP~k~a~a 253 (296)
T KOG1606|consen 216 GGVATPADAALMMQ-LGCDGVFVGSGIFKSGDPVKRARA 253 (296)
T ss_pred cCcCChhHHHHHHH-cCCCeEEeccccccCCCHHHHHHH
Confidence 99999999999985 999999999999888777766554
|
|
| >cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP) | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.2e-05 Score=69.18 Aligned_cols=72 Identities=24% Similarity=0.423 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHCCCeEEEeCCcc----CC-CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHH
Q 045794 59 NVRSVRNAIRHLGFGIKDVQTPE----DI-LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLL 133 (578)
Q Consensus 59 ~~~~i~~~L~~~Gv~v~~v~~~~----dl-~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlL 133 (578)
...++.+.|+..- .+..+...+ .+ .++|.||+|| |.+.+.+..+...+ .+.|++++++++|+||||+|.-+-
T Consensus 14 ~~~~~~~~L~~~~-~v~~~~~~~I~~~~~~~~ad~lVlPG-Ga~~~~~~~L~~~g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 14 SLKHLAELLRLYL-AVSTVTADELAVGPWESKTALLVVPG-GADLPYCRALNGKG-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred HHHHHHHHHhhcc-ceeeecHHHHhcCchhhCCCEEEECC-CChHHHHHHHHhhC-cHHHHHHHHCCCcEEEEecCccce
Confidence 3344555555432 444444321 12 4899999999 77777888887667 889999999999999999998553
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved. |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00096 Score=64.88 Aligned_cols=175 Identities=22% Similarity=0.223 Sum_probs=105.1
Q ss_pred HHHHHHHHcCCCeEEEEe-cccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChH------HHHHHH
Q 045794 311 ELARQYYKEGADEISFLN-ITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSL------EVASEY 383 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~D-l~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~------~~~~~~ 383 (578)
+-|..-.+.||++|-+.. |.- +| -.+...+++.+.+...+||.+ =||--. -.|.|+.. ++++.+
T Consensus 11 ~~a~~A~~~GAdRiELc~~l~~--GG---lTPS~g~i~~~~~~~~ipv~v--MIRpr~--gdF~Ys~~E~~~M~~dI~~~ 81 (201)
T PF03932_consen 11 EDALAAEAGGADRIELCSNLEV--GG---LTPSLGLIRQAREAVDIPVHV--MIRPRG--GDFVYSDEEIEIMKEDIRML 81 (201)
T ss_dssp HHHHHHHHTT-SEEEEEBTGGG--T----B---HHHHHHHHHHTTSEEEE--E--SSS--S-S---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCCccC--CC---cCcCHHHHHHHHhhcCCceEE--EECCCC--CCccCCHHHHHHHHHHHHHH
Confidence 445555789999999975 321 22 267899999999988999887 455432 13777764 468888
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.++|++.+|+|...-.. ..+.+.++++.+.-++-.+++ =|.+|.
T Consensus 82 ~~~GadG~VfG~L~~dg---------~iD~~~~~~Li~~a~~~~~tF-------------------HRAfD~-------- 125 (201)
T PF03932_consen 82 RELGADGFVFGALTEDG---------EIDEEALEELIEAAGGMPVTF-------------------HRAFDE-------- 125 (201)
T ss_dssp HHTT-SEEEE--BETTS---------SB-HHHHHHHHHHHTTSEEEE--------------------GGGGG--------
T ss_pred HHcCCCeeEEEeECCCC---------CcCHHHHHHHHHhcCCCeEEE-------------------eCcHHH--------
Confidence 89999999999644332 345677777776544333433 012332
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDA--VSIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~--~~ipVIasGGi~s~eDi~~l~ 541 (578)
. .++.+.++.+.++|+++|+-.. ....... +++.++++.+. -.+.|+++|||+. +.+..+.
T Consensus 126 ------------~-~d~~~al~~L~~lG~~rVLTSG-g~~~a~~--g~~~L~~lv~~a~~~i~Im~GgGv~~-~nv~~l~ 188 (201)
T PF03932_consen 126 ------------V-PDPEEALEQLIELGFDRVLTSG-GAPTALE--GIENLKELVEQAKGRIEIMPGGGVRA-ENVPELV 188 (201)
T ss_dssp ------------S-STHHHHHHHHHHHT-SEEEEST-TSSSTTT--CHHHHHHHHHHHTTSSEEEEESS--T-TTHHHHH
T ss_pred ------------h-CCHHHHHHHHHhcCCCEEECCC-CCCCHHH--HHHHHHHHHHHcCCCcEEEecCCCCH-HHHHHHH
Confidence 1 2578899999999999988443 2222333 46777777554 3688999999954 7899988
Q ss_pred HhcCch
Q 045794 542 RKTNAS 547 (578)
Q Consensus 542 ~~~G~~ 547 (578)
+++|+.
T Consensus 189 ~~tg~~ 194 (201)
T PF03932_consen 189 EETGVR 194 (201)
T ss_dssp HHHT-S
T ss_pred HhhCCe
Confidence 767765
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00024 Score=76.21 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCC---------CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHh
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDG---------QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAAL 550 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG---------~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~ 550 (578)
..++++.+++.|++.|-++.-+.+. ...|..++..+.+++.+++|||++||+.+++++.++++..+||.|+
T Consensus 254 ~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~ 333 (382)
T cd02931 254 GLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMIS 333 (382)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeee
Confidence 4578999999999999887543221 1234456788899999999999999999999999999867799999
Q ss_pred hhhhhccCCCCHHHHH
Q 045794 551 AAGIFHRKEVPIQSVK 566 (578)
Q Consensus 551 vgsa~~~~~~~~~~~~ 566 (578)
+|+++...+.-+..++
T Consensus 334 ~gR~~ladP~l~~k~~ 349 (382)
T cd02931 334 LGRPLLADPDVVNKIR 349 (382)
T ss_pred echHhHhCccHHHHHH
Confidence 9999998887666554
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00032 Score=74.55 Aligned_cols=88 Identities=23% Similarity=0.114 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHcCCcEEEEeccC---C---CCCC--CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHh
Q 045794 479 GAYELAKAVEDLGAGEILLNCID---C---DGQG--KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAAL 550 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~---~---dG~~--~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~ 550 (578)
+..++++.++++|++.|-++.-. + .... .+...+..+++++.+++||+++|++.+++++.++++..++|.|+
T Consensus 225 e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~ 304 (353)
T cd02930 225 EVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVS 304 (353)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhH
Confidence 35789999999999988874211 1 1111 22346778899999999999999999999999999866799999
Q ss_pred hhhhhccCCCCHHHHH
Q 045794 551 AAGIFHRKEVPIQSVK 566 (578)
Q Consensus 551 vgsa~~~~~~~~~~~~ 566 (578)
+|+++...+.-+..++
T Consensus 305 ~gR~~l~dP~~~~k~~ 320 (353)
T cd02930 305 MARPFLADPDFVAKAA 320 (353)
T ss_pred hhHHHHHCccHHHHHH
Confidence 9999998887665554
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0013 Score=64.42 Aligned_cols=206 Identities=19% Similarity=0.260 Sum_probs=132.2
Q ss_pred HHHHHHHHHHcCCCeEEEEecccC---CC-CCCCCchhHHHHHHHhhhccccEEEeCCccccc-cCCCCccChHHHHHHH
Q 045794 309 PVELARQYYKEGADEISFLNITGF---RD-FPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFT-DANGRHYSSLEVASEY 383 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~---~~-~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~-d~~~~~~~~~~~~~~~ 383 (578)
.+.=|+.|++-|+|.|++=+--.+ ++ ++..-..+..+++++.+++.+|+ ||+=+. | ....+.-.
T Consensus 36 A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPv----GvNVLrNd-------~vaA~~IA 104 (263)
T COG0434 36 AVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPV----GVNVLRND-------AVAALAIA 104 (263)
T ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccc----eeeeeccc-------cHHHHHHH
Confidence 344588899999999998654211 11 11112345566788888889998 776543 2 12223334
Q ss_pred HHcCcceeecch---hhhccchhhhhccccCCchHHHHHHHhCCC-CeEEEEEeccccccCCCCccccceeeeccCCCCC
Q 045794 384 FRSGADKISIGS---DAVYAAEDYLKTGVKTGKSSLEQISRVYGN-QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNG 459 (578)
Q Consensus 384 l~~Ga~~vv~gt---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (578)
...||+.|=++. +.+. +..++.. +-..+-+...+.|+ -+|.+-+++|...-
T Consensus 105 ~a~gA~FIRVN~~tg~~~t-dqGiieg----~A~e~~r~r~~L~~~v~vlADv~VKHa~~-------------------- 159 (263)
T COG0434 105 YAVGADFIRVNVLTGAYAT-DQGIIEG----NAAELARYRARLGSRVKVLADVHVKHAVH-------------------- 159 (263)
T ss_pred HhcCCCEEEEEeeeceEec-ccceecc----hHHHHHHHHHhccCCcEEEeecchhcccc--------------------
Confidence 456888665432 1122 2233321 11122333455662 34555555555321
Q ss_pred CCcceEEEEEcccccCCCCCHHHHHHH-HHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q 045794 460 EEYAWYQCTVNGGREGRPIGAYELAKA-VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFS 538 (578)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~e~~~~-~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~ 538 (578)
....++.+.++. ++..+++.+|+|.- .|.+.+|.+.++..++.++.||+++-|+ +++-+.
T Consensus 160 ---------------l~~~~~~~~v~dtver~~aDaVI~tG~---~TG~~~d~~el~~a~~~~~~pvlvGSGv-~~eN~~ 220 (263)
T COG0434 160 ---------------LGNRSLEEAVKDTVERGLADAVIVTGS---RTGSPPDLEELKLAKEAVDTPVLVGSGV-NPENIE 220 (263)
T ss_pred ---------------cCCcCHHHHHHHHHHccCCCEEEEecc---cCCCCCCHHHHHHHHhccCCCEEEecCC-CHHHHH
Confidence 113367888888 56666999999874 3566789999999999999999999999 788899
Q ss_pred HHHHhcCchHHhhhhhhccC-----CCCHHHHHHHHHh
Q 045794 539 DVFRKTNASAALAAGIFHRK-----EVPIQSVKEHLYK 571 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~-----~~~~~~~~~~l~~ 571 (578)
.+++ . +||+++||.+-.+ +++...++++.+.
T Consensus 221 ~~l~-~-adG~IvgT~lK~~G~~~n~VD~~Rv~~~v~~ 256 (263)
T COG0434 221 ELLK-I-ADGVIVGTSLKKGGVTWNPVDLERVRRFVEA 256 (263)
T ss_pred HHHH-H-cCceEEEEEEccCCEecCccCHHHHHHHHHH
Confidence 9986 4 9999999988543 6778877776653
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0015 Score=64.86 Aligned_cols=192 Identities=14% Similarity=0.162 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhh-ccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSEN-VFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
+..+-++.+.+.|++++| +|+ |+..- .+-.--.++++.+++. +.+|+.+===+.+.+ .-++.+.+
T Consensus 17 ~l~~~i~~l~~~g~d~lH-iDimDG~FV--PN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~----------~~i~~~~~ 83 (223)
T PRK08745 17 RLGEEVDNVLKAGADWVH-FDVMDNHYV--PNLTIGPMVCQALRKHGITAPIDVHLMVEPVD----------RIVPDFAD 83 (223)
T ss_pred HHHHHHHHHHHcCCCEEE-EecccCccC--CCcccCHHHHHHHHhhCCCCCEEEEeccCCHH----------HHHHHHHH
Confidence 333556667778999999 565 44211 1112225678888876 466755433344554 35888899
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.|.+=.++-.+.. ..++.+ ++.|- +.-++|...
T Consensus 84 ~gad~I~~H~Ea~~~~~-----------~~l~~I-r~~g~-k~GlalnP~------------------------------ 120 (223)
T PRK08745 84 AGATTISFHPEASRHVH-----------RTIQLI-KSHGC-QAGLVLNPA------------------------------ 120 (223)
T ss_pred hCCCEEEEcccCcccHH-----------HHHHHH-HHCCC-ceeEEeCCC------------------------------
Confidence 99999999877654321 445555 44563 445555311
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHH---HHHHHhh-----CCCcEEEecCCCCHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDL---IKLISDA-----VSIPVIASSGAGAVEHF 537 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~l---i~~l~~~-----~~ipVIasGGi~s~eDi 537 (578)
++++.++.+.+. ++.|+++.+.-....+.+..+. ++++++. .++.+-+-||| +.+.+
T Consensus 121 -------------T~~~~i~~~l~~-vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI-~~eti 185 (223)
T PRK08745 121 -------------TPVDILDWVLPE-LDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGV-KADNI 185 (223)
T ss_pred -------------CCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHH
Confidence 335566666664 8999999998876777775443 3333332 14668999999 57899
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
.++.+ .|++.+++||++... -++.+..+.+++.
T Consensus 186 ~~l~~-aGaDi~V~GSaiF~~-~d~~~~~~~lr~~ 218 (223)
T PRK08745 186 GAIAA-AGADTFVAGSAIFNA-PDYAQVIAQMRAA 218 (223)
T ss_pred HHHHH-cCCCEEEEChhhhCC-CCHHHHHHHHHHH
Confidence 99885 999999999998753 3566666666543
|
|
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00011 Score=77.27 Aligned_cols=91 Identities=22% Similarity=0.287 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCC-CCC--HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGK-GFD--MDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~-G~d--~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+.++++.+.|+|.|++.....-|+.. ... +.|+.++++.+++|||++|||.+.+++..++. +||+||.+|+.|.-
T Consensus 146 ~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~-lGA~gV~~GTrFl~ 224 (330)
T PF03060_consen 146 VREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAALA-LGADGVQMGTRFLA 224 (330)
T ss_dssp HHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHH-CT-SEEEESHHHHT
T ss_pred HHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHH-cCCCEeecCCeEEe
Confidence 667889999999999999988877665 333 68889999999999999999999999999996 99999999998864
Q ss_pred CCCC--HHHHHHHHHhC
Q 045794 558 KEVP--IQSVKEHLYKE 572 (578)
Q Consensus 558 ~~~~--~~~~~~~l~~~ 572 (578)
..-. -+..|+.+-+.
T Consensus 225 t~Es~~~~~~K~~l~~a 241 (330)
T PF03060_consen 225 TEESGASDAYKQALVDA 241 (330)
T ss_dssp STTS-S-HHHHHHHHHG
T ss_pred cccccChHHHHHHHHhC
Confidence 3322 35666666544
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00046 Score=73.71 Aligned_cols=151 Identities=19% Similarity=0.157 Sum_probs=103.6
Q ss_pred HHHHHHHhhh-ccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 343 LQVLRLTSEN-VFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 343 ~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
.++|+++++. .+.++.+.==+.+... .. ++.+.++||+.+.+-..+-.. . +...-+..+
T Consensus 214 ~~iVk~Lr~~~~~~~I~~DLK~~Di~~--------~v-v~~~a~aGAD~vTVH~ea~~~---t--------i~~ai~~ak 273 (391)
T PRK13307 214 LEVISKIREVRPDAFIVADLKTLDTGN--------LE-ARMAADATADAVVISGLAPIS---T--------IEKAIHEAQ 273 (391)
T ss_pred HHHHHHHHHhCCCCeEEEEecccChhh--------HH-HHHHHhcCCCEEEEeccCCHH---H--------HHHHHHHHH
Confidence 5778888876 3566777656666543 22 778899999999996544321 1 122334456
Q ss_pred hCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEec-c
Q 045794 422 VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNC-I 500 (578)
Q Consensus 422 ~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~td-i 500 (578)
++| +.+.+|+-+. -++.+.++.+ ..+++.++++. +
T Consensus 274 k~G---ikvgVD~lnp----------------------------------------~tp~e~i~~l-~~~vD~Vllht~v 309 (391)
T PRK13307 274 KTG---IYSILDMLNV----------------------------------------EDPVKLLESL-KVKPDVVELHRGI 309 (391)
T ss_pred HcC---CEEEEEEcCC----------------------------------------CCHHHHHHHh-hCCCCEEEEcccc
Confidence 677 3445553321 1356777777 77899999885 6
Q ss_pred CCCCCCCCCCHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCC
Q 045794 501 DCDGQGKGFDMDLIKLISDA-VSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 501 ~~dG~~~G~d~~li~~l~~~-~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~ 561 (578)
+.. .+.+-++.++++++. .+++|.+.|||+ .+++.++.+ .|++.+++||++...+-.
T Consensus 310 dp~--~~~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~~-aGADivVVGsaIf~a~Dp 367 (391)
T PRK13307 310 DEE--GTEHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEALK-AGADILVVGRAITKSKDV 367 (391)
T ss_pred CCC--cccchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHHH-cCCCEEEEeHHHhCCCCH
Confidence 655 335567778877764 468999999997 889999985 999999999999865543
|
|
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=5e-05 Score=73.53 Aligned_cols=197 Identities=19% Similarity=0.237 Sum_probs=121.3
Q ss_pred HHHHHHHHcCCCeEEEE-----ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 311 ELARQYYKEGADEISFL-----NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~-----Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
|.|+.-++.||-.++.+ |+-++ +...|..+..+|++|-+.+.+|+..---|..+-+ ++-|-.
T Consensus 31 EQA~IAE~aGAvAVMaLervPaDiR~a--GGVaRMaDp~~i~eim~aVsIPVMAKvRIGH~~E-----------A~iLea 97 (296)
T COG0214 31 EQARIAEEAGAVAVMALERVPADIRAA--GGVARMADPKMIEEIMDAVSIPVMAKVRIGHFVE-----------AQILEA 97 (296)
T ss_pred HHHHHHHhcCceeEeehhhCcHHHHhc--cCccccCCHHHHHHHHHhcccceeeeeecchhHH-----------HHHHHH
Confidence 88999999999888775 44443 3456788999999999999999999888888754 777778
Q ss_pred cCcceeecchhhhc-cch-----------hhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeec
Q 045794 386 SGADKISIGSDAVY-AAE-----------DYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVT 453 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~-~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~ 453 (578)
.|+|.|--. ..++ .++ .|+| |.+...|.++.+.+ | .-
T Consensus 98 lgVD~IDES-EVLTPAD~~~Hi~K~~FtVPFVc-GarnLgEAlRRI~E--G--Aa------------------------- 146 (296)
T COG0214 98 LGVDMIDES-EVLTPADEEFHINKWKFTVPFVC-GARNLGEALRRISE--G--AA------------------------- 146 (296)
T ss_pred hCCCccccc-cccCCCchhhhcchhhcccceec-CcCcHHHHHHHHhh--h--HH-------------------------
Confidence 899965432 1121 000 1333 22222233333322 1 10
Q ss_pred cCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC-----CCCCCCHHHHHHHHhhCCCcE--E
Q 045794 454 DLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG-----QGKGFDMDLIKLISDAVSIPV--I 526 (578)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG-----~~~G~d~~li~~l~~~~~ipV--I 526 (578)
.+.++|-- .++ ++.+..+......-.---+...+.|. ..-+..+++++++++.-.+|| +
T Consensus 147 ------------MIRTKGEa-GTG-nv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~grLPVvnF 212 (296)
T COG0214 147 ------------MIRTKGEA-GTG-NVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKLGRLPVVNF 212 (296)
T ss_pred ------------HHhcCCCC-CCC-cHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHhCCCCeEee
Confidence 22233311 112 34554444433211000011122111 112345789999988778888 7
Q ss_pred EecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 527 asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
++|||.++.|..-+.+ +|||||.|||.++....+-+..+
T Consensus 213 AAGGvATPADAALMM~-LGadGVFVGSGIFKS~~P~~~A~ 251 (296)
T COG0214 213 AAGGVATPADAALMMQ-LGADGVFVGSGIFKSSNPEKRAK 251 (296)
T ss_pred cccCcCChhHHHHHHH-hCCCeEEecccccCCCCHHHHHH
Confidence 9999999999999985 99999999999987665544443
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00047 Score=69.38 Aligned_cols=186 Identities=15% Similarity=0.187 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHcCCCeEEEE----ec--c---------cCCCCCCCCchhHHHHHHHhhh-ccccEEEeCCccccccCCC
Q 045794 308 KPVELARQYYKEGADEISFL----NI--T---------GFRDFPLGDLPMLQVLRLTSEN-VFVPLTVGGGIRDFTDANG 371 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~----Dl--~---------~~~~~~~~~~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~ 371 (578)
.-+++++.+.+.|+|-|=+= |- | .+......-...+++++++.++ ..+|+.+=+-.+-+
T Consensus 32 ~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi----- 106 (265)
T COG0159 32 TSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPI----- 106 (265)
T ss_pred HHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHH-----
Confidence 45678888888999954430 11 0 0111112235678888888854 67888654433321
Q ss_pred CccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceee
Q 045794 372 RHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVR 451 (578)
Q Consensus 372 ~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~ 451 (578)
+.|.-.+=++++-++|+|.+++--.-.+.. +.+.+.+++||=+-|.+ +-
T Consensus 107 ~~~Gie~F~~~~~~~GvdGlivpDLP~ee~------------~~~~~~~~~~gi~~I~l-va------------------ 155 (265)
T COG0159 107 FNYGIEKFLRRAKEAGVDGLLVPDLPPEES------------DELLKAAEKHGIDPIFL-VA------------------ 155 (265)
T ss_pred HHhhHHHHHHHHHHcCCCEEEeCCCChHHH------------HHHHHHHHHcCCcEEEE-eC------------------
Confidence 112222227788899999998854444422 44567778888554333 11
Q ss_pred eccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc-CCCCCCCCC--C-HHHHHHHHhhCCCcEEE
Q 045794 452 VTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI-DCDGQGKGF--D-MDLIKLISDAVSIPVIA 527 (578)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi-~~dG~~~G~--d-~~li~~l~~~~~ipVIa 527 (578)
..+..+.++++.+..-+.+.+.++ -..|..... + -++++++++.+++||.+
T Consensus 156 -------------------------Ptt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~v 210 (265)
T COG0159 156 -------------------------PTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLV 210 (265)
T ss_pred -------------------------CCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEE
Confidence 223456777777776566666665 334444431 2 36889999988999999
Q ss_pred ecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 528 SSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 528 sGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
+=||+++++++++.+ . +|||+||||+-
T Consensus 211 GFGIs~~e~~~~v~~-~-ADGVIVGSAiV 237 (265)
T COG0159 211 GFGISSPEQAAQVAE-A-ADGVIVGSAIV 237 (265)
T ss_pred ecCcCCHHHHHHHHH-h-CCeEEEcHHHH
Confidence 999999999999996 6 99999999884
|
|
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0013 Score=64.62 Aligned_cols=185 Identities=11% Similarity=0.068 Sum_probs=121.1
Q ss_pred HHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 310 VELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
.+.++.+.+.|++++| +|+ |+..- .+-.--.+.++.+++.+..|+.+===+.+.+ .-++.+.++||
T Consensus 16 ~~el~~l~~~g~d~lH-iDvMDG~FV--PN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~----------~~i~~~~~~ga 82 (210)
T PRK08005 16 AEALTALHDAPLGSLH-LDIEDTSFI--NNITFGMKTIQAVAQQTRHPLSFHLMVSSPQ----------RWLPWLAAIRP 82 (210)
T ss_pred HHHHHHHHHCCCCEEE-EeccCCCcC--CccccCHHHHHHHHhcCCCCeEEEeccCCHH----------HHHHHHHHhCC
Confidence 3456667778999999 565 44211 1112225678888877777765543455554 35888999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCT 468 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (578)
+.|.+=.++..+.. ..++.+ ++.|. +.-++|...
T Consensus 83 d~It~H~Ea~~~~~-----------~~l~~I-k~~G~-k~GlAlnP~--------------------------------- 116 (210)
T PRK08005 83 GWIFIHAESVQNPS-----------EILADI-RAIGA-KAGLALNPA--------------------------------- 116 (210)
T ss_pred CEEEEcccCccCHH-----------HHHHHH-HHcCC-cEEEEECCC---------------------------------
Confidence 99999877654321 445555 44564 345555311
Q ss_pred EcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHh---hC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 469 VNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISD---AV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 469 ~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~---~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
++++.++.+.+. ++.|+++.+.-.-..+.+..+.++++++ .. ...+.+=||| +.+.+.++.+ .
T Consensus 117 ----------Tp~~~i~~~l~~-vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI-~~~~i~~l~~-a 183 (210)
T PRK08005 117 ----------TPLLPYRYLALQ-LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGI-TLRAARLLAA-A 183 (210)
T ss_pred ----------CCHHHHHHHHHh-cCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCC-CHHHHHHHHH-C
Confidence 234555555553 8999999998776677776655555543 32 2469999999 5788999885 9
Q ss_pred CchHHhhhhhhccCCCCHHHHHH
Q 045794 545 NASAALAAGIFHRKEVPIQSVKE 567 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~~~~~~~~ 567 (578)
||+.+++||++...+ ++.+..+
T Consensus 184 Gad~~V~GsaiF~~~-d~~~~~~ 205 (210)
T PRK08005 184 GAQHLVIGRALFTTA-NYDVTLS 205 (210)
T ss_pred CCCEEEEChHhhCCC-CHHHHHH
Confidence 999999999987543 3444433
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00044 Score=73.48 Aligned_cols=87 Identities=9% Similarity=0.145 Sum_probs=67.8
Q ss_pred HHHHHHHHHHcCCcEEEEeccC-CCCCCCCCCHHHHHHHHhhCCCcEEEecCC------------------CCHHHHHHH
Q 045794 480 AYELAKAVEDLGAGEILLNCID-CDGQGKGFDMDLIKLISDAVSIPVIASSGA------------------GAVEHFSDV 540 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~-~dG~~~G~d~~li~~l~~~~~ipVIasGGi------------------~s~eDi~~l 540 (578)
..++++.+++.|++.|=+..-. ......|.++++.+.+++.+++||++.|++ .+++++.++
T Consensus 237 ~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~ 316 (361)
T cd04747 237 LEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLER 316 (361)
T ss_pred HHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHH
Confidence 4567888999999886543321 122445667888888999899999999999 599999999
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
++..+||.|++|+++...+.-+..++
T Consensus 317 l~~g~~D~V~~gR~~iadP~~~~k~~ 342 (361)
T cd04747 317 LERGEFDLVAVGRALLSDPAWVAKVR 342 (361)
T ss_pred HHCCCCCeehhhHHHHhCcHHHHHHH
Confidence 98667999999999998886555543
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00038 Score=74.03 Aligned_cols=87 Identities=13% Similarity=0.202 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCC--CCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhh
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQ--GKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAG 553 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~--~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgs 553 (578)
+.+++++.+++.|++.|-++.-..... ..+. +.+.++.+++.+ ++|||++||+.+++++.++++. |||.|++|+
T Consensus 236 e~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~-gaD~V~~gR 314 (353)
T cd04735 236 DTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALET-GADLVAIGR 314 (353)
T ss_pred HHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHc-CCChHHHhH
Confidence 357889999999999998875333221 1222 456667777766 7999999999999999999974 999999999
Q ss_pred hhccCCCCHHHHH
Q 045794 554 IFHRKEVPIQSVK 566 (578)
Q Consensus 554 a~~~~~~~~~~~~ 566 (578)
++...+.-+..++
T Consensus 315 ~liadPdl~~k~~ 327 (353)
T cd04735 315 GLLVDPDWVEKIK 327 (353)
T ss_pred HHHhCccHHHHHH
Confidence 9988776555444
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=8.3e-05 Score=78.17 Aligned_cols=92 Identities=22% Similarity=0.303 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCC----CC-HHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCchHHhhhh
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKG----FD-MDLIKLISDAVS-IPVIASSGAGAVEHFSDVFRKTNASAALAAG 553 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G----~d-~~li~~l~~~~~-ipVIasGGi~s~eDi~~l~~~~G~~gv~vgs 553 (578)
...+++++++.|++.+|...-..-|+..+ +. +.|+.++.+.++ +|||++|||.+.+++..++. +||+||-+||
T Consensus 136 ~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAla-lGA~gVq~GT 214 (336)
T COG2070 136 TVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALA-LGADGVQMGT 214 (336)
T ss_pred CHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHH-hccHHHHhhh
Confidence 37899999999999999999988877552 32 478899999999 99999999999999999996 9999999999
Q ss_pred hhccCCCC--HHHHHHHHHhC
Q 045794 554 IFHRKEVP--IQSVKEHLYKE 572 (578)
Q Consensus 554 a~~~~~~~--~~~~~~~l~~~ 572 (578)
.|.-..-. -+..|+.|.+.
T Consensus 215 ~Fl~t~Ea~a~~~~K~~l~~a 235 (336)
T COG2070 215 RFLATKEADASDAYKQALLQA 235 (336)
T ss_pred hhhcccccCCCHHHHHHHhcc
Confidence 99743321 25666666544
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00084 Score=74.78 Aligned_cols=174 Identities=16% Similarity=0.231 Sum_probs=115.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH---HhhhccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL---TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~---i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
.+..+.++...+.|++.|++=+=+.. .....+.+++ ++++.++++.+ ++. ++-.
T Consensus 307 ~~~~~~l~~~l~~Gv~~vqlR~k~~~------~~~~~~~a~~l~~~~~~~~~~lii----nd~-------------~~lA 363 (502)
T PLN02898 307 RSTVDAVRAAIEGGATIVQLREKEAE------TREFIEEAKACLAICRSYGVPLLI----NDR-------------VDVA 363 (502)
T ss_pred chHHHHHHHHHHcCCCEEEEccCCCC------HHHHHHHHHHHHHHHHHhCCEEEE----cCh-------------HHHH
Confidence 35677888888999998887543221 1122334444 55556788875 332 5567
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
++.|++.|=+|-..+. ..++.+.+|.+++ +++.+.
T Consensus 364 ~~~~adGvHl~~~d~~----------------~~~~r~~~~~~~~-iG~S~h---------------------------- 398 (502)
T PLN02898 364 LACDADGVHLGQSDMP----------------VRLARSLLGPGKI-IGVSCK---------------------------- 398 (502)
T ss_pred HhcCCCEEEeChHhcC----------------HHHHHHhcCCCCE-EEEeCC----------------------------
Confidence 7789999988854332 2344555665543 444321
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc----CCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI----DCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi----~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~ 539 (578)
++ +-+.++.+.|++.+.+-.+ ++.+ ....+++.++.+.+...+||++-||| +.+++.+
T Consensus 399 ---------------~~-~e~~~a~~~gadyi~~gpif~t~tk~~-~~~~g~~~~~~~~~~~~~Pv~aiGGI-~~~~~~~ 460 (502)
T PLN02898 399 ---------------TP-EQAEQAWKDGADYIGCGGVFPTNTKAN-NKTIGLDGLREVCEASKLPVVAIGGI-SASNAAS 460 (502)
T ss_pred ---------------CH-HHHHHHhhcCCCEEEECCeecCCCCCC-CCCCCHHHHHHHHHcCCCCEEEECCC-CHHHHHH
Confidence 22 3456777889999974333 3332 34457899999988889999999999 5899999
Q ss_pred HHHhcCch---HHhhhhhhccCCCCHHHHHH
Q 045794 540 VFRKTNAS---AALAAGIFHRKEVPIQSVKE 567 (578)
Q Consensus 540 l~~~~G~~---gv~vgsa~~~~~~~~~~~~~ 567 (578)
+++ .|++ ||.+++++...+-....+++
T Consensus 461 ~~~-~G~~~~~gvav~~~i~~~~d~~~~~~~ 490 (502)
T PLN02898 461 VME-SGAPNLKGVAVVSALFDQEDVLKATRK 490 (502)
T ss_pred HHH-cCCCcCceEEEEeHHhcCCCHHHHHHH
Confidence 985 8999 99999999765544444443
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00049 Score=73.46 Aligned_cols=95 Identities=7% Similarity=-0.006 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCC---------------------CCCCCCCH-----HHHHHHHhhC------CCcEE
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCD---------------------GQGKGFDM-----DLIKLISDAV------SIPVI 526 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~d---------------------G~~~G~d~-----~li~~l~~~~------~ipVI 526 (578)
++.++++.+.+.|++.|++++.... |-+.|+-+ ..+.++++.+ ++|||
T Consensus 195 ~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIi 274 (385)
T PLN02495 195 DITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLS 274 (385)
T ss_pred hHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEE
Confidence 4788999999999999997653221 11233322 2233344444 48999
Q ss_pred EecCCCCHHHHHHHHHhcCchHHhhhhhhccC-CCC----HHHHHHHHHhCCC
Q 045794 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFHRK-EVP----IQSVKEHLYKEGI 574 (578)
Q Consensus 527 asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~-~~~----~~~~~~~l~~~~i 574 (578)
+.|||.+.+|+.+.+. +||+.|.++|+++.. +-. .+++.++|.++|+
T Consensus 275 GvGGI~s~~Da~e~i~-aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m~~~G~ 326 (385)
T PLN02495 275 GIGGVETGGDAAEFIL-LGADTVQVCTGVMMHGYPLVKNLCAELQDFMKKHNF 326 (385)
T ss_pred EECCCCCHHHHHHHHH-hCCCceeEeeeeeecCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999995 999999999998654 433 4556677777775
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.6e-05 Score=74.62 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+..++++.+.+.|++.|++....... ......+++.++++++.+++||.+.|||++.+| ++++++.
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~~~~~--~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d-----------~~~~l~~ 204 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGRTREQ--RYSGPADWDYIAEIKEAVSIPVIANGDIFSLED-----------ALRCLEQ 204 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCCCHHH--cCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHH-----------HHHHHHh
Confidence 378899999999999999986654321 112245789999999989999999999999977 9999998
Q ss_pred -Ccceeecchhhhcc
Q 045794 387 -GADKISIGSDAVYA 400 (578)
Q Consensus 387 -Ga~~vv~gt~~~~~ 400 (578)
|||.|.+|+.++.+
T Consensus 205 ~gad~V~igr~~l~~ 219 (231)
T cd02801 205 TGVDGVMIGRGALGN 219 (231)
T ss_pred cCCCEEEEcHHhHhC
Confidence 89999999999985
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=97.70 E-value=7.4e-05 Score=73.08 Aligned_cols=81 Identities=23% Similarity=0.391 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
.-+++++++.|+..+--.. +--|+.+|+ |...++.+.+..++|||+-+||+++.|..++++ +|+|||+++|++....
T Consensus 134 ~v~akrL~d~GcaavMPlg-sPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AME-lG~daVLvNTAiA~A~ 211 (247)
T PF05690_consen 134 PVLAKRLEDAGCAAVMPLG-SPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAME-LGADAVLVNTAIAKAK 211 (247)
T ss_dssp HHHHHHHHHTT-SEBEEBS-SSTTT---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHH-TT-SEEEESHHHHTSS
T ss_pred HHHHHHHHHCCCCEEEecc-cccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH-cCCceeehhhHHhccC
Confidence 5689999999998776554 445889998 889999999989999999999999999999996 9999999999998766
Q ss_pred CCHH
Q 045794 560 VPIQ 563 (578)
Q Consensus 560 ~~~~ 563 (578)
.+..
T Consensus 212 dPv~ 215 (247)
T PF05690_consen 212 DPVA 215 (247)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 5544
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00028 Score=82.49 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCCcEEEEecc-CCCC----CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhh
Q 045794 480 AYELAKAVEDLGAGEILLNCI-DCDG----QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi-~~dG----~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa 554 (578)
.+++++.+++.|++.|-++.- .... ...++..++.+++++.+++||+++|+|.+++++.+++++.+||.|++|+.
T Consensus 640 ~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~ 719 (765)
T PRK08255 640 AVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARP 719 (765)
T ss_pred HHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHH
Confidence 568999999999998887631 1110 01245567778899989999999999999999999998778999999999
Q ss_pred hccCC-CCHHHHH
Q 045794 555 FHRKE-VPIQSVK 566 (578)
Q Consensus 555 ~~~~~-~~~~~~~ 566 (578)
+..++ +.++.++
T Consensus 720 ~l~dP~~~~~~~~ 732 (765)
T PRK08255 720 HLADPAWTLHEAA 732 (765)
T ss_pred HHhCccHHHHHHH
Confidence 98888 5555444
|
|
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00013 Score=78.60 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccC--------------CCCCCCCCC-----HHHHHHHHhhC--CCcEEEecCCCCHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCID--------------CDGQGKGFD-----MDLIKLISDAV--SIPVIASSGAGAVEHF 537 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~--------------~dG~~~G~d-----~~li~~l~~~~--~ipVIasGGi~s~eDi 537 (578)
++.++++.+.+.|++.|++++.. ..|-++|+- ++.++++.+.+ ++|||+.|||.+.+|+
T Consensus 277 di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da 356 (409)
T PLN02826 277 DLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDA 356 (409)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHH
Confidence 47889999999999999988732 123355543 57888888877 7999999999999999
Q ss_pred HHHHHhcCchHHhhhhhhcc-CCCCHHH----HHHHHHhCCC
Q 045794 538 SDVFRKTNASAALAAGIFHR-KEVPIQS----VKEHLYKEGI 574 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~-~~~~~~~----~~~~l~~~~i 574 (578)
.+.+. +||+.|.++|++.. |+..+.+ ++++|.+.|+
T Consensus 357 ~e~i~-AGAs~VQv~Ta~~~~Gp~~i~~I~~eL~~~l~~~G~ 397 (409)
T PLN02826 357 YKKIR-AGASLVQLYTAFAYEGPALIPRIKAELAACLERDGF 397 (409)
T ss_pred HHHHH-hCCCeeeecHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 99996 99999999999755 6655444 4555555564
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00018 Score=76.19 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+.++.+.+.|++.|++..-..-....++ +++.+.++++.+ .+|||++|||++..|+.+++. +||++|++|+.+..
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLa-lGAd~V~igR~~l~ 317 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALA-SGADLVALGRPVIY 317 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 78899999999999987765544444555 689999998877 499999999999999999996 99999999998654
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0009 Score=65.47 Aligned_cols=194 Identities=15% Similarity=0.200 Sum_probs=109.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..+.++|+...+.|.|.|+|==-++.. .....+++++|++.+++|+++= |....+ .
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt-----~~~~~~~v~~ik~~~~lPvilfP~~~~~i------------------s 84 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVT-----EENVDNVVEAIKERTDLPVILFPGSPSGI------------------S 84 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCccccc-----HHHHHHHHHHHHhhcCCCEEEecCChhcc------------------C
Confidence 577889999999999998873222221 1345788999998899999774 333332 2
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC-----eEEEEEeccccccCCCCccccceeeeccCCCCCC
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ-----AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGE 460 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (578)
-+||.+.+=|..=.+++.|+-+--..+ .....+++-+ =|++.-| +
T Consensus 85 ~~aDavff~svLNS~n~~~i~gaq~~~----a~~~~~~~~e~i~~gYiV~~p~-------------------------~- 134 (240)
T COG1646 85 PYADAVFFPSVLNSDNPYWIVGAQVEG----AKLVGKLGLEVIPEGYIVVNPD-------------------------G- 134 (240)
T ss_pred ccCCeEEEEEEecCCCcccccchhhhh----hHHHHhhhheecceEEEEECCC-------------------------C-
Confidence 256666554433223333331100000 1111223211 1222111 1
Q ss_pred CcceEEEEEcccccCCCCCHHHHH---HHHHHc-CCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHH
Q 045794 461 EYAWYQCTVNGGREGRPIGAYELA---KAVEDL-GAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVE 535 (578)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~e~~---~~~~~~-G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~e 535 (578)
++.--|.-+..+++-.+++ ...+++ |. .++|. ...|+...| ..+.++++.+.+ |+|++|||+|.|
T Consensus 135 -----~va~v~~A~~ip~~~~~iaa~y~la~~~~g~-~~~Yl--Eagsga~~Pv~~e~v~~v~~~~--~LivGGGIrs~E 204 (240)
T COG1646 135 -----TVAWVGKAKPIPLDKEDIAAYYALAEKYLGM-PVVYL--EAGSGAGDPVPVEMVSRVLSDT--PLIVGGGIRSPE 204 (240)
T ss_pred -----ceeeecccccCCCCcHHHHHHHHHHHHHhCC-eEEEE--EecCCCCCCcCHHHHHHhhccc--eEEEcCCcCCHH
Confidence 1211122222233333322 222222 22 34444 444555555 778888877655 999999999999
Q ss_pred HHHHHHHhcCchHHhhhhhhccCCCCHHH
Q 045794 536 HFSDVFRKTNASAALAAGIFHRKEVPIQS 564 (578)
Q Consensus 536 Di~~l~~~~G~~gv~vgsa~~~~~~~~~~ 564 (578)
..+++.+ .|||.+++|+++|+..-.+.+
T Consensus 205 ~A~~~a~-agAD~IVtG~iiee~~~~~~~ 232 (240)
T COG1646 205 QAREMAE-AGADTIVTGTIIEEDPDKALE 232 (240)
T ss_pred HHHHHHH-cCCCEEEECceeecCHHHHHH
Confidence 9999985 899999999999987733333
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0001 Score=72.91 Aligned_cols=77 Identities=29% Similarity=0.342 Sum_probs=49.7
Q ss_pred CHHHHHHHHH-H---cCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 308 KPVELARQYY-K---EGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 308 ~p~~~a~~~~-~---~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+..++|..+. . .|.+ +.+++- +|+.+ .....+++...+..++|+.+||||||.|. +++
T Consensus 137 ~~~~iaa~~alA~~~~g~~-~iYLEaGSGa~~-----~v~~~v~~~~~~~~~~~LivGGGIrs~e~-----------A~~ 199 (230)
T PF01884_consen 137 DKPEIAAAAALAAEYLGMP-IIYLEAGSGAYG-----PVPEEVIAAVKKLSDIPLIVGGGIRSPEQ-----------ARE 199 (230)
T ss_dssp SHHHHHHHHHHHHHHTT-S-EEEEE--TTSSS------HHHHHHHHHHHSSSSEEEEESS--SHHH-----------HHH
T ss_pred CcHHHHHHHHHHHHHhCCC-EEEEEeCCCCCC-----CccHHHHHHHHhcCCccEEEeCCcCCHHH-----------HHH
Confidence 4445554443 1 3777 444666 66522 22244454444456899999999999865 999
Q ss_pred HHHcCcceeecchhhhccc
Q 045794 383 YFRSGADKISIGSDAVYAA 401 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~ 401 (578)
++++|||.||+|+...+++
T Consensus 200 ~~~aGAD~IVvGn~iee~~ 218 (230)
T PF01884_consen 200 MAEAGADTIVVGNAIEEDP 218 (230)
T ss_dssp HHCTTSSEEEESCHHHHHH
T ss_pred HHHCCCCEEEECCEEEEcc
Confidence 9999999999999988853
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00017 Score=74.54 Aligned_cols=96 Identities=22% Similarity=0.263 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCC-----------------CCCC-----CHHHHHHHHhhCC--CcEEEecCCCCH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQ-----------------GKGF-----DMDLIKLISDAVS--IPVIASSGAGAV 534 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~-----------------~~G~-----d~~li~~l~~~~~--ipVIasGGi~s~ 534 (578)
++.++++.+.+.|++.|++++...+++ ++|+ -+..++++.+.++ +|||..|||.|.
T Consensus 174 di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~ 253 (310)
T COG0167 174 DIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETG 253 (310)
T ss_pred HHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcH
Confidence 578999999999999999887444333 3454 3578888988876 999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccC-CCCH----HHHHHHHHhCCCe
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRK-EVPI----QSVKEHLYKEGIE 575 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~-~~~~----~~~~~~l~~~~i~ 575 (578)
+|..+.+. +||+.|-|+|+++.. +..+ +.+.++|++.|+.
T Consensus 254 ~DA~E~i~-aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g~~ 298 (310)
T COG0167 254 EDALEFIL-AGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKGFE 298 (310)
T ss_pred HHHHHHHH-cCCchheeeeeeeeeCchHHHHHHHHHHHHHHHcCCC
Confidence 99999985 999999999998754 6554 4455667776653
|
|
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00021 Score=75.48 Aligned_cols=77 Identities=23% Similarity=0.218 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+.++.+.+.|++.|++-+--.-....++ .++.+.++++.+ ++|||++|||++-.|+.+++. +||++|++|+++..
T Consensus 232 ~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLa-lGA~~V~iGr~~l~ 310 (351)
T cd04737 232 PEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALA-SGADAVAVGRPVLY 310 (351)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 57889999999999998532111111344 578888998777 699999999999999999996 99999999998876
Q ss_pred C
Q 045794 558 K 558 (578)
Q Consensus 558 ~ 558 (578)
+
T Consensus 311 ~ 311 (351)
T cd04737 311 G 311 (351)
T ss_pred H
Confidence 5
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00016 Score=71.58 Aligned_cols=87 Identities=24% Similarity=0.386 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
.-+++++++.||..|--.. +--|+.+|+ |...++.+.+..++|||..+||++++|+.++.+ +|+|||+++|++..-.
T Consensus 148 ~v~a~rLed~Gc~aVMPlg-sPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmE-lGaDgVL~nSaIakA~ 225 (267)
T CHL00162 148 PMLAKHLEDIGCATVMPLG-SPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAME-LGASGVLLNTAVAQAK 225 (267)
T ss_pred HHHHHHHHHcCCeEEeecc-CcccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHH-cCCCEEeecceeecCC
Confidence 4589999999997766443 445899998 899999999999999999999999999999996 9999999999998554
Q ss_pred CCHHHHHHHHH
Q 045794 560 VPIQSVKEHLY 570 (578)
Q Consensus 560 ~~~~~~~~~l~ 570 (578)
.+ .+..+.++
T Consensus 226 dP-~~mA~a~~ 235 (267)
T CHL00162 226 NP-EQMAKAMK 235 (267)
T ss_pred CH-HHHHHHHH
Confidence 43 44444443
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0029 Score=65.00 Aligned_cols=212 Identities=16% Similarity=0.206 Sum_probs=125.9
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
...+.+..++.+.. .|+.+....-...+...-..+++..+++..+||.+ .++ |..+++.+++.++.|+
T Consensus 31 ~~avi~aAe~~~~P--vii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~l-----HlD-----H~~~~e~i~~Al~~G~ 98 (281)
T PRK06806 31 VMGAIKAAEELNSP--IILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAV-----HFD-----HGMTFEKIKEALEIGF 98 (281)
T ss_pred HHHHHHHHHHhCCC--EEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHcCC
Confidence 33455555566655 44555431111112122335677788888899864 222 4556788999999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCT 468 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (578)
+.|-+....... .+.++. -.-+.+++..|| +.+..+.-. + | |++- ...
T Consensus 99 tsVm~d~s~~~~-~eni~~-----t~~v~~~a~~~g---v~veaE~gh--l----------------G--~~d~---~~~ 146 (281)
T PRK06806 99 TSVMFDGSHLPL-EENIQK-----TKEIVELAKQYG---ATVEAEIGR--V----------------G--GSED---GSE 146 (281)
T ss_pred CEEEEcCCCCCH-HHHHHH-----HHHHHHHHHHcC---CeEEEEeee--E----------------C--CccC---Ccc
Confidence 999995444432 222210 123455556676 333333221 1 0 0000 000
Q ss_pred EcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCC---CCCHHHHHHHHhhCCCcEEEec--CCCCHHHHHHHHHh
Q 045794 469 VNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK---GFDMDLIKLISDAVSIPVIASS--GAGAVEHFSDVFRK 543 (578)
Q Consensus 469 ~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~---G~d~~li~~l~~~~~ipVIasG--Gi~s~eDi~~l~~~ 543 (578)
..| .+--++.+..+..++.|+|.+-+---+.-|+.. ..+++.++++++.+++|+++-| || +.+++.++.+
T Consensus 147 ~~g---~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI-~~e~~~~~i~- 221 (281)
T PRK06806 147 DIE---MLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGI-SPEDFKKCIQ- 221 (281)
T ss_pred ccc---ceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCC-CHHHHHHHHH-
Confidence 001 112356666555667799999872222222333 3599999999999999999999 88 6788999985
Q ss_pred cCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 544 TNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 544 ~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
.|++++-|.|++... ....+++++.+
T Consensus 222 ~G~~kinv~T~i~~a--~~~a~~~~~~~ 247 (281)
T PRK06806 222 HGIRKINVATATFNS--VITAVNNLVLN 247 (281)
T ss_pred cCCcEEEEhHHHHHH--HHHHHHHHHHh
Confidence 999999999998763 35556666654
|
|
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00018 Score=74.54 Aligned_cols=92 Identities=21% Similarity=0.272 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHcCCcEEEEec-------cCCCC----------CCCCC-----CHHHHHHHHhhCC--CcEEEecCCCCH
Q 045794 479 GAYELAKAVEDLGAGEILLNC-------IDCDG----------QGKGF-----DMDLIKLISDAVS--IPVIASSGAGAV 534 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~td-------i~~dG----------~~~G~-----d~~li~~l~~~~~--ipVIasGGi~s~ 534 (578)
...+.+.++.+.|++.|++++ ++.+. -++|+ -+..++++++.++ +|||++|||.+.
T Consensus 177 ~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~ 256 (295)
T PF01180_consen 177 EPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSG 256 (295)
T ss_dssp HHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SH
T ss_pred HHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCH
Confidence 456777778889999988433 12221 13454 2567888888887 999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhh-ccCCCCHHHHHHHHHh
Q 045794 535 EHFSDVFRKTNASAALAAGIF-HRKEVPIQSVKEHLYK 571 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~-~~~~~~~~~~~~~l~~ 571 (578)
+|+.+.+. .||+.|.++|++ +.|+..+.++.+-|++
T Consensus 257 ~da~e~l~-aGA~~Vqv~Sal~~~Gp~~~~~i~~~L~~ 293 (295)
T PF01180_consen 257 EDAIEFLM-AGASAVQVCSALIYRGPGVIRRINRELEE 293 (295)
T ss_dssp HHHHHHHH-HTESEEEESHHHHHHGTTHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCHheechhhhhcCcHHHHHHHHHHHh
Confidence 99999996 999999999999 6688888888877754
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >KOG2333 consensus Uncharacterized conserved protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00015 Score=77.08 Aligned_cols=102 Identities=18% Similarity=0.179 Sum_probs=81.6
Q ss_pred EEEcccccCCCCCHHHHHHHHH-HcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC-C-CcEEEecCCCCHHHHHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVE-DLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV-S-IPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~-~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~-~-ipVIasGGi~s~eDi~~l~~ 542 (578)
|+++-+....-.-+-+++.++. +.|+..|.+|.++|..+++-. ||+.+.++++.. . +|+|.+|.|-|.+|..+-+.
T Consensus 395 VKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~ 474 (614)
T KOG2333|consen 395 VKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLN 474 (614)
T ss_pred EEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhh
Confidence 3344333332334567888887 899999999999999999865 999999998766 3 89999999999999666554
Q ss_pred hcC-chHHhhhhhhccCCCCHHHHHHH
Q 045794 543 KTN-ASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 543 ~~G-~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
..+ +++||||+...-++|.|.|+++.
T Consensus 475 ~~p~v~svMIaRGALIKPWIFtEIkeq 501 (614)
T KOG2333|consen 475 QNPNVDSVMIARGALIKPWIFTEIKEQ 501 (614)
T ss_pred cCCCcceEEeeccccccchHhhhhhhh
Confidence 443 99999999999999999999863
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00086 Score=66.99 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=60.1
Q ss_pred HHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCC--CCHHH----HHHHHHhcCchHHhhhhhhc
Q 045794 483 LAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGA--GAVEH----FSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 483 ~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi--~s~eD----i~~l~~~~G~~gv~vgsa~~ 556 (578)
.++.+.+.|++.|-+.. ..+++.++++.+.+.+||+++||+ .+.+| +.++.+ .|++|+++|+++.
T Consensus 148 ~~~~a~~~GaD~Ik~~~--------~~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~-~Ga~gv~vg~~i~ 218 (235)
T cd00958 148 AARIGAELGADIVKTKY--------TGDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAME-AGAAGVAVGRNIF 218 (235)
T ss_pred HHHHHHHHCCCEEEecC--------CCCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHH-cCCcEEEechhhh
Confidence 36778899999777631 127899999999899999999997 56655 788885 9999999999998
Q ss_pred cCCCCHHHHHHHHH
Q 045794 557 RKEVPIQSVKEHLY 570 (578)
Q Consensus 557 ~~~~~~~~~~~~l~ 570 (578)
+.+- +.+..+.|+
T Consensus 219 ~~~d-p~~~~~~~~ 231 (235)
T cd00958 219 QRPD-PVAMLRAIS 231 (235)
T ss_pred cCCC-HHHHHHHHH
Confidence 7774 444444443
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0026 Score=68.35 Aligned_cols=172 Identities=11% Similarity=0.101 Sum_probs=111.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
-|..++++...+.|++.|.+=+=+.... .-.....-++++++..++++.+ ++. ++-.++.
T Consensus 217 td~~~~ve~aL~aGv~~VQLReK~ls~~---el~~la~~l~~l~~~~gv~LiI----ND~-------------~dlAl~~ 276 (437)
T PRK12290 217 VDDVEWIERLLPLGINTVQLRIKDPQQA---DLEQQIIRAIALGREYNAQVFI----NDY-------------WQLAIKH 276 (437)
T ss_pred eCCHHHHHHHHhCCCCEEEEeCCCCCHH---HHHHHHHHHHHHHHHhCCEEEE----ECH-------------HHHHHHc
Confidence 3445788899999998877653332100 0011223344555666788874 443 6678889
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
||+.|=+|-.-+.. .++.+..|+. .++++.+.
T Consensus 277 gAdGVHLGQeDL~~----------------~~aR~ilg~~-~iIGvStH------------------------------- 308 (437)
T PRK12290 277 QAYGVHLGQEDLEE----------------ANLAQLTDAG-IRLGLSTH------------------------------- 308 (437)
T ss_pred CCCEEEcChHHcch----------------hhhhhhcCCC-CEEEEecC-------------------------------
Confidence 99999999644431 2333334443 23334321
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC----CCCCHHHHHHHHhhC---------CCcEEEecCCCC
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG----KGFDMDLIKLISDAV---------SIPVIASSGAGA 533 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~----~G~d~~li~~l~~~~---------~ipVIasGGi~s 533 (578)
++ +-+.++.+.|++.|.+-.+-...+. ....++.++++++.+ .+||+|-||| +
T Consensus 309 ------------s~-eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~ 374 (437)
T PRK12290 309 ------------GY-YELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-D 374 (437)
T ss_pred ------------CH-HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-C
Confidence 22 3456677899999997665444333 234677777766544 6999999999 7
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCC
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~ 561 (578)
.+++.++.+ +|++||.+-|++...+-+
T Consensus 375 ~~Ni~~vl~-aGa~GVAVVSAI~~A~DP 401 (437)
T PRK12290 375 QSNAEQVWQ-CGVSSLAVVRAITLAEDP 401 (437)
T ss_pred HHHHHHHHH-cCCCEEEEehHhhcCCCH
Confidence 899999995 999999999999765543
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0012 Score=66.91 Aligned_cols=184 Identities=17% Similarity=0.235 Sum_probs=111.8
Q ss_pred HHHHHHHHHcCCCeEEEEec---ccCCCCC-------------CCCchhHHHHHHHh-hhccccEEEeCCccccccCCCC
Q 045794 310 VELARQYYKEGADEISFLNI---TGFRDFP-------------LGDLPMLQVLRLTS-ENVFVPLTVGGGIRDFTDANGR 372 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl---~~~~~~~-------------~~~~~~~~~i~~i~-~~~~~pi~~gGGir~~~d~~~~ 372 (578)
.++++.+.+.|+|-|=+ -+ |-.-||+ ..-..-++++++++ +...+|+.+=+-.+.+-.
T Consensus 27 ~~~~~~l~~~GaD~iEi-GiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~---- 101 (259)
T PF00290_consen 27 LEILKALEEAGADIIEI-GIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQ---- 101 (259)
T ss_dssp HHHHHHHHHTTBSSEEE-E--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHH----
T ss_pred HHHHHHHHHcCCCEEEE-CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhc----
Confidence 67888888888885443 11 1111111 11123357788888 667899977655443210
Q ss_pred ccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeee
Q 045794 373 HYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRV 452 (578)
Q Consensus 373 ~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~ 452 (578)
|.--+=++++-++|++-+++=-.-++.. +.+.++++++|=. ++.-+-
T Consensus 102 -~G~e~F~~~~~~aGvdGlIipDLP~ee~------------~~~~~~~~~~gl~-~I~lv~------------------- 148 (259)
T PF00290_consen 102 -YGIERFFKEAKEAGVDGLIIPDLPPEES------------EELREAAKKHGLD-LIPLVA------------------- 148 (259)
T ss_dssp -H-HHHHHHHHHHHTEEEEEETTSBGGGH------------HHHHHHHHHTT-E-EEEEEE-------------------
T ss_pred -cchHHHHHHHHHcCCCEEEEcCCChHHH------------HHHHHHHHHcCCe-EEEEEC-------------------
Confidence 1111226667788999999865545432 3456777888843 333222
Q ss_pred ccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc-CCCCCCCCCC---HHHHHHHHhhCCCcEEEe
Q 045794 453 TDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI-DCDGQGKGFD---MDLIKLISDAVSIPVIAS 528 (578)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi-~~dG~~~G~d---~~li~~l~~~~~ipVIas 528 (578)
..+..+.++++.+..-+.|-+... ...|.....+ .+.++++++.++.||.++
T Consensus 149 ------------------------p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vG 204 (259)
T PF00290_consen 149 ------------------------PTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVG 204 (259)
T ss_dssp ------------------------TTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEE
T ss_pred ------------------------CCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEe
Confidence 223466777777765554444343 3344444332 267888899889999999
Q ss_pred cCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 529 SGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 529 GGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
=||+++++++++. .++|||+|||++-+
T Consensus 205 FGI~~~e~~~~~~--~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 205 FGISTPEQAKKLA--AGADGVIVGSAFVK 231 (259)
T ss_dssp SSS-SHHHHHHHH--TTSSEEEESHHHHH
T ss_pred cCCCCHHHHHHHH--ccCCEEEECHHHHH
Confidence 9999999999996 69999999999853
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00019 Score=75.61 Aligned_cols=88 Identities=15% Similarity=0.245 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC-------------CCCCCCCC-----HHHHHHHHhhC--CCcEEEecCCCCHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC-------------DGQGKGFD-----MDLIKLISDAV--SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~-------------dG~~~G~d-----~~li~~l~~~~--~ipVIasGGi~s~eDi~ 538 (578)
++.++++.+++.|++.|++++... -|-++|+- +..++++.+.+ ++|||+.|||.+.+|+.
T Consensus 225 ~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~ 304 (335)
T TIGR01036 225 DLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDAL 304 (335)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence 478999999999999999876432 23344442 35777777766 69999999999999999
Q ss_pred HHHHhcCchHHhhhhhhcc-CCCCHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHR-KEVPIQSVKE 567 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~-~~~~~~~~~~ 567 (578)
+.+. .||+.|.++|++.. |+.-+..+++
T Consensus 305 e~l~-aGA~~Vqv~ta~~~~Gp~~~~~i~~ 333 (335)
T TIGR01036 305 EKIR-AGASLLQIYSGFIYWGPPLVKEIVK 333 (335)
T ss_pred HHHH-cCCcHHHhhHHHHHhCchHHHHHHh
Confidence 9996 89999999999865 6765665554
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.002 Score=64.29 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=114.3
Q ss_pred CCHHH---HHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVE---LARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~---~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.||.. .++.+.+.|++++| +|+ |+..- .+-.--.+.++++++.+ .+|+.+--=+.+.+ ..++
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H-~DimDg~fv--pn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~----------~~i~ 82 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLH-VDVMDGHFV--PNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPE----------KWVD 82 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEE-EecccCccC--CCcCcCHHHHHHHHhcCCCCCEEEEECCCCHH----------HHHH
Confidence 45554 45556667999999 565 34321 11122367888888765 67765433344443 3578
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
.+.++|||.+.+=.++-... + .+.++.+ +++|. ++-+++..
T Consensus 83 ~~~~~Gad~itvH~ea~~~~---~-------~~~l~~i-k~~G~-~~gval~p--------------------------- 123 (228)
T PTZ00170 83 DFAKAGASQFTFHIEATEDD---P-------KAVARKI-REAGM-KVGVAIKP--------------------------- 123 (228)
T ss_pred HHHHcCCCEEEEeccCCchH---H-------HHHHHHH-HHCCC-eEEEEECC---------------------------
Confidence 89999999998855443210 0 0233443 45663 34444431
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHH-cCCcEEEEeccC--CCCCCCCC-CHHHHHHHHhhC-CCcEEEecCCCCHHH
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVED-LGAGEILLNCID--CDGQGKGF-DMDLIKLISDAV-SIPVIASSGAGAVEH 536 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~-~G~~~ii~tdi~--~dG~~~G~-d~~li~~l~~~~-~ipVIasGGi~s~eD 536 (578)
..+ .+.++.+.+ ..++.|+++.+. .+|....+ .++.++++++.. ...+.+.||| +.+.
T Consensus 124 ---------------~t~-~e~l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI-~~~t 186 (228)
T PTZ00170 124 ---------------KTP-VEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGI-NLET 186 (228)
T ss_pred ---------------CCC-HHHHHHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCC-CHHH
Confidence 112 333334432 236777777666 33333222 256667776654 4678999999 5688
Q ss_pred HHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 537 FSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 537 i~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+..+.+ .|++.+++||++...+ ++++..+.++
T Consensus 187 i~~~~~-aGad~iVvGsaI~~a~-d~~~~~~~i~ 218 (228)
T PTZ00170 187 IDIAAD-AGANVIVAGSSIFKAK-DRKQAIELLR 218 (228)
T ss_pred HHHHHH-cCCCEEEEchHHhCCC-CHHHHHHHHH
Confidence 999885 8999999999997654 3444444443
|
|
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.002 Score=67.20 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=50.7
Q ss_pred HHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc-CCCCH----HHHHHHHHhCCC
Q 045794 511 MDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR-KEVPI----QSVKEHLYKEGI 574 (578)
Q Consensus 511 ~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~-~~~~~----~~~~~~l~~~~i 574 (578)
+..+.++.+.+ ++|||++|||.+.+|+.+.+. +||++|.++|+++. |+-.+ ++++++|.+.|+
T Consensus 228 l~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~-aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~ 297 (310)
T PRK02506 228 LANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHIL-CGASMVQVGTALHKEGPAVFERLTKELKAIMAEKGY 297 (310)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH-cCCCHHhhhHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 35666776777 699999999999999999995 99999999999876 56544 456667777775
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0068 Score=62.32 Aligned_cols=215 Identities=12% Similarity=0.166 Sum_probs=128.9
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
-..+.+..++.++.-| +.+....-...+-..-..+++.++++..+||.+ .++ |..+++.+++.++.|+
T Consensus 31 ~~avi~AAe~~~~PvI--l~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~l-----HlD-----H~~~~e~i~~Ai~~Gf 98 (286)
T PRK06801 31 LRALFAAAKQERSPFI--INIAEVHFKYISLESLVEAVKFEAARHDIPVVL-----NLD-----HGLHFEAVVRALRLGF 98 (286)
T ss_pred HHHHHHHHHHHCCCEE--EEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHhCC
Confidence 3345555556666544 444321111122234567788888888999864 222 5667888999999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCT 468 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (578)
+.|.+.-..+.. ++.+. ....+.+++..||- .|-.-+..-.+. | + .+.
T Consensus 99 tSVm~D~S~l~~-eeNi~-----~t~~v~~~a~~~gv-~VE~ElG~vgg~---------------e----~------~v~ 146 (286)
T PRK06801 99 SSVMFDGSTLEY-EENVR-----QTREVVKMCHAVGV-SVEAELGAVGGD---------------E----G------GAL 146 (286)
T ss_pred cEEEEcCCCCCH-HHHHH-----HHHHHHHHHHHcCC-eEEeecCcccCC---------------C----C------Ccc
Confidence 999995444431 12111 01224445667773 232333322110 0 0 000
Q ss_pred EcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecC--CCCHHHHHHHHHh
Q 045794 469 VNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSG--AGAVEHFSDVFRK 543 (578)
Q Consensus 469 ~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGG--i~s~eDi~~l~~~ 543 (578)
..........++.+..+.+++.|++.+-+.-=+.-|.+.+ .|++.++++++.+++|+++-|| +. .++++++.+
T Consensus 147 ~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~-~e~~~~~i~- 224 (286)
T PRK06801 147 YGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS-DADFRRAIE- 224 (286)
T ss_pred cCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHHH-
Confidence 0000011122556666666689999888833345555555 5999999999999999999999 74 578999885
Q ss_pred cCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 544 TNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 544 ~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
.|+.++-++|.+...- ...++++|.+
T Consensus 225 ~Gi~KINv~T~~~~a~--~~~~~~~~~~ 250 (286)
T PRK06801 225 LGIHKINFYTGMSQAA--LAAVEQRMTH 250 (286)
T ss_pred cCCcEEEehhHHHHHH--HHHHHHHHHh
Confidence 9999999999886433 4455666543
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.004 Score=62.24 Aligned_cols=176 Identities=22% Similarity=0.199 Sum_probs=116.4
Q ss_pred HHHHHHHHcCCCeEEEEe-cccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChH------HHHHHH
Q 045794 311 ELARQYYKEGADEISFLN-ITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSL------EVASEY 383 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~D-l~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~------~~~~~~ 383 (578)
+-|..-.+.||++|-+.+ |. .+| -.+...+|+.+.+.+.+||.+ =||--. -.|.|+.. ++++.+
T Consensus 12 ~~a~~A~~~GAdRiELc~~L~--~GG---lTPS~g~i~~~~~~~~ipv~v--MIRPR~--gdF~Ys~~E~~~M~~di~~~ 82 (248)
T PRK11572 12 ECALTAQQAGADRIELCAAPK--EGG---LTPSLGVLKSVRERVTIPVHP--IIRPRG--GDFCYSDGEFAAMLEDIATV 82 (248)
T ss_pred HHHHHHHHcCCCEEEEccCcC--CCC---cCCCHHHHHHHHHhcCCCeEE--EEecCC--CCCCCCHHHHHHHHHHHHHH
Confidence 445556678999998864 32 233 267789999999988899876 455432 24788774 467888
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.++|++-+|+|...-. ...+.+.++++.+.-++-.+++ =|.+|.
T Consensus 83 ~~~GadGvV~G~L~~d---------g~vD~~~~~~Li~~a~~~~vTF-------------------HRAfD~-------- 126 (248)
T PRK11572 83 RELGFPGLVTGVLDVD---------GHVDMPRMRKIMAAAGPLAVTF-------------------HRAFDM-------- 126 (248)
T ss_pred HHcCCCEEEEeeECCC---------CCcCHHHHHHHHHHhcCCceEE-------------------echhhc--------
Confidence 8999999999975433 2345677787776554323333 012221
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~ 542 (578)
. .++.+.++.+.++|+++|+-..=.. .-. -.++.|+++.+.. +.-|+++||| +.+.+.++.
T Consensus 127 ------------~-~d~~~al~~l~~lG~~rILTSGg~~-~a~--~g~~~L~~lv~~a~~~~Im~GgGV-~~~Nv~~l~- 188 (248)
T PRK11572 127 ------------C-ANPLNALKQLADLGVARILTSGQQQ-DAE--QGLSLIMELIAASDGPIIMAGAGV-RLSNLHKFL- 188 (248)
T ss_pred ------------c-CCHHHHHHHHHHcCCCEEECCCCCC-CHH--HHHHHHHHHHHhcCCCEEEeCCCC-CHHHHHHHH-
Confidence 1 2678889999999999998432111 111 1467788776644 3338999999 568899987
Q ss_pred hcCchHH
Q 045794 543 KTNASAA 549 (578)
Q Consensus 543 ~~G~~gv 549 (578)
.+|+..+
T Consensus 189 ~tG~~~~ 195 (248)
T PRK11572 189 DAGVREV 195 (248)
T ss_pred HcCCCEE
Confidence 4887644
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00029 Score=73.86 Aligned_cols=91 Identities=21% Similarity=0.234 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH-
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR- 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~- 385 (578)
.+.+++|+.+.+.|++.|++-.-+.. +......+.+.|+++++.+++||..-|||++.+| ++++++
T Consensus 149 ~~~~~~a~~le~~G~d~i~vh~rt~~--~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~d-----------a~~~l~~ 215 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQALTIHGRTRA--CLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLK-----------ARAVLDY 215 (321)
T ss_pred chHHHHHHHHHHhCCCEEEEecCccc--cccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHH-----------HHHHHhc
Confidence 47889999999999999987654432 1112236789999999999999999999999977 999997
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHh
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRV 422 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (578)
.|||-|.+|+.++.| |-+++++.+.
T Consensus 216 ~gadgVmiGR~~l~n------------P~if~~~~~~ 240 (321)
T PRK10415 216 TGADALMIGRAAQGR------------PWIFREIQHY 240 (321)
T ss_pred cCCCEEEEChHhhcC------------ChHHHHHHHH
Confidence 699999999999985 3566777543
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.004 Score=60.63 Aligned_cols=171 Identities=15% Similarity=0.157 Sum_probs=113.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+-+++++.+.+.|++-+=|. ++. ..-++.|++++++.. .+.+| |.|.+.++ +++..+
T Consensus 16 ~~a~~ia~al~~gGi~~iEit-~~t--------p~a~~~I~~l~~~~~-~~~vGAGTVl~~e~-----------a~~ai~ 74 (201)
T PRK06015 16 EHAVPLARALAAGGLPAIEIT-LRT--------PAALDAIRAVAAEVE-EAIVGAGTILNAKQ-----------FEDAAK 74 (201)
T ss_pred HHHHHHHHHHHHCCCCEEEEe-CCC--------ccHHHHHHHHHHHCC-CCEEeeEeCcCHHH-----------HHHHHH
Confidence 467789999999998855443 222 223788999988764 47787 67777755 999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.++--. + ++++++. ++++|- .+
T Consensus 75 aGA~FivSP~--~-------------~~~vi~~-a~~~~i----~~---------------------------------- 100 (201)
T PRK06015 75 AGSRFIVSPG--T-------------TQELLAA-ANDSDV----PL---------------------------------- 100 (201)
T ss_pred cCCCEEECCC--C-------------CHHHHHH-HHHcCC----CE----------------------------------
Confidence 9999776532 2 2355555 556651 11
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
+.| -.++- .+..+.++|++.+=+..-+.- .|+ ..++.++.-+ ++|++..||| +.+.+.+.++ .
T Consensus 101 ---iPG-----~~Tpt-Ei~~A~~~Ga~~vK~FPa~~~---GG~--~yikal~~plp~~~l~ptGGV-~~~n~~~~l~-a 164 (201)
T PRK06015 101 ---LPG-----AATPS-EVMALREEGYTVLKFFPAEQA---GGA--AFLKALSSPLAGTFFCPTGGI-SLKNARDYLS-L 164 (201)
T ss_pred ---eCC-----CCCHH-HHHHHHHCCCCEEEECCchhh---CCH--HHHHHHHhhCCCCcEEecCCC-CHHHHHHHHh-C
Confidence 112 12333 445667899999988884332 234 5677777655 6999999999 5689999986 7
Q ss_pred CchHHhhhhhhccCCC----CHHHHHHH
Q 045794 545 NASAALAAGIFHRKEV----PIQSVKEH 568 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~----~~~~~~~~ 568 (578)
|+..+..|+.+..+.+ .++++.+.
T Consensus 165 g~~~~~ggs~l~~~~~~~~~~~~~i~~~ 192 (201)
T PRK06015 165 PNVVCVGGSWVAPKELVAAGDWAGITKL 192 (201)
T ss_pred CCeEEEEchhhCCchhhhcccHHHHHHH
Confidence 6666766888865432 34445443
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00043 Score=73.18 Aligned_cols=76 Identities=21% Similarity=0.152 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCC-CCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGK-GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~-G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+-++.+.+.|++.|++..-.-..... ...++.+.++++.+++|||+.|||++..|+.+++. +||++|++|+++..
T Consensus 247 ~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALa-LGA~aV~iGr~~l~ 323 (361)
T cd04736 247 AEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKALA-LGANAVLLGRATLY 323 (361)
T ss_pred HHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 567888999999999987532211111 13588999998888999999999999999999995 99999999998874
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00027 Score=70.26 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++|+.+.+.|++.||+ | .-..+ ....+++.|+++++.+. +||..-|||++.+| ++++++
T Consensus 148 ~~~~~~a~~l~~aGad~i~V-d--~~~~g--~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~ed-----------a~e~l~ 211 (231)
T TIGR00736 148 LDELIDALNLVDDGFDGIHV-D--AMYPG--KPYADMDLLKILSEEFNDKIIIGNNSIDDIES-----------AKEMLK 211 (231)
T ss_pred chHHHHHHHHHHcCCCEEEE-e--eCCCC--CchhhHHHHHHHHHhcCCCcEEEECCcCCHHH-----------HHHHHH
Confidence 36789999999999999997 4 21111 11268999999999884 99988899999977 999999
Q ss_pred cCcceeecchhhhccc
Q 045794 386 SGADKISIGSDAVYAA 401 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~ 401 (578)
.|||-|.+|+.++.++
T Consensus 212 ~GAd~VmvgR~~l~~~ 227 (231)
T TIGR00736 212 AGADFVSVARAILKGN 227 (231)
T ss_pred hCCCeEEEcHhhccCC
Confidence 9999999999988753
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00042 Score=73.59 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCCCCC-CC-CCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhh
Q 045794 478 IGAYELAKAVEDLGAGEILLNCIDCDGQG-KG-FDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAG 553 (578)
Q Consensus 478 ~~~~e~~~~~~~~G~~~ii~tdi~~dG~~-~G-~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgs 553 (578)
....++++.+++.|++.|.++..+++..+ .| -++..+.++.+..++|||+ |++.+.++.+++++ +|||+|++|+
T Consensus 142 ~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~-aGaDgV~~G~ 217 (369)
T TIGR01304 142 QNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLMR-TGAAGVIVGP 217 (369)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHH-cCCCEEEECC
Confidence 36789999999999999999998877655 33 3788888888888999998 88999999999996 9999999775
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00075 Score=70.57 Aligned_cols=140 Identities=19% Similarity=0.285 Sum_probs=104.0
Q ss_pred cEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEecc
Q 045794 356 PLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPR 435 (578)
Q Consensus 356 pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~ 435 (578)
.+.+|.+|.+.|+ +.+.+..+..+|+|.|+|.|+-=+. .|. .++++-+.+.|+.-.|+.
T Consensus 239 qll~gAaiGTre~-------dK~rl~ll~~aGvdvviLDSSqGnS--~~q-------iemik~iK~~yP~l~Via----- 297 (503)
T KOG2550|consen 239 QLLCGAAIGTRDD-------DKERLDLLVQAGVDVVILDSSQGNS--IYQ-------LEMIKYIKETYPDLQIIA----- 297 (503)
T ss_pred ceeeeeccccccc-------hhHHHHHhhhcCCcEEEEecCCCcc--hhH-------HHHHHHHHhhCCCceeec-----
Confidence 4667888888776 4567777889999999997654432 222 488999999997533332
Q ss_pred ccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEE---------Ee-ccCCCCC
Q 045794 436 RVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEIL---------LN-CIDCDGQ 505 (578)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii---------~t-di~~dG~ 505 (578)
| ++-..+-++.|...|+|.+= +| .+-.-|.
T Consensus 298 -----------------------G-----------------NVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~Gr 337 (503)
T KOG2550|consen 298 -----------------------G-----------------NVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGR 337 (503)
T ss_pred -----------------------c-----------------ceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccC
Confidence 1 12235678888899998653 22 4566677
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
-+|.-.--+.+++....+||||-|||.+..++.+++. +|++.||.|+.+..
T Consensus 338 pQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~-lGAstVMmG~lLAg 388 (503)
T KOG2550|consen 338 PQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALG-LGASTVMMGGLLAG 388 (503)
T ss_pred CcccchhhHHHHHHhcCCceeecCCcCccchhHhhhh-cCchhheecceeee
Confidence 7777666666777888999999999999999999995 99999999997753
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0021 Score=66.98 Aligned_cols=163 Identities=11% Similarity=-0.001 Sum_probs=107.2
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
-.+.++...+.|++.|++=+=+.... ......+.++++++..++++.+- +. ++-+++.|+
T Consensus 146 ~~~~~~~~l~~g~~~vqlR~k~~~~~---~~~~~~~~l~~~~~~~~~~liin----d~-------------~~la~~~~~ 205 (312)
T PRK08999 146 FLARLERALAAGIRLIQLRAPQLPPA---AYRALARAALGLCRRAGAQLLLN----GD-------------PELAEDLGA 205 (312)
T ss_pred HHHHHHHHHHCCCcEEEEeCCCCCHH---HHHHHHHHHHHHHHHhCCEEEEE----Cc-------------HHHHHhcCC
Confidence 35667676788999988865443110 11123344555556667888764 32 556788899
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCT 468 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (578)
+.|=+|..... ..+..+ +|++. ++++-+.
T Consensus 206 ~GvHl~~~d~~----------------~~~~r~-~~~~~-~ig~S~h--------------------------------- 234 (312)
T PRK08999 206 DGVHLTSAQLA----------------ALAARP-LPAGR-WVAASCH--------------------------------- 234 (312)
T ss_pred CEEEcChhhcC----------------hHhhcc-CCCCC-EEEEecC---------------------------------
Confidence 99988853332 112222 55443 3333321
Q ss_pred EcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC---CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 045794 469 VNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG---KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTN 545 (578)
Q Consensus 469 ~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~---~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G 545 (578)
+ .+-++++.+.|++.+.+-.+-...+. ....++.++++++.+++||+|-||| +.+++.++.+ +|
T Consensus 235 ----------~-~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~-~g 301 (312)
T PRK08999 235 ----------D-AEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEARE-HG 301 (312)
T ss_pred ----------C-HHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHH-hC
Confidence 1 23456777889999997665433333 3346889999999899999999999 8999999985 99
Q ss_pred chHHhhhhhh
Q 045794 546 ASAALAAGIF 555 (578)
Q Consensus 546 ~~gv~vgsa~ 555 (578)
++|+.+-+++
T Consensus 302 ~~gva~i~~~ 311 (312)
T PRK08999 302 AQGIAGIRGL 311 (312)
T ss_pred CCEEEEEEEe
Confidence 9999877665
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0093 Score=61.19 Aligned_cols=210 Identities=17% Similarity=0.206 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
....+.+..++.+.+-|+=+.-...+ ..+ .....+++.++++..+||.+ .++ |..+++.++++++.|
T Consensus 25 ~~~avi~AAee~~sPvIl~~~~~~~~--~~~-~~~~~~~~~~a~~~~vPV~l-----HLD-----Hg~~~e~i~~ai~~G 91 (283)
T PRK08185 25 FLRAVVEEAEANNAPAIIAIHPNELD--FLG-DNFFAYVRERAKRSPVPFVI-----HLD-----HGATIEDVMRAIRCG 91 (283)
T ss_pred HHHHHHHHHHHhCCCEEEEeCcchhh--hcc-HHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHcC
Confidence 33455566666667644333222221 112 34677888889889999864 332 566788999999999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
.+-|.+.-..+.. ++ |.++.+++. ..|| +-+..-+ +.+ + |.
T Consensus 92 f~SVM~D~S~l~~-ee--------Ni~~t~~vv~~a~~~g---v~vE~El--G~v----------------g--~~---- 135 (283)
T PRK08185 92 FTSVMIDGSLLPY-EE--------NVALTKEVVELAHKVG---VSVEGEL--GTI----------------G--NT---- 135 (283)
T ss_pred CCEEEEeCCCCCH-HH--------HHHHHHHHHHHHHHcC---CeEEEEE--eec----------------c--Cc----
Confidence 9999995544432 22 234444444 6676 2222221 211 0 00
Q ss_pred EEEEEccccc-CCCCCHHHHHHHHHHcCCcEEEE-----eccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHH-HH
Q 045794 465 YQCTVNGGRE-GRPIGAYELAKAVEDLGAGEILL-----NCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVE-HF 537 (578)
Q Consensus 465 ~~~~~~g~~~-~~~~~~~e~~~~~~~~G~~~ii~-----tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~e-Di 537 (578)
+-....+.. ..-.++.+..+.+++-|++.+.+ |.+-..+...+.|+++++++++.+++|+++-||.+.++ ++
T Consensus 136 -e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~ 214 (283)
T PRK08185 136 -GTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEI 214 (283)
T ss_pred -ccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHH
Confidence 000000111 11125666666666669999998 77766655567799999999999999999999997665 46
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+++.+ .|+..|=+++.+...- .+.+++++.
T Consensus 215 ~~ai~-~GI~KiNi~T~l~~a~--~~~~~~~~~ 244 (283)
T PRK08185 215 AESVQ-LGVGKINISSDMKYAF--FKKVREILS 244 (283)
T ss_pred HHHHH-CCCeEEEeChHHHHHH--HHHHHHHHH
Confidence 66764 8988877777553221 334444443
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00049 Score=71.28 Aligned_cols=87 Identities=24% Similarity=0.310 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHcCCCeEEEEe--------cccCC-------CCC---CCCchhHHHHHHHhhhccccEEEeCCcccccc
Q 045794 307 GKPVELARQYYKEGADEISFLN--------ITGFR-------DFP---LGDLPMLQVLRLTSENVFVPLTVGGGIRDFTD 368 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~D--------l~~~~-------~~~---~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d 368 (578)
.+..++|+.+.+.|++.|.+++ +.... ++. .-....++.++++.+.+++||...|||++.+|
T Consensus 166 ~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~d 245 (296)
T cd04740 166 TDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGED 245 (296)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 3788999999999999998864 31100 010 01123578899999988999999999999977
Q ss_pred CCCCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 369 ANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
+.+++.+|||-|.+++.++.+ |+++
T Consensus 246 -----------a~~~l~~GAd~V~igra~l~~-p~~~ 270 (296)
T cd04740 246 -----------ALEFLMAGASAVQVGTANFVD-PEAF 270 (296)
T ss_pred -----------HHHHHHcCCCEEEEchhhhcC-hHHH
Confidence 999999999999999999994 4443
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0023 Score=65.46 Aligned_cols=208 Identities=16% Similarity=0.250 Sum_probs=125.6
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
..+.+..++.++. .|+.+....-...+-..-..+++.++++.++||.+ .++ |..+++.+++.+++|.+
T Consensus 32 ~avi~AAe~~~sP--vIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~l-----HLD-----H~~~~e~i~~Ai~~Gft 99 (283)
T PRK07998 32 ISILNAIERSGLP--NFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSL-----HLD-----HGKTFEDVKQAVRAGFT 99 (283)
T ss_pred HHHHHHHHHhCCC--EEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEE-----ECc-----CCCCHHHHHHHHHcCCC
Confidence 3455555566665 33444321001112122345778888888999864 222 55678889999999999
Q ss_pred eeecchhhhccchhhhhccccCCchHHHH---HHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQ---ISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
-|.++-+.+.- ++ |.+..++ ++..+| +++-.--+.+. |++ . .
T Consensus 100 SVM~DgS~l~~-ee--------Ni~~T~~vve~Ah~~g-----v~VEaElG~vg------------------g~e-d--~ 144 (283)
T PRK07998 100 SVMIDGAALPF-EE--------NIAFTKEAVDFAKSYG-----VPVEAELGAIL------------------GKE-D--D 144 (283)
T ss_pred EEEEeCCCCCH-HH--------HHHHHHHHHHHHHHcC-----CEEEEEeccCC------------------Ccc-c--c
Confidence 99995443331 10 2333333 344466 22221111110 000 0 0
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC--CHHHHHHHHhhCCCcEEEecCCCCH-HHHHHHHHh
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF--DMDLIKLISDAVSIPVIASSGAGAV-EHFSDVFRK 543 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~--d~~li~~l~~~~~ipVIasGGi~s~-eDi~~l~~~ 543 (578)
...+ ...-.++.+..+-+++.|+|.+-+--=+.-|.+++| |+++++++.+.+++|++.-||-+.+ ++++++.+
T Consensus 145 --~~~~-~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~- 220 (283)
T PRK07998 145 --HVSE-ADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVN- 220 (283)
T ss_pred --cccc-ccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHH-
Confidence 0000 111347888888889999997776555667777654 7899999999999999999998887 56777774
Q ss_pred cCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 544 TNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 544 ~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.|+.++=+++.+...- ...++++|.
T Consensus 221 ~Gi~KiNi~Tel~~a~--~~~~~~~l~ 245 (283)
T PRK07998 221 YKVAKVNIASDLRKAF--ITTVGKAYV 245 (283)
T ss_pred cCCcEEEECHHHHHHH--HHHHHHHHH
Confidence 8999988888664322 344555553
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.006 Score=58.57 Aligned_cols=181 Identities=16% Similarity=0.131 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc---cccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV---FVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~---~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
..+.++++.+.+.|++.|.+. + ++++.+.+.+ .+|+.+|-|-.+. +.++..+.+.++.+
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~---g------------~~i~~~~~~~~~~~~~v~~~v~~~~~---~~~~~~~~~~a~~a 74 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVN---P------------GYVRLAADALAGSDVPVIVVVGFPTG---LTTTEVKVAEVEEA 74 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEEC---H------------HHHHHHHHHhCCCCCeEEEEecCCCC---CCcHHHHHHHHHHH
Confidence 457788888888898876543 1 3444444433 4888887555541 12234477889999
Q ss_pred HHcCcceeecchhhhccc---hhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCC
Q 045794 384 FRSGADKISIGSDAVYAA---EDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGE 460 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (578)
.++|||-+.+-.-....+ ++.+ .+.++++++..+. .+.+.+...
T Consensus 75 ~~~Gad~i~v~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~-~~pv~iy~~------------------------- 121 (201)
T cd00945 75 IDLGADEIDVVINIGSLKEGDWEEV-------LEEIAAVVEAADG-GLPLKVILE------------------------- 121 (201)
T ss_pred HHcCCCEEEEeccHHHHhCCCHHHH-------HHHHHHHHHHhcC-CceEEEEEE-------------------------
Confidence 999999988743222111 1111 2555666665311 123323211
Q ss_pred CcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHH
Q 045794 461 EYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~ 538 (578)
.++. .+.-.+.+.++.+.+.|++.|=.+.-. ...+.|++.++++.+.. ++|+++.||+.+++.+.
T Consensus 122 ---------p~~~-~~~~~~~~~~~~~~~~g~~~iK~~~~~---~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~ 188 (201)
T cd00945 122 ---------TRGL-KTADEIAKAARIAAEAGADFIKTSTGF---GGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDAL 188 (201)
T ss_pred ---------CCCC-CCHHHHHHHHHHHHHhCCCEEEeCCCC---CCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHH
Confidence 1111 001123444555678888877644311 11356899999998877 67999999999999999
Q ss_pred HHHHhcCchHHhhh
Q 045794 539 DVFRKTNASAALAA 552 (578)
Q Consensus 539 ~l~~~~G~~gv~vg 552 (578)
.++. .|++|+++|
T Consensus 189 ~~~~-~Ga~g~~~g 201 (201)
T cd00945 189 AAIE-AGADGIGTS 201 (201)
T ss_pred HHHH-hccceeecC
Confidence 9986 899998754
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00058 Score=66.78 Aligned_cols=50 Identities=32% Similarity=0.423 Sum_probs=42.3
Q ss_pred CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccc
Q 045794 339 DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAA 401 (578)
Q Consensus 339 ~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~ 401 (578)
.....+.++++.+.+ |+.+||||||.|. ++++.++|||.||+|+...+++
T Consensus 178 ~Pv~~e~v~~v~~~~--~LivGGGIrs~E~-----------A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 178 DPVPVEMVSRVLSDT--PLIVGGGIRSPEQ-----------AREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred CCcCHHHHHHhhccc--eEEEcCCcCCHHH-----------HHHHHHcCCCEEEECceeecCH
Confidence 345578888887654 9999999999865 9999999999999999998864
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00077 Score=67.51 Aligned_cols=96 Identities=24% Similarity=0.212 Sum_probs=79.1
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 476 RPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 476 ~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
.+.++.++++.+++.|+..| ++..|+++-|-+++.++.+++.+++||+.-+.|-++.++.+... .|||+|+.--++
T Consensus 59 ~~~d~~~~A~~y~~~GA~aI---SVlTe~~~F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~-~GADavLLI~~~ 134 (247)
T PRK13957 59 ADYHPVQIAKTYETLGASAI---SVLTDQSYFGGSLEDLKSVSSELKIPVLRKDFILDEIQIREARA-FGASAILLIVRI 134 (247)
T ss_pred CCCCHHHHHHHHHHCCCcEE---EEEcCCCcCCCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHH-cCCCEEEeEHhh
Confidence 36789999999999999888 67778999999999999999999999999999999999999985 999998544433
Q ss_pred ccCCCCHHHHHHHHHhCCCee
Q 045794 556 HRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 556 ~~~~~~~~~~~~~l~~~~i~v 576 (578)
.. +-.+.++.+...+-|+++
T Consensus 135 L~-~~~l~~l~~~a~~lGle~ 154 (247)
T PRK13957 135 LT-PSQIKSFLKHASSLGMDV 154 (247)
T ss_pred CC-HHHHHHHHHHHHHcCCce
Confidence 32 223566666666667654
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00054 Score=71.79 Aligned_cols=91 Identities=22% Similarity=0.244 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH-Hc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF-RS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l-~~ 386 (578)
+..++|+.+.+.|++.|++---... +......+++.++++++.+++||.+-|||++.+| +++++ ..
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh~r~~~--~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~d-----------a~~~l~~~ 214 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLHGRTRA--QGYSGEANWDIIARVKQAVRIPVIGNGDIFSPED-----------AKAMLETT 214 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEEccccc--ccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHH-----------HHHHHHhh
Confidence 5789999999999999987422221 1112356899999999999999999999999977 99999 57
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhC
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY 423 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (578)
|||-|.+|..++.+ |.+++++.+.+
T Consensus 215 gad~VmigR~~l~~------------P~l~~~~~~~~ 239 (319)
T TIGR00737 215 GCDGVMIGRGALGN------------PWLFRQIEQYL 239 (319)
T ss_pred CCCEEEEChhhhhC------------ChHHHHHHHHH
Confidence 89999999999985 35667776544
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.017 Score=57.44 Aligned_cols=190 Identities=12% Similarity=0.041 Sum_probs=119.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+..+..+++.+.|++++| +|+ |+..- .+-.--..+|+.+.+ ..|+.+===+.+.+ +-++.+.++
T Consensus 26 ~l~~el~~l~~~g~d~lH-iDVMDG~FV--PNitfGp~~i~~i~~--~~~~DvHLMv~~P~----------~~i~~~~~a 90 (228)
T PRK08091 26 KFNETLTTLSENQLRLLH-FDIADGQFS--PFFTVGAIAIKQFPT--HCFKDVHLMVRDQF----------EVAKACVAA 90 (228)
T ss_pred HHHHHHHHHHHCCCCEEE-EeccCCCcC--CccccCHHHHHHhCC--CCCEEEEeccCCHH----------HHHHHHHHh
Confidence 344566777778999999 555 44211 111222466788864 44544333344554 458889999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCC-CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN-QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
|||.|.+=.++..+.. +.++.+. +.|. -+.-++|..
T Consensus 91 Gad~It~H~Ea~~~~~-----------~~l~~Ik-~~g~~~kaGlalnP------------------------------- 127 (228)
T PRK08091 91 GADIVTLQVEQTHDLA-----------LTIEWLA-KQKTTVLIGLCLCP------------------------------- 127 (228)
T ss_pred CCCEEEEcccCcccHH-----------HHHHHHH-HCCCCceEEEEECC-------------------------------
Confidence 9999999877654321 4555654 4553 134444431
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHH---Hhh-----CCCcEEEecCCCCHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLI---SDA-----VSIPVIASSGAGAVEHF 537 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l---~~~-----~~ipVIasGGi~s~eDi 537 (578)
+ ++++.++.+.+. ++.|+++.++-....+.+.-+.++++ ++. .++.+-+=||| +.+.+
T Consensus 128 -----------~-Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti 193 (228)
T PRK08091 128 -----------E-TPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSM-TLELA 193 (228)
T ss_pred -----------C-CCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHH
Confidence 1 235555666654 89999999988766777654444443 322 14568999999 57889
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
.++.+ .||+.+++||++.+. -++++..+.|++
T Consensus 194 ~~l~~-aGaD~~V~GSalF~~-~d~~~~i~~l~~ 225 (228)
T PRK08091 194 SYLKQ-HQIDWVVSGSALFSQ-GELKTTLKEWKS 225 (228)
T ss_pred HHHHH-CCCCEEEEChhhhCC-CCHHHHHHHHHH
Confidence 99985 999999999998643 346666665554
|
|
| >TIGR01382 PfpI intracellular protease, PfpI family | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0006 Score=64.09 Aligned_cols=71 Identities=23% Similarity=0.413 Sum_probs=50.6
Q ss_pred HHHHHHHHCCCeEEEeCCc------------------cCC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCC
Q 045794 62 SVRNAIRHLGFGIKDVQTP------------------EDI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDR 121 (578)
Q Consensus 62 ~i~~~L~~~Gv~v~~v~~~------------------~dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~ 121 (578)
...+.|.+.|+++.++... +++ .++|+||+|||... .... ....+.++|+++.+.++
T Consensus 17 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~-~~~~--~~~~l~~~l~~~~~~~~ 93 (166)
T TIGR01382 17 YPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAP-EYLR--LNNKAVRLVREFVEKGK 93 (166)
T ss_pred HHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCH-HHhc--cCHHHHHHHHHHHHcCC
Confidence 4466777888887766421 112 25899999998532 1111 11246788999999999
Q ss_pred CEEEEechHHHHhh
Q 045794 122 PFLGICLGLQLLFQ 135 (578)
Q Consensus 122 PIlGIClG~QlLa~ 135 (578)
|+.+||.|.++|+.
T Consensus 94 ~i~~ic~G~~~La~ 107 (166)
T TIGR01382 94 PVAAICHGPQLLIS 107 (166)
T ss_pred EEEEEChHHHHHHh
Confidence 99999999999998
|
The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs. |
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0092 Score=58.39 Aligned_cols=190 Identities=17% Similarity=0.187 Sum_probs=123.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
...-+.++.+.+.|++++|+ |+ |+-.- .+-.--..+++++++.+..|+.+===|.+.+ .-++.+.+
T Consensus 16 ~~l~~el~~~~~agad~iH~-DVMDghFV--PNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~----------~~i~~fa~ 82 (220)
T COG0036 16 ARLGEELKALEAAGADLIHI-DVMDGHFV--PNITFGPPVVKALRKITDLPLDVHLMVENPD----------RYIEAFAK 82 (220)
T ss_pred hHHHHHHHHHHHcCCCEEEE-eccCCCcC--CCcccCHHHHHHHhhcCCCceEEEEecCCHH----------HHHHHHHH
Confidence 34557778888899999994 54 43210 1111124678888887677776544556654 46889999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||++|.+-.++-.+. .+.++.+ +..|. +.-+++.
T Consensus 83 agad~It~H~E~~~~~-----------~r~i~~I-k~~G~-kaGv~ln-------------------------------- 117 (220)
T COG0036 83 AGADIITFHAEATEHI-----------HRTIQLI-KELGV-KAGLVLN-------------------------------- 117 (220)
T ss_pred hCCCEEEEEeccCcCH-----------HHHHHHH-HHcCC-eEEEEEC--------------------------------
Confidence 9999999987754432 2455565 44563 2333332
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHH---HHHHHHhhCC----CcEEEecCCCCHHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMD---LIKLISDAVS----IPVIASSGAGAVEHFS 538 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~---li~~l~~~~~----ipVIasGGi~s~eDi~ 538 (578)
.-++++.++.+.+. ++.|+++.+.-.-..|-+--+ -++++++... +-+-+=||| +.+-+.
T Consensus 118 -----------P~Tp~~~i~~~l~~-vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~ 184 (220)
T COG0036 118 -----------PATPLEALEPVLDD-VDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGI-NLETIK 184 (220)
T ss_pred -----------CCCCHHHHHHHHhh-CCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHH
Confidence 11456666766665 899999999887666666544 4444444332 347888999 668899
Q ss_pred HHHHhcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
++.+ .|++-+++||++..+.. ..+..+.+
T Consensus 185 ~~~~-AGad~~VaGSalF~~~d-~~~~i~~~ 213 (220)
T COG0036 185 QLAA-AGADVFVAGSALFGADD-YKATIREL 213 (220)
T ss_pred HHHH-cCCCEEEEEEEEeCCcc-HHHHHHHH
Confidence 9875 99999999998876654 44433333
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.013 Score=58.41 Aligned_cols=188 Identities=15% Similarity=0.153 Sum_probs=116.1
Q ss_pred HHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 311 ELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
+-++.+.+ |++++| +|+ |+..- .+-.--.++++.+++.+.+|+.+===+.+.+ .-++.+.++||+
T Consensus 19 ~el~~l~~-g~d~lH-~DiMDG~FV--PN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~----------~~i~~~~~aGad 84 (229)
T PRK09722 19 EQIEFLNS-KADYFH-IDIMDGHFV--PNLTLSPFFVSQVKKLASKPLDVHLMVTDPQ----------DYIDQLADAGAD 84 (229)
T ss_pred HHHHHHHh-CCCEEE-EecccCccC--CCcccCHHHHHHHHhcCCCCeEEEEEecCHH----------HHHHHHHHcCCC
Confidence 34455555 999999 555 44221 1112235678888876666654433345554 358889999999
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTV 469 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (578)
.|.+-.++..+.+ ...++.+ ++.|. +.-++|..
T Consensus 85 ~it~H~Ea~~~~~----------~~~i~~I-k~~G~-kaGlalnP----------------------------------- 117 (229)
T PRK09722 85 FITLHPETINGQA----------FRLIDEI-RRAGM-KVGLVLNP----------------------------------- 117 (229)
T ss_pred EEEECccCCcchH----------HHHHHHH-HHcCC-CEEEEeCC-----------------------------------
Confidence 9999887653211 1345555 44563 45555531
Q ss_pred cccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHh---h-----CCCcEEEecCCCCHHHHHHHH
Q 045794 470 NGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISD---A-----VSIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 470 ~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~---~-----~~ipVIasGGi~s~eDi~~l~ 541 (578)
+ ++++.++.+.+. ++.|+++.+.-....+.+..+.++++++ . .++.+-+=|||. .+.+.++.
T Consensus 118 -------~-T~~~~l~~~l~~-vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~ 187 (229)
T PRK09722 118 -------E-TPVESIKYYIHL-LDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLM 187 (229)
T ss_pred -------C-CCHHHHHHHHHh-cCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHH
Confidence 1 234555555554 8999999998765666666555544433 2 135689999995 68899998
Q ss_pred HhcCchHHhhhhh-hccCCCCHHHHHHHHH
Q 045794 542 RKTNASAALAAGI-FHRKEVPIQSVKEHLY 570 (578)
Q Consensus 542 ~~~G~~gv~vgsa-~~~~~~~~~~~~~~l~ 570 (578)
+ .||+.+++||+ +....-++.+..+.|+
T Consensus 188 ~-aGad~~V~Gss~iF~~~~d~~~~i~~l~ 216 (229)
T PRK09722 188 E-AGADVFIVGTSGLFNLDEDIDEAWDIMT 216 (229)
T ss_pred H-cCCCEEEEChHHHcCCCCCHHHHHHHHH
Confidence 5 99999999954 5432333444444443
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00051 Score=69.67 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCC-CCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPL-GDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~-~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.|.+.++.+.+..-..++++-..+..+... -.....+.|+++++.++.||.+||||++.++ ++++.+.
T Consensus 151 T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~-----------~~~~~~~ 219 (256)
T TIGR00262 151 ADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQ-----------VKQAIDA 219 (256)
T ss_pred CCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHH-----------HHHHHHc
Confidence 455666666666545788887766544321 1245688899999888999999999999866 9999999
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
|||.||+||+.++
T Consensus 220 GADgvVvGSaiv~ 232 (256)
T TIGR00262 220 GADGVIVGSAIVK 232 (256)
T ss_pred CCCEEEECHHHHH
Confidence 9999999999886
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.001 Score=69.38 Aligned_cols=78 Identities=26% Similarity=0.428 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
++.|+.+.+.|+|.|.+--.++ +++.+...++.+++++.+.+++||.+.|||.+.+| +.+++.+||+
T Consensus 119 ~~~a~~a~~~GaD~Ivv~g~ea--gGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~-----------~~~al~~GA~ 185 (307)
T TIGR03151 119 VALAKRMEKAGADAVIAEGMES--GGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRG-----------MAAAFALGAE 185 (307)
T ss_pred HHHHHHHHHcCCCEEEEECccc--CCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHH-----------HHHHHHcCCC
Confidence 4678899999999887744433 34444456899999999999999999999999876 9999999999
Q ss_pred eeecchhhhcc
Q 045794 390 KISIGSDAVYA 400 (578)
Q Consensus 390 ~vv~gt~~~~~ 400 (578)
-|.+||..+..
T Consensus 186 gV~iGt~f~~t 196 (307)
T TIGR03151 186 AVQMGTRFLCA 196 (307)
T ss_pred EeecchHHhcc
Confidence 99999987764
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0005 Score=70.86 Aligned_cols=80 Identities=23% Similarity=0.322 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCcEEEEec-cCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 481 YELAKAVEDLGAGEILLNC-IDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~td-i~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
...+++++++|+ +.+.. -+--|+..|+ |.+.++.+.+..++||+..+||++++|+.++++ +|+|||+++|++...
T Consensus 208 ~~~a~~l~~~g~--~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Ame-lGadgVL~nSaIa~a 284 (326)
T PRK11840 208 PIAAKRLEDAGA--VAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAME-LGCDGVLMNTAIAEA 284 (326)
T ss_pred HHHHHHHHhcCC--EEEeeccccccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHH-cCCCEEEEcceeccC
Confidence 678999999999 55555 4556788887 899999999999999999999999999999996 999999999999865
Q ss_pred CCCHH
Q 045794 559 EVPIQ 563 (578)
Q Consensus 559 ~~~~~ 563 (578)
.-+..
T Consensus 285 ~dPv~ 289 (326)
T PRK11840 285 KNPVL 289 (326)
T ss_pred CCHHH
Confidence 55443
|
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0016 Score=69.63 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCCcEEEEecc-------CCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhh
Q 045794 480 AYELAKAVEDLGAGEILLNCI-------DCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAA 552 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi-------~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vg 552 (578)
.+++++.+++. ++.+-+..- .......|+.+++.+++++.+++|||++|++.+++++.++++..++|.|++|
T Consensus 241 ~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~g 319 (370)
T cd02929 241 GVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAA 319 (370)
T ss_pred HHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeec
Confidence 45777778765 554433210 0011124567888899999999999999999999999999986679999999
Q ss_pred hhhccCCCCHHHHH
Q 045794 553 GIFHRKEVPIQSVK 566 (578)
Q Consensus 553 sa~~~~~~~~~~~~ 566 (578)
+++...+.-+..++
T Consensus 320 R~~ladP~l~~k~~ 333 (370)
T cd02929 320 RPSIADPFLPKKIR 333 (370)
T ss_pred hHhhhCchHHHHHH
Confidence 99998887665554
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.013 Score=59.00 Aligned_cols=189 Identities=10% Similarity=0.012 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+--+.++.+++.|++++| +|+ |+..- .+-.--.++++.+.+ .+|+.+===+.+.+ .-++.+.++
T Consensus 33 ~L~~el~~l~~~g~d~lH-iDVMDG~FV--PNitfGp~~i~~i~~--~~p~DvHLMV~~P~----------~~i~~~~~a 97 (254)
T PRK14057 33 ALHRYLQQLEALNQPLLH-LDLMDGQFC--PQFTVGPWAVGQLPQ--TFIKDVHLMVADQW----------TAAQACVKA 97 (254)
T ss_pred HHHHHHHHHHHCCCCEEE-EeccCCccC--CccccCHHHHHHhcc--CCCeeEEeeeCCHH----------HHHHHHHHh
Confidence 334556777778999999 565 44211 111222467788865 35543322344554 358889999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC--------eEEEEEeccccccCCCCccccceeeeccCCCC
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ--------AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPN 458 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (578)
|||.|.+=.++..+.. ..++.+. ..|.+ +.-++|..
T Consensus 98 Gad~It~H~Ea~~~~~-----------~~l~~Ir-~~G~k~~~~~~~~kaGlAlnP------------------------ 141 (254)
T PRK14057 98 GAHCITLQAEGDIHLH-----------HTLSWLG-QQTVPVIGGEMPVIRGISLCP------------------------ 141 (254)
T ss_pred CCCEEEEeeccccCHH-----------HHHHHHH-HcCCCcccccccceeEEEECC------------------------
Confidence 9999999877654321 4455554 34532 23333321
Q ss_pred CCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHh---h---C--CCcEEEecC
Q 045794 459 GEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISD---A---V--SIPVIASSG 530 (578)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~---~---~--~ipVIasGG 530 (578)
+ ++++.++.+.+. ++.|+++.++-.-..+.+..+.++++++ . - ++.+-+=||
T Consensus 142 ------------------~-Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGG 201 (254)
T PRK14057 142 ------------------A-TPLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGS 201 (254)
T ss_pred ------------------C-CCHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECC
Confidence 1 345666666665 8999999998876667666554444432 2 1 356899999
Q ss_pred CCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 531 AGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 531 i~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
| +.+.+.++.+ .|++.+++||++... -++++..+.++
T Consensus 202 I-~~~ti~~l~~-aGad~~V~GSalF~~-~d~~~~i~~l~ 238 (254)
T PRK14057 202 L-TQDQLPSLIA-QGIDRVVSGSALFRD-DRLVENTRSWR 238 (254)
T ss_pred C-CHHHHHHHHH-CCCCEEEEChHhhCC-CCHHHHHHHHH
Confidence 9 5688999885 999999999998753 34444444443
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0052 Score=65.26 Aligned_cols=75 Identities=24% Similarity=0.285 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCC-------C-------------CC-CHHHHHHHHhh-CCCcEEEecCCCCHHHHH
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQG-------K-------------GF-DMDLIKLISDA-VSIPVIASSGAGAVEHFS 538 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~-------~-------------G~-d~~li~~l~~~-~~ipVIasGGi~s~eDi~ 538 (578)
.+.++.+.+.|++.|.+... .|+. + |. -.+.+.++++. .++|||++|||++..|+.
T Consensus 200 ~~~a~~l~~~Gvd~I~Vsg~--GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~ 277 (352)
T PRK05437 200 KETAKRLADAGVKAIDVAGA--GGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIA 277 (352)
T ss_pred HHHHHHHHHcCCCEEEECCC--CCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHH
Confidence 68899999999999998664 2321 1 21 12466667776 489999999999999999
Q ss_pred HHHHhcCchHHhhhhhhccC
Q 045794 539 DVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~ 558 (578)
+++. .||++|.+|+++...
T Consensus 278 k~l~-~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 278 KALA-LGADAVGMAGPFLKA 296 (352)
T ss_pred HHHH-cCCCEEEEhHHHHHH
Confidence 9996 899999999987654
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00064 Score=70.56 Aligned_cols=87 Identities=25% Similarity=0.346 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEe--------cccC-------CCCCCC---CchhHHHHHHHhhhccccEEEeCCcccccc
Q 045794 307 GKPVELARQYYKEGADEISFLN--------ITGF-------RDFPLG---DLPMLQVLRLTSENVFVPLTVGGGIRDFTD 368 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~D--------l~~~-------~~~~~~---~~~~~~~i~~i~~~~~~pi~~gGGir~~~d 368 (578)
.+..++|+.+.+.|++.|++.+ +... .++..+ ....++.++++++.+++||..-|||++.+|
T Consensus 169 ~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~d 248 (300)
T TIGR01037 169 TDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFED 248 (300)
T ss_pred hhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHH
Confidence 4678999999999999999853 2110 011101 112357889999989999999999999977
Q ss_pred CCCCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 369 ANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
+.+++.+|||-|.+|+.++.++ +++
T Consensus 249 -----------a~~~l~~GAd~V~igr~~l~~p-~~~ 273 (300)
T TIGR01037 249 -----------ALEFLMAGASAVQVGTAVYYRG-FAF 273 (300)
T ss_pred -----------HHHHHHcCCCceeecHHHhcCc-hHH
Confidence 9999999999999999999864 443
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00058 Score=71.68 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCC------CCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFP------LGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~------~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
.+.+++++.+.+.|++.|++..-....... .....+++.++++++.+++||.+.|||++.++ +
T Consensus 228 ~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~-----------a 296 (327)
T cd02803 228 EEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEV-----------A 296 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHH-----------H
Confidence 467889999999999999986554321110 11245678899999989999999999999876 9
Q ss_pred HHHHHc-Ccceeecchhhhcc
Q 045794 381 SEYFRS-GADKISIGSDAVYA 400 (578)
Q Consensus 381 ~~~l~~-Ga~~vv~gt~~~~~ 400 (578)
+++++. |||.|.+|+.++.+
T Consensus 297 ~~~l~~g~aD~V~igR~~lad 317 (327)
T cd02803 297 EEILAEGKADLVALGRALLAD 317 (327)
T ss_pred HHHHHCCCCCeeeecHHHHhC
Confidence 999998 79999999999985
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0016 Score=63.50 Aligned_cols=179 Identities=15% Similarity=0.195 Sum_probs=113.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+..+.++.+.+.|++++| +|+ |+..- .+-.-..+.++.|++.+.+|+.+===+.+.++ -++.+.+
T Consensus 12 ~~l~~~i~~l~~~g~d~lH-iDiMDg~fv--pn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~----------~i~~~~~ 78 (201)
T PF00834_consen 12 LNLEEEIKRLEEAGADWLH-IDIMDGHFV--PNLTFGPDIIKAIRKITDLPLDVHLMVENPER----------YIEEFAE 78 (201)
T ss_dssp GGHHHHHHHHHHTT-SEEE-EEEEBSSSS--SSB-B-HHHHHHHHTTSSSEEEEEEESSSGGG----------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEE-EeecccccC--CcccCCHHHHHHHhhcCCCcEEEEeeeccHHH----------HHHHHHh
Confidence 3556778888889999999 455 44321 12234578899998888777766445556654 5899999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|++.|.+=.++..+.. ++++.+.+ .|. +.-++|....
T Consensus 79 ~g~~~i~~H~E~~~~~~-----------~~i~~ik~-~g~-k~GialnP~T----------------------------- 116 (201)
T PF00834_consen 79 AGADYITFHAEATEDPK-----------ETIKYIKE-AGI-KAGIALNPET----------------------------- 116 (201)
T ss_dssp HT-SEEEEEGGGTTTHH-----------HHHHHHHH-TTS-EEEEEE-TTS-----------------------------
T ss_pred cCCCEEEEcccchhCHH-----------HHHHHHHH-hCC-CEEEEEECCC-----------------------------
Confidence 99999999877666432 45666544 563 5566665321
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHH---HHHhh-----CCCcEEEecCCCCHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIK---LISDA-----VSIPVIASSGAGAVEHF 537 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~---~l~~~-----~~ipVIasGGi~s~eDi 537 (578)
+++.++.+.+ -++.|+++.+.-....+.+.-+.++ ++++. .++.+.+=||| +.+.+
T Consensus 117 --------------~~~~~~~~l~-~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI-~~~~~ 180 (201)
T PF00834_consen 117 --------------PVEELEPYLD-QVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGI-NEENI 180 (201)
T ss_dssp ---------------GGGGTTTGC-CSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSE-STTTH
T ss_pred --------------CchHHHHHhh-hcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCC-CHHHH
Confidence 2223333334 3899999999875555555433333 33332 24789999999 55889
Q ss_pred HHHHHhcCchHHhhhhhhcc
Q 045794 538 SDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~ 557 (578)
.++.+ .|++.+++||++..
T Consensus 181 ~~~~~-aGad~~V~Gs~iF~ 199 (201)
T PF00834_consen 181 KQLVE-AGADIFVAGSAIFK 199 (201)
T ss_dssp HHHHH-HT--EEEESHHHHT
T ss_pred HHHHH-cCCCEEEECHHHhC
Confidence 99985 99999999998864
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00083 Score=69.77 Aligned_cols=87 Identities=24% Similarity=0.312 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEeccc-C--------------CCCC---CCCchhHHHHHHHhhhccccEEEeCCcccccc
Q 045794 307 GKPVELARQYYKEGADEISFLNITG-F--------------RDFP---LGDLPMLQVLRLTSENVFVPLTVGGGIRDFTD 368 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~-~--------------~~~~---~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d 368 (578)
.+..++|+.+.+.|++.|++++-.. . .++. ......++.++++++.+++||..-|||++.+|
T Consensus 169 ~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 169 TDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 3788999999999999998864211 0 0000 01123578899999989999999999999977
Q ss_pred CCCCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 369 ANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
+.+++.+|||-|.+++.++.+ |+++
T Consensus 249 -----------a~~~l~aGAd~V~igr~ll~~-P~~~ 273 (301)
T PRK07259 249 -----------AIEFIMAGASAVQVGTANFYD-PYAF 273 (301)
T ss_pred -----------HHHHHHcCCCceeEcHHHhcC-cHHH
Confidence 999999999999999999984 4443
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00048 Score=72.38 Aligned_cols=76 Identities=24% Similarity=0.302 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCC-------C---------------CCC-HHHHHHHHhhC-CCcEEEecCCCCHHH
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQG-------K---------------GFD-MDLIKLISDAV-SIPVIASSGAGAVEH 536 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~-------~---------------G~d-~~li~~l~~~~-~ipVIasGGi~s~eD 536 (578)
.+.++.+++.|++.|.+... .|+. . |.. .+.+.++++.+ ++|||++|||++..|
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~--GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~d 269 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGA--GGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLD 269 (326)
T ss_pred HHHHHHHHHcCCCEEEECCC--CCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHH
Confidence 68899999999999998763 2211 1 111 25667777766 899999999999999
Q ss_pred HHHHHHhcCchHHhhhhhhccCC
Q 045794 537 FSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 537 i~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
+.+++. .||++|.+|+++....
T Consensus 270 v~kal~-lGAd~V~i~~~~L~~~ 291 (326)
T cd02811 270 IAKALA-LGADLVGMAGPFLKAA 291 (326)
T ss_pred HHHHHH-hCCCEEEEcHHHHHHH
Confidence 999996 8999999999875543
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0066 Score=62.43 Aligned_cols=212 Identities=16% Similarity=0.201 Sum_probs=121.8
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
...+.+.-++.+++-|.-+--.... -..+...-...++.++++.+ +||.+ ..+ |..+++.+++.++.|
T Consensus 29 ~~avi~aAe~~~~PvIl~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~vpv~l-----hlD-----H~~~~e~i~~ai~~G 97 (282)
T TIGR01859 29 TQAILEAAEEENSPVIIQVSEGAIK-YMGGYKMAVAMVKTLIERMSIVPVAL-----HLD-----HGSSYESCIKAIKAG 97 (282)
T ss_pred HHHHHHHHHHhCCCEEEEcCcchhh-ccCcHHHHHHHHHHHHHHCCCCeEEE-----ECC-----CCCCHHHHHHHHHcC
Confidence 3345555556666644433222221 00112345567788888888 89864 222 344577899999999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
++.|.+....+.. .+.++ ...-+.+++..||- .|-.-+..-. |++ .
T Consensus 98 f~sVmid~s~l~~-~eni~-----~t~~v~~~a~~~gv-~Ve~ElG~~g----------------------g~e----d- 143 (282)
T TIGR01859 98 FSSVMIDGSHLPF-EENLA-----LTKKVVEIAHAKGV-SVEAELGTLG----------------------GIE----D- 143 (282)
T ss_pred CCEEEECCCCCCH-HHHHH-----HHHHHHHHHHHcCC-EEEEeeCCCc----------------------Ccc----c-
Confidence 9999995544432 22221 01223344466762 2333232111 100 0
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC---CCCCHHHHHHHHhhCCCcEEEec--CCCCHHHHHHHHH
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG---KGFDMDLIKLISDAVSIPVIASS--GAGAVEHFSDVFR 542 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~---~G~d~~li~~l~~~~~ipVIasG--Gi~s~eDi~~l~~ 542 (578)
.+.| ...+--++.+..+..++.|++.+.+--=+.-|+. ...+++.++++++.+++|+++-| |+ +.++++++.+
T Consensus 144 ~~~g-~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi-~~e~i~~~i~ 221 (282)
T TIGR01859 144 GVDE-KEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGI-PEEQIKKAIK 221 (282)
T ss_pred cccc-cccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHH
Confidence 0011 1111225666555555689998874211111222 34699999999999999999999 88 5588999986
Q ss_pred hcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 543 KTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.|++++-+++.+...- ...+++++.
T Consensus 222 -~Gi~kiNv~T~l~~a~--~~~~~~~~~ 246 (282)
T TIGR01859 222 -LGIAKINIDTDCRIAF--TAAIRKVLT 246 (282)
T ss_pred -cCCCEEEECcHHHHHH--HHHHHHHHH
Confidence 8999999999775322 445555554
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0011 Score=70.36 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC---CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF---DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~---d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
.+-++.+.+.|++.|++.+.. |+..+. -++.+.++.+.+ .+|||+.|||++..|+.+++. +||++|++|+++
T Consensus 234 ~~dA~~a~~~GvD~I~vsn~G--Gr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALa-lGA~aV~vGr~~ 310 (364)
T PLN02535 234 REDAIKAVEVGVAGIIVSNHG--ARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALA-LGAQAVLVGRPV 310 (364)
T ss_pred HHHHHHHHhcCCCEEEEeCCC--cCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHH-cCCCEEEECHHH
Confidence 355889999999999987643 333222 257777777665 699999999999999999995 999999999999
Q ss_pred ccC
Q 045794 556 HRK 558 (578)
Q Consensus 556 ~~~ 558 (578)
..+
T Consensus 311 l~~ 313 (364)
T PLN02535 311 IYG 313 (364)
T ss_pred Hhh
Confidence 765
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.003 Score=61.32 Aligned_cols=162 Identities=19% Similarity=0.278 Sum_probs=105.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++++.+.+.|.+-+=|. ++. ..-++.|++++++.. -+.+| |.|.+.++ +++..+
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT-~~t--------~~a~~~I~~l~~~~p-~~~vGAGTV~~~e~-----------a~~a~~ 78 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEIT-LRT--------PNALEAIEALRKEFP-DLLVGAGTVLTAEQ-----------AEAAIA 78 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEE-TTS--------TTHHHHHHHHHHHHT-TSEEEEES--SHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEe-cCC--------ccHHHHHHHHHHHCC-CCeeEEEeccCHHH-----------HHHHHH
Confidence 578899999999998754433 222 224788999988775 36677 77888765 999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.++-=. + |+++++.. .+++- -.
T Consensus 79 aGA~FivSP~--~-------------~~~v~~~~-~~~~i-~~------------------------------------- 104 (196)
T PF01081_consen 79 AGAQFIVSPG--F-------------DPEVIEYA-REYGI-PY------------------------------------- 104 (196)
T ss_dssp HT-SEEEESS-----------------HHHHHHH-HHHTS-EE-------------------------------------
T ss_pred cCCCEEECCC--C-------------CHHHHHHH-HHcCC-cc-------------------------------------
Confidence 9999776431 2 23555554 45541 11
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
+.| -.++-|+ ..+.++|++.+=+...+.-| | ...++.++.-. ++|+++.|||. .+.+.+.++ .
T Consensus 105 ---iPG-----~~TptEi-~~A~~~G~~~vK~FPA~~~G---G--~~~ik~l~~p~p~~~~~ptGGV~-~~N~~~~l~-a 168 (196)
T PF01081_consen 105 ---IPG-----VMTPTEI-MQALEAGADIVKLFPAGALG---G--PSYIKALRGPFPDLPFMPTGGVN-PDNLAEYLK-A 168 (196)
T ss_dssp ---EEE-----ESSHHHH-HHHHHTT-SEEEETTTTTTT---H--HHHHHHHHTTTTT-EEEEBSS---TTTHHHHHT-S
T ss_pred ---cCC-----cCCHHHH-HHHHHCCCCEEEEecchhcC---c--HHHHHHHhccCCCCeEEEcCCCC-HHHHHHHHh-C
Confidence 111 1234444 45568999999999876543 2 36788887755 69999999995 589999995 9
Q ss_pred CchHHhhhhhhccCC
Q 045794 545 NASAALAAGIFHRKE 559 (578)
Q Consensus 545 G~~gv~vgsa~~~~~ 559 (578)
|+.++.+||.+....
T Consensus 169 g~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 169 GAVAVGGGSWLFPKD 183 (196)
T ss_dssp TTBSEEEESGGGSHH
T ss_pred CCEEEEECchhcCHH
Confidence 999999999887543
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0021 Score=64.05 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCC--chhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGD--LPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~--~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
.+.++.+.+.|++.|++..... +++... ...++.++++++.+++|+.++|||++.+| ++++++.|
T Consensus 112 ~~~~~~~~~~gad~i~~~~~~~--~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~-----------v~~~l~~G 178 (236)
T cd04730 112 VEEARKAEAAGADALVAQGAEA--GGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRG-----------IAAALALG 178 (236)
T ss_pred HHHHHHHHHcCCCEEEEeCcCC--CCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHH-----------HHHHHHcC
Confidence 3667778889999888765421 222221 24578899998888999999999999866 99999999
Q ss_pred cceeecchhhhccc
Q 045794 388 ADKISIGSDAVYAA 401 (578)
Q Consensus 388 a~~vv~gt~~~~~~ 401 (578)
|+.|++||..+...
T Consensus 179 adgV~vgS~l~~~~ 192 (236)
T cd04730 179 ADGVQMGTRFLATE 192 (236)
T ss_pred CcEEEEchhhhcCc
Confidence 99999999988753
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00095 Score=63.61 Aligned_cols=77 Identities=25% Similarity=0.358 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
+|=+..-.+.|+|.|- .=|.+......+.++++++++++++. .+||..-|+|.+.++ +++.+++||.
T Consensus 102 ~ee~~~A~~~G~D~I~-TTLsGYT~~t~~~~pD~~lv~~l~~~-~~pvIaEGri~tpe~-----------a~~al~~GA~ 168 (192)
T PF04131_consen 102 LEEAINAAELGFDIIG-TTLSGYTPYTKGDGPDFELVRELVQA-DVPVIAEGRIHTPEQ-----------AAKALELGAH 168 (192)
T ss_dssp HHHHHHHHHTT-SEEE--TTTTSSTTSTTSSHHHHHHHHHHHT-TSEEEEESS--SHHH-----------HHHHHHTT-S
T ss_pred HHHHHHHHHcCCCEEE-cccccCCCCCCCCCCCHHHHHHHHhC-CCcEeecCCCCCHHH-----------HHHHHhcCCe
Confidence 3556677789999665 45888655444578999999999986 899999999999976 9999999999
Q ss_pred eeecchhhhc
Q 045794 390 KISIGSDAVY 399 (578)
Q Consensus 390 ~vv~gt~~~~ 399 (578)
-|++||+--.
T Consensus 169 aVVVGsAITr 178 (192)
T PF04131_consen 169 AVVVGSAITR 178 (192)
T ss_dssp EEEE-HHHH-
T ss_pred EEEECcccCC
Confidence 9999997554
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0012 Score=65.55 Aligned_cols=77 Identities=26% Similarity=0.310 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.|| ..|+++.+.|++-+.-. .+=+. . ..-.|.+.|+.+.+..++||.++|||.+.+| +.+.++
T Consensus 132 dd~-~~ar~l~~~G~~~vmPlg~pIGs---g-~Gi~~~~~I~~I~e~~~vpVI~egGI~tped-----------a~~Ame 195 (248)
T cd04728 132 DDP-VLAKRLEDAGCAAVMPLGSPIGS---G-QGLLNPYNLRIIIERADVPVIVDAGIGTPSD-----------AAQAME 195 (248)
T ss_pred CCH-HHHHHHHHcCCCEeCCCCcCCCC---C-CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHH-----------HHHHHH
Confidence 455 78899999999987430 11121 1 1133688889998888899999999999987 999999
Q ss_pred cCcceeecchhhhc
Q 045794 386 SGADKISIGSDAVY 399 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~ 399 (578)
+||+.|++||+..+
T Consensus 196 lGAdgVlV~SAIt~ 209 (248)
T cd04728 196 LGADAVLLNTAIAK 209 (248)
T ss_pred cCCCEEEEChHhcC
Confidence 99999999998876
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0011 Score=65.66 Aligned_cols=76 Identities=21% Similarity=0.170 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCCeEEEE--ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 311 ELARQYYKEGADEISFL--NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~--Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
+.++...+.|++.+.+- ++.+... .....+...++++.+.+++|+.++|||++.+| ++++++.||
T Consensus 130 ee~~~a~~~G~d~i~~~~~g~t~~~~--~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~-----------~~~~l~~Ga 196 (221)
T PRK01130 130 EEGLAAQKLGFDFIGTTLSGYTEETK--KPEEPDFALLKELLKAVGCPVIAEGRINTPEQ-----------AKKALELGA 196 (221)
T ss_pred HHHHHHHHcCCCEEEcCCceeecCCC--CCCCcCHHHHHHHHHhCCCCEEEECCCCCHHH-----------HHHHHHCCC
Confidence 34577888999977531 2322111 12245688999999988999999999999876 999999999
Q ss_pred ceeecchhhhc
Q 045794 389 DKISIGSDAVY 399 (578)
Q Consensus 389 ~~vv~gt~~~~ 399 (578)
+.|++||+..+
T Consensus 197 dgV~iGsai~~ 207 (221)
T PRK01130 197 HAVVVGGAITR 207 (221)
T ss_pred CEEEEchHhcC
Confidence 99999998776
|
|
| >cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00062 Score=65.13 Aligned_cols=65 Identities=18% Similarity=0.299 Sum_probs=44.0
Q ss_pred HHCCCeEEEeCCccCC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 68 RHLGFGIKDVQTPEDI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 68 ~~~Gv~v~~v~~~~dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
...|..+..-...+++ ..||+|++|||..... . .....+.++++++.+.++||.|||.|.++|+.
T Consensus 57 ~~~g~~i~~~~~~~~~~~~~~D~liv~GG~~~~~-~--~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~ 123 (180)
T cd03169 57 EKPGHRFAVTADFDEVDPDDYDALVIPGGRAPEY-L--RLDEKVLAIVRHFAEANKPVAAICHGPQILAA 123 (180)
T ss_pred ccCCcEEeccCCcccCCHhHCCEEEEcCCCChhh-h--ccCHHHHHHHHHHHHcCCEEEEECcHHHHHHH
Confidence 3445554432222332 3689999999853221 1 11124678899999999999999999999998
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0049 Score=62.92 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCC--CHHHHHHHH----HhcCchHHhhhhh
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAG--AVEHFSDVF----RKTNASAALAAGI 554 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~--s~eDi~~l~----~~~G~~gv~vgsa 554 (578)
...++.+.+.|++.|=. + .. .+.++++++.+...+||+++|||+ +.+++.+.. + .|++|+++|++
T Consensus 163 ~~a~~~a~e~GAD~vKt-~------~~-~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~-aGA~Gis~gr~ 233 (267)
T PRK07226 163 AHAARVAAELGADIVKT-N------YT-GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAME-AGAAGVAVGRN 233 (267)
T ss_pred HHHHHHHHHHCCCEEee-C------CC-CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHH-cCCcEEehhhh
Confidence 45568888999998832 2 11 268999999887889999999999 777766664 4 89999999999
Q ss_pred hccCCC
Q 045794 555 FHRKEV 560 (578)
Q Consensus 555 ~~~~~~ 560 (578)
+.+.+.
T Consensus 234 i~~~~~ 239 (267)
T PRK07226 234 VFQHED 239 (267)
T ss_pred hhcCCC
Confidence 987765
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0034 Score=63.76 Aligned_cols=78 Identities=14% Similarity=0.222 Sum_probs=59.2
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCC--C----HHHHHHHHHhcCchHHhhhhhh
Q 045794 482 ELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAG--A----VEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 482 e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~--s----~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
..++.+.+.|++.|-+. . ..+++.++++.+.+.+||+++|||+ + .+.+.++.+ .|++|+++++++
T Consensus 160 ~~~~~a~~~GADyikt~-------~-~~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~-aGa~Gia~g~~i 230 (258)
T TIGR01949 160 HAARLGAELGADIVKTP-------Y-TGDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAME-AGAAGVAVGRNI 230 (258)
T ss_pred HHHHHHHHHCCCEEecc-------C-CCCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHH-cCCcEEehhhHh
Confidence 34678889999988742 1 1378999999988899999999999 5 555666665 999999999999
Q ss_pred ccCCCCHHHHHHHH
Q 045794 556 HRKEVPIQSVKEHL 569 (578)
Q Consensus 556 ~~~~~~~~~~~~~l 569 (578)
.+.+- +.+..+.|
T Consensus 231 ~~~~d-p~~~~~~l 243 (258)
T TIGR01949 231 FQHDD-PVGITKAV 243 (258)
T ss_pred hcCCC-HHHHHHHH
Confidence 87765 44444333
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00094 Score=69.36 Aligned_cols=93 Identities=20% Similarity=0.296 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEE---------ecccCC-----------CCCCC---CchhHHHHHHHhhhc--cccEEEeC
Q 045794 307 GKPVELARQYYKEGADEISFL---------NITGFR-----------DFPLG---DLPMLQVLRLTSENV--FVPLTVGG 361 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~---------Dl~~~~-----------~~~~~---~~~~~~~i~~i~~~~--~~pi~~gG 361 (578)
.+..++|+.+.+.|++.|.++ |++..+ ++..+ ....++.|+++++.+ .+||..-|
T Consensus 180 ~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~G 259 (299)
T cd02940 180 TDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIG 259 (299)
T ss_pred hhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEEC
Confidence 478899999999999999864 332210 11111 123489999999999 89999999
Q ss_pred CccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 362 GIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 362 Gir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
||++.+| +.+++.+||+-|-++|+++.+. |+.+.++.+
T Consensus 260 GI~~~~d-----------a~~~l~aGA~~V~i~ta~~~~g-----------~~~~~~i~~ 297 (299)
T cd02940 260 GIESWED-----------AAEFLLLGASVVQVCTAVMNQG-----------FTIVDDMCT 297 (299)
T ss_pred CCCCHHH-----------HHHHHHcCCChheEceeecccC-----------CcHHHHHhh
Confidence 9999987 8889999999999999999853 466677654
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0014 Score=66.84 Aligned_cols=97 Identities=12% Similarity=0.160 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCC---CCCCHHHHHHHHhhCCCcEEEecCCCCHHHH-----------HHHHHhc
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQG---KGFDMDLIKLISDAVSIPVIASSGAGAVEHF-----------SDVFRKT 544 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~---~G~d~~li~~l~~~~~ipVIasGGi~s~eDi-----------~~l~~~~ 544 (578)
.++++++++.+.|++++.+.+|+.=-.. .-|-++.+++.++.+.+|+.++|||++..|. ...+ ..
T Consensus 270 KPV~Laq~Yyq~GADEv~FLNITsFRdcPl~D~PMlqVL~qaaktVFVPLTVGGGIrD~~D~dGt~~palEVA~~YF-RS 348 (541)
T KOG0623|consen 270 KPVDLAQQYYQDGADEVSFLNITSFRDCPLGDLPMLQVLRQAAKTVFVPLTVGGGIRDFTDADGTYYPALEVAAEYF-RS 348 (541)
T ss_pred ChHHHHHHHHhcCCceeEEEeeccccCCCcccChHHHHHHHhhceEEEEEeecCcccccccCCCcCchhHHHHHHHH-hc
Confidence 4899999999999999999998642222 2234566677777778999999999987663 2334 37
Q ss_pred CchHHhhhhhh-c------------cCCCCHHHHHHHHHhCCCee
Q 045794 545 NASAALAAGIF-H------------RKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 545 G~~gv~vgsa~-~------------~~~~~~~~~~~~l~~~~i~v 576 (578)
|+|.|.|||-. + .|.-+++.+.+....|.+.+
T Consensus 349 GADKvSIGsDAVyAAEkyye~G~k~~Gks~iEtISkaYGnQAVVi 393 (541)
T KOG0623|consen 349 GADKVSIGSDAVYAAEKYYESGVKGTGKSSIETISKAYGNQAVVI 393 (541)
T ss_pred CCceeeechhHHHHHHHHHHhccCCCCcChHHHHHHHhCCeeEEE
Confidence 99999988822 2 34556777777766665533
|
|
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0033 Score=65.73 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=105.0
Q ss_pred HHHHHHHHcCcceee--cchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccC
Q 045794 378 EVASEYFRSGADKIS--IGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDL 455 (578)
Q Consensus 378 ~~~~~~l~~Ga~~vv--~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~ 455 (578)
+.++++.+.|.+.+= +|...-. ..+.++.+.+.+| .+.+++|+..+
T Consensus 140 ~~~~~~~~~Gf~~iKik~g~~~~~------------d~~~v~~lr~~~g--~~~l~vD~n~~------------------ 187 (316)
T cd03319 140 AAAKKAAKRGFPLLKIKLGGDLED------------DIERIRAIREAAP--DARLRVDANQG------------------ 187 (316)
T ss_pred HHHHHHHHcCCCEEEEEeCCChhh------------HHHHHHHHHHhCC--CCeEEEeCCCC------------------
Confidence 567778888875443 3432111 1377889989898 46788996432
Q ss_pred CCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHH
Q 045794 456 GPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVE 535 (578)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~e 535 (578)
|.. -+..++++.++++++..+ +.-+...|++.++++++.+++||++++.+.+.+
T Consensus 188 ----------------~~~---~~A~~~~~~l~~~~l~~i-------EeP~~~~d~~~~~~L~~~~~ipIa~~E~~~~~~ 241 (316)
T cd03319 188 ----------------WTP---EEAVELLRELAELGVELI-------EQPVPAGDDDGLAYLRDKSPLPIMADESCFSAA 241 (316)
T ss_pred ----------------cCH---HHHHHHHHHHHhcCCCEE-------ECCCCCCCHHHHHHHHhcCCCCEEEeCCCCCHH
Confidence 322 146788999999887655 334455689999999999999999999999999
Q ss_pred HHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 536 HFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 536 Di~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+++++++..+++.+.+--....|.....++.+.+...|++|
T Consensus 242 ~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~ 282 (316)
T cd03319 242 DAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKV 282 (316)
T ss_pred HHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCE
Confidence 99999986778888766555566667788888999999876
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0016 Score=69.32 Aligned_cols=75 Identities=20% Similarity=0.161 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC--CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhh
Q 045794 478 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGF--DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 478 ~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~--d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa 554 (578)
.+..++++.+.+.|++.|.++..+++..+.+. |+..+.++.+..++|||+ |+|.+.++.+++.+ +|||+|++|..
T Consensus 141 ~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~~-aGAD~V~VG~G 217 (368)
T PRK08649 141 QRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV-GGCVTYTTALHLMR-TGAAGVLVGIG 217 (368)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHH-cCCCEEEECCC
Confidence 35789999999999999999998888766543 688788887778999999 88999999999996 99999999854
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00078 Score=71.02 Aligned_cols=75 Identities=24% Similarity=0.239 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCC----------C----C--CCH-----HHHHHHHh-hCCCcEEEecCCCCHHHH
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQG----------K----G--FDM-----DLIKLISD-AVSIPVIASSGAGAVEHF 537 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~----------~----G--~d~-----~li~~l~~-~~~ipVIasGGi~s~eDi 537 (578)
..+.++.+++.|++.|.+... .|+. . . .|| +.+.++++ ..++|||++|||++.+|+
T Consensus 192 ~~~~a~~L~~aGvd~I~Vsg~--gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di 269 (333)
T TIGR02151 192 SKEVAKLLADAGVSAIDVAGA--GGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDV 269 (333)
T ss_pred CHHHHHHHHHcCCCEEEECCC--CCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHH
Confidence 368999999999999998763 2321 1 0 122 35555555 458999999999999999
Q ss_pred HHHHHhcCchHHhhhhhhcc
Q 045794 538 SDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+++. .||++|++|+++..
T Consensus 270 ~kaLa-lGAd~V~igr~~L~ 288 (333)
T TIGR02151 270 AKAIA-LGADAVGMARPFLK 288 (333)
T ss_pred HHHHH-hCCCeehhhHHHHH
Confidence 99996 89999999998873
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0013 Score=65.23 Aligned_cols=76 Identities=26% Similarity=0.309 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHcCCCeEEE--EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISF--LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~--~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.|| ..|+++.+.|++-|.- --+ +. . ..-.|.+.|+.+.+..++||.++|||.+.+| +.+.+
T Consensus 132 ~d~-~~ak~l~~~G~~~vmPlg~pI-Gs---g-~gi~~~~~i~~i~e~~~vpVIveaGI~tped-----------a~~Am 194 (250)
T PRK00208 132 DDP-VLAKRLEEAGCAAVMPLGAPI-GS---G-LGLLNPYNLRIIIEQADVPVIVDAGIGTPSD-----------AAQAM 194 (250)
T ss_pred CCH-HHHHHHHHcCCCEeCCCCcCC-CC---C-CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHH-----------HHHHH
Confidence 455 7788899999998743 122 21 1 1133577788888878899999999999987 99999
Q ss_pred HcCcceeecchhhhc
Q 045794 385 RSGADKISIGSDAVY 399 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~ 399 (578)
++|||.|++||+..+
T Consensus 195 elGAdgVlV~SAItk 209 (250)
T PRK00208 195 ELGADAVLLNTAIAV 209 (250)
T ss_pred HcCCCEEEEChHhhC
Confidence 999999999998886
|
|
| >cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0018 Score=60.75 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=50.3
Q ss_pred HHHHHHHHCCCeEEEeCCc--------------------cCC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhC
Q 045794 62 SVRNAIRHLGFGIKDVQTP--------------------EDI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEK 119 (578)
Q Consensus 62 ~i~~~L~~~Gv~v~~v~~~--------------------~dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~ 119 (578)
.+.+.|+..|+++.++... ++. .++|+|++|||... ..+. ....+.++|+++.+.
T Consensus 17 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~-~~~~--~~~~~~~~l~~~~~~ 93 (165)
T cd03134 17 YPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNP-DKLR--RDPDAVAFVRAFAEA 93 (165)
T ss_pred HHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCCh-hhhc--cCHHHHHHHHHHHHc
Confidence 3456677778777766422 111 25899999998632 1111 122567899999999
Q ss_pred CCCEEEEechHHHHhh
Q 045794 120 DRPFLGICLGLQLLFQ 135 (578)
Q Consensus 120 g~PIlGIClG~QlLa~ 135 (578)
++||.+||.|.++|+.
T Consensus 94 ~~~i~~ic~G~~~La~ 109 (165)
T cd03134 94 GKPVAAICHGPWVLIS 109 (165)
T ss_pred CCeEEEEchHHHHHHh
Confidence 9999999999999998
|
A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0011 Score=66.73 Aligned_cols=81 Identities=21% Similarity=0.241 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..|.+..+.+.+...+.++++-..+..++... .....+.|+++++..++||.+||||++.++ ++++.+
T Consensus 139 ~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~-----------~~~~~~ 207 (242)
T cd04724 139 TTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQ-----------AAEVAK 207 (242)
T ss_pred CCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHH-----------HHHHHc
Confidence 35677788888767788999888875543321 234568889998888999999999999865 999999
Q ss_pred cCcceeecchhhhc
Q 045794 386 SGADKISIGSDAVY 399 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~ 399 (578)
+ ||.+|+||+.++
T Consensus 208 ~-ADgvVvGSaiv~ 220 (242)
T cd04724 208 Y-ADGVIVGSALVK 220 (242)
T ss_pred c-CCEEEECHHHHH
Confidence 9 999999998876
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0024 Score=58.41 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=60.2
Q ss_pred EEEEEECCC---CCHHHHHHHHHHCCCeEEEeCCc------------------cCC--CCCCEEEECCCCCchHHHHHHH
Q 045794 49 VVTLLDYGA---GNVRSVRNAIRHLGFGIKDVQTP------------------EDI--LNANRLIFPGVGAFAAAMDVLN 105 (578)
Q Consensus 49 ~I~vld~~~---g~~~~i~~~L~~~Gv~v~~v~~~------------------~dl--~~~DGlILpGGg~~~~~~~~l~ 105 (578)
+|+|+=++. .-...+.+.|+..|+++.++... ++. .++|+||+|||....... ..
T Consensus 3 ~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~--~~ 80 (142)
T cd03132 3 KVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFAL--AP 80 (142)
T ss_pred EEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHH--cc
Confidence 467765542 23445678888999998877531 112 258999999985432221 12
Q ss_pred hhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 106 KTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 106 ~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
...+.++++++.+.++||.+||-|-.+|+.+
T Consensus 81 ~~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 81 SGRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred ChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 2357889999999999999999999999984
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C |
| >cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0014 Score=64.45 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=39.5
Q ss_pred CCCCEEEECCCCCchHHHH-HH-------HhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 84 LNANRLIFPGVGAFAAAMD-VL-------NKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 84 ~~~DGlILpGGg~~~~~~~-~l-------~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.+||+||||||......+. +. ....+.+.++++.++++||.+||.|-++|+.+
T Consensus 81 ~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~ 141 (213)
T cd03133 81 ADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKI 141 (213)
T ss_pred hHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHH
Confidence 4699999999843222221 11 12357788999999999999999999999884
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis. |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0012 Score=67.04 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.|.+..+.+.+..-..||++-..+..+.... .....+.++++++.++.|+.+|+||++.|+ ++++.+.
T Consensus 155 T~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~-----------~~~~~~~ 223 (263)
T CHL00200 155 SSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQ-----------IKQIKGW 223 (263)
T ss_pred CCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHH-----------HHHHHhc
Confidence 4567777777765558999887776543211 133466778888888999999999999876 9999999
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
|||.||+||+.++
T Consensus 224 GADGvVVGSalv~ 236 (263)
T CHL00200 224 NINGIVIGSACVQ 236 (263)
T ss_pred CCCEEEECHHHHH
Confidence 9999999999875
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.001 Score=70.02 Aligned_cols=92 Identities=26% Similarity=0.250 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccC------------CCCCCC---CchhHHHHHHHhhhc--cccEEEeCCccccccCC
Q 045794 308 KPVELARQYYKEGADEISFLNITGF------------RDFPLG---DLPMLQVLRLTSENV--FVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~------------~~~~~~---~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~ 370 (578)
+..++|+.+.+.|++.|.+..=... .++..+ ....++.++++++.+ .+||..-|||++.+|
T Consensus 217 ~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~d-- 294 (327)
T cd04738 217 ELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGED-- 294 (327)
T ss_pred HHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHH--
Confidence 6789999999999999998752100 011111 124478899999888 799999999999977
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
+.+++.+|||.|.+||.++.+. |.++.++.+
T Consensus 295 ---------a~e~l~aGAd~V~vg~~~~~~g-----------P~~~~~i~~ 325 (327)
T cd04738 295 ---------AYEKIRAGASLVQLYTGLVYEG-----------PGLVKRIKR 325 (327)
T ss_pred ---------HHHHHHcCCCHHhccHHHHhhC-----------cHHHHHHHh
Confidence 9999999999999999998753 455666654
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0022 Score=63.05 Aligned_cols=90 Identities=16% Similarity=0.219 Sum_probs=67.8
Q ss_pred CCcEEEEEECCC----CCHHHHHHHHHHCCCeEEEeCCc---------cCCCCCCEEEECCCCCchHHHHHHHhhcHHHH
Q 045794 46 SDSVVTLLDYGA----GNVRSVRNAIRHLGFGIKDVQTP---------EDILNANRLIFPGVGAFAAAMDVLNKTGMAEA 112 (578)
Q Consensus 46 ~~~~I~vld~~~----g~~~~i~~~L~~~Gv~v~~v~~~---------~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~ 112 (578)
..++|+++...+ .+...+.+.+++.|+++..+... +.+.++|+|+++||. +...+..++..++.+.
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~-~~~~~~~l~~t~~~~~ 106 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGN-QLRLLSVLRETPLLDA 106 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCc-HHHHHHHHHhCChHHH
Confidence 456788987554 35667888999999877654332 127889999999965 3445566666667777
Q ss_pred HHHHHhCCCCEEEEechHHHHhhh
Q 045794 113 LCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 113 i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
|++...++.|+.|+|.|..+++..
T Consensus 107 i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 107 ILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHHHcCCeEEEcCHHHHHhhhc
Confidence 777777999999999999999983
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from |
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00021 Score=70.68 Aligned_cols=193 Identities=19% Similarity=0.244 Sum_probs=103.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
++.+.++...+.|.|.|++ .+.. .+...-+++..+.+.+.+|+.+= |+...+ ..
T Consensus 20 ~~~~~~~~~~~~gtDai~V---GGS~----~~~~~d~vv~~ik~~~~lPvilfPg~~~~v------------------s~ 74 (230)
T PF01884_consen 20 NPEEALEAACESGTDAIIV---GGSD----TGVTLDNVVALIKRVTDLPVILFPGSPSQV------------------SP 74 (230)
T ss_dssp -HHHHHHHHHCTT-SEEEE---E-ST----HCHHHHHHHHHHHHHSSS-EEEETSTCCG--------------------T
T ss_pred CcHHHHHHHHhcCCCEEEE---CCCC----CccchHHHHHHHHhcCCCCEEEeCCChhhc------------------Cc
Confidence 5667777778889998885 2321 01222455666666689998765 444442 35
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
+||.+.+=|..=.++++|+- ..-.+.+ ++++.+ ++.. +
T Consensus 75 ~aDail~~svlNs~n~~~ii-------g~~~~aa~~~~~~~~e-~ip~-----g-------------------------- 115 (230)
T PF01884_consen 75 GADAILFPSVLNSRNPYWII-------GAQVEAAPLIKKLGLE-VIPT-----G-------------------------- 115 (230)
T ss_dssp TSSEEEEEEETTBSSTTTTT-------HHHHHHHHHCHHHHCC-EEEE-----E--------------------------
T ss_pred CCCEEEEEEEecCCCcchHh-------hHHHHHHHHHHhhcce-ecce-----E--------------------------
Confidence 78988775554444555542 1112222 334422 2220 1
Q ss_pred eEEEEEccc--------ccCCCCCHHHHHHHHH----HcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCC
Q 045794 464 WYQCTVNGG--------REGRPIGAYELAKAVE----DLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGA 531 (578)
Q Consensus 464 ~~~~~~~g~--------~~~~~~~~~e~~~~~~----~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi 531 (578)
| +.++.+ .+..+.+..+++..+. =+|. .++|..-- .|+...+.-+.++..++..++|+|++|||
T Consensus 116 -Y-ivi~~g~~v~~v~~a~pi~~~~~~iaa~~alA~~~~g~-~~iYLEaG-SGa~~~v~~~v~~~~~~~~~~~LivGGGI 191 (230)
T PF01884_consen 116 -Y-IVINPGSKVARVTGARPIPLDKPEIAAAAALAAEYLGM-PIIYLEAG-SGAYGPVPEEVIAAVKKLSDIPLIVGGGI 191 (230)
T ss_dssp -E-EEESTTSHHHHHTTB-----SHHHHHHHHHHHHHHTT--SEEEEE---TTSSS-HHHHHHHHHHHSSSSEEEEESS-
T ss_pred -E-EEECCCCceEEeecceecCCCcHHHHHHHHHHHHHhCC-CEEEEEeC-CCCCCCccHHHHHHHHhcCCccEEEeCCc
Confidence 1 112221 1112334444433322 2343 35555431 46665554455555566669999999999
Q ss_pred CCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 532 GAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 532 ~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+|.|.++++.+ .|||.|++|+++++... ++++.+..+
T Consensus 192 rs~e~A~~~~~-aGAD~IVvGn~iee~~~-~e~~~~~i~ 228 (230)
T PF01884_consen 192 RSPEQAREMAE-AGADTIVVGNAIEEDPD-LEEALETIK 228 (230)
T ss_dssp -SHHHHHHHHC-TTSSEEEESCHHHHHH--HHHHHTHHH
T ss_pred CCHHHHHHHHH-CCCCEEEECCEEEEcch-HHHHHHHHh
Confidence 99999999995 99999999999998765 566555443
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.015 Score=60.22 Aligned_cols=203 Identities=16% Similarity=0.198 Sum_probs=116.8
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
.+.+..++.+.+ .|+.+....-...+ -..-..+++.++++. ++||.+ .++ |. +++.+++.++.|
T Consensus 33 avi~aAe~~~sP--vIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~l-----HLD-----H~-~~~~i~~ai~~G 99 (293)
T PRK07315 33 AILRAAEAKKAP--VLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAI-----HLD-----HG-HYEDALECIEVG 99 (293)
T ss_pred HHHHHHHHHCCC--EEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEE-----ECC-----CC-CHHHHHHHHHcC
Confidence 445555555555 44555421101111 122356677788777 668754 222 34 567799999999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
++.|.+.-..+.. ++.++ ....+.+++..|| -.+-.-|....+. +++
T Consensus 100 ftSVm~d~S~l~~-eEni~-----~t~~v~~~a~~~g-v~vE~ElG~i~g~------------------ed~-------- 146 (293)
T PRK07315 100 YTSIMFDGSHLPV-EENLK-----LAKEVVEKAHAKG-ISVEAEVGTIGGE------------------EDG-------- 146 (293)
T ss_pred CCEEEEcCCCCCH-HHHHH-----HHHHHHHHHHHcC-CEEEEecCcccCc------------------Ccc--------
Confidence 9999995444432 22221 0123444455576 2232222211100 000
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEe--ccCCCCCC----CCCCHHHHHHHHhhC-CCcEEEecC--CCCHHHHH
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLN--CIDCDGQG----KGFDMDLIKLISDAV-SIPVIASSG--AGAVEHFS 538 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t--di~~dG~~----~G~d~~li~~l~~~~-~ipVIasGG--i~s~eDi~ 538 (578)
+.|... --++.+ ++++.+.|+|.+-+- .+ -|.+ ...+++.++++++.+ ++|+++-|| | +.++++
T Consensus 147 -~~g~s~--~t~pee-a~~f~~tgvD~LAv~iG~v--HG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi-~~e~~~ 219 (293)
T PRK07315 147 -IIGKGE--LAPIED-AKAMVETGIDFLAAGIGNI--HGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGI-PDDQIQ 219 (293)
T ss_pred -ccCccC--CCCHHH-HHHHHHcCCCEEeeccccc--cccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCC-CHHHHH
Confidence 111111 124555 455558899988755 33 2222 357999999999998 599999999 7 558899
Q ss_pred HHHHhcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
++.+ .|+.++-|+|.+.. -....+++++
T Consensus 220 ~~i~-~Gi~KiNv~T~i~~--~~~~~~~~~~ 247 (293)
T PRK07315 220 EAIK-LGVAKVNVNTECQI--AFANATRKFA 247 (293)
T ss_pred HHHH-cCCCEEEEccHHHH--HHHHHHHHHH
Confidence 9985 99999999998864 2234445444
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0024 Score=67.15 Aligned_cols=88 Identities=25% Similarity=0.356 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEec--------ccCC-------CCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCC
Q 045794 307 GKPVELARQYYKEGADEISFLNI--------TGFR-------DFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANG 371 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl--------~~~~-------~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~ 371 (578)
.+..++|+.+.+.|++.|.+.+- +... .+..-....++.++++.+.+++||...|||++.+|
T Consensus 175 ~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~D--- 251 (325)
T cd04739 175 SALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAED--- 251 (325)
T ss_pred cCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHH---
Confidence 47889999999999999998652 1100 00111123467888998888999999999999987
Q ss_pred CccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 372 RHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 372 ~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
+.+.+.+||+-|-++|+.+.+.+.++
T Consensus 252 --------a~e~l~aGA~~Vqv~ta~~~~gp~~~ 277 (325)
T cd04739 252 --------VVKYLLAGADVVMTTSALLRHGPDYI 277 (325)
T ss_pred --------HHHHHHcCCCeeEEehhhhhcCchHH
Confidence 88888899999999999998655444
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.011 Score=58.50 Aligned_cols=162 Identities=17% Similarity=0.142 Sum_probs=109.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc--c-cEEEe-CCccccccCCCCccChHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF--V-PLTVG-GGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~--~-pi~~g-GGir~~~d~~~~~~~~~~~~~~ 382 (578)
.+-+++++.+.+.|++-+=|. ++. ...++.|+++.++.. . .+.+| |-|.+.++ ++.
T Consensus 27 ~~a~~~~~al~~gGi~~iEiT-~~t--------p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~-----------a~~ 86 (222)
T PRK07114 27 EVAKKVIKACYDGGARVFEFT-NRG--------DFAHEVFAELVKYAAKELPGMILGVGSIVDAAT-----------AAL 86 (222)
T ss_pred HHHHHHHHHHHHCCCCEEEEe-CCC--------CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHH-----------HHH
Confidence 467789999999999855443 221 223677777764331 2 27787 67778755 999
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
..++||+.++--. + ++++++. +.++|- ..
T Consensus 87 a~~aGA~FiVsP~--~-------------~~~v~~~-~~~~~i----~~------------------------------- 115 (222)
T PRK07114 87 YIQLGANFIVTPL--F-------------NPDIAKV-CNRRKV----PY------------------------------- 115 (222)
T ss_pred HHHcCCCEEECCC--C-------------CHHHHHH-HHHcCC----CE-------------------------------
Confidence 9999999877531 2 2455554 445541 11
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCC-HHHHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGA-VEHFSDV 540 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s-~eDi~~l 540 (578)
+.| -.++- .+..+.++|++.+=+...+. -| ...++.++.-+ .+|+++.|||.- .+++.+.
T Consensus 116 ------iPG-----~~Tps-Ei~~A~~~Ga~~vKlFPA~~----~G--~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~y 177 (222)
T PRK07114 116 ------SPG-----CGSLS-EIGYAEELGCEIVKLFPGSV----YG--PGFVKAIKGPMPWTKIMPTGGVEPTEENLKKW 177 (222)
T ss_pred ------eCC-----CCCHH-HHHHHHHCCCCEEEECcccc----cC--HHHHHHHhccCCCCeEEeCCCCCcchhcHHHH
Confidence 112 12334 44566789999998888442 24 57788887766 689999999974 4889999
Q ss_pred HHhcCchHHhhhhhhccC
Q 045794 541 FRKTNASAALAAGIFHRK 558 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~ 558 (578)
++ .|+.+|.+||.+...
T Consensus 178 l~-aGa~avg~Gs~L~~~ 194 (222)
T PRK07114 178 FG-AGVTCVGMGSKLIPK 194 (222)
T ss_pred Hh-CCCEEEEEChhhcCc
Confidence 86 999999999988643
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0014 Score=66.40 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCC-chhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGD-LPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~-~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.|.+.++.+.+..-..||++-+.+..+..... ....+.++++++.+++|+.+|+||++.+| ++++++.
T Consensus 153 t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~-----------v~~~~~~ 221 (258)
T PRK13111 153 TTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQ-----------AAAIAAV 221 (258)
T ss_pred CCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHH-----------HHHHHHh
Confidence 55677777878777789998887654332222 23455889999888999999999999876 9999975
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
||.|++||+.++
T Consensus 222 -ADGviVGSaiv~ 233 (258)
T PRK13111 222 -ADGVIVGSALVK 233 (258)
T ss_pred -CCEEEEcHHHHH
Confidence 999999998876
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0017 Score=64.96 Aligned_cols=71 Identities=28% Similarity=0.288 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+.+++|+.+.+.|++.||+- ... .+...+++.|+++. +.+||..-|||.+.+| ++++++.
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~---~~~---~g~~ad~~~I~~i~--~~ipVIgnGgI~s~ed-----------a~~~l~~ 212 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVD---AMD---PGNHADLKKIRDIS--TELFIIGNNSVTTIES-----------AKEMFSY 212 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEEC---cCC---CCCCCcHHHHHHhc--CCCEEEEECCcCCHHH-----------HHHHHHc
Confidence 478899999999999998872 211 12245788888886 6799988899999977 9999999
Q ss_pred Ccceeecchh
Q 045794 387 GADKISIGSD 396 (578)
Q Consensus 387 Ga~~vv~gt~ 396 (578)
|||-|.+|..
T Consensus 213 GaD~VmiGR~ 222 (233)
T cd02911 213 GADMVSVARA 222 (233)
T ss_pred CCCEEEEcCC
Confidence 9999999998
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: |
Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0094 Score=61.17 Aligned_cols=183 Identities=15% Similarity=0.131 Sum_probs=86.8
Q ss_pred CcEEEEEECCCCCHHHHHH-HHHHCC-----CeEEEeCCc-------------------cCC--CCCCEEEECCCCCc--
Q 045794 47 DSVVTLLDYGAGNVRSVRN-AIRHLG-----FGIKDVQTP-------------------EDI--LNANRLIFPGVGAF-- 97 (578)
Q Consensus 47 ~~~I~vld~~~g~~~~i~~-~L~~~G-----v~v~~v~~~-------------------~dl--~~~DGlILpGGg~~-- 97 (578)
..+|+|+++ +-.+..-.. .++-.| +++.++... +++ ..+||+||.|-+..
T Consensus 34 pL~I~IlNL-MP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAPvE~l 112 (298)
T PF04204_consen 34 PLKIGILNL-MPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAPVEQL 112 (298)
T ss_dssp -EEEEEE----SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---TTTTS
T ss_pred ceEEEEEec-ccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCCcCCC
Confidence 467999998 677765443 333333 455555321 123 47999999996311
Q ss_pred -hHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEE-c
Q 045794 98 -AAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQI-T 175 (578)
Q Consensus 98 -~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~-~ 175 (578)
..+.++.. .+.+.+.++.+.-.+.+.||.|.|.-... .-|.. +.. .....+|..+..+ .
T Consensus 113 ~Fe~V~YW~--El~~i~dwa~~~v~stl~iCWgAqAaLy~------~yGI~--K~~---------l~~KlfGVf~~~~~~ 173 (298)
T PF04204_consen 113 PFEEVDYWD--ELTEIFDWAKTHVTSTLFICWGAQAALYH------FYGIP--KYP---------LPEKLFGVFEHRVLD 173 (298)
T ss_dssp -GGGSTTHH--HHHHHHHHHHHHEEEEEEETHHHHHHHHH------HH------EE---------EEEEEEEEEEEEES-
T ss_pred CcccCCcHH--HHHHHHHHHHHcCCcchhhhHHHHHHHHH------HcCCC--ccc---------CCCcceeceeeeccC
Confidence 11222222 24455555555679999999999984442 22321 111 1123567666664 4
Q ss_pred cCCcccccCCCeEEEEEeeeeeec----CCCCCCcEEEEeecCCceEEEEE--eCCEEEEeeCCcccCcchHHHHHHHhh
Q 045794 176 KDSEILDDVGDHHVYFVHSYRAMP----SDDNKEWVSSTCNYGDNFIASVR--RGNVHAVQFHPEKSGDVGLSVLRRFLH 249 (578)
Q Consensus 176 ~~~~l~~~l~~~~~~~~H~~~v~~----~~~~~~~~~~~~~~~d~~iegi~--~~~i~gvQFHPE~~~~~~~~l~~~Fl~ 249 (578)
..+++++++.. ..+.=||-+... +...+.+.+.......|. ..+. ++..+-+|.|||.+.. .|-+.+.+
T Consensus 174 ~~~pLl~Gfdd-~f~~PhSR~t~i~~~~i~~~~~L~vLa~s~~~G~-~l~~~~d~r~vfi~GH~EYd~~---TL~~EY~R 248 (298)
T PF04204_consen 174 PDHPLLRGFDD-TFFAPHSRYTEIDRDDIKKAPGLEVLAESEEAGV-FLVASKDGRQVFITGHPEYDAD---TLAKEYRR 248 (298)
T ss_dssp SS-GGGTT--S-EEEEEEEEEEE--HHHHCT-TTEEEEEEETTTEE-EEEEECCCTEEEE-S-TT--TT---HHHHHHHH
T ss_pred CCChhhcCCCc-cccCCcccccCCCHHHHhcCCCcEEEeccCCcce-EEEEcCCCCEEEEeCCCccChh---HHHHHHHH
Confidence 56799988862 223334444331 222233333333333343 3333 4678889999999754 46677776
Q ss_pred hccCC
Q 045794 250 PKTNI 254 (578)
Q Consensus 250 ~~~~~ 254 (578)
-+.+.
T Consensus 249 D~~~g 253 (298)
T PF04204_consen 249 DLAKG 253 (298)
T ss_dssp HHHCT
T ss_pred HHhCC
Confidence 66665
|
Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A. |
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0074 Score=64.18 Aligned_cols=89 Identities=27% Similarity=0.325 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHcC-CcEEEEeccCC--CCCC----CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhh
Q 045794 479 GAYELAKAVEDLG-AGEILLNCIDC--DGQG----KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALA 551 (578)
Q Consensus 479 ~~~e~~~~~~~~G-~~~ii~tdi~~--dG~~----~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~v 551 (578)
+..++++.+++.| ++.|-+..-.. .++. .|+-....+.++..+.+|||+.|+|.+++...+++++..+|-|.+
T Consensus 238 e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~ 317 (363)
T COG1902 238 EAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAM 317 (363)
T ss_pred HHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEe
Confidence 4578999999999 67776554222 2221 234556677788888899999999999999999997445999999
Q ss_pred hhhhccCCCCHHHHHH
Q 045794 552 AGIFHRKEVPIQSVKE 567 (578)
Q Consensus 552 gsa~~~~~~~~~~~~~ 567 (578)
|+++..++.-...+++
T Consensus 318 gR~~ladP~~~~k~~~ 333 (363)
T COG1902 318 GRPFLADPDLVLKAAE 333 (363)
T ss_pred chhhhcCccHHHHHHc
Confidence 9999887765555543
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0023 Score=62.44 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
.-+++++++.||..+.=. -.--|+..|+ |...++.+.+..++|||+--||+++.|...+.+ .|||+|++++|+..-.
T Consensus 141 ~v~arrLee~GcaavMPl-~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aME-lG~DaVL~NTAiA~A~ 218 (262)
T COG2022 141 PVLARRLEEAGCAAVMPL-GAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIARAK 218 (262)
T ss_pred HHHHHHHHhcCceEeccc-cccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHh-cccceeehhhHhhccC
Confidence 458999999999766522 2345888998 888999998888999999999999999999996 9999999999997655
Q ss_pred CCHH
Q 045794 560 VPIQ 563 (578)
Q Consensus 560 ~~~~ 563 (578)
-+..
T Consensus 219 DPv~ 222 (262)
T COG2022 219 DPVA 222 (262)
T ss_pred ChHH
Confidence 5444
|
|
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0021 Score=65.62 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhh--C---CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDA--V---SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~--~---~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
++-++++.+.|++.|.+ ..++.+.++++.+. . ++.+.++||| +++.+.++.+ +|+|.+++|+++
T Consensus 192 leea~~A~~~GaDiI~L---------Dn~~~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~-~GvD~IsvG~l~ 260 (273)
T PRK05848 192 LEEAKNAMNAGADIVMC---------DNMSVEEIKEVVAYRNANYPHVLLEASGNI-TLENINAYAK-SGVDAISSGSLI 260 (273)
T ss_pred HHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHH-cCCCEEEeChhh
Confidence 56777777899996662 24578888887664 2 4459999999 9999999985 999999999999
Q ss_pred ccCC
Q 045794 556 HRKE 559 (578)
Q Consensus 556 ~~~~ 559 (578)
|+.+
T Consensus 261 ~sa~ 264 (273)
T PRK05848 261 HQAT 264 (273)
T ss_pred cCCC
Confidence 9543
|
|
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00098 Score=70.60 Aligned_cols=87 Identities=25% Similarity=0.288 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEecc-------cC-----CCCCCC---CchhHHHHHHHhhhc--cccEEEeCCccccccCC
Q 045794 308 KPVELARQYYKEGADEISFLNIT-------GF-----RDFPLG---DLPMLQVLRLTSENV--FVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~-------~~-----~~~~~~---~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~ 370 (578)
+..++|+.+.+.|++.|.+.+=. .. .++..+ ....++.++++++.+ ++||..-|||++.+|
T Consensus 226 ~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~ed-- 303 (344)
T PRK05286 226 ELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAED-- 303 (344)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHH--
Confidence 57899999999999999998621 10 011111 123677899999988 799999999999977
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
+.+++.+||+-|-+||..+.+.|.++
T Consensus 304 ---------a~e~l~aGAd~V~v~~~~~~~gP~~~ 329 (344)
T PRK05286 304 ---------AYEKIRAGASLVQIYSGLIYEGPGLV 329 (344)
T ss_pred ---------HHHHHHcCCCHHHHHHHHHHhCchHH
Confidence 99999999999999999987534443
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0019 Score=63.97 Aligned_cols=75 Identities=23% Similarity=0.225 Sum_probs=57.3
Q ss_pred HHHHHHHcCCCeEEEE--ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 312 LARQYYKEGADEISFL--NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 312 ~a~~~~~~g~~~i~~~--Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
.++...+.|++.+.+- +..... ......+++.++++++.+++|+.++|||++.+| ++++++.|||
T Consensus 135 ea~~a~~~G~d~i~~~~~g~t~~~--~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~-----------~~~~l~~Gad 201 (219)
T cd04729 135 EALNAAKLGFDIIGTTLSGYTEET--AKTEDPDFELLKELRKALGIPVIAEGRINSPEQ-----------AAKALELGAD 201 (219)
T ss_pred HHHHHHHcCCCEEEccCccccccc--cCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHH-----------HHHHHHCCCC
Confidence 3567778899987532 222211 111245678999999888999999999999876 9999999999
Q ss_pred eeecchhhhc
Q 045794 390 KISIGSDAVY 399 (578)
Q Consensus 390 ~vv~gt~~~~ 399 (578)
-|++||+..+
T Consensus 202 gV~vGsal~~ 211 (219)
T cd04729 202 AVVVGSAITR 211 (219)
T ss_pred EEEEchHHhC
Confidence 9999999876
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.002 Score=65.01 Aligned_cols=81 Identities=22% Similarity=0.212 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCch-hHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLP-MLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~-~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+.+.++...+..-..||++-..+..+...+... ..+.++++++.+++|+.+|-||++.+| ++++++.
T Consensus 142 t~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~-----------v~~~~~~ 210 (250)
T PLN02591 142 TPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEH-----------AKQIAGW 210 (250)
T ss_pred CCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHH-----------HHHHHhc
Confidence 3345666666666677898887766543322223 345588888888999999999999876 9999999
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
|||-||+||+.++
T Consensus 211 GADGvIVGSalVk 223 (250)
T PLN02591 211 GADGVIVGSAMVK 223 (250)
T ss_pred CCCEEEECHHHHH
Confidence 9999999999876
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.016 Score=67.73 Aligned_cols=176 Identities=13% Similarity=0.114 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+.++.++...+.|++.|.+=+=+.... .......-++++++..++++.+ ++. ++-.++.|
T Consensus 20 ~~~~~l~~~l~~g~~~iqlR~K~~~~~---~~~~~a~~l~~l~~~~~~~lii----nd~-------------~~la~~~~ 79 (755)
T PRK09517 20 KVAGIVDSAISGGVSVVQLRDKNAGVE---DVRAAAKELKELCDARGVALVV----NDR-------------LDVAVELG 79 (755)
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCCCHH---HHHHHHHHHHHHHHHhCCeEEE----eCh-------------HHHHHHcC
Confidence 355677777788998888753332100 0011223344555556788875 332 55677889
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
+| |=+|...+. ++++.+..|+++ ++++-+.
T Consensus 80 ~d-VHlg~~dl~----------------~~~~r~~~~~~~-~iG~S~h-------------------------------- 109 (755)
T PRK09517 80 LH-VHIGQGDTP----------------YTQARRLLPAHL-ELGLTIE-------------------------------- 109 (755)
T ss_pred CC-eecCCCcCC----------------HHHHHHhcCCCC-EEEEeCC--------------------------------
Confidence 99 667753321 234445455443 3344322
Q ss_pred EEcccccCCCCCHHHHHHH---HHHc---CCcEEEEeccCCCCCCC----CCCHHHHHHHHhhCC---CcEEEecCCCCH
Q 045794 468 TVNGGREGRPIGAYELAKA---VEDL---GAGEILLNCIDCDGQGK----GFDMDLIKLISDAVS---IPVIASSGAGAV 534 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~---~~~~---G~~~ii~tdi~~dG~~~----G~d~~li~~l~~~~~---ipVIasGGi~s~ 534 (578)
+..+..+. .... |++.+.+-.+-...+.. ...++.++++++.+. +||+|-||| +.
T Consensus 110 -----------~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~ 177 (755)
T PRK09517 110 -----------TLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GL 177 (755)
T ss_pred -----------CHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CH
Confidence 12232221 1223 49999977665444443 347899999988887 999999999 88
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
+++.++.+ .|++||.+.+++...+.....++
T Consensus 178 ~~~~~~~~-~Ga~giAvisai~~a~d~~~a~~ 208 (755)
T PRK09517 178 RNAAELAA-TGIDGLCVVSAIMAAANPAAAAR 208 (755)
T ss_pred HHHHHHHH-cCCCEEEEehHhhCCCCHHHHHH
Confidence 99999985 99999999999986554333333
|
|
| >cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS) | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00074 Score=64.29 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=54.8
Q ss_pred CCCCCEEEECCCCC----chHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecC
Q 045794 83 ILNANRLIFPGVGA----FAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDS 158 (578)
Q Consensus 83 l~~~DGlILpGGg~----~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~ 158 (578)
..+|||+||+|... +.+...|-+ +.+.+..+-+...|+|++|.|+|....+. .| ....
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~E---l~~i~dwa~~~v~stl~iCWgaqaal~~~------yG------i~k~--- 121 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEE---LTEILDWAKTHVTSTLFSCWAAMAALYYF------YG------IKKH--- 121 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHH---HHHHHHHHHHhCcchHHHHHHHHHHHHHH------cC------cccc---
Confidence 46799999999742 111112222 34444444467899999999999988852 22 1111
Q ss_pred CCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeee
Q 045794 159 SNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYR 196 (578)
Q Consensus 159 ~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~ 196 (578)
.......|.....+...++++++++ .+.+-+.|...
T Consensus 122 --~~~~K~~Gvf~~~~~~~hpL~~g~~d~F~~PhSR~~~ 158 (175)
T cd03131 122 --QLPEKIFGVFPHTILEPHPLLRGLDDGFDVPHSRYAE 158 (175)
T ss_pred --cCCCceEEEEEeeecCCCccccCCCCceeecCccccc
Confidence 1122345655545545778888876 45554544433
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti |
| >cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0023 Score=63.87 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=39.7
Q ss_pred CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 83 ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 83 l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
..+||+||||||.....++ .....+.+.++++.+.++||-+||-|-++|+.+
T Consensus 92 ~~dYDav~iPGG~g~~~dl--~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDF--PHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhhhc--ccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 3579999999984322222 222356788999999999999999999999873
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0018 Score=66.85 Aligned_cols=82 Identities=22% Similarity=0.283 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEeccc------------CC---CCCCC---CchhHHHHHHHhhhc--cccEEEeCCccccc
Q 045794 308 KPVELARQYYKEGADEISFLNITG------------FR---DFPLG---DLPMLQVLRLTSENV--FVPLTVGGGIRDFT 367 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~------------~~---~~~~~---~~~~~~~i~~i~~~~--~~pi~~gGGir~~~ 367 (578)
+..++|+.+.+.|+|.|++..-.. .. .+..+ ....++.++++++.+ ++||...|||++.+
T Consensus 177 ~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~ 256 (289)
T cd02810 177 DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGE 256 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHH
Confidence 678999999999999999864211 00 00000 123577899999888 89999999999987
Q ss_pred cCCCCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 368 DANGRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 368 d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
| +.+++.+|||.|.+|+..+.+
T Consensus 257 d-----------a~~~l~~GAd~V~vg~a~~~~ 278 (289)
T cd02810 257 D-----------VLEMLMAGASAVQVATALMWD 278 (289)
T ss_pred H-----------HHHHHHcCccHheEcHHHHhc
Confidence 7 999999999999999999985
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0035 Score=66.19 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=59.9
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCC---CCCCHHHHHHHHhh---C--CCcEEEecCCCCHHHHHHHHHhcCchHHhh
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQG---KGFDMDLIKLISDA---V--SIPVIASSGAGAVEHFSDVFRKTNASAALA 551 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~---~G~d~~li~~l~~~---~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~v 551 (578)
..+.++.+.+.|++.|++-+- .|+. ..+-.+.+.++.+. + .+|||++|||++-.|+.+++. +||++|.+
T Consensus 223 ~~~dA~~a~~~G~d~I~vsnh--gG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kala-LGA~aV~i 299 (344)
T cd02922 223 TVEDAVLAAEYGVDGIVLSNH--GGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALC-LGAKAVGL 299 (344)
T ss_pred CHHHHHHHHHcCCCEEEEECC--CcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 367889999999999998752 2432 12234556666552 2 589999999999999999995 99999999
Q ss_pred hhhhccCCC
Q 045794 552 AGIFHRKEV 560 (578)
Q Consensus 552 gsa~~~~~~ 560 (578)
|+++..+..
T Consensus 300 G~~~l~~l~ 308 (344)
T cd02922 300 GRPFLYALS 308 (344)
T ss_pred CHHHHHHHh
Confidence 999976554
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.002 Score=67.72 Aligned_cols=83 Identities=23% Similarity=0.317 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCC-CcEEEecCCCC---HHHHHHHHHhcCchHHhhhh
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVS-IPVIASSGAGA---VEHFSDVFRKTNASAALAAG 553 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~-ipVIasGGi~s---~eDi~~l~~~~G~~gv~vgs 553 (578)
+.+++.+++++.|+..|-+|.+++|+.-+-+ ..+.|+++...+. +|||++||..+ ..|+.+..++.++++||+++
T Consensus 164 dtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR 243 (477)
T KOG2334|consen 164 DTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIAR 243 (477)
T ss_pred cHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhhhH
Confidence 6799999999999999999999999988876 8899999999886 99999999999 78898888889999999999
Q ss_pred hhccCCCC
Q 045794 554 IFHRKEVP 561 (578)
Q Consensus 554 a~~~~~~~ 561 (578)
+...++-.
T Consensus 244 ~A~~n~Si 251 (477)
T KOG2334|consen 244 AAESNPSI 251 (477)
T ss_pred hhhcCCce
Confidence 88766543
|
|
| >PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0032 Score=62.28 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=39.3
Q ss_pred CCCCCEEEECCCCCchHHH-------HHHH-hhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 83 ILNANRLIFPGVGAFAAAM-------DVLN-KTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 83 l~~~DGlILpGGg~~~~~~-------~~l~-~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
+.+||+||||||......+ ..++ ...+.+.++++.++++||.+||-|-++|+.+
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~ 144 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKI 144 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHH
Confidence 3579999999984221111 1111 2257788999999999999999999999874
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0036 Score=62.04 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-----cccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-----FVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-----~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
..|++..+.|.+. +|.+.+.=.+.-.++..-....++-|+++++.. .+||+++|||+. +++.
T Consensus 116 ~Tp~~~i~~~l~~-~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~------------eni~ 182 (220)
T PRK08883 116 ATPLHHLEYIMDK-VDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKV------------DNIR 182 (220)
T ss_pred CCCHHHHHHHHHh-CCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCH------------HHHH
Confidence 4788888877664 888888777743333222344566677776654 389999999995 4599
Q ss_pred HHHHcCcceeecchhhhcc
Q 045794 382 EYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~ 400 (578)
++.++|||.+|+||+.+..
T Consensus 183 ~l~~aGAd~vVvGSaIf~~ 201 (220)
T PRK08883 183 EIAEAGADMFVAGSAIFGQ 201 (220)
T ss_pred HHHHcCCCEEEEeHHHhCC
Confidence 9999999999999998863
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0032 Score=66.44 Aligned_cols=88 Identities=24% Similarity=0.278 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCC---------------CCCCCchhHHHHHHHhhhccccEEEeCCccccccCCC
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRD---------------FPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANG 371 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~---------------~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~ 371 (578)
.+..++|+.+.+.|++.|.+.+--...+ +..-....++.++++.+.+++||..-|||++.+|
T Consensus 177 ~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~D--- 253 (334)
T PRK07565 177 SNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAED--- 253 (334)
T ss_pred hhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHH---
Confidence 4788999999999999998864311000 0000123467788888888999999999999987
Q ss_pred CccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 372 RHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 372 ~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
+.+.+.+||+-|-++|..+.+.++++
T Consensus 254 --------a~e~l~aGA~~V~v~t~~~~~g~~~~ 279 (334)
T PRK07565 254 --------VIKMLLAGADVVMIASALLRHGPDYI 279 (334)
T ss_pred --------HHHHHHcCCCceeeehHHhhhCcHHH
Confidence 88888999999999999998645443
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0041 Score=66.45 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCC--CCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQG--KGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~--~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
.+-++.+.+.|++.|++.+- .|+. .++ -++.+.++++.+ .+|||+.|||++-.|+.+++. +||++|++|+.+
T Consensus 264 ~~dA~~a~~~G~d~I~vsnh--GGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALa-LGA~~v~iGr~~ 340 (383)
T cd03332 264 PDDARRAVEAGVDGVVVSNH--GGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALA-LGAKAVLIGRPY 340 (383)
T ss_pred HHHHHHHHHCCCCEEEEcCC--CCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHH-cCCCEEEEcHHH
Confidence 57788889999999998742 2322 233 467888887766 499999999999999999995 999999999988
Q ss_pred cc
Q 045794 556 HR 557 (578)
Q Consensus 556 ~~ 557 (578)
..
T Consensus 341 l~ 342 (383)
T cd03332 341 AY 342 (383)
T ss_pred HH
Confidence 63
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.014 Score=62.20 Aligned_cols=85 Identities=12% Similarity=0.110 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
..++++.+++.|++.|=+..-+..+ ..++..++.+++++.+++||+++|++ +++.+.+++++..||.|.+|+++...+
T Consensus 251 ~~~~~~~L~~~giD~i~vs~~~~~~-~~~~~~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iadP 328 (362)
T PRK10605 251 ALYLIEQLGKRGIAYLHMSEPDWAG-GEPYSDAFREKVRARFHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIANP 328 (362)
T ss_pred HHHHHHHHHHcCCCEEEeccccccC-CccccHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhCc
Confidence 4788999999999888766422111 12345567788888899999999997 899999999755599999999998877
Q ss_pred CCHHHHH
Q 045794 560 VPIQSVK 566 (578)
Q Consensus 560 ~~~~~~~ 566 (578)
.-...++
T Consensus 329 d~~~k~~ 335 (362)
T PRK10605 329 DLVARLQ 335 (362)
T ss_pred cHHHHHh
Confidence 5444433
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0029 Score=66.69 Aligned_cols=91 Identities=14% Similarity=0.155 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCC------CCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPL------GDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~------~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
+.+++++.+.+.|++.|++--=++...+.. ....+.+.++++++.+ .+||...|||++.+| +
T Consensus 152 ~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~ed-----------a 220 (333)
T PRK11815 152 FLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEE-----------A 220 (333)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHH-----------H
Confidence 567899999999999988652111111111 0234688999999885 899999999999977 8
Q ss_pred HHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHh
Q 045794 381 SEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRV 422 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (578)
+++++ |||-|++|..++.+ |.+++++.+.
T Consensus 221 ~~~l~-~aDgVmIGRa~l~n------------P~~~~~~~~~ 249 (333)
T PRK11815 221 KEHLQ-HVDGVMIGRAAYHN------------PYLLAEVDRE 249 (333)
T ss_pred HHHHh-cCCEEEEcHHHHhC------------CHHHHHHHHH
Confidence 88887 79999999999995 3566777543
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0033 Score=65.65 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCC-CCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH-
Q 045794 308 KPVELARQYYKEGADEISFLNITGFR-DFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR- 385 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~-~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~- 385 (578)
+.+++|+.+.+.|++.|++-= +.. ++..+...+.+.|+++.+.+++||..-|||.+.+| ++++++
T Consensus 149 ~~~~~a~~l~~~Gvd~i~Vh~--Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~d-----------a~~~l~~ 215 (312)
T PRK10550 149 RKFEIADAVQQAGATELVVHG--RTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQS-----------AQQCMAI 215 (312)
T ss_pred HHHHHHHHHHhcCCCEEEECC--CCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHH-----------HHHHHhc
Confidence 457999999999999888742 221 11112123789999999999999999999999977 888884
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
.|||-|.||..++.|
T Consensus 216 ~g~DgVmiGRg~l~n 230 (312)
T PRK10550 216 TGCDAVMIGRGALNI 230 (312)
T ss_pred cCCCEEEEcHHhHhC
Confidence 689999999999995
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0021 Score=66.84 Aligned_cols=77 Identities=21% Similarity=0.217 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC--CHHHHHHHHhhC----------CCcEEEecCCCCHHHHHHHHHhcCc--
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF--DMDLIKLISDAV----------SIPVIASSGAGAVEHFSDVFRKTNA-- 546 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~--d~~li~~l~~~~----------~ipVIasGGi~s~eDi~~l~~~~G~-- 546 (578)
...++++++.|+|.|++.....-|+. |. -+.++.++.+.+ ++|||++|||.+-..+..++. +|+
T Consensus 113 ~~~A~~a~~~GaD~vVaqG~EAGGH~-G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaala-LGA~~ 190 (320)
T cd04743 113 PGLLKQFLENGARKFIFEGRECGGHV-GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSA-LAAPL 190 (320)
T ss_pred HHHHHHHHHcCCCEEEEecCcCcCCC-CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHH-cCCcc
Confidence 56789999999999999999998875 53 344555554433 799999999999999999985 888
Q ss_pred ------hHHhhhhhhccCC
Q 045794 547 ------SAALAAGIFHRKE 559 (578)
Q Consensus 547 ------~gv~vgsa~~~~~ 559 (578)
+||.+|+.|...+
T Consensus 191 ~~~Ga~~GV~mGTrFl~t~ 209 (320)
T cd04743 191 AERGAKVGVLMGTAYLFTE 209 (320)
T ss_pred cccccccEEEEccHHhcch
Confidence 7999999987544
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.064 Score=55.17 Aligned_cols=207 Identities=15% Similarity=0.163 Sum_probs=124.7
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCC-CCCchhHHHHHHHhhhcc--ccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFP-LGDLPMLQVLRLTSENVF--VPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~-~~~~~~~~~i~~i~~~~~--~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
.+.+..++.+.+- |+.+.-..-.. .+-..-..+++.++++.. +||.+ .++ |..+++.+++.+++|
T Consensus 33 avi~AAe~~~sPv--Iiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~l-----HLD-----Hg~~~e~i~~ai~~G 100 (285)
T PRK07709 33 AILAAAEEEKSPV--ILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAI-----HLD-----HGSSFEKCKEAIDAG 100 (285)
T ss_pred HHHHHHHHHCCCE--EEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEE-----ECC-----CCCCHHHHHHHHHcC
Confidence 4555555556653 44443210011 121233456777777665 78854 332 566788999999999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
.+-|.++-+.+.-. .|.+..+++. ..+| +++-.--|.+. |++ .
T Consensus 101 ftSVM~DgS~lp~e---------eNi~~Trevv~~Ah~~g-----v~VEaElG~ig------------------g~e-d- 146 (285)
T PRK07709 101 FTSVMIDASHHPFE---------ENVETTKKVVEYAHARN-----VSVEAELGTVG------------------GQE-D- 146 (285)
T ss_pred CCEEEEeCCCCCHH---------HHHHHHHHHHHHHHHcC-----CEEEEEEeccC------------------Ccc-C-
Confidence 99999954444311 1344444444 3455 33332222210 000 0
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCH-HHHHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAV-EHFSDV 540 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~-eDi~~l 540 (578)
.+ . .....-.++.+..+-+++-|++.+-+--=+.-|.++| .|+++++++.+.+++|++.-||-+.+ ++++++
T Consensus 147 -~~--~-~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~a 222 (285)
T PRK07709 147 -DV--I-AEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKA 222 (285)
T ss_pred -Cc--c-cccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHH
Confidence 00 0 0011124788888888899999888655566777766 59999999999999999999999888 667777
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.+ .|+..+=+++.+...- ...+++++.
T Consensus 223 i~-~Gi~KiNi~T~l~~a~--~~~~~~~~~ 249 (285)
T PRK07709 223 IS-LGTSKINVNTENQIEF--TKAVREVLN 249 (285)
T ss_pred HH-cCCeEEEeChHHHHHH--HHHHHHHHH
Confidence 74 8988887777653221 334455443
|
|
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0021 Score=69.19 Aligned_cols=90 Identities=24% Similarity=0.230 Sum_probs=63.5
Q ss_pred HHHHHHHHHcC-CcEEEEeccCCCCCC-CCCCHHHHHHHH---hhC--------CCcEEEecCCCCHHHHHHHHHhcCch
Q 045794 481 YELAKAVEDLG-AGEILLNCIDCDGQG-KGFDMDLIKLIS---DAV--------SIPVIASSGAGAVEHFSDVFRKTNAS 547 (578)
Q Consensus 481 ~e~~~~~~~~G-~~~ii~tdi~~dG~~-~G~d~~li~~l~---~~~--------~ipVIasGGi~s~eDi~~l~~~~G~~ 547 (578)
.+.++.+++.| ++.|++. .+.-|+- ..+-+.++..+. +.+ ++|||++|||++.+++..++. +|++
T Consensus 166 ~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~a-lGAd 243 (418)
T cd04742 166 EEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFA-LGAD 243 (418)
T ss_pred HHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHH-cCCc
Confidence 55666677777 5777776 6666653 223445555544 333 599999999999999999996 9999
Q ss_pred HHhhhhhhccCCC--CHHHHHHHHHhC
Q 045794 548 AALAAGIFHRKEV--PIQSVKEHLYKE 572 (578)
Q Consensus 548 gv~vgsa~~~~~~--~~~~~~~~l~~~ 572 (578)
+|.+||+|.-..- .-+..|+.|.+.
T Consensus 244 ~V~~GT~flat~Ea~~s~~~K~~L~~a 270 (418)
T cd04742 244 FIVTGSINQCTVEAGTSDAVKDLLQKA 270 (418)
T ss_pred EEeeccHHHhCccccCCHHHHHHHHhC
Confidence 9999999865332 245677777554
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.054 Score=55.67 Aligned_cols=211 Identities=16% Similarity=0.188 Sum_probs=125.8
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
...+.+..++.++. .|+.+.-..-...+...-..+++.++++..+||.+ .++ |..+++.+++.+++|.
T Consensus 31 ~~avi~AAee~~sP--vIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPVal-----HLD-----H~~~~e~i~~ai~~Gf 98 (284)
T PRK12737 31 LQVVVETAAELRSP--VILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLAL-----HLD-----HHEDLDDIKKKVRAGI 98 (284)
T ss_pred HHHHHHHHHHhCCC--EEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHcCC
Confidence 33455555566665 33444421111112233445677888888999864 222 5667888999999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
.-|.++.+.+.-. .|.+..+++. ..+| +++-.--|.+. |.+-
T Consensus 99 tSVMiDgS~lp~e---------eNi~~T~~vv~~Ah~~g-----vsVEaElG~ig------------------g~e~--- 143 (284)
T PRK12737 99 RSVMIDGSHLSFE---------ENIAIVKEVVEFCHRYD-----ASVEAELGRLG------------------GQED--- 143 (284)
T ss_pred CeEEecCCCCCHH---------HHHHHHHHHHHHHHHcC-----CEEEEEEeecc------------------CccC---
Confidence 9999955444311 1334444443 4455 33333222210 0000
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCHHH-HHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAVEH-FSDVF 541 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~eD-i~~l~ 541 (578)
.+.. +-.+..-.++.+..+-+++-|+|.+-+--=+.-|.+.| .|+++++++.+.+++|++.-||=+.++| ++++.
T Consensus 144 ~~~~-~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai 222 (284)
T PRK12737 144 DLVV-DEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAI 222 (284)
T ss_pred Cccc-ccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH
Confidence 0000 00011123688888888899999887655566677766 5999999999999999999999877665 66666
Q ss_pred HhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 542 RKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+.|+..+=+++.+...- ...+++++.
T Consensus 223 -~~Gi~KiNi~T~l~~a~--~~~~~~~~~ 248 (284)
T PRK12737 223 -SLGICKVNVATELKIAF--SDAVKKYFY 248 (284)
T ss_pred -HCCCeEEEeCcHHHHHH--HHHHHHHHH
Confidence 48988887777653211 334445553
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.07 Score=54.89 Aligned_cols=211 Identities=12% Similarity=0.085 Sum_probs=126.9
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
...+.+..++.+.. .|+.+.-..-...+...-..+++.++++.++||.+ .++ |..+++.+++.+++|.
T Consensus 31 ~~avi~AAee~~sP--vIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPVal-----HLD-----Hg~~~e~i~~ai~~GF 98 (286)
T PRK12738 31 IQAILEVCSEMRSP--VILAGTPGTFKHIALEEIYALCSAYSTTYNMPLAL-----HLD-----HHESLDDIRRKVHAGV 98 (286)
T ss_pred HHHHHHHHHHHCCC--EEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHcCC
Confidence 33455555666665 33444321001112233456677888888999964 332 5677899999999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
.-|.++.+.+.-.+ |.+..+++. ..+| +++-.--|.+-.. .++
T Consensus 99 tSVM~DgS~lp~ee---------Ni~~T~evv~~Ah~~g-----v~VEaElG~igg~--------------ed~------ 144 (286)
T PRK12738 99 RSAMIDGSHFPFAE---------NVKLVKSVVDFCHSQD-----CSVEAELGRLGGV--------------EDD------ 144 (286)
T ss_pred CeEeecCCCCCHHH---------HHHHHHHHHHHHHHcC-----CeEEEEEEeeCCc--------------cCC------
Confidence 99999655443111 334444444 3354 3333222211000 000
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCHHH-HHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAVEH-FSDVF 541 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~eD-i~~l~ 541 (578)
+.... ....-.++.+..+-+++-|+|.+-+.-=+.-|.+.+ .|+++++++.+.+++|++.-||=+.++| ++++.
T Consensus 145 -~~~~~-~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai 222 (286)
T PRK12738 145 -MSVDA-ESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTI 222 (286)
T ss_pred -ccccc-chhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHH
Confidence 00000 011123678888888889999888665566777765 5999999999999999999998877654 66666
Q ss_pred HhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 542 RKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+.|+..+=+++.+...- ...+++++.
T Consensus 223 -~~GI~KiNi~T~l~~a~--~~~~~~~~~ 248 (286)
T PRK12738 223 -ELGVTKVNVATELKIAF--AGAVKAWFA 248 (286)
T ss_pred -HcCCeEEEeCcHHHHHH--HHHHHHHHH
Confidence 48988887777664322 334455553
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.075 Score=54.61 Aligned_cols=212 Identities=17% Similarity=0.183 Sum_probs=126.6
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
...+.+..++.+..-| +-+.-..-...+...-..+++.++++..+||.+ .++ |..++|.+++.+++|.
T Consensus 31 ~~avi~AAee~~sPvI--iq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~l-----HLD-----Hg~~~e~i~~Ai~~Gf 98 (284)
T PRK09195 31 MQVVVETAAELHSPVI--IAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLAL-----HLD-----HHEKFDDIAQKVRSGV 98 (284)
T ss_pred HHHHHHHHHHhCCCEE--EEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHcCC
Confidence 3345555556666533 444321001122234456788888888999864 332 4557888999999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHH---HHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQI---SRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+-|.++-+.+.-.+ |.+.-+++ +..+| +++-.--|.+- |++-
T Consensus 99 tSVM~DgS~l~~ee---------Ni~~T~~vv~~Ah~~g-----v~VEaElG~vg------------------g~e~--- 143 (284)
T PRK09195 99 RSVMIDGSHLPFAQ---------NISLVKEVVDFCHRFD-----VSVEAELGRLG------------------GQED--- 143 (284)
T ss_pred CEEEeCCCCCCHHH---------HHHHHHHHHHHHHHcC-----CEEEEEEeccc------------------Cccc---
Confidence 99999544443111 23444444 34455 33332222210 0000
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCHHH-HHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAVEH-FSDVF 541 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~eD-i~~l~ 541 (578)
.+... ..+..-.++.+..+-+++-|+|.+-+--=+.-|.+.| .|+++++++.+.+++|++.-||=+.+++ ++++.
T Consensus 144 ~~~~~-~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai 222 (284)
T PRK09195 144 DLQVD-EADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTI 222 (284)
T ss_pred Ccccc-cccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHH
Confidence 00000 0011124677888888889999887655566677766 6999999999999999999998877654 66666
Q ss_pred HhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 542 RKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
+.|+..+=+++.+...- ...+++++.+
T Consensus 223 -~~Gi~KiNi~T~l~~a~--~~~~~~~~~~ 249 (284)
T PRK09195 223 -KLGICKVNVATELKIAF--SQALKNYLTE 249 (284)
T ss_pred -HcCCeEEEeCcHHHHHH--HHHHHHHHHh
Confidence 48998887777664211 3445555543
|
|
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.023 Score=54.83 Aligned_cols=185 Identities=19% Similarity=0.194 Sum_probs=115.0
Q ss_pred EecCCHHHHHHHHHHcCCCeEEEEeccc-CCCCCCCCchhHHHHHHHhhhcccc--EEEeCCccccccCCCCccChHHHH
Q 045794 304 RNLGKPVELARQYYKEGADEISFLNITG-FRDFPLGDLPMLQVLRLTSENVFVP--LTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 304 ~~~~~p~~~a~~~~~~g~~~i~~~Dl~~-~~~~~~~~~~~~~~i~~i~~~~~~p--i~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
+..-+|+++|..|.+-||.-|.++-=.. +++ .-.|+..|++++. +..| +. .|.. ||-.-++ +
T Consensus 88 k~d~~~ae~A~~Yak~GAs~iSVLTe~k~FkG----sledL~~irk~~~-~k~p~~~l----L~Ke-----Fivd~~Q-I 152 (289)
T KOG4201|consen 88 KLDANAAEQALAYAKGGASCISVLTEPKWFKG----SLEDLVAIRKIAG-VKCPPKCL----LRKE-----FIVDPYQ-I 152 (289)
T ss_pred ccccCHHHHHHHHHhcCceeeeeecCchhhcc----cHHHHHHHHHHhc-CcCChHhH----hHHH-----HccCHHH-H
Confidence 3346999999999999999888754333 322 2456788887664 2333 11 1110 1111111 3
Q ss_pred HHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCC
Q 045794 381 SEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGE 460 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (578)
-+..-.|||.|.+=.+-+.+ ++ ...+-.+++..|-+-+| +
T Consensus 153 ~~aR~~GADaVLLIvamLs~-~~---------lk~l~k~~K~L~me~LV---------------------E--------- 192 (289)
T KOG4201|consen 153 YEARLKGADAVLLIVAMLSD-LL---------LKELYKISKDLGMEPLV---------------------E--------- 192 (289)
T ss_pred HHHHhcCCceeehHHHHcCh-HH---------HHHHHHHHHHcCCccee---------------------e---------
Confidence 33445699998876555553 21 13344556655533211 1
Q ss_pred CcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHH
Q 045794 461 EYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~ 538 (578)
+.-.+..+++.+.|+.-|=+++++-. .-..|+...+++.+-. ++=+++-.|+.+++|+.
T Consensus 193 -----------------Vn~~eEm~raleiGakvvGvNNRnL~--sFeVDlstTskL~E~i~kDvilva~SGi~tpdDia 253 (289)
T KOG4201|consen 193 -----------------VNDEEEMQRALEIGAKVVGVNNRNLH--SFEVDLSTTSKLLEGIPKDVILVALSGIFTPDDIA 253 (289)
T ss_pred -----------------eccHHHHHHHHHhCcEEEeecCCccc--eeeechhhHHHHHhhCccceEEEeccCCCCHHHHH
Confidence 11245566677779877777776543 2245777777777655 45678888999999999
Q ss_pred HHHHhcCchHHhhhhhhccCCCCHH
Q 045794 539 DVFRKTNASAALAAGIFHRKEVPIQ 563 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~~~~ 563 (578)
...+ .|+.+|+||-++....-+-+
T Consensus 254 ~~q~-~GV~avLVGEslmk~sDp~k 277 (289)
T KOG4201|consen 254 KYQK-AGVKAVLVGESLMKQSDPKK 277 (289)
T ss_pred HHHH-cCceEEEecHHHHhccCHHH
Confidence 9985 99999999999975544333
|
|
| >PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.004 Score=58.10 Aligned_cols=94 Identities=29% Similarity=0.437 Sum_probs=65.6
Q ss_pred HHHHHHHHHHCCCeEEEeCCcc--------CCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHH
Q 045794 60 VRSVRNAIRHLGFGIKDVQTPE--------DILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQ 131 (578)
Q Consensus 60 ~~~i~~~L~~~Gv~v~~v~~~~--------dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~Q 131 (578)
...+.+.|++.|+++..++... .+.++|+|++.||. +...+..++..++.+.|+++..+|+|+.|+-.|..
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~-~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~ 80 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGD-TFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGAM 80 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S--HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCC-HHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHHh
Confidence 3467789999999988876543 15789999999964 45566777878899999999999999999999998
Q ss_pred HHhhhcccC--------CCcCCCcccCceee
Q 045794 132 LLFQSSEEN--------GPVNGLGLIPGVVG 154 (578)
Q Consensus 132 lLa~a~~e~--------~~~~Glgl~~~~v~ 154 (578)
+++..+... ..+.|+|+++..+.
T Consensus 81 i~~~~~~~~~~~~~~~~~~~~gLgl~~~~i~ 111 (154)
T PF03575_consen 81 ILGPSIETDSDSDDVELTNYDGLGLLPFVII 111 (154)
T ss_dssp CTSSBSCCGTTCCGCCECESB---SSSSEEE
T ss_pred hccCceeecCcCCcccCCCCCcCCCCCCEeE
Confidence 887653211 11347777776654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A. |
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.016 Score=58.97 Aligned_cols=143 Identities=18% Similarity=0.173 Sum_probs=101.0
Q ss_pred HHHHHHHHHcCcce--eecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADK--ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~--vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|... +=+|...-+ ..+.++.+.+.+|++ +.+.+|+..
T Consensus 90 ~~~~~~~~~~G~~~~KiKvg~~~~~------------d~~~v~~vr~~~g~~-~~l~vDan~------------------ 138 (265)
T cd03315 90 AEEARRALEAGFRTFKLKVGRDPAR------------DVAVVAALREAVGDD-AELRVDANR------------------ 138 (265)
T ss_pred HHHHHHHHHCCCCEEEEecCCCHHH------------HHHHHHHHHHhcCCC-CEEEEeCCC------------------
Confidence 34677788888653 334532111 136788998999864 677888643
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|.. -+..++++.++++++..| +.-....|++.++++++.+++||.+.+.+.++
T Consensus 139 ----------------~~~~---~~a~~~~~~l~~~~i~~i-------EeP~~~~d~~~~~~l~~~~~ipia~dE~~~~~ 192 (265)
T cd03315 139 ----------------GWTP---KQAIRALRALEDLGLDYV-------EQPLPADDLEGRAALARATDTPIMADESAFTP 192 (265)
T ss_pred ----------------CcCH---HHHHHHHHHHHhcCCCEE-------ECCCCcccHHHHHHHHhhCCCCEEECCCCCCH
Confidence 2321 246788899999887655 22344568999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.++.++++...++.+.+--....|.....++.+.....|+++
T Consensus 193 ~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~ 234 (265)
T cd03315 193 HDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPV 234 (265)
T ss_pred HHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcE
Confidence 999999875668877654444455555777888888888876
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0036 Score=60.50 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=40.7
Q ss_pred cCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 81 EDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 81 ~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
++..++|.||||||..............+.++|+++.+++++|.+||.|..+|+.
T Consensus 65 ~~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 119 (195)
T cd03138 65 ADVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAE 119 (195)
T ss_pred cccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHH
Confidence 3457899999999753322101112235778999999999999999999999998
|
A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.078 Score=56.33 Aligned_cols=65 Identities=20% Similarity=0.344 Sum_probs=44.7
Q ss_pred CCeEEEeCCc----cC-CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhc
Q 045794 71 GFGIKDVQTP----ED-ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSS 137 (578)
Q Consensus 71 Gv~v~~v~~~----~d-l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~ 137 (578)
.+.|..+... +. ..+++.+|+|||.+.... ..+.. .-.+.|+++++.|.-.||||.|..+-+...
T Consensus 30 ~y~V~~v~~~~l~~~pw~~~~~LlV~PGG~d~~y~-~~l~~-~g~~~Ir~fV~~GG~YlGiCAGaY~as~~~ 99 (367)
T PF09825_consen 30 HYAVIPVTADELLNEPWQSKCALLVMPGGADLPYC-RSLNG-EGNRRIRQFVENGGGYLGICAGAYYASSRC 99 (367)
T ss_pred CeEEEEeCHHHhhcCccccCCcEEEECCCcchHHH-HhhCh-HHHHHHHHHHHcCCcEEEECcchhhhccee
Confidence 3566666532 12 357999999998743322 22221 125789999999999999999998877654
|
It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase. |
| >cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1 | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0044 Score=57.78 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=38.6
Q ss_pred CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 84 LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 84 ~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
.++|.||+|||....... .....+.++++++.+++++|.+||-|..+|+.
T Consensus 59 ~~~D~liipGg~~~~~~~--~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~ 108 (163)
T cd03135 59 DDYDAIVIPGGLPGAQNL--ADNEKLIKLLKEFNAKGKLIAAICAAPAVLAK 108 (163)
T ss_pred CCCCEEEECCCCchHHHH--HhCHHHHHHHHHHHHcCCEEEEEchhHHHHHH
Confidence 579999999975211111 12235788999999999999999999999998
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.08 Score=54.19 Aligned_cols=209 Identities=20% Similarity=0.268 Sum_probs=126.9
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
...+.+..++.+.+ .|+.+.-..-...+-..-...++.+++...+||.+ .++ |..+++.+.+.+++|.
T Consensus 26 ~~avi~AAe~~~sP--vIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~l-----HLD-----H~~~~~~i~~ai~~Gf 93 (276)
T cd00947 26 LKAILEAAEETRSP--VILQISEGAIKYAGLELLVAMVKAAAERASVPVAL-----HLD-----HGSSFELIKRAIRAGF 93 (276)
T ss_pred HHHHHHHHHHhCCC--EEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHhCC
Confidence 33455555566665 44455421111112233456677788888899865 222 4456778999999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+-|.++.+.+.-. .|.+..+++. ..+| +++-.--|.+. |++ .
T Consensus 94 tSVMiD~S~l~~e---------eNi~~t~~vv~~ah~~g-----v~VEaElG~i~------------------g~e-~-- 138 (276)
T cd00947 94 SSVMIDGSHLPFE---------ENVAKTKEVVELAHAYG-----VSVEAELGRIG------------------GEE-D-- 138 (276)
T ss_pred CEEEeCCCCCCHH---------HHHHHHHHHHHHHHHcC-----CeEEEEEeeec------------------Ccc-C--
Confidence 9999966555321 1334444444 4454 33332222110 000 0
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC----CCHHHHHHHHhhCCCcEEEecCCCCHHH-HHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG----FDMDLIKLISDAVSIPVIASSGAGAVEH-FSDV 540 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G----~d~~li~~l~~~~~ipVIasGGi~s~eD-i~~l 540 (578)
. .. ..+..-.++.+..+-+++-|++.+-+.-=+.-|.+.+ .|+++++++.+.+++|++.-||=+.+++ ++++
T Consensus 139 ~--~~-~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~a 215 (276)
T cd00947 139 G--VV-GDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKA 215 (276)
T ss_pred C--cc-cccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH
Confidence 0 00 0011133677888888888999888665566677765 5999999999999999999999988855 8888
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.+ .|+..+=+++.+...- .+.+++++.
T Consensus 216 i~-~Gi~KiNi~T~l~~a~--~~~~~~~~~ 242 (276)
T cd00947 216 IK-LGVCKININTDLRLAF--TAALREYLA 242 (276)
T ss_pred HH-cCCeEEEeChHHHHHH--HHHHHHHHH
Confidence 75 8998887777664322 444555554
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.003 Score=68.41 Aligned_cols=90 Identities=22% Similarity=0.204 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCC-cEEEEeccCCCCCC-CCCCHHHHHHHH---hhC--------CCcEEEecCCCCHHHHHHHHHhcCch
Q 045794 481 YELAKAVEDLGA-GEILLNCIDCDGQG-KGFDMDLIKLIS---DAV--------SIPVIASSGAGAVEHFSDVFRKTNAS 547 (578)
Q Consensus 481 ~e~~~~~~~~G~-~~ii~tdi~~dG~~-~G~d~~li~~l~---~~~--------~ipVIasGGi~s~eDi~~l~~~~G~~ 547 (578)
.+-++.+++.|+ +.|++ ..+.-|+- ..+-+.++..+. +.+ ++|||++|||++.+++..++. +||+
T Consensus 171 ~eEA~~a~~~g~aD~Ivv-e~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAla-LGAd 248 (444)
T TIGR02814 171 REEAELARRVPVADDICV-EADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFM-LGAD 248 (444)
T ss_pred HHHHHHHHhCCCCcEEEE-eccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHH-cCCc
Confidence 455566777775 66655 46666653 223556666663 444 789999999999999999995 9999
Q ss_pred HHhhhhhhccCCC--CHHHHHHHHHhC
Q 045794 548 AALAAGIFHRKEV--PIQSVKEHLYKE 572 (578)
Q Consensus 548 gv~vgsa~~~~~~--~~~~~~~~l~~~ 572 (578)
+|.+||++.-..- .-+..|+.|.+.
T Consensus 249 gV~~GT~flat~Esgas~~~K~~L~~a 275 (444)
T TIGR02814 249 FIVTGSVNQCTVEAGTSDNVKKLLAKA 275 (444)
T ss_pred EEEeccHHHhCccccCCHHHHHHHHhC
Confidence 9999999864332 245677777554
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0097 Score=59.32 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHcC-CCeEEEEecccCCCCCCCCchhHHHHHHHhhh-ccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEG-ADEISFLNITGFRDFPLGDLPMLQVLRLTSEN-VFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g-~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+|++.++.+.+.| +|.+.+..+....++..-....++.++++++. ...||++.|||+- +++.++.
T Consensus 125 ~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~------------e~i~~l~ 192 (229)
T PLN02334 125 GTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGP------------STIDKAA 192 (229)
T ss_pred CCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCH------------HHHHHHH
Confidence 36788888887774 99998887775433322223456667777765 3579999999965 4599999
Q ss_pred HcCcceeecchhhhcc
Q 045794 385 RSGADKISIGSDAVYA 400 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~ 400 (578)
++||+.+++||+.+..
T Consensus 193 ~aGad~vvvgsai~~~ 208 (229)
T PLN02334 193 EAGANVIVAGSAVFGA 208 (229)
T ss_pred HcCCCEEEEChHHhCC
Confidence 9999999999998863
|
|
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0049 Score=65.10 Aligned_cols=83 Identities=23% Similarity=0.296 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEe--cccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLN--ITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~D--l~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+.+++++.+.+.|++.|++.- .............+++..+++++.+++||..+|||++.++ +++++
T Consensus 241 ~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~-----------a~~~l 309 (336)
T cd02932 241 EDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQ-----------AEAIL 309 (336)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHH-----------HHHHH
Confidence 3567889999999999888631 1110000111234578889999989999999999999876 99999
Q ss_pred HcC-cceeecchhhhcc
Q 045794 385 RSG-ADKISIGSDAVYA 400 (578)
Q Consensus 385 ~~G-a~~vv~gt~~~~~ 400 (578)
+.| +|.|.+|..++.|
T Consensus 310 ~~g~aD~V~~gR~~i~d 326 (336)
T cd02932 310 ESGRADLVALGRELLRN 326 (336)
T ss_pred HcCCCCeehhhHHHHhC
Confidence 998 9999999999985
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.005 Score=67.05 Aligned_cols=88 Identities=22% Similarity=0.286 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHcCCCeEEE---------EecccC-----------CCCCCC---CchhHHHHHHHhhhc---cccEEEe
Q 045794 307 GKPVELARQYYKEGADEISF---------LNITGF-----------RDFPLG---DLPMLQVLRLTSENV---FVPLTVG 360 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~---------~Dl~~~-----------~~~~~~---~~~~~~~i~~i~~~~---~~pi~~g 360 (578)
.+..++|+.+.+.|++.|.+ +|++.. .++..+ +...++.|+++.+.+ ++||..-
T Consensus 180 ~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~ 259 (420)
T PRK08318 180 TDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGI 259 (420)
T ss_pred ccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEee
Confidence 46789999999999999986 454320 011112 122589999999877 7999888
Q ss_pred CCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 361 GGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 361 GGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
|||.+.+| +.+++.+||+-|-|+|+++.+.+..+
T Consensus 260 GGI~s~~d-----------a~e~i~aGA~~Vqi~ta~~~~gp~ii 293 (420)
T PRK08318 260 GGIETWRD-----------AAEFILLGAGTVQVCTAAMQYGFRIV 293 (420)
T ss_pred cCcCCHHH-----------HHHHHHhCCChheeeeeeccCCchhH
Confidence 99999977 88888999999999999998655443
|
|
| >cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0023 Score=60.60 Aligned_cols=49 Identities=18% Similarity=0.347 Sum_probs=38.6
Q ss_pred CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 84 LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 84 ~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.++|.|+||||...... ....+.++|+++.+++++|.+||-|.++|+.+
T Consensus 59 ~~~D~l~I~Gg~~~~~~----~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 59 EDYDLLILPGGDSWDNP----EAPDLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred hHccEEEEcCCcccccC----CcHHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 57999999998532211 12246789999999999999999999999993
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0089 Score=63.79 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCC-C-C-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGK-G-F-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~-G-~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
.+-++.+.+.|++.|++-+- -|+.. + + -.+.+.++.+.+ ++|||+.|||++-.|+.+++. +||++|++|+.|
T Consensus 256 ~~dA~~a~~~Gvd~I~Vs~h--GGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALa-LGA~~V~iGr~~ 332 (381)
T PRK11197 256 PEDARDAVRFGADGIVVSNH--GGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA-LGADTVLLGRAF 332 (381)
T ss_pred HHHHHHHHhCCCCEEEECCC--CCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHH-cCcCceeEhHHH
Confidence 56788899999999997652 33321 1 1 346677776655 599999999999999999995 999999999988
Q ss_pred ccC
Q 045794 556 HRK 558 (578)
Q Consensus 556 ~~~ 558 (578)
..+
T Consensus 333 l~~ 335 (381)
T PRK11197 333 VYA 335 (381)
T ss_pred HHH
Confidence 654
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.092 Score=51.06 Aligned_cols=178 Identities=21% Similarity=0.266 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
....+++.-..-||+ ++|+-+ +.++++.+.+.+.+||.|.+ +| .+..-...++|
T Consensus 28 ~V~~i~~AA~~ggAt---~vDIAa----------dp~LV~~~~~~s~lPICVSa----Ve---------p~~f~~aV~AG 81 (242)
T PF04481_consen 28 SVAAIVKAAEIGGAT---FVDIAA----------DPELVKLAKSLSNLPICVSA----VE---------PELFVAAVKAG 81 (242)
T ss_pred HHHHHHHHHHccCCc---eEEecC----------CHHHHHHHHHhCCCCeEeec----CC---------HHHHHHHHHhC
Confidence 444555555555776 678865 25778888888899998743 32 14466777899
Q ss_pred cceeecchhhhccchhhhhccccCCch----HHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKS----SLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
||-|=||.. ..|+..|.....+ +.++..+..+ .+.+|+-+-..
T Consensus 82 AdliEIGNf-----DsFY~qGr~f~a~eVL~Lt~~tR~LLP--~~~LsVTVPHi-------------------------- 128 (242)
T PF04481_consen 82 ADLIEIGNF-----DSFYAQGRRFSAEEVLALTRETRSLLP--DITLSVTVPHI-------------------------- 128 (242)
T ss_pred CCEEEecch-----HHHHhcCCeecHHHHHHHHHHHHHhCC--CCceEEecCcc--------------------------
Confidence 999999751 1133333333333 3444444454 35555543221
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEec-cCCCCCCCCC---------CHHHHHHHHhhCCCcEEEecCCCC
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNC-IDCDGQGKGF---------DMDLIKLISDAVSIPVIASSGAGA 533 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~td-i~~dG~~~G~---------d~~li~~l~~~~~ipVIasGGi~s 533 (578)
... + .-++++.++++.|+|-|=--. .+..-+..|. -+...-.+.+.+++||+++-|+++
T Consensus 129 ---------L~l-d-~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~ 197 (242)
T PF04481_consen 129 ---------LPL-D-QQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSA 197 (242)
T ss_pred ---------ccH-H-HHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcch
Confidence 000 0 236899999999998554221 2222222232 122333467778999999999987
Q ss_pred HHHHHHHHHhcCchHHhhhhhhcc
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
..-=.. + ..|++||-|||++.+
T Consensus 198 vT~PmA-i-aaGAsGVGVGSavn~ 219 (242)
T PF04481_consen 198 VTAPMA-I-AAGASGVGVGSAVNR 219 (242)
T ss_pred hhHHHH-H-HcCCcccchhHHhhh
Confidence 664444 4 389999999999964
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0075 Score=59.47 Aligned_cols=94 Identities=20% Similarity=0.153 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 477 PIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 477 ~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
..++.++++.+++.|++.|-+.+.+ +. .+-+++.++.+++.+++||+..|++.+.+++..+.+ .|++++.++....
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~~--~~-~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~-~Gad~v~l~~~~~ 105 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTEP--KY-FQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARA-AGADAVLLIVAAL 105 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCc--cc-cCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHH-cCCCEEEEeeccC
Confidence 4589999999999999999766543 22 334557778888878999999999999989999985 9999998877654
Q ss_pred cCCCCHHHHHHHHHhCCCe
Q 045794 557 RKEVPIQSVKEHLYKEGIE 575 (578)
Q Consensus 557 ~~~~~~~~~~~~l~~~~i~ 575 (578)
.. -.++++.+..+..|+.
T Consensus 106 ~~-~~~~~~~~~~~~~g~~ 123 (217)
T cd00331 106 DD-EQLKELYELARELGME 123 (217)
T ss_pred CH-HHHHHHHHHHHHcCCe
Confidence 32 2344444445555664
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.1 Score=53.57 Aligned_cols=212 Identities=14% Similarity=0.116 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
....+.+..++.++. .|+.+....-...+...-..+++.++++..+||.+ .++ |..++|.+++.+++|
T Consensus 28 ~~~avi~AAee~~sP--vIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPVal-----HLD-----Hg~~~e~i~~ai~~G 95 (282)
T TIGR01858 28 TIQAVVETAAEMRSP--VILAGTPGTFKHAGTEYIVALCSAASTTYNMPLAL-----HLD-----HHESLDDIRQKVHAG 95 (282)
T ss_pred HHHHHHHHHHHhCCC--EEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHcC
Confidence 334555555566665 44555421111112233456777888888999864 222 456788899999999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
.+-|.++.+.+.-. .|.+..+++. ..+| +++-.--|.+. |.+-
T Consensus 96 FtSVM~DgS~lp~e---------eNi~~T~~vv~~Ah~~g-----v~VEaElG~vg------------------g~e~-- 141 (282)
T TIGR01858 96 VRSAMIDGSHFPFA---------QNVKLVKEVVDFCHRQD-----CSVEAELGRLG------------------GVED-- 141 (282)
T ss_pred CCEEeecCCCCCHH---------HHHHHHHHHHHHHHHcC-----CeEEEEEEecC------------------CccC--
Confidence 99999955544311 1334444444 4455 33332222110 0000
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCHHH-HHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAVEH-FSDV 540 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~eD-i~~l 540 (578)
.+... ..+..-.++.+..+-+++-|+|.+-+--=+.-|.+++ .|+++++++++.+++|++.-||-+.++| ++++
T Consensus 142 -~~~~~-~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~a 219 (282)
T TIGR01858 142 -DLSVD-EEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRT 219 (282)
T ss_pred -CCccc-cchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHH
Confidence 00000 0011123678888888899999887665566677766 5999999999999999999999887655 6666
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
. +.|+..|=+++.+...- ...+++++.
T Consensus 220 i-~~Gi~KiNi~T~l~~a~--~~~~~~~~~ 246 (282)
T TIGR01858 220 I-ELGICKVNVATELKIAF--SGAVKAYFA 246 (282)
T ss_pred H-HcCCeEEEeCcHHHHHH--HHHHHHHHH
Confidence 6 48988887777664222 334455543
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.029 Score=57.79 Aligned_cols=214 Identities=18% Similarity=0.234 Sum_probs=127.6
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
...+.+..++.+.+- |+.+....-...+-..-...++.++++.++||.+ .++ |..+++.+++.++.|.
T Consensus 30 ~~avi~AAe~~~sPv--Ilq~~~~~~~~~~~~~~~~~~~~~a~~~~vPVal-----HLD-----H~~~~e~i~~ai~~Gf 97 (287)
T PF01116_consen 30 ARAVIEAAEELNSPV--ILQISPSEVKYMGLEYLAAMVKAAAEEASVPVAL-----HLD-----HGKDFEDIKRAIDAGF 97 (287)
T ss_dssp HHHHHHHHHHTTS-E--EEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEE-----EEE-----EE-SHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCE--EEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEe-----ecc-----cCCCHHHHHHHHHhCc
Confidence 334555555666654 4444321000011123455788888888999965 222 4566788999999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHH---HHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLE---QISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+-|.++-+.+.-. + |....+ +++..+| +++-.--|.+... .+|.
T Consensus 98 tSVM~DgS~l~~e-e--------Ni~~T~~vv~~ah~~g-----v~VEaElG~i~g~--------------ed~~----- 144 (287)
T PF01116_consen 98 TSVMIDGSALPFE-E--------NIAITREVVEYAHAYG-----VSVEAELGHIGGK--------------EDGI----- 144 (287)
T ss_dssp SEEEEE-TTS-HH-H--------HHHHHHHHHHHHHHTT------EEEEEESBSSSS--------------CTTC-----
T ss_pred ccccccCCcCCHH-H--------HHHHHHHHHHhhhhhC-----CEEEEEeeeeecc--------------CCCc-----
Confidence 9999955544311 1 233333 3445576 3343322222100 0010
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC-----CCHHHHHHHHhhC-CCcEEEecCCCCHH-HHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG-----FDMDLIKLISDAV-SIPVIASSGAGAVE-HFS 538 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G-----~d~~li~~l~~~~-~ipVIasGGi~s~e-Di~ 538 (578)
....-.+..-.++.+..+-+++-|++.+-+.==+.-|.+++ .|+++++++.+.+ ++|++.-||=+.++ +++
T Consensus 145 --~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~ 222 (287)
T PF01116_consen 145 --ESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIR 222 (287)
T ss_dssp --SSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHH
T ss_pred --cccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHH
Confidence 00000011224788888889999999988776677788887 5899999999999 99999999988877 677
Q ss_pred HHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 539 DVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
++.+ .|+..+=+++.+...- .+.+++++.+.
T Consensus 223 ~ai~-~Gi~KiNi~T~~~~a~--~~~~~~~~~~~ 253 (287)
T PF01116_consen 223 KAIK-NGISKINIGTELRRAF--TDALREYLAEN 253 (287)
T ss_dssp HHHH-TTEEEEEESHHHHHHH--HHHHHHHHHHS
T ss_pred HHHH-cCceEEEEehHHHHHH--HHHHHHHHHhC
Confidence 7774 8999887788665322 45566666554
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.11 Score=53.59 Aligned_cols=209 Identities=18% Similarity=0.224 Sum_probs=124.9
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcce
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~ 390 (578)
.+.+..++.+.. .|+.+....-...+...-..+++.++++..+||.+ .++ |..++|.+++.+++|.+-
T Consensus 33 avi~AAee~~sP--vIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPVal-----HLD-----H~~~~e~i~~ai~~GftS 100 (284)
T PRK12857 33 AIVAAAEAEKSP--VIIQASQGAIKYAGIEYISAMVRTAAEKASVPVAL-----HLD-----HGTDFEQVMKCIRNGFTS 100 (284)
T ss_pred HHHHHHHHhCCC--EEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEE-----ECC-----CCCCHHHHHHHHHcCCCe
Confidence 445555555655 44444421111112223345677788888999864 222 566788899999999999
Q ss_pred eecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 391 ISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 391 vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
|.++.+.+.-. .|.+..+++. ..+| +++-.--|.+- |.+- .+
T Consensus 101 VM~DgS~lp~e---------eNi~~T~~vv~~Ah~~g-----vsVEaElG~vg------------------g~e~---~~ 145 (284)
T PRK12857 101 VMIDGSKLPLE---------ENIALTKKVVEIAHAVG-----VSVEAELGKIG------------------GTED---DI 145 (284)
T ss_pred EEEeCCCCCHH---------HHHHHHHHHHHHHHHcC-----CEEEEEeeecC------------------CccC---CC
Confidence 99955544311 1344445544 3455 34433222210 0000 00
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCHHH-HHHHHHh
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAVEH-FSDVFRK 543 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~eD-i~~l~~~ 543 (578)
.. +..+..-.++.+..+-+++-|++.+-+--=+.-|.+.| .|+++++++.+.+++|++.-||=+.++| ++++.+
T Consensus 146 ~~-~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~- 223 (284)
T PRK12857 146 TV-DEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAIS- 223 (284)
T ss_pred Cc-ccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHH-
Confidence 00 00011123677888888889999887665566777776 5999999999999999999999887655 666664
Q ss_pred cCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 544 TNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 544 ~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.|+..+=+++-+...- .+.+++++.
T Consensus 224 ~Gi~KiNi~T~~~~a~--~~~~~~~~~ 248 (284)
T PRK12857 224 LGVRKVNIDTNIREAF--VARLREVLE 248 (284)
T ss_pred cCCeEEEeCcHHHHHH--HHHHHHHHH
Confidence 8988877677553221 344455554
|
|
| >COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.012 Score=56.62 Aligned_cols=72 Identities=17% Similarity=0.309 Sum_probs=51.4
Q ss_pred HHHHHHHHCCCeEEEeCCc---------------------cCC--CCCCEEEECCC-CCchHHHHHHHhhcHHHHHHHHH
Q 045794 62 SVRNAIRHLGFGIKDVQTP---------------------EDI--LNANRLIFPGV-GAFAAAMDVLNKTGMAEALCAYI 117 (578)
Q Consensus 62 ~i~~~L~~~Gv~v~~v~~~---------------------~dl--~~~DGlILpGG-g~~~~~~~~l~~~~l~~~i~~~~ 117 (578)
.-...|+++|.++.++... ++. .+||+|++||| ..+...... ..+.+.++++.
T Consensus 20 ~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~~~~---~~~~~~v~~~~ 96 (188)
T COG0693 20 VPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYLRPD---PDLLAFVRDFY 96 (188)
T ss_pred HHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhhccCc---HHHHHHHHHHH
Confidence 3457888899876654221 112 48999999998 432221111 35788999999
Q ss_pred hCCCCEEEEechHHHHhhh
Q 045794 118 EKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 118 ~~g~PIlGIClG~QlLa~a 136 (578)
+.++||.+||.|-++|+.+
T Consensus 97 ~~~k~vaaIC~g~~~L~~a 115 (188)
T COG0693 97 ANGKPVAAICHGPAVLAAA 115 (188)
T ss_pred HcCCEEEEEChhHHHHhcc
Confidence 9999999999999999983
|
|
| >cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0037 Score=59.89 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=40.3
Q ss_pred CCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 82 DILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 82 dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
+..++|.||+|||..... ......+.++++++..++++|.+||.|-++|+.+
T Consensus 61 ~~~~~D~liipGg~~~~~---~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 61 ALAAADTVIVPGGPDVDG---RPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred ccCCCCEEEECCCccccc---ccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 456899999999853321 1122357789999999999999999999999983
|
A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >TIGR01383 not_thiJ DJ-1 family protein | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0049 Score=58.58 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=39.1
Q ss_pred CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 83 ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 83 l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
..++|.||+|||....... .....+.++|+++.+.++||.+||-|-.+|+.+
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~--~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENL--RNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred cccCCEEEECCCchHHHHH--hhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 4569999999974211111 122257889999999999999999999999983
|
This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus. |
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.12 Score=53.47 Aligned_cols=210 Identities=11% Similarity=0.148 Sum_probs=124.0
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
...+.+.-++.+..-| +-++...-...+......+++.++++.. +||.+ .++ |..++|.+++.+++|
T Consensus 30 ~~avi~AAe~~~sPvI--lq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPVal-----HLD-----Hg~~~e~i~~ai~~G 97 (307)
T PRK05835 30 LNAIFEAGNEENSPLF--IQASEGAIKYMGIDMAVGMVKIMCERYPHIPVAL-----HLD-----HGTTFESCEKAVKAG 97 (307)
T ss_pred HHHHHHHHHHHCCCEE--EEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEE-----ECC-----CCCCHHHHHHHHHcC
Confidence 3345555556666643 4443211111122334456777777775 89864 332 456788899999999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHH---HHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQI---SRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
.+-|.++-+.+.-. .|.+..+++ +..+| +++-.--|.+. |.+ .
T Consensus 98 ftSVM~DgS~l~~e---------eNi~~T~~vve~Ah~~g-----v~VEaElG~vg------------------g~e-d- 143 (307)
T PRK05835 98 FTSVMIDASHHAFE---------ENLELTSKVVKMAHNAG-----VSVEAELGRLM------------------GIE-D- 143 (307)
T ss_pred CCEEEEeCCCCCHH---------HHHHHHHHHHHHHHHcC-----CEEEEEecccC------------------Ccc-C-
Confidence 99999954433211 123444444 34465 34433322221 000 0
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCC--C---CCHHHHHHHHhhCCCcEEEecCCCCHH----
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK--G---FDMDLIKLISDAVSIPVIASSGAGAVE---- 535 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~--G---~d~~li~~l~~~~~ipVIasGGi~s~e---- 535 (578)
.+... ..+..-.++.+..+-+++-|++.+-+--=+.-|.+. | .|+++++++++.+++|++.-||=+.++
T Consensus 144 -~~~~~-~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~ 221 (307)
T PRK05835 144 -NISVD-EKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRK 221 (307)
T ss_pred -Ccccc-cccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhh
Confidence 00000 001113467888888888999987765556677776 4 599999999999999999999999887
Q ss_pred ------------------HHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 536 ------------------HFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 536 ------------------Di~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
+++++.+ .|+..+=+++-+...- ...+++++
T Consensus 222 ~~~~~g~~~~~~~g~~~e~~~kai~-~GI~KiNi~T~l~~a~--~~~~~~~~ 270 (307)
T PRK05835 222 SYLDAGGDLKGSKGVPFEFLQESVK-GGINKVNTDTDLRIAF--IAEVRKVA 270 (307)
T ss_pred hhhhhccccccccCCCHHHHHHHHH-cCceEEEeChHHHHHH--HHHHHHHH
Confidence 6777774 7877776666553221 33445444
|
|
| >PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0017 Score=60.04 Aligned_cols=51 Identities=29% Similarity=0.436 Sum_probs=38.2
Q ss_pred CCCCCEEEECCCCCchHHHHHHH-h-hcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 83 ILNANRLIFPGVGAFAAAMDVLN-K-TGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 83 l~~~DGlILpGGg~~~~~~~~l~-~-~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
..+||+||||||.... ..+. . ..+.+.++++.+.++||.+||.|-.+|+.+
T Consensus 35 ~~~yDalilpGG~~~~---~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 35 PSDYDALILPGGHGGA---DDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp GGGESEEEEE-BTHHH---HHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred hhhCCEEEECCCCchh---hhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 4569999999986322 2222 2 357889999999999999999999999983
|
Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C .... |
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.014 Score=59.82 Aligned_cols=67 Identities=21% Similarity=0.122 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCC--CcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVS--IPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~--ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
.+-++++.+.|++.|.+ | ....+.++++.+... +|+.|+||| +.+.+.++.+ +|++++++|+..|+.
T Consensus 198 leea~~A~~~gaDyI~l-D--------~~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~-~Gvd~IAvg~l~~sa 266 (277)
T PRK08072 198 EEQVREAVAAGADIIMF-D--------NRTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGG-TGVDYISLGFLTHSV 266 (277)
T ss_pred HHHHHHHHHcCCCEEEE-C--------CCCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHH-cCCCEEEEChhhcCC
Confidence 45567777899999987 1 255688888877654 677899999 8899999985 999999999999943
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.14 Score=52.84 Aligned_cols=210 Identities=14% Similarity=0.147 Sum_probs=125.6
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCC-CCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFP-LGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~-~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
..+.+..++.++. .|+.+.-..-.. .+-..-..+++..+++. .+||.+ .++ |..++|.+++.+++
T Consensus 32 ~avi~AAee~~sP--vIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~l-----HLD-----Hg~~~e~i~~ai~~ 99 (288)
T TIGR00167 32 NAVLEAAAEEKSP--VIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVAL-----HLD-----HGASEEDCAQAVKA 99 (288)
T ss_pred HHHHHHHHHHCCC--EEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEE-----ECC-----CCCCHHHHHHHHHc
Confidence 3455555566665 444554211111 12223455667777777 788864 222 56678889999999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHH---hCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR---VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
|.+-|.++.+.+.-. .|.+..+++.+ .+| +++-.--|.+... .++
T Consensus 100 GftSVMiDgS~lp~e---------eNi~~T~~vv~~Ah~~g-----v~VEaElG~vgg~--------------e~~---- 147 (288)
T TIGR00167 100 GFSSVMIDGSHEPFE---------ENIELTKKVVERAHKMG-----VSVEAELGTLGGE--------------EDG---- 147 (288)
T ss_pred CCCEEEecCCCCCHH---------HHHHHHHHHHHHHHHcC-----CEEEEEEeeccCc--------------cCC----
Confidence 999999965554311 13445555543 354 3333222211000 000
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC----CCHHHHHHHHhhCCCcEEEecCCCCH-HHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG----FDMDLIKLISDAVSIPVIASSGAGAV-EHFS 538 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G----~d~~li~~l~~~~~ipVIasGGi~s~-eDi~ 538 (578)
+... -.+..-.++.+..+-+++-|++.+-+--=+.-|.+.+ .|+++++++.+.+++|++.-||-+.+ ++++
T Consensus 148 ---~~~~-~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~ 223 (288)
T TIGR00167 148 ---VSVA-DESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIK 223 (288)
T ss_pred ---cccc-cccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHH
Confidence 0000 0011123567777777788999988665566666644 78999999999999999999999888 4688
Q ss_pred HHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
++.+ .|+..+=+++.+...- ...+++++.
T Consensus 224 ~ai~-~Gi~KiNi~T~l~~a~--~~~~~~~~~ 252 (288)
T TIGR00167 224 KAIS-LGVVKVNIDTELQIAF--AAAVRNYYA 252 (288)
T ss_pred HHHH-cCCeEEEcChHHHHHH--HHHHHHHHH
Confidence 8875 8988887777653221 334455443
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.012 Score=57.33 Aligned_cols=80 Identities=23% Similarity=0.213 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-----ccEEEeCCccccccCCCCccChHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-----VPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-----~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
++.+.++.+... ++.+++.-+.....+..-....++.++++++.+. +|+.++|||+. ++ +++
T Consensus 116 ~~~~~~~~~~~~-~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-en-----------v~~ 182 (211)
T cd00429 116 TPVEVLEPYLDE-VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ET-----------IPL 182 (211)
T ss_pred CCHHHHHHHHhh-CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HH-----------HHH
Confidence 356677776544 8888775554211111112233455666665553 89999999997 44 999
Q ss_pred HHHcCcceeecchhhhcc
Q 045794 383 YFRSGADKISIGSDAVYA 400 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~ 400 (578)
+++.|+|.+++||+.++.
T Consensus 183 ~~~~gad~iivgsai~~~ 200 (211)
T cd00429 183 LAEAGADVLVAGSALFGS 200 (211)
T ss_pred HHHcCCCEEEECHHHhCC
Confidence 999999999999999874
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PRK04155 chaperone protein HchA; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.01 Score=61.20 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=38.7
Q ss_pred CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 84 LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 84 ~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.+||+||||||.....++. ....+.+.++++.++++||.+||-|-++|..+
T Consensus 146 ~dYDaV~iPGG~g~~~dL~--~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 146 SDYAAVFIPGGHGALIGLP--ESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred ccccEEEECCCCchHHHHh--hCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 5899999999843222222 23357788999999999999999999877763
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.004 Score=64.97 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+.+++++.+.+.|++.|.| .---..... ....+.+.|+++++.+.+||.+-|+|.+.+| ++++++.
T Consensus 138 ~~~~~~~~~l~~~G~~~i~v-H~Rt~~q~~-~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d-----------~~~~~~~ 204 (309)
T PF01207_consen 138 EETIEFARILEDAGVSAITV-HGRTRKQRY-KGPADWEAIAEIKEALPIPVIANGDIFSPED-----------AERMLEQ 204 (309)
T ss_dssp HHHHHHHHHHHHTT--EEEE-ECS-TTCCC-TS---HHHHHHCHHC-TSEEEEESS--SHHH-----------HHHHCCC
T ss_pred hHHHHHHHHhhhcccceEEE-ecCchhhcC-CcccchHHHHHHhhcccceeEEcCccCCHHH-----------HHHHHHh
Confidence 35789999999999997764 332111222 2378899999999999999999999999977 8888877
Q ss_pred -Ccceeecchhhhccc
Q 045794 387 -GADKISIGSDAVYAA 401 (578)
Q Consensus 387 -Ga~~vv~gt~~~~~~ 401 (578)
|+|.|.+|..++.||
T Consensus 205 tg~dgvMigRgal~nP 220 (309)
T PF01207_consen 205 TGADGVMIGRGALGNP 220 (309)
T ss_dssp H-SSEEEESHHHCC-C
T ss_pred cCCcEEEEchhhhhcC
Confidence 999999999999953
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0094 Score=60.03 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..|.+.++.+.+.. +.+.+.=.++-.++.. .....+.++++++.. ..||++||||++.++ ++++.+
T Consensus 139 ~T~~e~l~~~~~~~-~~~l~msv~~~~g~~~-~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~-----------i~~~~~ 205 (244)
T PRK13125 139 KFPDLLIHRLSKLS-PLFIYYGLRPATGVPL-PVSVERNIKRVRNLVGNKYLVVGFGLDSPED-----------ARDALS 205 (244)
T ss_pred CCCHHHHHHHHHhC-CCEEEEEeCCCCCCCc-hHHHHHHHHHHHHhcCCCCEEEeCCcCCHHH-----------HHHHHH
Confidence 35567777777664 4444445544323221 123344677777665 479999999999866 999999
Q ss_pred cCcceeecchhhhc
Q 045794 386 SGADKISIGSDAVY 399 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~ 399 (578)
+|||.+++||+.++
T Consensus 206 ~gaD~vvvGSai~~ 219 (244)
T PRK13125 206 AGADGVVVGTAFIE 219 (244)
T ss_pred cCCCEEEECHHHHH
Confidence 99999999998875
|
|
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.15 Score=53.62 Aligned_cols=218 Identities=11% Similarity=0.062 Sum_probs=124.7
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
...+.+..++.+.. .|+.+....-...+...-..+++.+++... +||.+ .++ |..+++.+++.+++|
T Consensus 29 ~~aii~AAEe~~sP--vIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPVal-----HLD-----Hg~~~e~i~~Ai~~G 96 (347)
T TIGR01521 29 MRAIMEAADKTDSP--VILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVM-----HQD-----HGNSPATCQRAIQLG 96 (347)
T ss_pred HHHHHHHHHHhCCC--EEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEE-----ECC-----CCCCHHHHHHHHHcC
Confidence 33455555566665 444554211111222334556777777775 89864 332 566788899999999
Q ss_pred cceeecchhhhccch---hhhhccccCCchHHHHH---HHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 388 ADKISIGSDAVYAAE---DYLKTGVKTGKSSLEQI---SRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 388 a~~vv~gt~~~~~~~---~~~~~~~~~~~~~l~~~---~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
..-|.+..+.+.+.+ .|- .|....+++ +..+| +++-.--|.+- -...+..|+
T Consensus 97 FtSVMiDgS~l~~~~~~~p~e-----ENI~~Tkevve~Ah~~G-----vsVEaELG~ig-----------g~e~~~~g~- 154 (347)
T TIGR01521 97 FTSVMMDGSLREDAKTPADYD-----YNVRVTAEVVAFAHAVG-----ASVEGELGCLG-----------SLETGMGEA- 154 (347)
T ss_pred CCEEeecCcCCcccCCCCCHH-----HHHHHHHHHHHHHHHcC-----CeEEEEeeecc-----------ccccccccc-
Confidence 999999554431100 010 123344444 34455 23332222110 000000000
Q ss_pred cceEEEEEcc--cc-----cCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC--------CCHHHHHHHHhhC-CCcE
Q 045794 462 YAWYQCTVNG--GR-----EGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG--------FDMDLIKLISDAV-SIPV 525 (578)
Q Consensus 462 ~~~~~~~~~g--~~-----~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G--------~d~~li~~l~~~~-~ipV 525 (578)
..+ .. ...-.++.+..+-+++-|++.+-+--=+.-|.+++ .|+++++++.+.+ ++|+
T Consensus 155 -------~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPL 227 (347)
T TIGR01521 155 -------EDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHL 227 (347)
T ss_pred -------ccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCE
Confidence 000 00 01123678888888889999887554455666654 7899999999999 7999
Q ss_pred EEecCCCCH----------------------HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 526 IASSGAGAV----------------------EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 526 IasGGi~s~----------------------eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+.-||=+.+ ++++++.+ .|+..|=+++-+...- ...+++++.
T Consensus 228 VLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~-~GI~KVNi~Tdl~~a~--~~~~~~~~~ 291 (347)
T TIGR01521 228 VMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIK-YGVRKVNIDTDLRLAS--TAAFRRFAA 291 (347)
T ss_pred EEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHH-CCCeeEEeChHHHHHH--HHHHHHHHH
Confidence 999998865 78888885 8988887777553221 334455553
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.017 Score=59.01 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
.+-++++.+.|++.|.+=.+ ..+.++++.+.. ++|+.++||| +++.+.++.+ +|++++++++.+|+.
T Consensus 192 ~eea~~A~~~gaDyI~ld~~---------~~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~-~Gvd~Iav~sl~~~a 260 (268)
T cd01572 192 LEQLKEALEAGADIIMLDNM---------SPEELREAVALLKGRVLLEASGGI-TLENIRAYAE-TGVDYISVGALTHSA 260 (268)
T ss_pred HHHHHHHHHcCCCEEEECCc---------CHHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHH-cCCCEEEEEeeecCC
Confidence 45577778899999887433 367788877655 5899999999 7899999985 999999999999943
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.012 Score=60.87 Aligned_cols=84 Identities=15% Similarity=0.011 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHc--CCCeEEEE---------ecccCC------C---CCCC---CchhHHHHHHHhhhc--cccEEEeCC
Q 045794 308 KPVELARQYYKE--GADEISFL---------NITGFR------D---FPLG---DLPMLQVLRLTSENV--FVPLTVGGG 362 (578)
Q Consensus 308 ~p~~~a~~~~~~--g~~~i~~~---------Dl~~~~------~---~~~~---~~~~~~~i~~i~~~~--~~pi~~gGG 362 (578)
+..++|+...+. |++.|.++ |.++.+ . +..+ +...++.|+++++.+ .+||..-||
T Consensus 172 ~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GG 251 (294)
T cd04741 172 QFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGG 251 (294)
T ss_pred HHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCC
Confidence 456788888888 89988863 442221 0 0000 223567788888888 499998999
Q ss_pred ccccccCCCCccChHHHHHHHHHcCcceeecchhhhccch
Q 045794 363 IRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAE 402 (578)
Q Consensus 363 ir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~ 402 (578)
|.+.+| +.+++.+||+-|-++|+++...|
T Consensus 252 I~s~~d-----------a~e~l~aGA~~Vqv~ta~~~~gp 280 (294)
T cd04741 252 VLDGRG-----------AFRMRLAGASAVQVGTALGKEGP 280 (294)
T ss_pred CCCHHH-----------HHHHHHcCCCceeEchhhhhcCc
Confidence 999987 88888899999999999996433
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.014 Score=61.64 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+-++.+.+.|++.|++-+-..-+...++ -++.+.++++.+ .+|||++|||++-.|+.+++. +||++|++|+.+..
T Consensus 234 ~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALA-LGAdaV~iGrp~L~ 312 (366)
T PLN02979 234 GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVF 312 (366)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 57788999999999997765322222222 356777776665 499999999999999999995 99999999998763
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.017 Score=56.09 Aligned_cols=79 Identities=23% Similarity=0.215 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+|.+..+ ..+.|++.+.+ ..... .+..+.....+.++++.+...+|++++|||+ .+ ++++++++
T Consensus 114 ~t~~e~~~-~~~~~~d~v~~-~~~~~-~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~-~~-----------~i~~~~~~ 178 (202)
T cd04726 114 EDPEKRAK-LLKLGVDIVIL-HRGID-AQAAGGWWPEDDLKKVKKLLGVKVAVAGGIT-PD-----------TLPEFKKA 178 (202)
T ss_pred CCHHHHHH-HHHCCCCEEEE-cCccc-ccccCCCCCHHHHHHHHhhcCCCEEEECCcC-HH-----------HHHHHHhc
Confidence 57888887 66789997665 22110 0111113346778888766689999999997 54 49999999
Q ss_pred Ccceeecchhhhcc
Q 045794 387 GADKISIGSDAVYA 400 (578)
Q Consensus 387 Ga~~vv~gt~~~~~ 400 (578)
||+.+++||+.++.
T Consensus 179 Gad~vvvGsai~~~ 192 (202)
T cd04726 179 GADIVIVGRAITGA 192 (202)
T ss_pred CCCEEEEeehhcCC
Confidence 99999999998763
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.099 Score=53.79 Aligned_cols=190 Identities=17% Similarity=0.184 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEecc-----cCCC-CCCCCchhHHHHHHHhhhccccEEEe--CCccccccCCCCccChHHH
Q 045794 308 KPVELARQYYKEGADEISFLNIT-----GFRD-FPLGDLPMLQVLRLTSENVFVPLTVG--GGIRDFTDANGRHYSSLEV 379 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~-----~~~~-~~~~~~~~~~~i~~i~~~~~~pi~~g--GGir~~~d~~~~~~~~~~~ 379 (578)
|+. -|+...+.|++-+++--.. +..| +.......++.+++|.+.+++||.++ .|-.+... -...
T Consensus 22 Da~-SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~-------v~~t 93 (285)
T TIGR02317 22 NAM-AALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFN-------VART 93 (285)
T ss_pred CHH-HHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHH-------HHHH
Confidence 543 3566677899988874211 2222 22234567888999999999999886 44444332 2356
Q ss_pred HHHHHHcCcceeec-chhh-----------hccchhhhhccccCCchHHHHHHHhC-CCCeEEEEEeccccccCCCCccc
Q 045794 380 ASEYFRSGADKISI-GSDA-----------VYAAEDYLKTGVKTGKSSLEQISRVY-GNQAVVVSIDPRRVYITHPNDVE 446 (578)
Q Consensus 380 ~~~~l~~Ga~~vv~-gt~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~iv~slD~~~~~~~~~~~~~ 446 (578)
++++.++|+.-|.| .... +...++++ +-|+.+.+.- +.+.+++ +|...
T Consensus 94 v~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~--------~kI~Aa~~a~~~~d~~Ii---ARTDa-------- 154 (285)
T TIGR02317 94 VREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMV--------DKIAAAVDAKRDEDFVII---ARTDA-------- 154 (285)
T ss_pred HHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHH--------HHHHHHHHhccCCCEEEE---EEcCc--------
Confidence 89999999988888 3221 11111221 2233332221 2222221 22110
Q ss_pred cceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcE-
Q 045794 447 FKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPV- 525 (578)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipV- 525 (578)
....|. + +.++-++.+.+.|++.|.+.... +.+.++++.+.++.|+
T Consensus 155 --------------------~~~~g~-d----eAI~Ra~ay~~AGAD~vfi~g~~--------~~e~i~~~~~~i~~Pl~ 201 (285)
T TIGR02317 155 --------------------RAVEGL-D----AAIERAKAYVEAGADMIFPEALT--------SLEEFRQFAKAVKVPLL 201 (285)
T ss_pred --------------------ccccCH-H----HHHHHHHHHHHcCCCEEEeCCCC--------CHHHHHHHHHhcCCCEE
Confidence 001111 1 35778899999999999986532 5688899999888898
Q ss_pred --EEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 526 --IASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 526 --IasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+..+|-.-.-++.+|.+ .|+.-|+.+..+...
T Consensus 202 ~n~~~~~~~p~~s~~eL~~-lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 202 ANMTEFGKTPLFTADELRE-AGYKMVIYPVTAFRA 235 (285)
T ss_pred EEeccCCCCCCCCHHHHHH-cCCcEEEEchHHHHH
Confidence 34444322235667664 899888888765543
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.11 Score=53.51 Aligned_cols=189 Identities=18% Similarity=0.210 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEec--c----cCCC-CCCCCchhHHHHHHHhhhccccEEEe--CCccccccCCCCccChHH
Q 045794 308 KPVELARQYYKEGADEISFLNI--T----GFRD-FPLGDLPMLQVLRLTSENVFVPLTVG--GGIRDFTDANGRHYSSLE 378 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl--~----~~~~-~~~~~~~~~~~i~~i~~~~~~pi~~g--GGir~~~d~~~~~~~~~~ 378 (578)
|+. -|+...+.|++-+++-=. . |..| +.......++.+++|.+.+++||.++ .|-.+... -..
T Consensus 26 Da~-SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~-------v~r 97 (292)
T PRK11320 26 NAY-HALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFN-------IAR 97 (292)
T ss_pred CHH-HHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHH-------HHH
Confidence 553 356677789988876422 1 2222 22234567788999999999999886 34334432 245
Q ss_pred HHHHHHHcCcceeec-chhh-----------hccchhhhhccccCCchHHHHHHHh-CCCCeEEEEEeccccccCCCCcc
Q 045794 379 VASEYFRSGADKISI-GSDA-----------VYAAEDYLKTGVKTGKSSLEQISRV-YGNQAVVVSIDPRRVYITHPNDV 445 (578)
Q Consensus 379 ~~~~~l~~Ga~~vv~-gt~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~iv~slD~~~~~~~~~~~~ 445 (578)
.++++.++||.-|.| +... +...++++ +-|+.+.+. -+.+.+++ +|...
T Consensus 98 ~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~--------~kI~Aa~~a~~~~d~~Ii---ARTDa------- 159 (292)
T PRK11320 98 TVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMV--------DRIKAAVDARTDPDFVIM---ARTDA------- 159 (292)
T ss_pred HHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHH--------HHHHHHHHhccCCCeEEE---EecCc-------
Confidence 689999999988887 3221 11111121 222222221 13332222 12110
Q ss_pred ccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcE
Q 045794 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPV 525 (578)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipV 525 (578)
....|+. ..++-++.+.+.|++.|.+.... +.+.++++.+.++.|+
T Consensus 160 ---------------------~~~~g~d-----eAI~Ra~aY~eAGAD~ifi~~~~--------~~~~i~~~~~~~~~Pl 205 (292)
T PRK11320 160 ---------------------LAVEGLD-----AAIERAQAYVEAGADMIFPEAMT--------ELEMYRRFADAVKVPI 205 (292)
T ss_pred ---------------------ccccCHH-----HHHHHHHHHHHcCCCEEEecCCC--------CHHHHHHHHHhcCCCE
Confidence 0011211 35778899999999999987643 5789999999888898
Q ss_pred E---EecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 526 I---ASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 526 I---asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
. ..+|-.-.-++.+|.+ .|+.-|+.+...+.
T Consensus 206 ~~n~~~~~~~p~~s~~~L~~-lGv~~v~~~~~~~~ 239 (292)
T PRK11320 206 LANITEFGATPLFTTEELAS-AGVAMVLYPLSAFR 239 (292)
T ss_pred EEEeccCCCCCCCCHHHHHH-cCCcEEEEChHHHH
Confidence 3 3445332234666654 89888887776654
|
|
| >PRK11574 oxidative-stress-resistance chaperone; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.028 Score=54.35 Aligned_cols=86 Identities=9% Similarity=0.127 Sum_probs=54.3
Q ss_pred cEEEEEECC-C--CCHHHHHHHHHHCCCeEEEeCC------c---------------cCC--CCCCEEEECCCCCchHHH
Q 045794 48 SVVTLLDYG-A--GNVRSVRNAIRHLGFGIKDVQT------P---------------EDI--LNANRLIFPGVGAFAAAM 101 (578)
Q Consensus 48 ~~I~vld~~-~--g~~~~i~~~L~~~Gv~v~~v~~------~---------------~dl--~~~DGlILpGGg~~~~~~ 101 (578)
++|+|+=++ . --.....+.|++.|+++.++.. + +++ .++|.|++|||.......
T Consensus 3 ~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~~ 82 (196)
T PRK11574 3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECF 82 (196)
T ss_pred ceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhhh
Confidence 345555432 1 1233456778888877766421 0 112 369999999984222211
Q ss_pred HHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 102 DVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 102 ~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
. ....+.++|+++.+++++|.+||.|-.+|..
T Consensus 83 ~--~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~ 114 (196)
T PRK11574 83 R--DSPLLVETVRQFHRSGRIVAAICAAPATVLV 114 (196)
T ss_pred h--hCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 1 1124788999999999999999999986544
|
|
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.22 Score=48.88 Aligned_cols=177 Identities=21% Similarity=0.217 Sum_probs=116.8
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccCh------HHHHHHHH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSS------LEVASEYF 384 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~------~~~~~~~l 384 (578)
+-+....+.||++|=+-|-=+. +| -.+...+++...+...+|+.+ =||--.- -|.|++ .++++.+.
T Consensus 12 ~~l~~A~~~GAdRiELC~~La~-GG---~TPSyG~~k~a~~~~~ipv~~--MIRPRgG--dFvY~~~E~~iM~~DI~~~~ 83 (241)
T COG3142 12 EGLLAAQAAGADRIELCDALAE-GG---LTPSYGVIKEAVELSKIPVYV--MIRPRGG--DFVYSDDELEIMLEDIRLAR 83 (241)
T ss_pred hhHHHHHHcCCceeehhhcccc-CC---CCCCHHHHHHHHhhcCCceEE--EEecCCC--CcccChHHHHHHHHHHHHHH
Confidence 5556667889999988654332 22 367789999999888888876 3443210 155555 35788888
Q ss_pred HcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
++|++-||+|...-.. .++.+.++++.+.=++=-+.+ | +.||.
T Consensus 84 ~lG~~GVV~G~lt~dg---------~iD~~~le~Li~aA~gL~vTF----------------H---rAFD~--------- 126 (241)
T COG3142 84 ELGVQGVVLGALTADG---------NIDMPRLEKLIEAAGGLGVTF----------------H---RAFDE--------- 126 (241)
T ss_pred HcCCCcEEEeeecCCC---------ccCHHHHHHHHHHccCCceee----------------e---hhhhh---------
Confidence 9999999999766553 345577888876433211222 0 12222
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~ 541 (578)
-.++.+.++++.++|+.+|+-..= ..+-. .++.++++.+.. .+.|+++||| +.+-+..+.
T Consensus 127 ------------~~d~~~ale~li~~Gv~RILTsGg----~~sa~eg~~~l~~li~~a~gri~Im~GaGV-~~~N~~~l~ 189 (241)
T COG3142 127 ------------CPDPLEALEQLIELGVERILTSGG----KASALEGLDLLKRLIEQAKGRIIIMAGAGV-RAENIAELV 189 (241)
T ss_pred ------------cCCHHHHHHHHHHCCCcEEecCCC----cCchhhhHHHHHHHHHHhcCCEEEEeCCCC-CHHHHHHHH
Confidence 125899999999999999984432 22222 467777775544 5677888888 568888886
Q ss_pred HhcCchHH
Q 045794 542 RKTNASAA 549 (578)
Q Consensus 542 ~~~G~~gv 549 (578)
..+|+.-+
T Consensus 190 ~~tg~~e~ 197 (241)
T COG3142 190 LLTGVTEV 197 (241)
T ss_pred HhcCchhh
Confidence 66886654
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.11 Score=53.80 Aligned_cols=205 Identities=14% Similarity=0.134 Sum_probs=117.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEE--ecc----cCCC-CCCCCchhHHHHHHHhhhccccEEEe--CCccccccCCCCccChH
Q 045794 307 GKPVELARQYYKEGADEISFL--NIT----GFRD-FPLGDLPMLQVLRLTSENVFVPLTVG--GGIRDFTDANGRHYSSL 377 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~--Dl~----~~~~-~~~~~~~~~~~i~~i~~~~~~pi~~g--GGir~~~d~~~~~~~~~ 377 (578)
-|+. -|+...+.|++-++.- -.. |..| +.......+..+++|++.+.+||.++ .|-.+..+ ..
T Consensus 24 ~Da~-SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~-------v~ 95 (294)
T TIGR02319 24 YDAL-SAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMS-------VW 95 (294)
T ss_pred cCHH-HHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHH-------HH
Confidence 3553 3677778899988873 222 2222 22334567888999999999999886 34433322 23
Q ss_pred HHHHHHHHcCcceeec-chhhh-----------ccchhhhhccccCCchHHHHHHHhC-CCCeEE-EEEeccccccCCCC
Q 045794 378 EVASEYFRSGADKISI-GSDAV-----------YAAEDYLKTGVKTGKSSLEQISRVY-GNQAVV-VSIDPRRVYITHPN 443 (578)
Q Consensus 378 ~~~~~~l~~Ga~~vv~-gt~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~iv-~slD~~~~~~~~~~ 443 (578)
..++++.++|+.-|.| ....- -..++++ +-|+.+.+.- ..+.++ +=.|.+.
T Consensus 96 r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~--------~kI~Aa~~A~~~~d~~I~ARTDa~~------- 160 (294)
T TIGR02319 96 RATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMT--------GKIEAAVEAREDEDFTIIARTDARE------- 160 (294)
T ss_pred HHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHH--------HHHHHHHHhccCCCeEEEEEecccc-------
Confidence 5689999999988888 32211 1111121 2222222211 112222 2122211
Q ss_pred ccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCC
Q 045794 444 DVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSI 523 (578)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~i 523 (578)
..|+ -..++-++.+.+.|++.|.+... .+.+.++++.+.++.
T Consensus 161 -------------------------~~g~-----deaI~Ra~aY~eAGAD~ifi~~~--------~~~~ei~~~~~~~~~ 202 (294)
T TIGR02319 161 -------------------------SFGL-----DEAIRRSREYVAAGADCIFLEAM--------LDVEEMKRVRDEIDA 202 (294)
T ss_pred -------------------------cCCH-----HHHHHHHHHHHHhCCCEEEecCC--------CCHHHHHHHHHhcCC
Confidence 0111 13577888999999999998753 256889999998888
Q ss_pred cE---EEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCC-CHHHHHHHHHhCC
Q 045794 524 PV---IASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEV-PIQSVKEHLYKEG 573 (578)
Q Consensus 524 pV---IasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~-~~~~~~~~l~~~~ 573 (578)
|+ +..||-.-.-.+.+|.+ .|+.-|+.+..+....+ .+.+..+.|++.|
T Consensus 203 P~~~nv~~~~~~p~~s~~eL~~-lG~~~v~~~~~~~~aa~~a~~~~~~~l~~~G 255 (294)
T TIGR02319 203 PLLANMVEGGKTPWLTTKELES-IGYNLAIYPLSGWMAAASVLRKLFTELREAG 255 (294)
T ss_pred CeeEEEEecCCCCCCCHHHHHH-cCCcEEEEcHHHHHHHHHHHHHHHHHHHHcC
Confidence 87 45554333345777764 89888877765543222 1334444444444
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.19 Score=52.85 Aligned_cols=222 Identities=12% Similarity=0.118 Sum_probs=121.4
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
..+.+..++.++. .|+.+........+...-..+++..+++.. +||.+ .++ |.+++|.+++.+++|.
T Consensus 32 ~avi~AAee~~sP--vIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPVal-----HLD-----Hg~~~e~i~~ai~~Gf 99 (347)
T PRK09196 32 QAIMEAADETDSP--VILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVM-----HQD-----HGNSPATCQRAIQLGF 99 (347)
T ss_pred HHHHHHHHHhCCC--EEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEE-----ECC-----CCCCHHHHHHHHHcCC
Confidence 3455555555665 445554311111222333455666666664 88854 232 5667888999999999
Q ss_pred ceeecchhhhccc---hhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 389 DKISIGSDAVYAA---EDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 389 ~~vv~gt~~~~~~---~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
.-|.+..+.+.+- ..|- .|....+++. ..+| +++-.--|.+-. ..| +..|++.
T Consensus 100 tSVMiDgS~l~~~~~~~p~e-----ENI~~Tkevve~Ah~~G-----v~VEaELG~vgg----------~e~-~~~g~~~ 158 (347)
T PRK09196 100 TSVMMDGSLKADGKTPASYE-----YNVDVTRKVVEMAHACG-----VSVEGELGCLGS----------LET-GMGGEED 158 (347)
T ss_pred CEEEecCCCCcccCCCCCHH-----HHHHHHHHHHHHHHHcC-----CeEEEEEeeccC----------ccc-ccccccc
Confidence 9999955544110 0010 1234444443 4455 233322221100 000 0000000
Q ss_pred ceEEEEEcc--cccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC--------CCHHHHHHHHhhC-CCcEEEecCC
Q 045794 463 AWYQCTVNG--GREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG--------FDMDLIKLISDAV-SIPVIASSGA 531 (578)
Q Consensus 463 ~~~~~~~~g--~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G--------~d~~li~~l~~~~-~ipVIasGGi 531 (578)
.....+ ..+..-.++.+..+-+++-|++.+-+--=+.-|.+.+ .|+++++++.+.+ ++|++.-||=
T Consensus 159 ---~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgS 235 (347)
T PRK09196 159 ---GHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSS 235 (347)
T ss_pred ---CcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCC
Confidence 000000 0011123688888889999999877544455566543 6899999999999 7999999987
Q ss_pred CCH----------------------HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 532 GAV----------------------EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 532 ~s~----------------------eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+.+ |+++++.+ .|+..|=+++-+...- ...+++++.
T Consensus 236 G~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~-~GI~KINi~Tdl~~a~--~~~i~~~~~ 293 (347)
T PRK09196 236 SVPQELLDIINEYGGDMPETYGVPVEEIQEGIK-HGVRKVNIDTDLRLAM--TGAIRRFLA 293 (347)
T ss_pred CCCHHHHHHHHHhcCCccccCCCCHHHHHHHHH-CCCceEEeChHHHHHH--HHHHHHHHH
Confidence 653 66888875 8888877676553221 334445443
|
|
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.011 Score=62.74 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEe--c-ccCC--CCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLN--I-TGFR--DFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~D--l-~~~~--~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+.+++++.+.+.|+|.|++.- . .... .....++.++...+++++.+++||.++|++++.++ ++
T Consensus 224 ~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~-----------a~ 292 (353)
T cd02930 224 EEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEV-----------AE 292 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHH-----------HH
Confidence 3567899999999999998721 1 1110 00111234577788999999999999999999876 99
Q ss_pred HHHHcC-cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 382 EYFRSG-ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 382 ~~l~~G-a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
++++.| +|-|.+|..++.+ |++++++.+
T Consensus 293 ~~i~~g~~D~V~~gR~~l~d------------P~~~~k~~~ 321 (353)
T cd02930 293 RLLADGDADMVSMARPFLAD------------PDFVAKAAA 321 (353)
T ss_pred HHHHCCCCChhHhhHHHHHC------------ccHHHHHHh
Confidence 999987 9999999999985 466677765
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.02 Score=61.91 Aligned_cols=87 Identities=22% Similarity=0.211 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEe--------ccc--C---CCCCCC---CchhHHHHHHHhhhc--cccEEEeCCccccccC
Q 045794 308 KPVELARQYYKEGADEISFLN--------ITG--F---RDFPLG---DLPMLQVLRLTSENV--FVPLTVGGGIRDFTDA 369 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~D--------l~~--~---~~~~~~---~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~ 369 (578)
+..++|+...+.|++.|.+++ +.. . .++..+ +...+++++++.+.+ .+||..-|||.+-+|
T Consensus 277 di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~D- 355 (409)
T PLN02826 277 DLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGED- 355 (409)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHH-
Confidence 788999999999999999987 211 0 011111 234688899998887 699999999999977
Q ss_pred CCCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 370 NGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 370 ~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
+-+.+.+||+-|=++|+.+.+.|.++
T Consensus 356 ----------a~e~i~AGAs~VQv~Ta~~~~Gp~~i 381 (409)
T PLN02826 356 ----------AYKKIRAGASLVQLYTAFAYEGPALI 381 (409)
T ss_pred ----------HHHHHHhCCCeeeecHHHHhcCHHHH
Confidence 89999999999999999988644433
|
|
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.19 Score=47.97 Aligned_cols=194 Identities=12% Similarity=0.090 Sum_probs=118.4
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcccc--EEEeCCccccccCCCCccChHHHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVP--LTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~p--i~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
+.+-.+-++++.++|+||||+==.|+..- .+-.--..+++.+++.++.+ +.+===+.+.++ -+..+
T Consensus 16 fanL~~e~~~~l~~GadwlHlDVMDg~FV--pNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq----------~V~~~ 83 (224)
T KOG3111|consen 16 FANLAAECKKMLDAGADWLHLDVMDGHFV--PNITFGPPVVESLRKHTGADPFFDVHMMVENPEQ----------WVDQM 83 (224)
T ss_pred hHHHHHHHHHHHHcCCCeEEEeeeccccc--CCcccchHHHHHHHhccCCCcceeEEEeecCHHH----------HHHHH
Confidence 45667778888999999999644455321 11111135677777754333 111112345553 57888
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
-.+||+.+-+-.++.++.. ++++++.++ | -++-++| +-
T Consensus 84 a~agas~~tfH~E~~q~~~-----------~lv~~ir~~-G-mk~G~al--kP--------------------------- 121 (224)
T KOG3111|consen 84 AKAGASLFTFHYEATQKPA-----------ELVEKIREK-G-MKVGLAL--KP--------------------------- 121 (224)
T ss_pred HhcCcceEEEEEeeccCHH-----------HHHHHHHHc-C-CeeeEEe--CC---------------------------
Confidence 8999999999988877532 556666543 3 2333333 22
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCH---HHHHHHHhhCCCcEE-EecCCCCHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDM---DLIKLISDAVSIPVI-ASSGAGAVEHFSD 539 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~---~li~~l~~~~~ipVI-asGGi~s~eDi~~ 539 (578)
+ +.++.+..+.+ -++.++++.+.-.=-.+-+-- .-++.+++...-+.| +-||+ +++.+.+
T Consensus 122 -------------g-T~Ve~~~~~~~-~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv-~~~ti~~ 185 (224)
T KOG3111|consen 122 -------------G-TPVEDLEPLAE-HVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGV-GPSTIDK 185 (224)
T ss_pred -------------C-CcHHHHHHhhc-cccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCc-CcchHHH
Confidence 1 22444444444 378899888765322233322 445556666655556 99999 5688999
Q ss_pred HHHhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 540 VFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
+.+ +||+.++.||++.. .-+..++.+.|+.
T Consensus 186 ~a~-AGAN~iVaGsavf~-a~d~~~vi~~lr~ 215 (224)
T KOG3111|consen 186 AAE-AGANMIVAGSAVFG-AADPSDVISLLRN 215 (224)
T ss_pred HHH-cCCCEEEecceeec-CCCHHHHHHHHHH
Confidence 885 99999999999864 4445566665554
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.051 Score=55.84 Aligned_cols=195 Identities=13% Similarity=0.135 Sum_probs=119.7
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhcc--ccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVF--VPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~--~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
..+.+..++.+.+ .|+.+.-..-...+ -..-..+++.++++.. +||.+ .++ |..++|.+++.+++
T Consensus 32 ~avi~AAee~~sP--vIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~l-----HLD-----Hg~~~e~i~~ai~~ 99 (286)
T PRK08610 32 QAILEASQEENAP--VILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAI-----HLD-----HGSSFEKCKEAIDA 99 (286)
T ss_pred HHHHHHHHHHCCC--EEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEE-----ECC-----CCCCHHHHHHHHHc
Confidence 3455555566665 44455421001111 1223456777777765 78864 232 56678889999999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
|..-|.++.+.+.-. .|.+..+++. ..+| +++-.--|.+... .++.
T Consensus 100 GftSVM~DgS~l~~e---------eNi~~T~~vve~Ah~~g-----v~VEaElG~vgg~--------------ed~~--- 148 (286)
T PRK08610 100 GFTSVMIDASHSPFE---------ENVATTKKVVEYAHEKG-----VSVEAELGTVGGQ--------------EDDV--- 148 (286)
T ss_pred CCCEEEEeCCCCCHH---------HHHHHHHHHHHHHHHcC-----CEEEEEEeccCCc--------------cCCC---
Confidence 999999955444311 1334444444 4455 3343322221000 0000
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCH-HHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAV-EHFSD 539 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~-eDi~~ 539 (578)
. .....-.++.+..+-+++-|++.+-+--=+.-|.++| .|+++++++.+.+++|++.-||-+.+ +++++
T Consensus 149 ------~-~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ 221 (286)
T PRK08610 149 ------V-ADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQK 221 (286)
T ss_pred ------C-CcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHH
Confidence 0 0011124688888888889999887665567777766 48999999999999999999999888 56777
Q ss_pred HHHhcCchHHhhhhhh
Q 045794 540 VFRKTNASAALAAGIF 555 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~ 555 (578)
+.+ .|+..+=+++.+
T Consensus 222 ai~-~GI~KiNi~T~l 236 (286)
T PRK08610 222 AIP-FGTAKINVNTEN 236 (286)
T ss_pred HHH-CCCeEEEeccHH
Confidence 774 898888777765
|
|
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.029 Score=57.40 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
.+-++++.+.|++.|.+ | .+..+.++++.+.. ++|+.++||| +++.+.++.+ +|+|++++|+..|+-
T Consensus 199 leea~eA~~~gaD~I~L-D--------~~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~-tGvD~Isvg~lt~s~ 267 (277)
T PRK05742 199 LDELRQALAAGADIVML-D--------ELSLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAE-TGVDYISIGAMTKDV 267 (277)
T ss_pred HHHHHHHHHcCCCEEEE-C--------CCCHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHH-cCCCEEEEChhhcCC
Confidence 55677778999998866 3 23556777776655 7899999999 7899999985 999999999999875
Q ss_pred C
Q 045794 559 E 559 (578)
Q Consensus 559 ~ 559 (578)
+
T Consensus 268 ~ 268 (277)
T PRK05742 268 K 268 (277)
T ss_pred c
Confidence 4
|
|
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.032 Score=56.87 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCC--CcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVS--IPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~--ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
++-++++.+.|++.|.+-. +..+.++++.+... +|+.++||| +.+.+.++.+ +|++++.+|..+|..
T Consensus 188 ~eea~~A~~~gaDyI~ld~---------~~~e~lk~~v~~~~~~ipi~AsGGI-~~~ni~~~a~-~Gvd~Isvgait~sa 256 (265)
T TIGR00078 188 LEEAEEAAEAGADIIMLDN---------MKPEEIKEAVQLLKGRVLLEASGGI-TLDNLEEYAE-TGVDVISSGALTHSV 256 (265)
T ss_pred HHHHHHHHHcCCCEEEECC---------CCHHHHHHHHHHhcCCCcEEEECCC-CHHHHHHHHH-cCCCEEEeCHHHcCC
Confidence 4567778899999887733 23466777666543 899999999 7899999985 999999998888844
Q ss_pred C
Q 045794 559 E 559 (578)
Q Consensus 559 ~ 559 (578)
+
T Consensus 257 ~ 257 (265)
T TIGR00078 257 P 257 (265)
T ss_pred C
Confidence 3
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.027 Score=55.45 Aligned_cols=79 Identities=24% Similarity=0.271 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.|| -+|+++.+.|+.-++-. -+--+.. ..-.|...|+.|.++.++||.+++||.+..| +....++
T Consensus 132 ~D~-v~akrL~d~GcaavMPl--gsPIGSg-~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSd-----------aa~AMEl 196 (247)
T PF05690_consen 132 DDP-VLAKRLEDAGCAAVMPL--GSPIGSG-RGIQNPYNLRIIIERADVPVIVDAGIGTPSD-----------AAQAMEL 196 (247)
T ss_dssp S-H-HHHHHHHHTT-SEBEEB--SSSTTT----SSTHHHHHHHHHHGSSSBEEES---SHHH-----------HHHHHHT
T ss_pred CCH-HHHHHHHHCCCCEEEec--ccccccC-cCCCCHHHHHHHHHhcCCcEEEeCCCCCHHH-----------HHHHHHc
Confidence 566 68999999999877653 2211211 1235667788888888999999999999987 9999999
Q ss_pred Ccceeecchhhhcc
Q 045794 387 GADKISIGSDAVYA 400 (578)
Q Consensus 387 Ga~~vv~gt~~~~~ 400 (578)
|+|-|.++|+....
T Consensus 197 G~daVLvNTAiA~A 210 (247)
T PF05690_consen 197 GADAVLVNTAIAKA 210 (247)
T ss_dssp T-SEEEESHHHHTS
T ss_pred CCceeehhhHHhcc
Confidence 99999999987763
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.017 Score=61.04 Aligned_cols=95 Identities=17% Similarity=0.096 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCC--CCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFR--DFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~--~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+.+++++.+.+.|+|.|++-- -... ......+.+.+..+++.+.+++||.+.|+|++.++ +++++
T Consensus 227 ~e~~~i~~~l~~~gvD~i~vs~-g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~-----------a~~~l 294 (337)
T PRK13523 227 QDYVQYAKWMKEQGVDLIDVSS-GAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQ-----------AEEIL 294 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEeCC-CCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHH-----------HHHHH
Confidence 4677899999999999888631 1100 00001234678888998889999999999999865 99999
Q ss_pred HcC-cceeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 385 RSG-ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 385 ~~G-a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
+.| +|-|.+|..++.| |++.+++.+..+.
T Consensus 295 ~~g~~D~V~~gR~~iad------------P~~~~k~~~~~~~ 324 (337)
T PRK13523 295 QNNRADLIFIGRELLRN------------PYFPRIAAKELGF 324 (337)
T ss_pred HcCCCChHHhhHHHHhC------------ccHHHHHHHHcCC
Confidence 987 9999999999985 4677888877754
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.021 Score=59.49 Aligned_cols=101 Identities=18% Similarity=0.214 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+-+++|+...+.|++.+.|===.+.+.+......+.+.|+.+.+.+. +|+.+-|+|.+.+| +.+.++
T Consensus 155 ~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d-----------~~~~~~ 223 (358)
T KOG2335|consen 155 EKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLED-----------VERCLK 223 (358)
T ss_pred HHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHH-----------HHHHHH
Confidence 356689999999999988874333322222233678999999999987 99999999999977 888887
Q ss_pred -cCcceeecchhhhccchhhh--hccccCCchHHHHH
Q 045794 386 -SGADKISIGSDAVYAAEDYL--KTGVKTGKSSLEQI 419 (578)
Q Consensus 386 -~Ga~~vv~gt~~~~~~~~~~--~~~~~~~~~~l~~~ 419 (578)
.||+.|..+-.++.|| ..+ .+..++..+.+++.
T Consensus 224 ~tG~dGVM~arglL~NP-a~F~~~~~~~~~~~~~~~~ 259 (358)
T KOG2335|consen 224 YTGADGVMSARGLLYNP-ALFLTAGYGPTPWGCVEEY 259 (358)
T ss_pred HhCCceEEecchhhcCc-hhhccCCCCCCHHHHHHHH
Confidence 8999999999999964 444 33444555555554
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.021 Score=59.85 Aligned_cols=92 Identities=10% Similarity=0.118 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCC------CchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLG------DLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEV 379 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~------~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~ 379 (578)
.+.+++++.+.+.|++.|.+==-.+...+..+ ...+.+.|+++++.+ .+||..-|||++.+|
T Consensus 141 ~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~d----------- 209 (318)
T TIGR00742 141 EFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQ----------- 209 (318)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHH-----------
Confidence 35678999999999997643211110111111 123678899998887 899999999999977
Q ss_pred HHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHh
Q 045794 380 ASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRV 422 (578)
Q Consensus 380 ~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (578)
+++.++ |||.|.+|..++.+ |-++.++.+.
T Consensus 210 a~~~l~-g~dgVMigRgal~n------------P~if~~~~~~ 239 (318)
T TIGR00742 210 IKQHLS-HVDGVMVGREAYEN------------PYLLANVDRE 239 (318)
T ss_pred HHHHHh-CCCEEEECHHHHhC------------CHHHHHHHHH
Confidence 888886 99999999999995 3566777653
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0097 Score=55.91 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=39.1
Q ss_pred cCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 81 EDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 81 ~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.+..++|.||+|||... .. ......+.+++++..+++.+|.+||.|..+|+++
T Consensus 57 ~~~~~~D~lvvpg~~~~-~~--~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 57 DDAPDFDILVVPGGPGF-DA--AAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp CCCSCCSEEEEE-STTH-HH--HTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred hhcccCCEEEeCCCCCc-hh--cccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 34678999999998751 11 1112256788888888999999999999999993
|
... |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.024 Score=60.24 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+-++.+.+.|++.|++-+-..-....++ -++.+.++++.+ .+|||++|||++-.|+.+++. +||++|.+|+.+..
T Consensus 235 ~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALA-LGA~aV~iGr~~l~ 313 (367)
T PLN02493 235 GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVF 313 (367)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 67888999999999987664321111122 367777777665 499999999999999999995 99999999998763
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.031 Score=54.47 Aligned_cols=80 Identities=21% Similarity=0.208 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-----ccEEEeCCccccccCCCCccChHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-----VPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-----~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+|.+.++.+. .+++.+++.=.+....+..-....++.++++++.++ +|+.++|||+. + ++++
T Consensus 115 t~~e~~~~~~-~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~-e-----------nv~~ 181 (210)
T TIGR01163 115 TPLEFLEYVL-PDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVND-D-----------NARE 181 (210)
T ss_pred CCHHHHHHHH-hhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCH-H-----------HHHH
Confidence 5567777764 468887764333211111111334455566655433 78999999975 4 4999
Q ss_pred HHHcCcceeecchhhhcc
Q 045794 383 YFRSGADKISIGSDAVYA 400 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~ 400 (578)
+++.|||.+++||+.+..
T Consensus 182 l~~~gad~iivgsai~~~ 199 (210)
T TIGR01163 182 LAEAGADILVAGSAIFGA 199 (210)
T ss_pred HHHcCCCEEEEChHHhCC
Confidence 999999999999999863
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.41 Score=47.09 Aligned_cols=186 Identities=18% Similarity=0.141 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH-c
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR-S 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~-~ 386 (578)
++ +-|+...+.|+|.+=++ +... ..|-...+..++|.+.+. +.+.. |-+|.-++.+.+.++++ .
T Consensus 12 ~~-eda~~~~~~Gad~iGfI-~~~~----S~R~V~~~~a~~i~~~~~------~~i~~---VgVf~~~~~~~i~~~~~~~ 76 (210)
T PRK01222 12 TP-EDAEAAAELGADAIGFV-FYPK----SPRYVSPEQAAELAAALP------PFVKV---VGVFVNASDEEIDEIVETV 76 (210)
T ss_pred cH-HHHHHHHHcCCCEEEEc-cCCC----CCCcCCHHHHHHHHHhCC------CCCCE---EEEEeCCCHHHHHHHHHhc
Confidence 44 44677778999999887 3321 123455777888887653 11222 22344456777877764 4
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
+.+.|=+-.. . .++.++.+.+.++ -+|+-++.+...
T Consensus 77 ~~d~vQLHg~--e------------~~~~~~~l~~~~~-~~iik~i~v~~~----------------------------- 112 (210)
T PRK01222 77 PLDLLQLHGD--E------------TPEFCRQLKRRYG-LPVIKALRVRSA----------------------------- 112 (210)
T ss_pred CCCEEEECCC--C------------CHHHHHHHHhhcC-CcEEEEEecCCH-----------------------------
Confidence 6666655221 1 1355677776665 346655543220
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCC---CCCCCCCCHHHH-HHHHhhCCCcEEEecCCCCHHHHHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDC---DGQGKGFDMDLI-KLISDAVSIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~---dG~~~G~d~~li-~~l~~~~~ipVIasGGi~s~eDi~~l~~ 542 (578)
. + +..+.++. ..++.++ +|... .|+..-+||+.+ +.+ ..|++.+||+ +++.+.++.+
T Consensus 113 ----------~-~-l~~~~~~~-~~~d~~L-~Ds~~~~~GGtG~~~dw~~l~~~~----~~p~~LAGGi-~peNv~~ai~ 173 (210)
T PRK01222 113 ----------G-D-LEAAAAYY-GDADGLL-LDAYVGLPGGTGKTFDWSLLPAGL----AKPWILAGGL-NPDNVAEAIR 173 (210)
T ss_pred ----------H-H-HHHHHhhh-ccCCEEE-EcCCCCCCCCCCCccchHHhhhcc----CCCEEEECCC-CHHHHHHHHH
Confidence 0 1 11122221 1356555 55322 456666799887 333 5699999999 7899999887
Q ss_pred hcCchHHhhhhhhcc--CCCCHHHHHHHHHh
Q 045794 543 KTNASAALAAGIFHR--KEVPIQSVKEHLYK 571 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~--~~~~~~~~~~~l~~ 571 (578)
..+.+|+=+.|.+-. |.-++..+++++..
T Consensus 174 ~~~p~gvDvsSgvE~~~G~KD~~ki~~f~~~ 204 (210)
T PRK01222 174 QVRPYGVDVSSGVESAPGIKDPEKIRAFIEA 204 (210)
T ss_pred hcCCCEEEecCceECCCCCcCHHHHHHHHHH
Confidence 568888888888864 66778888877764
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.018 Score=58.88 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCCCCCCH-HHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 482 ELAKAVEDLGAGEILLNCIDCDGQGKGFDM-DLIKLISDA-VSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 482 e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~-~li~~l~~~-~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
+-+.++.+.|++.|.+=.+..+ ++ ++++.+++. .++|++++||| +++.+.++.+ +|++++++++.+|...
T Consensus 194 eea~~A~~~gaD~I~ld~~~p~------~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~-~Gvd~I~vsai~~a~~ 265 (272)
T cd01573 194 EEALAAAEAGADILQLDKFSPE------ELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAA-AGADILVTSAPYYAKP 265 (272)
T ss_pred HHHHHHHHcCCCEEEECCCCHH------HHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHH-cCCcEEEEChhhcCcc
Confidence 4455566899998876554332 22 233334333 26899999999 8899999985 9999998888877555
Q ss_pred CCH
Q 045794 560 VPI 562 (578)
Q Consensus 560 ~~~ 562 (578)
.++
T Consensus 266 ~D~ 268 (272)
T cd01573 266 ADI 268 (272)
T ss_pred cce
Confidence 443
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.015 Score=61.25 Aligned_cols=80 Identities=24% Similarity=0.303 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCC-Cc-hhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLG-DL-PMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~-~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
+++ +.|+...+.|+|-|++-=-++ +||.+ .. ..+.++.++.+.+.+||.+.|||.+-++ +..++
T Consensus 144 ~s~-~~A~~a~~~G~D~iv~qG~eA--GGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~-----------iaaal 209 (330)
T PF03060_consen 144 TSV-REARKAAKAGADAIVAQGPEA--GGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRG-----------IAAAL 209 (330)
T ss_dssp SSH-HHHHHHHHTT-SEEEEE-TTS--SEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHH-----------HHHHH
T ss_pred CCH-HHHHHhhhcCCCEEEEecccc--CCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHH-----------HHHHH
Confidence 455 447788899999888775554 45555 22 4788999999999999999999999866 99999
Q ss_pred HcCcceeecchhhhcc
Q 045794 385 RSGADKISIGSDAVYA 400 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~ 400 (578)
.+||+-|.+||..+--
T Consensus 210 ~lGA~gV~~GTrFl~t 225 (330)
T PF03060_consen 210 ALGADGVQMGTRFLAT 225 (330)
T ss_dssp HCT-SEEEESHHHHTS
T ss_pred HcCCCEeecCCeEEec
Confidence 9999999999988764
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.016 Score=61.56 Aligned_cols=104 Identities=23% Similarity=0.287 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+.+++++.+.+.|++.|++---............+...++.+.+.+ ++||.+-|||++.++ +++++
T Consensus 235 ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~-----------ae~~l 303 (353)
T cd04735 235 EDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDD-----------ALEAL 303 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHH-----------HHHHH
Confidence 36688999999999999987431111000001112345556666555 789999999999876 99999
Q ss_pred HcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEec
Q 045794 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDP 434 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~ 434 (578)
+.|+|-|.+|...+.+ |++.+++.+-- ...|.-+|+.
T Consensus 304 ~~gaD~V~~gR~liad------------Pdl~~k~~~G~-~~~ir~ci~~ 340 (353)
T cd04735 304 ETGADLVAIGRGLLVD------------PDWVEKIKEGR-EDEINLEIDP 340 (353)
T ss_pred HcCCChHHHhHHHHhC------------ccHHHHHHcCC-hhhhhhcCCH
Confidence 9999999999999985 36667776422 1335555553
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.028 Score=57.44 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC----CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 482 ELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV----SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 482 e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~----~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+-+.++.+.|++.|.+-.+. .+.++++.+.. ++|+.++||| +++.+.++.+ +|++++++|+.+|.
T Consensus 192 eea~~A~~~gaD~I~ld~~~---------~e~l~~~v~~i~~~~~i~i~asGGI-t~~ni~~~a~-~Gad~Isvgal~~s 260 (269)
T cd01568 192 EEAEEALEAGADIIMLDNMS---------PEELKEAVKLLKGLPRVLLEASGGI-TLENIRAYAE-TGVDVISTGALTHS 260 (269)
T ss_pred HHHHHHHHcCCCEEEECCCC---------HHHHHHHHHHhccCCCeEEEEECCC-CHHHHHHHHH-cCCCEEEEcHHHcC
Confidence 44556667899999884433 35555554444 7899999999 7899999985 99999999988887
Q ss_pred C
Q 045794 558 K 558 (578)
Q Consensus 558 ~ 558 (578)
.
T Consensus 261 ~ 261 (269)
T cd01568 261 A 261 (269)
T ss_pred C
Confidence 6
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.011 Score=62.32 Aligned_cols=82 Identities=24% Similarity=0.239 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecc----cC--------CCCCCC---CchhHHHHHHHhhhc--cccEEEeCCccccccCC
Q 045794 308 KPVELARQYYKEGADEISFLNIT----GF--------RDFPLG---DLPMLQVLRLTSENV--FVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~----~~--------~~~~~~---~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~ 370 (578)
++.++|+...+.|++.|.+++-- .. .++..+ +...++.++++.+.+ .+||..-|||.+.+|
T Consensus 225 ~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~d-- 302 (335)
T TIGR01036 225 DLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQD-- 302 (335)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHH--
Confidence 68899999999999999988621 11 011101 124567788888776 589988899999977
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+.+++.+||+-|-++|+.+.+
T Consensus 303 ---------a~e~l~aGA~~Vqv~ta~~~~ 323 (335)
T TIGR01036 303 ---------ALEKIRAGASLLQIYSGFIYW 323 (335)
T ss_pred ---------HHHHHHcCCcHHHhhHHHHHh
Confidence 999999999999999999885
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.063 Score=57.11 Aligned_cols=159 Identities=16% Similarity=0.071 Sum_probs=107.0
Q ss_pred ccEEEeCCccccccCCCCccChHHHHHHHHHcCcc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEE
Q 045794 355 VPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSI 432 (578)
Q Consensus 355 ~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~sl 432 (578)
+|+...+|+.+.++ ..+.++++.+.|.. |+=+|....+. ..+.++.+.+.+|++ +.+.+
T Consensus 131 v~~y~s~~~~~~~~-------~~~~a~~~~~~Gf~~~KiKvg~~~~~~-----------d~~~v~air~~~g~~-~~l~v 191 (355)
T cd03321 131 VQAYDSHGLDGAKL-------ATERAVTAAEEGFHAVKTKIGYPTADE-----------DLAVVRSIRQAVGDG-VGLMV 191 (355)
T ss_pred eeEEEeCCCChHHH-------HHHHHHHHHHhhhHHHhhhcCCCChHh-----------HHHHHHHHHHhhCCC-CEEEE
Confidence 55554445544332 24567777777854 44455422222 137789999999974 77778
Q ss_pred eccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHH
Q 045794 433 DPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMD 512 (578)
Q Consensus 433 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~ 512 (578)
|+.. +|... ...++++.++++++..|= .-..--|++
T Consensus 192 DaN~----------------------------------~~~~~---~A~~~~~~l~~~~i~~iE-------eP~~~~d~~ 227 (355)
T cd03321 192 DYNQ----------------------------------SLTVP---EAIERGQALDQEGLTWIE-------EPTLQHDYE 227 (355)
T ss_pred eCCC----------------------------------CcCHH---HHHHHHHHHHcCCCCEEE-------CCCCCcCHH
Confidence 8632 23221 467888888888763321 112224889
Q ss_pred HHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 513 LIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 513 li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.++++++.+++||.+.-.+.++.+++++.+...++.+.+--....|-....++.+.....|+++
T Consensus 228 ~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~ 291 (355)
T cd03321 228 GHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPM 291 (355)
T ss_pred HHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCee
Confidence 9999999999999988888999999999875556666554455556666778888889889876
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.013 Score=56.21 Aligned_cols=50 Identities=18% Similarity=0.047 Sum_probs=39.4
Q ss_pred CCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 82 DILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 82 dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
+..++|.||+|||.... . .....+.++++++.++++.|.++|-|..+|+.
T Consensus 61 ~~~~~D~liipgg~~~~--~--~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~ 110 (185)
T cd03136 61 DAPPLDYLFVVGGLGAR--R--AVTPALLAWLRRAARRGVALGGIDTGAFLLAR 110 (185)
T ss_pred ccCCCCEEEEeCCCCcc--c--cCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHH
Confidence 45689999999974322 1 12235788999999999999999999999998
|
A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee |
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.055 Score=57.50 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=99.6
Q ss_pred HHHHHHHHHcCcceee--cchhhhc-cchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeec
Q 045794 377 LEVASEYFRSGADKIS--IGSDAVY-AAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVT 453 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv--~gt~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~ 453 (578)
.+.++++.+.|.+.+= +|..... +..++ ..+.++.+.+.+|++ +.+.+|+..
T Consensus 144 ~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~-------d~~~v~~ir~~~g~~-~~l~vDaN~----------------- 198 (357)
T cd03316 144 AEEAKRAVAEGFTAVKLKVGGPDSGGEDLRE-------DLARVRAVREAVGPD-VDLMVDANG----------------- 198 (357)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCcchHHHHH-------HHHHHHHHHHhhCCC-CEEEEECCC-----------------
Confidence 4567788888987543 3432200 00011 137789999999865 677888632
Q ss_pred cCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCC
Q 045794 454 DLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533 (578)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s 533 (578)
+|.. -+..++++.++++++..+ +.-..-.|++.++++++.+++||++...+.+
T Consensus 199 -----------------~~~~---~~a~~~~~~l~~~~i~~i-------EqP~~~~~~~~~~~l~~~~~ipi~~dE~~~~ 251 (357)
T cd03316 199 -----------------RWDL---AEAIRLARALEEYDLFWF-------EEPVPPDDLEGLARLRQATSVPIAAGENLYT 251 (357)
T ss_pred -----------------CCCH---HHHHHHHHHhCccCCCeE-------cCCCCccCHHHHHHHHHhCCCCEEecccccc
Confidence 2321 135677777777765432 1112223789999999999999999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
++|+.++++...++.+.+--....|-....++.+.+++.|+++
T Consensus 252 ~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~ 294 (357)
T cd03316 252 RWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRV 294 (357)
T ss_pred HHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeE
Confidence 9999999975567777655455556666778888889889876
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.023 Score=60.20 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHcC-CCeEEEEecc--c-------CCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccCh
Q 045794 307 GKPVELARQYYKEG-ADEISFLNIT--G-------FRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSS 376 (578)
Q Consensus 307 ~~p~~~a~~~~~~g-~~~i~~~Dl~--~-------~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~ 376 (578)
.+.+++|+.+.+.| +|.|++--=. . ........+.+.+.++++.+.+++||.+.|+|++.++
T Consensus 228 ~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~-------- 299 (343)
T cd04734 228 DEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAE-------- 299 (343)
T ss_pred HHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHH--------
Confidence 46789999999998 8988873110 0 0000112244678888888888999999999999876
Q ss_pred HHHHHHHHHcC-cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 377 LEVASEYFRSG-ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 377 ~~~~~~~l~~G-a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
++++++.| +|-|.+|..++.+ |++.+++.+
T Consensus 300 ---~~~~l~~~~~D~V~~gR~~lad------------P~l~~k~~~ 330 (343)
T cd04734 300 ---AEQALAAGHADMVGMTRAHIAD------------PHLVAKARE 330 (343)
T ss_pred ---HHHHHHcCCCCeeeecHHhHhC------------ccHHHHHHc
Confidence 89999876 9999999999985 466677754
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.23 Score=50.02 Aligned_cols=191 Identities=18% Similarity=0.207 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEecc-----cCCCC-CCCCchhHHHHHHHhhhccccEEEeCCcc--ccccCCCCccChHHH
Q 045794 308 KPVELARQYYKEGADEISFLNIT-----GFRDF-PLGDLPMLQVLRLTSENVFVPLTVGGGIR--DFTDANGRHYSSLEV 379 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~-----~~~~~-~~~~~~~~~~i~~i~~~~~~pi~~gGGir--~~~d~~~~~~~~~~~ 379 (578)
|+ --|+.+.+.|++-+++-+.. +..|. .......+..++.|.+.+.+|+.+++-.. +.++ -.+.
T Consensus 18 D~-~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~-------~~~~ 89 (243)
T cd00377 18 DA-LSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALN-------VART 89 (243)
T ss_pred CH-HHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHH-------HHHH
Confidence 44 35777888899999987763 21221 11234567778888888899998874432 2222 3466
Q ss_pred HHHHHHcCcceeec--------chh----hhccchhhhhccccCCchHHHHHHHhCCC--Ce-EEEEEeccccccCCCCc
Q 045794 380 ASEYFRSGADKISI--------GSD----AVYAAEDYLKTGVKTGKSSLEQISRVYGN--QA-VVVSIDPRRVYITHPND 444 (578)
Q Consensus 380 ~~~~l~~Ga~~vv~--------gt~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~-iv~slD~~~~~~~~~~~ 444 (578)
++++.+.|++-|.| +.. .+-..++++ +.++.+.+.... +. |++-.|....
T Consensus 90 v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~--------~ki~aa~~a~~~~~~~~IiARTDa~~~------- 154 (243)
T cd00377 90 VRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFV--------AKIKAARDARDDLPDFVIIARTDALLA------- 154 (243)
T ss_pred HHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHH--------HHHHHHHHHHhccCCeEEEEEcCchhc-------
Confidence 88899999999998 210 111122232 344444443322 22 2232332210
Q ss_pred cccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCc
Q 045794 445 VEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIP 524 (578)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ip 524 (578)
| ..+ --+.++-++.+.+.|++.+.+.... +.+.++++.+..+.|
T Consensus 155 --------------~----------~~~----~~eai~Ra~ay~~AGAD~v~v~~~~--------~~~~~~~~~~~~~~P 198 (243)
T cd00377 155 --------------G----------EEG----LDEAIERAKAYAEAGADGIFVEGLK--------DPEEIRAFAEAPDVP 198 (243)
T ss_pred --------------c----------CCC----HHHHHHHHHHHHHcCCCEEEeCCCC--------CHHHHHHHHhcCCCC
Confidence 0 001 1146889999999999999988764 679999999999999
Q ss_pred EEEecCCCC-HHHHHHHHHhcCchHHhhhhhhccC
Q 045794 525 VIASSGAGA-VEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 525 VIasGGi~s-~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
|++.-.-.. .-.+.++.+ .|+.-++.+..++..
T Consensus 199 l~~~~~~~~~~~~~~~l~~-lG~~~v~~~~~~~~~ 232 (243)
T cd00377 199 LNVNMTPGGNLLTVAELAE-LGVRRVSYGLALLRA 232 (243)
T ss_pred EEEEecCCCCCCCHHHHHH-CCCeEEEEChHHHHH
Confidence 977532111 134556654 799988888766543
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.021 Score=59.89 Aligned_cols=80 Identities=29% Similarity=0.443 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHHHH-
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEYFR- 385 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~- 385 (578)
...++|+..++.|++.++|===.+.+.. .+ ..+.+.|+++.+.+. +||..-|+|.|.+| +++.++
T Consensus 153 ~~~~ia~~~~~~g~~~ltVHgRtr~~~y-~~-~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~-----------a~~~l~~ 219 (323)
T COG0042 153 LALEIARILEDAGADALTVHGRTRAQGY-LG-PADWDYIKELKEAVPSIPVIANGDIKSLED-----------AKEMLEY 219 (323)
T ss_pred cHHHHHHHHHhcCCCEEEEecccHHhcC-CC-ccCHHHHHHHHHhCCCCeEEeCCCcCCHHH-----------HHHHHHh
Confidence 5789999999999998885322232221 22 478999999999998 99999999999977 888887
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
.|+|.|.+|-.++.+
T Consensus 220 tg~DgVMigRga~~n 234 (323)
T COG0042 220 TGADGVMIGRGALGN 234 (323)
T ss_pred hCCCEEEEcHHHccC
Confidence 479999999999985
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.033 Score=55.47 Aligned_cols=79 Identities=24% Similarity=0.299 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.|| -+|+++.+.||.-++-. -+--+...+ -.|...|+-|.+...+||.+|+||.+.+| +...+++
T Consensus 146 ~D~-v~a~rLed~Gc~aVMPl--gsPIGSg~G-l~n~~~l~~i~e~~~vpVivdAGIgt~sD-----------a~~AmEl 210 (267)
T CHL00162 146 ADP-MLAKHLEDIGCATVMPL--GSPIGSGQG-LQNLLNLQIIIENAKIPVIIDAGIGTPSE-----------ASQAMEL 210 (267)
T ss_pred CCH-HHHHHHHHcCCeEEeec--cCcccCCCC-CCCHHHHHHHHHcCCCcEEEeCCcCCHHH-----------HHHHHHc
Confidence 566 68999999999877643 221111111 34667777788888899999999999987 9999999
Q ss_pred Ccceeecchhhhcc
Q 045794 387 GADKISIGSDAVYA 400 (578)
Q Consensus 387 Ga~~vv~gt~~~~~ 400 (578)
|+|-|-++|...+.
T Consensus 211 GaDgVL~nSaIakA 224 (267)
T CHL00162 211 GASGVLLNTAVAQA 224 (267)
T ss_pred CCCEEeecceeecC
Confidence 99999999988864
|
|
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.11 Score=53.98 Aligned_cols=176 Identities=12% Similarity=0.186 Sum_probs=108.8
Q ss_pred HHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHH--
Q 045794 344 QVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQI-- 419 (578)
Q Consensus 344 ~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~-- 419 (578)
..++..+++. .+||.+ .++ |..++|.+++.+++|.+-|.++.+.+.-.+ |.+..+++
T Consensus 73 ~~~~~~a~~a~~~VPV~l-----HLD-----Hg~~~e~i~~ai~~GftSVMiD~S~lp~ee---------NI~~T~evv~ 133 (321)
T PRK07084 73 QGAVEYAKELGCPIPIVL-----HLD-----HGDSFELCKDCIDSGFSSVMIDGSHLPYEE---------NVALTKKVVE 133 (321)
T ss_pred HHHHHHHHHcCCCCcEEE-----ECC-----CCCCHHHHHHHHHcCCCEEEeeCCCCCHHH---------HHHHHHHHHH
Confidence 3345566655 688754 222 456678899999999999999655443111 23444443
Q ss_pred -HHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe
Q 045794 420 -SRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN 498 (578)
Q Consensus 420 -~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t 498 (578)
+..+| +++-.--|.+.. . .++ +. .....-.++.+..+-+++-|++.+-+-
T Consensus 134 ~Ah~~G-----vsVEaElG~igg----------~----ed~---------~~-~~~~~~T~peeA~~Fv~~TgvD~LAva 184 (321)
T PRK07084 134 YAHQFD-----VTVEGELGVLAG----------V----EDE---------VS-AEHHTYTQPEEVEDFVKKTGVDSLAIS 184 (321)
T ss_pred HHHHcC-----CeEEEEEeeecC----------c----cCC---------cc-CcccccCCHHHHHHHHHHhCCCEEeec
Confidence 44566 344332221100 0 000 00 001113367888888888999988765
Q ss_pred ccCCCCCCCC--------CCHHHHHHHHhhC-CCcEEEecCCCCH----------------------HHHHHHHHhcCch
Q 045794 499 CIDCDGQGKG--------FDMDLIKLISDAV-SIPVIASSGAGAV----------------------EHFSDVFRKTNAS 547 (578)
Q Consensus 499 di~~dG~~~G--------~d~~li~~l~~~~-~ipVIasGGi~s~----------------------eDi~~l~~~~G~~ 547 (578)
-=+.-|.+.+ .|+++++++.+.+ ++|++.-||=+.+ |+++++.+ .|+.
T Consensus 185 iGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~-~GI~ 263 (321)
T PRK07084 185 IGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAK-SAVC 263 (321)
T ss_pred cccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHH-cCCc
Confidence 5556666654 6999999999999 7999999987443 78888885 8988
Q ss_pred HHhhhhhhccCCCCHHHHHHHHH
Q 045794 548 AALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 548 gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.|=+++-+...- ...++++|.
T Consensus 264 KINi~Tdl~~a~--~~~~~~~l~ 284 (321)
T PRK07084 264 KINIDSDGRLAM--TAAIRKVFD 284 (321)
T ss_pred eeccchHHHHHH--HHHHHHHHH
Confidence 887777553222 344555553
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.035 Score=54.60 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc-----ccEEEeCCccccccCCCCccChHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF-----VPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-----~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
++.+.++.+.+ +++.+++.=+.....+..-....++.++++++.++ .+|+++|||+. ++ +++
T Consensus 120 t~~e~~~~~~~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~n-----------v~~ 186 (220)
T PRK05581 120 TPLEPLEDVLD-LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DN-----------IKE 186 (220)
T ss_pred CCHHHHHHHHh-hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HH-----------HHH
Confidence 45677777643 47877664332211111112233455555554332 44789999999 44 999
Q ss_pred HHHcCcceeecchhhhcc
Q 045794 383 YFRSGADKISIGSDAVYA 400 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~ 400 (578)
+.+.|+|.|++||+.+++
T Consensus 187 l~~~GaD~vvvgSai~~~ 204 (220)
T PRK05581 187 CAEAGADVFVAGSAVFGA 204 (220)
T ss_pred HHHcCCCEEEEChhhhCC
Confidence 999999999999999974
|
|
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.31 Score=49.73 Aligned_cols=196 Identities=15% Similarity=0.139 Sum_probs=117.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecc-cCC-CCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNIT-GFR-DFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~-~~~-~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
..-.++|+.+.+.|+..+-.---+ ++. .+..+ ...-++.+++++++.++|+.. =+.+.+ .++.+
T Consensus 41 ~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~t--e~~d~~-----------~~~~l 107 (266)
T PRK13398 41 EQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVT--EVMDTR-----------DVEEV 107 (266)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEE--eeCChh-----------hHHHH
Confidence 355789999999999844333221 211 01010 134578889999999999864 344443 37777
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.+. ++.+-||+...++ .+++++++ +.|. -|++ +++
T Consensus 108 ~~~-vd~~kIga~~~~n------------~~LL~~~a-~~gk-PV~l----k~G-------------------------- 142 (266)
T PRK13398 108 ADY-ADMLQIGSRNMQN------------FELLKEVG-KTKK-PILL----KRG-------------------------- 142 (266)
T ss_pred HHh-CCEEEECcccccC------------HHHHHHHh-cCCC-cEEE----eCC--------------------------
Confidence 777 8999999988774 47788885 4442 1222 221
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC-----CCHHHHHHHHhhCCCcEEE-ecCCCC----
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG-----FDMDLIKLISDAVSIPVIA-SSGAGA---- 533 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G-----~d~~li~~l~~~~~ipVIa-sGGi~s---- 533 (578)
...+--+....++.+.+.|-..+++.....- +..+ .|+..+..+++.+..||++ +.-...
T Consensus 143 ---------~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~-t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~ 212 (266)
T PRK13398 143 ---------MSATLEEWLYAAEYIMSEGNENVVLCERGIR-TFETYTRNTLDLAAVAVIKELSHLPIIVDPSHATGRREL 212 (266)
T ss_pred ---------CCCCHHHHHHHHHHHHhcCCCeEEEEECCCC-CCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcccchhh
Confidence 0101113455666777888877776554110 1222 2677888888888999999 443333
Q ss_pred -HHHHHHHHHhcCchHHhhhhhh--------ccCCCCHHHHHHHHHh
Q 045794 534 -VEHFSDVFRKTNASAALAAGIF--------HRKEVPIQSVKEHLYK 571 (578)
Q Consensus 534 -~eDi~~l~~~~G~~gv~vgsa~--------~~~~~~~~~~~~~l~~ 571 (578)
+.....+. ..|++|+++=+=+ |...++++++++.+++
T Consensus 213 v~~~~~aAv-a~Ga~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~ 258 (266)
T PRK13398 213 VIPMAKAAI-AAGADGLMIEVHPEPEKALSDARQTLNFEEMKELVDE 258 (266)
T ss_pred HHHHHHHHH-HcCCCEEEEeccCCccccCCchhhcCCHHHHHHHHHH
Confidence 44445554 3799988876522 1233667777776653
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.031 Score=56.65 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..|.+.++...+..-..||++-..+..+.... ...-.+.++++++.+++||.+|=||++.++ ++++.
T Consensus 150 ~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~-----------~~~~~- 217 (259)
T PF00290_consen 150 TTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQ-----------AKKLA- 217 (259)
T ss_dssp TS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHH-----------HHHHH-
T ss_pred CCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHH-----------HHHHH-
Confidence 35667777777777778999988876543221 123467788888888999999999999976 99988
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
.|||.||+||+.++.
T Consensus 218 ~~aDGvIVGSa~v~~ 232 (259)
T PF00290_consen 218 AGADGVIVGSAFVKI 232 (259)
T ss_dssp TTSSEEEESHHHHHH
T ss_pred ccCCEEEECHHHHHH
Confidence 899999999998863
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.06 Score=53.49 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh---h--ccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE---N--VFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~---~--~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
..|++..+.|... +|.|.+.-.+--.+|..-....++-|+++++ + ....|+++|||+. +.++
T Consensus 128 ~Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~------------~ti~ 194 (228)
T PRK08091 128 ETPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTL------------ELAS 194 (228)
T ss_pred CCCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH------------HHHH
Confidence 4678888877765 8989887776322222112233444454443 2 2466999999997 4699
Q ss_pred HHHHcCcceeecchhhhcc
Q 045794 382 EYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~ 400 (578)
++.++|||.+|+||+.+.+
T Consensus 195 ~l~~aGaD~~V~GSalF~~ 213 (228)
T PRK08091 195 YLKQHQIDWVVSGSALFSQ 213 (228)
T ss_pred HHHHCCCCEEEEChhhhCC
Confidence 9999999999999998863
|
|
| >KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.092 Score=60.06 Aligned_cols=92 Identities=24% Similarity=0.311 Sum_probs=61.5
Q ss_pred CCCcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCc------cCCCCCCEEEECCCCCchHHHH----HHH----hhcH
Q 045794 45 SSDSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTP------EDILNANRLIFPGVGAFAAAMD----VLN----KTGM 109 (578)
Q Consensus 45 ~~~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~------~dl~~~DGlILpGGg~~~~~~~----~l~----~~~l 109 (578)
+.+|+|+|+--. ..--..+..++.++|++..-|.-. ..|++|-||+.+||-++.+-+. |.. .++.
T Consensus 1056 s~~PkVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v 1135 (1320)
T KOG1907|consen 1056 STAPKVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESV 1135 (1320)
T ss_pred cCCCceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhH
Confidence 457899999643 445567788999999876554332 2378899999999977665432 211 1123
Q ss_pred HHHHHHHH-hCCCCEEEEechHHHHhhh
Q 045794 110 AEALCAYI-EKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 110 ~~~i~~~~-~~g~PIlGIClG~QlLa~a 136 (578)
.....++. ..+.=-||||.|+|+|++.
T Consensus 1136 ~~QF~~F~~R~DtFslGiCNGCQlms~L 1163 (1320)
T KOG1907|consen 1136 RSQFEAFFNRQDTFSLGICNGCQLMSRL 1163 (1320)
T ss_pred HHHHHHHhcCCCceeeecccHhHHHHHh
Confidence 33333333 3456689999999999984
|
|
| >cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.013 Score=55.69 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=38.4
Q ss_pred CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 83 ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 83 l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
...+|+||+|||..... . .....+.++|+++.+.+++|.++|-|..+|+.
T Consensus 60 ~~~~D~lvipgg~~~~~-~--~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~ 109 (183)
T cd03139 60 PPDLDVLLVPGGGGTRA-L--VNDPALLDFIRRQAARAKYVTSVCTGALLLAA 109 (183)
T ss_pred CCCCCEEEECCCcchhh-h--ccCHHHHHHHHHhcccCCEEEEEchHHHHHHh
Confidence 45799999999853211 1 11224678899998999999999999999998
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.026 Score=58.60 Aligned_cols=77 Identities=30% Similarity=0.313 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
.+.|+...+.|++.|.+..-.+.. .....+++..+.++++.+ .+||...|||++.+| +.+++.+|
T Consensus 183 ~~~a~~a~~~G~d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d-----------~~kal~lG 249 (299)
T cd02809 183 PEDALRAVDAGADGIVVSNHGGRQ--LDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTD-----------VLKALALG 249 (299)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCCC--CCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHH-----------HHHHHHcC
Confidence 367899999999988765432211 012246788999998877 499999999999977 88888999
Q ss_pred cceeecchhhhc
Q 045794 388 ADKISIGSDAVY 399 (578)
Q Consensus 388 a~~vv~gt~~~~ 399 (578)
|+-|.+|+..+.
T Consensus 250 Ad~V~ig~~~l~ 261 (299)
T cd02809 250 ADAVLIGRPFLY 261 (299)
T ss_pred CCEEEEcHHHHH
Confidence 999999997665
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.73 Score=45.24 Aligned_cols=185 Identities=12% Similarity=0.112 Sum_probs=109.8
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH-cCcc
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR-SGAD 389 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~-~Ga~ 389 (578)
+-|+...++|+|.+=++ ... .+ .|-...+..++|.+.+.- .++. |-+|.-++.+.+.++.+ .|.|
T Consensus 12 eda~~~~~~GaD~iGfI-f~~--~S--pR~V~~~~a~~i~~~~~~------~~~~---VgVf~~~~~~~i~~~~~~~~~d 77 (207)
T PRK13958 12 KDVTAASQLPIDAIGFI-HYE--KS--KRHQTITQIKKLASAVPN------HIDK---VCVVVNPDLTTIEHILSNTSIN 77 (207)
T ss_pred HHHHHHHHcCCCEEEEe-cCC--CC--cccCCHHHHHHHHHhCCC------CCCE---EEEEeCCCHHHHHHHHHhCCCC
Confidence 45667778999999887 322 11 234557778888876531 2222 23455566778888875 5667
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTV 469 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (578)
.|=+-. -+ .++.++++.+.++.-+++-++.+
T Consensus 78 ~vQLHG--~e------------~~~~~~~l~~~~~~~~iika~~~----------------------------------- 108 (207)
T PRK13958 78 TIQLHG--TE------------SIDFIQEIKKKYSSIKIIKALPA----------------------------------- 108 (207)
T ss_pred EEEECC--CC------------CHHHHHHHhhcCCCceEEEEecc-----------------------------------
Confidence 665521 11 13566777655543344443321
Q ss_pred cccccCCCCCHHHHHHHHHHcCCcEEEEeccCC---CCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH-hcC
Q 045794 470 NGGREGRPIGAYELAKAVEDLGAGEILLNCIDC---DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFR-KTN 545 (578)
Q Consensus 470 ~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~---dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~-~~G 545 (578)
+....+.++.+.. .++.++ +|-.. -|+..-+||++++.+ ...|++.+||+ +++.+.++.. ..+
T Consensus 109 -------~~~~~~~~~~~~~-~~d~~L-lDs~~~~~GGtG~~~dw~~~~~~---~~~p~iLAGGL-~peNV~~a~~~~~~ 175 (207)
T PRK13958 109 -------DENIIQNINKYKG-FVDLFI-IDTPSVSYGGTGQTYDWTILKHI---KDIPYLIAGGI-NSENIQTVEQLKLS 175 (207)
T ss_pred -------cHHHHHHHHHHHh-hCCEEE-EcCCCCCCCcCCcEeChHHhhhc---cCCCEEEECCC-CHHHHHHHHhcCCC
Confidence 0012333444433 366655 44332 345555799999876 34599999999 7888888764 346
Q ss_pred chHHhhhhhhc-cCCCCHHHHHHHHHh
Q 045794 546 ASAALAAGIFH-RKEVPIQSVKEHLYK 571 (578)
Q Consensus 546 ~~gv~vgsa~~-~~~~~~~~~~~~l~~ 571 (578)
.+||=+.|.+- .|.-++..++++++.
T Consensus 176 p~gVDvsSGVE~~G~KD~~ki~~f~~~ 202 (207)
T PRK13958 176 HQGYDIASGIETNGRKDINKMTAIVNI 202 (207)
T ss_pred CCEEEcccccCCCCCCCHHHHHHHHHH
Confidence 77777777774 355567777777654
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.037 Score=54.96 Aligned_cols=79 Identities=19% Similarity=0.100 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCCeEEEEec--ccCCCCCC-C-CchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 311 ELARQYYKEGADEISFLNI--TGFRDFPL-G-DLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl--~~~~~~~~-~-~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
+.++...+.+.+.|.+.-. -+...+.. . .....++++.+.+.. ++||.+||||++.++ ++++++
T Consensus 125 ~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~-----------~~~~~~ 193 (223)
T PRK04302 125 ETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGED-----------VKAALE 193 (223)
T ss_pred HHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHH-----------HHHHHc
Confidence 3444566678887776532 22210100 0 011223344444423 689999999999876 999999
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
.|+|.|++||+.++.
T Consensus 194 ~gadGvlVGsa~l~~ 208 (223)
T PRK04302 194 LGADGVLLASGVVKA 208 (223)
T ss_pred CCCCEEEEehHHhCC
Confidence 999999999999974
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.026 Score=53.47 Aligned_cols=69 Identities=32% Similarity=0.310 Sum_probs=49.8
Q ss_pred HHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecch
Q 045794 316 YYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGS 395 (578)
Q Consensus 316 ~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt 395 (578)
+.+.|++.+.+-..................++.+.+...+||.++|||++.++ +.++++.|||.|++|+
T Consensus 132 ~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~-----------~~~~~~~Gad~v~vgs 200 (200)
T cd04722 132 AEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPED-----------AAEALALGADGVIVGS 200 (200)
T ss_pred HHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHH-----------HHHHHHhCCCEEEecC
Confidence 66789998887666543222111111235566666677899999999999765 8999999999999986
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.051 Score=53.71 Aligned_cols=90 Identities=13% Similarity=0.192 Sum_probs=67.4
Q ss_pred CCcEEEEEECCC----CCHHHHHHHHHHCCCe-EEEeCCc-----------cCCCCCCEEEECCCCCchHHHHHHHhhcH
Q 045794 46 SDSVVTLLDYGA----GNVRSVRNAIRHLGFG-IKDVQTP-----------EDILNANRLIFPGVGAFAAAMDVLNKTGM 109 (578)
Q Consensus 46 ~~~~I~vld~~~----g~~~~i~~~L~~~Gv~-v~~v~~~-----------~dl~~~DGlILpGGg~~~~~~~~l~~~~l 109 (578)
..++|+++...+ .....+.+++++.|+. +.++... +.+.++|+|+++||.. ...+..++..++
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~-~~~~~~l~~t~l 106 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQ-LRITSALGGTPL 106 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcH-HHHHHHHcCChH
Confidence 456788887643 3466688889999984 5544322 1267899999999653 445566666678
Q ss_pred HHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 110 AEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 110 ~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.+.|+++++++.|+.|+-.|..+++..
T Consensus 107 ~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 107 LDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 889999999999999999999998874
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. |
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.054 Score=55.28 Aligned_cols=90 Identities=17% Similarity=0.246 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHcCCcEEEEec--cCC------------CCCCCCC-----CHHHHHHHHhhC--CCcEEEecCCCCHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNC--IDC------------DGQGKGF-----DMDLIKLISDAV--SIPVIASSGAGAVEHF 537 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~td--i~~------------dG~~~G~-----d~~li~~l~~~~--~ipVIasGGi~s~eDi 537 (578)
.+.|++.-+.+...+.+|+.+ +++ .|-++|+ .++.++++...+ .||||..|||.|=+|.
T Consensus 267 el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA 346 (398)
T KOG1436|consen 267 ELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDA 346 (398)
T ss_pred HHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhH
Confidence 467888888899999999765 333 3445665 346777776655 7999999999999999
Q ss_pred HHHHHhcCchHHhhhhhh-ccCCCCHHHHHHHH
Q 045794 538 SDVFRKTNASAALAAGIF-HRKEVPIQSVKEHL 569 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~-~~~~~~~~~~~~~l 569 (578)
.+-++ +||+-|-+.+++ +.|+-.+..+|+.|
T Consensus 347 ~Ekir-aGASlvQlyTal~yeGp~i~~kIk~El 378 (398)
T KOG1436|consen 347 YEKIR-AGASLVQLYTALVYEGPAIIEKIKREL 378 (398)
T ss_pred HHHHh-cCchHHHHHHHHhhcCchhHHHHHHHH
Confidence 98886 999999999988 56776676666544
|
|
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.1 Score=54.89 Aligned_cols=208 Identities=13% Similarity=0.142 Sum_probs=117.1
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
.+.+..++.++. .|+.+....-...+...-..+++.+++.. .+||.+ .++ |..+++.+++.+++|.+
T Consensus 33 avi~AAEe~~sP--vIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaL-----HLD-----Hg~~~e~i~~Ai~~GFt 100 (347)
T PRK13399 33 AIMEAAEATDSP--VILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICL-----HQD-----HGNSPATCQSAIRSGFT 100 (347)
T ss_pred HHHHHHHHhCCC--EEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEE-----ECC-----CCCCHHHHHHHHhcCCC
Confidence 445555555665 44455421111122233445667777777 488864 332 56778889999999999
Q ss_pred eeecchhhhccc---hhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 390 KISIGSDAVYAA---EDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 390 ~vv~gt~~~~~~---~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
-|.+.-+.+.+. ..|- .|.+..+++. ..+| +++-.--|.+-. . ..+..|++-
T Consensus 101 SVMiDgS~l~~~~~~~~~e-----eNI~~Trevve~Ah~~G-----vsVEaELG~igg----------~-e~~~~g~ed- 158 (347)
T PRK13399 101 SVMMDGSLLADGKTPASYD-----YNVDVTRRVTEMAHAVG-----VSVEGELGCLGS----------L-ETGEAGEED- 158 (347)
T ss_pred EEEEeCCCCCCCCCccCHH-----HHHHHHHHHHHHHHHcC-----CeEEEEeeeccC----------c-ccccccccC-
Confidence 999954433200 0010 1234444444 4465 334332221100 0 000000000
Q ss_pred eEEEEEcc--cccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC--------CCHHHHHHHHhhC-CCcEEEecCCC
Q 045794 464 WYQCTVNG--GREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG--------FDMDLIKLISDAV-SIPVIASSGAG 532 (578)
Q Consensus 464 ~~~~~~~g--~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G--------~d~~li~~l~~~~-~ipVIasGGi~ 532 (578)
.+...+ -.+..-.++.+..+-+++-|++.+-+--=+.-|.+.+ .|+++++++.+.+ ++|++.-||=+
T Consensus 159 --~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSG 236 (347)
T PRK13399 159 --GVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSS 236 (347)
T ss_pred --CccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCC
Confidence 000000 0011133678888888889999777444455566654 6899999999999 79999999987
Q ss_pred CH----------------------HHHHHHHHhcCchHHhhhhhh
Q 045794 533 AV----------------------EHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 533 s~----------------------eDi~~l~~~~G~~gv~vgsa~ 555 (578)
.+ |+++++.+ .|+..|=+++-+
T Consensus 237 vp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~-~GI~KINi~Tdl 280 (347)
T PRK13399 237 VPQELQEIINAYGGKMKETYGVPVEEIQRGIK-HGVRKVNIDTDI 280 (347)
T ss_pred CCHHHHHHHHHhcCCccccCCCCHHHHHHHHH-CCCeEEEeChHH
Confidence 65 77888885 888887666654
|
|
| >cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.0094 Score=59.11 Aligned_cols=52 Identities=13% Similarity=0.288 Sum_probs=39.5
Q ss_pred CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 83 ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 83 l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
+.+||+|+||||......+ .....+.++++++.+++++|.+||-|-++|+.+
T Consensus 88 ~~~~dal~ipGG~~~~~~l--~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDL--PDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred HhHceEEEECCCccccccc--ccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 4579999999985321111 122357789999999999999999999999984
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.038 Score=58.37 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCC-----------CCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccC
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFP-----------LGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYS 375 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~-----------~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~ 375 (578)
.+-+++++.+.+.|++.|++-.= ..... .....+.+..++|++.+++||.++|+|++.++
T Consensus 236 eea~~ia~~Le~~Gvd~iev~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~------- 306 (338)
T cd04733 236 EDALEVVEALEEAGVDLVELSGG--TYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAA------- 306 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEecCC--CCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHH-------
Confidence 35678899999999998885321 10000 00122467788899889999999999999866
Q ss_pred hHHHHHHHHHcC-cceeecchhhhcc
Q 045794 376 SLEVASEYFRSG-ADKISIGSDAVYA 400 (578)
Q Consensus 376 ~~~~~~~~l~~G-a~~vv~gt~~~~~ 400 (578)
++++++.| +|-|.+|..++.|
T Consensus 307 ----a~~~l~~g~aD~V~lgR~~iad 328 (338)
T cd04733 307 ----MEQALASGAVDGIGLARPLALE 328 (338)
T ss_pred ----HHHHHHcCCCCeeeeChHhhhC
Confidence 99999987 8999999999985
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.057 Score=51.62 Aligned_cols=80 Identities=30% Similarity=0.270 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCC-CCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPL-GDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~-~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
++.+ ++.+.+.|+|.+.+--+.....+.. .....++.++++++...+||.+.|||.. + ++++++++
T Consensus 104 t~~~-~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~~-~-----------~i~~~~~~ 170 (196)
T cd00564 104 SLEE-ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGITP-E-----------NAAEVLAA 170 (196)
T ss_pred CHHH-HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCH-H-----------HHHHHHHc
Confidence 4544 5566778999887532211111110 0234578888888778899999999974 3 49999999
Q ss_pred Ccceeecchhhhcc
Q 045794 387 GADKISIGSDAVYA 400 (578)
Q Consensus 387 Ga~~vv~gt~~~~~ 400 (578)
|++.+++|+..+.+
T Consensus 171 Ga~~i~~g~~i~~~ 184 (196)
T cd00564 171 GADGVAVISAITGA 184 (196)
T ss_pred CCCEEEEehHhhcC
Confidence 99999999998864
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.031 Score=57.98 Aligned_cols=90 Identities=24% Similarity=0.345 Sum_probs=69.9
Q ss_pred ecCCHHHHHHHHHHcCCCeEEEEe-cc-cC--------------CC---CCCCCchhHHHHHHHhhhcc--ccEEEeCCc
Q 045794 305 NLGKPVELARQYYKEGADEISFLN-IT-GF--------------RD---FPLGDLPMLQVLRLTSENVF--VPLTVGGGI 363 (578)
Q Consensus 305 ~~~~p~~~a~~~~~~g~~~i~~~D-l~-~~--------------~~---~~~~~~~~~~~i~~i~~~~~--~pi~~gGGi 363 (578)
+..|-.++|+.+.+.|+|.|.+++ +- +. .+ +..-+...+++|+++.++++ +||.-=|||
T Consensus 171 ~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI 250 (310)
T COG0167 171 NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGI 250 (310)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCc
Confidence 346888999999999999999986 11 11 01 11123567889999999977 999777999
Q ss_pred cccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 364 RDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 364 r~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
.|.+| +.+.+.+||+-|=|+|+.+++-|..+
T Consensus 251 ~s~~D-----------A~E~i~aGA~~vQv~Tal~~~Gp~i~ 281 (310)
T COG0167 251 ETGED-----------ALEFILAGASAVQVGTALIYKGPGIV 281 (310)
T ss_pred CcHHH-----------HHHHHHcCCchheeeeeeeeeCchHH
Confidence 99977 88888999999999999999644443
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.032 Score=59.14 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcce
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~ 390 (578)
+-|+...+.|++.|.+-+-.+.. .......++.+.++++.+++||.+.||||+-.| +-+.+.+||+-
T Consensus 248 eda~~a~~~G~d~I~VSnhGGrq--ld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~D-----------v~KALaLGA~a 314 (361)
T cd04736 248 EDAKRCIELGADGVILSNHGGRQ--LDDAIAPIEALAEIVAATYKPVLIDSGIRRGSD-----------IVKALALGANA 314 (361)
T ss_pred HHHHHHHHCCcCEEEECCCCcCC--CcCCccHHHHHHHHHHHhCCeEEEeCCCCCHHH-----------HHHHHHcCCCE
Confidence 56788888999988876655432 112234688999999888999999999999977 88999999999
Q ss_pred eecchhhhc
Q 045794 391 ISIGSDAVY 399 (578)
Q Consensus 391 vv~gt~~~~ 399 (578)
|.+|+..+.
T Consensus 315 V~iGr~~l~ 323 (361)
T cd04736 315 VLLGRATLY 323 (361)
T ss_pred EEECHHHHH
Confidence 999987774
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >COG3340 PepE Peptidase E [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.041 Score=53.50 Aligned_cols=78 Identities=19% Similarity=0.391 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHCCCeEEEeCCc----cC----CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechH
Q 045794 59 NVRSVRNAIRHLGFGIKDVQTP----ED----ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGL 130 (578)
Q Consensus 59 ~~~~i~~~L~~~Gv~v~~v~~~----~d----l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~ 130 (578)
+.....++|+..|+++.-++.. ++ +.+.|+|+++||. +..-+..+++.++.+.|++.+.+|+|.+|+-.|.
T Consensus 50 Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGN-TF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA 128 (224)
T COG3340 50 YVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGN-TFNLLQELKETGLDDIIRERVKAGTPYIGWSAGA 128 (224)
T ss_pred HHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCch-HHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCc
Confidence 4445677899999988765432 23 4569999998865 4556677788899999999999999999999999
Q ss_pred HHHhhhc
Q 045794 131 QLLFQSS 137 (578)
Q Consensus 131 QlLa~a~ 137 (578)
-+-+..+
T Consensus 129 ~ia~p~I 135 (224)
T COG3340 129 NIAGPTI 135 (224)
T ss_pred eeecCce
Confidence 8777654
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.055 Score=55.71 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHh-----hCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISD-----AVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~-----~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
.+-+.++.+.|++.|.+= ..+.+.++++.+ ..++|+.++||| +.+.+.++.+ +|+|++++|+++
T Consensus 206 leea~eA~~~GaD~I~LD---------n~~~e~l~~av~~~~~~~~~i~leAsGGI-t~~ni~~ya~-tGvD~Isvgsl~ 274 (288)
T PRK07428 206 LEQVQEALEYGADIIMLD---------NMPVDLMQQAVQLIRQQNPRVKIEASGNI-TLETIRAVAE-TGVDYISSSAPI 274 (288)
T ss_pred HHHHHHHHHcCCCEEEEC---------CCCHHHHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHH-cCCCEEEEchhh
Confidence 456667779999977754 233455555543 246899999999 7999999985 999999999999
Q ss_pred ccCC
Q 045794 556 HRKE 559 (578)
Q Consensus 556 ~~~~ 559 (578)
|+.+
T Consensus 275 ~sa~ 278 (288)
T PRK07428 275 TRSP 278 (288)
T ss_pred hCCC
Confidence 9543
|
|
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.024 Score=59.76 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCC----CchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLG----DLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~----~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..|+...+.|+|-++..=-++ +||.+ ....+.++.++.+.+. +||.+.|||-+-++ +..+|.
T Consensus 138 ~~A~~~~~~G~d~vI~~g~eA--GGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~-----------i~AAla 204 (336)
T COG2070 138 REALKAERAGADAVIAQGAEA--GGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRG-----------IAAALA 204 (336)
T ss_pred HHHHHHHhCCCCEEEecCCcC--CCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHH-----------HHHHHH
Confidence 788899999999777655544 46655 4456889999999999 99999999999876 999999
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
+||+-|-+||..+--
T Consensus 205 lGA~gVq~GT~Fl~t 219 (336)
T COG2070 205 LGADGVQMGTRFLAT 219 (336)
T ss_pred hccHHHHhhhhhhcc
Confidence 999999999988753
|
|
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.047 Score=58.71 Aligned_cols=92 Identities=23% Similarity=0.242 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecc--c-C---CCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNIT--G-F---RDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~--~-~---~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
.+-+++++.+.+.|+|.|++--=. . . .......+.+...++++.+.+++||.+-|||++.++ +
T Consensus 252 e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~-----------~ 320 (382)
T cd02931 252 EEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPEL-----------A 320 (382)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHH-----------H
Confidence 356789999999999988863100 0 0 000011233467788888888999999999999866 9
Q ss_pred HHHHHcC-cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 381 SEYFRSG-ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 381 ~~~l~~G-a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
+++++.| +|-|.+|..++.+ |++++++.+
T Consensus 321 ~~~l~~g~~D~V~~gR~~lad------------P~l~~k~~~ 350 (382)
T cd02931 321 SEAINEGIADMISLGRPLLAD------------PDVVNKIRR 350 (382)
T ss_pred HHHHHcCCCCeeeechHhHhC------------ccHHHHHHc
Confidence 9999876 9999999999985 466777764
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.096 Score=52.00 Aligned_cols=80 Identities=23% Similarity=0.335 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecc-cCCCCCCCCchhHHHHHHHhhh---c--cccEEEeCCccccccCCCCccChHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNIT-GFRDFPLGDLPMLQVLRLTSEN---V--FVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~-~~~~~~~~~~~~~~~i~~i~~~---~--~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
..|++..+.|.+. +|.|.+.-.+ |..+.. -....++-|+++++. - ...|+|+|||+. +++
T Consensus 120 ~T~~~~i~~~l~~-vD~VlvMtV~PGf~GQ~-fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~------------eti 185 (223)
T PRK08745 120 ATPVDILDWVLPE-LDLVLVMSVNPGFGGQA-FIPSALDKLRAIRKKIDALGKPIRLEIDGGVKA------------DNI 185 (223)
T ss_pred CCCHHHHHHHHhh-cCEEEEEEECCCCCCcc-ccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCH------------HHH
Confidence 5788888877664 8888887666 332222 123334445544432 2 366999999997 569
Q ss_pred HHHHHcCcceeecchhhhcc
Q 045794 381 SEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+.+.++|||.+|+||+.+..
T Consensus 186 ~~l~~aGaDi~V~GSaiF~~ 205 (223)
T PRK08745 186 GAIAAAGADTFVAGSAIFNA 205 (223)
T ss_pred HHHHHcCCCEEEEChhhhCC
Confidence 99999999999999998863
|
|
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.023 Score=60.45 Aligned_cols=77 Identities=25% Similarity=0.177 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+-++.+.+.|++.|++-+----..-.|+ -.+.+.++++.+ ++|||++|||++-.|+.+++. +||++|.+|+.+..
T Consensus 236 ~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kala-LGA~~v~igr~~l~ 314 (356)
T PF01070_consen 236 PEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALA-LGADAVGIGRPFLY 314 (356)
T ss_dssp HHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHH-TT-SEEEESHHHHH
T ss_pred HHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHH-cCCCeEEEccHHHH
Confidence 46778899999999998764322233344 457788887755 599999999999999999995 99999999998765
Q ss_pred C
Q 045794 558 K 558 (578)
Q Consensus 558 ~ 558 (578)
+
T Consensus 315 ~ 315 (356)
T PF01070_consen 315 A 315 (356)
T ss_dssp H
T ss_pred H
Confidence 3
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.041 Score=59.37 Aligned_cols=78 Identities=19% Similarity=0.180 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC-CCCC-------CCC-CHHHHHHHHhhC-------CCcEEEecCCCCHHHHHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC-DGQG-------KGF-DMDLIKLISDAV-------SIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~-dG~~-------~G~-d~~li~~l~~~~-------~ipVIasGGi~s~eDi~~l~~ 542 (578)
+..++++.++..|++.|.+-...- .|.. .|. -...+.++.+.+ ++|||++|||++..|+.+++.
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kala 305 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALA 305 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHH
Confidence 567888888888899998766532 1111 133 234445554432 699999999999999999995
Q ss_pred hcCchHHhhhhhhcc
Q 045794 543 KTNASAALAAGIFHR 557 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~ 557 (578)
+||++|.+|+++..
T Consensus 306 -LGAd~V~ig~~~l~ 319 (392)
T cd02808 306 -LGADAVGIGTAALI 319 (392)
T ss_pred -cCCCeeeechHHHH
Confidence 99999999998864
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.084 Score=53.19 Aligned_cols=81 Identities=10% Similarity=0.152 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh---hc--cccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE---NV--FVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~---~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
+.|++..+.|... +|.|.+.-.+-=.+|..-....++-|+++++ +- ...|+++|||+. +.++
T Consensus 142 ~Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~------------~ti~ 208 (254)
T PRK14057 142 ATPLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ------------DQLP 208 (254)
T ss_pred CCCHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH------------HHHH
Confidence 5788888888775 8989888777321222222333344444433 22 366999999998 4699
Q ss_pred HHHHcCcceeecchhhhcc
Q 045794 382 EYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~ 400 (578)
++.++|||.+|.||+.+.+
T Consensus 209 ~l~~aGad~~V~GSalF~~ 227 (254)
T PRK14057 209 SLIAQGIDRVVSGSALFRD 227 (254)
T ss_pred HHHHCCCCEEEEChHhhCC
Confidence 9999999999999999863
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.47 Score=48.89 Aligned_cols=185 Identities=16% Similarity=0.150 Sum_probs=105.8
Q ss_pred HHHHHHc---------CCCeEEEEecc-----cCCC-CCCCCchhHHHHHHHhhhccccEEEe--CCccccccCCCCccC
Q 045794 313 ARQYYKE---------GADEISFLNIT-----GFRD-FPLGDLPMLQVLRLTSENVFVPLTVG--GGIRDFTDANGRHYS 375 (578)
Q Consensus 313 a~~~~~~---------g~~~i~~~Dl~-----~~~~-~~~~~~~~~~~i~~i~~~~~~pi~~g--GGir~~~d~~~~~~~ 375 (578)
|+...+. |++-++.--.. |..| +.......+..++.|...+.+||.++ +| .+...
T Consensus 22 A~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~~------- 93 (285)
T TIGR02320 22 ALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTG-GNFEH------- 93 (285)
T ss_pred HHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCC-CCHHH-------
Confidence 5556666 88887764221 1112 12234566788999999999997665 56 45443
Q ss_pred hHHHHHHHHHcCcceeec-chh--------------hhccchhhhhccccCCchHHHHHHHh-CCCCeEE-EEEeccccc
Q 045794 376 SLEVASEYFRSGADKISI-GSD--------------AVYAAEDYLKTGVKTGKSSLEQISRV-YGNQAVV-VSIDPRRVY 438 (578)
Q Consensus 376 ~~~~~~~~l~~Ga~~vv~-gt~--------------~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~iv-~slD~~~~~ 438 (578)
-.+.++++.++|+.-+.| ... .+....+++ +.|+.+.+. -+.+.++ +-.|.+-
T Consensus 94 v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~--------~kI~Aa~~a~~~~~~~IiARTDa~~-- 163 (285)
T TIGR02320 94 FRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFC--------GKIRAGKDAQTTEDFMIIARVESLI-- 163 (285)
T ss_pred HHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHH--------HHHHHHHHhccCCCeEEEEeccccc--
Confidence 235688999999998888 111 111122222 334443322 2322222 2222211
Q ss_pred cCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 045794 439 ITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLIS 518 (578)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~ 518 (578)
...|. -..++-++.+.+.|++.+.+... -.+.+.++++.
T Consensus 164 -----------------------------~~~~~-----~eAi~Ra~ay~eAGAD~ifv~~~-------~~~~~ei~~~~ 202 (285)
T TIGR02320 164 -----------------------------LGKGM-----EDALKRAEAYAEAGADGIMIHSR-------KKDPDEILEFA 202 (285)
T ss_pred -----------------------------ccCCH-----HHHHHHHHHHHHcCCCEEEecCC-------CCCHHHHHHHH
Confidence 00111 14678899999999999998721 13567777776
Q ss_pred hhC-----CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 519 DAV-----SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 519 ~~~-----~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+.+ ++|+++..+-...-.+.+|.+ .|+.-|+.+..++.
T Consensus 203 ~~~~~~~p~~pl~~~~~~~~~~~~~eL~~-lG~~~v~~~~~~~~ 245 (285)
T TIGR02320 203 RRFRNHYPRTPLVIVPTSYYTTPTDEFRD-AGISVVIYANHLLR 245 (285)
T ss_pred HHhhhhCCCCCEEEecCCCCCCCHHHHHH-cCCCEEEEhHHHHH
Confidence 666 458877543222224666664 89988887765543
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.2 Score=50.07 Aligned_cols=198 Identities=9% Similarity=0.073 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEeccc-CCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITG-FRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~-~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+..+..+...+.|...+| +|+-- ..- ..+ .+.|+++.+. +.++.++--+.++-. || ...++.+.++
T Consensus 13 ~~~~~l~~~~~~~~~~~~-ikvg~~~f~-~~G----~~~i~~l~~~-~~~i~~D~Kl~Di~~-----t~-~~~i~~~~~~ 79 (230)
T PRK00230 13 SKEEALAFLDQLDPAVLF-VKVGMELFT-AGG----PQFVRELKQR-GFKVFLDLKLHDIPN-----TV-AKAVRALAKL 79 (230)
T ss_pred CHHHHHHHHHhcCCcccE-EEEcHHHHH-hcC----HHHHHHHHhc-CCCEEEEeehhhccc-----cH-HHHHHHHHHc
Confidence 333555555566766555 77742 110 011 5678888775 334544444433311 11 1346778899
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHH---hCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR---VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
|++.+.+-..+-. +.++++.+ .|. ...++.+++-.- +.. .|
T Consensus 80 gad~itvH~~ag~--------------~~i~~~~~~~~~~~-~~~~~~V~~lts----~~~--------~~--------- 123 (230)
T PRK00230 80 GVDMVNVHASGGP--------------RMMKAAREALEPKS-RPLLIAVTVLTS----MDE--------ED--------- 123 (230)
T ss_pred CCCEEEEcccCCH--------------HHHHHHHHHhhccC-CCeEEEEEECCC----CCH--------HH---------
Confidence 9999988542221 33444433 342 223555654321 000 00
Q ss_pred eEEEEEcccccCC-CCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHH-------
Q 045794 464 WYQCTVNGGREGR-PIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVE------- 535 (578)
Q Consensus 464 ~~~~~~~g~~~~~-~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~e------- 535 (578)
+. ..|.... ..-....++...+.|++.+++... ....++++.. .-.+++.+||+ ++
T Consensus 124 ---l~-~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~---------~~~~ir~~~~--~~~~~v~pGI~-~~g~~~~dq 187 (230)
T PRK00230 124 ---LA-ELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQ---------EAAAIREATG--PDFLLVTPGIR-PAGSDAGDQ 187 (230)
T ss_pred ---HH-hCcCCCCHHHHHHHHHHHHHHcCCeEEEeChH---------HHHHHHhhcC--CceEEEcCCcC-CCCCCcchH
Confidence 00 0011000 112234556677888887765421 1233344321 34567888996 34
Q ss_pred ----HHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 536 ----HFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 536 ----Di~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
...++.+ .|+++++||+++++.+.+...+++..+.
T Consensus 188 ~~~~~~~~ai~-~Gad~iVvGR~I~~a~dP~~~a~~i~~~ 226 (230)
T PRK00230 188 KRVMTPAQAIA-AGSDYIVVGRPITQAADPAAAYEAILAE 226 (230)
T ss_pred HHHhCHHHHHH-cCCCEEEECCcccCCCCHHHHHHHHHHH
Confidence 5777774 8999999999999988877777766543
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.046 Score=55.21 Aligned_cols=82 Identities=20% Similarity=0.225 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..|.+..+...+..-..+|++-..+..+-... ...-.+.++++++.+++|+.+|=||++.++ ++++.+
T Consensus 157 tt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~-----------~~~v~~ 225 (265)
T COG0159 157 TTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQ-----------AAQVAE 225 (265)
T ss_pred CCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHH-----------HHHHHH
Confidence 35557777777766667999999876543322 112467788888888999999999999976 999999
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
. ||.||+||+.++.
T Consensus 226 ~-ADGVIVGSAiV~~ 239 (265)
T COG0159 226 A-ADGVIVGSAIVKI 239 (265)
T ss_pred h-CCeEEEcHHHHHH
Confidence 9 9999999998863
|
|
| >cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31) | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.019 Score=57.47 Aligned_cols=52 Identities=19% Similarity=0.262 Sum_probs=38.8
Q ss_pred CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 83 ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 83 l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
..+||+||+|||.....++. ....+.+.++++.++++||-+||-|-+.|..+
T Consensus 94 ~~dYDav~iPGG~g~~~dl~--~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 94 DSEYAAVFIPGGHGALIGIP--ESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhhceEEEECCCCCChhhcc--cCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 35899999999843222222 22256788999999999999999999877763
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.048 Score=57.78 Aligned_cols=76 Identities=29% Similarity=0.340 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
+-|+...+.|++.|.+-+--+-. .......++.+.++.+.+ .+||.+.||||+-.| +-+++.+||
T Consensus 233 ~dA~~a~~~G~d~I~vsnhGGr~--ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~D-----------i~kaLalGA 299 (351)
T cd04737 233 EDADVAINAGADGIWVSNHGGRQ--LDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEH-----------VFKALASGA 299 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcc--CCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHH-----------HHHHHHcCC
Confidence 77888889999999887654321 012234578888998877 599999999999977 888889999
Q ss_pred ceeecchhhhc
Q 045794 389 DKISIGSDAVY 399 (578)
Q Consensus 389 ~~vv~gt~~~~ 399 (578)
+-|.+|+..+.
T Consensus 300 ~~V~iGr~~l~ 310 (351)
T cd04737 300 DAVAVGRPVLY 310 (351)
T ss_pred CEEEECHHHHH
Confidence 99999997775
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.095 Score=51.52 Aligned_cols=81 Identities=16% Similarity=0.079 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..|++..+.|... +|.|.+.-.+-=.+|..-....++-|+++++.. ...|+++|||+. +.+..+.+
T Consensus 116 ~Tp~~~i~~~l~~-vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~------------~~i~~l~~ 182 (210)
T PRK08005 116 ATPLLPYRYLALQ-LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITL------------RAARLLAA 182 (210)
T ss_pred CCCHHHHHHHHHh-cCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCCCH------------HHHHHHHH
Confidence 4677877777653 888888777631122222233344455544432 236999999997 46999999
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
+|||.+|+||+.+.+
T Consensus 183 aGad~~V~GsaiF~~ 197 (210)
T PRK08005 183 AGAQHLVIGRALFTT 197 (210)
T ss_pred CCCCEEEEChHhhCC
Confidence 999999999998863
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.34 Score=48.11 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHH
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAA 549 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv 549 (578)
+...++.+.+.|++ +|-|+.... ..|...+.++.+++.. .++|.++|||++.+|+.++++ .||+-+
T Consensus 138 i~~a~~~~~~agad-fIKTsTG~~--~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~-aGA~ri 205 (221)
T PRK00507 138 KVKACEIAKEAGAD-FVKTSTGFS--TGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIE-AGATRL 205 (221)
T ss_pred HHHHHHHHHHhCCC-EEEcCCCCC--CCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHH-cCcceE
Confidence 56788889999999 666665432 3456788888877766 489999999999999999996 888855
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.02 Score=60.55 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCcEEEEe-----ccC------CCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHH
Q 045794 481 YELAKAVEDLGAGEILLN-----CID------CDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAA 549 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~t-----di~------~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv 549 (578)
.++++.+++.|++.+-++ ... ......+..+++.+.+++.+++|||+.||+.+++...+++++..||.|
T Consensus 239 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV 318 (341)
T PF00724_consen 239 IEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLV 318 (341)
T ss_dssp HHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEE
T ss_pred HHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEe
Confidence 566888888887755322 111 111223345678888999899999999999999989999886779999
Q ss_pred hhhhhhccCCCCHHHHH
Q 045794 550 LAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 550 ~vgsa~~~~~~~~~~~~ 566 (578)
.+|+++...+.-...++
T Consensus 319 ~~gR~~ladPd~~~k~~ 335 (341)
T PF00724_consen 319 AMGRPLLADPDLPNKAR 335 (341)
T ss_dssp EESHHHHH-TTHHHHHH
T ss_pred eccHHHHhCchHHHHHH
Confidence 99999987775454443
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.31 Score=51.66 Aligned_cols=100 Identities=20% Similarity=0.214 Sum_probs=71.3
Q ss_pred CCHHHHHHHHH-HcCCCeEEEEecccCCCCCCCC-chhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYY-KEGADEISFLNITGFRDFPLGD-LPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~-~~g~~~i~~~Dl~~~~~~~~~~-~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.||.++++... .+|+|.|.+-..++-.++.... ..-.++++++.+.+++|+.++|==..-.| .+.+++.+
T Consensus 139 ~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD--------~eVLeaaL 210 (389)
T TIGR00381 139 EDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKD--------PLVLEKAA 210 (389)
T ss_pred cCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCC--------HHHHHHHH
Confidence 69999999996 5899988887776532221111 13567889998889999999865222223 46788888
Q ss_pred HcCcc-eeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 385 RSGAD-KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 385 ~~Ga~-~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
+.-.. |.+|+++..++ |.+-+.+++.+||.
T Consensus 211 e~~~G~kpLL~SAt~e~-----------Ny~~ia~lAk~yg~ 241 (389)
T TIGR00381 211 EVAEGERCLLASANLDL-----------DYEKIANAAKKYGH 241 (389)
T ss_pred HHhCCCCcEEEecCchh-----------hHHHHHHHHHHhCC
Confidence 77555 89999988873 23667888899985
|
This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2. |
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.082 Score=51.57 Aligned_cols=80 Identities=26% Similarity=0.191 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecc--cCCCCCCCCchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNIT--GFRDFPLGDLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~--~~~~~~~~~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
.++.++.+ ..+.|+|.+-+--+. ....+. .....++.++++++... +||.+.|||+ .+ ++.++
T Consensus 112 ~t~~e~~~-a~~~gaD~v~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~v~a~GGI~-~~-----------~i~~~ 177 (212)
T PRK00043 112 HTLEEAAA-ALAAGADYVGVGPIFPTPTKKDA-KAPQGLEGLREIRAAVGDIPIVAIGGIT-PE-----------NAPEV 177 (212)
T ss_pred CCHHHHHH-HhHcCCCEEEECCccCCCCCCCC-CCCCCHHHHHHHHHhcCCCCEEEECCcC-HH-----------HHHHH
Confidence 36666544 446899988652121 111110 00112678888888776 9999999995 43 49999
Q ss_pred HHcCcceeecchhhhcc
Q 045794 384 FRSGADKISIGSDAVYA 400 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~ 400 (578)
+++||+.|++|+..+++
T Consensus 178 ~~~Ga~gv~~gs~i~~~ 194 (212)
T PRK00043 178 LEAGADGVAVVSAITGA 194 (212)
T ss_pred HHcCCCEEEEeHHhhcC
Confidence 99999999999988764
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.11 Score=52.88 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=44.2
Q ss_pred chhHHHHHHHhhhccccEE--EeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhc
Q 045794 340 LPMLQVLRLTSENVFVPLT--VGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 340 ~~~~~~i~~i~~~~~~pi~--~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
.+++++|+++.+.+.+||. .-|||.+.++ +++++++||+.|++||+...
T Consensus 180 ~~d~elLk~l~~~~~iPVV~iAeGGI~Tpen-----------a~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 180 QAPYELVKETAKLGRLPVVNFAAGGVATPAD-----------AALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred CCCHHHHHHHHHhcCCCeEEEEeCCCCCHHH-----------HHHHHHcCCCEEEEcHHhhc
Confidence 4678999999998899997 7899999876 99999999999999999874
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.099 Score=50.90 Aligned_cols=76 Identities=22% Similarity=0.222 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCeEEE--EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 310 VELARQYYKEGADEISF--LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~--~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
.+.++...+.|++.+.+ +--+..+.+ .....++.++++.+.+.+||.+-||| +.++ +.++++.|
T Consensus 105 ~e~a~~a~~~Gadyi~~g~v~~t~~k~~--~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~-----------~~~~~~~G 170 (201)
T PRK07695 105 LEEAIQAEKNGADYVVYGHVFPTDCKKG--VPARGLEELSDIARALSIPVIAIGGI-TPEN-----------TRDVLAAG 170 (201)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCC--CCCCCHHHHHHHHHhCCCCEEEEcCC-CHHH-----------HHHHHHcC
Confidence 34577788899998853 111222111 11335788899988889999999999 6654 99999999
Q ss_pred cceeecchhhhc
Q 045794 388 ADKISIGSDAVY 399 (578)
Q Consensus 388 a~~vv~gt~~~~ 399 (578)
++.|++++....
T Consensus 171 a~gvav~s~i~~ 182 (201)
T PRK07695 171 VSGIAVMSGIFS 182 (201)
T ss_pred CCEEEEEHHHhc
Confidence 999999999886
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.11 Score=50.93 Aligned_cols=82 Identities=20% Similarity=0.164 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc----ccEEEeCCccccccCCCCccChHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF----VPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~----~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
-..|++..+.+.+. +|.+.+.-.+--.+|..-....++-|+++++... .-|+++|||+. ++++
T Consensus 118 P~Tp~~~i~~~l~~-vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~------------~t~~ 184 (220)
T COG0036 118 PATPLEALEPVLDD-VDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINL------------ETIK 184 (220)
T ss_pred CCCCHHHHHHHHhh-CCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCH------------HHHH
Confidence 46889999988775 8888888777322332222345555566555432 45999999998 5699
Q ss_pred HHHHcCcceeecchhhhcc
Q 045794 382 EYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~ 400 (578)
.+.++|||.+|.||+.+..
T Consensus 185 ~~~~AGad~~VaGSalF~~ 203 (220)
T COG0036 185 QLAAAGADVFVAGSALFGA 203 (220)
T ss_pred HHHHcCCCEEEEEEEEeCC
Confidence 9999999999999988875
|
|
| >KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.058 Score=52.85 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=45.7
Q ss_pred HHHHHHCCCeEEEeCCc-------------------cC--CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 64 RNAIRHLGFGIKDVQTP-------------------ED--ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 64 ~~~L~~~Gv~v~~v~~~-------------------~d--l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
.+-|++.|++|.++... .| -.+||.+|||||......+..-. ...+.++++.+.+++
T Consensus 25 ~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~~--~v~~lvK~q~~~gkL 102 (247)
T KOG2764|consen 25 IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSECE--KVVDLVKEQAESGKL 102 (247)
T ss_pred HHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhhcH--HHHHHHHHHHhcCCe
Confidence 46778888888876431 01 16799999999843333333222 356788999999999
Q ss_pred EEEEechH
Q 045794 123 FLGICLGL 130 (578)
Q Consensus 123 IlGIClG~ 130 (578)
|.+||.|-
T Consensus 103 IaaICaap 110 (247)
T KOG2764|consen 103 IAAICAAP 110 (247)
T ss_pred EEEeecch
Confidence 99999886
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.12 Score=51.50 Aligned_cols=80 Identities=18% Similarity=0.175 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh---h--ccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE---N--VFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~---~--~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
..|++..+.|... +|.|.+.-.+-=.+|..-....++-|+++++ + ....|+++|||+. +.+.
T Consensus 118 ~T~~~~l~~~l~~-vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~------------~~i~ 184 (229)
T PRK09722 118 ETPVESIKYYIHL-LDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQ------------KTYE 184 (229)
T ss_pred CCCHHHHHHHHHh-cCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH------------HHHH
Confidence 4677888877664 8888887776311222222333444454443 2 2356999999997 4699
Q ss_pred HHHHcCcceeecchh-hhc
Q 045794 382 EYFRSGADKISIGSD-AVY 399 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~-~~~ 399 (578)
++.++|||.+|+||. .+.
T Consensus 185 ~~~~aGad~~V~Gss~iF~ 203 (229)
T PRK09722 185 KLMEAGADVFIVGTSGLFN 203 (229)
T ss_pred HHHHcCCCEEEEChHHHcC
Confidence 999999999999965 554
|
|
| >PRK11249 katE hydroperoxidase II; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.088 Score=60.69 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=62.5
Q ss_pred CCcEEEEEECC---CCCHHHHHHHHHHCCCeEEEeCCc---------------cCC-----CCCCEEEECCCCCchHHHH
Q 045794 46 SDSVVTLLDYG---AGNVRSVRNAIRHLGFGIKDVQTP---------------EDI-----LNANRLIFPGVGAFAAAMD 102 (578)
Q Consensus 46 ~~~~I~vld~~---~g~~~~i~~~L~~~Gv~v~~v~~~---------------~dl-----~~~DGlILpGGg~~~~~~~ 102 (578)
..++|+||-++ ..-+..+.+.|+..|+.+.++... ..+ ..||+|+||||......+.
T Consensus 596 ~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~ 675 (752)
T PRK11249 596 KGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLA 675 (752)
T ss_pred cccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHh
Confidence 45668887543 224456788999999988877431 011 2599999999853222221
Q ss_pred HHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 103 VLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 103 ~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.......+|+++.+.+++|.+||-|.++|+.+
T Consensus 676 --~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 676 --DNGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred --hCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 12246788999999999999999999999984
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.051 Score=60.46 Aligned_cols=78 Identities=18% Similarity=0.260 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCCeEEEEec-cc----CCC---CCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 310 VELARQYYKEGADEISFLNI-TG----FRD---FPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl-~~----~~~---~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+-|+.+.+.|||.|.+ =+ .+ .+. ....+...+..+.+++++.++||++.|||++..| +.
T Consensus 300 ~e~a~~a~~aGaD~i~v-g~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~d-----------i~ 367 (505)
T PLN02274 300 MYQAQNLIQAGVDGLRV-GMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGH-----------IV 367 (505)
T ss_pred HHHHHHHHHcCcCEEEE-CCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHH-----------HH
Confidence 35688888999997765 11 11 000 0001223566688888888999999999999977 99
Q ss_pred HHHHcCcceeecchhhhc
Q 045794 382 EYFRSGADKISIGSDAVY 399 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~ 399 (578)
+.|.+||+.|.+||....
T Consensus 368 kAla~GA~~V~vGs~~~~ 385 (505)
T PLN02274 368 KALTLGASTVMMGSFLAG 385 (505)
T ss_pred HHHHcCCCEEEEchhhcc
Confidence 999999999999998776
|
|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.081 Score=54.17 Aligned_cols=72 Identities=13% Similarity=0.134 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhh
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDA-----VSIPVIASSGAGAVEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~-----~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa 554 (578)
.++-++++.+.|++.|.+...+ .+.+++..+. .++.+.++||| +++.+.+..+ +|+|.+++|+.
T Consensus 197 tleea~ea~~~GaDiI~lDn~~---------~e~l~~~v~~l~~~~~~~~leasGGI-~~~ni~~ya~-~GvD~is~gal 265 (277)
T TIGR01334 197 TIEQALTVLQASPDILQLDKFT---------PQQLHHLHERLKFFDHIPTLAAAGGI-NPENIADYIE-AGIDLFITSAP 265 (277)
T ss_pred CHHHHHHHHHcCcCEEEECCCC---------HHHHHHHHHHHhccCCCEEEEEECCC-CHHHHHHHHh-cCCCEEEeCcc
Confidence 3677788889999988877433 3333333222 35679999999 8899999985 99999998988
Q ss_pred hccCCCCH
Q 045794 555 FHRKEVPI 562 (578)
Q Consensus 555 ~~~~~~~~ 562 (578)
+|.++.++
T Consensus 266 ~~a~~~Di 273 (277)
T TIGR01334 266 YYAAPCDI 273 (277)
T ss_pred eecCccce
Confidence 77777655
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.058 Score=57.36 Aligned_cols=77 Identities=29% Similarity=0.348 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
.+.|+...+.|++.|.+-.-.+-+- ......++.+.++.+.+ .+||.+.||||+-.| +.+.+.+|
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HGGrq~--~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~D-----------v~KaLalG 305 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHGGRQL--DGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQH-----------VFKALASG 305 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcCccCC--CCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHH-----------HHHHHHcC
Confidence 4788889999999887766554211 12234578889998876 499999999999987 88888999
Q ss_pred cceeecchhhhc
Q 045794 388 ADKISIGSDAVY 399 (578)
Q Consensus 388 a~~vv~gt~~~~ 399 (578)
|+.|.+|-..+.
T Consensus 306 Ad~V~igR~~l~ 317 (367)
T TIGR02708 306 ADLVALGRPVIY 317 (367)
T ss_pred CCEEEEcHHHHH
Confidence 999999976554
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.069 Score=56.47 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+-+++++.+.+.|+|.|++.--. ... .....+.+..+++++.+++||.+-|||+ .++ ++++++.|
T Consensus 242 e~~~~~~~l~~~g~d~i~vs~g~-~~~--~~~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~-----------a~~~l~~g 306 (338)
T cd02933 242 TFSYLAKELNKRGLAYLHLVEPR-VAG--NPEDQPPDFLDFLRKAFKGPLIAAGGYD-AES-----------AEAALADG 306 (338)
T ss_pred HHHHHHHHHHHcCCcEEEEecCC-CCC--cccccchHHHHHHHHHcCCCEEEECCCC-HHH-----------HHHHHHcC
Confidence 45788999999999988873321 111 1135678889999998999999999997 654 99999886
Q ss_pred -cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 388 -ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 388 -a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
+|-|.+|..++.+ |++++++.+
T Consensus 307 ~~D~V~~gR~~lad------------P~~~~k~~~ 329 (338)
T cd02933 307 KADLVAFGRPFIAN------------PDLVERLKN 329 (338)
T ss_pred CCCEEEeCHhhhhC------------cCHHHHHhc
Confidence 9999999999985 366677653
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 578 | ||||
| 1ox4_A | 555 | Towards Understanding The Mechanism Of The Complex | 1e-150 | ||
| 1jvn_A | 555 | Crystal Structure Of Imidazole Glycerol Phosphate S | 1e-149 | ||
| 1h5y_A | 253 | Hisf Protein From Pyrobaculum Aerophilum Length = 2 | 5e-42 | ||
| 1ka9_F | 252 | Imidazole Glycerol Phosphate Synthase Length = 252 | 2e-36 | ||
| 2a0n_A | 265 | Crystal Structure Of Imidazole Glycerol Phosphate S | 5e-36 | ||
| 1thf_D | 253 | Cyclase Subunit Of Imidazoleglycerolphosphate Synth | 5e-36 | ||
| 2wjz_A | 253 | Crystal Structure Of (Hish) K181a Y138a Mutant Of I | 6e-36 | ||
| 1vh7_A | 265 | Crystal Structure Of A Cyclase Subunit Of Imidazolg | 6e-36 | ||
| 1gpw_A | 253 | Structural Evidence For Ammonia Tunneling Across Th | 2e-35 | ||
| 4ewn_D | 253 | Structure Of Hisf-D130v+d176v With Bound Rcdrp Leng | 6e-34 | ||
| 2rkx_A | 255 | The 3d Structure Of Chain D, Cyclase Subunit Of Imi | 9e-33 | ||
| 1ka9_H | 200 | Imidazole Glycerol Phosphate Synthase Length = 200 | 6e-32 | ||
| 3iio_A | 262 | Evolutionary Optimization Of Computationally Design | 1e-31 | ||
| 3iip_A | 256 | Evolutionary Optimization Of Computationally Design | 1e-31 | ||
| 3iiv_A | 263 | Evolutionary Optimization Of Computationally Design | 1e-31 | ||
| 4gud_A | 211 | Crystal Structure Of Amidotransferase Hish From Vib | 2e-29 | ||
| 1gpw_B | 201 | Structural Evidence For Ammonia Tunneling Across Th | 4e-24 | ||
| 1kxj_A | 205 | The Crystal Structure Of Glutamine Amidotransferase | 6e-24 | ||
| 2wjz_B | 201 | Crystal Structure Of (Hish) K181a Y138a Mutant Of I | 3e-22 | ||
| 3cwo_X | 237 | A BetaALPHA-Barrel Built By The Combination Of Frag | 8e-18 | ||
| 2w6r_A | 266 | Crystal Structure Of An Artificial (Ba)8-Barrel Pro | 9e-17 | ||
| 3og3_A | 251 | Crystal Structure Of An Artificial Thermostable (Ba | 3e-16 | ||
| 3tdn_B | 247 | Computationally Designed Two-Fold Symmetric Tim-Bar | 2e-15 | ||
| 2lle_A | 234 | Computational Design Of An Eight-Stranded (BetaALPH | 3e-15 | ||
| 3tdm_A | 126 | Computationally Designed Tim-Barrel Protein, Halffl | 1e-10 | ||
| 4gj1_A | 243 | Crystal Structure Of 1-(5-Phosphoribosyl)-5-[(5-Pho | 2e-05 | ||
| 2iss_D | 208 | Structure Of The Plp Synthase Holoenzyme From Therm | 4e-05 | ||
| 2ywj_A | 186 | Crystal Structure Of Uncharacterized Conserved Prot | 3e-04 |
| >pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex Cyclization Reaction Catalyzed By Imidazole Glycerophosphate Synthase Length = 555 | Back alignment and structure |
|
| >pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS TWO ACTIVE SITES Length = 555 | Back alignment and structure |
|
| >pdb|1H5Y|A Chain A, Hisf Protein From Pyrobaculum Aerophilum Length = 253 | Back alignment and structure |
|
| >pdb|1KA9|F Chain F, Imidazole Glycerol Phosphate Synthase Length = 252 | Back alignment and structure |
|
| >pdb|2A0N|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate Synthase Subunit Hisf (ec 4.1.3.-) (tm1036) From Thermotoga Maritima At 1.64 A Resolution Length = 265 | Back alignment and structure |
|
| >pdb|1THF|D Chain D, Cyclase Subunit Of Imidazoleglycerolphosphate Synthase From Thermotoga Maritima Length = 253 | Back alignment and structure |
|
| >pdb|2WJZ|A Chain A, Crystal Structure Of (Hish) K181a Y138a Mutant Of Imidazoleglycerolphosphate Synthase (Hish Hisf) Which Displays Constitutive Glutaminase Activity Length = 253 | Back alignment and structure |
|
| >pdb|1VH7|A Chain A, Crystal Structure Of A Cyclase Subunit Of Imidazolglycerolphosphate Synthase Length = 265 | Back alignment and structure |
|
| >pdb|1GPW|A Chain A, Structural Evidence For Ammonia Tunneling Across The (BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE Synthase Bienzyme Complex. Length = 253 | Back alignment and structure |
|
| >pdb|4EWN|D Chain D, Structure Of Hisf-D130v+d176v With Bound Rcdrp Length = 253 | Back alignment and structure |
|
| >pdb|2RKX|A Chain A, The 3d Structure Of Chain D, Cyclase Subunit Of Imidazoleglycerol_evolvedcerolphosphate Synthase Length = 255 | Back alignment and structure |
|
| >pdb|1KA9|H Chain H, Imidazole Glycerol Phosphate Synthase Length = 200 | Back alignment and structure |
|
| >pdb|3IIO|A Chain A, Evolutionary Optimization Of Computationally Designed Enzymes: Kemp Eliminases Of The Ke07 Series Length = 262 | Back alignment and structure |
|
| >pdb|3IIP|A Chain A, Evolutionary Optimization Of Computationally Designed Enzymes: Kemp Eliminases Of The Ke07 Series Length = 256 | Back alignment and structure |
|
| >pdb|3IIV|A Chain A, Evolutionary Optimization Of Computationally Designed Enzymes: Kemp Eliminases Of The Ke07 Series Length = 263 | Back alignment and structure |
|
| >pdb|4GUD|A Chain A, Crystal Structure Of Amidotransferase Hish From Vibrio Cholerae Length = 211 | Back alignment and structure |
|
| >pdb|1GPW|B Chain B, Structural Evidence For Ammonia Tunneling Across The (BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE Synthase Bienzyme Complex. Length = 201 | Back alignment and structure |
|
| >pdb|1KXJ|A Chain A, The Crystal Structure Of Glutamine Amidotransferase From Thermotoga Maritima Length = 205 | Back alignment and structure |
|
| >pdb|2WJZ|B Chain B, Crystal Structure Of (Hish) K181a Y138a Mutant Of Imidazoleglycerolphosphate Synthase (Hish Hisf) Which Displays Constitutive Glutaminase Activity Length = 201 | Back alignment and structure |
|
| >pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments From Different Folds Length = 237 | Back alignment and structure |
|
| >pdb|2W6R|A Chain A, Crystal Structure Of An Artificial (Ba)8-Barrel Protein Designed From Identical Half Barrels Length = 266 | Back alignment and structure |
|
| >pdb|3OG3|A Chain A, Crystal Structure Of An Artificial Thermostable (Ba)8-Barrel Protein From Identical Half Barrels Length = 251 | Back alignment and structure |
|
| >pdb|3TDN|B Chain B, Computationally Designed Two-Fold Symmetric Tim-Barrel Protein, Flr Length = 247 | Back alignment and structure |
|
| >pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded (BetaALPHA)-Barrel From Fragments Of Different Folds Length = 234 | Back alignment and structure |
|
| >pdb|3TDM|A Chain A, Computationally Designed Tim-Barrel Protein, Halfflr Length = 126 | Back alignment and structure |
|
| >pdb|4GJ1|A Chain A, Crystal Structure Of 1-(5-Phosphoribosyl)-5-[(5-Phosphoribosylamino) Methylideneamino] Imidazole-4-Carboxamide Isomerase (Hisa) Length = 243 | Back alignment and structure |
|
| >pdb|2ISS|D Chain D, Structure Of The Plp Synthase Holoenzyme From Thermotoga Maritima Length = 208 | Back alignment and structure |
|
| >pdb|2YWJ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein From Methanocaldococcus Jannaschii Length = 186 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 578 | |||
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 0.0 | |
| 1ka9_H | 200 | Imidazole glycerol phosphtate synthase; riken stru | 1e-98 | |
| 1gpw_B | 201 | Amidotransferase HISH; lyase/transferase, complex | 2e-92 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 3e-88 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 1e-85 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 3e-85 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 6e-83 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 4e-75 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 2e-63 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 2e-09 | |
| 1q7r_A | 219 | Predicted amidotransferase; structural genomics, Y | 1e-51 | |
| 2nv0_A | 196 | Glutamine amidotransferase subunit PDXT; 3-layer(A | 1e-51 | |
| 2iss_D | 208 | Glutamine amidotransferase subunit PDXT; (beta/alp | 2e-45 | |
| 2ywj_A | 186 | Glutamine amidotransferase subunit PDXT; uncharact | 4e-45 | |
| 2ywd_A | 191 | Glutamine amidotransferase subunit PDXT; pyridoxin | 2e-41 | |
| 2abw_A | 227 | PDX2 protein, glutaminase; PLP-synthase, vitamin B | 2e-27 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 6e-24 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 2e-13 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 1e-12 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 2e-12 | |
| 1o1y_A | 239 | Conserved hypothetical protein TM1158; flavodoxin- | 9e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-08 | |
| 3r75_A | 645 | Anthranilate/para-aminobenzoate synthases compone; | 2e-06 | |
| 1wl8_A | 189 | GMP synthase [glutamine-hydrolyzing] subunit A; tr | 1e-05 | |
| 3m3p_A | 250 | Glutamine amido transferase; structural genomics, | 3e-05 | |
| 2vpi_A | 218 | GMP synthase; guanine monophosphate synthetase, ph | 1e-04 | |
| 3l7n_A | 236 | Putative uncharacterized protein; glutamine amidot | 2e-04 | |
| 1qzv_F | 154 | Plant photosystem I: subunit PSAF; photosynthesis, | 4e-04 | |
| 2vxo_A | 697 | GMP synthase [glutamine-hydrolyzing]; proto-oncoge | 5e-04 |
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A Length = 555 | Back alignment and structure |
|---|
Score = 772 bits (1995), Expect = 0.0
Identities = 272/550 (49%), Positives = 358/550 (65%), Gaps = 21/550 (3%)
Query: 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED--ILNANRLIFPGVGAFAAAMDVLN 105
VV ++D +GN++S+ NAI HLG+ ++ V++P+D I +RLI PGVG + +D L
Sbjct: 5 PVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLF 64
Query: 106 KTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVP 165
G + + YIE +P +GI +GLQ LF S E+ GL I + RFD S VP
Sbjct: 65 NRGFEKPIREYIESGKPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEK-PVP 123
Query: 166 QIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDD------NKEWVSSTCNYGD-NFI 218
+IGWN+ +++ D YFVHS+ A+ + + N W + YG FI
Sbjct: 124 EIGWNSCIPSENLFFGLD-PYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFI 182
Query: 219 ASVRRGNVHAVQFHPEKSGDVGLSVLRRFL---------HPKTNIPKKPTEGKALKLAKR 269
A+V + N+ A QFHPEKSG GL+V+ FL + + L +R
Sbjct: 183 AAVNKNNIFATQFHPEKSGKAGLNVIENFLKQQSPPIPNYSAEEKELLMNDYSNYGLTRR 242
Query: 270 VIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNI 329
+IACLDVR ND+GDLVVTKGDQYDVRE + VRNLGKPV+LA++YY++GADE++FLNI
Sbjct: 243 IIACLDVRTNDQGDLVVTKGDQYDVREKSDGKGVRNLGKPVQLAQKYYQQGADEVTFLNI 302
Query: 330 TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389
T FRD PL D PML+VL+ ++ VFVPLTVGGGI+D D +G +LEVAS YFRSGAD
Sbjct: 303 TSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGAD 362
Query: 390 KISIGSDAVYAAEDYLKTGVK-TGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFK 448
K+SIG+DAVYAAE Y + G + G S +E IS+ YG QAVV+S+DP+RVY+ D + K
Sbjct: 363 KVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNK 422
Query: 449 AVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG 508
GPNGE+Y WYQCT+ GGRE R +G +EL +A E LGAGEILLNCID DG G
Sbjct: 423 VFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSG 482
Query: 509 FDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEH 568
+D++LI+ + DAV IPVIASSGAG EHF + F KT A A L AG+FHR E + VKE+
Sbjct: 483 YDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEY 542
Query: 569 LYKEGIEVRI 578
L + G++VR+
Sbjct: 543 LLEHGLKVRM 552
|
| >1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1 Length = 200 | Back alignment and structure |
|---|
Score = 297 bits (763), Expect = 1e-98
Identities = 76/200 (38%), Positives = 107/200 (53%), Gaps = 9/200 (4%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
L+DYG+GN+RS A+ GF + Q P+ A+ L+ PG G F M ++G
Sbjct: 5 ALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQESGF 64
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
E + ++E+ PFLGIC+G+Q+L++ SEE V GLGL+PG V RF + RVPQ+GW
Sbjct: 65 VERVRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAG---RVPQMGW 121
Query: 170 NALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAV 229
NAL+ L H YF +SY + + + G F A + + N+ A
Sbjct: 122 NALEFGGAFAPLT---GRHFYFANSYYGPLTPYS---LGKGEYEGTPFTALLAKENLLAP 175
Query: 230 QFHPEKSGDVGLSVLRRFLH 249
QFHPEKSG GL+ L
Sbjct: 176 QFHPEKSGKAGLAFLALARR 195
|
| >1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B Length = 201 | Back alignment and structure |
|---|
Score = 281 bits (721), Expect = 2e-92
Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 15/204 (7%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQT----PEDILNANRLIFPGVGAFAAAMDVLN 105
+ ++ G GN+ ++ ++ +DV + L PGVG F M L
Sbjct: 3 IGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGEGMRRLR 62
Query: 106 KTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVP 165
+ + + + ++E +R +G+CLG+QLLF+ SEE V GL LI G V + R+P
Sbjct: 63 ENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLR---SRRLP 119
Query: 166 QIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGN 225
+GWN + + + YFVH+YRA+ +++ + +T G+ F ++VR+G
Sbjct: 120 HMGWNEVIFKDTFP------NGYYYFVHTYRAVCEEEHV--LGTTEYDGEIFPSAVRKGR 171
Query: 226 VHAVQFHPEKSGDVGLSVLRRFLH 249
+ QFHPEKS +G +L + +
Sbjct: 172 ILGFQFHPEKSSKIGRKLLEKVIE 195
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 Length = 253 | Back alignment and structure |
|---|
Score = 272 bits (698), Expect = 3e-88
Identities = 116/313 (37%), Positives = 168/313 (53%), Gaps = 62/313 (19%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
+A R+I CLD+ D G VV KG + +R +G PVE+A +Y +EGADEI+
Sbjct: 3 MALRIIPCLDI---DGGAKVVVKGVNFQ--------GIREVGDPVEMAVRYEEEGADEIA 51
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
L+IT + G + ++ +E V +P+ VGGG+R SLE A+ FR
Sbjct: 52 ILDITAAPE---GRATFIDSVKRVAEAVSIPVLVGGGVR-----------SLEDATTLFR 97
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
+GADK+S+ + AV + + ++R +G+Q+ VV+ID +
Sbjct: 98 AGADKVSVNTAAVRNPQ------------LVALLAREFGSQSTVVAIDAKWNG------- 138
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+Y+ V GGRE + A + AK VE+LGAGEILL ID DG
Sbjct: 139 -----------------EYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGT 181
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G G+D++LI+ ++D+V IPVIAS GAG VEHF + A A LAA +FH + + I V
Sbjct: 182 GLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAA-AAGADAVLAASLFHFRVLSIAQV 240
Query: 566 KEHLYKEGIEVRI 578
K +L + G+EVRI
Sbjct: 241 KRYLKERGVEVRI 253
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 Length = 252 | Back alignment and structure |
|---|
Score = 265 bits (680), Expect = 1e-85
Identities = 113/313 (36%), Positives = 163/313 (52%), Gaps = 64/313 (20%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR++ CLDV G V KG + +R+ G PVE AR Y + GADE+
Sbjct: 3 LAKRIVPCLDV---HAG--RVVKGVNFV--------NLRDAGDPVEAARAYDEAGADELV 49
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+I+ + +L V+ +E VF+PLTVGGG+R SLE A +
Sbjct: 50 FLDISATHE---ERAILLDVVARVAERVFIPLTVGGGVR-----------SLEDARKLLL 95
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
SGADK+S+ S AV E + +++ +G QAVV++ID R
Sbjct: 96 SGADKVSVNSAAVRRPE------------LIRELADHFGAQAVVLAIDARWRG------- 136
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+ + V GGR + A E A +LGAGEILL +D DG
Sbjct: 137 -----------------DFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGT 179
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
+G+D+ L +++++AV +PVIAS GAG +EHF + F + A AALAA +FH E+PI +
Sbjct: 180 KEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAF-QAGAEAALAASVFHFGEIPIPKL 238
Query: 566 KEHLYKEGIEVRI 578
K +L ++G+ VR+
Sbjct: 239 KRYLAEKGVHVRL 251
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A Length = 253 | Back alignment and structure |
|---|
Score = 264 bits (678), Expect = 3e-85
Identities = 107/313 (34%), Positives = 156/313 (49%), Gaps = 64/313 (20%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR+IACLDV+ D V KG ++ +R+ G PVEL + Y + G DE+
Sbjct: 2 LAKRIIACLDVK-----DGRVVKGSNFE--------NLRDSGDPVELGKFYSEIGIDELV 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT + ML+++ +E + +P TVGGGI E ASE
Sbjct: 49 FLDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIH-----------DFETASELIL 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
GADK+SI + AV + QI++ +G+QAVVV+ID +RV
Sbjct: 95 RGADKVSINTAAVENPS------------LITQIAQTFGSQAVVVAIDAKRV-------- 134
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+ G++ I + VE GAGEILL ID DG
Sbjct: 135 -----------DGE-----FMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT 178
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D ++I+ + ++P+IAS GAG +EHF + F A AALAA +FH +E+ ++ +
Sbjct: 179 KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-LAGADAALAASVFHFREIDVREL 237
Query: 566 KEHLYKEGIEVRI 578
KE+L K G+ VR+
Sbjct: 238 KEYLKKHGVNVRL 250
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 259 bits (663), Expect = 6e-83
Identities = 83/316 (26%), Positives = 130/316 (41%), Gaps = 67/316 (21%)
Query: 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGK-PVELARQYYKEGADEISF 326
+RV+ +D + D +V T +N G + + K GA EI
Sbjct: 2 QRVVVAIDAKRVDGEFMVFTHSG------------KKNTGILLRDWVVEVEKRGAGEILL 49
Query: 327 LNIT---GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383
+I + +++R +P+ GG +E E
Sbjct: 50 TSIDRDGTKSGY------DTEMIRFVRPLTTLPIIASGGAG-----------KMEHFLEA 92
Query: 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG-NQAVVVSIDPRRVYITHP 442
F +GADK S + D + E + + G QAVVV+ID +RV
Sbjct: 93 FLAGADKALAASVFHFREID--------MRELKEYLKKHGGSGQAVVVAIDAKRV----- 139
Query: 443 NDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDC 502
+ + G++ I + VE GAGEILL ID
Sbjct: 140 --------------DGE-----FMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDR 180
Query: 503 DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPI 562
DG G+D ++I+ + ++P+IAS GAG +EHF + F A AALAA +FH +E+ +
Sbjct: 181 DGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-LAGADAALAASVFHFREIDM 239
Query: 563 QSVKEHLYKEGIEVRI 578
+ +KE+L K G+ VR+
Sbjct: 240 RELKEYLKKHGVNVRL 255
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A Length = 237 | Back alignment and structure |
|---|
Score = 237 bits (608), Expect = 4e-75
Identities = 70/277 (25%), Positives = 118/277 (42%), Gaps = 54/277 (19%)
Query: 302 EVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGG 361
V + E +Y + D + ++IT + ++ + N + +
Sbjct: 7 IVDDATNGREAVEKYKELKPDIV-TMDITMPEM---NGIDAIKEIMKIDPNAKIIVCSAM 62
Query: 362 GIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421
G + + E ++GA + + AV + QI++
Sbjct: 63 GQQ-------------AMVIEAIKAGAKDFIVNTAAVENPS------------LITQIAQ 97
Query: 422 VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAY 481
+G+QAVVV+ID +RV + G++ I
Sbjct: 98 TFGSQAVVVAIDAKRV-------------------DGE-----FMVFTYSGKKNTGILLR 133
Query: 482 ELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVF 541
+ VE GAGEILL ID DG G+D ++I+ + ++P+IAS GAG +EHF + F
Sbjct: 134 DWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF 193
Query: 542 RKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578
A AALAA +FH +E+ ++ +KE+L K G+ VR+
Sbjct: 194 -LAGADAALAASVFHFREIDVRELKEYLKKHGVNVRL 229
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A Length = 247 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 2e-09
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 423 YGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYE 482
+QAVVV+ID +RV +GE + G++ I +
Sbjct: 4 SSSQAVVVAIDAKRV--------------------DGE----FMVFTYSGKKNTGILLRD 39
Query: 483 LAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFR 542
VE GAGEILL ID DG G+D ++I+ + ++P+IAS GAG +EHF + F
Sbjct: 40 WVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL 99
|
| >1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 Length = 219 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 1e-51
Identities = 50/223 (22%), Positives = 80/223 (35%), Gaps = 22/223 (9%)
Query: 43 ATSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMD 102
S+ + +L G VR AI G V+ E + + L+ PG G
Sbjct: 19 YFQSNMKIGVLGLQ-GAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPG-GESTTMRR 76
Query: 103 VLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGF 162
++++ G+ E L + +P G C GL LL + LGL+ V R
Sbjct: 77 LIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYD-EPHLGLMDITVER------- 128
Query: 163 RVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVR 222
G + I F+ + + + D V Y D +A R
Sbjct: 129 --NSFGRQRESFEAELSIKGVGDGFVGVFIRAPHIVEAGD---GVDVLATYNDRIVA-AR 182
Query: 223 RGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPTEGKALK 265
+G FHPE + D +++ FL N+ K+ +LK
Sbjct: 183 QGQFLGCSFHPELTDD--HRLMQYFL----NMVKEAKMASSLK 219
|
| >2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B* Length = 196 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 1e-51
Identities = 43/199 (21%), Positives = 72/199 (36%), Gaps = 18/199 (9%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ +L G VR +AI G V+ PE + + LI PG G +++
Sbjct: 4 IGVLGLQ-GAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPG-GESTTMRRLIDTYQF 61
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
E L + + +P G C GL +L + LGL+ VV R G +V
Sbjct: 62 MEPLREFAAQGKPMFGTCAGLIILAKEI-AGSDNPHLGLLNVVVERNSF--GRQVDSFEA 118
Query: 170 NALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAV 229
+ I F+ + + + + V + +A ++G
Sbjct: 119 DLT-------IKGLDEPFTGVFIRAPHILEAGE---NVEVLSEHNGRIVA-AKQGQFLGC 167
Query: 230 QFHPEKSGDVGLSVLRRFL 248
FHPE + D V + F+
Sbjct: 168 SFHPELTED--HRVTQLFV 184
|
| >2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima} Length = 208 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 2e-45
Identities = 50/206 (24%), Positives = 79/206 (38%), Gaps = 31/206 (15%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ +L G+VR A+ LG V+ PE + + LI PG G + +L + M
Sbjct: 23 IGVLGV-QGDVREHVEALHKLGVETLIVKLPEQLDMVDGLILPG-GESTTMIRILKEMDM 80
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSS-------NGF 162
E L I P C G+ LL + + LG++ V R
Sbjct: 81 DEKLVERINNGLPVFATCAGVILLAKRIKNYS-QEKLGVLDITVERNAYGRQVESFETFV 139
Query: 163 RVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVR 222
+P +G + F+ + R + + N E + +T +Y V+
Sbjct: 140 EIPAVGKDPF---------------RAIFIRAPRIVETGKNVE-ILATYDY---DPVLVK 180
Query: 223 RGNVHAVQFHPEKSGDVGLSVLRRFL 248
GN+ A FHPE + D L + R FL
Sbjct: 181 EGNILACTFHPELTDD--LRLHRYFL 204
|
| >2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii} Length = 186 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 4e-45
Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 21/199 (10%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ +L G+V AI+ G+ K V+ ED+ + LI PG G A ++ K G+
Sbjct: 3 IGVLAI-QGDVEEHEEAIKKAGYEAKKVKRVEDLEGIDALIIPG-GESTAIGKLMKKYGL 60
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
E + + P LG C G+ LL + + N L L+ V R G
Sbjct: 61 LEKI---KNSNLPILGTCAGMVLLSKGTGINQI--LLELMDITVKR---------NAYGR 106
Query: 170 NALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAV 229
K+ E D + V+ D+ E + I V++G A+
Sbjct: 107 QVDSFEKEIEFKDLGKVYGVFIRAPVVDKILSDDVE----VIARDGDKIVGVKQGKYMAL 162
Query: 230 QFHPEKSGDVGLSVLRRFL 248
FHPE S D G V + F+
Sbjct: 163 SFHPELSED-GYKVYKYFV 180
|
| >2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} Length = 191 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 2e-41
Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 18/192 (9%)
Query: 58 GNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYI 117
G+ R + A++ LG K+V+ E + LI PG G + + G+ + + +
Sbjct: 12 GDFREHKEALKRLGIEAKEVRKKEHLEGLKALIVPG-GESTTIGKLAREYGIEDEVRKRV 70
Query: 118 EK-DRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK 176
E+ G C G L + LG++ V R + G +V +
Sbjct: 71 EEGSLALFGTCAGAIWLAKEIVGYPEQPRLGVLEAWVERN--AFGRQVESFEEDLE---- 124
Query: 177 DSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKS 236
++ +G H F+ + + E ++ + VR+G V A FHPE +
Sbjct: 125 ----VEGLGSFHGVFIRAPVFRRLGEGVEVLA----RLGDLPVLVRQGKVLASSFHPELT 176
Query: 237 GDVGLSVLRRFL 248
D + R FL
Sbjct: 177 EDPR--LHRYFL 186
|
| >2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G Length = 227 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 2e-27
Identities = 37/205 (18%), Positives = 64/205 (31%), Gaps = 21/205 (10%)
Query: 58 GNVRSVRNAIRHLG---FGIKDVQTPEDILNANRLIFPGVGAFAAAMD-VLNKTGMAEAL 113
G+ N L I V+ D+ + L+ PG + + AL
Sbjct: 13 GDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAYENDTLYNAL 72
Query: 114 CA-YIEKDRPFLGICLGLQLLFQSSEENGPVNG------LGLIPGVVGRFDSSNGFRVPQ 166
+P G C G LL ++ E + G + + R +
Sbjct: 73 VHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGS---QND 129
Query: 167 IGWNALQITKDSEILDDVGD-HHVYFVHSYRAMPSDDNKEWVSSTCN--YGDNFIASVRR 223
+L I DS + + + D + +++ + YG N IA+V +
Sbjct: 130 SFICSLNIISDSSAFKKDLTAACIRAPYIREILS--DEVKVLATFSHESYGPNIIAAVEQ 187
Query: 224 GNVHAVQFHPEKSGDVGLSVLRRFL 248
N FHPE + + F
Sbjct: 188 NNCLGTVFHPELLPH--TAFQQYFY 210
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} Length = 260 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 6e-24
Identities = 46/315 (14%), Positives = 88/315 (27%), Gaps = 66/315 (20%)
Query: 269 RVIACLDVRANDKGDLVV--TKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISF 326
+ I C+D+ V G +E + + A+ Y
Sbjct: 2 KFIGCIDL----HNGEVKQIVGGTLTSKKEDVPKTNFVSQHPSSYYAKLYKDRDVQGCHV 57
Query: 327 LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386
+ + D R + L VGGGI D E+
Sbjct: 58 IKLGPNND---------DAAREALQESPQFLQVGGGINDTNCL------------EWL-K 95
Query: 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVE 446
A K+ + S LE+++ + G +VV + R+
Sbjct: 96 WASKVIVTSWLF-------TKEGHFQLKRLERLTELCGKDRIVVDLSCRK---------- 138
Query: 447 FKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506
+G + +N + + E L++ D +G
Sbjct: 139 ---------TQDGR----WIVAMNKWQTLTDLELNADTFRELRKYTNEFLIHAADVEGLC 185
Query: 507 KGFDMDLIKLISDAVS----IPVIASSGAGAVEHFSDVFR----KTNASAALAAGIFHRK 558
G D L+ + + + ++ + GA +V+ V K + + + IF
Sbjct: 186 GGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGN 245
Query: 559 EVPIQSVKEHLYKEG 573
V + K+G
Sbjct: 246 LVKFEDCCRWNEKQG 260
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* Length = 244 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 53/230 (23%)
Query: 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDF 366
G V+ A + ++GA+ I +++ G ++L + V + + GGIRD
Sbjct: 31 GSAVDAALGWQRDGAEWIHLVDLDA----AFGRGSNHELLAEVVGKLDVQVELSGGIRD- 85
Query: 367 TDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426
E + +G ++++G+ A+ E+ ++ +G+Q
Sbjct: 86 ----------DESLAAALATGCARVNVGTAAL---EN---------PQWCARVIGEHGDQ 123
Query: 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKA 486
V V +D V++ D W +GG +++ +
Sbjct: 124 -VAVGLD----------------VQIIDGEHRLRGRGW---ETDGGD------LWDVLER 157
Query: 487 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEH 536
++ G ++ I DG G ++DL+ ++D PVIAS G +++
Sbjct: 158 LDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDD 207
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A Length = 244 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 1e-12
Identities = 40/230 (17%), Positives = 88/230 (38%), Gaps = 57/230 (24%)
Query: 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDF 366
G P+E A + + GA+ + +++ G ++ ++ + + + + GGIRD
Sbjct: 32 GSPLEAALAWQRSGAEWLHLVDLDA----AFGTGDNRALIAEVAQAMDIKVELSGGIRD- 86
Query: 367 TDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426
+ + +G ++++G+ A+ E + ++ +G++
Sbjct: 87 ----------DDTLAAALATGCTRVNLGTAAL---ET---------PEWVAKVIAEHGDK 124
Query: 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKA 486
+ V +D R + R W T +GG YE
Sbjct: 125 -IAVGLDVRGTTL---------RGR-----------GW---TRDGGD------LYETLDR 154
Query: 487 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEH 536
+ G ++ I DG +G +++L+K + A PV+AS G +++
Sbjct: 155 LNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDD 204
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A Length = 241 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 2e-12
Identities = 47/246 (19%), Positives = 80/246 (32%), Gaps = 57/246 (23%)
Query: 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTD 368
PVEL + +EG I ++++ + L VL SE + +GGGIR
Sbjct: 32 PVELVEKLIEEGFTLIHVVDLSNAIE---NSGENLPVLEKLSE-FAEHIQIGGGIRSLDY 87
Query: 369 ANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAV 428
A + + G + + S + ED S L+ + +
Sbjct: 88 AE-----------KLRKLGYRRQIVSSKVL---ED---------PSFLKSLRE-IDVE-P 122
Query: 429 VVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVE 488
V S+D R + G I L K ++
Sbjct: 123 VFSLDTRGGRVA----------------------------FKGWLAEEEIDPVSLLKRLK 154
Query: 489 DLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASA 548
+ G EI+ I+ DG + D L K I+ + V+A+ G + + +
Sbjct: 155 EYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETN 214
Query: 549 ALAAGI 554
L G+
Sbjct: 215 GLLKGV 220
|
| >1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 Length = 239 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 9e-09
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 24/126 (19%)
Query: 111 EALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWN 170
+ + ++K+ PFLGICLG Q+L + LG V R + +IGW
Sbjct: 84 QLIEEILKKEIPFLGICLGSQMLAKV---------LG---ASVYRGKNG-----EEIGWY 126
Query: 171 ALQITKDSEILDDVGDH-HVYFVHSYR-AMPSDDNKEWVSSTCNYGDNFIASVRRGNVHA 228
++ D++ + D V+ H +P V ++ Y G
Sbjct: 127 FVEKVSDNKFFREFPDRLRVFQWHGDTFDLP--RRATRVFTSEKYE---NQGFVYGKAVG 181
Query: 229 VQFHPE 234
+QFH E
Sbjct: 182 LQFHIE 187
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 7e-08
Identities = 50/357 (14%), Positives = 112/357 (31%), Gaps = 90/357 (25%)
Query: 20 RTNEFYKIQNRVKFKSPRALSIRATSSDSVVTLLDYGAGNVRSVRNAIRH--LGFGIKDV 77
T + + ++R+ + + + S L +R +N + LG G K
Sbjct: 108 MTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-KTW 165
Query: 78 QTPEDILNANRLI--FPG------VGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLG 129
+ + + ++ + + VL M + L I+ +
Sbjct: 166 VALD-VCLSYKVQCKMDFKIFWLNLKNCNSPETVLE---MLQKLLYQIDPN--------W 213
Query: 130 LQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHV 189
SS N + + I + R S + N L + L +V +
Sbjct: 214 TSRSDHSS--NIKLR-IHSIQAELRRLLKSKPYE------NCLLV------LLNVQNAKA 258
Query: 190 --YFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRF 247
F S + + + K ++ + + H++ P++ S+L ++
Sbjct: 259 WNAFNLSCKILLTTRFK----QVTDFLSAATTTHISLDHHSMTLTPDEV----KSLLLKY 310
Query: 248 LH-PKTNIPKKPTEGKALKLAKRVIACLDVRANDKGDLVVT----KGDQYDVREHTKENE 302
L ++P++ +L+ +IA + + D + T K D E+
Sbjct: 311 LDCRPQDLPREVLTTNPRRLS--IIA-----ESIR-DGLATWDNWKHVNCDKLTTIIESS 362
Query: 303 VRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTV 359
+ L +P E R+ + L++ FP + +P +
Sbjct: 363 LNVL-EPAEY-RKMFDR-------LSV-----FP--------------PSAHIPTIL 391
|
| >3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* Length = 645 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 37/226 (16%), Positives = 70/226 (30%), Gaps = 41/226 (18%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDI-LNANRLIFPGVG-----AFAAAMDV 103
++D + + LG + + + L ++ G G
Sbjct: 449 ALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAVDLARYDVVVMGPGPGDPSDAGDPRIA 508
Query: 104 LNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFR 163
+ + ++ +PF+ +CL Q+L LG + R +
Sbjct: 509 RLYAWLRHLI----DEGKPFMAVCLSHQIL---------NAILG---IPLVRRE------ 546
Query: 164 VPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKE-----WVSSTCNYGDNFI 218
VP G EI V F ++Y A D + V+ + + +
Sbjct: 547 VPNQG-------IQVEIDLFGQRERVGFYNTYVAQTVRDEMDVDGVGTVAISRDPRTGEV 599
Query: 219 ASVRRGNVHAVQFHPEKSGDV-GLSVLRRFLHPKTNIPKKPTEGKA 263
++R ++QFH E V G +L + K+ T A
Sbjct: 600 HALRGPTFSSMQFHAESVLTVDGPRILGEAITHAIRREKRMTALTA 645
|
| >1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A Length = 189 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 21/130 (16%)
Query: 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEIL 181
P LGICLG QL+ G G VGR + + + ++I + EI
Sbjct: 74 PILGICLGHQLI---------AKFFG---GKVGRGEKA------EYSLVEIEIIDEXEIF 115
Query: 182 DDVGDHH-VYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPE-KSGDV 239
+ V+ H + ++ + + ++ VQFHPE +
Sbjct: 116 KGLPKRLKVWESHMDEVKELPPKFKILARSETCPIEAMKHEEL-PIYGVQFHPEVAHTEK 174
Query: 240 GLSVLRRFLH 249
G +LR F
Sbjct: 175 GEEILRNFAK 184
|
| >3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* Length = 250 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 25/135 (18%), Positives = 40/135 (29%), Gaps = 40/135 (29%)
Query: 111 EALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWN 170
+ + + P +G CLG QLL ++ +G G V +IGW
Sbjct: 73 ALIRDAVAQRVPVIGHCLGGQLLAKA---------MG---GEVTDSPH------AEIGWV 114
Query: 171 ALQIT---KDSEILDDVGDHHVYFVHSYR-AMPSDDNKEWV--SSTCN-----YGDNFIA 219
+ E L + ++ H ++P + S C D I
Sbjct: 115 RAWPQHVPQALEWLGTWDELELFEWHYQTFSIP--PGAVHILRSEHCANQAYVLDDLHI- 171
Query: 220 SVRRGNVHAVQFHPE 234
Q H E
Sbjct: 172 --------GFQCHIE 178
|
| >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 38/138 (27%)
Query: 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEIL 181
P LGIC G+Q++ + G G V + + G + + +
Sbjct: 98 PVLGICYGMQMMNKV---------FG---GTVHKKSVR------EDGVFNISVDNTCSLF 139
Query: 182 DDVGDHH-VYFVHSYR--AMPSDDNKEWVSSTCNYGDNFIASV--RRGNVHAVQFHPEKS 236
+ V H + D + V+ + N +A + ++ QFHPE
Sbjct: 140 RGLQKEEVVLLTHGDSVDKVA--DGFKVVARS----GNIVAGIANESKKLYGAQFHPE-- 191
Query: 237 GDV-----GLSVLRRFLH 249
V G +L+ FL+
Sbjct: 192 --VGLTENGKVILKNFLY 207
|
| >3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} Length = 236 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 26/175 (14%), Positives = 54/175 (30%), Gaps = 37/175 (21%)
Query: 113 LCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNAL 172
+ + ++ +G+CLG QL+ + +IG +
Sbjct: 77 IQKAAKSEKIIVGVCLGAQLMGVAYG------------ADYLHSPK------KEIGNYLI 118
Query: 173 QIT---KDSEILDDVGDH-HVYFVHSYR-AMPSDDNKEWV--SSTCNYGDNFIASVRRG- 224
+T K L D D V H +P D + + S C ++ G
Sbjct: 119 SLTEAGKMDSYLSDFSDDLLVGHWHGDMPGLP--DKAQVLAISQGCPR-----QIIKFGP 171
Query: 225 NVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPKKPTEGKALKLAKRVIACLDVRAN 279
+A Q H E ++ + + ++ + ++ A+ + N
Sbjct: 172 KQYAFQCHLE----FTPELVAALIAQEDDLDTQSQTETYVQTAEEMQTFDYSSMN 222
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 40.3 bits (93), Expect = 4e-04
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 22 NEFYKIQNRVKFKSPR---ALSIRAT 44
K+Q +K + AL+I+AT
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKAT 45
|
| >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 38/138 (27%)
Query: 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEIL 181
P LGIC G+Q++ ++ G G V + + G + + +
Sbjct: 103 PVLGICYGMQMM---NKVFG---------GTVHKKSVR------EDGVFNISVDNTCSLF 144
Query: 182 DDVGDHH-VYFVHSYR--AMPSDDNKEWVSSTCNYGDNFIASV--RRGNVHAVQFHPEKS 236
+ V H + D + V+ + N +A + ++ QFHPE
Sbjct: 145 RGLQKEEVVLLTHGDSVDKVA--DGFKVVARS----GNIVAGIANESKKLYGAQFHPE-- 196
Query: 237 GDV-----GLSVLRRFLH 249
V G +L+ FL+
Sbjct: 197 --VGLTENGKVILKNFLY 212
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 578 | |||
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 100.0 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 100.0 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 100.0 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 100.0 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 100.0 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 100.0 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 100.0 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 100.0 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 100.0 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 100.0 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 99.98 | |
| 4gud_A | 211 | Imidazole glycerol phosphate synthase subunit His; | 99.97 | |
| 1ka9_H | 200 | Imidazole glycerol phosphtate synthase; riken stru | 99.96 | |
| 1gpw_B | 201 | Amidotransferase HISH; lyase/transferase, complex | 99.96 | |
| 2vpi_A | 218 | GMP synthase; guanine monophosphate synthetase, ph | 99.92 | |
| 1qdl_B | 195 | Protein (anthranilate synthase (TRPG-SUBUNIT)); tr | 99.92 | |
| 1wl8_A | 189 | GMP synthase [glutamine-hydrolyzing] subunit A; tr | 99.92 | |
| 2a9v_A | 212 | GMP synthase; structural genomics, joint center fo | 99.92 | |
| 3tqi_A | 527 | GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 | 99.91 | |
| 2ywd_A | 191 | Glutamine amidotransferase subunit PDXT; pyridoxin | 99.91 | |
| 3uow_A | 556 | GMP synthetase; structural genomics consortium, SG | 99.91 | |
| 2ywj_A | 186 | Glutamine amidotransferase subunit PDXT; uncharact | 99.9 | |
| 2ywb_A | 503 | GMP synthase [glutamine-hydrolyzing]; GMP syntheta | 99.9 | |
| 2iss_D | 208 | Glutamine amidotransferase subunit PDXT; (beta/alp | 99.9 | |
| 3d54_D | 213 | Phosphoribosylformylglycinamidine synthase 1; alph | 99.9 | |
| 1i1q_B | 192 | Anthranilate synthase component II; tryptophan bio | 99.9 | |
| 2nv0_A | 196 | Glutamine amidotransferase subunit PDXT; 3-layer(A | 99.9 | |
| 3fij_A | 254 | LIN1909 protein; 11172J, uncharacterized protein, | 99.89 | |
| 1gpm_A | 525 | GMP synthetase, XMP aminase; class I glutamine ami | 99.89 | |
| 1q7r_A | 219 | Predicted amidotransferase; structural genomics, Y | 99.89 | |
| 3l7n_A | 236 | Putative uncharacterized protein; glutamine amidot | 99.88 | |
| 1o1y_A | 239 | Conserved hypothetical protein TM1158; flavodoxin- | 99.88 | |
| 2abw_A | 227 | PDX2 protein, glutaminase; PLP-synthase, vitamin B | 99.88 | |
| 1a9x_B | 379 | Carbamoyl phosphate synthetase (small chain); amid | 99.88 | |
| 3m3p_A | 250 | Glutamine amido transferase; structural genomics, | 99.88 | |
| 2vxo_A | 697 | GMP synthase [glutamine-hydrolyzing]; proto-oncoge | 99.87 | |
| 3r75_A | 645 | Anthranilate/para-aminobenzoate synthases compone; | 99.86 | |
| 2w7t_A | 273 | CTP synthetase, putative cytidine triphosphate syn | 99.82 | |
| 2v4u_A | 289 | CTP synthase 2; pyrimidine biosynthesis, glutamine | 99.8 | |
| 1l9x_A | 315 | Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO | 99.79 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 99.78 | |
| 3nva_A | 535 | CTP synthase; rossman fold, nucleotide binding, LI | 99.75 | |
| 1vco_A | 550 | CTP synthetase; tetramer, riken structural genomic | 99.74 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.74 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.72 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 99.65 | |
| 1s1m_A | 545 | CTP synthase; CTP synthetase, UTP:ammonia ligase ( | 99.65 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 99.65 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 99.63 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 99.62 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 99.6 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.58 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.56 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 99.45 | |
| 2h2w_A | 312 | Homoserine O-succinyltransferase; TM0881, (EC 2.3. | 99.44 | |
| 2vdj_A | 301 | Homoserine O-succinyltransferase; methionine biosy | 99.41 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 99.4 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 99.33 | |
| 3ugj_A | 1303 | Phosphoribosylformylglycinamidine synthase; amidot | 99.3 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 99.28 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 99.28 | |
| 1fy2_A | 229 | Aspartyl dipeptidase; serine protease, catalytic t | 99.27 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 99.25 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 99.19 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 99.15 | |
| 3l4e_A | 206 | Uncharacterized peptidase LMO0363; hypothetical pr | 99.15 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 99.11 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 99.09 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.06 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 99.05 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 99.03 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 99.01 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.98 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 98.97 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.97 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 98.93 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 98.91 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.9 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 98.89 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 98.86 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 98.84 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 98.84 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 98.83 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 98.82 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 98.82 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 98.81 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 98.8 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 98.78 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 98.76 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 98.75 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.72 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 98.72 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.71 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 98.71 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 98.69 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 98.67 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 98.67 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 98.67 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 98.65 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 98.64 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 98.62 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 98.61 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.6 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 98.6 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 98.59 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 98.59 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 98.56 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 98.55 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 98.54 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 98.53 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 98.53 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.52 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.51 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 98.49 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 98.46 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 98.45 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 98.45 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 98.44 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 98.43 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 98.41 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 98.4 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 98.4 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 98.38 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 98.38 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 98.36 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 98.36 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 98.35 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 98.34 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 98.34 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 98.34 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 98.33 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 98.33 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 98.31 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 98.3 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.29 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 98.29 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 98.29 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 98.28 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 98.28 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 98.28 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 98.27 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 98.26 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 98.26 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 98.26 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 98.25 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 98.23 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 98.22 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 98.21 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.16 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 98.15 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 98.15 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 98.15 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 98.14 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 98.14 | |
| 1oi4_A | 193 | Hypothetical protein YHBO; PFPI/THIJ family, compl | 98.12 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 98.07 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 98.05 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 98.04 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 98.03 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 98.03 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 98.02 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 98.01 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 98.0 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 98.0 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 97.99 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 97.96 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 97.94 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 97.93 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 97.93 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 97.91 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 97.91 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 97.9 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.89 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 97.89 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 97.88 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.88 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 97.87 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 97.84 | |
| 4hcj_A | 177 | THIJ/PFPI domain protein; structural genomics, PSI | 97.84 | |
| 3l18_A | 168 | Intracellular protease I; gatase1_PFPI_LIKE, hydro | 97.83 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 97.74 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 97.73 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 97.73 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 97.71 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 97.68 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 97.68 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 97.66 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.65 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 97.64 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 97.64 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 97.63 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 97.63 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 97.6 | |
| 2vrn_A | 190 | Protease I, DR1199; cysteine sulfenic acid, DJ-1/T | 97.54 | |
| 2ab0_A | 205 | YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase | 97.54 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.54 | |
| 2rk3_A | 197 | Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha | 97.54 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 97.47 | |
| 4e08_A | 190 | DJ-1 beta; flavodoxin-like fold, stress response, | 97.46 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 97.46 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 97.45 | |
| 3cne_A | 175 | Putative protease I; structural genomics, PSI-2, M | 97.45 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 97.44 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 97.42 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 97.42 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 97.41 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 97.4 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 97.38 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 97.36 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 97.36 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 97.35 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 97.34 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 97.3 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 97.3 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 97.29 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 97.28 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 97.26 | |
| 2fex_A | 188 | Conserved hypothetical protein; structural genomic | 97.26 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 97.26 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 97.23 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 97.23 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 97.22 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 97.21 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 97.2 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 97.19 | |
| 3er6_A | 209 | Putative transcriptional regulator protein; struct | 97.19 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 97.18 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 97.17 | |
| 3efe_A | 212 | THIJ/PFPI family protein; structural GEN csgid, ce | 97.15 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 97.14 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 97.12 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 97.09 | |
| 3ot1_A | 208 | 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate | 97.08 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 97.06 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 97.04 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 97.04 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 97.04 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 97.03 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 97.02 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 97.0 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 96.98 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 96.97 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 96.95 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 96.94 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 96.93 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 96.92 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 96.92 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 96.87 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 96.86 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 96.84 | |
| 3f5d_A | 206 | Protein YDEA; unknow protein, PSI-II, nysgrc, stru | 96.78 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 96.76 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 96.76 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 96.75 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 96.75 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 96.75 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 96.73 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 96.71 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 96.69 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 96.66 | |
| 3uk7_A | 396 | Class I glutamine amidotransferase-like domain-CO | 96.65 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 96.64 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 96.63 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 96.63 | |
| 3l3b_A | 242 | ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, | 96.62 | |
| 3en0_A | 291 | Cyanophycinase; serine protease, beta peptide spec | 96.62 | |
| 3uk7_A | 396 | Class I glutamine amidotransferase-like domain-CO | 96.6 | |
| 3noq_A | 231 | THIJ/PFPI family protein; DJ-1 superfamily, isocya | 96.58 | |
| 3fse_A | 365 | Two-domain protein containing DJ-1/THIJ/PFPI-like | 96.58 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 96.57 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 96.57 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 96.55 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 96.54 | |
| 3mgk_A | 211 | Intracellular protease/amidase related enzyme (THI | 96.5 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 96.5 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.49 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 96.48 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 96.46 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 96.46 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 96.45 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 96.45 | |
| 3gra_A | 202 | Transcriptional regulator, ARAC family; transcript | 96.45 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 96.42 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 96.41 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 96.4 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 96.38 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 96.37 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 96.36 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 96.36 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 96.35 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 96.34 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 96.32 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 96.31 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 96.31 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 96.3 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 96.28 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 96.27 | |
| 1vhq_A | 232 | Enhancing lycopene biosynthesis protein 2; structu | 96.27 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 96.27 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 96.26 | |
| 1u9c_A | 224 | APC35852; structural genomics, protein structure i | 96.25 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 96.24 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.24 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 96.23 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 96.22 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 96.22 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 96.2 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 96.2 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 96.19 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 96.18 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 96.18 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 96.17 | |
| 3ewn_A | 253 | THIJ/PFPI family protein; monomer, PSI nysgrc, str | 96.16 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 96.14 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 96.13 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 96.13 | |
| 3kkl_A | 244 | Probable chaperone protein HSP33; peptidase, heat | 96.13 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 96.11 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 96.11 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 96.11 | |
| 3ttv_A | 753 | Catalase HPII; heme orientation, oxidoreductase; H | 96.11 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 96.09 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 96.07 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 96.06 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 96.04 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 96.04 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 96.04 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 96.04 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 96.03 | |
| 1rw7_A | 243 | YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe | 96.02 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 96.02 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 96.01 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 96.01 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 96.0 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 95.99 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 95.97 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 95.96 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 95.95 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 95.95 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 95.94 | |
| 3n7t_A | 247 | Macrophage binding protein; seattle structural gen | 95.92 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 95.92 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 95.9 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 95.88 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 95.88 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 95.88 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 95.86 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 95.86 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 95.85 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 95.84 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 95.8 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 95.8 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 95.78 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 95.76 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 95.75 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 95.75 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 95.74 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 95.73 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 95.73 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 95.71 | |
| 3ej6_A | 688 | Catalase-3; heme, hydrogen iron, metal-binding, ox | 95.71 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 95.71 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 95.64 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 95.64 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 95.6 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 95.57 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 95.56 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 95.56 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 95.53 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 95.53 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 95.52 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 95.5 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 95.5 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 95.49 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 95.49 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 95.48 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 95.48 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 95.47 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 95.46 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 95.44 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 95.43 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 95.41 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 95.39 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 95.38 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 95.37 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 95.36 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 95.36 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 95.36 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 95.36 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 95.36 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 95.32 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 95.28 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 95.28 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 95.27 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 95.26 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 95.22 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 95.22 | |
| 1sy7_A | 715 | Catalase 1; heme oxidation, singlet oxygen, oxidor | 95.21 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 95.21 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 95.2 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 95.19 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 95.15 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 95.14 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 95.07 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 95.07 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 95.07 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 95.04 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 95.0 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 94.98 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 94.97 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 94.94 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 94.91 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 94.9 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 94.89 | |
| 1n57_A | 291 | Chaperone HSP31, protein YEDU; alpha-beta sandwich | 94.88 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 94.86 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 94.84 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 94.82 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 94.76 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 94.76 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 94.68 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 94.6 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 94.59 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 94.52 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 94.48 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 94.39 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 94.28 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 94.24 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 94.21 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 94.2 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 94.14 | |
| 3bhn_A | 236 | THIJ/PFPI domain protein; structural genomics, joi | 94.05 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 94.03 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 93.99 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 93.81 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 93.75 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 93.64 | |
| 2iuf_A | 688 | Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen | 93.61 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 93.55 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 93.51 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 93.43 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 93.38 | |
| 4hnl_A | 421 | Mandelate racemase/muconate lactonizing enzyme; de | 93.32 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 93.24 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 93.21 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 93.04 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 93.01 | |
| 3tml_A | 288 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 92.98 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 92.85 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 92.8 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 92.64 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 92.51 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 92.48 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 92.46 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 92.39 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 92.38 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 92.37 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 92.26 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 92.14 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 92.07 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 92.04 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 92.04 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 92.02 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 91.94 | |
| 1o60_A | 292 | 2-dehydro-3-deoxyphosphooctonate aldolase; structu | 91.88 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 91.83 | |
| 4gdh_A | 194 | DJ-1, uncharacterized protein C22E12.03C; unknown | 91.78 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 91.62 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 91.47 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 91.38 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 91.02 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 90.98 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 90.97 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 90.95 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 90.3 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 90.2 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 90.03 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 90.01 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 89.99 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 89.73 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 89.66 | |
| 2qkf_A | 280 | 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; | 89.66 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 89.36 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 89.3 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 89.19 | |
| 3luf_A | 259 | Two-component system response regulator/ggdef doma | 89.18 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 89.17 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 88.93 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 88.93 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 88.82 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 88.73 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 88.7 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 88.46 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 88.41 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 88.16 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 88.09 | |
| 4hpn_A | 378 | Putative uncharacterized protein; enolase, enzyme | 88.08 | |
| 4h1z_A | 412 | Enolase Q92ZS5; dehydratase, magnesium binding sit | 87.9 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 87.83 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 87.68 |
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-87 Score=744.14 Aligned_cols=529 Identities=51% Similarity=0.890 Sum_probs=438.0
Q ss_pred CcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC--CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEE
Q 045794 47 DSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED--ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFL 124 (578)
Q Consensus 47 ~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d--l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIl 124 (578)
.++|+|+|++++++.++.++|+++|+++.+++.+++ +.++||||||||+++......+....+.+.++++++.++|+|
T Consensus 4 m~~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~~~~~l~~~DglILpGgG~~~~~~~~l~~~~~~~~i~~~~~~g~PiL 83 (555)
T 1jvn_A 4 MPVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPIM 83 (555)
T ss_dssp SCEEEEECCSCSCCHHHHHHHHHTTCEEEEESSGGGCCSTTCSCEEEEECSCHHHHHHHHHHTTCHHHHHHHHHTTCCEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCccccccccCCEEEECCCCchHhHhhhhhhccHHHHHHHHHHcCCcEE
Confidence 367999999888999999999999999999988777 889999999998776655555555567889999999999999
Q ss_pred EEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCC-
Q 045794 125 GICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDD- 202 (578)
Q Consensus 125 GIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~- 202 (578)
|||+|||+|+.++.+++.+.++|++++++.++... ..+.+++||+++.++ ++++..++ .+.++++|+++++..+.
T Consensus 84 GIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~-~~~~~~~G~~~v~~~--~~L~~~l~~~~~~~~vHS~~~~~i~~~ 160 (555)
T 1jvn_A 84 GIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDS-EKPVPEIGWNSCIPS--ENLFFGLDPYKRYYFVHSFAAILNSEK 160 (555)
T ss_dssp EEEHHHHTTEEEETTBTTCCCCCSEEEEEEECCTT-TSCSSEEEEECCCCC--TTCCTTCCTTSCEEEEESEECBCCHHH
T ss_pred EEchhhhhhhhhhhcCCCccccCCCCcEEEECCcC-CCCCccccceEEEEc--CHHHhhCCCCceEEEEEEEEEEecccc
Confidence 99999999999887766688999999999875421 235688999988765 78888776 45788999999876432
Q ss_pred -----CCCcEEEEeecC-CceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccCCCC-------C--CCcccccccc
Q 045794 203 -----NKEWVSSTCNYG-DNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNIPK-------K--PTEGKALKLA 267 (578)
Q Consensus 203 -----~~~~~~~~~~~~-d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~~~-------~--~~~~~~~~~~ 267 (578)
......+.+.++ ++++++++.+++||+|||||++...+..+|++|++.....-| . .+..+.+|+.
T Consensus 161 ~~~L~~g~~vlA~s~~~~D~~i~ai~~~~i~GvQFHPE~s~~~g~~l~~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
T 1jvn_A 161 KKNLENDGWKIAKAKYGSEEFIAAVNKNNIFATQFHPEKSGKAGLNVIENFLKQQSPPIPNYSAEEKELLMNDYSNYGLT 240 (555)
T ss_dssp HHHHHHTTCEEEEEEETTEEEEEEEEETTEEEESSBGGGSHHHHHHHHHHHHTTCCCCCCCCCHHHHHHHSCCCGGGGCC
T ss_pred cccCCCCCEEEEEEcCCCCCeEEEEEeCCEEEEEeCcEecChhHHHHHHHHHhcccccCCccccCCcccCCCCCCCccee
Confidence 123455555555 478999999999999999999766678999999987631101 0 1234468999
Q ss_pred eeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHH
Q 045794 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLR 347 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~ 347 (578)
||||||||++++++|+||++||.+|.+|++++....++.+||+++|+.|++.||++||++||++++++..++..++++|+
T Consensus 241 ~~iip~iD~~~g~~g~~V~~kg~~~~vr~~~g~~~~~~~~dp~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~ 320 (555)
T 1jvn_A 241 RRIIACLDVRTNDQGDLVVTKGDQYDVREKSDGKGVRNLGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLK 320 (555)
T ss_dssp CCEEEEEEEEECTTSCEESSTTC---------------CHHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHH
T ss_pred EEEEEEEEEecCCCCcEEEeccceeeEEecccccCceEcCCHHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHH
Confidence 99999999997766887777999988888877555666789999999999999999999999998765555678899999
Q ss_pred HHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhcc-ccCCchHHHHHHHhCCCC
Q 045794 348 LTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTG-VKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 348 ~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 426 (578)
++++++++||++|||||+.+|.+|||||++|++++++++||++|+|||.+++++..+.+.+ .+++|+++++++++||+|
T Consensus 321 ~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 400 (555)
T 1jvn_A 321 QAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQ 400 (555)
T ss_dssp HHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGG
T ss_pred HHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHHcCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999998543343332 457899999999999999
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
+|++|||+|+.++..|.+..++++++...+++|+.|+||+|+++||.+.+++++.+++++++++|+++|++|++++||++
T Consensus 401 ~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t~~~~dG~~ 480 (555)
T 1jvn_A 401 AVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSN 480 (555)
T ss_dssp GEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTC
T ss_pred cEEEEEEccccccccccccccccccccccCCCCCcceeEEEEEecCccCCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCC
Confidence 99999999976544444445667777777888877889999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeecC
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~~ 578 (578)
+|+|+++++++++.+++||||+|||++++|++++++.+||+||++|+++|.+++++++++++|+++||+||+
T Consensus 481 ~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~l~~~gi~~r~ 552 (555)
T 1jvn_A 481 SGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLEHGLKVRM 552 (555)
T ss_dssp SCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHHHHTTCCCCC
T ss_pred CCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHHHHHHHCCCcccc
Confidence 999999999999999999999999999999999996589999999999999999999999999999999984
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=410.27 Aligned_cols=240 Identities=24% Similarity=0.359 Sum_probs=208.5
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
+||||||||+ +|+|| ++||.+++ ...+.+||+++|+.|++.|++|+|++|||++..+ +..|.++|
T Consensus 2 ~~IIP~IDl~---~G~vVrlv~G~~~~--------~~~~~~dP~~~a~~~~~~gad~lhvvDld~a~~~---~~~~~~~i 67 (243)
T 4gj1_A 2 TQIIPALDLI---DGEVVRLVKGDYEQ--------KKVYKYNPLKKFKEYEKAGAKELHLVDLTGAKDP---SKRQFALI 67 (243)
T ss_dssp CEEEEEEEEE---TTEEEEEECSSSCE--------EEECCCCHHHHHHHHHHHTCCEEEEEEHHHHHCG---GGCCHHHH
T ss_pred CEEEEEEEEE---CCeEEEEEccCcCC--------CcEeCCCHHHHHHHHHHCCCCEEEEEecCccccc---chhHHHHH
Confidence 5999999999 99999 99998854 5667799999999999999999999999997543 46789999
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
+++++++++|+|+|||||+.+| ++++|++||+||++||+++++ |+++++++++||+|
T Consensus 68 ~~i~~~~~~pl~vGGGIrs~e~-----------~~~~l~~GadkVii~t~a~~~------------p~li~e~~~~~g~q 124 (243)
T 4gj1_A 68 EKLAKEVSVNLQVGGGIRSKEE-----------VKALLDCGVKRVVIGSMAIKD------------ATLCLEILKEFGSE 124 (243)
T ss_dssp HHHHHHCCSEEEEESSCCCHHH-----------HHHHHHTTCSEEEECTTTTTC------------HHHHHHHHHHHCTT
T ss_pred HHHHHhcCCCeEeccccccHHH-----------HHHHHHcCCCEEEEccccccC------------CchHHHHHhcccCc
Confidence 9999999999999999999976 999999999999999999995 47889999999999
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
+|+++||++... .|+++++||++.+++++.+++++++++|+++|++|++++|||+
T Consensus 125 ~iv~~iD~~~~~-------------------------~~~v~~~gw~~~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt~ 179 (243)
T 4gj1_A 125 AIVLALDTILKE-------------------------DYVVAVNAWQEASDKKLMEVLDFYSNKGLKHILCTDISKDGTM 179 (243)
T ss_dssp TEEEEEEEEESS-------------------------SEEEC--------CCBHHHHHHHHHTTTCCEEEEEETTC----
T ss_pred eEEEEEEEEeCC-------------------------CCEEEecCceecccchHHHHHHHHhhcCCcEEEeeeecccccc
Confidence 999999987531 2689999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 507 KGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 507 ~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
+|+|+++++++++.+ ++|||++||+++++|++++. .+++||++|||||.|.+++++++++|++
T Consensus 180 ~G~d~~l~~~l~~~~~~ipviasGGv~~~~Dl~~l~--~~~~gvivg~Al~~g~i~l~ea~~~l~n 243 (243)
T 4gj1_A 180 QGVNVRLYKLIHEIFPNICIQASGGVASLKDLENLK--GICSGVIVGKALLDGVFSVEEGIRCLAN 243 (243)
T ss_dssp -CCCHHHHHHHHHHCTTSEEEEESCCCSHHHHHHTT--TTCSEEEECHHHHTTSSCHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHhcCCCCEEEEcCCCCHHHHHHHH--ccCchhehHHHHHCCCCCHHHHHHHhhC
Confidence 999999999999876 69999999999999999984 5799999999999999999999999863
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-46 Score=372.78 Aligned_cols=247 Identities=17% Similarity=0.245 Sum_probs=201.6
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccc---cccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTK---ENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPML 343 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~---~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~ 343 (578)
.||||||||+ +|+|| +++|+..+ +++ .+...+.+||+++|+.|++.||+++|++|||+ .|.
T Consensus 1 ~riiP~iDl~---~G~~V~~~~G~~~~---~~~~~~~~~~~~~~dp~~~A~~~~~~Ga~~l~vvDL~~---------~n~ 65 (260)
T 2agk_A 1 TKFIGCIDLH---NGEVKQIVGGTLTS---KKEDVPKTNFVSQHPSSYYAKLYKDRDVQGCHVIKLGP---------NND 65 (260)
T ss_dssp CCEECEEEEE---TTEECC-----------------------CCCHHHHHHHHHHTTCTTCEEEEESS---------SCH
T ss_pred CeEEEEEEEE---CCEEEEcccccccc---ccccccccccccCCCHHHHHHHHHHcCCCEEEEEeCCC---------CCH
Confidence 4899999999 99999 88887632 221 01112568999999999999999999999997 257
Q ss_pred HHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhC
Q 045794 344 QVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY 423 (578)
Q Consensus 344 ~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (578)
++|+++++++++|+|+|||||+. | +++++ +||++|++||+++++. .+.+|+++++++++|
T Consensus 66 ~~i~~i~~~~~~pv~vgGGir~~-~-----------~~~~l-~Ga~~Viigs~a~~~~-------g~~~p~~~~~~~~~~ 125 (260)
T 2agk_A 66 DAAREALQESPQFLQVGGGINDT-N-----------CLEWL-KWASKVIVTSWLFTKE-------GHFQLKRLERLTELC 125 (260)
T ss_dssp HHHHHHHHHSTTTSEEESSCCTT-T-----------HHHHT-TTCSCEEECGGGBCTT-------CCBCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEEeCCCCHH-H-----------HHHHh-cCCCEEEECcHHHhhc-------CCCCHHHHHHHHHHh
Confidence 89999999999999999999986 7 99999 9999999999999851 123368899999999
Q ss_pred CCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHH-HHHHHHHHcCCcEEEEeccCC
Q 045794 424 GNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAY-ELAKAVEDLGAGEILLNCIDC 502 (578)
Q Consensus 424 g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-e~~~~~~~~G~~~ii~tdi~~ 502 (578)
|+++|++++|++... ++ .|+|+++||.+.+++++. +++++++++ +++|++|++++
T Consensus 126 g~~~ivv~iD~k~~~-------------------~~----g~~V~~~gw~~~t~~~~~~e~a~~~~~~-a~~il~t~i~~ 181 (260)
T 2agk_A 126 GKDRIVVDLSCRKTQ-------------------DG----RWIVAMNKWQTLTDLELNADTFRELRKY-TNEFLIHAADV 181 (260)
T ss_dssp CGGGEEEEEEEEEEE-------------------TT----EEEEEETTTTEEEEEEESHHHHHHHTTT-CSEEEEEC---
T ss_pred CcCcEEEEEEeeecC-------------------CC----ceEEEEcCCccccCccHHHHHHHHHHHh-cCEEEEEeecc
Confidence 999999999998410 00 268999999998888889 999999999 99999999999
Q ss_pred CCCCCCCCHHHHHHHHhhC----CCcEEEecCCCCHHHHHHHHHhc-CchHHhhhhhh--ccCC-CCHHHHHHHHHhCC
Q 045794 503 DGQGKGFDMDLIKLISDAV----SIPVIASSGAGAVEHFSDVFRKT-NASAALAAGIF--HRKE-VPIQSVKEHLYKEG 573 (578)
Q Consensus 503 dG~~~G~d~~li~~l~~~~----~ipVIasGGi~s~eDi~~l~~~~-G~~gv~vgsa~--~~~~-~~~~~~~~~l~~~~ 573 (578)
||+++|+|+++++++++.+ ++|||++|||++++|++++++.+ |++||++|+++ |.++ +++.+++++++++|
T Consensus 182 dG~~~G~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~~~~~~~~~~~~ 260 (260)
T 2agk_A 182 EGLCGGIDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFEDCCRWNEKQG 260 (260)
T ss_dssp ----CCCCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBGGGTCSSBCHHHHHHHHHHHC
T ss_pred ccCcCCCCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCHHHHHHHHHhcC
Confidence 9999999999999999999 99999999999999999999744 99999999997 9999 99999999998765
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-38 Score=313.73 Aligned_cols=250 Identities=44% Similarity=0.738 Sum_probs=223.3
Q ss_pred ccceeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHH
Q 045794 265 KLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQ 344 (578)
Q Consensus 265 ~~~~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~ 344 (578)
|+++||||+||++ +|+|| ++.+|+ ..++..||+++|+.|.+.|++.||+.|+++... +...+++
T Consensus 1 m~~~~iip~id~~---~g~~v--~~~~~~--------~~~~~~d~~~~a~~~~~~Gad~i~v~d~~~~~~---~~~~~~~ 64 (253)
T 1thf_D 1 MLAKRIIACLDVK---DGRVV--KGSNFE--------NLRDSGDPVELGKFYSEIGIDELVFLDITASVE---KRKTMLE 64 (253)
T ss_dssp CCCCEEEEEEEEE---TTEEC--CCSCCT--------TSSCTTCHHHHHHHHHHTTCCEEEEEESSCSSS---HHHHHHH
T ss_pred CCCCeEEEEEEEE---CCEEE--Eeeccc--------ceeeccCHHHHHHHHHHcCCCEEEEECCchhhc---CCcccHH
Confidence 6788999999999 89865 665543 334668999999999999999999999997532 3467889
Q ss_pred HHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCC
Q 045794 345 VLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG 424 (578)
Q Consensus 345 ~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (578)
.++++++.+++|++++|||++.++ +++++++|||.|++|+.++.+ |+.+.++.+.+|
T Consensus 65 ~i~~i~~~~~ipvi~~ggI~~~~~-----------~~~~~~~Gad~V~lg~~~l~~------------p~~~~~~~~~~g 121 (253)
T 1thf_D 65 LVEKVAEQIDIPFTVGGGIHDFET-----------ASELILRGADKVSINTAAVEN------------PSLITQIAQTFG 121 (253)
T ss_dssp HHHHHHTTCCSCEEEESSCCSHHH-----------HHHHHHTTCSEEEESHHHHHC------------THHHHHHHHHHC
T ss_pred HHHHHHHhCCCCEEEeCCCCCHHH-----------HHHHHHcCCCEEEEChHHHhC------------hHHHHHHHHHcC
Confidence 999999999999999999999866 999999999999999999985 366789999999
Q ss_pred CCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 425 NQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 425 ~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
.+++++++|++.. +| +|.+.++||.+.+..++.++++++++.|++.|++|+++++|
T Consensus 122 ~~~i~~~~~~~~~--------------------~g----~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g 177 (253)
T 1thf_D 122 SQAVVVAIDAKRV--------------------DG----EFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDG 177 (253)
T ss_dssp GGGEEEEEEEEEE--------------------TT----EEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTT
T ss_pred CCcEEEEEEEEcc--------------------CC----cEEEEECCCccccCCCHHHHHHHHHHCCCCEEEEEeccCCC
Confidence 8899999998631 11 36899999999888889999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeecC
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~~ 578 (578)
+.+|+|+++++++++.+++|||++|||++++|+.++++ +||+||++|++++.+++++.+++++|+++||+||.
T Consensus 178 ~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~-~Gadgv~vGsal~~~~~~~~~~~~~l~~~g~~~~~ 250 (253)
T 1thf_D 178 TKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-AGADAALAASVFHFREIDVRELKEYLKKHGVNVRL 250 (253)
T ss_dssp SCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTTCSCHHHHHHHHHHTTCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCChHHHHHHHHHcCCCCHHHHHHHHHHcCCcccc
Confidence 99999999999999988999999999999999999995 99999999999999999999999999999999984
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=307.84 Aligned_cols=250 Identities=44% Similarity=0.734 Sum_probs=221.8
Q ss_pred ccceeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHH
Q 045794 265 KLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQ 344 (578)
Q Consensus 265 ~~~~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~ 344 (578)
.+++||||+||++ +|+|| ++.+|. ...+..+|+++|+.|.+.|++.|++.|+++.. .....+++
T Consensus 2 ~~~~~iip~id~~---~g~~v--~~~~~~--------~~~~~~d~~~~a~~~~~~Gad~i~v~d~~~~~---~~~~~~~~ 65 (252)
T 1ka9_F 2 SLAKRIVPCLDVH---AGRVV--KGVNFV--------NLRDAGDPVEAARAYDEAGADELVFLDISATH---EERAILLD 65 (252)
T ss_dssp CCCBEEEEEEEEE---TTEET--TCCCSS--------CCSSTTCHHHHHHHHHHHTCSCEEEEECCSST---TCHHHHHH
T ss_pred CCCceEEEEEEEE---CCEEE--Eeeccc--------CceecCCHHHHHHHHHHcCCCEEEEEcCCccc---cCccccHH
Confidence 3568999999999 89865 554433 22356799999999999999999999998742 23467889
Q ss_pred HHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCC
Q 045794 345 VLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG 424 (578)
Q Consensus 345 ~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (578)
.++++++.+++|++++|||++.++ +++++++|||.|++|+..+.+ |+.++++.+.+|
T Consensus 66 ~i~~i~~~~~iPvi~~Ggi~~~~~-----------~~~~~~~Gad~V~lg~~~l~~------------p~~~~~~~~~~~ 122 (252)
T 1ka9_F 66 VVARVAERVFIPLTVGGGVRSLED-----------ARKLLLSGADKVSVNSAAVRR------------PELIRELADHFG 122 (252)
T ss_dssp HHHHHHTTCCSCEEEESSCCSHHH-----------HHHHHHHTCSEEEECHHHHHC------------THHHHHHHHHHC
T ss_pred HHHHHHHhCCCCEEEECCcCCHHH-----------HHHHHHcCCCEEEEChHHHhC------------cHHHHHHHHHcC
Confidence 999999999999999999999866 999999999999999999985 467789999999
Q ss_pred CCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 425 NQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 425 ~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
.+++++++|++.. .| .|.+.++||.+.+..++.++++++++.|++.|++|+++++|
T Consensus 123 ~~~i~~~~~~~~~--------------------~g----~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g 178 (252)
T 1ka9_F 123 AQAVVLAIDARWR--------------------GD----FPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDG 178 (252)
T ss_dssp GGGEEEEEEEEEE--------------------TT----EEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTT
T ss_pred CCcEEEEEEEecC--------------------CC----CEEEEECCCccccCCcHHHHHHHHHHcCCCEEEEecccCCC
Confidence 8889999998641 01 36899999999888889999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeecC
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~~ 578 (578)
+..|+|+++++++++.+++|||++|||++++|+.++++ +||+||++|++++.+++++.+++++|+++||+||+
T Consensus 179 ~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~-~Gadgv~vgsal~~~~~~~~~~~~~l~~~~~~~~~ 251 (252)
T 1ka9_F 179 TKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQ-AGAEAALAASVFHFGEIPIPKLKRYLAEKGVHVRL 251 (252)
T ss_dssp TCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTTSSCHHHHHHHHHHTTCCBCC
T ss_pred CcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH-CCCHHHHHHHHHHcCCCCHHHHHHHHHHCCCCcCC
Confidence 99999999999999999999999999999999999985 99999999999999999999999999999999984
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=303.16 Aligned_cols=234 Identities=21% Similarity=0.299 Sum_probs=210.0
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
|+|||+||++ +|+|| +++||+.+ ...+..+|+++|+.|.+.|++.||+.|+++... ....+++.+
T Consensus 1 m~iip~id~~---~g~~vk~~~G~~~~--------~~~~~~~~~~~a~~~~~~Gad~i~v~d~~~~~~---~~~~~~~~i 66 (241)
T 1qo2_A 1 MLVVPAIDLF---RGKVARMIKGRKEN--------TIFYEKDPVELVEKLIEEGFTLIHVVDLSNAIE---NSGENLPVL 66 (241)
T ss_dssp CEEEEEEEEE---TTEEEEEGGGCGGG--------EEEESSCHHHHHHHHHHTTCCCEEEEEHHHHHH---CCCTTHHHH
T ss_pred CEEEEEEEee---CCEEEEEecccccc--------ceecCcCHHHHHHHHHHcCCCEEEEeccccccc---CCchhHHHH
Confidence 6899999999 99988 78888622 223567999999999999999999999987421 235679999
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
++++ ++++|++++|||++.++ ++++++.|||.|++|+.++.+ |+++.++ +.|| +
T Consensus 67 ~~i~-~~~ipvi~~Ggi~~~~~-----------~~~~~~~Gad~V~lg~~~l~~------------p~~~~~~-~~~g-~ 120 (241)
T 1qo2_A 67 EKLS-EFAEHIQIGGGIRSLDY-----------AEKLRKLGYRRQIVSSKVLED------------PSFLKSL-REID-V 120 (241)
T ss_dssp HHGG-GGGGGEEEESSCCSHHH-----------HHHHHHTTCCEEEECHHHHHC------------TTHHHHH-HTTT-C
T ss_pred HHHH-hcCCcEEEECCCCCHHH-----------HHHHHHCCCCEEEECchHhhC------------hHHHHHH-HHcC-C
Confidence 9999 88999999999999876 999999999999999999985 4778899 9999 8
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
++++++|++.+ .|.++||.+.++.++.++++++++.|++.|++|+++++|+.
T Consensus 121 ~i~~~~d~~~~----------------------------~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~ 172 (241)
T 1qo2_A 121 EPVFSLDTRGG----------------------------RVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTL 172 (241)
T ss_dssp EEEEEEEEETT----------------------------EECCTTCSSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHT
T ss_pred cEEEEEEecCC----------------------------EEEECCceecCCCCHHHHHHHHHhCCCCEEEEEeecccccC
Confidence 99999998753 57789999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc----C-chHHhhhhhhccCCCCHHHHHHHH
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT----N-ASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~----G-~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
.|+|+++++++++.+++|||++|||++++|+.++++.+ | |+||+|||+++.+++++.++++++
T Consensus 173 ~g~~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~~~~~~~~ 240 (241)
T 1qo2_A 173 QEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVMKRYA 240 (241)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCHHHHHHHh
Confidence 99999999999999999999999999999999998633 9 999999999999999999999886
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=300.02 Aligned_cols=234 Identities=18% Similarity=0.322 Sum_probs=196.9
Q ss_pred ceeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHH
Q 045794 267 AKRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQV 345 (578)
Q Consensus 267 ~~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~ 345 (578)
.|+|||+||++ +|+|| +++|++.+ .+..+||+++|+.|.+.|+++||+.|+|+... ++..+ +.
T Consensus 3 ~m~iip~idl~---~g~~V~~~~g~~~~---------~~~~~d~~~~a~~~~~~Gad~i~v~~~d~~~~---~~~~~-~~ 66 (244)
T 1vzw_A 3 KLELLPAVDVR---DGQAVRLVHGESGT---------ETSYGSPLEAALAWQRSGAEWLHLVDLDAAFG---TGDNR-AL 66 (244)
T ss_dssp CCEEEEEEEEE---TTEEBC-----------------CCBCCCHHHHHHHHHHTTCSEEEEEEHHHHHT---SCCCH-HH
T ss_pred ceEEEEEEEEE---CCEEEEeecccccc---------ceecCCHHHHHHHHHHcCCCEEEEecCchhhc---CCChH-HH
Confidence 37999999999 99999 88887632 22335999999999999999999999998542 23556 89
Q ss_pred HHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 346 LRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 346 i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
|+++++.+++|++++|||++.++ ++.++++|||.|++|+.++.+ |+.+.++.+.||
T Consensus 67 i~~i~~~~~ipv~v~ggI~~~~~-----------~~~~l~~Gad~V~lg~~~l~~------------p~~~~~~~~~~g- 122 (244)
T 1vzw_A 67 IAEVAQAMDIKVELSGGIRDDDT-----------LAAALATGCTRVNLGTAALET------------PEWVAKVIAEHG- 122 (244)
T ss_dssp HHHHHHHCSSEEEEESSCCSHHH-----------HHHHHHTTCSEEEECHHHHHC------------HHHHHHHHHHHG-
T ss_pred HHHHHHhcCCcEEEECCcCCHHH-----------HHHHHHcCCCEEEECchHhhC------------HHHHHHHHHHcC-
Confidence 99999999999999999999865 999999999999999999985 366788889998
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
+++++++|++.+ .+.++||.+.+. ++.++++++++.|++.|++|+++++|+
T Consensus 123 ~~~~~~l~~~~g----------------------------~v~~~g~~~~~~-~~~e~~~~~~~~G~~~i~~~~~~~~~~ 173 (244)
T 1vzw_A 123 DKIAVGLDVRGT----------------------------TLRGRGWTRDGG-DLYETLDRLNKEGCARYVVTDIAKDGT 173 (244)
T ss_dssp GGEEEEEEEETT----------------------------EECCSSSCCCCC-BHHHHHHHHHHTTCCCEEEEEC-----
T ss_pred CcEEEEEEccCC----------------------------EEEEcCcccCCC-CHHHHHHHHHhCCCCEEEEeccCcccc
Confidence 789999998753 466899999887 899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc---CchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT---NASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~---G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.+|+|+++++++++.+++|||++|||++++|+.++++ . ||+||++|++++.+++++.+++++++
T Consensus 174 ~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~-~~~~Gadgv~vG~al~~~~~~~~~~~~~~~ 240 (244)
T 1vzw_A 174 LQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAG-LVPAGVEGAIVGKALYAKAFTLEEALEATS 240 (244)
T ss_dssp --CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHT-TGGGTEEEEEECHHHHTTSSCHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHh-hccCCCceeeeeHHHHcCCCCHHHHHHHhc
Confidence 9999999999999999999999999999999999986 6 99999999999999999999998874
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=296.17 Aligned_cols=237 Identities=17% Similarity=0.289 Sum_probs=209.0
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
|+|||||||+ +|+|| +++|++.+ .+..+||+++|+.|.+.|+++||+.|+++...+ +..+ +.|
T Consensus 3 m~iip~id~~---~g~~V~~~~g~~~~---------~~~~~d~~~~a~~~~~~Gad~i~v~~~d~~~~~---~~~~-~~i 66 (244)
T 2y88_A 3 LILLPAVNVV---EGRAVRLVQGKAGS---------QTEYGSAVDAALGWQRDGAEWIHLVDLDAAFGR---GSNH-ELL 66 (244)
T ss_dssp CEEEEEEEEE---TTEEEEEETTEEEE---------EEEEEEHHHHHHHHHHTTCSEEEEEEHHHHTTS---CCCH-HHH
T ss_pred eEEEEEEEeE---CCEEEEeecccccc---------ceecCCHHHHHHHHHHcCCCEEEEEcCcccccC---CChH-HHH
Confidence 7999999999 99999 88887633 222349999999999999999999999986432 2445 899
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
+++++.+++|++++|||++.++ ++.++++|||.|++|+.++.+ |+.+.++.+.+| +
T Consensus 67 ~~i~~~~~ipv~v~ggi~~~~~-----------~~~~l~~Gad~V~lg~~~l~~------------p~~~~~~~~~~g-~ 122 (244)
T 2y88_A 67 AEVVGKLDVQVELSGGIRDDES-----------LAAALATGCARVNVGTAALEN------------PQWCARVIGEHG-D 122 (244)
T ss_dssp HHHHHHCSSEEEEESSCCSHHH-----------HHHHHHTTCSEEEECHHHHHC------------HHHHHHHHHHHG-G
T ss_pred HHHHHhcCCcEEEECCCCCHHH-----------HHHHHHcCCCEEEECchHhhC------------hHHHHHHHHHcC-C
Confidence 9999999999999999999865 999999999999999999985 367788889998 7
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
++++++|++... | .++|.++||.+.++ ++.++++.+++.|++.|++|+++++|++
T Consensus 123 ~~~~~ld~~~~~--------------------~----~~~v~~~g~~~~~~-~~~e~~~~~~~~G~~~i~~~~~~~~~~~ 177 (244)
T 2y88_A 123 QVAVGLDVQIID--------------------G----EHRLRGRGWETDGG-DLWDVLERLDSEGCSRFVVTDITKDGTL 177 (244)
T ss_dssp GEEEEEEEEEET--------------------T----EEEEEEGGGTEEEE-EHHHHHHHHHHTTCCCEEEEETTTTTTT
T ss_pred CEEEEEeccccC--------------------C----CCEEEECCccCCCC-CHHHHHHHHHhCCCCEEEEEecCCcccc
Confidence 899999986210 0 14788999998877 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc---CchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT---NASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~---G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+|+|+++++++++.+++|||++|||.+++|+.++++ . ||++|++|++++.+++.+.+++++++
T Consensus 178 ~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~-~~~~Gad~v~vG~al~~~~~~~~~~~~~~~ 243 (244)
T 2y88_A 178 GGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIAT-LTHRGVEGAIVGKALYARRFTLPQALAAVR 243 (244)
T ss_dssp SCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHT-TGGGTEEEEEECHHHHTTSSCHHHHHHHTT
T ss_pred CCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHh-hccCCCCEEEEcHHHHCCCcCHHHHHHHhh
Confidence 999999999999989999999999999999999986 6 99999999999999999999998874
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=290.93 Aligned_cols=250 Identities=32% Similarity=0.470 Sum_probs=191.5
Q ss_pred eEEEeeeEeecCCC-CEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHH
Q 045794 269 RVIACLDVRANDKG-DLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLR 347 (578)
Q Consensus 269 riIp~iDl~~~~~g-~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~ 347 (578)
+|||+||++++ +| ++|..+|+.. ....+|+++|+.|.+.|++.|++.|+++... ..+.+++.++
T Consensus 3 ~ii~~iD~~~~-~g~~~v~~~~g~~-----------~~~~~~~~~a~~~~~~Ga~~i~v~d~~~~~~---~~g~~~~~i~ 67 (266)
T 2w6r_A 3 RVVVAIDAKRV-DGEFMVFTHSGKK-----------NTGILLRDWVVEVEKRGAGEILLTSIDRDGT---KSGYDTEMIR 67 (266)
T ss_dssp EEEEEEEEEEE-TTEEEEEETTTTE-----------EEEEEHHHHHHHHHHHTCSEEEEEETTTSSC---SSCCCHHHHH
T ss_pred eEEEEEEEEcC-CCCEEEEEcCCee-----------ccCCCHHHHHHHHHHCCCCEEEEEecCcccC---CCcccHHHHH
Confidence 49999999942 36 6776666641 2235899999999999999999999987522 2356799999
Q ss_pred HHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCC--C
Q 045794 348 LTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG--N 425 (578)
Q Consensus 348 ~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 425 (578)
++++.+++|++++|||++.++ ++++++.|||.|++|+..++.. .+|+.++++.+.+| .
T Consensus 68 ~i~~~~~iPvi~~ggi~~~~~-----------i~~~~~~Gad~v~lg~~~~~~~---------~~~~~~~~~~~~~g~~~ 127 (266)
T 2w6r_A 68 FVRPLTTLPIIASGGAGKMEH-----------FLEAFLAGADKALAASVFHFRE---------IDMRELKEYLKKHGGSG 127 (266)
T ss_dssp HHGGGCCSCEEEESCCCSTHH-----------HHHHHHHTCSEEECCCCC---------------CHHHHHHCC----CC
T ss_pred HHHHhcCCCEEEECCCCCHHH-----------HHHHHHcCCcHhhhhHHHHhCC---------CCHHHHHHHHHHcCCCC
Confidence 999999999999999999876 9999999999999999998310 12477888888898 7
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
+++++++|++.. +| .|.+.++||.+.++.++.++++++++.|++.|++|+++++|+
T Consensus 128 ~~i~~~~d~~~~--------------------~g----~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~ 183 (266)
T 2w6r_A 128 QAVVVAIDAKRV--------------------DG----EFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT 183 (266)
T ss_dssp CEEEEEEEEEEE--------------------TT----EEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTT
T ss_pred CEEEEEEEEEec--------------------CC----CEEEEECCCceecchhHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 899999998631 11 367899999988777899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeecC
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~~ 578 (578)
..|+|+++++++++.+++|||++|||++++|+.++++ +||+||+|||+++.+++++.+++++|.++||+||.
T Consensus 184 ~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~-~Gadgv~vgsal~~~~~~~~~~~~~l~~~g~~~~~ 255 (266)
T 2w6r_A 184 KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-AGADAALAASVFHFREIDMRELKEYLKKHGVNVRL 255 (266)
T ss_dssp CSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHH-HTCSEEEESTTTC----------------------
T ss_pred cCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH-cCCHHHHccHHHHcCCCCHHHHHHHHHHCCCcccc
Confidence 9999999999999999999999999999999999985 89999999999999999999999999999999984
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=6.8e-32 Score=269.51 Aligned_cols=249 Identities=45% Similarity=0.750 Sum_probs=218.2
Q ss_pred cceeEEEeeeEeecCCC--CEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhH
Q 045794 266 LAKRVIACLDVRANDKG--DLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPML 343 (578)
Q Consensus 266 ~~~riIp~iDl~~~~~g--~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~ 343 (578)
+.+||||+||++ +| ++ |+|+.+. ...+..+++++|+.+.+.|++.||+.|+++.. .+...+.
T Consensus 3 ~~~~iip~id~~---~g~~~~--v~g~~~~--------~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~~---~~~~~~~ 66 (253)
T 1h5y_A 3 MALRIIPCLDID---GGAKVV--VKGVNFQ--------GIREVGDPVEMAVRYEEEGADEIAILDITAAP---EGRATFI 66 (253)
T ss_dssp CBCEEEEEEEEC---GGGCEE--CTTCCCH--------HHHEEECHHHHHHHHHHTTCSCEEEEECCCCT---TTHHHHH
T ss_pred CccEEEEEEEEc---CCceEE--EEccccc--------ceeecccHHHHHHHHHHcCCCEEEEEeCCccc---cCCcccH
Confidence 568999999999 88 64 4888753 34455699999999999999999999998742 2335678
Q ss_pred HHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhC
Q 045794 344 QVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY 423 (578)
Q Consensus 344 ~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (578)
+.++++++.+++|++++|||++.++ +++++++|||.|.+++..+.+ |+.+.++.+.+
T Consensus 67 ~~i~~i~~~~~ipvi~~g~i~~~~~-----------~~~~~~~Gad~V~i~~~~~~~------------~~~~~~~~~~~ 123 (253)
T 1h5y_A 67 DSVKRVAEAVSIPVLVGGGVRSLED-----------ATTLFRAGADKVSVNTAAVRN------------PQLVALLAREF 123 (253)
T ss_dssp HHHHHHHHHCSSCEEEESSCCSHHH-----------HHHHHHHTCSEEEESHHHHHC------------THHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCCHHH-----------HHHHHHcCCCEEEEChHHhhC------------cHHHHHHHHHc
Confidence 9999999999999999999999866 899999999999999998874 46678888899
Q ss_pred CCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC
Q 045794 424 GNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD 503 (578)
Q Consensus 424 g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d 503 (578)
|.++|.+++|++..+ | .+.+.++||.+.+..++.++++.+.+.|++.|++++++.+
T Consensus 124 g~~~i~~~~~~~~~~--------------------g----~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~ 179 (253)
T 1h5y_A 124 GSQSTVVAIDAKWNG--------------------E----YYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRD 179 (253)
T ss_dssp CGGGEEEEEEEEECS--------------------S----SEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTT
T ss_pred CCCcEEEEEEeecCC--------------------C----cEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccCC
Confidence 988899999986410 0 1478899998776778899999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeecC
Q 045794 504 GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578 (578)
Q Consensus 504 G~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~~ 578 (578)
|+.+|++++.++++++.+++||+++|||.+.+|+.++++ .||++|++||+++.+.+++++++++|++.|++||+
T Consensus 180 g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~-~Ga~~v~vgsal~~~~~~~~~~~~~l~~~g~~~~~ 253 (253)
T 1h5y_A 180 GTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAA-AGADAVLAASLFHFRVLSIAQVKRYLKERGVEVRI 253 (253)
T ss_dssp TTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTTSSCHHHHHHHHHHTTCBCCC
T ss_pred CCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH-cCCcHHHHHHHHHcCCCCHHHHHHHHHHcCCCCCC
Confidence 999999999999999989999999999999999999985 99999999999999999999999999999999984
|
| >4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-32 Score=263.41 Aligned_cols=197 Identities=35% Similarity=0.675 Sum_probs=159.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEec
Q 045794 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICL 128 (578)
Q Consensus 49 ~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGICl 128 (578)
+|+|+|||++|+.++.++|+++|+++++++.++++.++|+||||||+++...+..+...+ +++.+.+.++||||||+
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l~~~D~lilPG~g~~~~~~~~~~~~~---~i~~~~~~~~PvlGICl 80 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVVLAADKLFLPGVGTASEAMKNLTERD---LIELVKRVEKPLLGICL 80 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHHHHCSEEEECCCSCHHHHHHHHHHTT---CHHHHHHCCSCEEEETH
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHHhCCCEEEECCCCCHHHHHHHHHhcC---hHHHHHHcCCCEEEEch
Confidence 499999999999999999999999999999999999999999999988777666665433 35555678999999999
Q ss_pred hHHHHhhhcccC-----CCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCC
Q 045794 129 GLQLLFQSSEEN-----GPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 129 G~QlLa~a~~e~-----~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~ 202 (578)
|||+|+.++.+. ....|++.+++++.++... ....++.++..+.....++++++++ ...++++|++++..
T Consensus 81 G~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~--- 156 (211)
T 4gud_A 81 GMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTG-DLPLPHMGWNTVQVKEGHPLFNGIEPDAYFYFVHSFAMPV--- 156 (211)
T ss_dssp HHHTTSSEECCC----CCCEECCCSSSCEEEECCCT-TSCSSEEEEECCEECTTCGGGTTCCTTCCEEEEESEECCC---
T ss_pred hHhHHHHHhCCcccccCCccccceeccceEEEcccC-CcceeeccceeeeeeccChhhcCCCCCcEEEEEeeEEeCC---
Confidence 999999976533 2346789999999886543 3456788999888888899999887 77889999987642
Q ss_pred CCCcEEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccC
Q 045794 203 NKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTN 253 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~ 253 (578)
.....+...++..++.+++++|+||+|||||+++.++.+||+||++++..
T Consensus 157 -~~~~~a~~~~g~~~~~~v~~~~v~GvQFHPE~s~~~G~~ll~nFl~~~ge 206 (211)
T 4gud_A 157 -GDYTIAQCEYGQPFSAAIQAGNYYGVQFHPERSSKAGARLIQNFLELRGE 206 (211)
T ss_dssp -CTTEEEEEESSSEEEEEEEETTEEEESSCGGGSHHHHHHHHHHHHHC---
T ss_pred -CCeEEEEecCCCeEEEEEeCCCEEEEEccCEecCccHHHHHHHHHHHhcc
Confidence 23456666666667778889999999999999766889999999998653
|
| >1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=236.20 Aligned_cols=194 Identities=39% Similarity=0.721 Sum_probs=149.9
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
++|+|+|++.++..++.++|+++|+++++++.++++.++|+||||||+++...+.++++..+.+.++++++.++||||||
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~~l~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC 82 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGIC 82 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTTSCSSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECT
T ss_pred cEEEEEeCCCccHHHHHHHHHHCCCeEEEecChHHcccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEc
Confidence 46999999989999999999999999999988878899999999998766555555543457889999999999999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcE
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWV 207 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~ 207 (578)
+|||+|+.++.+.|.+.+++++++++.+... .+.+++||+++.++. + +.+++...++++|++++ +... ..+
T Consensus 83 ~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~~---~~~~~~G~~~v~~~~-~--l~~~~~~~~~~~Hs~~~-~~~~--~~v 153 (200)
T 1ka9_H 83 VGMQVLYEGSEEAPGVRGLGLVPGEVRRFRA---GRVPQMGWNALEFGG-A--FAPLTGRHFYFANSYYG-PLTP--YSL 153 (200)
T ss_dssp HHHHTTSSEETTSTTCCCCCSSSSEEEECCS---SSSSEEEEEECEECG-G--GGGGTTCEEEEEESEEC-CCCT--TCC
T ss_pred HHHHHHHHhccccCCcCCccccccEEEECCC---CCCCceeEEEEEech-h--hhcCCCCCEEEeccccc-CCCC--CcE
Confidence 9999999987652337889999999876321 145789999998877 3 55555578899999998 5422 234
Q ss_pred EEEeecCCceEEEEE-eCCEEEEeeCCcccCcchHHHH---HHHhhhc
Q 045794 208 SSTCNYGDNFIASVR-RGNVHAVQFHPEKSGDVGLSVL---RRFLHPK 251 (578)
Q Consensus 208 ~~~~~~~d~~iegi~-~~~i~gvQFHPE~~~~~~~~l~---~~Fl~~~ 251 (578)
+.+..+...++++. .++++|+|||||++...+.+|| ++|++.+
T Consensus 154 -a~s~~~g~~~~~~~~~~~i~gvQfHPE~~~~~g~~l~~~~~~F~~~~ 200 (200)
T 1ka9_H 154 -GKGEYEGTPFTALLAKENLLAPQFHPEKSGKAGLAFLALARRYFEVL 200 (200)
T ss_dssp -EEEEETTEEEEEEEECSSEEEESSCTTSSHHHHHHHHHHHHHHC---
T ss_pred -EEEEeCCeEEEEEEeeCCEEEEecCCCcCccchhHHHHHHHHHHhhC
Confidence 54443111344444 5699999999999877778999 9999764
|
| >1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=233.58 Aligned_cols=193 Identities=32% Similarity=0.597 Sum_probs=151.6
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCC-----CeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLG-----FGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~G-----v~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
++|+|+|++.++..++.++|+++| +++++++.+++ .++||||||||+.+...+.++++..+.++|+++++.++|
T Consensus 1 m~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~~~~-~~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~P 79 (201)
T 1gpw_B 1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRN-DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERY 79 (201)
T ss_dssp CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSCCS-SCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCE
T ss_pred CEEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECCCcc-cCCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHcCCe
Confidence 469999999999999999999999 99999988877 899999999988776666677655678899999999999
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCC
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~ 202 (578)
|||||+|||+|+.++.+.+...+++++++++.+... .+.++.||+++.....+ ....++++|++.+...
T Consensus 80 ilGIC~G~Qll~~~~g~~G~~~~l~~~~g~v~~~~~---~~~~~~g~~~l~~~~~~------~~~~v~~~H~~~v~~~-- 148 (201)
T 1gpw_B 80 VVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRS---RRLPHMGWNEVIFKDTF------PNGYYYFVHTYRAVCE-- 148 (201)
T ss_dssp EEEETHHHHTTSSEETTEEEEECCCSSSEEEEECCC---SSCSEEEEEEEEESSSS------CCEEEEEEESEEEEEC--
T ss_pred EEEEChhHHHHHHhhccCCCCCCcceeeeEEEEcCC---CCCCcccceeeEeccCC------CCCeEEEECcceeccC--
Confidence 999999999999986532346678888888876421 14578898887654332 2467899999998754
Q ss_pred CCCcEEEEeecCCceEEEEE-eCCEEEEeeCCcccCcchHHHHHHHhhhccC
Q 045794 203 NKEWVSSTCNYGDNFIASVR-RGNVHAVQFHPEKSGDVGLSVLRRFLHPKTN 253 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~-~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~ 253 (578)
...+.+.+..+...+++++ .++++|+|||||++...+..||++|++.+++
T Consensus 149 -~~~vla~s~~~g~~~~a~~~~~~i~gvQfHPE~~~~~~~~l~~~f~~~~~~ 199 (201)
T 1gpw_B 149 -EEHVLGTTEYDGEIFPSAVRKGRILGFQFHPEKSSKIGRKLLEKVIECSLS 199 (201)
T ss_dssp -GGGEEEEEEETTEEEEEEEEETTEEEESSCGGGSHHHHHHHHHHHHHHSSC
T ss_pred -CCEEEEEEccCCceEEEEEECCCEEEEECCCcccCHhHHHHHHHHHHHhhc
Confidence 2334455443222578876 4699999999999866788999999998765
|
| >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-25 Score=216.23 Aligned_cols=182 Identities=21% Similarity=0.267 Sum_probs=133.0
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc---CC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE---DI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~---dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
++|+|+|++.++..++.++|+++|+++++++... ++ .++||||||||+...... .... ..+.+.+.++|
T Consensus 25 ~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~~~~~~l~~~~~dglil~Gg~~~~~~~---~~~~---~~~~~~~~~~P 98 (218)
T 2vpi_A 25 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAE---DAPW---FDPAIFTIGKP 98 (218)
T ss_dssp TCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHHHHHHHTCSEEEEEC------------CCC---CCGGGGTSSCC
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChHHHhhcCCCEEEECCCCcccccc---cchh---HHHHHHHcCCC
Confidence 4699999999999999999999999999887643 33 459999999986422111 1011 12234467899
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCC
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSD 201 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~ 201 (578)
+||||+|||+|+.++ | +++.++ ..+++|++++.++++++++++++ ...++++|++.+...+
T Consensus 99 ilGIC~G~Qll~~~~-------G-----G~v~~~------~~~~~G~~~v~~~~~~~l~~~l~~~~~v~~~H~~~v~~l~ 160 (218)
T 2vpi_A 99 VLGICYGMQMMNKVF-------G-----GTVHKK------SVREDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVA 160 (218)
T ss_dssp EEEETHHHHHHHHHT-------T-----CCEEEE------EECSCEEEEEEECTTSGGGTTCCSEEEEEECSEEEESSCC
T ss_pred EEEEcHHHHHHHHHh-------C-----CceEeC------CCCcccEEEEEEccCChhHhcCCCCcEEeehhhhHhhhcC
Confidence 999999999999952 2 555553 22478999999988889998887 5788999999986544
Q ss_pred CCCCcEEEEeecCCceEEEEE--eCCEEEEeeCCcccC-cchHHHHHHHh-hhccCCCCC
Q 045794 202 DNKEWVSSTCNYGDNFIASVR--RGNVHAVQFHPEKSG-DVGLSVLRRFL-HPKTNIPKK 257 (578)
Q Consensus 202 ~~~~~~~~~~~~~d~~iegi~--~~~i~gvQFHPE~~~-~~~~~l~~~Fl-~~~~~~~~~ 257 (578)
.. ..+.+.+ ++.+++++ .++++|+|||||++. ..+..||++|+ +.+++.+.|
T Consensus 161 ~~-~~vlA~s---~~~i~ai~~~~~~i~gvQfHPE~~~~~~g~~l~~~F~~~~~~~~~~w 216 (218)
T 2vpi_A 161 DG-FKVVARS---GNIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTF 216 (218)
T ss_dssp TT-CEEEEEE---TTEEEEEEETTTTEEEESSCTTSTTSTTHHHHHHHHHTTTTCCCCCC
T ss_pred CC-CEEEEEc---CCeEEEEEECCCCEEEEEcCCCCCCChhHHHHHHHHHHHHhCCCCCC
Confidence 31 2223333 45899998 468999999999975 46899999999 888876654
|
| >1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-24 Score=204.77 Aligned_cols=176 Identities=22% Similarity=0.301 Sum_probs=128.7
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc----CCC--CCCEEEECCC-CCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE----DIL--NANRLIFPGV-GAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~----dl~--~~DGlILpGG-g~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
|+|+|+..++..++.++|+++|+++++++..+ ++. ++|||||+|| +++....+ .. -..++++++ +.++|
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~~-~~--~~~~~i~~~-~~~~P 79 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKRED-IG--VSLDVIKYL-GKRTP 79 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHH-HT--THHHHHHHH-TTTSC
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhhh-hh--HHHHHHHHh-cCCCc
Confidence 99999988889999999999999999887653 344 6999999776 43332211 11 124667764 78999
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCC--cccccCC-CeEEEEEeeeeeec
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDS--EILDDVG-DHHVYFVHSYRAMP 199 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~--~l~~~l~-~~~~~~~H~~~v~~ 199 (578)
+||||+|||+|+.++ | +++.+.. ..++.+|+.+..+..+ +++++++ .+.++++|++.+..
T Consensus 80 vLGIC~G~QlL~~~~-------g-----g~v~~~~-----~~~~g~~~~v~~~~~~~~~l~~~~~~~~~v~~~H~~~v~~ 142 (195)
T 1qdl_B 80 ILGVCLGHQAIGYAF-------G-----AKIRRAR-----KVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVDE 142 (195)
T ss_dssp EEEETHHHHHHHHHT-------T-----CEEEEEE-----EEEEEEEEEEEECCSSCCSTTTTCCSEEEEEEEEEEEEEC
T ss_pred EEEEehHHHHHHHHh-------C-----CEEeccC-----CCcCCCceEEEECCCCHhHHHhcCCCceEEeccccchhhh
Confidence 999999999999952 2 5555421 1234457777776666 8888877 67899999999865
Q ss_pred CCCCCCcEEEEeec-CCceEEEEEeC--CEEEEeeCCcccC-cchHHHHHHHhh
Q 045794 200 SDDNKEWVSSTCNY-GDNFIASVRRG--NVHAVQFHPEKSG-DVGLSVLRRFLH 249 (578)
Q Consensus 200 ~~~~~~~~~~~~~~-~d~~iegi~~~--~i~gvQFHPE~~~-~~~~~l~~~Fl~ 249 (578)
.+. . +...... .++.+++++++ +++|+|||||++. ..+..||++|++
T Consensus 143 l~~--~-~~vla~s~~~g~i~a~~~~~~~~~gvQfHPE~~~~~~g~~l~~~f~~ 193 (195)
T 1qdl_B 143 VHR--P-LIVDAISAEDNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFLN 193 (195)
T ss_dssp CCT--T-EEEEEEESSSCCEEEEEESSSSEEEESSBTTSTTCTTHHHHHHHHHH
T ss_pred CCC--C-cEEEEEECCCCcEEEEEeCCCCEEEEecCCCCCCCccHHHHHHHHHh
Confidence 432 2 2233333 44678999964 8999999999976 578899999997
|
| >1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=206.09 Aligned_cols=178 Identities=25% Similarity=0.389 Sum_probs=130.4
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc---CC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE---DI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~---dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
++|+|+|++.++..++.++|+++|+++.+++... ++ .++||||||||.++. . . ..+.++++++.+.++|
T Consensus 1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dglil~Gg~~~~-~---~--~~~~~~i~~~~~~~~P 74 (189)
T 1wl8_A 1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLEEIKAMNPKGIIFSGGPSLE-N---T--GNCEKVLEHYDEFNVP 74 (189)
T ss_dssp CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTCCHHHHHHTCCSEEEECCCSCTT-C---C--TTHHHHHHTGGGTCSC
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCCChHHhcccCCCEEEECCCCChh-h---h--hhHHHHHHHHhhCCCe
Confidence 4699999999999999999999999999887654 34 359999999986221 1 1 1246677777688999
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCC
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSD 201 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~ 201 (578)
+||||+|||+|+.++ | +++.++ ..+++|+..+.++..++++++++ .+.++++|...+...+
T Consensus 75 ilGIC~G~Q~l~~~~-------g-----g~v~~~------~~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~h~~~v~~l~ 136 (189)
T 1wl8_A 75 ILGICLGHQLIAKFF-------G-----GKVGRG------EKAEYSLVEIEIIDEXEIFKGLPKRLKVWESHMDEVKELP 136 (189)
T ss_dssp EEEETHHHHHHHHHH-------T-----CEEEEC------SCCSCEEEEEEESCC--CCTTSCSEEEEEECCSEEEEECC
T ss_pred EEEEcHHHHHHHHHh-------C-----CceecC------CCcccCceeEEEecCchHHhCCCCceEEEEEeeeehhhCC
Confidence 999999999999952 2 566542 23478998888877778887776 5677777776654443
Q ss_pred CCCCcEEEEeecCCceEEEEEeC--CEEEEeeCCcccC-cchHHHHHHHhhhcc
Q 045794 202 DNKEWVSSTCNYGDNFIASVRRG--NVHAVQFHPEKSG-DVGLSVLRRFLHPKT 252 (578)
Q Consensus 202 ~~~~~~~~~~~~~d~~iegi~~~--~i~gvQFHPE~~~-~~~~~l~~~Fl~~~~ 252 (578)
. . +.......++.+++++.+ +++|+|||||+.. ..+..+|++|++.++
T Consensus 137 ~--~-~~vla~s~~g~i~a~~~~~~~~~gvQfHPE~~~~~~g~~l~~~f~~~~~ 187 (189)
T 1wl8_A 137 P--K-FKILARSETCPIEAMKHEELPIYGVQFHPEVAHTEKGEEILRNFAKLCG 187 (189)
T ss_dssp T--T-EEEEEEESSCSCSEEEESSSCEEEESSCTTSTTSTTHHHHHHHHHHHHC
T ss_pred C--C-cEEEEEcCCCCEEEEEeCCceEEEEecCCCcCCCcchHHHHHHHHHHHh
Confidence 2 2 233333345678899853 5999999999865 467899999998764
|
| >2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=210.21 Aligned_cols=183 Identities=18% Similarity=0.268 Sum_probs=136.3
Q ss_pred CCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCC---ccCCCCCCEEEECCC-CCchHHHHHHHhhcHHHHHHHHHhCCC
Q 045794 46 SDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQT---PEDILNANRLIFPGV-GAFAAAMDVLNKTGMAEALCAYIEKDR 121 (578)
Q Consensus 46 ~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~---~~dl~~~DGlILpGG-g~~~~~~~~l~~~~l~~~i~~~~~~g~ 121 (578)
.-++|.++|+++++..++.++|+++|+++++++. ++++.++|||||||| .....+. .....+ .+.+.+.++
T Consensus 12 ~~~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~l~~~DglIl~GG~p~~~~~~--~~~~~l---~~~~~~~~~ 86 (212)
T 2a9v_A 12 HMLKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGAPNIDEEL--DKLGSV---GKYIDDHNY 86 (212)
T ss_dssp CCCBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGGTTCSEEEEEEECSCGGGTG--GGHHHH---HHHHHHCCS
T ss_pred ccceEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCCCHHHHhCCCEEEECCCCCCCCccc--ccchhH---HHHHHhCCC
Confidence 3467999999999999999999999998888875 456778999999998 3322221 011112 233346899
Q ss_pred CEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecC
Q 045794 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPS 200 (578)
Q Consensus 122 PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~ 200 (578)
|+||||+|||+|+.++ | +++.+. ..+++|++.+.++++++++++++ .+.++++|++.+...
T Consensus 87 PiLGIC~G~Qll~~~l-------G-----g~v~~~------~~~~~G~~~v~~~~~~~l~~~~~~~~~v~~~H~~~v~~l 148 (212)
T 2a9v_A 87 PILGICVGAQFIALHF-------G-----ASVVKA------KHPEFGKTKVSVMHSENIFGGLPSEITVWENHNDEIINL 148 (212)
T ss_dssp CEEEETHHHHHHHHHT-------T-----CEEEEE------EEEEEEEEEEEESCCCGGGTTCCSEEEEEEEEEEEEESC
T ss_pred CEEEEChHHHHHHHHh-------C-----CEEEcC------CCcccCceeeEECCCChhHhcCCCceEEEeEhhhhHhhC
Confidence 9999999999999952 2 566542 23678999999988888998877 578899999988654
Q ss_pred CCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccC-cchHHHHHHHhhhccCC
Q 045794 201 DDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSG-DVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 201 ~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~-~~~~~l~~~Fl~~~~~~ 254 (578)
+. .+.......++.+++++. ++++|+|||||++. ..+..||++|++.+++.
T Consensus 149 ~~---~~~vlA~s~d~~i~ai~~~~~~i~gvQfHPE~~~~~~g~~l~~~F~~~~~~~ 202 (212)
T 2a9v_A 149 PD---DFTLAASSATCQVQGFYHKTRPIYATQFHPEVEHTQYGRDIFRNFIGICASY 202 (212)
T ss_dssp CT---TEEEEEECSSCSCSEEEESSSSEEEESSCTTSTTSTTHHHHHHHHHHHHHHH
T ss_pred CC---CcEEEEEeCCCCEEEEEECCCCEEEEEeCCCCCCCccHHHHHHHHHHHHHHh
Confidence 42 233333344567889985 58999999999975 46789999999987643
|
| >3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-24 Score=235.25 Aligned_cols=260 Identities=19% Similarity=0.258 Sum_probs=164.6
Q ss_pred CcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCc---cCCC--CCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCC
Q 045794 47 DSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP---EDIL--NANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDR 121 (578)
Q Consensus 47 ~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~---~dl~--~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~ 121 (578)
..+|+|+|||+++..++.++++++|+.+++++.. +++. ++||||||||+....+.. .....+.+.+.++
T Consensus 10 ~~~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~~~~~~i~~~~~dgIILsGGp~sv~~~~------~~~~~~~~~~~~~ 83 (527)
T 3tqi_A 10 QHRILILDFGSQYAQLIARRVREIGVYCELMPCDIDEETIRDFNPHGIILSGGPETVTLSH------TLRAPAFIFEIGC 83 (527)
T ss_dssp CSEEEEEECSCTTHHHHHHHHHHHTCEEEEEETTCCSSSSTTTCCSEEEECCCCC---------------CCCSTTTSSS
T ss_pred CCeEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHHhcCCCEEEECCcCcccccCC------ChhhHHHHHhcCC
Confidence 3569999999999999999999999998887543 4454 459999999965432211 1122344456799
Q ss_pred CEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCC---------eEEEEE
Q 045794 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGD---------HHVYFV 192 (578)
Q Consensus 122 PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~---------~~~~~~ 192 (578)
||||||+|||+|+.+ .| +++.+ ...+++|++.+.+...+++|++++. ..++++
T Consensus 84 PvLGIC~G~Qlla~~-------lG-----G~V~~------~~~~e~G~~~v~~~~~~~l~~~l~~~~~~~~~~~~~v~~~ 145 (527)
T 3tqi_A 84 PVLGICYGMQTMAYQ-------LG-----GKVNR------TAKAEFGHAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMS 145 (527)
T ss_dssp CEEEETHHHHHHHHH-------SS-----SCBC-----------CEEEEEEEESSCTTTTSSCCSBCCTTSCCEEEEEEE
T ss_pred CEEEEChHHHHHHHH-------cC-----CeEEe------CCCccccceEEEEcCCChhhcCCccccccccccceEEEEE
Confidence 999999999999995 22 56544 2246899999999888889988764 688999
Q ss_pred eeeeeecCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc-chHHHHHHHhh-hccCCCCCCCcccccccce
Q 045794 193 HSYRAMPSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD-VGLSVLRRFLH-PKTNIPKKPTEGKALKLAK 268 (578)
Q Consensus 193 H~~~v~~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~-~~~~l~~~Fl~-~~~~~~~~~~~~~~~~~~~ 268 (578)
|++.+...+.. ....++ ..+..++++++ +++||+|||||.+.. .+..||++|+. .+.+.+.+.+.......-.
T Consensus 146 H~d~v~~lp~g-~~v~A~--s~~~~i~ai~~~~~~~~GvQFHPE~~~t~~G~~ll~nF~~~i~~~~~~w~~~~~~~~~i~ 222 (527)
T 3tqi_A 146 HGDIVSELPPG-FEATAC--TDNSPLAAMADFKRRFFGLQFHPEVTHTPQGHRILAHFVIHICQCIPNWTTKHIIEDSIR 222 (527)
T ss_dssp SSSCBCSCCTT-CEEEEE--ETTEEEEEEECSSSCEEEESBCSSSTTSTTHHHHHHHHHHTTSCCCCCCCSHHHHHHHHH
T ss_pred cccchhccCCC-CEEEEE--eCCCcEEEEEcCCCCEEEEEeccccccccccchhhhhhhhhcccccchhhHHHHHHHHHH
Confidence 99988655542 122222 34577899984 689999999999864 78999999995 4445455543221111101
Q ss_pred eEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHc-CCCeEEEEeccc-CCCCCCCCchhHHH
Q 045794 269 RVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKE-GADEISFLNITG-FRDFPLGDLPMLQV 345 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~-g~~~i~~~Dl~~-~~~~~~~~~~~~~~ 345 (578)
++-- .+. +++++ ++.|.. | +. -+|..+.+. |. .++.+=+|- .. ......+.
T Consensus 223 ~i~~--~v~---~~kvlvalSGGv-D--------------Ss-vla~ll~~~~G~-~v~av~vd~g~~----~~~e~~~~ 276 (527)
T 3tqi_A 223 DIQE--KVG---KEQVIVGLSGGV-D--------------SA-VTATLVHKAIGD-QLVCVLVDTGLL----RLNEVDEV 276 (527)
T ss_dssp HHHH--HHT---TSCEEEECTTTH-H--------------HH-HHHHHHHHHHGG-GEEEEEECCSCS----CTTHHHHH
T ss_pred HHHH--hcC---CCeEEEEEecCc-C--------------HH-HHHHHHHHHhCC-eEEEEEeccCCC----ChhHHHHH
Confidence 1100 012 35544 666654 1 23 333334443 64 466555553 21 11233444
Q ss_pred HHHHhhhccccEEE
Q 045794 346 LRLTSENVFVPLTV 359 (578)
Q Consensus 346 i~~i~~~~~~pi~~ 359 (578)
.+++++..++|+.+
T Consensus 277 ~~~~a~~lgi~~~v 290 (527)
T 3tqi_A 277 LNVFQKHLGAKVIC 290 (527)
T ss_dssp HHHHTTSSCCEEEE
T ss_pred HHHHHHHcCCcEEE
Confidence 45588888888864
|
| >2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-24 Score=203.34 Aligned_cols=187 Identities=24% Similarity=0.354 Sum_probs=132.9
Q ss_pred CcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHH-hhcHHHHHHHHHhCC-CCEE
Q 045794 47 DSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLN-KTGMAEALCAYIEKD-RPFL 124 (578)
Q Consensus 47 ~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~-~~~l~~~i~~~~~~g-~PIl 124 (578)
+|+|+|+.+ .++..++.++|+++|+++++++.++++.++||||||||.. .....+. ...+.+.++++++.+ +|||
T Consensus 2 ~p~Igi~~~-~~~~~~~~~~l~~~G~~~~~~~~~~~l~~~dglil~GG~~--~~~~~~~~~~~~~~~i~~~~~~~~~Pil 78 (191)
T 2ywd_A 2 RGVVGVLAL-QGDFREHKEALKRLGIEAKEVRKKEHLEGLKALIVPGGES--TTIGKLAREYGIEDEVRKRVEEGSLALF 78 (191)
T ss_dssp -CCEEEECS-SSCHHHHHHHHHTTTCCCEEECSGGGGTTCSEEEECSSCH--HHHHHHHHHTTHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEEec-CCchHHHHHHHHHCCCEEEEeCChhhhccCCEEEECCCCh--hhhHHhhhhhhHHHHHHHHHHCCCCeEE
Confidence 467999987 4788999999999999999999888889999999999842 2223332 346788999999999 9999
Q ss_pred EEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCC
Q 045794 125 GICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNK 204 (578)
Q Consensus 125 GIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~ 204 (578)
|||+|||+|+.++...+...++|++++++.+... + .....+.... .+..+..+.++++|++++...+..
T Consensus 79 GiC~G~Q~l~~~~gg~~~~~~lg~~~~~~~~~~~--g---~~~~~~~~~~-----~~~~~~~~~~~~~Hs~~v~~l~~~- 147 (191)
T 2ywd_A 79 GTCAGAIWLAKEIVGYPEQPRLGVLEAWVERNAF--G---RQVESFEEDL-----EVEGLGSFHGVFIRAPVFRRLGEG- 147 (191)
T ss_dssp EETHHHHHHEEEETTCTTCCCCCCEEEEEETTCS--C---CSSSEEEEEE-----EETTTEEEEEEEESCCEEEEECTT-
T ss_pred EECHHHHHHHHHhCCCCCCccccccceEEEcCCc--C---Cccccccccc-----cccCCCceeEEEEcccceeccCCC-
Confidence 9999999999987542345678888888754211 0 0111111010 111122457789999987644321
Q ss_pred CcEEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 205 EWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 205 ~~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
....+.. ++.++++++++++|+|||||++.. . .+|++|++.++
T Consensus 148 ~~~~a~~---~~~~~a~~~~~~~gvQfHPE~~~~-~-~l~~~f~~~~~ 190 (191)
T 2ywd_A 148 VEVLARL---GDLPVLVRQGKVLASSFHPELTED-P-RLHRYFLELAG 190 (191)
T ss_dssp CEEEEEE---TTEEEEEEETTEEEESSCGGGSSC-C-HHHHHHHHHHT
T ss_pred cEEEEEE---CCEEEEEEECCEEEEEeCCCCCCC-c-HHHHHHHHHhc
Confidence 2233333 378999999999999999999764 3 89999998764
|
| >3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=232.53 Aligned_cols=188 Identities=18% Similarity=0.272 Sum_probs=132.0
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCc---cCCC--CCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP---EDIL--NANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~---~dl~--~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
.+|+|+|||+++..++.++|+++|+.+++++.. +++. ++||||||||.....+..... -....++.+.+.++|
T Consensus 8 ~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~--~~~~l~~~a~~~g~P 85 (556)
T 3uow_A 8 DKILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELKDIKDMNIKGVILSGGPYSVTEAGSPH--LKKEVFEYFLEKKIP 85 (556)
T ss_dssp CEEEEEESSCTTHHHHHHHHHHTTCCEEEEETTCCGGGTTTSCEEEEEECCCSCCTTSTTCCC--CCHHHHHHHHHTTCC
T ss_pred CEEEEEECCCccHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCcccccCCcc--hhHHHHHHhhhcCCC
Confidence 569999999999999999999999998888643 3443 789999999864332211100 012344555677999
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCC------------------------
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDS------------------------ 178 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~------------------------ 178 (578)
+||||+|||+|+.++ | +++.+ ....++|+..+.+....
T Consensus 86 vLGIC~G~QlLa~~l-------G-----G~V~~------~~~~E~G~~~l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~ 147 (556)
T 3uow_A 86 IFGICYGMQEIAVQM-------N-----GEVKK------SKTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNY 147 (556)
T ss_dssp EEEETHHHHHHHHHT-------T-----CEEEE------EEEEEEEEEEEEECCTTGGGGCSGGGGC---CCHHHHHTTS
T ss_pred EEEECHHHHHHHHHh-------C-----CcEec------CCCcccCCcceeeccCcccccccceeccccccccccccccc
Confidence 999999999999952 2 44433 11235566555555433
Q ss_pred -------cccccC-C-CeEEEEEeeeeeecCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc-chHHHHHH
Q 045794 179 -------EILDDV-G-DHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD-VGLSVLRR 246 (578)
Q Consensus 179 -------~l~~~l-~-~~~~~~~H~~~v~~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~-~~~~l~~~ 246 (578)
++|.++ + ...++++|++.+...+.. + .......++.++++++ +++||+|||||++.. .+..||++
T Consensus 148 ~~~~~~~~Lf~gl~~~~~~v~~~H~d~V~~lp~g--~-~vlA~s~~~~i~ai~~~~~~i~GvQFHPE~~~~~~G~~ll~n 224 (556)
T 3uow_A 148 KLMNETCCLFENIKSDITTVWMNHNDEVTKIPEN--F-YLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYN 224 (556)
T ss_dssp CCCC--CGGGTTCCSSEEEEEEEEEEEEEECCTT--C-EEEEEETTEEEEEEEETTTTEEEESSCTTSTTSTTHHHHHHH
T ss_pred ccccccchhhcccccCceEEEEEccceeeccCCC--c-EEEEEeCCCCEEEEEECCCCEEEEEcCCCCCccccchHHHHH
Confidence 688887 5 678999999998765542 2 2222334567899985 699999999999865 78999999
Q ss_pred Hhhh-ccCCCCCC
Q 045794 247 FLHP-KTNIPKKP 258 (578)
Q Consensus 247 Fl~~-~~~~~~~~ 258 (578)
|+.. +.+.+.+.
T Consensus 225 Fl~~i~g~~~~~~ 237 (556)
T 3uow_A 225 FAYNICKCKKQFD 237 (556)
T ss_dssp HHTTTTCCCC-CC
T ss_pred HHHHhhccccccc
Confidence 9954 44444443
|
| >2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-23 Score=196.66 Aligned_cols=184 Identities=26% Similarity=0.353 Sum_probs=126.8
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
++|+|+|+. +++.++.++|+++|+++.+++.++++.++||||||||...... ......++.+.++ +.++|+||||
T Consensus 1 m~i~vl~~~-g~~~~~~~~l~~~G~~~~~~~~~~~~~~~dglil~GG~~~~~~-~~~~~~~~~~~i~---~~~~PilGIC 75 (186)
T 2ywj_A 1 MIIGVLAIQ-GDVEEHEEAIKKAGYEAKKVKRVEDLEGIDALIIPGGESTAIG-KLMKKYGLLEKIK---NSNLPILGTC 75 (186)
T ss_dssp CEEEEECSS-SCCHHHHHHHHHTTSEEEEECSGGGGTTCSEEEECCSCHHHHH-HHHHHTTHHHHHH---TCCCCEEEET
T ss_pred CEEEEEecC-cchHHHHHHHHHCCCEEEEECChHHhccCCEEEECCCCchhhh-hhhhccCHHHHHH---hcCCcEEEEC
Confidence 469999984 6777888999999999999998878899999999998532211 1111234555555 6889999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecC-CCCCCc
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPS-DDNKEW 206 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~-~~~~~~ 206 (578)
+|||+|+.++ ++...++|+.++.+.++.. +.. ...+.. +.++..+..++++.+|++.+... +.. ..
T Consensus 76 ~G~Qll~~~~--gg~~~~lg~~~~~~~~~~~--~~~---~~~~~~-----~~~~~~~~~~~~~~~H~~~v~~l~~~~-~~ 142 (186)
T 2ywj_A 76 AGMVLLSKGT--GINQILLELMDITVKRNAY--GRQ---VDSFEK-----EIEFKDLGKVYGVFIRAPVVDKILSDD-VE 142 (186)
T ss_dssp HHHHHHSSCC--SSCCCCCCCSSEEEETTTT--CSS---SCCEEE-----EEEETTTEEEEEEESSCCEEEEECCTT-CE
T ss_pred HHHHHHHHHh--CCCcCccCCCceeEEeccC--CCc---ccceec-----ccccccCCcEEEEEEecceeeecCCCC-eE
Confidence 9999999974 3335567777777654210 000 011111 11222233467788999988654 331 22
Q ss_pred EEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccC
Q 045794 207 VSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTN 253 (578)
Q Consensus 207 ~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~ 253 (578)
..+.+ ++.++++++++++|+|||||++. ++..+|++|++.++.
T Consensus 143 v~a~s---d~~~~a~~~~~~~gvQfHPE~~~-~g~~l~~~F~~~~~~ 185 (186)
T 2ywj_A 143 VIARD---GDKIVGVKQGKYMALSFHPELSE-DGYKVYKYFVENCVK 185 (186)
T ss_dssp EEEEE---TTEEEEEEETTEEEESSCGGGST-THHHHHHHHHHHHTC
T ss_pred EEEEE---CCEEEEEeeCCEEEEECCCCcCC-chhHHHHHHHHHHhh
Confidence 22333 57899999999999999999976 478999999998753
|
| >2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-24 Score=234.14 Aligned_cols=256 Identities=23% Similarity=0.249 Sum_probs=168.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCeEEEeCCc---cCCC--CCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEE
Q 045794 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP---EDIL--NANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFL 124 (578)
Q Consensus 50 I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~---~dl~--~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIl 124 (578)
|+|+|||+++..++.++++++|+.+++++.. +++. ++||||||||+....+.... . ..+.+.+.++|||
T Consensus 2 i~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~~~~~~i~~~~~dgiIlsGGp~s~~~~~~~---~---~~~~~~~~~~PvL 75 (503)
T 2ywb_A 2 VLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAP---R---PDPRLFSSGLPLL 75 (503)
T ss_dssp EEEEESSCTTHHHHHHHHHTTTCCEEEEETTCCHHHHHTTCCSEEEECCCSSCSSCTTCC---C---CCGGGGCSSCCEE
T ss_pred EEEEECCCcHHHHHHHHHHHCCCEEEEEECCCCHHHHHhcCCCEEEECCCCchhccCCCc---c---hHHHHHhCCCCEE
Confidence 8999999999999999999999988887543 3343 45999999986432211100 1 1133446789999
Q ss_pred EEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCC
Q 045794 125 GICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDN 203 (578)
Q Consensus 125 GIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~ 203 (578)
|||+|||+|+.+ .| +++.+. ..+++|++.+.+.. ++++++++ ...++++|++.+...+..
T Consensus 76 GIC~G~Qlla~~-------~G-----G~v~~~------~~~e~G~~~v~~~~-~~l~~~~~~~~~v~~~H~~~v~~lp~g 136 (503)
T 2ywb_A 76 GICYGMQLLAQE-------LG-----GRVERA------GRAEYGKALLTRHE-GPLFRGLEGEVQVWMSHQDAVTAPPPG 136 (503)
T ss_dssp EETHHHHHHHHT-------TT-----CEEECC---------CEEEEECSEEC-SGGGTTCCSCCEEEEECSCEEEECCTT
T ss_pred EECHHHHHHHHH-------hC-----CeEeeC------CCCccceEEEEecC-cHHhhcCCCccEEEEECCCccccCCCC
Confidence 999999999994 22 666542 24678999888776 88998887 678999999998765432
Q ss_pred CCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc-chHHHHHHHhhhccCCCCCCCcccccccceeEEEeeeEeecC
Q 045794 204 KEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD-VGLSVLRRFLHPKTNIPKKPTEGKALKLAKRVIACLDVRAND 280 (578)
Q Consensus 204 ~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~-~~~~l~~~Fl~~~~~~~~~~~~~~~~~~~~riIp~iDl~~~~ 280 (578)
+.......++.++++++ +++||+|||||.+.+ .+..||++|++.+.+.+.+.+..-....-.++.-. +.
T Consensus 137 ---~~v~A~s~~~~i~ai~~~~~~~~gvQFHPE~~~~~~g~~ll~~F~~~~~~~~~~~~~~~~~~~i~~ir~~--~~--- 208 (503)
T 2ywb_A 137 ---WRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLELAGVKRDWTPEHVLEELLREVRER--AG--- 208 (503)
T ss_dssp ---CEEEEECSSCSCSEEECTTSSEEEESBCTTSTTSTTHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHH--HT---
T ss_pred ---CEEEEEECCCCEEEEEeCCCCEEEEecCCCcccccccHHHHHHHHHHhhhhccccchhhhHHHHHhhhhh--cc---
Confidence 22333334567889985 599999999999764 78999999998888777664321111000000000 12
Q ss_pred CCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEE
Q 045794 281 KGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTV 359 (578)
Q Consensus 281 ~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~ 359 (578)
+++++ ++.|.. |-.-+|..+.+.| .+++.+=+|-- ..+....+.+++++++.++|+.+
T Consensus 209 ~~kvvvalSGGv----------------DSsvla~ll~~~g-~~v~av~vd~g----~~~~~e~~~v~~~~~~lgi~~~v 267 (503)
T 2ywb_A 209 KDRVLLAVSGGV----------------DSSTLALLLAKAG-VDHLAVFVDHG----LLRLGEREEVEGALRALGVNLLV 267 (503)
T ss_dssp TSEEEEEECSSH----------------HHHHHHHHHHHHT-CEEEEEEEECS----CSCTTHHHHHHHHHHHTTCCEEE
T ss_pred CccEEEEecCCc----------------chHHHHHHHHHcC-CeEEEEEEeCC----CCChHHHHHHHHHHHHhCCCEEE
Confidence 34544 666643 2223444444557 45666655531 11134577788888888888764
|
| >2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=204.25 Aligned_cols=188 Identities=26% Similarity=0.366 Sum_probs=132.4
Q ss_pred CCCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEE
Q 045794 45 SSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFL 124 (578)
Q Consensus 45 ~~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIl 124 (578)
..+++|+|+|+ .+++.++.++|+++|+++.+++..+++.++|+||||||.....+ .......+.+.|+++++.++|+|
T Consensus 18 ~~~~~I~ii~~-~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~d~iil~GG~~~~~~-~~~~~~~~~~~i~~~~~~g~Pil 95 (208)
T 2iss_D 18 GSHMKIGVLGV-QGDVREHVEALHKLGVETLIVKLPEQLDMVDGLILPGGESTTMI-RILKEMDMDEKLVERINNGLPVF 95 (208)
T ss_dssp --CCEEEEECS-SSCHHHHHHHHHHTTCEEEEECSGGGGGGCSEEEECSSCHHHHH-HHHHHTTCHHHHHHHHHTTCCEE
T ss_pred CCCcEEEEEEC-CCchHHHHHHHHHCCCEEEEeCChHHHhhCCEEEECCCcHHHHH-hhhhhhhHHHHHHHHHHCCCeEE
Confidence 45678999998 68999999999999999999998888999999999997421111 22223356788999999999999
Q ss_pred EEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC--CeEEEEEeeeeeecCCC
Q 045794 125 GICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG--DHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 125 GIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~--~~~~~~~H~~~v~~~~~ 202 (578)
|||+|||+|+.++... ...++|++++++.+.. .|+....+..+ ..+.+++ +++++.+|++.+...+.
T Consensus 96 GIC~G~QlL~~~~gg~-~~~~lg~~~~~v~~~~---------~g~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~ 164 (208)
T 2iss_D 96 ATCAGVILLAKRIKNY-SQEKLGVLDITVERNA---------YGRQVESFETF-VEIPAVGKDPFRAIFIRAPRIVETGK 164 (208)
T ss_dssp EETHHHHHHEEEEC----CCCCCCEEEEEETTT---------TCSGGGCEEEE-ECCGGGCSSCEEEEESSCCEEEEECS
T ss_pred EECHHHHHHHHHcCCC-CCCCccccceEEEecC---------CCcccccccCC-cccccCCCCceEEEEEeCcccccCCC
Confidence 9999999999986532 3678899988876521 11110000011 1223343 57888888877654332
Q ss_pred CCCcEEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhc
Q 045794 203 NKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPK 251 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~ 251 (578)
. ..+.+.. ++.+++++.++++|+|||||++... .++++|++.+
T Consensus 165 ~-~~v~a~~---d~~~~a~~~~~i~GvQfHPE~~~~~--~l~~~fl~~~ 207 (208)
T 2iss_D 165 N-VEILATY---DYDPVLVKEGNILACTFHPELTDDL--RLHRYFLEMV 207 (208)
T ss_dssp S-CEEEEEE---TTEEEEEEETTEEEESSCGGGSSCC--HHHHHHHTTC
T ss_pred C-cEEEEEE---CCEEEEEEECCEEEEEeCCCcCCcH--HHHHHHHHHh
Confidence 1 1222332 4788999989999999999997643 8999999875
|
| >3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=203.83 Aligned_cols=188 Identities=22% Similarity=0.335 Sum_probs=137.3
Q ss_pred cEEEEEECCCCCH-HHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHH---HHHHhhcHHHHHHHHHhCCCCE
Q 045794 48 SVVTLLDYGAGNV-RSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAM---DVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 48 ~~I~vld~~~g~~-~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~---~~l~~~~l~~~i~~~~~~g~PI 123 (578)
++|+|++++..+. .++.++|+++|+++.+++..+++.++|+||||||++..... .+.....+.++++++.+.++||
T Consensus 3 ~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pi 82 (213)
T 3d54_D 3 PRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDDKLDDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLI 82 (213)
T ss_dssp CEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTCCCSSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCEE
T ss_pred cEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCCCcccCCEEEECCCCchhhhhccccccccHHHHHHHHHHHHCCCEE
Confidence 5699999986663 78899999999999999877778899999999986533221 0122235778899999899999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEc-cCCcccccCCC-eEEEE--Ee---eee
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQIT-KDSEILDDVGD-HHVYF--VH---SYR 196 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~-~~~~l~~~l~~-~~~~~--~H---~~~ 196 (578)
+|||+|+|+|+.+ |++++++.+... ...+.||+++.++ .++++++.++. ...+. +| +++
T Consensus 83 lgIC~G~qlLa~a----------Gll~g~v~~~~~----~~~~~g~~~v~~~~~~~~l~~~~~~~~~~~~~~~H~~~s~~ 148 (213)
T 3d54_D 83 MGICNGFQILIEM----------GLLKGALLQNSS----GKFICKWVDLIVENNDTPFTNAFEKGEKIRIPIAHGFGRYV 148 (213)
T ss_dssp EECHHHHHHHHHH----------TSSCSEEECCSS----SSCBCCEEEEEECCCSSTTSTTSCTTCEEEEECCBSSCEEE
T ss_pred EEECHHHHHHHHc----------CCCCCCeecCCC----CceEeeeEEEEeCCCCCceeeccCCCCEEEEEeecCceEEE
Confidence 9999999999993 566678765321 1137899999987 67788887762 33343 78 666
Q ss_pred eecCCCCCCcEEEEeecCC---ceEEEEEe--CCEEEEeeCCcccC------cchHHHHHHHhhhcc
Q 045794 197 AMPSDDNKEWVSSTCNYGD---NFIASVRR--GNVHAVQFHPEKSG------DVGLSVLRRFLHPKT 252 (578)
Q Consensus 197 v~~~~~~~~~~~~~~~~~d---~~iegi~~--~~i~gvQFHPE~~~------~~~~~l~~~Fl~~~~ 252 (578)
+.+ ....+.+.+.+.+ ..+++++. ++++|+|||||++. .++..||++|++.++
T Consensus 149 ~~~---~~~~~~a~~~~~ng~~~~i~a~~~~~~~~~gvQfHPE~~~~~~~~~~~g~~l~~~f~~~~~ 212 (213)
T 3d54_D 149 KID---DVNVVLRYVKDVNGSDERIAGVLNESGNVFGLMPHPERAVEELIGGEDGKKVFQSILNYLK 212 (213)
T ss_dssp CSS---CCEEEEEESSCSSCCGGGEEEEECSSSCEEEECSCSTTTTSTTTTCSTTSHHHHHHHHHCC
T ss_pred ecC---CCcEEEEEcCCCCCCccceeEEEcCCCCEEEEeCCHHHhcCHhhhcCccHHHHHHHHHHhh
Confidence 532 1222333333222 36888874 58999999999976 467899999999874
|
| >1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-23 Score=199.35 Aligned_cols=176 Identities=20% Similarity=0.267 Sum_probs=118.5
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc---CC----C--CCCEEEECCC-CCchHHHHHHHhhcHHHHHHHHH
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE---DI----L--NANRLIFPGV-GAFAAAMDVLNKTGMAEALCAYI 117 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~---dl----~--~~DGlILpGG-g~~~~~~~~l~~~~l~~~i~~~~ 117 (578)
++|+|+|+..++.+++.++|+++|+++++++... ++ . +.|++||+|| +++. + .++...+.+++
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~-~------~~~~~~l~~~~ 73 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPS-E------AGCMPELLTRL 73 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGG-G------STTHHHHHHHH
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcCch-h------CchHHHHHHHH
Confidence 4699999888899999999999999999887652 22 1 3445776665 4432 2 12223333456
Q ss_pred hCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeee
Q 045794 118 EKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYR 196 (578)
Q Consensus 118 ~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~ 196 (578)
+.++|+||||+|||+|+.++ | +++.+. ..+..|+........++++.+++ ...++++|++.
T Consensus 74 ~~~~PilGIC~G~Qll~~~~-------G-----g~v~~~------~~~~~g~~~~~~~~~~~l~~~~~~~~~v~~~H~~~ 135 (192)
T 1i1q_B 74 RGKLPIIGICLGHQAIVEAY-------G-----GYVGQA------GEILHGKATSIEHDGQAMFAGLANPLPVARYHSLV 135 (192)
T ss_dssp BTTBCEEEETHHHHHHHHHT-------S-----CCCCC---------CCSSEEEEEEECCCGGGTTSCSSEEEEECCC--
T ss_pred hcCCCEEEECcChHHHHHHh-------C-----CEEEeC------CCcEecceeEEecCCChHHhcCCCCcEEEechhhH
Confidence 78999999999999999963 2 232211 11234544333334567888776 78999999998
Q ss_pred eecCCCCCCcEEEEeecCCceEEEEE--eCCEEEEeeCCccc-CcchHHHHHHHhhhcc
Q 045794 197 AMPSDDNKEWVSSTCNYGDNFIASVR--RGNVHAVQFHPEKS-GDVGLSVLRRFLHPKT 252 (578)
Q Consensus 197 v~~~~~~~~~~~~~~~~~d~~iegi~--~~~i~gvQFHPE~~-~~~~~~l~~~Fl~~~~ 252 (578)
+...+.. ..+.+ .. ++++++++ .+++||+|||||++ ...+..++++|++.+.
T Consensus 136 v~~lp~~-~~v~a--~~-~~~~~ai~~~~~~~~gvQfHPE~~~~~~g~~il~nf~~~~~ 190 (192)
T 1i1q_B 136 GSNVPAG-LTINA--HF-NGMVMAVRHDADRVCGFQFHPESILTTQGARLLEQTLAWAQ 190 (192)
T ss_dssp -CCCCTT-CEEEE--EE-TTEEEEEEETTTTEEEESSBTTSTTCTTHHHHHHHHHHHHT
T ss_pred hhhCCCc-cEEEE--CC-CCcEEEEEECCCCEEEEEccCcccCCcccHHHHHHHHHHHh
Confidence 7654432 12222 22 47889998 56999999999997 4578999999998764
|
| >2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-23 Score=198.22 Aligned_cols=187 Identities=23% Similarity=0.344 Sum_probs=130.1
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
++|+|+|+ .+++.++.++|+++|+++.+++..+++.++|+||||||.....+ .......+.+.++++++.++|+||||
T Consensus 2 m~I~il~~-~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~d~iil~GG~~~~~~-~~~~~~~~~~~i~~~~~~~~pilgIC 79 (196)
T 2nv0_A 2 LTIGVLGL-QGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMR-RLIDTYQFMEPLREFAAQGKPMFGTC 79 (196)
T ss_dssp CEEEEECS-SSCCHHHHHHHHHTTCEEEEECSGGGGGGCSEEEECCSCHHHHH-HHHHHTTCHHHHHHHHHTTCCEEEET
T ss_pred cEEEEEEc-cCCcHHHHHHHHHCCCEEEEeCChHHHhhCCEEEECCCChhhHH-HHhhhHHHHHHHHHHHHCCCcEEEEC
Confidence 46999998 45666667999999999999998888889999999998632221 12222356788999999999999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCc
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEW 206 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~ 206 (578)
+|||+|+.++... ...++|++++++.+... +... +. + .. +..+.+++ +++.+.+|++.+...+.. ..
T Consensus 80 ~G~q~l~~~~gg~-~~~~lg~~~~~~~~~~~--g~~~---~~--~--~~-~~~~~~~g~~~~~~~~h~~~v~~~~~~-~~ 147 (196)
T 2nv0_A 80 AGLIILAKEIAGS-DNPHLGLLNVVVERNSF--GRQV---DS--F--EA-DLTIKGLDEPFTGVFIRAPHILEAGEN-VE 147 (196)
T ss_dssp HHHHHHSBCCC-----CCCCCSCEEEECCCS--CTTT---SE--E--EE-EECCTTCSSCEEEEEESCCEEEEECTT-CE
T ss_pred HHHHHHHHHhcCC-CCCcccCCceeEeccCC--Cccc---cc--c--cC-CcccccCCCceEEEEEecceecccCCC-cE
Confidence 9999999976432 24678888888764210 0111 10 0 01 11223333 678888998876544332 22
Q ss_pred EEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccC
Q 045794 207 VSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTN 253 (578)
Q Consensus 207 ~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~ 253 (578)
..+.. ++.++++++++++|+|||||++.. ..++++|++.++.
T Consensus 148 v~a~~---d~~~~a~~~~~~~gvQfHPE~~~~--~~l~~~fl~~~~~ 189 (196)
T 2nv0_A 148 VLSEH---NGRIVAAKQGQFLGCSFHPELTED--HRVTQLFVEMVEE 189 (196)
T ss_dssp EEEEE---TTEEEEEEETTEEEESSCTTSSSC--CHHHHHHHHHHHH
T ss_pred EEEEE---CCEEEEEEECCEEEEEECCccCCc--hHHHHHHHHHHHh
Confidence 22332 467899999999999999999764 3799999998764
|
| >3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-23 Score=205.91 Aligned_cols=187 Identities=16% Similarity=0.156 Sum_probs=129.0
Q ss_pred HHHHHHHHHCCCeEEEeCCccC------CCCCCEEEECCCCCchHHH------------HHHHhhcHHHHHHHHHhCCCC
Q 045794 61 RSVRNAIRHLGFGIKDVQTPED------ILNANRLIFPGVGAFAAAM------------DVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 61 ~~i~~~L~~~Gv~v~~v~~~~d------l~~~DGlILpGGg~~~~~~------------~~l~~~~l~~~i~~~~~~g~P 122 (578)
.+++++++++|+.+++++...+ +..+||||||||.+..+.. +..++....++++++++.++|
T Consensus 31 ~~~~~~l~~aG~~pv~lp~~~~~~~~~~l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~P 110 (254)
T 3fij_A 31 QRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKP 110 (254)
T ss_dssp HHHHHHHHHHTCEEEEECCCCGGGHHHHHHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCEEEEEeCCCchHHHHHHhhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCC
Confidence 4688999999999988876533 5689999999996422211 011112356789999999999
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCce-eeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecC
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGV-VGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPS 200 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~-v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~ 200 (578)
|||||+|||+|+.++. +.-..+++..++. +.+. ....+++||+.+.+++++.+++.++ .+.+..+|++.+...
T Consensus 111 iLGIC~G~Qll~~a~G-g~v~~~~~~~~~~~~~h~----~~~~~~~g~~~v~~~~~s~l~~~~~~~~~v~~~H~~~v~~l 185 (254)
T 3fij_A 111 IFAICRGMQLVNVALG-GTLYQDISQVETKALQHL----QRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKL 185 (254)
T ss_dssp EEEETHHHHHHHHHTT-CCEESSGGGSSSCCCCCB----CCSCTTSCCEEEEECTTSSGGGTCCTTEEECCBCSCEESSC
T ss_pred EEEECHHHHHHHHHhC-CceecccccccCcccccc----CCCCCccceEEEEeCCCChHHHhcCCcEEEEEeccchhhcc
Confidence 9999999999999631 1112222222221 1111 1234678999999998888988776 455666666655433
Q ss_pred CCCCCcEEEEeecCCceEEEEEeC----CEEEEeeCCcccCc---chHHHHHHHhhhccCCC
Q 045794 201 DDNKEWVSSTCNYGDNFIASVRRG----NVHAVQFHPEKSGD---VGLSVLRRFLHPKTNIP 255 (578)
Q Consensus 201 ~~~~~~~~~~~~~~d~~iegi~~~----~i~gvQFHPE~~~~---~~~~l~~~Fl~~~~~~~ 255 (578)
+ ..+.......++.+|+++.+ +++|+|||||++.. .+..||++|++.+++..
T Consensus 186 ~---~g~~v~a~s~dg~ieai~~~~~~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv~~~~~~~ 244 (254)
T 3fij_A 186 A---PSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKTM 244 (254)
T ss_dssp C---SSEEEEEEETTCCEEEEEESSCSSCEEEESSCGGGTGGGCHHHHHHHHHHHHHHHSCC
T ss_pred C---CCcEEEEEeCCCcEEEEEecCCCCeEEEEEcCCccCCCCCchHHHHHHHHHHHHHHHH
Confidence 2 33444444456789999966 69999999999763 56899999999988763
|
| >1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-23 Score=229.91 Aligned_cols=185 Identities=20% Similarity=0.309 Sum_probs=135.4
Q ss_pred CcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCc---cCCC--CCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCC
Q 045794 47 DSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP---EDIL--NANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDR 121 (578)
Q Consensus 47 ~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~---~dl~--~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~ 121 (578)
.++|+|+|||+++..++.++++++|+.+++++.. +++. ++||||||||+....+.... .+ .+.+.+.++
T Consensus 7 ~~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~~~~~~i~~~~~dgiILsGGp~s~~~~~~~---~~---~~~~~~~g~ 80 (525)
T 1gpm_A 7 KHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENSP---RA---PQYVFEAGV 80 (525)
T ss_dssp SSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESCCCHHHHHHHCCSEEEECCCSSCTTSTTCC---CC---CGGGGTSSS
T ss_pred CCEEEEEECCCccHHHHHHHHHHCCCEEEEEECCCCHHHHhccCCCEEEECCcCccccccCCc---ch---HHHHHHCCC
Confidence 3679999999999999999999999998888643 3343 46999999986433221100 11 233446799
Q ss_pred CEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCC---------eEEEEE
Q 045794 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGD---------HHVYFV 192 (578)
Q Consensus 122 PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~---------~~~~~~ 192 (578)
||||||+|||+|+.++ | +++.+. ..+++|++.+.+...++++++++. ..++++
T Consensus 81 PvLGIC~G~Qlla~~~-------G-----G~V~~~------~~~e~G~~~v~~~~~~~L~~~l~~~~~~~~~~~~~v~~~ 142 (525)
T 1gpm_A 81 PVFGVCYGMQTMAMQL-------G-----GHVEAS------NEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMS 142 (525)
T ss_dssp CEEEETHHHHHHHHHH-------T-----CEEECC------SSCEEEEEEEEECSCCTTTTTCCSEECTTSCEEEEEEEE
T ss_pred CEEEEChHHHHHHHHc-------C-----CEEEeC------CCcccceEEEEeCCCCHhhccCccccccccccceEEEEE
Confidence 9999999999999952 2 666552 346899999998877889988764 678999
Q ss_pred eeeeeecCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc-chHHHHHHHh-hhccCCCCCC
Q 045794 193 HSYRAMPSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD-VGLSVLRRFL-HPKTNIPKKP 258 (578)
Q Consensus 193 H~~~v~~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~-~~~~l~~~Fl-~~~~~~~~~~ 258 (578)
|++.+...+.. + .......++.++++++ +++||+|||||.+.. .+..||++|+ +.+.+.+.+.
T Consensus 143 H~~~V~~lp~g--~-~v~A~s~~~~i~ai~~~~~~i~gvQFHPE~~~~~~g~~ll~nF~~~i~~~~~~~~ 209 (525)
T 1gpm_A 143 HGDKVTAIPSD--F-ITVASTESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWT 209 (525)
T ss_dssp ECSEEEECCTT--C-EEEEECSSCSCSEEEETTTTEEEESBCTTSTTSTTHHHHHHHHHHTTSCCCCCCC
T ss_pred ccceeeeCCCC--C-EEEEECCCCCEEEEEECCCCEEEEecCCCCCcchhHHHHHHHHHHhhhhccccch
Confidence 99998765432 2 2223334566788885 599999999999764 7899999999 4555555543
|
| >1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.3e-23 Score=201.02 Aligned_cols=189 Identities=24% Similarity=0.329 Sum_probs=129.9
Q ss_pred CCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEE
Q 045794 46 SDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLG 125 (578)
Q Consensus 46 ~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlG 125 (578)
.+++|+|+|+. +++.++.++|+++|+++.+++..+++.++|+||||||.....+ .......+.++|+++++.++||||
T Consensus 22 ~~~~I~il~~~-~~~~~~~~~l~~~G~~~~~~~~~~~l~~~Dglil~GG~~~~~~-~~~~~~~~~~~i~~~~~~~~PilG 99 (219)
T 1q7r_A 22 SNMKIGVLGLQ-GAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTMR-RLIDRYGLMEPLKQFAAAGKPMFG 99 (219)
T ss_dssp CCCEEEEESCG-GGCHHHHHHHHHTTCEEEEECSGGGGTTCSEEEECCCCHHHHH-HHHHHTTCHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEEeCC-CCcHHHHHHHHHCCCEEEEECCHHHHhhCCEEEECCCChHHHH-HHhhhhHHHHHHHHHHHcCCeEEE
Confidence 35789999984 4455667999999999999998888999999999998632221 122233567889999999999999
Q ss_pred EechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCC
Q 045794 126 ICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNK 204 (578)
Q Consensus 126 IClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~ 204 (578)
||+|||+|+.++... ...++|++++++.+... ....+.+... ..+.+++ +++.+++|++.+...+..
T Consensus 100 IC~G~QlL~~~~gg~-~~~~lg~~~~~~~~~~~-----g~~~~~~~~~-----~~~~g~g~~~~~~~~h~~~v~~l~~~- 167 (219)
T 1q7r_A 100 TCAGLILLAKRIVGY-DEPHLGLMDITVERNSF-----GRQRESFEAE-----LSIKGVGDGFVGVFIRAPHIVEAGDG- 167 (219)
T ss_dssp ETTHHHHHEEEEESS-CCCCCCCEEEEEECHHH-----HCCCCCEEEE-----EEETTTEEEEEEEESSCCEEEEECTT-
T ss_pred ECHHHHHHHHHhCCC-CcCCcCccceEEEecCC-----CccccceecC-----cccCCCCCceEEEEEecceeeccCCC-
Confidence 999999999976432 24678887777654110 0001111100 1112232 456777888776544321
Q ss_pred CcEEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccC
Q 045794 205 EWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTN 253 (578)
Q Consensus 205 ~~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~ 253 (578)
....+.. ++.+++++.++++|+|||||++.. ..+|++|++.++.
T Consensus 168 ~~v~a~s---dg~~ea~~~~~i~GvQfHPE~~~~--~~l~~~fl~~~~~ 211 (219)
T 1q7r_A 168 VDVLATY---NDRIVAARQGQFLGCSFHPELTDD--HRLMQYFLNMVKE 211 (219)
T ss_dssp CEEEEEE---TTEEEEEEETTEEEESSCGGGSSC--CHHHHHHHHHHHH
T ss_pred cEEEEEc---CCEEEEEEECCEEEEEECcccCCC--HHHHHHHHHHHHH
Confidence 1222332 478899999999999999999754 4799999988753
|
| >3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=200.50 Aligned_cols=181 Identities=16% Similarity=0.130 Sum_probs=130.7
Q ss_pred cEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCC------ccCCCCCCEEEECCCCCch----HHHHHHHhhcHHHHHHHH
Q 045794 48 SVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQT------PEDILNANRLIFPGVGAFA----AAMDVLNKTGMAEALCAY 116 (578)
Q Consensus 48 ~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~------~~dl~~~DGlILpGGg~~~----~~~~~l~~~~l~~~i~~~ 116 (578)
++|+++... ......+.++++++|+++.+++. ++++.++|+|||+||.... .+..|+....+.++|+++
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKA 80 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCSCGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCCCccccCEEEECCCCCCcccccccCcccchHHHHHHHHHH
Confidence 357777654 45778899999999999988754 3347789999999986431 222344322367889999
Q ss_pred HhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEcc---CCcccccCC-CeEEEEE
Q 045794 117 IEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITK---DSEILDDVG-DHHVYFV 192 (578)
Q Consensus 117 ~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~---~~~l~~~l~-~~~~~~~ 192 (578)
++.++||||||+|||+|+.++ | +++.+. ..+++||+++.++. .++++.+++ .+.++++
T Consensus 81 ~~~~~PvLGIClG~QlL~~~~-------G-----g~v~~~------~~~~~G~~~v~~~~~~~~~~l~~~~~~~~~v~~~ 142 (236)
T 3l7n_A 81 AKSEKIIVGVCLGAQLMGVAY-------G-----ADYLHS------PKKEIGNYLISLTEAGKMDSYLSDFSDDLLVGHW 142 (236)
T ss_dssp HHTTCEEEEETHHHHHHHHHT-------T-----CCCEEE------EEEEEEEEEEEECTTGGGCGGGTTSCSEEEEEEE
T ss_pred HHcCCCEEEEchHHHHHHHHh-------C-----CEEecC------CCceeeeEEEEEccCcccChHHhcCCCCcEEEEe
Confidence 999999999999999999952 3 455442 23688999999876 478888887 6789999
Q ss_pred eeeeeecCCCCCCcEEEEeecCCceEEEEE-eCCEEEEeeCCcccCcchHHHHHHHhhhccCC
Q 045794 193 HSYRAMPSDDNKEWVSSTCNYGDNFIASVR-RGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 193 H~~~v~~~~~~~~~~~~~~~~~d~~iegi~-~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~ 254 (578)
|++. ...+. ...+.+.+ .++.+++++ .+++||+|||||++ ..++++|++..+..
T Consensus 143 H~~~-~~lp~-~~~vla~s--~~~~~~a~~~~~~v~gvQfHPE~~----~~~~~~~~~~~~~~ 197 (236)
T 3l7n_A 143 HGDM-PGLPD-KAQVLAIS--QGCPRQIIKFGPKQYAFQCHLEFT----PELVAALIAQEDDL 197 (236)
T ss_dssp EEEE-CCCCT-TCEEEEEC--SSCSCSEEEEETTEEEESSBSSCC----HHHHHHHHHHCSCH
T ss_pred cCCc-ccCCC-hheEEEEC--CCCCEEEEEECCCEEEEEeCCCCC----HHHHHHHHHhhhhh
Confidence 9976 22222 12223333 334567777 46999999999996 47999999987653
|
| >1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-22 Score=198.31 Aligned_cols=179 Identities=18% Similarity=0.256 Sum_probs=130.8
Q ss_pred CCcEEEEEE-CCCCCHHHHHHHHHHCCCeEEEeCCc------cCCCCCCEEEECCCCCch--HH-HHHHHhhcHHHHHHH
Q 045794 46 SDSVVTLLD-YGAGNVRSVRNAIRHLGFGIKDVQTP------EDILNANRLIFPGVGAFA--AA-MDVLNKTGMAEALCA 115 (578)
Q Consensus 46 ~~~~I~vld-~~~g~~~~i~~~L~~~Gv~v~~v~~~------~dl~~~DGlILpGGg~~~--~~-~~~l~~~~l~~~i~~ 115 (578)
...+|.|+. +...+..++.+++++.|+++.+++.. +++.++||||||||+... .. ..++. .+.+++++
T Consensus 11 ~~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~--~~~~~i~~ 88 (239)
T 1o1y_A 11 HHVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLK--YEFQLIEE 88 (239)
T ss_dssp CCCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCGGGCSEEEECCCSCCTTCTTTCTHHH--HHHHHHHH
T ss_pred ceeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccccchhcCCEEEECCCCccccCCccChhHH--HHHHHHHH
Confidence 345676664 44668889999999999999876542 235789999999985222 11 33443 56788999
Q ss_pred HHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCc-ceeeeEEEEEccCCcccccCC-CeEEEEEe
Q 045794 116 YIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRV-PQIGWNALQITKDSEILDDVG-DHHVYFVH 193 (578)
Q Consensus 116 ~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~-~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H 193 (578)
+++.++|+||||+|||+|+.++ | +++.+. .. +++||+++.....++++++++ .+.++++|
T Consensus 89 ~~~~~~PiLGIC~G~QlL~~al-------G-----G~v~~~------~~g~~~G~~~v~~~~~~~l~~~~~~~~~~~~~H 150 (239)
T 1o1y_A 89 ILKKEIPFLGICLGSQMLAKVL-------G-----ASVYRG------KNGEEIGWYFVEKVSDNKFFREFPDRLRVFQWH 150 (239)
T ss_dssp HHHHTCCEEEETHHHHHHHHHT-------T-----CCEEEC------TTCCEEEEEEEEECCCCGGGTTSCSEEEEEEEE
T ss_pred HHHCCCCEEEEchhHHHHHHHc-------C-----CeEecC------CCCCccccEEEEECCCCchHHhCCCCceeEeec
Confidence 8889999999999999999952 2 566552 23 688999998777888988877 67899999
Q ss_pred eeeeecCCCCCCcEEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 194 SYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 194 ~~~v~~~~~~~~~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
++.+. .+. .. .......++.+++++.++++|+|||||++. .++++|++...
T Consensus 151 ~~~v~-lp~--~~-~vlA~s~~~~iea~~~~~i~gvQfHPE~~~----~~~~~~~~~~~ 201 (239)
T 1o1y_A 151 GDTFD-LPR--RA-TRVFTSEKYENQGFVYGKAVGLQFHIEVGA----RTMKRWIEAYK 201 (239)
T ss_dssp SEEEC-CCT--TC-EEEEECSSCSCSEEEETTEEEESSBSSCCH----HHHHHHHHHTH
T ss_pred CCccc-cCC--CC-EEEEEcCCCCEEEEEECCEEEEEeCccCCH----HHHHHHHHHhH
Confidence 99873 222 22 222233445578999877999999999954 58889987644
|
| >2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-22 Score=198.71 Aligned_cols=196 Identities=20% Similarity=0.228 Sum_probs=132.1
Q ss_pred CcEEEEEECCCCCHHHHHHHHHHC---CCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHh--hcHHHHHHHHHhC-C
Q 045794 47 DSVVTLLDYGAGNVRSVRNAIRHL---GFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNK--TGMAEALCAYIEK-D 120 (578)
Q Consensus 47 ~~~I~vld~~~g~~~~i~~~L~~~---Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~--~~l~~~i~~~~~~-g 120 (578)
+++|+|++++ +++.++.++|+++ |+++.+++.++++.++||||||||.+...+ ..... ..+.+.|+++++. +
T Consensus 3 ~~~I~Il~~~-~~~~~~~~~l~~~~~~G~~~~~~~~~~~l~~~dglil~GG~~~~~~-~~~~~d~~~~~~~i~~~~~~~g 80 (227)
T 2abw_A 3 EITIGVLSLQ-GDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVR-RCCAYENDTLYNALVHFIHVLK 80 (227)
T ss_dssp CEEEEEECTT-SCCHHHHHHHHTTCCTTEEEEEECSHHHHHTCSEEEECCSCHHHHH-HHTTHHHHHHHHHHHHHHHTSC
T ss_pred CcEEEEEeCC-CCcHHHHHHHHHhccCCeEEEEEcCccccccCCEEEECCCcHHHHH-HHHHHhHHHHHHHHHHHHHhcC
Confidence 4779999997 6777889999999 999999988877889999999998632221 22222 3578899999999 9
Q ss_pred CCEEEEechHHHHhhhcccC--CC----cCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEee
Q 045794 121 RPFLGICLGLQLLFQSSEEN--GP----VNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHS 194 (578)
Q Consensus 121 ~PIlGIClG~QlLa~a~~e~--~~----~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~ 194 (578)
+||||||+|||+|+.++.+. .. ..++|+++.++.+... +.....+. ..+.+. ......+ ..++.+..|+
T Consensus 81 ~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~~~~~~~~~~--g~~~~~~~-~~~~~~-~~~~~~g-~~~~~~~~h~ 155 (227)
T 2abw_A 81 KPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFY--GSQNDSFI-CSLNII-SDSSAFK-KDLTAACIRA 155 (227)
T ss_dssp CCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC------CCEEE-EECEEC-CCCTTCC-TTCEEEEESC
T ss_pred CEEEEECHHHHHHHHHhcCCccccccccccccCceeEEEEecCC--Cccccccc-cccccc-cccccCC-CceeEEEEEc
Confidence 99999999999999987543 11 6788888777654110 00000000 011111 1000001 2466778888
Q ss_pred eeeecC-CCCCCcEEEEeec---CCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 195 YRAMPS-DDNKEWVSSTCNY---GDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 195 ~~v~~~-~~~~~~~~~~~~~---~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
+.+... +.. ....+.... +++.+++++.++++|+|||||++... .++++|++.++
T Consensus 156 ~~v~~~~~~~-~~vla~~~~~~~g~~~~~a~~~~~v~gvQfHPE~~~~~--~l~~~Fl~~~~ 214 (227)
T 2abw_A 156 PYIREILSDE-VKVLATFSHESYGPNIIAAVEQNNCLGTVFHPELLPHT--AFQQYFYEKVK 214 (227)
T ss_dssp CEEEEECCTT-CEEEEEEEETTTEEEEEEEEEETTEEEESSCGGGSSCC--HHHHHHHHHHH
T ss_pred ceEeecCCCC-cEEEEEcccccCCCCceEEEEECCEEEEEECCeeCCCc--HHHHHHHHHHH
Confidence 776543 332 233344433 25678899999999999999997643 89999999875
|
| >1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-22 Score=207.83 Aligned_cols=175 Identities=18% Similarity=0.242 Sum_probs=120.2
Q ss_pred CcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc---CC--CCCCEEEECCCC-CchHHHHHHHhhcHHHHHHHHHhCC
Q 045794 47 DSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE---DI--LNANRLIFPGVG-AFAAAMDVLNKTGMAEALCAYIEKD 120 (578)
Q Consensus 47 ~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~---dl--~~~DGlILpGGg-~~~~~~~~l~~~~l~~~i~~~~~~g 120 (578)
+++|+++|+| .+.++.++|+++|+++.+++... ++ .++||||||||+ ++..+ ....+.++++++.+
T Consensus 190 ~~~V~viD~G--~k~ni~r~L~~~G~~v~vvp~~~~~e~i~~~~~DGliLsGGPgdp~~~------~~~~~~Ir~~~~~~ 261 (379)
T 1a9x_B 190 PFHVVAYDFG--AKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPC------DYAITAIQKFLETD 261 (379)
T ss_dssp CEEEEEEESS--CCHHHHHHHHHTTEEEEEEETTCCHHHHHTTCCSEEEECCCSBCSTTC------HHHHHHHHHHTTSC
T ss_pred CCEEEEEECC--ChHHHHHHHHHCCCEEEEEeccCCHHHHhhcCCCEEEEeCCCCChHHH------HHHHHHHHHHHHcC
Confidence 5789999986 66899999999999999887542 23 369999999984 33221 13457788888889
Q ss_pred CCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeE-EEEEccCCcccccCCCeEEEEEeeeeeec
Q 045794 121 RPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWN-ALQITKDSEILDDVGDHHVYFVHSYRAMP 199 (578)
Q Consensus 121 ~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~-~i~~~~~~~l~~~l~~~~~~~~H~~~v~~ 199 (578)
+||||||+|||+|+.+ .| +++.++ +.++.|++ ++....... -....++|++.+..
T Consensus 262 ~PILGIClG~QLLa~A-------~G-----G~v~k~------~~gh~g~n~pv~~~~~g~------v~its~~H~~aV~~ 317 (379)
T 1a9x_B 262 IPVFGICLGHQLLALA-------SG-----AKTVKM------KFGHHGGNHPVKDVEKNV------VMITAQNHGFAVDE 317 (379)
T ss_dssp CCEEEETHHHHHHHHH-------TT-----CCEEEE------EEEEEEEEEEEEETTTTE------EEEEEEEEEEEECS
T ss_pred CCEEEECchHHHHHHH-------hC-----cEEEec------ccccccCceeeEecCCCc------EEEEecCccceEec
Confidence 9999999999999995 23 455442 12344443 332111111 12235689998875
Q ss_pred CCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc--chHHHHHHHhhhccC
Q 045794 200 SDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD--VGLSVLRRFLHPKTN 253 (578)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~--~~~~l~~~Fl~~~~~ 253 (578)
...+..+.....+.+++.+|++++ +|+||+|||||++++ ++..||++|++.++.
T Consensus 318 ~~Lp~~~~v~a~s~~Dg~ieai~~~~~pi~gVQFHPE~~~~p~d~~~Lf~~Fl~~~~~ 375 (379)
T 1a9x_B 318 ATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGNPEASPGPHDAAPLFDHFIELIEQ 375 (379)
T ss_dssp TTCCTTEEEEEEETTTCCEEEEEESSSSEEEESSCTTCSSSCSTTTHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEEeCCCCcEEEEEECCCCEEEEEeCCcCCCCcccHHHHHHHHHHHHHH
Confidence 222223333333335678999984 589999999999764 567999999998753
|
| >3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-22 Score=199.63 Aligned_cols=178 Identities=15% Similarity=0.101 Sum_probs=128.0
Q ss_pred EEEEEEC-CCCCHHHHHHHHHHCCCeEEEeCC------ccCCCCCCEEEECCCCCchH-HHHHHHhhcHHHHHHHHHhCC
Q 045794 49 VVTLLDY-GAGNVRSVRNAIRHLGFGIKDVQT------PEDILNANRLIFPGVGAFAA-AMDVLNKTGMAEALCAYIEKD 120 (578)
Q Consensus 49 ~I~vld~-~~g~~~~i~~~L~~~Gv~v~~v~~------~~dl~~~DGlILpGGg~~~~-~~~~l~~~~l~~~i~~~~~~g 120 (578)
+|+|+.. +..+..++.++|+++|+++.+++. +.++.++|+||||||+.... ...++. .+.++++++++.+
T Consensus 5 ~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~~~~~d~lIl~GGp~~~~d~~~~~~--~~~~~i~~~~~~~ 82 (250)
T 3m3p_A 5 PVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEIRDCSGLAMMGGPMSANDDLPWMP--TLLALIRDAVAQR 82 (250)
T ss_dssp CEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCGGGSSEEEECCCSSCTTSCCTTHH--HHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCccccCCEEEECCCCCcccccchHHH--HHHHHHHHHHHcC
Confidence 4777753 467889999999999999988862 33577899999999864322 223343 4567888888899
Q ss_pred CCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccC---CcccccCC-CeEEEEEeeee
Q 045794 121 RPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKD---SEILDDVG-DHHVYFVHSYR 196 (578)
Q Consensus 121 ~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~---~~l~~~l~-~~~~~~~H~~~ 196 (578)
+|+||||+|||+|+.+ .| +++.+. ..+++||.++.++.. ++++ +++ .+.++++|++.
T Consensus 83 ~PvlGIC~G~Qll~~~-------lG-----G~V~~~------~~~e~G~~~v~~~~~~~~~~l~-g~~~~~~v~~~H~~~ 143 (250)
T 3m3p_A 83 VPVIGHCLGGQLLAKA-------MG-----GEVTDS------PHAEIGWVRAWPQHVPQALEWL-GTWDELELFEWHYQT 143 (250)
T ss_dssp CCEEEETHHHHHHHHH-------TT-----CCEEEE------EEEEEEEEEEEECSSHHHHHHH-SCSSCEEEEEEEEEE
T ss_pred CCEEEECHHHHHHHHH-------hC-----CEEEeC------CCCceeeEEEEEecCCCCcccc-cCCCccEEEEEccce
Confidence 9999999999999995 23 666652 246899999988764 5677 565 78999999998
Q ss_pred eecCCCCCCcEEEEeecCCceEEEEEe-CCEEEEeeCCcccCcchHHHHHHHhhhc
Q 045794 197 AMPSDDNKEWVSSTCNYGDNFIASVRR-GNVHAVQFHPEKSGDVGLSVLRRFLHPK 251 (578)
Q Consensus 197 v~~~~~~~~~~~~~~~~~d~~iegi~~-~~i~gvQFHPE~~~~~~~~l~~~Fl~~~ 251 (578)
+ ..+. .........+..+++++. ++++|+|||||++......++++|-+.+
T Consensus 144 v-~lp~---~~~vlA~s~~~~~~a~~~~~~~~GvQfHPE~~~~~~~~~l~~~~~~l 195 (250)
T 3m3p_A 144 F-SIPP---GAVHILRSEHCANQAYVLDDLHIGFQCHIEMQAHMVREWCSISPEEL 195 (250)
T ss_dssp E-CCCT---TEEEEEEETTEEEEEEEETTTEEEESSCTTCCHHHHHHHHHHCGGGS
T ss_pred e-ecCC---CCEEEEEeCCCCEEEEEECCeeEEEEeCCcCCHHHHHHHHHhhHHHH
Confidence 7 3332 222333334467899985 5899999999997644444444444333
|
| >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-22 Score=228.03 Aligned_cols=186 Identities=22% Similarity=0.279 Sum_probs=128.6
Q ss_pred CCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc---CC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCC
Q 045794 46 SDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE---DI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKD 120 (578)
Q Consensus 46 ~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~---dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g 120 (578)
.+.+|+|+|++.++...+.++++++|+.+++++... ++ .++||||||||+....+.... .+ .+...+.+
T Consensus 28 ~~~~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~~~~e~i~~~~~dGIILsGGp~s~~~~~~~---~~---~~~i~~~g 101 (697)
T 2vxo_A 28 YEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGPNSVYAEDAP---WF---DPAIFTIG 101 (697)
T ss_dssp -CCCEEEEEEC--CHHHHHHHHHHTTCCEEEEETTCCHHHHHHHTCSEEEEEECC-------CC---CC---CGGGTTSS
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCHHHHhhcCCCEEEECCCCCcccCccch---hH---HHHHHhCC
Confidence 345699999999898889999999999999887642 33 579999999986532211100 11 12334678
Q ss_pred CCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeec
Q 045794 121 RPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMP 199 (578)
Q Consensus 121 ~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~ 199 (578)
+||||||+|||+|+.++ | +++.+ ...+++|++++.+..++++|++++ ...++.+|++.+..
T Consensus 102 ~PvLGIC~G~QlLa~~l-------G-----G~v~~------~~~~e~G~~~v~~~~~~~Lf~~l~~~~~v~~~H~~~V~~ 163 (697)
T 2vxo_A 102 KPVLGICYGMQMMNKVF-------G-----GTVHK------KSVREDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDK 163 (697)
T ss_dssp CCEEEEEHHHHHHHHHT-------T-----CCBCC-------------CEEEEECTTSGGGTTCCSEEEECCCSSCCBSS
T ss_pred CCEEEECHHHHHHHHHh-------C-----CeEee------cCCCccceEEEEecCCChhhhcCCccCcceeecccceec
Confidence 99999999999999952 3 45443 223578999999888889998887 57888999998865
Q ss_pred CCCCCCcEEEEeecCCceEEEEE--eCCEEEEeeCCcccC-cchHHHHHHHh-hhccCCCCCCC
Q 045794 200 SDDNKEWVSSTCNYGDNFIASVR--RGNVHAVQFHPEKSG-DVGLSVLRRFL-HPKTNIPKKPT 259 (578)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~iegi~--~~~i~gvQFHPE~~~-~~~~~l~~~Fl-~~~~~~~~~~~ 259 (578)
.+.. ..+.+. .. +.+++++ .+++||+|||||.+. ..+..||++|+ +.+.+...+.+
T Consensus 164 lp~g-~~vlA~--s~-~~i~ai~~~~~~i~GvQFHPE~~~t~~g~~ll~nFl~~i~~~~~~~~~ 223 (697)
T 2vxo_A 164 VADG-FKVVAR--SG-NIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFTV 223 (697)
T ss_dssp CCTT-CEEEEE--ET-TEEEEEEETTTTEEEESSCTTSSSSTTHHHHHHHHHTTTTCCCSCCCH
T ss_pred CCCC-eEEEEE--eC-CceEEEEeCCCCEEEEEecccCCCCccchhhhhhhhhccccccccchh
Confidence 4432 222222 23 4889999 469999999999974 37899999999 77777666543
|
| >3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=217.67 Aligned_cols=189 Identities=15% Similarity=0.113 Sum_probs=128.7
Q ss_pred CCCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc--CCCCCCEEEECCCC-CchHHH-HHHHhhcHHHHHHHHHhCC
Q 045794 45 SSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE--DILNANRLIFPGVG-AFAAAM-DVLNKTGMAEALCAYIEKD 120 (578)
Q Consensus 45 ~~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~--dl~~~DGlILpGGg-~~~~~~-~~l~~~~l~~~i~~~~~~g 120 (578)
..+++|+|+|+++++.+++.++++++|+++++++... ++.++|||||+||. ++.... .++. .+.++++++++.+
T Consensus 444 ~~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~~~~~~~DgIIlsGGPg~p~d~~~p~i~--~~~~lI~~a~~~~ 521 (645)
T 3r75_A 444 LSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAVDLARYDVVVMGPGPGDPSDAGDPRIA--RLYAWLRHLIDEG 521 (645)
T ss_dssp STTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCCCCGGGCSEEEECCCSSCTTCTTSHHHH--HHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCcccccCCCEEEECCCCCChhhhhhhhHH--HHHHHHHHHHHCC
Confidence 3457899999999999999999999999998886543 45689999998873 332222 2343 4567888888899
Q ss_pred CCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeec
Q 045794 121 RPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMP 199 (578)
Q Consensus 121 ~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~ 199 (578)
+||||||+|||+|+.+ .| +++.+. ..++.|+........++++.++. .+.++.+|......
T Consensus 522 iPiLGIClG~QlLa~a-------lG-----G~V~~~------~~~~~G~~~~i~~~~~~l~~~~~~~~~v~~~h~~~~~~ 583 (645)
T 3r75_A 522 KPFMAVCLSHQILNAI-------LG-----IPLVRR------EVPNQGIQVEIDLFGQRERVGFYNTYVAQTVRDEMDVD 583 (645)
T ss_dssp CCEEEETHHHHHHHHH-------TT-----CCEEEE------EEEEEEEEEEEEETTEEEEEEEEEEEEEBCSCSEEEET
T ss_pred CCEEEECHHHHHHHHH-------hC-----CEEEcC------CCcccccceEEeeecCcceecCCCcEEEEEehhhcccc
Confidence 9999999999999995 23 455442 23455654332222334443322 11222222221111
Q ss_pred CCCCCCcEEEEeecCCceEEEEEeCCEEEEeeCCcccCc-chHHHHHHHhhhccCCCC
Q 045794 200 SDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGD-VGLSVLRRFLHPKTNIPK 256 (578)
Q Consensus 200 ~~~~~~~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~-~~~~l~~~Fl~~~~~~~~ 256 (578)
.+..+.......++.+++++++++||+|||||+... .+..||++|++.+...+.
T Consensus 584 ---lp~g~~v~A~s~dg~i~Ai~~~~~~GVQFHPE~~~t~~G~~Ll~nFl~~~~~~~~ 638 (645)
T 3r75_A 584 ---GVGTVAISRDPRTGEVHALRGPTFSSMQFHAESVLTVDGPRILGEAITHAIRREK 638 (645)
T ss_dssp ---TTEEEEEEECTTTCBEEEEEETTEEEESSBTTSTTCTTHHHHHHHHHHHHTTTTC
T ss_pred ---CCCCeEEEEEcCCCcEEEEEcCCEEEEEeCCeecCCcchHHHHHHHHHHHHhccc
Confidence 123344555556789999999999999999999654 789999999999876543
|
| >2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=189.56 Aligned_cols=198 Identities=16% Similarity=0.201 Sum_probs=123.2
Q ss_pred cEEEEE-ECC---CCCHHHHHHHHHHCC----CeEEEe--CCc-----------cCCCCCCEEEECCCCCchHHHHHHHh
Q 045794 48 SVVTLL-DYG---AGNVRSVRNAIRHLG----FGIKDV--QTP-----------EDILNANRLIFPGVGAFAAAMDVLNK 106 (578)
Q Consensus 48 ~~I~vl-d~~---~g~~~~i~~~L~~~G----v~v~~v--~~~-----------~dl~~~DGlILpGGg~~~~~~~~l~~ 106 (578)
++|+|+ ||+ .+++.++.++|+..| +++.++ +.. +.+.++||||||||... .. ..
T Consensus 9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~-~~---~~- 83 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGN-RG---VD- 83 (273)
T ss_dssp EEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTT-TT---HH-
T ss_pred CEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCC-cC---ch-
Confidence 679999 886 678888877776554 445443 211 23568999999998432 11 11
Q ss_pred hcHHHHHHHHHhCCCCEEEEechHHHHhhhcccC------------C---CcCCCcccCceeeeecCCCCCCcceeeeEE
Q 045794 107 TGMAEALCAYIEKDRPFLGICLGLQLLFQSSEEN------------G---PVNGLGLIPGVVGRFDSSNGFRVPQIGWNA 171 (578)
Q Consensus 107 ~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~------------~---~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~ 171 (578)
+..+.++++.+.++|+||||+|||+|+.++... + ...++++++.....++ ...++||++
T Consensus 84 -~~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~-----~~~~~g~~~ 157 (273)
T 2w7t_A 84 -GKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMG-----ANMHLGACD 157 (273)
T ss_dssp -HHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSC-----BCCEEEEEE
T ss_pred -hHHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccccC-----CcccccceE
Confidence 356778888888999999999999999853210 0 0111112222111110 112689999
Q ss_pred EEEcc-CCcccccCC-CeEE--EEEeeeeeecC--CCC-CCcEEEEeecCC----c-eEEEEEeC---CEEEEeeCCccc
Q 045794 172 LQITK-DSEILDDVG-DHHV--YFVHSYRAMPS--DDN-KEWVSSTCNYGD----N-FIASVRRG---NVHAVQFHPEKS 236 (578)
Q Consensus 172 i~~~~-~~~l~~~l~-~~~~--~~~H~~~v~~~--~~~-~~~~~~~~~~~d----~-~iegi~~~---~i~gvQFHPE~~ 236 (578)
+.++. ++++++.++ ...+ +++|+|.+.+. ... +..+.......+ + ++++++++ +++|+|||||++
T Consensus 158 v~~~~~~s~l~~~~~~~~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~~ 237 (273)
T 2w7t_A 158 VYIVEKSSIMAKIYSKSNIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFI 237 (273)
T ss_dssp EEECCTTSHHHHHTTTCSEEEEEEEECCEECGGGHHHHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGGS
T ss_pred EEEecCCcHHHHHhCCCceEEeecccccccCHHHHHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCcC
Confidence 98863 666765554 3344 45778887532 111 111223333333 4 89999954 467999999997
Q ss_pred Ccc--hHHHHHHHhhhccCCCC
Q 045794 237 GDV--GLSVLRRFLHPKTNIPK 256 (578)
Q Consensus 237 ~~~--~~~l~~~Fl~~~~~~~~ 256 (578)
... +..||++|++.++....
T Consensus 238 ~~~~~~~~l~~~Fv~~~~~~~~ 259 (273)
T 2w7t_A 238 STPMDPAPTYLSFMAAAAKKDY 259 (273)
T ss_dssp CBTTBCCHHHHHHHHHHHTCCC
T ss_pred CCCCchHHHHHHHHHHHHHHHH
Confidence 653 37999999999887633
|
| >2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-20 Score=189.20 Aligned_cols=200 Identities=21% Similarity=0.236 Sum_probs=125.8
Q ss_pred CCCcEEEEE-EC-CCCC-HHHHHHHHHHCCCe----EE--EeCC-----------cc-------CCCCCCEEEECCCCCc
Q 045794 45 SSDSVVTLL-DY-GAGN-VRSVRNAIRHLGFG----IK--DVQT-----------PE-------DILNANRLIFPGVGAF 97 (578)
Q Consensus 45 ~~~~~I~vl-d~-~~g~-~~~i~~~L~~~Gv~----v~--~v~~-----------~~-------dl~~~DGlILpGGg~~ 97 (578)
...++|+|+ || +.++ ..++.++|+++|+. +. +++. ++ .+.++||||||||...
T Consensus 23 ~~~~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgiil~GG~~~ 102 (289)
T 2v4u_A 23 MKICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPGGFGI 102 (289)
T ss_dssp CEEEEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHCSEEEECSCCSS
T ss_pred CCceEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhCCEEEecCCCCc
Confidence 445679999 99 7766 77999999988752 22 2221 11 1567999999998533
Q ss_pred hHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeec-------------CCC--CC
Q 045794 98 AAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFD-------------SSN--GF 162 (578)
Q Consensus 98 ~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~-------------~~~--~~ 162 (578)
. . +. ++.+.++++++.++||||||+|||+|+.++... . .++-+.....++ +.. ..
T Consensus 103 ~-~---~~--~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~--v--~~~~~~~~~e~~~~~~~~~i~~~~~h~~~~~~ 172 (289)
T 2v4u_A 103 R-G---TL--GKLQAISWARTKKIPFLGVXLGMQLAVIEFARN--C--LNLKDADSTEFRPNAPVPLVIDMPEHNPGNLG 172 (289)
T ss_dssp T-T---HH--HHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHH--H--SCCTTEEESTTCTTCSEEEEEECCBCCTTCSS
T ss_pred h-h---HH--HHHHHHHHHHHcCCcEEEECccHHHHHHHHhcc--c--cccccCcccccCccccccceecchhhcccccC
Confidence 1 1 12 467788998899999999999999999964210 0 000011100010 100 01
Q ss_pred CcceeeeEEEEEc-cCCcccccCCC-eEE--EEEeeeeeec--CCCCC-CcEEEEeecCCce-EEEEEeC--C-EEEEee
Q 045794 163 RVPQIGWNALQIT-KDSEILDDVGD-HHV--YFVHSYRAMP--SDDNK-EWVSSTCNYGDNF-IASVRRG--N-VHAVQF 231 (578)
Q Consensus 163 ~~~~~G~~~i~~~-~~~~l~~~l~~-~~~--~~~H~~~v~~--~~~~~-~~~~~~~~~~d~~-iegi~~~--~-i~gvQF 231 (578)
....+|++++.+. +++.+++.++. ..+ ++.|+|.+.+ +...+ ..+.......++. +|+++.+ + ++|+||
T Consensus 173 ~~~~~g~~~v~~~~~~s~l~~~~~~~~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~dg~~ieaie~~~~p~~lGvQf 252 (289)
T 2v4u_A 173 GTMRLGIRRTVFKTENSILRKLYGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQF 252 (289)
T ss_dssp CBCEEEEEEEEESCSCCHHHHHTTSCSEEEEEEEECEEECGGGSGGGTTSSEEEEEEETTSCSEEEEEESSSSCEEEESS
T ss_pred CccccceEEEEEecCCCHHHHhcCCCceEEEecccccccCHHHHHhcccCCeEEEEEcCCCCeEEEEEcCCCCeEEEEEC
Confidence 1234688888886 56666655542 333 4556676643 22222 3344444445675 9999953 4 569999
Q ss_pred CCcccCc--chHHHHHHHhhhccCC
Q 045794 232 HPEKSGD--VGLSVLRRFLHPKTNI 254 (578)
Q Consensus 232 HPE~~~~--~~~~l~~~Fl~~~~~~ 254 (578)
|||+... ++..+|++|++.++..
T Consensus 253 HPE~~~~~~~~~~lf~~Fv~~~~~~ 277 (289)
T 2v4u_A 253 HPEFSSRPMKPSPPYLGLLLAATGN 277 (289)
T ss_dssp BGGGGCBTTBCCHHHHHHHHHHHTC
T ss_pred CCCCCCCCCchHHHHHHHHHHHHhh
Confidence 9999754 3579999999988765
|
| >1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-19 Score=184.40 Aligned_cols=191 Identities=16% Similarity=0.177 Sum_probs=116.8
Q ss_pred CCcEEEEEECCCC-----------CHHHHHHHHHHCCCeEEEeCCccC-------CCCCCEEEECCCC-CchHH-HHHHH
Q 045794 46 SDSVVTLLDYGAG-----------NVRSVRNAIRHLGFGIKDVQTPED-------ILNANRLIFPGVG-AFAAA-MDVLN 105 (578)
Q Consensus 46 ~~~~I~vld~~~g-----------~~~~i~~~L~~~Gv~v~~v~~~~d-------l~~~DGlILpGGg-~~~~~-~~~l~ 105 (578)
.+|+|+|...... +..++.++|+++|+++++++...+ +.++||||||||+ +..+. .....
T Consensus 29 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~p~~~~~~~ 108 (315)
T 1l9x_A 29 KKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVA 108 (315)
T ss_dssp CCCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHH
T ss_pred CCCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccChhhhhHHH
Confidence 4678999853211 234688999999999999886432 3579999999996 43332 11111
Q ss_pred hhcHHHHHHHHHhC--CCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeee-EEEEEc---cCCc
Q 045794 106 KTGMAEALCAYIEK--DRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW-NALQIT---KDSE 179 (578)
Q Consensus 106 ~~~l~~~i~~~~~~--g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~-~~i~~~---~~~~ 179 (578)
..+.+.++++.+. ++||||||+|||+|+.++ |........ +..|. .++..+ ..++
T Consensus 109 -~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~-------GG~~~~~~~-----------~~~g~~~p~~~~~~~~~s~ 169 (315)
T 1l9x_A 109 -KIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLI-------SGECLLTAT-----------DTVDVAMPLNFTGGQLHSR 169 (315)
T ss_dssp -HHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHH-------HSSCCCEEE-----------EEEEEEECCEECSTTTTCS
T ss_pred -HHHHHHHHHHHhcCCCceEEEEChHHHHHHHHh-------CCccccccc-----------cccCCCCCeeeccCCCCCh
Confidence 2455666666555 499999999999999963 211111110 11222 223332 4567
Q ss_pred ccccCC-C--------eEEEEEeeeeeec--------CCCCCCcEEEEeecC-CceEEEEEe--CCEEEEeeCCcccC--
Q 045794 180 ILDDVG-D--------HHVYFVHSYRAMP--------SDDNKEWVSSTCNYG-DNFIASVRR--GNVHAVQFHPEKSG-- 237 (578)
Q Consensus 180 l~~~l~-~--------~~~~~~H~~~v~~--------~~~~~~~~~~~~~~~-d~~iegi~~--~~i~gvQFHPE~~~-- 237 (578)
+++.++ . ...+.+|++.+.+ .+. ...+.+.+..+ .+.++++++ .+++|+|||||+..
T Consensus 170 L~~~~~~~~~~~l~~~~~~~~~H~~~V~~~~~~~~~~l~~-g~~v~A~s~dg~ve~i~~i~~~~~~i~GVQfHPE~~~~e 248 (315)
T 1l9x_A 170 MFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKK-FFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYE 248 (315)
T ss_dssp TTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCHHHHH-HEEEEEEEESSSCEEEEEEEESSSCEEEESSCTTHHHHC
T ss_pred HHHhcChhhhhhccccceEEEhhhhhcCccccccccccCC-CCEEEEEcCCCCEEEEEEeccCCCCEEEEEeCCCCCccc
Confidence 777664 1 2245699998862 211 11222333322 233455565 48999999999842
Q ss_pred --c------------chHHHHHHHhhhccCCCC
Q 045794 238 --D------------VGLSVLRRFLHPKTNIPK 256 (578)
Q Consensus 238 --~------------~~~~l~~~Fl~~~~~~~~ 256 (578)
. ++..||++|++.++....
T Consensus 249 ~~~~~~~p~s~~a~~~~~~lf~~Fv~~a~~~~~ 281 (315)
T 1l9x_A 249 WKNLDGISHAPNAVKTAFYLAEFFVNEARKNNH 281 (315)
T ss_dssp CSSCTTCCCCHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ccccccCCccHHHHHHHHHHHHHHHHHHHhccC
Confidence 1 367999999999987644
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=169.02 Aligned_cols=216 Identities=33% Similarity=0.521 Sum_probs=180.0
Q ss_pred ecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh---hccccEEEeCCccccccCCCCccChHHHHH
Q 045794 305 NLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE---NVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 305 ~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~---~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
...++.+..+.+.+.+++ ++++|++... ..-+++++++.+ ...+|+.++++. . +.+.
T Consensus 10 ~~~~~~~a~~~~~~~~~d-lvl~D~~~p~------~~g~~~~~~l~~~~~~~~i~vi~~~~~--~-----------~~~~ 69 (237)
T 3cwo_X 10 DATNGREAVEKYKELKPD-IVTMDITMPE------MNGIDAIKEIMKIDPNAKIIVCSAMGQ--Q-----------AMVI 69 (237)
T ss_dssp CCCSSSTTHHHHHHHCCS-CEEEECCSTT------SSHHHHHHHHHHHSSSCCEEEECCSST--H-----------HHHH
T ss_pred ECCCHHHHHHHHHhcCCC-EEEEeCCCCC------CCHHHHHHHHHHhCCCCCEEEEECCCC--H-----------HHHH
Confidence 346777888888888888 9999998641 122677777654 345788777665 2 3488
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
++++.|++.+++....++. +++++++.+.++.+++++++|.+.. ++
T Consensus 70 ~~~~~Ga~~~l~kp~~~~~------------~~l~~~i~~~~~~~~~~~~~d~~~~--------------------~~-- 115 (237)
T 3cwo_X 70 EAIKAGAKDFIVNTAAVEN------------PSLITQIAQTFGSQAVVVAIDAKRV--------------------DG-- 115 (237)
T ss_dssp HHHHTTCCEEEESHHHHHC------------THHHHHHHHHHTGGGEEEEEEEEES--------------------SS--
T ss_pred HHHHCCHHheEeCCcccCh------------HHHHHHHHHHhCCCceEEEeeeccc--------------------CC--
Confidence 9999999999988765653 3677888889988889999986531 01
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~ 541 (578)
.+.+...+|...+..++.++++++...++..+++++++.+|+++|+++++++++++..++|+|+.||+.+++++.+++
T Consensus 116 --~~~v~~~~g~~~~~~~~~~~i~~~~~~~~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~ 193 (237)
T 3cwo_X 116 --EFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF 193 (237)
T ss_dssp --CEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHH
T ss_pred --cEEEEEeCCccccccCHHHHHHHHhhcCCCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHH
Confidence 246778888888888899999999999999999999999999999999999999998999999999999999999999
Q ss_pred HhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeec
Q 045794 542 RKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 577 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~ 577 (578)
+ .|++|+++||++|.+++++++++++|++.|+.++
T Consensus 194 ~-~G~~~~~vg~a~~~~~~~~~~~~~~l~~~~~~~~ 228 (237)
T 3cwo_X 194 L-AGADAALAASVFHFREIDVRELKEYLKKHGVNVR 228 (237)
T ss_dssp H-HTCSEEEESHHHHTTSSCHHHHHHHHHTTTCCCC
T ss_pred H-cCcHHHhhhHHHHcCCCCHHHHHHHHHHCCCcee
Confidence 6 8999999999999999999999999999999876
|
| >3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-18 Score=182.45 Aligned_cols=199 Identities=19% Similarity=0.201 Sum_probs=124.3
Q ss_pred CCCCCcEEEEEECCC---CCHHHHHHHHHHCC----C--eEEEeCCc----------cCCCCCCEEEECCCCCchHHHHH
Q 045794 43 ATSSDSVVTLLDYGA---GNVRSVRNAIRHLG----F--GIKDVQTP----------EDILNANRLIFPGVGAFAAAMDV 103 (578)
Q Consensus 43 ~~~~~~~I~vld~~~---g~~~~i~~~L~~~G----v--~v~~v~~~----------~dl~~~DGlILpGGg~~~~~~~~ 103 (578)
.+....+|+++.=.. ....++..+|+.+| + ++.+++.. +++.++||||+|||.....
T Consensus 289 ~~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G~~~---- 364 (535)
T 3nva_A 289 NSKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFGSRG---- 364 (535)
T ss_dssp TCCCEEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCSSTT----
T ss_pred CCCCeeEEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCCCcc----
Confidence 445668899985221 24446666666544 4 44455432 4578899999999843211
Q ss_pred HHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCce-----------eee-ecCC----CCCCccee
Q 045794 104 LNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGV-----------VGR-FDSS----NGFRVPQI 167 (578)
Q Consensus 104 l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~-----------v~~-~~~~----~~~~~~~~ 167 (578)
. .++.++++.+.+.++|+||||+|||+|+.++... . +|+-+.. +.. +... +....+.+
T Consensus 365 ~--~g~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~--v--~g~qda~s~Ef~~~~~~pvI~~m~eq~~~~~~ggtmrl 438 (535)
T 3nva_A 365 A--EGKIKAIKYAREHNIPFLGICFGFQLSIVEFARD--V--LGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRL 438 (535)
T ss_dssp H--HHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHT--T--TCCTTCEETTTCTTCSCEEEECBCSSSCBCSSCCCCEE
T ss_pred H--HHHHHHHHHHHHcCCcEEEECcchhHHHHHhhcc--c--cCccCCcccccCCCCCCCeeecchhcccccccCCcccc
Confidence 1 2567889999999999999999999999975311 0 1111111 111 1100 00112456
Q ss_pred eeEEEEEccCCcccccCCC--eEEEEEeeeeee-----cCCCCCCcEEEEeecCCceEEEEEe--CC-EEEEeeCCcccC
Q 045794 168 GWNALQITKDSEILDDVGD--HHVYFVHSYRAM-----PSDDNKEWVSSTCNYGDNFIASVRR--GN-VHAVQFHPEKSG 237 (578)
Q Consensus 168 G~~~i~~~~~~~l~~~l~~--~~~~~~H~~~v~-----~~~~~~~~~~~~~~~~d~~iegi~~--~~-i~gvQFHPE~~~ 237 (578)
|.+++.+.+++.+.+.+.. +.-.+.|+|.+. .... ..+..+....++.+|+++. .| ++|+|||||+.+
T Consensus 439 g~h~v~l~~gS~L~~iyG~~~I~erHrHryeVNs~h~q~l~~--~GL~vsA~s~DG~IEAIE~~~~pf~vGVQfHPE~~~ 516 (535)
T 3nva_A 439 GAQKIILKEGTIAYQLYGKKVVYERHRHRYEVNPKYVDILED--AGLVVSGISENGLVEIIELPSNKFFVATQAHPEFKS 516 (535)
T ss_dssp EEEEEEECTTSHHHHHHTSSEEEEEEEECCEECHHHHHHHHH--TTCEEEEECTTCCEEEEECTTSSCEEEESSCGGGGC
T ss_pred CceEEEEcCCCcHHHHhCCCeeeecccccceechHHHhhccc--CCeEEEEEeCCCCEEEEEeCCCCcEEEEEeCCEecC
Confidence 8899999888877665543 233345555553 2221 2344555556789999994 34 799999999965
Q ss_pred c--chHHHHHHHhhhccC
Q 045794 238 D--VGLSVLRRFLHPKTN 253 (578)
Q Consensus 238 ~--~~~~l~~~Fl~~~~~ 253 (578)
. .+..+|++|++++..
T Consensus 517 ~p~~~~~LF~~Fv~Aa~~ 534 (535)
T 3nva_A 517 RPTNPSPIYLGFIRAVAS 534 (535)
T ss_dssp CSSSCCHHHHHHHHHHTC
T ss_pred CCCChhHHHHHHHHHHHh
Confidence 3 467899999998753
|
| >1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-18 Score=190.95 Aligned_cols=193 Identities=19% Similarity=0.177 Sum_probs=112.3
Q ss_pred EEECCCCCHHHHHHHHHHCCCeEEEeC--Cc--------cCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCC
Q 045794 52 LLDYGAGNVRSVRNAIRHLGFGIKDVQ--TP--------EDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDR 121 (578)
Q Consensus 52 vld~~~g~~~~i~~~L~~~Gv~v~~v~--~~--------~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~ 121 (578)
+.|...+...++.+++.+.|+++.++. .. +.+.++||||||||.... .. .+..+.++++.+.++
T Consensus 312 l~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfGd~-~~-----~g~i~~ir~a~e~~i 385 (550)
T 1vco_A 312 MPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGVR-GI-----EGKVRAAQYARERKI 385 (550)
T ss_dssp --CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSST-TH-----HHHHHHHHHHHHTTC
T ss_pred EEecHHHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCCCc-ch-----hhhHHHHHHHHHCCC
Confidence 344433345667777777887777652 21 126789999999984221 11 145678888888999
Q ss_pred CEEEEechHHHHhhhcccCCCcCCCc----------ccCceeeeecCC----CCCCcceeeeEEEEEccCCcccccCCC-
Q 045794 122 PFLGICLGLQLLFQSSEENGPVNGLG----------LIPGVVGRFDSS----NGFRVPQIGWNALQITKDSEILDDVGD- 186 (578)
Q Consensus 122 PIlGIClG~QlLa~a~~e~~~~~Glg----------l~~~~v~~~~~~----~~~~~~~~G~~~i~~~~~~~l~~~l~~- 186 (578)
|+||||+|||+|+.++... ..++. .....+..+... +......+||+++.+.+++.+...+..
T Consensus 386 PiLGICLGmQlL~~a~Gg~--v~~l~~~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~~~s~l~~iy~~~ 463 (550)
T 1vco_A 386 PYLGICLGLQIAVIEFARN--VAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPGTLLHRLYGKE 463 (550)
T ss_dssp CEEEETHHHHHHHHHHHHH--TSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECTTSHHHHHHCCS
T ss_pred cEEEECcCHHHHHHHhCcc--cccCCccccccccCCCCCCeEEeccccccccccCCcccccceEEEEccCchhhHhcCCc
Confidence 9999999999999974311 11111 111112111100 000112358888888765433322222
Q ss_pred -eEEEEEeeeeee-----cCCCCCCcE-EEEeecC----CceEEEEEeC--CEE-EEeeCCcccCc--chHHHHHHHhhh
Q 045794 187 -HHVYFVHSYRAM-----PSDDNKEWV-SSTCNYG----DNFIASVRRG--NVH-AVQFHPEKSGD--VGLSVLRRFLHP 250 (578)
Q Consensus 187 -~~~~~~H~~~v~-----~~~~~~~~~-~~~~~~~----d~~iegi~~~--~i~-gvQFHPE~~~~--~~~~l~~~Fl~~ 250 (578)
+...++|.|.+. ..+. ..+. .+.+..+ ++++|+++++ |+| |+|||||+.+. ++..||++|++.
T Consensus 464 ~v~e~h~H~Y~Vns~~~~~l~~-~gl~v~a~s~dG~g~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p~~g~~LF~~Fv~a 542 (550)
T 1vco_A 464 EVLERHRHRYEVNPLYVDGLER-AGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEA 542 (550)
T ss_dssp EEEEEEEESEEECHHHHHHHHH-HTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBTTBCCHHHHHHHHH
T ss_pred eeeeeccceEEEchHHhhcccc-CCeEEEEEeCCCCccCCCcEEEEEeCCCCEEEEEEeCCccCCCCCChHHHHHHHHHH
Confidence 223456666553 2221 1222 2232222 3489999964 777 99999999765 378999999998
Q ss_pred ccC
Q 045794 251 KTN 253 (578)
Q Consensus 251 ~~~ 253 (578)
+..
T Consensus 543 a~~ 545 (550)
T 1vco_A 543 ALA 545 (550)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=8.4e-18 Score=166.14 Aligned_cols=195 Identities=21% Similarity=0.164 Sum_probs=144.2
Q ss_pred EEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 303 VRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 303 ~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+....+|.++|+.|.+.|+..|.+ + +.+.|+++++.+++|| +|--.+++.+.+.+|+|+++++++
T Consensus 32 l~~~~~~~~~A~a~~~~Ga~~i~~----~----------~~~~i~~ir~~v~~Pv-ig~~k~d~~~~~~~I~~~~~~i~~ 96 (232)
T 3igs_A 32 LDKPEIVAAMALAAEQAGAVAVRI----E----------GIDNLRMTRSLVSVPI-IGIIKRDLDESPVRITPFLDDVDA 96 (232)
T ss_dssp TCSHHHHHHHHHHHHHTTCSEEEE----E----------SHHHHHHHHTTCCSCE-EEECBCCCSSCCCCBSCSHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCeEEEE----C----------CHHHHHHHHHhcCCCE-EEEEeecCCCcceEeCccHHHHHH
Confidence 333458899999999999998775 1 2577899999999999 543233344434699999999999
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
++++|||.|++++.+..++ +++ .++++.+. +.| +.+..|+
T Consensus 97 ~~~~Gad~V~l~~~~~~~p-~~l-------~~~i~~~~-~~g---~~v~~~v---------------------------- 136 (232)
T 3igs_A 97 LAQAGAAIIAVDGTARQRP-VAV-------EALLARIH-HHH---LLTMADC---------------------------- 136 (232)
T ss_dssp HHHHTCSEEEEECCSSCCS-SCH-------HHHHHHHH-HTT---CEEEEEC----------------------------
T ss_pred HHHcCCCEEEECccccCCH-HHH-------HHHHHHHH-HCC---CEEEEeC----------------------------
Confidence 9999999999999877643 222 14444443 233 3343442
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe--ccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN--CIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t--di~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l 540 (578)
...+.++++++.|++.|.++ +.+..++..++++++++++++. ++|||++|||.+++|+.++
T Consensus 137 ----------------~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~-~ipvIA~GGI~t~~d~~~~ 199 (232)
T 3igs_A 137 ----------------SSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA-GCRVIAEGRYNSPALAAEA 199 (232)
T ss_dssp ----------------CSHHHHHHHHHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHH
T ss_pred ----------------CCHHHHHHHHhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc-CCcEEEECCCCCHHHHHHH
Confidence 22678899999999998754 3344444567899999999887 9999999999999999999
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
++ .||+||+||+++.......+++.+.++
T Consensus 200 ~~-~GadgV~VGsal~~p~~~~~~~~~~i~ 228 (232)
T 3igs_A 200 IR-YGAWAVTVGSAITRLEHICGWYNDALK 228 (232)
T ss_dssp HH-TTCSEEEECHHHHCHHHHHHHHHHHHH
T ss_pred HH-cCCCEEEEehHhcCHHHHHHHHHHHHH
Confidence 96 899999999999864444444444443
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=162.75 Aligned_cols=192 Identities=18% Similarity=0.115 Sum_probs=141.4
Q ss_pred EEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 303 VRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 303 ~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+....+|.++|+.|.+.|+..|.+ + +.+.|+++++.+++||. |--.+++.+.+.+|||+++++++
T Consensus 32 l~~~~~~~~~A~a~~~~Ga~~i~~----~----------~~~~i~~ir~~v~~Pvi-g~~k~~~~~~~~~I~~~~~~i~~ 96 (229)
T 3q58_A 32 MDKPEIVAAMAQAAASAGAVAVRI----E----------GIENLRTVRPHLSVPII-GIIKRDLTGSPVRITPYLQDVDA 96 (229)
T ss_dssp TCSHHHHHHHHHHHHHTTCSEEEE----E----------SHHHHHHHGGGCCSCEE-EECBCCCSSCCCCBSCSHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCcEEEE----C----------CHHHHHHHHHhcCCCEE-EEEeecCCCCceEeCccHHHHHH
Confidence 333458899999999999998875 1 15778999999999984 32223344434699999999999
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
++++|||.|++++....++ +++ .++++.+.+ .| +.+..|+
T Consensus 97 ~~~aGad~I~l~~~~~~~p-~~l-------~~~i~~~~~-~g---~~v~~~v---------------------------- 136 (229)
T 3q58_A 97 LAQAGADIIAFDASFRSRP-VDI-------DSLLTRIRL-HG---LLAMADC---------------------------- 136 (229)
T ss_dssp HHHHTCSEEEEECCSSCCS-SCH-------HHHHHHHHH-TT---CEEEEEC----------------------------
T ss_pred HHHcCCCEEEECccccCCh-HHH-------HHHHHHHHH-CC---CEEEEec----------------------------
Confidence 9999999999998876543 222 244544432 33 3333332
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe--ccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN--CIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t--di~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l 540 (578)
...+.++++++.|++.|.++ +.+..++..++|+++++++++. ++|||++|||.+++|+.++
T Consensus 137 ----------------~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~-~ipvIA~GGI~t~~d~~~~ 199 (229)
T 3q58_A 137 ----------------STVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA-GCRVIAEGRYNTPALAANA 199 (229)
T ss_dssp ----------------SSHHHHHHHHHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT-TCCEEEESSCCSHHHHHHH
T ss_pred ----------------CCHHHHHHHHhCCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc-CCCEEEECCCCCHHHHHHH
Confidence 23678899999999998754 3333334568899999999987 9999999999999999999
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVKE 567 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~~ 567 (578)
++ .||+||+||+++.......+++.+
T Consensus 200 ~~-~GadgV~VGsai~~p~~~~~~f~~ 225 (229)
T 3q58_A 200 IE-HGAWAVTVGSAITRIEHICQWFSH 225 (229)
T ss_dssp HH-TTCSEEEECHHHHCHHHHHHHHHH
T ss_pred HH-cCCCEEEEchHhcChHHHHHHHHH
Confidence 96 899999999999864333333333
|
| >1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-16 Score=174.82 Aligned_cols=199 Identities=19% Similarity=0.235 Sum_probs=114.9
Q ss_pred CCcEEEEEECC---CCCHHHHHHHHHHCCC----eEEEeCCc---------cCCCCCCEEEECCCCCchHHHHHHHhhcH
Q 045794 46 SDSVVTLLDYG---AGNVRSVRNAIRHLGF----GIKDVQTP---------EDILNANRLIFPGVGAFAAAMDVLNKTGM 109 (578)
Q Consensus 46 ~~~~I~vld~~---~g~~~~i~~~L~~~Gv----~v~~v~~~---------~dl~~~DGlILpGGg~~~~~~~~l~~~~l 109 (578)
..+.|+++.-. ..++.++.++|+++|+ ++.++... +.+.++||||||||...... .+.
T Consensus 288 ~~v~i~~vGkyv~l~D~y~Si~~aL~~~G~~~~~~V~i~~~d~e~i~~~~~~~l~~~DGIilsGGpg~~~~------~g~ 361 (545)
T 1s1m_A 288 SEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGV------EGM 361 (545)
T ss_dssp EEEEEEEEESSCSSGGGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTTH------HHH
T ss_pred CeEEeCCcCCeEEEEEHHHHHHHHHHHhCcccCCeEEEccCCHHHhhhhhhhhhhcCCEEEECCCCCCccc------hhh
Confidence 34556655311 1266788888888885 33332211 22678999999998432211 145
Q ss_pred HHHHHHHHhCCCCEEEEechHHHHhhhcccC------CCc--CCCcccCceeeeec----------CC-----CCCCcce
Q 045794 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEEN------GPV--NGLGLIPGVVGRFD----------SS-----NGFRVPQ 166 (578)
Q Consensus 110 ~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~------~~~--~Glgl~~~~v~~~~----------~~-----~~~~~~~ 166 (578)
.+.++++.+.++|+||||+|||+|+.++... ... .+-+.. ..+..+. +. +......
T Consensus 362 ~~~i~~a~~~~~PiLGIClG~Qll~va~Gg~v~~l~~a~s~E~~~~~~-hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmr 440 (545)
T 1s1m_A 362 ITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCK-YPVVALITEWRDENGNVEVRSEKSDLGGTMR 440 (545)
T ss_dssp HHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCS-CEEEECTTTCCCTTSCCC----------CCE
T ss_pred HHHHHHHHHCCCcEEEECChHHHHHHHhCCceecCCCCcccccCCCCC-CceEEeecccccccccccccccccccCcccc
Confidence 6788888888999999999999999864210 000 000000 0010000 00 0001123
Q ss_pred eeeEEEEEccCCcccccCCCe--EEEEEeeeeeec-----CCCCCCcEEEEeecCCc-eEEEEEe--CCEE-EEeeCCcc
Q 045794 167 IGWNALQITKDSEILDDVGDH--HVYFVHSYRAMP-----SDDNKEWVSSTCNYGDN-FIASVRR--GNVH-AVQFHPEK 235 (578)
Q Consensus 167 ~G~~~i~~~~~~~l~~~l~~~--~~~~~H~~~v~~-----~~~~~~~~~~~~~~~d~-~iegi~~--~~i~-gvQFHPE~ 235 (578)
+|++++.+.+++.+...+... ...+.|.|.+.+ .+ ...+ ..+....++ .+|+++. .|+| |+|||||+
T Consensus 441 lG~~~v~l~~~s~l~~iyg~~~v~e~h~Hry~VNs~~~~~l~-~~gl-~v~a~s~dg~~VEaie~~~~p~flGVQFHPE~ 518 (545)
T 1s1m_A 441 LGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIE-DAGL-RVAGRSGDDQLVEIIEVPNHPWFVACQFHPEF 518 (545)
T ss_dssp EEEEEEEECTTCHHHHHTTSSEEEEEEEECCEECHHHHHHHH-HTTC-EEEEECSSSCCEEEEECTTSSSEEEESSCGGG
T ss_pred ccceeeEeccCCHHHHhcCCceEEEecCcceEEChHHhhhcc-cCCe-EEEEECCCCCceEEEEeCCCCEEEEEeCCCCC
Confidence 578888887766554444322 334566666532 11 1223 333333444 8999995 3555 99999999
Q ss_pred cCc--chHHHHHHHhhhccC
Q 045794 236 SGD--VGLSVLRRFLHPKTN 253 (578)
Q Consensus 236 ~~~--~~~~l~~~Fl~~~~~ 253 (578)
.+. ++..||++|++.+..
T Consensus 519 ~~~p~~g~~LF~~Fv~aa~~ 538 (545)
T 1s1m_A 519 TSTPRDGHPLFAGFVKAASE 538 (545)
T ss_dssp TCCTTTCCHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHH
Confidence 754 468999999998754
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-15 Score=151.22 Aligned_cols=186 Identities=21% Similarity=0.136 Sum_probs=142.7
Q ss_pred EEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 303 VRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 303 ~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
.+. .||+++|+.|.+.||+.||++|.+....+. .+.++.+++.+++||+.+++|++..+ +.+
T Consensus 62 i~~-~~p~~~A~~~~~~GA~~isvlt~~~~f~G~------~~~l~~i~~~v~lPvl~kdfI~d~~q-----------i~~ 123 (254)
T 1vc4_A 62 IRE-VDPVEAALAYARGGARAVSVLTEPHRFGGS------LLDLKRVREAVDLPLLRKDFVVDPFM-----------LEE 123 (254)
T ss_dssp CCS-CCHHHHHHHHHHTTCSEEEEECCCSSSCCC------HHHHHHHHHHCCSCEEEESCCCSHHH-----------HHH
T ss_pred CCC-CCHHHHHHHHHHcCCCEEEEecchhhhccC------HHHHHHHHHhcCCCEEECCcCCCHHH-----------HHH
Confidence 345 699999999999999999999998865432 45566666678999999999999754 889
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
++++|||.|.+++.++. . .++ ++++. +..+|-+. +
T Consensus 124 a~~~GAD~VlL~~~~l~-~--~l~-------~l~~~-a~~lGl~~-l--------------------------------- 158 (254)
T 1vc4_A 124 ARAFGASAALLIVALLG-E--LTG-------AYLEE-ARRLGLEA-L--------------------------------- 158 (254)
T ss_dssp HHHTTCSEEEEEHHHHG-G--GHH-------HHHHH-HHHHTCEE-E---------------------------------
T ss_pred HHHcCCCEEEECccchH-H--HHH-------HHHHH-HHHCCCeE-E---------------------------------
Confidence 99999999999999886 2 221 33332 34677321 1
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-----CCcEEEecCCCCHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-----SIPVIASSGAGAVEHF 537 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-----~ipVIasGGi~s~eDi 537 (578)
+.+++|. -++.+.++|++.|-++.++-. -.++|++.++++.+.+ ++|+|++|||.+++|+
T Consensus 159 ----vev~~~~---------E~~~a~~~gad~IGvn~~~l~--~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv 223 (254)
T 1vc4_A 159 ----VEVHTER---------ELEIALEAGAEVLGINNRDLA--TLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEEL 223 (254)
T ss_dssp ----EEECSHH---------HHHHHHHHTCSEEEEESBCTT--TCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHH
T ss_pred ----EEECCHH---------HHHHHHHcCCCEEEEccccCc--CCCCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHH
Confidence 2244443 234677889998888886643 3478888888887766 7899999999999999
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHH
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
.++. . |++||+||++++..+.+-..++++
T Consensus 224 ~~l~-~-Ga~gvlVGsAl~~~~d~~~~~~~l 252 (254)
T 1vc4_A 224 KALE-G-LFDAVLIGTSLMRAPDLEAALREL 252 (254)
T ss_dssp HTTT-T-TCSEEEECHHHHTSSCHHHHHHHH
T ss_pred HHHH-c-CCCEEEEeHHHcCCCCHHHHHHHH
Confidence 9997 5 999999999999887766665554
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-15 Score=150.24 Aligned_cols=191 Identities=20% Similarity=0.132 Sum_probs=142.5
Q ss_pred EecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 304 RNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 304 ~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
+..-||.++|+.|.+.||+.|++++.+....| .++.++++++.+.+||...+.|.+.. +++++
T Consensus 69 ~~~~~p~~~A~~y~~~GA~~isvltd~~~f~G------s~~~l~~ir~~v~lPvl~kdfiid~~-----------qv~~A 131 (272)
T 3qja_A 69 ATIADPAKLAQAYQDGGARIVSVVTEQRRFQG------SLDDLDAVRASVSIPVLRKDFVVQPY-----------QIHEA 131 (272)
T ss_dssp ----CHHHHHHHHHHTTCSEEEEECCGGGHHH------HHHHHHHHHHHCSSCEEEESCCCSHH-----------HHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEecChhhcCC------CHHHHHHHHHhCCCCEEECccccCHH-----------HHHHH
Confidence 34469999999999999999999999876432 35678888888999999988887753 38889
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.++|||.|.|+...+.+ +++ .+++ +.+.++|-+ +++.+.
T Consensus 132 ~~~GAD~VlLi~a~l~~-~~l--------~~l~-~~a~~lGl~-~lvev~------------------------------ 170 (272)
T 3qja_A 132 RAHGADMLLLIVAALEQ-SVL--------VSML-DRTESLGMT-ALVEVH------------------------------ 170 (272)
T ss_dssp HHTTCSEEEEEGGGSCH-HHH--------HHHH-HHHHHTTCE-EEEEES------------------------------
T ss_pred HHcCCCEEEEecccCCH-HHH--------HHHH-HHHHHCCCc-EEEEcC------------------------------
Confidence 99999999999887763 222 1333 444567743 333221
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~ 541 (578)
+ .+.++.+.+.|++.|.++.. +.+..++|++.++++.+.+ ++|+++.|||.+++|+.++.
T Consensus 171 ---------------t-~ee~~~A~~~Gad~IGv~~r--~l~~~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~ 232 (272)
T 3qja_A 171 ---------------T-EQEADRALKAGAKVIGVNAR--DLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYA 232 (272)
T ss_dssp ---------------S-HHHHHHHHHHTCSEEEEESB--CTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHH
T ss_pred ---------------C-HHHHHHHHHCCCCEEEECCC--cccccccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHH
Confidence 1 23355566789999999964 4455578999999998877 79999999999999999998
Q ss_pred HhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 542 RKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
+ .|++||+||+++...+- +.+..+.|.+.
T Consensus 233 ~-~GadgvlVGsal~~a~d-p~~~~~~l~~~ 261 (272)
T 3qja_A 233 G-AGADAVLVGEGLVTSGD-PRAAVADLVTA 261 (272)
T ss_dssp H-TTCSEEEECHHHHTCSC-HHHHHHHHHTT
T ss_pred H-cCCCEEEEcHHHhCCCC-HHHHHHHHHhh
Confidence 5 99999999999997775 44444444443
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=145.25 Aligned_cols=191 Identities=16% Similarity=0.082 Sum_probs=148.6
Q ss_pred EecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 304 RNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 304 ~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
+..-||+++|+.|.+.||+.|++++.....++ +.+.++++++.+++||....+|++..+ +.++
T Consensus 76 ~~~~dp~~~A~~y~~~GA~~IsVltd~~~f~G------s~~~L~~ir~~v~lPVl~Kdfi~d~~q-----------i~ea 138 (272)
T 3tsm_A 76 RPDFDPPALAKAYEEGGAACLSVLTDTPSFQG------APEFLTAARQACSLPALRKDFLFDPYQ-----------VYEA 138 (272)
T ss_dssp CSSCCHHHHHHHHHHTTCSEEEEECCSTTTCC------CHHHHHHHHHTSSSCEEEESCCCSTHH-----------HHHH
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEeccccccCC------CHHHHHHHHHhcCCCEEECCccCCHHH-----------HHHH
Confidence 33469999999999999999999998776433 256677888889999999998888754 8899
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.++|||.|.++++.+.+ .++ ..+-+.+..+|- .+++.+.
T Consensus 139 ~~~GAD~VlLi~a~L~~-~~l---------~~l~~~a~~lGl-~~lvevh------------------------------ 177 (272)
T 3tsm_A 139 RSWGADCILIIMASVDD-DLA---------KELEDTAFALGM-DALIEVH------------------------------ 177 (272)
T ss_dssp HHTTCSEEEEETTTSCH-HHH---------HHHHHHHHHTTC-EEEEEEC------------------------------
T ss_pred HHcCCCEEEEcccccCH-HHH---------HHHHHHHHHcCC-eEEEEeC------------------------------
Confidence 99999999999988863 222 223334566773 3444331
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~ 541 (578)
+ .+.++++.++|++.|-++.++- +..++|++...++.+.+ ++|+|+.|||.+++|++++.
T Consensus 178 ---------------~-~eEl~~A~~~ga~iIGinnr~l--~t~~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~ 239 (272)
T 3tsm_A 178 ---------------D-EAEMERALKLSSRLLGVNNRNL--RSFEVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLE 239 (272)
T ss_dssp ---------------S-HHHHHHHTTSCCSEEEEECBCT--TTCCBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHH
T ss_pred ---------------C-HHHHHHHHhcCCCEEEECCCCC--ccCCCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHH
Confidence 1 3445777789999888886643 44578999999998877 68999999999999999998
Q ss_pred HhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 542 RKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
+ .|++||+||+++...+.+-..+++++..
T Consensus 240 ~-~Ga~gvLVG~almr~~d~~~~~~~l~~g 268 (272)
T 3tsm_A 240 K-SGIGTFLIGESLMRQHDVAAATRALLTG 268 (272)
T ss_dssp T-TTCCEEEECHHHHTSSCHHHHHHHHHHC
T ss_pred H-cCCCEEEEcHHHcCCcCHHHHHHHHHhc
Confidence 5 9999999999999888777777776653
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=152.72 Aligned_cols=204 Identities=18% Similarity=0.177 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHcCCCeEEEE-----ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFL-----NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~-----Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+|.++|+.|++.||++|.++ |+.++.+ ..+..+++.|+++++.+++||..++++..+++ ++.
T Consensus 29 ~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g--~~R~~~~~~i~~i~~~v~iPvl~k~~i~~ide-----------~qi 95 (297)
T 4adt_A 29 KNVEQAKIAEKAGAIGVMILENIPSELRNTDG--VARSVDPLKIEEIRKCISINVLAKVRIGHFVE-----------AQI 95 (297)
T ss_dssp SSHHHHHHHHHHTCSEEEECCCCC-----CCC--CCCCCCHHHHHHHHTTCCSEEEEEEETTCHHH-----------HHH
T ss_pred CcHHHHHHHHHcCCCEEEEecCCCCcchhcCC--cccCCCHHHHHHHHHhcCCCEEEeccCCcHHH-----------HHH
Confidence 55599999999999999999 8877632 24566799999999999999998888877654 999
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
+.++|||.| ++.....+ +++++.+.+.+..+.+++ |+++.. ...+..+.|
T Consensus 96 l~aaGAD~I--d~s~~~~~-----------~~li~~i~~~~~g~~vvv--~v~~~~---------Ea~~a~~~G------ 145 (297)
T 4adt_A 96 LEELKVDML--DESEVLTM-----------ADEYNHINKHKFKTPFVC--GCTNLG---------EALRRISEG------ 145 (297)
T ss_dssp HHHTTCSEE--EEETTSCC-----------SCSSCCCCGGGCSSCEEE--EESSHH---------HHHHHHHHT------
T ss_pred HHHcCCCEE--EcCCCCCH-----------HHHHHHHHhcCCCCeEEE--EeCCHH---------HHHHHHhCC------
Confidence 999999998 44333222 355667766554566766 333210 000000011
Q ss_pred ceEEEEEcccccCCC--CCHHHHHHHHHHcCCcEE-EEeccCCCC-----CCCCCCHHHHHHHHhhCCCcEE--EecCCC
Q 045794 463 AWYQCTVNGGREGRP--IGAYELAKAVEDLGAGEI-LLNCIDCDG-----QGKGFDMDLIKLISDAVSIPVI--ASSGAG 532 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~--~~~~e~~~~~~~~G~~~i-i~tdi~~dG-----~~~G~d~~li~~l~~~~~ipVI--asGGi~ 532 (578)
.+.|.++|. ..++ ++.+++++.+. ++| .++.++.++ +..++++++++++++.+++||+ +.|||+
T Consensus 146 -ad~I~v~g~-~gTG~~~~~v~h~~~~~----~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~~~iPVivvA~GGI~ 219 (297)
T 4adt_A 146 -ASMIRTKGE-AGTGNIIEAIKHIRTVN----NEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLKRLPVVNFAAGGIA 219 (297)
T ss_dssp -CSEEEECCC-TTSCCCHHHHHHHHHHH----HHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESCCC
T ss_pred -CCEEEECCC-cCCCchHHHHHHHHHhh----hhhhhhccccccccccccccCCCCHHHHHHHHHhcCCCeEEEecCCCC
Confidence 113444432 1122 23444444332 222 233344444 2347899999999998889987 999999
Q ss_pred CHHHHHHHHHhcCchHHhhhhhhccCCCC
Q 045794 533 AVEHFSDVFRKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 533 s~eDi~~l~~~~G~~gv~vgsa~~~~~~~ 561 (578)
+++|+.++++ .||++|+||+++...+-+
T Consensus 220 t~~dv~~~~~-~GAdgVlVGsai~~a~dp 247 (297)
T 4adt_A 220 TPADAAMCMQ-LGMDGVFVGSGIFESENP 247 (297)
T ss_dssp SHHHHHHHHH-TTCSCEEESHHHHTSSCH
T ss_pred CHHHHHHHHH-cCCCEEEEhHHHHcCCCH
Confidence 9999999986 899999999999876543
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.58 E-value=8.5e-15 Score=143.49 Aligned_cols=182 Identities=18% Similarity=0.133 Sum_probs=134.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.++.++|+.+.+.|++.+++- +.+.|+++++.+++|++ +.-.+.+.+..-.++++.+.++.++++
T Consensus 23 ~~~~~~a~~~~~~Ga~~i~~~--------------~~~~i~~i~~~~~~pv~-~~~~~~~~~~~~~i~~~~~~i~~~~~~ 87 (223)
T 1y0e_A 23 FIMSKMALAAYEGGAVGIRAN--------------TKEDILAIKETVDLPVI-GIVKRDYDHSDVFITATSKEVDELIES 87 (223)
T ss_dssp HHHHHHHHHHHHHTCSEEEEE--------------SHHHHHHHHHHCCSCEE-EECBCCCTTCCCCBSCSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCeeeccC--------------CHHHHHHHHHhcCCCEE-eeeccCCCccccccCCcHHHHHHHHhC
Confidence 367799999999999999861 14678888888899994 321222223233567888999999999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|++.|.+++.+..++.+.+ .++++++.+.|+. .++ .+++.
T Consensus 88 Gad~v~l~~~~~~~p~~~~-------~~~i~~~~~~~~~-~~v-~~~~~------------------------------- 127 (223)
T 1y0e_A 88 QCEVIALDATLQQRPKETL-------DELVSYIRTHAPN-VEI-MADIA------------------------------- 127 (223)
T ss_dssp TCSEEEEECSCSCCSSSCH-------HHHHHHHHHHCTT-SEE-EEECS-------------------------------
T ss_pred CCCEEEEeeecccCcccCH-------HHHHHHHHHhCCC-ceE-EecCC-------------------------------
Confidence 9999999998876431111 3778899888853 333 23321
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc-----CCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI-----DCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi-----~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~ 541 (578)
+ .+.+.++++.|++.|.+... .++++..++++++++++++.+++||++.|||++.+|+.+++
T Consensus 128 ------------t-~~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~ 194 (223)
T 1y0e_A 128 ------------T-VEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVM 194 (223)
T ss_dssp ------------S-HHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHH
T ss_pred ------------C-HHHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHH
Confidence 2 33467789999998875433 22222256788999999998999999999999999999999
Q ss_pred HhcCchHHhhhhhhcc
Q 045794 542 RKTNASAALAAGIFHR 557 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~ 557 (578)
+ .|+++|++|++++.
T Consensus 195 ~-~Gad~v~vG~al~~ 209 (223)
T 1y0e_A 195 D-LGVHCSVVGGAITR 209 (223)
T ss_dssp H-TTCSEEEECHHHHC
T ss_pred H-cCCCEEEEChHHcC
Confidence 6 89999999999986
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-14 Score=144.15 Aligned_cols=179 Identities=16% Similarity=0.160 Sum_probs=136.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
++.++|+.+.+.|++.+|+ | . .+.++.+++.+++|+ ++.--+.+.+..-.++++.+.++.++++|
T Consensus 37 ~~~~~a~~~~~~G~~~i~~-~--~-----------~~~i~~i~~~~~~p~-i~~~~~~~~~~~~~i~~~~~~i~~~~~~G 101 (234)
T 1yxy_A 37 IMPLMAKAAQEAGAVGIRA-N--S-----------VRDIKEIQAITDLPI-IGIIKKDYPPQEPFITATMTEVDQLAALN 101 (234)
T ss_dssp SHHHHHHHHHHHTCSEEEE-E--S-----------HHHHHHHHTTCCSCE-EEECBCCCTTSCCCBSCSHHHHHHHHTTT
T ss_pred hHHHHHHHHHHCCCcEeec-C--C-----------HHHHHHHHHhCCCCE-EeeEcCCCCccccccCChHHHHHHHHHcC
Confidence 7889999999999999986 2 1 356788888889998 43322334344446778899999999999
Q ss_pred cceeecchhhhccch-hhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 388 ADKISIGSDAVYAAE-DYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 388 a~~vv~gt~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|+.|.++..+..++. +.+ .++++++.+.|+... +.+++.
T Consensus 102 ad~V~l~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~--v~~~~~------------------------------- 141 (234)
T 1yxy_A 102 IAVIAMDCTKRDRHDGLDI-------ASFIRQVKEKYPNQL--LMADIS------------------------------- 141 (234)
T ss_dssp CSEEEEECCSSCCTTCCCH-------HHHHHHHHHHCTTCE--EEEECS-------------------------------
T ss_pred CCEEEEcccccCCCCCccH-------HHHHHHHHHhCCCCe--EEEeCC-------------------------------
Confidence 999999988765320 111 377888888885332 323321
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEE--EEeccCCCCC--CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEI--LLNCIDCDGQ--GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~i--i~tdi~~dG~--~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~ 542 (578)
+ .+.++.+.+.|++.| .++.++. ++ ..++++++++++++. ++||+++|||++.+++.++++
T Consensus 142 ------------t-~~ea~~a~~~Gad~i~~~v~g~~~-~~~~~~~~~~~~i~~~~~~-~ipvia~GGI~s~~~~~~~~~ 206 (234)
T 1yxy_A 142 ------------T-FDEGLVAHQAGIDFVGTTLSGYTP-YSRQEAGPDVALIEALCKA-GIAVIAEGKIHSPEEAKKIND 206 (234)
T ss_dssp ------------S-HHHHHHHHHTTCSEEECTTTTSST-TSCCSSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHT
T ss_pred ------------C-HHHHHHHHHcCCCEEeeeccccCC-CCcCCCCCCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHH
Confidence 1 344788899999998 5666543 33 468899999999888 999999999999999999995
Q ss_pred hcCchHHhhhhhhcc
Q 045794 543 KTNASAALAAGIFHR 557 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~ 557 (578)
.||+++++||+++.
T Consensus 207 -~Gad~v~vGsal~~ 220 (234)
T 1yxy_A 207 -LGVAGIVVGGAITR 220 (234)
T ss_dssp -TCCSEEEECHHHHC
T ss_pred -CCCCEEEEchHHhC
Confidence 89999999999987
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-13 Score=134.55 Aligned_cols=186 Identities=15% Similarity=0.124 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHcCCCeEEEE------ecccCCCC---------CCCCchhHHHHHHHhhhccccEEEeCCccccccCCCC
Q 045794 308 KPVELARQYYKEGADEISFL------NITGFRDF---------PLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGR 372 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~------Dl~~~~~~---------~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~ 372 (578)
+-++.|+.+.+. +++||+. ++|+..-. ..+-..-.++|+++++.+++||.++++++.. +
T Consensus 20 ~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~-----~ 93 (248)
T 1geq_A 20 STLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPI-----Y 93 (248)
T ss_dssp HHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHH-----H
T ss_pred HHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchh-----h
Confidence 446789999888 9999988 77763100 0011123789999999889999998887762 3
Q ss_pred ccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeee
Q 045794 373 HYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRV 452 (578)
Q Consensus 373 ~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~ 452 (578)
+|+..+.++.++++||+.|++++....+. +.+.++.+++|. ++++.++..
T Consensus 94 ~~~~~~~~~~~~~~Gad~v~~~~~~~~~~------------~~~~~~~~~~g~-~~~~~i~~~----------------- 143 (248)
T 1geq_A 94 RAGVRNFLAEAKASGVDGILVVDLPVFHA------------KEFTEIAREEGI-KTVFLAAPN----------------- 143 (248)
T ss_dssp HHCHHHHHHHHHHHTCCEEEETTCCGGGH------------HHHHHHHHHHTC-EEEEEECTT-----------------
T ss_pred hcCHHHHHHHHHHCCCCEEEECCCChhhH------------HHHHHHHHHhCC-CeEEEECCC-----------------
Confidence 44555679999999999999998777642 445566677884 466666421
Q ss_pred ccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCC---C--C-CHHHHHHHHhhCCCcEE
Q 045794 453 TDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK---G--F-DMDLIKLISDAVSIPVI 526 (578)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~---G--~-d~~li~~l~~~~~ipVI 526 (578)
++.+.++.+.+. ++.++++ ++..|... + + .++.++++++.+++||+
T Consensus 144 --------------------------t~~e~~~~~~~~-~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~ 195 (248)
T 1geq_A 144 --------------------------TPDERLKVIDDM-TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRICRNKVA 195 (248)
T ss_dssp --------------------------CCHHHHHHHHHH-CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHCSSCEE
T ss_pred --------------------------CHHHHHHHHHhc-CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhcCCCEE
Confidence 235666666665 5545544 44455322 2 2 36789999998899999
Q ss_pred EecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 527 asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
++|||++.+++.++++ .|+++|++||+++..
T Consensus 196 ~~GGI~~~e~i~~~~~-~Gad~vivGsai~~~ 226 (248)
T 1geq_A 196 VGFGVSKREHVVSLLK-EGANGVVVGSALVKI 226 (248)
T ss_dssp EESCCCSHHHHHHHHH-TTCSEEEECHHHHHH
T ss_pred EEeecCCHHHHHHHHH-cCCCEEEEcHHHHhh
Confidence 9999999999999985 899999999999854
|
| >2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=133.65 Aligned_cols=171 Identities=12% Similarity=0.006 Sum_probs=105.6
Q ss_pred CCcEEEEEECCCCCHHHH----HHHHHHCC--CeEEEeCCc-------------------cC--CCCCCEEEECCCCC--
Q 045794 46 SDSVVTLLDYGAGNVRSV----RNAIRHLG--FGIKDVQTP-------------------ED--ILNANRLIFPGVGA-- 96 (578)
Q Consensus 46 ~~~~I~vld~~~g~~~~i----~~~L~~~G--v~v~~v~~~-------------------~d--l~~~DGlILpGGg~-- 96 (578)
..++|+||++ +..+... .+.|...+ +++.++... .+ ..+|||+||.|+..
T Consensus 46 rplkI~ILnl-mp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~ 124 (312)
T 2h2w_A 46 RPLEILILNL-MPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVEL 124 (312)
T ss_dssp CCEEEEEECC-CSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTT
T ss_pred CCceEEEEeC-CCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCC
Confidence 3478999998 5555544 44454445 444444321 11 36799999999863
Q ss_pred -chHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEc
Q 045794 97 -FAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQIT 175 (578)
Q Consensus 97 -~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~ 175 (578)
...+..++. .+.+.++++.+.++|+||||+|+|+++.+. .|. .... .....+|+.++.++
T Consensus 125 ~~~ed~~yw~--el~~li~~~~~~~~p~LGIC~GaQ~~l~~~------~G~-----~k~~------~~~K~~Gv~~~~~~ 185 (312)
T 2h2w_A 125 LPFEEVDYWE--ELTEIMEWSRHNVYSTMFICWAAQAGLYYF------YGI-----PKYE------LPQKLSGVYKHRVA 185 (312)
T ss_dssp SCGGGSTTHH--HHHHHHHHHHHHEEEEEEETHHHHHHHHHH------HCC-----CCEE------EEEEEEEEEEEEES
T ss_pred CCCccCchHH--HHHHHHHHHHHcCCcEEEECHHHHHHHHHh------CCC-----cccc------CCCCEEEEEEEEEc
Confidence 123334444 366777777788999999999999977641 121 1111 12356888888888
Q ss_pred cCCcccccCC-CeEEEEEeeeeee--cCCCC-CCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc
Q 045794 176 KDSEILDDVG-DHHVYFVHSYRAM--PSDDN-KEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD 238 (578)
Q Consensus 176 ~~~~l~~~l~-~~~~~~~H~~~v~--~~~~~-~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~ 238 (578)
..++++.+++ .+.+.++|...+. .++.. ...+++.+ ...-+++++. ++++++|||||++..
T Consensus 186 ~~~pL~~g~~~~f~vphsr~~e~~~~~v~~~pga~vLA~S--~~~~~q~~~~~~~~~~~vQgHPEyd~~ 252 (312)
T 2h2w_A 186 KDSVLFRGHDDFFWAPHSRYTEVKKEDIDKVPELEILAES--DEAGVYVVANKSERQIFVTGHPEYDRY 252 (312)
T ss_dssp SCCGGGTTCCSEEEEEEEEEEECCHHHHTTCC-CEEEEEE--TTTEEEEEECSSSSEEEECSCTTCCTT
T ss_pred CCCccccCCCCceEeeEEeccccCHHHccCCCCCEEEEcC--CCCcceEEEecCCCEEEEECCCCCCHH
Confidence 8788988876 5666665443322 12222 12222332 2234677874 589999999999775
|
| >2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-12 Score=131.48 Aligned_cols=172 Identities=13% Similarity=0.071 Sum_probs=103.1
Q ss_pred CCcEEEEEECCCCCHHHHHH----HHHHCC--CeEEEeCCc--c--------------C-----CCCCCEEEECCCCC--
Q 045794 46 SDSVVTLLDYGAGNVRSVRN----AIRHLG--FGIKDVQTP--E--------------D-----ILNANRLIFPGVGA-- 96 (578)
Q Consensus 46 ~~~~I~vld~~~g~~~~i~~----~L~~~G--v~v~~v~~~--~--------------d-----l~~~DGlILpGGg~-- 96 (578)
..++|+|+++ +..+....+ .|...+ +++.++... + + ..+|||+||.||..
T Consensus 34 rplkI~ILnl-mp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~ 112 (301)
T 2vdj_A 34 RALKIAILNL-MPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVET 112 (301)
T ss_dssp CCEEEEEECC-CSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTT
T ss_pred CCceEEEEeC-CCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcC
Confidence 3578999998 555555443 333334 444444321 1 1 36799999999863
Q ss_pred -chHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEc
Q 045794 97 -FAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQIT 175 (578)
Q Consensus 97 -~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~ 175 (578)
...+..++. .+.+.++++.+.++|+||||+|+|+++.+. .|. .... .....+|+.++.++
T Consensus 113 ~~~ed~~yw~--el~~li~~~~~~~~~~lgIC~GaQ~~l~~~------~G~-----~k~~------~~~K~~Gv~~~~~~ 173 (301)
T 2vdj_A 113 LSFEEVDYWE--ELKRIMEYSKTNVTSTLHICWGAQAGLYHH------YGV-----QKYP------LKEKMFGVFEHEVR 173 (301)
T ss_dssp SCGGGSTTHH--HHHHHHHHHHHHEEEEEEETHHHHHHHHHH------HCC-----CCEE------EEEEEEEEEEEEEC
T ss_pred CCcccCchHH--HHHHHHHHHHHcCCcEEEEcHHHHHHHHHh------CCC-----cccc------CCCCEEEEEEEEec
Confidence 123334444 366777887788999999999999976641 221 1111 12346787777766
Q ss_pred c-CCcccccCC-CeEEEEEeeeeeec--CCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccCc
Q 045794 176 K-DSEILDDVG-DHHVYFVHSYRAMP--SDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSGD 238 (578)
Q Consensus 176 ~-~~~l~~~l~-~~~~~~~H~~~v~~--~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~~ 238 (578)
. .++++.+++ .+.+.++|+..+.. ++..+ .+...+.....-+++++. ++++++|||||++..
T Consensus 174 ~~~~pL~~g~~~~f~~phsr~~~~~~~~v~~~p-ga~vLA~S~~~~~~~~~~~~~~~~~vQgHpEyd~~ 241 (301)
T 2vdj_A 174 EQHVKLLQGFDELFFAVHSRHTEVRESDIREVK-ELTLLANSEEAGVHLVIGQEGRQVFALGHSEYSCD 241 (301)
T ss_dssp CSSCGGGTTCCSEEEEEEEEEEECCHHHHHTCT-TEEEEEEETTTEEEEEEEGGGTEEEECSCTTCCTT
T ss_pred CCCCccccCCCCceEeeeEeccCcCHHHccCCC-CCEEEEeCCCCcceEEEecCCCEEEEECCCCCCHH
Confidence 4 568888776 56666654432221 22211 222222222234577764 589999999999875
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-13 Score=138.54 Aligned_cols=204 Identities=16% Similarity=0.127 Sum_probs=128.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEe----cccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccc--cccCCCCccChHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLN----ITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRD--FTDANGRHYSSLEVA 380 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~D----l~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~--~~d~~~~~~~~~~~~ 380 (578)
.+|+++|+.+.+.|++.|+++| ++....+. .+..+.+.|+++++.+++|+++ ++|. . +.+
T Consensus 28 ~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~-~~~~~~~~i~~I~~~~~iPv~~--k~r~g~~-----------~~~ 93 (305)
T 2nv1_A 28 VINAEQAKIAEEAGAVAVMALERVPADIRAAGGV-ARMADPTIVEEVMNAVSIPVMA--KARIGHI-----------VEA 93 (305)
T ss_dssp ESSHHHHHHHHHTTCSEEEECCC-------CCCC-CCCCCHHHHHHHHHHCSSCEEE--EECTTCH-----------HHH
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCc-ccCCCHHHHHHHHHhCCCCEEe--cccccch-----------HHH
Confidence 4899999999999999999886 33332221 1344688999999989999985 4443 3 348
Q ss_pred HHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCC
Q 045794 381 SEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGE 460 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (578)
+.++++|||.|+ ++..+. +.++. ++++ ...||.. +++ ++.... ...+..+.|.
T Consensus 94 ~~~~a~GAd~V~-~~~~l~-~~~~~--------~~i~--~~~~g~~-v~~--~~~~~~---------e~~~a~~~Ga--- 146 (305)
T 2nv1_A 94 RVLEAMGVDYID-ESEVLT-PADEE--------FHLN--KNEYTVP-FVC--GCRDLG---------EATRRIAEGA--- 146 (305)
T ss_dssp HHHHHHTCSEEE-ECTTSC-CSCSS--------CCCC--GGGCSSC-EEE--EESSHH---------HHHHHHHTTC---
T ss_pred HHHHHCCCCEEE-EeccCC-HHHHH--------HHHH--HhccCCc-EEE--EeCCHH---------HHHHHHHCCC---
Confidence 889999999997 666654 22110 1222 3467743 333 332200 0000001111
Q ss_pred CcceEEEEEcccccCCCCCHHHHHHHHHH--cCCcEEEEeccCCCCCC-----CCCCHHHHHHHHhhCCCcEE--EecCC
Q 045794 461 EYAWYQCTVNGGREGRPIGAYELAKAVED--LGAGEILLNCIDCDGQG-----KGFDMDLIKLISDAVSIPVI--ASSGA 531 (578)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~e~~~~~~~--~G~~~ii~tdi~~dG~~-----~G~d~~li~~l~~~~~ipVI--asGGi 531 (578)
..|.+.||. .++ ++.+....... .++.. ++++++++.+ .+.++++++++++.+++||+ ++|||
T Consensus 147 ----d~V~~~G~~-g~g-~~~~~~~h~rt~~~~i~~--l~gi~~~~~~~~~~~~~~~~~~i~~i~~~~~iPvi~~a~GGI 218 (305)
T 2nv1_A 147 ----SMLRTKGEP-GTG-NIVEAVRHMRKVNAQVRK--VVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGV 218 (305)
T ss_dssp ----SEEEECCCT-TSC-CTHHHHHHHHHHHHHHHH--HHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSCEEBCSCC
T ss_pred ----CEEEecccc-Ccc-chHHHHhhhhhhhccchh--hccccchhhhcccccccccHHHHHHHHHhcCCCEEEEeccCC
Confidence 134555554 222 33333322211 11111 2566666654 57899999999998899999 99999
Q ss_pred CCHHHHHHHHHhcCchHHhhhhhhccCCC
Q 045794 532 GAVEHFSDVFRKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 532 ~s~eDi~~l~~~~G~~gv~vgsa~~~~~~ 560 (578)
.+.+|+.++++ .||+||++|++++....
T Consensus 219 ~~~~d~~~~~~-~GadgV~vGsai~~~~~ 246 (305)
T 2nv1_A 219 ATPADAALMMQ-LGADGVFVGSGIFKSDN 246 (305)
T ss_dssp CSHHHHHHHHH-TTCSCEEECGGGGGSSC
T ss_pred CCHHHHHHHHH-cCCCEEEEcHHHHcCCC
Confidence 99999999986 89999999999987543
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=130.35 Aligned_cols=123 Identities=41% Similarity=0.690 Sum_probs=102.3
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
|+|++|||++++ +| +|.|.++||....+.++.++++.+++.|++.|.+++.+++|+
T Consensus 2 q~ii~~iD~~~~--------------------~g----~~~v~~~~g~~~~~~~~~~~a~~~~~~Ga~~i~v~d~~~~~~ 57 (266)
T 2w6r_A 2 QRVVVAIDAKRV--------------------DG----EFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT 57 (266)
T ss_dssp CEEEEEEEEEEE--------------------TT----EEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTSSC
T ss_pred CeEEEEEEEEcC--------------------CC----CEEEEEcCCeeccCCCHHHHHHHHHHCCCCEEEEEecCcccC
Confidence 689999999851 01 258999999887777899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCC
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEG 573 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~ 573 (578)
..|++++.++++++.+++||+++||+.+++++.++++ .||++|++|++++++.+.+..+++.++..|
T Consensus 58 ~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~-~Gad~v~lg~~~~~~~~~~~~~~~~~~~~g 124 (266)
T 2w6r_A 58 KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-AGADKALAASVFHFREIDMRELKEYLKKHG 124 (266)
T ss_dssp SSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHH-HTCSEEECCCCC------CHHHHHHCC---
T ss_pred CCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCcHhhhhHHHHhCCCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999986 899999999999866556677777765544
|
| >3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.1e-11 Score=140.47 Aligned_cols=179 Identities=20% Similarity=0.286 Sum_probs=113.7
Q ss_pred CCCcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeC------CccCCCCCCEEEECCCCCchHHH--------HHHHhhcH
Q 045794 45 SSDSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQ------TPEDILNANRLIFPGVGAFAAAM--------DVLNKTGM 109 (578)
Q Consensus 45 ~~~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~------~~~dl~~~DGlILpGGg~~~~~~--------~~l~~~~l 109 (578)
..+|+|+|++|+ ..+-.++.++|+.+|+++..+. ..+++.++|+|++|||.++.+.+ ..+....+
T Consensus 1045 ~~~pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~d~lvlPGGfSygD~l~~g~~~a~~~l~~~~l 1124 (1303)
T 3ugj_A 1045 GARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRV 1124 (1303)
T ss_dssp TCCCEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCCGGGCSEEEECCSCGGGGTTSTTHHHHHHHHTSHHH
T ss_pred CCCCEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccCcccHhhCCEEEECCCCcchhhhccchhHHHHHHhchhH
Confidence 468999999996 5556899999999999988763 34568899999999997665432 12233346
Q ss_pred HHHHHHHH-hCCCCEEEEechHHHHhhhcccCCCcCCCcccCce-----eeeecCCCCCCcceeeeEEEEEcc-CCcccc
Q 045794 110 AEALCAYI-EKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGV-----VGRFDSSNGFRVPQIGWNALQITK-DSEILD 182 (578)
Q Consensus 110 ~~~i~~~~-~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~-----v~~~~~~~~~~~~~~G~~~i~~~~-~~~l~~ 182 (578)
.+.++++. +.++|+||||.|||+|+.. .|++|+. ..+ +. ..+. .-.|..+++.. ++++++
T Consensus 1125 ~~~l~~~~~~~g~pvLGICnG~QlL~e~---------~gllPg~~~~p~l~~--N~-s~~f-~~r~~~~~v~~~~s~~~~ 1191 (1303)
T 3ugj_A 1125 RDEFETFFHRPQTLALGVCNGCQMMSNL---------RELIPGSELWPRFVR--NH-SDRF-EARFSLVEVTQSPSLLLQ 1191 (1303)
T ss_dssp HHHHHHHHHSSSCEEEEETHHHHHHHTT---------GGGSTTCTTCCEEEC--CT-TSSC-EEEEEEEEECCCSCGGGT
T ss_pred HHHHHHHHHhCCCcEEEECHHHHHHHHh---------cCcCCCCCCCCeEec--CC-CCCe-EEeCeEEEECCCCChhhh
Confidence 66777755 5799999999999999983 1455554 222 11 1111 12355566543 456777
Q ss_pred cCC--CeEEEEEeeeeeecCCC--------CCCcEEEEe-e-----------cCCc---eEEEEE--eCCEEEEeeCCcc
Q 045794 183 DVG--DHHVYFVHSYRAMPSDD--------NKEWVSSTC-N-----------YGDN---FIASVR--RGNVHAVQFHPEK 235 (578)
Q Consensus 183 ~l~--~~~~~~~H~~~v~~~~~--------~~~~~~~~~-~-----------~~d~---~iegi~--~~~i~gvQFHPE~ 235 (578)
++. ...+.-.|+........ ....+.... + ..++ -|+|+. +++++|...|||.
T Consensus 1192 ~~~g~~~~i~vaHgEG~~~~~~~~~l~~l~~~~~v~~rY~d~~g~~~~~yp~NPNGS~~~IaGi~s~~Grvlg~MpHPEr 1271 (1303)
T 3ugj_A 1192 GMVGSQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGRVTIMMPHPER 1271 (1303)
T ss_dssp TCTTCEEEEEEEESSCEEECSSHHHHHHHHHTTCEEEEEBCTTSCBCCSTTTSSSCCGGGEEEEECTTSSEEEESSBGGG
T ss_pred ccCCCEEeeeeEeCCCCeeeCCHHHHHHHHhCCcEEEEEeCCCCCcccCCCCCCCCChhhceEeECCCCCEEEEcCChHH
Confidence 765 24445566543321110 111222221 1 1122 378887 4799999999998
Q ss_pred c
Q 045794 236 S 236 (578)
Q Consensus 236 ~ 236 (578)
.
T Consensus 1272 ~ 1272 (1303)
T 3ugj_A 1272 V 1272 (1303)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-11 Score=117.78 Aligned_cols=192 Identities=11% Similarity=0.090 Sum_probs=132.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+..+.++.+.+.|++.+|+.++|+.... .-....+.++++++.++.|+.+++.+++.++ .++.+.++
T Consensus 16 ~~~~~~~~~~~~~G~~~i~~~~~dg~~~~--~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~----------~i~~~~~~ 83 (220)
T 2fli_A 16 ANFASELARIEETDAEYVHIDIMDGQFVP--NISFGADVVASMRKHSKLVFDCHLMVVDPER----------YVEAFAQA 83 (220)
T ss_dssp GGHHHHHHHHHHTTCCEEEEEEEBSSSSS--CBCBCHHHHHHHHTTCCSEEEEEEESSSGGG----------GHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCCCCC--ccccCHHHHHHHHHhCCCCEEEEEeecCHHH----------HHHHHHHc
Confidence 35668889999999999999988875211 1123378999999888889999999998753 37889999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|+|.|.+......... +.++. .+++| .++.++++....
T Consensus 84 gad~v~vh~~~~~~~~-----------~~~~~-~~~~g-~~i~~~~~~~t~----------------------------- 121 (220)
T 2fli_A 84 GADIMTIHTESTRHIH-----------GALQK-IKAAG-MKAGVVINPGTP----------------------------- 121 (220)
T ss_dssp TCSEEEEEGGGCSCHH-----------HHHHH-HHHTT-SEEEEEECTTSC-----------------------------
T ss_pred CCCEEEEccCccccHH-----------HHHHH-HHHcC-CcEEEEEcCCCC-----------------------------
Confidence 9999999776654221 23344 45576 468887753221
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc--CCCCCCCCCC-HHHHHHHHhhC-----CCcEEEecCCCCHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI--DCDGQGKGFD-MDLIKLISDAV-----SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi--~~dG~~~G~d-~~li~~l~~~~-----~ipVIasGGi~s~eDi~ 538 (578)
.+.++.+. .+++.|++... ..+|...+++ ++.++++++.+ ++|+++.|||+ ++++.
T Consensus 122 --------------~e~~~~~~-~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~ 185 (220)
T 2fli_A 122 --------------ATALEPLL-DLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIR 185 (220)
T ss_dssp --------------GGGGGGGT-TTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHH
T ss_pred --------------HHHHHHHH-hhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHH
Confidence 11222222 34888877443 3445444442 34455555543 78999999998 89999
Q ss_pred HHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
++.+ .|++++++||+++... ++.+..+.|+
T Consensus 186 ~~~~-~Gad~vvvGsai~~~~-d~~~a~~~~~ 215 (220)
T 2fli_A 186 ACYE-AGANVFVAGSYLFKAS-DLVSQVQTLR 215 (220)
T ss_dssp HHHH-HTCCEEEESHHHHTSS-CHHHHHHHHH
T ss_pred HHHH-cCCCEEEEChHHhCCC-CHHHHHHHHH
Confidence 9875 8999999999999874 4555555554
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-12 Score=132.41 Aligned_cols=207 Identities=15% Similarity=0.121 Sum_probs=126.4
Q ss_pred CCHHHHHHHHHHcCCCeEEE---Eecc-cCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISF---LNIT-GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~---~Dl~-~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
-.|.++|+.+.+.|++.||+ ++.+ .+.++ .....+++.|+++++.+++|++++.++++. +.++.
T Consensus 28 ~~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G-~~~~~~~~~i~~i~~~~~~Pvi~~~~~~~~-----------~~~~~ 95 (297)
T 2zbt_A 28 VTTPEQAVIAEEAGAVAVMALERVPADIRAQGG-VARMSDPKIIKEIMAAVSIPVMAKVRIGHF-----------VEAMI 95 (297)
T ss_dssp ESSHHHHHHHHHHTCSEEEECSSCHHHHHHTTC-CCCCCCHHHHHHHHTTCSSCEEEEEETTCH-----------HHHHH
T ss_pred echHHHHHHHHHCCCcEEEeccccchHHHhhcC-CccCCCHHHHHHHHHhcCCCeEEEeccCCH-----------HHHHH
Confidence 46799999999999999998 5554 22222 112456889999999899999987777764 45999
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
++++|||.| .++.... . +++++++.+.+. .+.+++|+.... ...+..+.|.+
T Consensus 96 ~~~aGad~v-~~~~~~~-~-----------~~~~~~~~~~~~--~i~l~~~v~~~~---------~~~~a~~~Gad---- 147 (297)
T 2zbt_A 96 LEAIGVDFI-DESEVLT-P-----------ADEEHHIDKWKF--KVPFVCGARNLG---------EALRRIAEGAA---- 147 (297)
T ss_dssp HHHTTCSEE-EEETTSC-C-----------SCSSCCCCGGGC--SSCEEEEESSHH---------HHHHHHHTTCS----
T ss_pred HHHCCCCEE-eeeCCCC-h-----------HHHHHHHHHhCC--CceEEeecCCHH---------HHHHHHHcCCC----
Confidence 999999999 3443222 1 233444444332 244555543210 00001111111
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcC--CcEE-EEeccCCC--CCCCCCCHHHHHHHHhhCCCcEE--EecCCCCHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLG--AGEI-LLNCIDCD--GQGKGFDMDLIKLISDAVSIPVI--ASSGAGAVE 535 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G--~~~i-i~tdi~~d--G~~~G~d~~li~~l~~~~~ipVI--asGGi~s~e 535 (578)
.+.++|| ...+ .+.+....+...+ ++.+ .+++.+.+ ++..+++++.++++++.+++|++ +.|||++.+
T Consensus 148 ---~I~v~G~-~~~g-~~~e~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~~a~GGI~~~e 222 (297)
T 2zbt_A 148 ---MIRTKGE-AGTG-NVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPA 222 (297)
T ss_dssp ---EEEECCC-SSSC-CTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHSSCSSCEEBCSSCCSHH
T ss_pred ---EEEEccc-ccCc-chHHHHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhcCCCcEEEeeCCCCCHH
Confidence 2445555 2222 3333332221110 0000 01222110 12356789999999998899998 999999999
Q ss_pred HHHHHHHhcCchHHhhhhhhccCC
Q 045794 536 HFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 536 Di~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
|+.++++ .||++|++||+++...
T Consensus 223 ~i~~~~~-aGadgvvvGsai~~~~ 245 (297)
T 2zbt_A 223 DAALMMH-LGMDGVFVGSGIFKSG 245 (297)
T ss_dssp HHHHHHH-TTCSEEEECGGGGGSS
T ss_pred HHHHHHH-cCCCEEEEchHHhCCC
Confidence 9999986 8999999999998643
|
| >1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-12 Score=124.98 Aligned_cols=109 Identities=13% Similarity=0.275 Sum_probs=89.8
Q ss_pred CCcEEEEEECCC------CCHHHHHHHHHHCCCeEEEeCCc----cCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHH
Q 045794 46 SDSVVTLLDYGA------GNVRSVRNAIRHLGFGIKDVQTP----EDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCA 115 (578)
Q Consensus 46 ~~~~I~vld~~~------g~~~~i~~~L~~~Gv~v~~v~~~----~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~ 115 (578)
.+++|+++++.+ ++..++.++|+++|+++..++.. +.+.++|+||+|| |++...+..+++.++.+.|++
T Consensus 30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~ad~I~lpG-G~~~~~~~~l~~~gl~~~l~~ 108 (229)
T 1fy2_A 30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGG-GNTFQLLKESRERGLLAPMAD 108 (229)
T ss_dssp TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHHCSEEEECC-SCHHHHHHHHHHTTCHHHHHH
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhcCCEEEECC-CcHHHHHHHHHHCChHHHHHH
Confidence 357799999986 68888999999999999888532 5578899999999 556677788888899999999
Q ss_pred HHhCCCCEEEEechHHHHhhhcccC--------CCcCCCcccCceeee
Q 045794 116 YIEKDRPFLGICLGLQLLFQSSEEN--------GPVNGLGLIPGVVGR 155 (578)
Q Consensus 116 ~~~~g~PIlGIClG~QlLa~a~~e~--------~~~~Glgl~~~~v~~ 155 (578)
++++++|++|+|+|+|+|+..+.+. +...|||++|+.+.+
T Consensus 109 ~~~~G~p~~G~sAG~~~l~~~~~~~~d~~~~~~~~~~gLgli~~~v~~ 156 (229)
T 1fy2_A 109 RVKRGALYIGWSAGANLACPTIRTTNDMPIVDPNGFDALDLFPLQINP 156 (229)
T ss_dssp HHHTTCEEEEETHHHHHTSSBSTTCCSCCCSCCSCSBCCCCSSSEEEC
T ss_pred HHHcCCEEEEECHHHHhhcccceecCCCCcccCCcCCcCCCCCceecC
Confidence 9999999999999999999976542 345678888877643
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.3e-11 Score=115.53 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=121.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.++++.++.+.+.|++.||+.+.+. .+.+.|+++++.+++|+++| |++++.+ .++.+++
T Consensus 19 ~~~~~~~~~~~~~G~~~i~l~~~~~---------~~~~~i~~i~~~~~~~l~vg~g~~~~~~-----------~i~~a~~ 78 (212)
T 2v82_A 19 DEALAHVGAVIDAGFDAVEIPLNSP---------QWEQSIPAIVDAYGDKALIGAGTVLKPE-----------QVDALAR 78 (212)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETTST---------THHHHHHHHHHHHTTTSEEEEECCCSHH-----------HHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHhCCCCeEEEeccccCHH-----------HHHHHHH
Confidence 4788999999999999999876653 23678888888888888887 5666654 4999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.|.+++. + ++++ +..+++|.. +++++ .
T Consensus 79 ~Gad~V~~~~~----~-----------~~~~-~~~~~~g~~-~~~g~--~------------------------------ 109 (212)
T 2v82_A 79 MGCQLIVTPNI----H-----------SEVI-RRAVGYGMT-VCPGC--A------------------------------ 109 (212)
T ss_dssp TTCCEEECSSC----C-----------HHHH-HHHHHTTCE-EECEE--C------------------------------
T ss_pred cCCCEEEeCCC----C-----------HHHH-HHHHHcCCC-EEeec--C------------------------------
Confidence 99999987752 1 1334 455678743 33321 0
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCC--CcEEEecCCCCHHHHHHHHHh
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVS--IPVIASSGAGAVEHFSDVFRK 543 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~--ipVIasGGi~s~eDi~~l~~~ 543 (578)
++.+ +.++.+.|++.|.+..-. ...++.++++++.++ +||++.|||. .+++.++++
T Consensus 110 -------------t~~e-~~~a~~~G~d~v~v~~t~------~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~- 167 (212)
T 2v82_A 110 -------------TATE-AFTALEAGAQALKIFPSS------AFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWID- 167 (212)
T ss_dssp -------------SHHH-HHHHHHTTCSEEEETTHH------HHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHH-
T ss_pred -------------CHHH-HHHHHHCCCCEEEEecCC------CCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHH-
Confidence 2344 456678999999874311 235789999988876 9999999997 899999986
Q ss_pred cCchHHhhhhhhccC
Q 045794 544 TNASAALAAGIFHRK 558 (578)
Q Consensus 544 ~G~~gv~vgsa~~~~ 558 (578)
.|++++++||++...
T Consensus 168 ~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 168 AGCAGAGLGSDLYRA 182 (212)
T ss_dssp HTCSEEEECTTTCCT
T ss_pred cCCCEEEEChHHhCC
Confidence 899999999999876
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-10 Score=110.96 Aligned_cols=167 Identities=19% Similarity=0.278 Sum_probs=120.3
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCC---chhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGD---LPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~---~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
+++.++.+.+.|++.||+.+.+... ... ....+.++++++..++|+.+- ++ ++.+.+
T Consensus 33 ~~~~~~~~~~~G~~~i~l~~~~~~~---~~~~~~~~~~~~l~~~~~~~~v~v~v~------~~-----------~~~a~~ 92 (227)
T 2tps_A 33 PVTVVQKALKGGATLYQFREKGGDA---LTGEARIKFAEKAQAACREAGVPFIVN------DD-----------VELALN 92 (227)
T ss_dssp HHHHHHHHHHHTCSEEEECCCSTTC---CCHHHHHHHHHHHHHHHHHHTCCEEEE------SC-----------HHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCH---hHHHHHHHHHHHHHHHHHHcCCeEEEc------CH-----------HHHHHH
Confidence 8899999999999999998776531 111 123444555555567888873 23 778889
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|++.|.++.... + +.++.+.+|. +++.+++.
T Consensus 93 ~gad~v~l~~~~~---------------~-~~~~~~~~g~--~~~~~s~~------------------------------ 124 (227)
T 2tps_A 93 LKADGIHIGQEDA---------------N-AKEVRAAIGD--MILGVSAH------------------------------ 124 (227)
T ss_dssp HTCSEEEECTTSS---------------C-HHHHHHHHTT--SEEEEEEC------------------------------
T ss_pred cCCCEEEECCCcc---------------C-HHHHHHhcCC--cEEEEecC------------------------------
Confidence 9999999976432 1 4566666774 44544321
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe----ccCCCCCCCCCCHHHHHHHHhhCC-CcEEEecCCCCHHHHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLN----CIDCDGQGKGFDMDLIKLISDAVS-IPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t----di~~dG~~~G~d~~li~~l~~~~~-ipVIasGGi~s~eDi~~l 540 (578)
++.+ ++++.+.|++.+++. ..++.|+....+++.++++++.++ +||+++|||. ++++.++
T Consensus 125 -------------t~~e-~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~ 189 (227)
T 2tps_A 125 -------------TMSE-VKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPV 189 (227)
T ss_dssp -------------SHHH-HHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHH
T ss_pred -------------CHHH-HHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHH
Confidence 2344 566778899999963 233333334458899999998887 9999999998 9999999
Q ss_pred HHhcCchHHhhhhhhccCC
Q 045794 541 FRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~ 559 (578)
.+ .|++||.+||++....
T Consensus 190 ~~-~Ga~gv~vgs~i~~~~ 207 (227)
T 2tps_A 190 IQ-AGADGVSMISAISQAE 207 (227)
T ss_dssp HH-TTCSEEEESHHHHTSS
T ss_pred HH-cCCCEEEEhHHhhcCC
Confidence 85 8999999999998653
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.4e-12 Score=125.59 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=74.6
Q ss_pred EEecCCHHHHH--HHHHHcCCC-eEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChH
Q 045794 303 VRNLGKPVELA--RQYYKEGAD-EISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSL 377 (578)
Q Consensus 303 ~~~~~~p~~~a--~~~~~~g~~-~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~ 377 (578)
.+..++| ++| +.|...|++ .+|++|||+.. +..+.++|+++++.+ ++|+++|||||+.||
T Consensus 177 ~~~~~~~-e~A~~~aYa~~gad~G~~lV~LD~~~-----~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Ed--------- 241 (286)
T 3vk5_A 177 TVPVSTA-STEEIDRYLHVARAFGFHMVYLYSRN-----EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQ--------- 241 (286)
T ss_dssp BCCCCCS-SSHHHHHHHHHHHHTTCSEEEEECSS-----SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHH---------
T ss_pred CCCCCCH-HHHHHHHHHHHHHHcCCCEEEEcCCC-----CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHH---------
Confidence 3445677 888 888887764 25677777642 355789999999999 899999999999976
Q ss_pred HHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCC
Q 045794 378 EVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG 424 (578)
Q Consensus 378 ~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (578)
+++++++|||+|++||++++++ + |+++++++++|+
T Consensus 242 --a~~ll~aGAD~VVVGSAav~d~--~--------Pelv~e~a~~~~ 276 (286)
T 3vk5_A 242 --VTEYLDSGADYVGFAGALEQPD--W--------RSALAEIAGRRP 276 (286)
T ss_dssp --HHHHHHTTCSEEEESGGGSSTT--H--------HHHHHHHHC---
T ss_pred --HHHHHHcCCCEEEECchhhcCC--C--------HHHHHHHHHhCC
Confidence 9999999999999999999851 1 478899998884
|
| >3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.8e-11 Score=114.92 Aligned_cols=107 Identities=14% Similarity=0.200 Sum_probs=87.1
Q ss_pred CcEEEEEECCCC------CHHHHHHHHHHCCCeEEEeC----Cc----cCCCCCCEEEECCCCCchHHHHHHHhhcHHHH
Q 045794 47 DSVVTLLDYGAG------NVRSVRNAIRHLGFGIKDVQ----TP----EDILNANRLIFPGVGAFAAAMDVLNKTGMAEA 112 (578)
Q Consensus 47 ~~~I~vld~~~g------~~~~i~~~L~~~Gv~v~~v~----~~----~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~ 112 (578)
.++|+++++.++ +..++.++|+++|+++..++ .+ +.+.++|+|++||| ++...+..+++.++.+.
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG-~~~~l~~~L~~~gl~~~ 105 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGG-NTFFLLQELKRTGADKL 105 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCS-CHHHHHHHHHHHTHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCC-CHHHHHHHHHHCChHHH
Confidence 467999997755 77889999999999998884 44 33788999999995 45567788888899999
Q ss_pred HHHHHhCCCCEEEEechHHHHhhhcc--c----------CCCcCCCcccCceee
Q 045794 113 LCAYIEKDRPFLGICLGLQLLFQSSE--E----------NGPVNGLGLIPGVVG 154 (578)
Q Consensus 113 i~~~~~~g~PIlGIClG~QlLa~a~~--e----------~~~~~Glgl~~~~v~ 154 (578)
|++++++|+|++|||.|+|+|+..+. + .....|||++|..+.
T Consensus 106 l~~~~~~G~p~~G~sAGa~~l~~~i~~~~~~~~~~~~~~~~~~~GLGlv~~~i~ 159 (206)
T 3l4e_A 106 ILEEIAAGKLYIGESAGAVITSPNIAYIQTMDSTKKAVNLTNYDALNLVDFSTL 159 (206)
T ss_dssp HHHHHHTTCEEEEETHHHHTTSSBCGGGTTTSCGGGCSSCCCCBCCCCSSSEEE
T ss_pred HHHHHHcCCeEEEECHHHHHhcccceeccCCCCccccCCCCcCCcccCCCCEeE
Confidence 99999999999999999999998642 1 124578888888764
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=6.6e-10 Score=107.60 Aligned_cols=169 Identities=17% Similarity=0.171 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
++.+.++.+.+.|++.|++.+.+.... ......+.++++....++++.+- ++ ++.+.++|
T Consensus 27 ~~~~~~~~~~~~G~~~i~l~~~~~~~~---~~~~~~~~l~~~~~~~~v~v~v~------~~-----------~~~a~~~g 86 (215)
T 1xi3_A 27 PEVESVREALEGGATAIQMRIKNAPTR---EMYEIGKTLRQLTREYDALFFVD------DR-----------VDVALAVD 86 (215)
T ss_dssp CHHHHHHHHHHTTCSEEEECCCSCCHH---HHHHHHHHHHHHHHHTTCEEEEE------SC-----------HHHHHHHT
T ss_pred hHHHHHHHHHHCCCCEEEECCCCCCHH---HHHHHHHHHHHHHHHcCCeEEEc------Ch-----------HHHHHHcC
Confidence 788999999999999999886543210 00122333444444557788772 33 77888999
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
++.|.++..... ++.++++ + .. +++++++.
T Consensus 87 ad~v~l~~~~~~-------------~~~~~~~---~-~~-~~~~v~~~-------------------------------- 116 (215)
T 1xi3_A 87 ADGVQLGPEDMP-------------IEVAKEI---A-PN-LIIGASVY-------------------------------- 116 (215)
T ss_dssp CSEEEECTTSCC-------------HHHHHHH---C-TT-SEEEEEES--------------------------------
T ss_pred CCEEEECCccCC-------------HHHHHHh---C-CC-CEEEEecC--------------------------------
Confidence 999999754332 1223333 2 12 33444321
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC---CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ---GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~---~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
++.+ +.++.+.|++.+++..+...++ ....+++.++++++..++||+++|||. ++++.++.+ .
T Consensus 117 -----------t~~e-~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~-~ 182 (215)
T 1xi3_A 117 -----------SLEE-ALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLK-T 182 (215)
T ss_dssp -----------SHHH-HHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHT-T
T ss_pred -----------CHHH-HHHHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHH-c
Confidence 2344 4567788999999855322222 345689999999888899999999998 999999985 8
Q ss_pred CchHHhhhhhhccCCC
Q 045794 545 NASAALAAGIFHRKEV 560 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~ 560 (578)
|+++|++||++...+.
T Consensus 183 Ga~gv~vgs~i~~~~d 198 (215)
T 1xi3_A 183 GVDGIAVISAVMGAED 198 (215)
T ss_dssp TCSEEEESHHHHTSSS
T ss_pred CCCEEEEhHHHhCCCC
Confidence 9999999999987653
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-10 Score=115.13 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHcCCCeEEEE-----ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFL-----NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~-----Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
...|+|+.+++.||..+.++ |+... + ...|..+.+.|++|.+.+.+||..=--|..+ ..++.
T Consensus 19 ~~~eqa~iae~aGa~av~~l~~~p~d~r~~-g-Gv~Rm~dp~~I~~I~~aVsIPVm~k~righ~-----------~EAqi 85 (291)
T 3o07_A 19 VTPEQAKIAEKSGACAVMALESIPADMRKS-G-KVCRMSDPKMIKDIMNSVSIPVMAKVRIGHF-----------VEAQI 85 (291)
T ss_dssp SSHHHHHHHHHHTCSEEEECSSCHHHHHTT-T-CCCCCCCHHHHHHHHTTCSSCEEEEEETTCH-----------HHHHH
T ss_pred CCHHHHHHHHHhCchhhhhccCCCchhhhc-C-CccccCCHHHHHHHHHhCCCCeEEEEecCcH-----------HHHHH
Confidence 34599999999999999997 77643 3 3456788999999999999999854444444 45999
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHH-hCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR-VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
+.++|||.| =.|..++ +. +....+.+ .|+ +.+..|+++
T Consensus 86 lea~GaD~I-Desevlt-pa-----------d~~~~I~k~~f~---vpfv~~~~~------------------------- 124 (291)
T 3o07_A 86 IEALEVDYI-DESEVLT-PA-----------DWTHHIEKDKFK---VPFVCGAKD------------------------- 124 (291)
T ss_dssp HHHTTCSEE-EEETTSC-CS-----------CSSCCCCGGGCS---SCEEEEESS-------------------------
T ss_pred HHHcCCCEE-ecccCCC-HH-----------HHHHHhhhhcCC---CcEEeeCCC-------------------------
Confidence 999999966 3333222 21 11222222 342 222223322
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe--------------------------cc-CCCC-----CCCCC
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN--------------------------CI-DCDG-----QGKGF 509 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t--------------------------di-~~dG-----~~~G~ 509 (578)
++-+.+..+.|++.|=.| .. +.+. +..++
T Consensus 125 -------------------l~EAlrri~eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~a 185 (291)
T 3o07_A 125 -------------------LGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRV 185 (291)
T ss_dssp -------------------HHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTS
T ss_pred -------------------HHHHHHHHHCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCC
Confidence 333344445677766544 12 2111 12378
Q ss_pred CHHHHHHHHhhCCCcE--EEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 510 DMDLIKLISDAVSIPV--IASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 510 d~~li~~l~~~~~ipV--IasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
||++++++++..++|| |++|||.+++|+.++++ +||+||+||+++...+.+....+
T Consensus 186 d~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le-~GaDGVmVGrAI~~s~DP~~~Ak 243 (291)
T 3o07_A 186 PVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQ-LGCDGVFVGSGIFKSSNPVRLAT 243 (291)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHH-TTCSCEEECGGGGGSSCHHHHHH
T ss_pred CHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHH-hCCCEEEEchHHhCCCCHHHHHH
Confidence 9999999999999999 56999999999999995 99999999999987655443333
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.7e-10 Score=122.93 Aligned_cols=185 Identities=12% Similarity=0.160 Sum_probs=128.1
Q ss_pred ecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh-------hccccEEEeCCccccccCCCCccChH
Q 045794 305 NLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE-------NVFVPLTVGGGIRDFTDANGRHYSSL 377 (578)
Q Consensus 305 ~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~-------~~~~pi~~gGGir~~~d~~~~~~~~~ 377 (578)
...++.++++.+.+.+...+.++|-++..-|- -...++++.+.. ...+++.++.|... | ++
T Consensus 191 ~~~~l~eal~~m~~~~i~~lpVVDe~g~l~Gi---IT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~--d-------~~ 258 (511)
T 3usb_A 191 VGTTLSEAEKILQKYKIEKLPLVDNNGVLQGL---ITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTA--D-------AM 258 (511)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEECTTSBEEEE---EEHHHHHHHHHCTTCCBCTTSCBCCEEEECSST--T-------HH
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCCCCEeee---ccHHHHHHhhhcccchhhhccceeeeeeeeecc--c-------hH
Confidence 34678899999999999999999987632221 233455666543 11234444444332 1 35
Q ss_pred HHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCC
Q 045794 378 EVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGP 457 (578)
Q Consensus 378 ~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~ 457 (578)
+.++.++++|++.|+++++--. ...+ .++++++.+.|+...|++ -+
T Consensus 259 era~aLveaGvd~I~Id~a~g~-~~~v--------~~~i~~i~~~~~~~~vi~-g~------------------------ 304 (511)
T 3usb_A 259 TRIDALVKASVDAIVLDTAHGH-SQGV--------IDKVKEVRAKYPSLNIIA-GN------------------------ 304 (511)
T ss_dssp HHHHHHHHTTCSEEEEECSCTT-SHHH--------HHHHHHHHHHCTTSEEEE-EE------------------------
T ss_pred HHHHHHHhhccceEEecccccc-hhhh--------hhHHHHHHHhCCCceEEe-ee------------------------
Confidence 6799999999999999876322 1222 378999999997544443 11
Q ss_pred CCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC---------CCCCCCCCCHHHHHHHHh---hCCCcE
Q 045794 458 NGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID---------CDGQGKGFDMDLIKLISD---AVSIPV 525 (578)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~---------~dG~~~G~d~~li~~l~~---~~~ipV 525 (578)
+...+.++.+.+.|++.|.+ ++. .+| ...+++.++.++++ ..++||
T Consensus 305 --------------------v~t~e~a~~~~~aGad~i~v-g~g~gsi~~~~~~~g-~g~p~~~~l~~v~~~~~~~~iPV 362 (511)
T 3usb_A 305 --------------------VATAEATKALIEAGANVVKV-GIGPGSICTTRVVAG-VGVPQLTAVYDCATEARKHGIPV 362 (511)
T ss_dssp --------------------ECSHHHHHHHHHHTCSEEEE-CSSCSTTCCHHHHHC-CCCCHHHHHHHHHHHHHTTTCCE
T ss_pred --------------------eccHHHHHHHHHhCCCEEEE-CCCCccccccccccC-CCCCcHHHHHHHHHHHHhCCCcE
Confidence 12357789999999999986 221 122 22467777777643 457999
Q ss_pred EEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 526 IASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 526 IasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
|++|||++.+|+.+++. .||++|++|++|...
T Consensus 363 Ia~GGI~~~~di~kala-~GA~~V~vGs~~~~~ 394 (511)
T 3usb_A 363 IADGGIKYSGDMVKALA-AGAHVVMLGSMFAGV 394 (511)
T ss_dssp EEESCCCSHHHHHHHHH-TTCSEEEESTTTTTB
T ss_pred EEeCCCCCHHHHHHHHH-hCchhheecHHHhcC
Confidence 99999999999999996 999999999998543
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-10 Score=115.93 Aligned_cols=114 Identities=13% Similarity=0.141 Sum_probs=97.3
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEE-EcccccCC---CCCHHHHHHHHHHcCCcEEEEeccCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCT-VNGGREGR---PIGAYELAKAVEDLGAGEILLNCIDC 502 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~---~~~~~e~~~~~~~~G~~~ii~tdi~~ 502 (578)
+|+.+||+++++ -|+ .+||.+.. ..++.++++.+++.|++.|.+++.+.
T Consensus 2 ~iip~id~~~g~---------------------------~vk~~~G~~~~~~~~~~~~~~~a~~~~~~Gad~i~v~d~~~ 54 (241)
T 1qo2_A 2 LVVPAIDLFRGK---------------------------VARMIKGRKENTIFYEKDPVELVEKLIEEGFTLIHVVDLSN 54 (241)
T ss_dssp EEEEEEEEETTE---------------------------EEEEGGGCGGGEEEESSCHHHHHHHHHHTTCCCEEEEEHHH
T ss_pred EEEEEEEeeCCE---------------------------EEEEeccccccceecCcCHHHHHHHHHHcCCCEEEEecccc
Confidence 589999998762 222 56787765 46899999999999999999999988
Q ss_pred CCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 503 DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 503 dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
++...+.+++.+++++ .+++||+++||+.+.+++.++++ .||++|++|+++...+..+.++ +.+.
T Consensus 55 ~~~~~~~~~~~i~~i~-~~~ipvi~~Ggi~~~~~~~~~~~-~Gad~V~lg~~~l~~p~~~~~~-~~~g 119 (241)
T 1qo2_A 55 AIENSGENLPVLEKLS-EFAEHIQIGGGIRSLDYAEKLRK-LGYRRQIVSSKVLEDPSFLKSL-REID 119 (241)
T ss_dssp HHHCCCTTHHHHHHGG-GGGGGEEEESSCCSHHHHHHHHH-TTCCEEEECHHHHHCTTHHHHH-HTTT
T ss_pred cccCCchhHHHHHHHH-hcCCcEEEECCCCCHHHHHHHHH-CCCCEEEECchHhhChHHHHHH-HHcC
Confidence 8888899999999999 78999999999999999999986 8999999999998877656666 4443
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=99.03 E-value=4.9e-09 Score=103.99 Aligned_cols=188 Identities=21% Similarity=0.180 Sum_probs=138.5
Q ss_pred EEecCCHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 303 VRNLGKPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 303 ~~~~~~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+..-+|.++|+.|.+. |.-|-++ |=.-+.+ .++.|+++++.+++||. | .| ||+++++ +.
T Consensus 57 i~~~~~~~~iA~~y~~~-A~~IsVlTd~~~F~g-------s~~dL~~ir~~v~lPvL-----r--KD---fi~~~~q-i~ 117 (251)
T 1i4n_A 57 INADASLEDFIRMYDEL-ADAISILTEKHYFKG-------DPAFVRAARNLTCRPIL-----A--KD---FYIDTVQ-VK 117 (251)
T ss_dssp SCTTCCHHHHHHHHHHH-CSEEEEECCCSSSCC-------CTHHHHHHHTTCCSCEE-----E--EC---CCCSTHH-HH
T ss_pred cCCCCCHHHHHHHHHHh-CCceEEEecccccCC-------CHHHHHHHHHhCCCCEE-----E--ee---CCCCHHH-HH
Confidence 34445999999999998 9988874 6555422 24667888888999996 2 23 8999996 55
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
++..+|||.|.+..+.+.+ ..+ .++++ .++.+|-+ +++.+. +
T Consensus 118 ea~~~GAD~ilLi~a~l~~-~~l--------~~l~~-~a~~lGl~-~lvEv~--~------------------------- 159 (251)
T 1i4n_A 118 LASSVGADAILIIARILTA-EQI--------KEIYE-AAEELGMD-SLVEVH--S------------------------- 159 (251)
T ss_dssp HHHHTTCSEEEEEGGGSCH-HHH--------HHHHH-HHHTTTCE-EEEEEC--S-------------------------
T ss_pred HHHHcCCCEEEEecccCCH-HHH--------HHHHH-HHHHcCCe-EEEEeC--C-------------------------
Confidence 6999999999997777663 222 13443 34557733 343221 1
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHc-CCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHH
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDL-GAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~-G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~ 538 (578)
.+-++++.++ |++-|-++..+-.+ .++|++...++.+.. ++++|+.|||.+++|++
T Consensus 160 -------------------~eE~~~A~~l~g~~iIGinnr~l~t--~~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~ 218 (251)
T 1i4n_A 160 -------------------REDLEKVFSVIRPKIIGINTRDLDT--FEIKKNVLWELLPLVPDDTVVVAESGIKDPRELK 218 (251)
T ss_dssp -------------------HHHHHHHHTTCCCSEEEEECBCTTT--CCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHH
T ss_pred -------------------HHHHHHHHhcCCCCEEEEeCccccc--CCCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHH
Confidence 3446778888 99988888866533 477898888888776 57999999999999999
Q ss_pred HHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
++.+ . ++||+||+++...+..-..+++.+.
T Consensus 219 ~~~~-~-a~avLVG~aimr~~d~~~~~~~l~~ 248 (251)
T 1i4n_A 219 DLRG-K-VNAVLVGTSIMKAENPRRFLEEMRA 248 (251)
T ss_dssp HHTT-T-CSEEEECHHHHHCSSHHHHHHHHHH
T ss_pred HHHH-h-CCEEEEcHHHcCCcCHHHHHHHHHh
Confidence 9985 8 9999999999987776666666554
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-09 Score=114.07 Aligned_cols=91 Identities=7% Similarity=0.138 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCC--------CCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKG--------FDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAA 549 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G--------~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv 549 (578)
+..++++.+++.|++.|++++.++.+.++| .++++++++++.+ ++|||++|||.+.+|+.++++ |||+|
T Consensus 145 ~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~--GaD~V 222 (350)
T 3b0p_A 145 GLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK--RVDGV 222 (350)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT--TSSEE
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh--CCCEE
Confidence 467899999999999999999876543333 4899999999998 999999999999999999984 89999
Q ss_pred hhhhhhccCCCCHHHHHHHHHh
Q 045794 550 LAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 550 ~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
++|+++..+++.+.++++.+..
T Consensus 223 ~iGRa~l~~P~l~~~i~~~l~~ 244 (350)
T 3b0p_A 223 MLGRAVYEDPFVLEEADRRVFG 244 (350)
T ss_dssp EECHHHHHCGGGGTTHHHHTTC
T ss_pred EECHHHHhCcHHHHHHHHHhcC
Confidence 9999999999999888877753
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.6e-10 Score=111.46 Aligned_cols=98 Identities=14% Similarity=0.165 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 478 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 478 ~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
-+|++.++.+.+.|++++.+.|++..-.....++++++++++.+.+|+.++|||++.++++++++ .|++.|+++|++..
T Consensus 31 ~dP~~~a~~~~~~gad~lhvvDld~a~~~~~~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~-~GadkVii~t~a~~ 109 (243)
T 4gj1_A 31 YNPLKKFKEYEKAGAKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLD-CGVKRVVIGSMAIK 109 (243)
T ss_dssp CCHHHHHHHHHHHTCCEEEEEEHHHHHCGGGCCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHH-TTCSEEEECTTTTT
T ss_pred CCHHHHHHHHHHCCCCEEEEEecCcccccchhHHHHHHHHHHhcCCCeEeccccccHHHHHHHHH-cCCCEEEEcccccc
Confidence 37999999999999999999999876556678999999999999999999999999999999996 99999999999998
Q ss_pred CCCCHHHHHHHHHhCCCee
Q 045794 558 KEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 558 ~~~~~~~~~~~l~~~~i~v 576 (578)
++--+.++.+.+.++.|.+
T Consensus 110 ~p~li~e~~~~~g~q~iv~ 128 (243)
T 4gj1_A 110 DATLCLEILKEFGSEAIVL 128 (243)
T ss_dssp CHHHHHHHHHHHCTTTEEE
T ss_pred CCchHHHHHhcccCceEEE
Confidence 8877888888888876654
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.4e-10 Score=124.78 Aligned_cols=187 Identities=17% Similarity=0.167 Sum_probs=120.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh-----hccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE-----NVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~-----~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+..++++.+.+.+...+.++|-++..-|-... -++++.... .....+.+|.++...+| +++.++
T Consensus 168 ~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~---~DIl~~~~~p~a~~d~~grL~v~aavG~~~d-------~~~~a~ 237 (496)
T 4fxs_A 168 ATGAEVQEKMHKARVEKILVVNDEFQLKGMITA---KDFHKAESKPNACKDEQGRLRVGAAVGAAPG-------NEERVK 237 (496)
T ss_dssp ----CGGGTCC---CCCEEEECTTSBCCEEECC---C-----CCCTTCCBCTTSCBCCEEECCSSSC-------CHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehH---hHHHHhhcccchhhhcccceeeeeeeccccc-------hHHHHH
Confidence 456677788888899999999976532221111 122222211 11224445545544333 367799
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
.++++|+|.|+|+++.-. .+.+ .+.++++.+.|+...|++ +
T Consensus 238 ~l~~aG~d~I~id~a~g~-~~~~--------~~~i~~ir~~~p~~~Vi~------g------------------------ 278 (496)
T 4fxs_A 238 ALVEAGVDVLLIDSSHGH-SEGV--------LQRIRETRAAYPHLEIIG------G------------------------ 278 (496)
T ss_dssp HHHHTTCSEEEEECSCTT-SHHH--------HHHHHHHHHHCTTCCEEE------E------------------------
T ss_pred HHHhccCceEEecccccc-chHH--------HHHHHHHHHHCCCceEEE------c------------------------
Confidence 999999999999987543 2222 378999999996433333 1
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEE------eccCCCCCCC-CCCHHHHHHHHhh---CCCcEEEecCC
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILL------NCIDCDGQGK-GFDMDLIKLISDA---VSIPVIASSGA 531 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~------tdi~~dG~~~-G~d~~li~~l~~~---~~ipVIasGGi 531 (578)
++...+.++.+.+.|++.|.+ +..++..+.. .+++.++.++++. .++|||++|||
T Consensus 279 ---------------~v~t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI 343 (496)
T 4fxs_A 279 ---------------NVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGI 343 (496)
T ss_dssp ---------------EECSHHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCC
T ss_pred ---------------ccCcHHHHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCC
Confidence 112257889999999999986 2233322223 3688888888764 37999999999
Q ss_pred CCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 532 GAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 532 ~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
++.+|+.+++. .||++|++|++|...
T Consensus 344 ~~~~di~kala-~GAd~V~iGs~f~~t 369 (496)
T 4fxs_A 344 RFSGDISKAIA-AGASCVMVGSMFAGT 369 (496)
T ss_dssp CSHHHHHHHHH-TTCSEEEESTTTTTB
T ss_pred CCHHHHHHHHH-cCCCeEEecHHHhcC
Confidence 99999999996 899999999998653
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.6e-10 Score=121.78 Aligned_cols=182 Identities=15% Similarity=0.200 Sum_probs=99.9
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHh---------hhccccEEEeCCccccccCCCCccChH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTS---------ENVFVPLTVGGGIRDFTDANGRHYSSL 377 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~---------~~~~~pi~~gGGir~~~d~~~~~~~~~ 377 (578)
.+..++.+.+.+.+...+.|+|-++..-|-... -++++.+. ....+.+.+|.+..+ +
T Consensus 166 ~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~---~Dil~~~~~p~a~kd~~grl~v~aavG~~~~~-----------~ 231 (490)
T 4avf_A 166 TPLEEMKAKLYENRIEKMLVVDENFYLRGLVTF---RDIEKAKTYPLASKDEQGRLRVGAAVGTGADT-----------G 231 (490)
T ss_dssp --------------------------------------------CTTCCBCTTSCBCCEEEECSSTTH-----------H
T ss_pred CcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeh---HHhhhhccCcchhhhccCcceeeeeeccccch-----------H
Confidence 355677888888899999999965532221111 12222221 112233444444444 4
Q ss_pred HHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCC
Q 045794 378 EVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGP 457 (578)
Q Consensus 378 ~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~ 457 (578)
+.++.++++|+|.|+++++.-. .+.+ .+.++++.+.|+.-.|++ -+
T Consensus 232 ~~a~~l~~aG~d~I~id~a~g~-~~~~--------~~~v~~i~~~~p~~~Vi~-g~------------------------ 277 (490)
T 4avf_A 232 ERVAALVAAGVDVVVVDTAHGH-SKGV--------IERVRWVKQTFPDVQVIG-GN------------------------ 277 (490)
T ss_dssp HHHHHHHHTTCSEEEEECSCCS-BHHH--------HHHHHHHHHHCTTSEEEE-EE------------------------
T ss_pred HHHHHHhhcccceEEecccCCc-chhH--------HHHHHHHHHHCCCceEEE-ee------------------------
Confidence 5699999999999999887654 2222 378999999995333333 11
Q ss_pred CCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEE------eccCCCCCCC-CCCHHHHHHHHhhC---CCcEEE
Q 045794 458 NGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILL------NCIDCDGQGK-GFDMDLIKLISDAV---SIPVIA 527 (578)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~------tdi~~dG~~~-G~d~~li~~l~~~~---~ipVIa 527 (578)
+...+.++.+.+.|++.|.+ +..++..... .++++++.++++.+ ++|||+
T Consensus 278 --------------------v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa 337 (490)
T 4avf_A 278 --------------------IATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIA 337 (490)
T ss_dssp --------------------ECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEE
T ss_pred --------------------eCcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEE
Confidence 12257889999999999997 2222221222 36888888887743 799999
Q ss_pred ecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 528 SSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 528 sGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+|||++.+|+.+++. .||++|++|++|..
T Consensus 338 ~GGI~~~~di~kal~-~GAd~V~vGs~~~~ 366 (490)
T 4avf_A 338 DGGIRFSGDLAKAMV-AGAYCVMMGSMFAG 366 (490)
T ss_dssp ESCCCSHHHHHHHHH-HTCSEEEECTTTTT
T ss_pred eCCCCCHHHHHHHHH-cCCCeeeecHHHhc
Confidence 999999999999996 89999999999865
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-09 Score=111.76 Aligned_cols=172 Identities=19% Similarity=0.183 Sum_probs=120.2
Q ss_pred HHHHHHHHHcC-CCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 310 VELARQYYKEG-ADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 310 ~~~a~~~~~~g-~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
.++|....+.| +..+| -+++ .....+.|+++.+...+|+.+..|+++. +.++.++++|+
T Consensus 59 ~~lA~avA~~GGlgii~-~~~s--------~e~~~~~I~~vk~~~~~pvga~ig~~~~-----------e~a~~l~eaGa 118 (361)
T 3khj_A 59 HLMAVGMARLGGIGIIH-KNMD--------MESQVNEVLKVKNSGGLRVGAAIGVNEI-----------ERAKLLVEAGV 118 (361)
T ss_dssp HHHHHHHHHTTCEEEEC-SSSC--------HHHHHHHHHHHHHTTCCCCEEEECTTCH-----------HHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCeEEe-cCCC--------HHHHHHHHHHHHhccCceEEEEeCCCHH-----------HHHHHHHHcCc
Confidence 37887776654 44443 1221 1334567888877777899999888763 46999999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCT 468 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (578)
|.|+|++..-. +..+ .+.++++.+.|+ -.|++.
T Consensus 119 d~I~ld~a~G~-~~~~--------~~~i~~i~~~~~-~~Vivg------------------------------------- 151 (361)
T 3khj_A 119 DVIVLDSAHGH-SLNI--------IRTLKEIKSKMN-IDVIVG------------------------------------- 151 (361)
T ss_dssp SEEEECCSCCS-BHHH--------HHHHHHHHHHCC-CEEEEE-------------------------------------
T ss_pred CeEEEeCCCCC-cHHH--------HHHHHHHHHhcC-CcEEEc-------------------------------------
Confidence 99999876533 2222 267888888884 334430
Q ss_pred EcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCC-CCCHHHHHHHHh---hCCCcEEEecCCCCHHHHH
Q 045794 469 VNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGK-GFDMDLIKLISD---AVSIPVIASSGAGAVEHFS 538 (578)
Q Consensus 469 ~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~-G~d~~li~~l~~---~~~ipVIasGGi~s~eDi~ 538 (578)
++...+.++.+.+.|++.|.+. ..++.-+.. .++++.+.++++ .+++|||++|||.+.+|+.
T Consensus 152 --------~v~t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~ 223 (361)
T 3khj_A 152 --------NVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIG 223 (361)
T ss_dssp --------EECSHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHH
T ss_pred --------cCCCHHHHHHHHHcCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHH
Confidence 0112577899999999999982 111111122 367787877744 3589999999999999999
Q ss_pred HHHHhcCchHHhhhhhhcc
Q 045794 539 DVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~ 557 (578)
+++. .||++|++||+|..
T Consensus 224 kala-~GAd~V~vGs~~~~ 241 (361)
T 3khj_A 224 KALA-VGASSVMIGSILAG 241 (361)
T ss_dssp HHHH-HTCSEEEESTTTTT
T ss_pred HHHH-cCCCEEEEChhhhc
Confidence 9996 89999999998865
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=3.8e-09 Score=109.04 Aligned_cols=90 Identities=13% Similarity=0.170 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCC-CCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKG-FDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G-~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+..++++.+++.|++.|.++..++.+.+.| .++++++++++ ++|||++|||.+.+|+.++++..||++|++|+++..
T Consensus 141 ~~~~~a~~l~~~G~d~i~v~g~~~~~~~~~~~~~~~i~~i~~--~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~ 218 (318)
T 1vhn_A 141 EVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIG 218 (318)
T ss_dssp CHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTT
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCccccCCCCcCHHHHHHHHc--CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHh
Confidence 456999999999999999999888776666 48888888877 899999999999999999997689999999999999
Q ss_pred CCCCHHHHHHHHH
Q 045794 558 KEVPIQSVKEHLY 570 (578)
Q Consensus 558 ~~~~~~~~~~~l~ 570 (578)
+++.+.++++.+.
T Consensus 219 ~P~l~~~~~~~~~ 231 (318)
T 1vhn_A 219 RPWIFKQIKDFLR 231 (318)
T ss_dssp CTTHHHHHHHHHH
T ss_pred CcchHHHHHHHHh
Confidence 9999999988776
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-09 Score=108.15 Aligned_cols=119 Identities=17% Similarity=0.249 Sum_probs=98.5
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
.+|+.+||++++++.+ .. + ..+|. . ..++.++++.+++.|++.|.++|.+.+++
T Consensus 5 ~~iip~id~~~g~~v~----------~~------------~--~~~~~-~-~~d~~~~a~~~~~~Gad~i~v~d~~~~~~ 58 (252)
T 1ka9_F 5 KRIVPCLDVHAGRVVK----------GV------------N--FVNLR-D-AGDPVEAARAYDEAGADELVFLDISATHE 58 (252)
T ss_dssp BEEEEEEEEETTEETT----------CC------------C--SSCCS-S-TTCHHHHHHHHHHHTCSCEEEEECCSSTT
T ss_pred ceEEEEEEEECCEEEE----------ee------------c--ccCce-e-cCCHHHHHHHHHHcCCCEEEEEcCCcccc
Confidence 4899999999875431 10 1 24454 2 34899999999999999999999998888
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
..+.+++.++++++.+++||++.|||.+.+++.++++ .||++|++|+++...+..+.++.+.+..
T Consensus 59 ~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~-~Gad~V~lg~~~l~~p~~~~~~~~~~~~ 123 (252)
T 1ka9_F 59 ERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLL-SGADKVSVNSAAVRRPELIRELADHFGA 123 (252)
T ss_dssp CHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH-HTCSEEEECHHHHHCTHHHHHHHHHHCG
T ss_pred CccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHH-cCCCEEEEChHHHhCcHHHHHHHHHcCC
Confidence 7788899999999999999999999999999999996 8999999999998877666666666643
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=98.89 E-value=3.3e-08 Score=99.43 Aligned_cols=187 Identities=15% Similarity=0.160 Sum_probs=122.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccC---CCCCCCC-------------chhHHHHHHHhhh-ccccEEEeCCccccccCC
Q 045794 308 KPVELARQYYKEGADEISFLNITGF---RDFPLGD-------------LPMLQVLRLTSEN-VFVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~---~~~~~~~-------------~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~ 370 (578)
.-.+.++.+.+.|+|.|++ |+--. .+++.-+ ..-+++++++++. +.+|+.+=+-.+.
T Consensus 32 ~~~~~~~~l~~~GaD~iei-g~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~----- 105 (268)
T 1qop_A 32 QSLKIIDTLIDAGADALEL-GVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANL----- 105 (268)
T ss_dssp HHHHHHHHHHHTTCSSEEE-ECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHH-----
T ss_pred HHHHHHHHHHHCCCCEEEE-CCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccH-----
Confidence 3468899999999999996 55211 1211100 1124678999988 7899854111111
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCcccccee
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAV 450 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~ 450 (578)
.++|+..+.++.+.++|+|.+++.-...++. +.+.+..+++|-+ .+..+.
T Consensus 106 v~~~g~~~~~~~~~~aGadgii~~d~~~e~~------------~~~~~~~~~~g~~-~i~l~~----------------- 155 (268)
T 1qop_A 106 VFNNGIDAFYARCEQVGVDSVLVADVPVEES------------APFRQAALRHNIA-PIFICP----------------- 155 (268)
T ss_dssp HHTTCHHHHHHHHHHHTCCEEEETTCCGGGC------------HHHHHHHHHTTCE-EECEEC-----------------
T ss_pred HHHhhHHHHHHHHHHcCCCEEEEcCCCHHHH------------HHHHHHHHHcCCc-EEEEEC-----------------
Confidence 2567777889999999999888865554422 2334555667743 222221
Q ss_pred eeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC-CCCCCCCC---CHHHHHHHHhhCCCcEE
Q 045794 451 RVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID-CDGQGKGF---DMDLIKLISDAVSIPVI 526 (578)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~-~dG~~~G~---d~~li~~l~~~~~ipVI 526 (578)
..+..+.++.+.+.+.+.+.+..+. ..|...+. ..++++++++.+++||+
T Consensus 156 --------------------------p~t~~~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~ 209 (268)
T 1qop_A 156 --------------------------PNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPAL 209 (268)
T ss_dssp --------------------------TTCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEE
T ss_pred --------------------------CCCCHHHHHHHHhhCCCcEEEEecCCcCCCccCCCchHHHHHHHHHhccCCcEE
Confidence 1123455556666655555544433 23332232 47899999998899999
Q ss_pred EecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 527 asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
++|||++++++.+++. .|||+|+|||++.+
T Consensus 210 vggGI~t~e~~~~~~~-agAD~vVVGSai~~ 239 (268)
T 1qop_A 210 QGFGISSPEQVSAAVR-AGAAGAISGSAIVK 239 (268)
T ss_dssp EESSCCSHHHHHHHHH-TTCSEEEECHHHHH
T ss_pred EECCCCCHHHHHHHHH-cCCCEEEEChHHhh
Confidence 9999999999999765 89999999999964
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=98.86 E-value=3.6e-09 Score=105.23 Aligned_cols=119 Identities=13% Similarity=0.194 Sum_probs=96.0
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
.+|+.+||++++++. +.. + ..|.. ...++.++++.+++.|++.+.+++.+..+.
T Consensus 4 ~~iip~id~~~g~~v----------~~~------------~---~~~~~-~~~d~~~~a~~~~~~Gad~i~v~d~~~~~~ 57 (253)
T 1thf_D 4 KRIIACLDVKDGRVV----------KGS------------N---FENLR-DSGDPVELGKFYSEIGIDELVFLDITASVE 57 (253)
T ss_dssp CEEEEEEEEETTEEC----------CCS------------C---CTTSS-CTTCHHHHHHHHHHTTCCEEEEEESSCSSS
T ss_pred CeEEEEEEEECCEEE----------Eee------------c---cccee-eccCHHHHHHHHHHcCCCEEEEECCchhhc
Confidence 589999999987542 110 0 01333 234899999999999999999999887766
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
..+.+++.++++++.+++||++.|||.+++++.++++ .||++|++|++....+..+.++.+.+..
T Consensus 58 ~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~-~Gad~V~lg~~~l~~p~~~~~~~~~~g~ 122 (253)
T 1thf_D 58 KRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELIL-RGADKVSINTAAVENPSLITQIAQTFGS 122 (253)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH-TTCSEEEESHHHHHCTHHHHHHHHHHCG
T ss_pred CCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCCEEEEChHHHhChHHHHHHHHHcCC
Confidence 6667899999999999999999999999999999986 8999999999998877666676666653
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.7e-09 Score=108.41 Aligned_cols=208 Identities=14% Similarity=0.111 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHHcCCCeEEEE-----ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFL-----NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~-----Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
-+|.++|+.+.+.||..|.++ |.....+ ..+..+.+.|++|.+.+.+||..=--|..+ +.++
T Consensus 24 ~~~~e~A~~ae~aGA~aI~~l~~v~~d~~~~~G--~arm~~p~~i~~I~~av~iPV~~K~rig~~-----------~e~q 90 (330)
T 2yzr_A 24 VTNVEQAQIAEEAGAVAVMALERVPADIRAAGG--VARMSDPALIEEIMDAVSIPVMAKCRIGHT-----------TEAL 90 (330)
T ss_dssp ESSHHHHHHHHHHTCSEEEECSSCHHHHC--CC--CCCCCCHHHHHHHHHHCSSCEEEEEETTCH-----------HHHH
T ss_pred CCHHHHHHHHHHcCCCEEEecCCccccccCCcc--hhhcCCHHHHHHHHHhcCCCeEEEEeecch-----------HHHH
Confidence 367899999999999999775 6655422 235667899999999999999854333333 3488
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHH-HHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQI-SRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGE 460 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (578)
.+-++|||.|- -|..++ +.+.+ ..+ .++|+ .- +.-++++-. -.++--+.|.
T Consensus 91 ilea~GaD~Id-~s~~l~-p~d~~-----------~~i~k~~~~-~~--~~~~a~~lg---------ea~r~~~~Ga--- 142 (330)
T 2yzr_A 91 VLEAIGVDMID-ESEVLT-QADPF-----------FHIYKKKFN-VP--FVCGARNLG---------EAVRRIWEGA--- 142 (330)
T ss_dssp HHHHTTCSEEE-EETTSC-CSCSS-----------CCCCGGGCS-SC--EEEECSSHH---------HHHHHHHHTC---
T ss_pred HHHHcCCCEEe-hhccCC-HHHHH-----------HHhhhhhcc-cc--hhhccccHH---------HHHHHHhcCc---
Confidence 88889999884 444443 21110 000 12231 11 111111100 0000000000
Q ss_pred CcceEEEEEccc--cc------------------CCCCCHHHHHHHHHHcCCcEE---------------------EEec
Q 045794 461 EYAWYQCTVNGG--RE------------------GRPIGAYELAKAVEDLGAGEI---------------------LLNC 499 (578)
Q Consensus 461 ~~~~~~~~~~g~--~~------------------~~~~~~~e~~~~~~~~G~~~i---------------------i~td 499 (578)
=.+.++|- .. .+.-+..++.+.+.+.|++.+ +++.
T Consensus 143 ----~~i~t~ge~g~~~~ve~v~H~r~~~~~~~~~s~~~~~El~~~A~~~gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T 218 (330)
T 2yzr_A 143 ----AMIRTKGEAGTGNIVEAVRHMRLMNEAIAQLQRMTDEEVYGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEG 218 (330)
T ss_dssp ----SEEEECCCTTSCCTHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHGGGGHHHHHHHHHTTSCSCCCTTSEEETT
T ss_pred ----ceeeccCCCCcccchhHHHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCEeecccchhhhccccccccccccccCC
Confidence 03344441 00 000112222222444455541 1111
Q ss_pred cCCCCCCCCCCHHHHHHHHhhCCCcE--EEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCC
Q 045794 500 IDCDGQGKGFDMDLIKLISDAVSIPV--IASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 500 i~~dG~~~G~d~~li~~l~~~~~ipV--IasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~ 561 (578)
-+++.. ....+++++++++..++|| ++.|||.+++|+.++++ .||+||+||+++....-+
T Consensus 219 ~TK~~~-~~~~lell~~i~~~~~IPVV~VAeGGI~Tpeda~~~l~-~GaDgV~VGsaI~~a~dP 280 (330)
T 2yzr_A 219 FTLAEI-IDGLYEVLLEVKKLGRLPVVNFAAGGVATPADAALMMQ-LGSDGVFVGSGIFKSENP 280 (330)
T ss_dssp EEHHHH-HHHHHHHHHHHHHHTSCSSEEEECSCCCSHHHHHHHHH-TTCSCEEESHHHHTSSCH
T ss_pred CcccCC-CcchHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHH-cCcCEEeeHHHHhcCCCH
Confidence 111100 1124489999998889999 69999999999999996 799999999999755443
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=6.4e-09 Score=103.54 Aligned_cols=191 Identities=12% Similarity=0.133 Sum_probs=123.9
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEE--e---CCccccccCCCCccChHHHHHHH
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTV--G---GGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~--g---GGir~~~d~~~~~~~~~~~~~~~ 383 (578)
-.+.++...+.|.|.|+|= -++.... .....++++++++.+.+||.+ = |.+..+
T Consensus 55 ~~~~~~~~~~sGtDai~VG-S~~vt~~---~~~~~~~v~~ik~~~~lPvil~fPP~~g~~~~i----------------- 113 (286)
T 3vk5_A 55 AVEKAAELTRLGFAAVLLA-STDYESF---ESHMEPYVAAVKAATPLPVVLHFPPRPGAGFPV----------------- 113 (286)
T ss_dssp HHHHHHHHHHTTCSCEEEE-CSCCSSH---HHHHHHHHHHHHHHCSSCEEEECCCBTTTBSCC-----------------
T ss_pred HHHHHHHHHhcCCCEEEEc-cCCCCcc---hHHHHHHHHHHHHhCCCCEEEECCCCCCCcccc-----------------
Confidence 3347888888999999887 3333100 145678889988888999987 1 233332
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHH----H----HhCCCCeEEEEEeccccccCCCCccccceeeeccC
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQI----S----RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDL 455 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~----~----~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~ 455 (578)
..|||.+.+=|..=.+++.|+- -.++... . ++||.---...||++.++ +.|.
T Consensus 114 -~~~aDa~l~psvlNs~n~~~i~------g~~~~~~aa~~v~~~~~~~ge~ip~gYL~v~~g~---------k~V~---- 173 (286)
T 3vk5_A 114 -VRGADALLLPALLGSGDDYFVW------KSFLETLAAFPGRIPREEWPELLLTVALTFGEDP---------RTGD---- 173 (286)
T ss_dssp -CTTCSEEEEEEETTBSSHHHHT------HHHHHHHHHCSTTSCGGGCCEEEEEEEEECSCCH---------HHHH----
T ss_pred -ccCCCEEEEEEEecCCCccccc------CcHHHHHHhHHHHHHHHHhCCcceEEEEEECCCC---------ceee----
Confidence 2478888776655455566652 1111222 2 778822223556766541 0000
Q ss_pred CCCCCCcceEEEEEcccccCCCCCH---HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecC
Q 045794 456 GPNGEEYAWYQCTVNGGREGRPIGA---YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSG 530 (578)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~---~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGG 530 (578)
.-+.....+.++ ..++...+.+|. +++++|++. +..+.++++++++.+ ++||+++||
T Consensus 174 -------------fv~~~~~~~~e~A~~~aYa~~gad~G~-~lV~LD~~~----~~v~~e~V~~I~~~~~~~iPV~vGGG 235 (286)
T 3vk5_A 174 -------------LLGTVPVSTASTEEIDRYLHVARAFGF-HMVYLYSRN----EHVPPEVVRHFRKGLGPDQVLFVSGN 235 (286)
T ss_dssp -------------HHCBCCCCCSSSHHHHHHHHHHHHTTC-SEEEEECSS----SCCCHHHHHHHHHHSCTTCEEEEESS
T ss_pred -------------eeCCCCCCCHHHHHHHHHHHHHHHcCC-CEEEEcCCC----CcCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 001111112222 244444455554 688888754 678999999999999 899999999
Q ss_pred CCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 531 AGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 531 i~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
|++.+|++++++ .||++|++||++..+.
T Consensus 236 Irs~Eda~~ll~-aGAD~VVVGSAav~d~ 263 (286)
T 3vk5_A 236 VRSGRQVTEYLD-SGADYVGFAGALEQPD 263 (286)
T ss_dssp CCSHHHHHHHHH-TTCSEEEESGGGSSTT
T ss_pred CCCHHHHHHHHH-cCCCEEEECchhhcCC
Confidence 999999999996 8999999999999874
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-08 Score=101.00 Aligned_cols=186 Identities=13% Similarity=0.179 Sum_probs=122.4
Q ss_pred HHHHHHHHHHcCCCeEEEEec---ccCCCCCCCCc-------------hhHHHHHHHhhh-ccccEEEeCCccccccCCC
Q 045794 309 PVELARQYYKEGADEISFLNI---TGFRDFPLGDL-------------PMLQVLRLTSEN-VFVPLTVGGGIRDFTDANG 371 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl---~~~~~~~~~~~-------------~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~ 371 (578)
-.++++.+.+.|+|.|++ ++ |-..||+.-+. .-+++++++++. +.+|+.+=+-.+.+
T Consensus 34 ~~~~~~~l~~~GaD~iEl-giPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv----- 107 (267)
T 3vnd_A 34 SLKIIQTLVDNGADALEL-GFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLV----- 107 (267)
T ss_dssp HHHHHHHHHHTTCSSEEE-ECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHH-----
T ss_pred HHHHHHHHHHcCCCEEEE-CCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHH-----
Confidence 367889999999999885 32 11112221111 337888999887 78998654332221
Q ss_pred CccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceee
Q 045794 372 RHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVR 451 (578)
Q Consensus 372 ~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~ 451 (578)
++|+..+-++++.++|+|.+++.-...++. +.+.+.++++|-+.|.+ +-
T Consensus 108 ~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~------------~~~~~~~~~~gl~~i~l-ia------------------ 156 (267)
T 3vnd_A 108 FANGIDEFYTKAQAAGVDSVLIADVPVEES------------APFSKAAKAHGIAPIFI-AP------------------ 156 (267)
T ss_dssp HHHCHHHHHHHHHHHTCCEEEETTSCGGGC------------HHHHHHHHHTTCEEECE-EC------------------
T ss_pred HHhhHHHHHHHHHHcCCCEEEeCCCCHhhH------------HHHHHHHHHcCCeEEEE-EC------------------
Confidence 234444568899999999999976666532 34566778888543322 21
Q ss_pred eccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc-CCCCCCCCC--C-HHHHHHHHhhCCCcEEE
Q 045794 452 VTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI-DCDGQGKGF--D-MDLIKLISDAVSIPVIA 527 (578)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi-~~dG~~~G~--d-~~li~~l~~~~~ipVIa 527 (578)
..+..+.++.+.+.+-+.|.+.++ ...|..++. + .++++++++.+++||++
T Consensus 157 -------------------------P~t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~v 211 (267)
T 3vnd_A 157 -------------------------PNADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLL 211 (267)
T ss_dssp -------------------------TTCCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTTCCCEEE
T ss_pred -------------------------CCCCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEE
Confidence 123356777777776555555333 334555443 3 47899999988999999
Q ss_pred ecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 528 SSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 528 sGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+|||++++++++... .|+|||+|||++.+
T Consensus 212 GfGI~~~e~~~~~~~-~gADgvVVGSaiv~ 240 (267)
T 3vnd_A 212 GFGIAEPEQVRAAIK-AGAAGAISGSAVVK 240 (267)
T ss_dssp CSSCCSHHHHHHHHH-TTCSEEEECHHHHH
T ss_pred ECCcCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 999999999997664 89999999999864
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.5e-10 Score=110.28 Aligned_cols=78 Identities=23% Similarity=0.181 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHcCCCeE--EEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEI--SFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i--~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
.+| +.++.|.+.|.+++ |+++|++ . +. ..+.++|+++++.+ ++|+++|||||+.|+ ++++
T Consensus 146 ~~~-e~~~~~a~~g~~~l~~~~Vyl~~-~-G~---~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~-----------a~~~ 208 (234)
T 2f6u_A 146 IDK-ELAASYALVGEKLFNLPIIYIEY-S-GT---YGNPELVAEVKKVLDKARLFYGGGIDSREK-----------AREM 208 (234)
T ss_dssp CCH-HHHHHHHHHHHHTTCCSEEEEEC-T-TS---CCCHHHHHHHHHHCSSSEEEEESCCCSHHH-----------HHHH
T ss_pred CCH-HHHHHHHHhhhhhcCCCEEEEeC-C-CC---cchHHHHHHHHHhCCCCCEEEEecCCCHHH-----------HHHH
Confidence 478 99999999998777 8888887 3 22 45789999999999 999999999999976 9999
Q ss_pred HHcCcceeecchhhhccch
Q 045794 384 FRSGADKISIGSDAVYAAE 402 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~ 402 (578)
++ |||+||+||++++++.
T Consensus 209 ~~-gAd~VIVGSa~v~~~~ 226 (234)
T 2f6u_A 209 LR-YADTIIVGNVIYEKGI 226 (234)
T ss_dssp HH-HSSEEEECHHHHHHCH
T ss_pred Hh-CCCEEEEChHHHhCHH
Confidence 99 9999999999999754
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-08 Score=109.68 Aligned_cols=186 Identities=16% Similarity=0.188 Sum_probs=127.2
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh-----hccccEEEeCCccccccCCCCccChHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE-----NVFVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~-----~~~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
..++.++++.+.+.+...+.++|-++..- +--...++++.+.+ ....++.+|+++....+ +++.+
T Consensus 169 ~~~l~~a~~~m~~~~~~~lpVVd~~g~lv---Givt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~-------~~~~a 238 (491)
T 1zfj_A 169 GTDLETAERILHEHRIEKLPLVDNSGRLS---GLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSD-------TFERA 238 (491)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECTTSBEE---EEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTT-------HHHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEE---EEEEHHHHHHHHhccccccCcCCcEEEEEeccCchh-------HHHHH
Confidence 45778899999999999999999764211 11233455565553 11234555555432111 34669
Q ss_pred HHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCC
Q 045794 381 SEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGE 460 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (578)
+.++++|+|.++++++. .+...+ ++.++++.+.++.- .++ .+
T Consensus 239 ~~l~~~G~d~ivi~~a~-g~~~~~--------~~~i~~l~~~~p~~-pvi-----~G----------------------- 280 (491)
T 1zfj_A 239 EALFEAGADAIVIDTAH-GHSAGV--------LRKIAEIRAHFPNR-TLI-----AG----------------------- 280 (491)
T ss_dssp HHHHHHTCSEEEECCSC-TTCHHH--------HHHHHHHHHHCSSS-CEE-----EE-----------------------
T ss_pred HHHHHcCCCeEEEeeec-CcchhH--------HHHHHHHHHHCCCC-cEe-----CC-----------------------
Confidence 99999999999998743 222222 37788888888422 222 11
Q ss_pred CcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe--------ccCCCCCCCCCCHHHHHHHHh---hCCCcEEEec
Q 045794 461 EYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN--------CIDCDGQGKGFDMDLIKLISD---AVSIPVIASS 529 (578)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t--------di~~dG~~~G~d~~li~~l~~---~~~ipVIasG 529 (578)
++...+.++.+.++|++.|.+- .+..+| ..+++++.++++.. ..++|||++|
T Consensus 281 ----------------~v~t~~~a~~~~~~Gad~I~vg~g~g~~~~tr~~~~-~~~p~~~~l~~~~~~~~~~~ipvia~G 343 (491)
T 1zfj_A 281 ----------------NIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAG-VGVPQVTAIYDAAAVAREYGKTIIADG 343 (491)
T ss_dssp ----------------EECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTC-CCCCHHHHHHHHHHHHHHTTCEEEEES
T ss_pred ----------------CccCHHHHHHHHHcCCCEEEECccCCcceEEeeecC-CCCCcHHHHHHHHHHHhhcCCCEEeeC
Confidence 1112478889999999999653 222223 24678888888865 4689999999
Q ss_pred CCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 530 GAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 530 Gi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
||++.+|+.+++. .||++|++|++|+.
T Consensus 344 Gi~~~~di~kal~-~GA~~v~vG~~~~~ 370 (491)
T 1zfj_A 344 GIKYSGDIVKALA-AGGNAVMLGSMFAG 370 (491)
T ss_dssp CCCSHHHHHHHHH-TTCSEEEESTTTTT
T ss_pred CCCCHHHHHHHHH-cCCcceeeCHHhhC
Confidence 9999999999996 99999999999974
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=98.05 Aligned_cols=154 Identities=15% Similarity=0.122 Sum_probs=107.6
Q ss_pred HHHHHHHhhh-ccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 343 LQVLRLTSEN-VFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 343 ~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
+++|+++++. .+.|+.++--+.+. ....++.+.++|||.|++........ ++.+.+..+
T Consensus 41 ~~~i~~ir~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~Gad~v~v~~~~~~~~-----------~~~~~~~~~ 100 (211)
T 3f4w_A 41 VNAIKAIKEKYPHKEVLADAKIMDG---------GHFESQLLFDAGADYVTVLGVTDVLT-----------IQSCIRAAK 100 (211)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSC---------HHHHHHHHHHTTCSEEEEETTSCHHH-----------HHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEEEeccc---------hHHHHHHHHhcCCCEEEEeCCCChhH-----------HHHHHHHHH
Confidence 4778888877 47888554333322 11238899999999999987654211 123345556
Q ss_pred hCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC
Q 045794 422 VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID 501 (578)
Q Consensus 422 ~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~ 501 (578)
++|. ++++ ++.. .-++.+.++.+.+.|++.|. ++..
T Consensus 101 ~~g~-~~~v--~~~~----------------------------------------~~t~~~~~~~~~~~g~d~i~-v~~g 136 (211)
T 3f4w_A 101 EAGK-QVVV--DMIC----------------------------------------VDDLPARVRLLEEAGADMLA-VHTG 136 (211)
T ss_dssp HHTC-EEEE--ECTT----------------------------------------CSSHHHHHHHHHHHTCCEEE-EECC
T ss_pred HcCC-eEEE--EecC----------------------------------------CCCHHHHHHHHHHcCCCEEE-EcCC
Confidence 6773 3443 2211 11467889999999999764 4454
Q ss_pred CCCCCCCC-CHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCH
Q 045794 502 CDGQGKGF-DMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPI 562 (578)
Q Consensus 502 ~dG~~~G~-d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~ 562 (578)
.+|...++ +++.++++++.+ ++|++++|||+ ++++.++.+ .|++++++||++...+.+.
T Consensus 137 ~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI~-~~~~~~~~~-~Gad~vvvGsai~~~~d~~ 197 (211)
T 3f4w_A 137 TDQQAAGRKPIDDLITMLKVRRKARIAVAGGIS-SQTVKDYAL-LGPDVVIVGSAITHAADPA 197 (211)
T ss_dssp HHHHHTTCCSHHHHHHHHHHCSSCEEEEESSCC-TTTHHHHHT-TCCSEEEECHHHHTCSSHH
T ss_pred CcccccCCCCHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHH-cCCCEEEECHHHcCCCCHH
Confidence 45544444 789999999886 89999999996 999999985 8999999999999776543
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-08 Score=105.09 Aligned_cols=174 Identities=18% Similarity=0.189 Sum_probs=115.2
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcce
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~ 390 (578)
++|....+.|- +-++..+- ......+.|+++.+...+++.++-|.+.. ..+.++.++++|++.
T Consensus 61 ~lA~avA~aGG--lg~i~~~~------s~e~~~~~i~~vk~~~~l~vga~vg~~~~---------~~~~~~~lieaGvd~ 123 (366)
T 4fo4_A 61 RLAIALAQEGG--IGFIHKNM------SIEQQAAQVHQVKISGGLRVGAAVGAAPG---------NEERVKALVEAGVDV 123 (366)
T ss_dssp HHHHHHHHTTC--EEEECSSS------CHHHHHHHHHHHHTTTSCCCEEECCSCTT---------CHHHHHHHHHTTCSE
T ss_pred HHHHHHHHcCC--ceEeecCC------CHHHHHHHHHHHHhcCceeEEEEeccChh---------HHHHHHHHHhCCCCE
Confidence 78877777654 33443221 11233556677665434555555444321 247799999999999
Q ss_pred eecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEc
Q 045794 391 ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVN 470 (578)
Q Consensus 391 vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (578)
|+|.|..-. ++.+ .+.++++.+.|+.-.|++. .
T Consensus 124 I~idta~G~-~~~~--------~~~I~~ik~~~p~v~Vi~G-~------------------------------------- 156 (366)
T 4fo4_A 124 LLIDSSHGH-SEGV--------LQRIRETRAAYPHLEIIGG-N------------------------------------- 156 (366)
T ss_dssp EEEECSCTT-SHHH--------HHHHHHHHHHCTTCEEEEE-E-------------------------------------
T ss_pred EEEeCCCCC-CHHH--------HHHHHHHHHhcCCCceEee-e-------------------------------------
Confidence 999765433 2223 2678888888853333331 1
Q ss_pred ccccCCCCCHHHHHHHHHHcCCcEEEEeccCC-------CCCCCC-CCHHHHHHHHh---hCCCcEEEecCCCCHHHHHH
Q 045794 471 GGREGRPIGAYELAKAVEDLGAGEILLNCIDC-------DGQGKG-FDMDLIKLISD---AVSIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 471 g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~-------dG~~~G-~d~~li~~l~~---~~~ipVIasGGi~s~eDi~~ 539 (578)
+...+.++++++.|++.|.+ .+.. ..+..| +.+.++.++++ .+++|||++|||.+.+|+.+
T Consensus 157 -------v~t~e~A~~a~~aGAD~I~v-G~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~k 228 (366)
T 4fo4_A 157 -------VATAEGARALIEAGVSAVKV-GIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISK 228 (366)
T ss_dssp -------ECSHHHHHHHHHHTCSEEEE-CSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHH
T ss_pred -------eCCHHHHHHHHHcCCCEEEE-ecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHH
Confidence 12257888999999999998 3221 111123 46777777764 46899999999999999999
Q ss_pred HHHhcCchHHhhhhhhcc
Q 045794 540 VFRKTNASAALAAGIFHR 557 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~ 557 (578)
++. .||++|++|++|..
T Consensus 229 ala-~GAd~V~vGs~f~~ 245 (366)
T 4fo4_A 229 AIA-AGASCVMVGSMFAG 245 (366)
T ss_dssp HHH-TTCSEEEESTTTTT
T ss_pred HHH-cCCCEEEEChHhhc
Confidence 996 89999999998854
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.1e-08 Score=102.81 Aligned_cols=90 Identities=22% Similarity=0.306 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHcCCcEEEEecc---------CC-------CCCCCCCC-----HHHHHHHHhhCCCcEEEecCCCCHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCI---------DC-------DGQGKGFD-----MDLIKLISDAVSIPVIASSGAGAVEHF 537 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi---------~~-------dG~~~G~d-----~~li~~l~~~~~ipVIasGGi~s~eDi 537 (578)
++.++++.+++.|++.|++++. ++ .|.+.|+. +++++++++.+++|||++|||.+.+|+
T Consensus 177 ~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GGI~~~~d~ 256 (311)
T 1ep3_A 177 DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDV 256 (311)
T ss_dssp CSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECCcCCHHHH
Confidence 4578999999999999999642 22 13345553 488899999889999999999999999
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
.++++ .||++|++|+++..++..+.++++.+
T Consensus 257 ~~~l~-~GAd~V~vg~~~l~~p~~~~~i~~~l 287 (311)
T 1ep3_A 257 LEMYM-AGASAVAVGTANFADPFVCPKIIDKL 287 (311)
T ss_dssp HHHHH-HTCSEEEECTHHHHCTTHHHHHHHHH
T ss_pred HHHHH-cCCCEEEECHHHHcCcHHHHHHHHHH
Confidence 99996 89999999999998888776665543
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-08 Score=112.05 Aligned_cols=184 Identities=15% Similarity=0.178 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhh-----ccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSEN-----VFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~-----~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+..++++.+.+.+...+.|+|-++..-|- -...++++.+... ...++++|++++..++ ..+.++
T Consensus 174 ~~l~ea~~~m~~~~~~~lpVVd~~g~lvGi---It~~Dll~~~~~~~~~~D~~~~l~vga~ig~~~~-------~~~~a~ 243 (494)
T 1vrd_A 174 ISLEKAKEILHQHRIEKLPLVSKDNKLVGL---ITIKDIMSVIEHPNAARDEKGRLLVGAAVGTSPE-------TMERVE 243 (494)
T ss_dssp --------------------------------------CHHHHTCTTCCBCTTSCBCCEEEECSSTT-------HHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEEEcCCCeEEEE---EEHHHHHhhhccccccccchhhhccccccCcCHh-------HHHHHH
Confidence 456678888889999999999965432222 2223455555433 2346778888865332 457899
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
.++++|++.+++++..-. .... ++.++++.+.++.-.|++
T Consensus 244 ~l~~aGvd~v~i~~~~G~-~~~~--------~e~i~~i~~~~p~~pvi~------------------------------- 283 (494)
T 1vrd_A 244 KLVKAGVDVIVIDTAHGH-SRRV--------IETLEMIKADYPDLPVVA------------------------------- 283 (494)
T ss_dssp HHHHTTCSEEEECCSCCS-SHHH--------HHHHHHHHHHCTTSCEEE-------------------------------
T ss_pred HHHHhCCCEEEEEecCCc-hHHH--------HHHHHHHHHHCCCceEEe-------------------------------
Confidence 999999999999765322 1112 478899999885322222
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc--------CCCCCCCCCCHHHHHHHHhh---CCCcEEEecC
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI--------DCDGQGKGFDMDLIKLISDA---VSIPVIASSG 530 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi--------~~dG~~~G~d~~li~~l~~~---~~ipVIasGG 530 (578)
|| . ...+.++.+.+.|++.|.+..- ..+|. .++.++.+..+.+. .++|||++||
T Consensus 284 ---------g~----~-~t~e~a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~-g~p~~~~l~~v~~~~~~~~ipvia~GG 348 (494)
T 1vrd_A 284 ---------GN----V-ATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGV-GVPQLTAVMECSEVARKYDVPIIADGG 348 (494)
T ss_dssp ---------EE----E-CSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCC-CCCHHHHHHHHHHHHHTTTCCEEEESC
T ss_pred ---------CC----c-CCHHHHHHHHHcCCCEEEEcCCCCccccccccCCC-CccHHHHHHHHHHHHhhcCCCEEEECC
Confidence 00 1 1245678999999999998321 11221 34667777766554 6899999999
Q ss_pred CCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 531 AGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 531 i~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
|++.+|+.+++. .||++|++|++|.
T Consensus 349 I~~~~di~kala-~GAd~V~iGr~~l 373 (494)
T 1vrd_A 349 IRYSGDIVKALA-AGAESVMVGSIFA 373 (494)
T ss_dssp CCSHHHHHHHHH-TTCSEEEESHHHH
T ss_pred cCCHHHHHHHHH-cCCCEEEECHHHh
Confidence 999999999996 8999999999993
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=98.75 E-value=9.6e-08 Score=102.27 Aligned_cols=187 Identities=17% Similarity=0.157 Sum_probs=137.0
Q ss_pred EecCCHHHHHHHHHHcCCCeEEE-EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 304 RNLGKPVELARQYYKEGADEISF-LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 304 ~~~~~p~~~a~~~~~~g~~~i~~-~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+..-+|.++|+.|.+. |.-|-+ .|=.-+.++ ++.|+++++.+.+||. |. | ||+++++ +.+
T Consensus 65 ~~~~~~~~iA~~y~~~-A~~IsvLTd~~~F~gs-------~~dL~~vr~~v~lPvL-----rK--D---FI~d~~Q-i~e 125 (452)
T 1pii_A 65 RDDFDPARIAAIYKHY-ASAISVLTDEKYFQGS-------FNFLPIVSQIAPQPIL-----CK--D---FIIDPYQ-IYL 125 (452)
T ss_dssp CSSCCHHHHHHHHTTT-CSEEEEECCSTTTCCC-------TTHHHHHHHHCCSCEE-----EE--S---CCCSHHH-HHH
T ss_pred CCCCCHHHHHHHHHhh-CcEEEEEecccccCCC-------HHHHHHHHHhcCCCeE-----EE--e---ccCCHHH-HHH
Confidence 3345999999999887 998887 465554321 3556677777899994 33 3 8999996 556
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
+..+|||.|.+-.+.+.+ ..+ .++++. +...|-+ +++-+.
T Consensus 126 a~~~GAD~ILLi~a~l~~-~~l--------~~l~~~-a~~lgm~-~LvEvh----------------------------- 165 (452)
T 1pii_A 126 ARYYQADACLLMLSVLDD-DQY--------RQLAAV-AHSLEMG-VLTEVS----------------------------- 165 (452)
T ss_dssp HHHTTCSEEEEETTTCCH-HHH--------HHHHHH-HHHTTCE-EEEEEC-----------------------------
T ss_pred HHHcCCCEEEEEcccCCH-HHH--------HHHHHH-HHHcCCe-EEEEeC-----------------------------
Confidence 889999999998777763 222 144444 4557733 333221
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l 540 (578)
-.+-++++.++|++-|-++.++-.. ..+|++...++...+ ++++|+.|||.+++|++++
T Consensus 166 -----------------~~eE~~~A~~lga~iIGinnr~L~t--~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~ 226 (452)
T 1pii_A 166 -----------------NEEEQERAIALGAKVVGINNRDLRD--LSIDLNRTRELAPKLGHNVTVISESGINTYAQVREL 226 (452)
T ss_dssp -----------------SHHHHHHHHHTTCSEEEEESEETTT--TEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHH
T ss_pred -----------------CHHHHHHHHHCCCCEEEEeCCCCCC--CCCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHH
Confidence 1456677888999988888876543 367999998887765 6799999999999999999
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.+ . ++|++||+++...+..-..+++.+.
T Consensus 227 ~~-~-a~avLVGealmr~~d~~~~~~~l~~ 254 (452)
T 1pii_A 227 SH-F-ANGFLIGSALMAHDDLHAAVRRVLL 254 (452)
T ss_dssp TT-T-CSEEEECHHHHTCSCHHHHHHHHHH
T ss_pred HH-h-CCEEEEcHHHcCCcCHHHHHHHHHH
Confidence 85 7 9999999999987766666666553
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-08 Score=101.78 Aligned_cols=106 Identities=14% Similarity=0.024 Sum_probs=82.6
Q ss_pred eEEEeeeEeecCC-CCEEEEecceeeeeeccccccEEecCCHH-HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 269 RVIACLDVRANDK-GDLVVTKGDQYDVREHTKENEVRNLGKPV-ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 269 riIp~iDl~~~~~-g~~v~~~G~~~~~~~~~~~~~~~~~~~p~-~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
++++++|++..++ |..|.++||+ ..+. -+|+ ++|+.+++. ++++.+.|++.. +. ..+.|++++
T Consensus 129 ~ivv~iD~k~~~~~g~~V~~~gw~----------~~t~-~~~~~e~a~~~~~~-a~~il~t~i~~d--G~-~~G~d~eli 193 (260)
T 2agk_A 129 RIVVDLSCRKTQDGRWIVAMNKWQ----------TLTD-LELNADTFRELRKY-TNEFLIHAADVE--GL-CGGIDELLV 193 (260)
T ss_dssp GEEEEEEEEEEETTEEEEEETTTT----------EEEE-EEESHHHHHHHTTT-CSEEEEEC----------CCCCHHHH
T ss_pred cEEEEEEeeecCCCceEEEEcCCc----------cccC-ccHHHHHHHHHHHh-cCEEEEEeeccc--cC-cCCCCHHHH
Confidence 7899999974323 3235778886 2222 3888 999999999 999999999873 32 246799999
Q ss_pred HHHhhhc----cccEEEeCCccccccCCCCccChHHHHHHHHHc--Ccceeecchhh--hcc
Q 045794 347 RLTSENV----FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS--GADKISIGSDA--VYA 400 (578)
Q Consensus 347 ~~i~~~~----~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~--Ga~~vv~gt~~--~~~ 400 (578)
+++++.+ ++||+++|||++++| ++++++. |++.|++|+++ +..
T Consensus 194 ~~l~~~~~~~~~iPVIasGGi~s~ed-----------~~~l~~~~~G~~gvivg~al~l~~g 244 (260)
T 2agk_A 194 SKLFEWTKDYDDLKIVYAGGAKSVDD-----------LKLVDELSHGKVDLTFGSSLDIFGG 244 (260)
T ss_dssp HHHHHHHTTCSSCEEEEESCCCCTHH-----------HHHHHHHHTTCEEEECCTTBGGGTC
T ss_pred HHHHHhhcccCCceEEEeCCCCCHHH-----------HHHHHHhcCCCCEEEeeCCHHHcCC
Confidence 9999999 999999999999987 9999988 99999999997 654
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.8e-07 Score=89.43 Aligned_cols=193 Identities=13% Similarity=0.108 Sum_probs=125.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+..+.++...+.|++++|+...|+..- .+.....+.++++++.+..|+.++==+.+.+ +.++.++++
T Consensus 19 ~~l~~~i~~~~~~Gad~i~l~i~Dg~fv--~~~~~~~~~~~~lr~~~~~~~~v~lmv~d~~----------~~i~~~~~a 86 (228)
T 1h1y_A 19 ANLAAEADRMVRLGADWLHMDIMDGHFV--PNLTIGAPVIQSLRKHTKAYLDCHLMVTNPS----------DYVEPLAKA 86 (228)
T ss_dssp GGHHHHHHHHHHTTCSEEEEEEEBSSSS--SCBCBCHHHHHHHHTTCCSEEEEEEESSCGG----------GGHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEecCCcC--cchhhCHHHHHHHHhhcCCcEEEEEEecCHH----------HHHHHHHHc
Confidence 3556778888889999999887665311 1112226888888876655655443334432 238889999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|+|.|.+--...... + .+.++++ +.+|. ++.+++...
T Consensus 87 gad~v~vH~~~~~~~---~-------~~~~~~i-~~~g~-~igv~~~p~------------------------------- 123 (228)
T 1h1y_A 87 GASGFTFHIEVSRDN---W-------QELIQSI-KAKGM-RPGVSLRPG------------------------------- 123 (228)
T ss_dssp TCSEEEEEGGGCTTT---H-------HHHHHHH-HHTTC-EEEEEECTT-------------------------------
T ss_pred CCCEEEECCCCcccH---H-------HHHHHHH-HHcCC-CEEEEEeCC-------------------------------
Confidence 999998864443321 0 1345555 34553 455555211
Q ss_pred EEEcccccCCCCCHHHHHHHHHHc--CCcEEEEeccCCCCCCCCCC---HHHHHHHHhhC-CCcEEEecCCCCHHHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDL--GAGEILLNCIDCDGQGKGFD---MDLIKLISDAV-SIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~--G~~~ii~tdi~~dG~~~G~d---~~li~~l~~~~-~ipVIasGGi~s~eDi~~l 540 (578)
++.+.++.+.+. +++.+++..+...++.+.++ ++.++++++.. ++|+++.|||+. +.+.++
T Consensus 124 ------------t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~ni~~~ 190 (228)
T 1h1y_A 124 ------------TPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVA 190 (228)
T ss_dssp ------------SCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHH
T ss_pred ------------CCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCH-HHHHHH
Confidence 113445566665 89999998776544444444 46677777777 899999999976 899998
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
.+ .|+|++++||++...+- +.+..+.|
T Consensus 191 ~~-aGaD~vvvGsai~~~~d-~~~~~~~l 217 (228)
T 1h1y_A 191 AS-AGANCIVAGSSIFGAAE-PGEVISAL 217 (228)
T ss_dssp HH-HTCCEEEESHHHHTSSC-HHHHHHHH
T ss_pred HH-cCCCEEEECHHHHCCCC-HHHHHHHH
Confidence 85 79999999999987543 44443333
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.1e-08 Score=96.64 Aligned_cols=191 Identities=18% Similarity=0.203 Sum_probs=118.4
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
+.++..+.+.+.+.|++ |.-+++.+..-+......-++.|+ +-.-+|- -.|+++.+| +.+...
T Consensus 22 y~~~~~~~~ai~asg~e-ivtva~rR~~~~~~~~~~~~~~i~---~~~~lpn--taG~~taee-----------Av~~a~ 84 (268)
T 2htm_A 22 YEDFGVMREAIAAAKAE-VVTVSVRRVELKAPGHVGLLEALE---GVRLLPN--TAGARTAEE-----------AVRLAR 84 (268)
T ss_dssp CSCHHHHHHHHHHTTCS-EEEEEEEECC-------CHHHHTT---TSEEEEB--CTTCCSHHH-----------HHHHHH
T ss_pred CCCHHHHHHHHHHhCCC-EEEEEccccCCCCCCcccHHHHHh---hhhccCc--ccCCCCHHH-----------HHHHHH
Confidence 36899999999999998 555668765311111123334443 2112333 469999876 666666
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHH--HHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQI--SRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
++. -++||..++- |.+.....+.|+..+-+ ++.. ++++
T Consensus 85 lar--e~~gt~~iKl--Evi~d~~~l~pD~~~tv~aa~~L----------~k~G-------------------------- 124 (268)
T 2htm_A 85 LGR--LLTGERWVKL--EVIPDPTYLLPDPLETLKAAERL----------IEED-------------------------- 124 (268)
T ss_dssp HHH--HHHCCSEEBC--CCCSCTTTTCCCHHHHHHHHHHH----------HHTT--------------------------
T ss_pred hhh--HhcCcceeee--eeccCccccCcCHHHHHHHHHHH----------HHCC--------------------------
Confidence 533 3677766430 11111112223322222 1222 0111
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCC-CCCCCCC-CHHHHHHHHh-hCC-CcEEEecCCCCHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDC-DGQGKGF-DMDLIKLISD-AVS-IPVIASSGAGAVEHFSD 539 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~-dG~~~G~-d~~li~~l~~-~~~-ipVIasGGi~s~eDi~~ 539 (578)
|++.-.. .-+ ...++++++.|+..| ..+.. -|+.+|+ +.++++.+.+ ..+ +|||+.|||++++|+.+
T Consensus 125 -f~Vlpy~-----~~D-~~~ak~l~~~G~~aV--mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~ 195 (268)
T 2htm_A 125 -FLVLPYM-----GPD-LVLAKRLAALGTATV--MPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAE 195 (268)
T ss_dssp -CEECCEE-----CSC-HHHHHHHHHHTCSCB--EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHH
T ss_pred -CEEeecc-----CCC-HHHHHHHHhcCCCEE--EecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHH
Confidence 0110000 113 489999999999877 55433 5788888 8899999988 678 99999999999999999
Q ss_pred HHHhcCchHHhhhhhhccCCCCHH
Q 045794 540 VFRKTNASAALAAGIFHRKEVPIQ 563 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~~~~~~~ 563 (578)
+++ +||+||++||+++....+..
T Consensus 196 Ame-LGAdgVlVgSAI~~a~dP~~ 218 (268)
T 2htm_A 196 VME-LGLDAVLVNTAIAEAQDPPA 218 (268)
T ss_dssp HHH-TTCCEEEESHHHHTSSSHHH
T ss_pred HHH-cCCCEEEEChHHhCCCCHHH
Confidence 996 99999999999997666543
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=98.71 E-value=8e-08 Score=99.40 Aligned_cols=186 Identities=18% Similarity=0.210 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+| ++|....+.|.-.++. ... .......+.|+++.+.+..|+.++..+.+.+ ..+.++.+++.
T Consensus 38 s~~-~la~av~~aGglG~i~--~~~-----~~~~~l~~~i~~i~~~~~~p~gVnl~~~~~~--------~~~~~~~~~~~ 101 (326)
T 3bo9_A 38 GTP-TLAAAVSEAGGLGIIG--SGA-----MKPDDLRKAISELRQKTDKPFGVNIILVSPW--------ADDLVKVCIEE 101 (326)
T ss_dssp SCH-HHHHHHHHTTSBEEEE--CTT-----CCHHHHHHHHHHHHTTCSSCEEEEEETTSTT--------HHHHHHHHHHT
T ss_pred CCH-HHHHHHHhCCCcEEeC--CCC-----CCHHHHHHHHHHHHHhcCCCEEEEEeccCCC--------HHHHHHHHHHC
Confidence 354 6777778888644432 111 1112234567777776667887765552211 12568888899
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|++.|.++.. +++ ++++.+. .+| -.+++.+
T Consensus 102 g~d~V~l~~g---~p~-----------~~~~~l~-~~g-~~v~~~v---------------------------------- 131 (326)
T 3bo9_A 102 KVPVVTFGAG---NPT-----------KYIRELK-ENG-TKVIPVV---------------------------------- 131 (326)
T ss_dssp TCSEEEEESS---CCH-----------HHHHHHH-HTT-CEEEEEE----------------------------------
T ss_pred CCCEEEECCC---CcH-----------HHHHHHH-HcC-CcEEEEc----------------------------------
Confidence 9999998642 232 3445554 344 2333322
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC-CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG-KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTN 545 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~-~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G 545 (578)
...+.++.+.+.|++.|++++....|.. .-++++++.++++.+++|||++|||++.+|+.+++. .|
T Consensus 132 ------------~s~~~a~~a~~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~-~G 198 (326)
T 3bo9_A 132 ------------ASDSLARMVERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFA-LG 198 (326)
T ss_dssp ------------SSHHHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH-HT
T ss_pred ------------CCHHHHHHHHHcCCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH-hC
Confidence 1256778889999999999988766542 236899999999989999999999999999999996 89
Q ss_pred chHHhhhhhhccCCC--CHHHHHHHHHh
Q 045794 546 ASAALAAGIFHRKEV--PIQSVKEHLYK 571 (578)
Q Consensus 546 ~~gv~vgsa~~~~~~--~~~~~~~~l~~ 571 (578)
++||.+||+|...+- .-+.+|+.+.+
T Consensus 199 A~gV~vGs~~~~~~e~~~~~~~k~~~~~ 226 (326)
T 3bo9_A 199 AEAVQMGTRFVASVESDVHPVYKEKIVK 226 (326)
T ss_dssp CSEEEESHHHHTBSSCCSCHHHHHHHHH
T ss_pred CCEEEechHHHcCccccccHHHHHHHHh
Confidence 999999999986544 34567776643
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-07 Score=93.98 Aligned_cols=188 Identities=13% Similarity=0.171 Sum_probs=120.7
Q ss_pred CHHHHHHHHHHcCCCeEEEE-ec-ccCCCCCCCC-------------chhHHHHHHHhhh-ccccEEEeCCccccccCCC
Q 045794 308 KPVELARQYYKEGADEISFL-NI-TGFRDFPLGD-------------LPMLQVLRLTSEN-VFVPLTVGGGIRDFTDANG 371 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~-Dl-~~~~~~~~~~-------------~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~ 371 (578)
.-+++++.+.+.|+|.|-+= =. |-..||+.-+ ..-++++++++++ ..+|+.+=+-.+.+
T Consensus 35 ~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v----- 109 (271)
T 3nav_A 35 QSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLV----- 109 (271)
T ss_dssp HHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHH-----
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHH-----
Confidence 34678888999999977752 00 1111222111 1335788888877 78999653322221
Q ss_pred CccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceee
Q 045794 372 RHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVR 451 (578)
Q Consensus 372 ~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~ 451 (578)
+.|+..+-++++.++|+|.+++.-...+.. +.+.+.++++|-+.|.+ +-
T Consensus 110 ~~~g~~~f~~~~~~aGvdGvIipDlp~ee~------------~~~~~~~~~~gl~~I~l-va------------------ 158 (271)
T 3nav_A 110 YARGIDDFYQRCQKAGVDSVLIADVPTNES------------QPFVAAAEKFGIQPIFI-AP------------------ 158 (271)
T ss_dssp HHTCHHHHHHHHHHHTCCEEEETTSCGGGC------------HHHHHHHHHTTCEEEEE-EC------------------
T ss_pred HHHhHHHHHHHHHHCCCCEEEECCCCHHHH------------HHHHHHHHHcCCeEEEE-EC------------------
Confidence 334444558999999999999876655532 34567778898653322 20
Q ss_pred eccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc-CCCCCCCCCC---HHHHHHHHhhCCCcEEE
Q 045794 452 VTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI-DCDGQGKGFD---MDLIKLISDAVSIPVIA 527 (578)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi-~~dG~~~G~d---~~li~~l~~~~~ipVIa 527 (578)
..+..+.++++.+.+.+.|-+... ...|..++.+ .++++++++.+++||++
T Consensus 159 -------------------------p~t~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~v 213 (271)
T 3nav_A 159 -------------------------PTASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALL 213 (271)
T ss_dssp -------------------------TTCCHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTTCCCEEE
T ss_pred -------------------------CCCCHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEE
Confidence 123357778888887665544333 3456555543 36789998888999999
Q ss_pred ecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 528 SSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 528 sGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
++||++++++++... .|+|||+|||++.+
T Consensus 214 GfGIst~e~~~~~~~-~gADgvIVGSAiv~ 242 (271)
T 3nav_A 214 GFGISEPAQVKQAIE-AGAAGAISGSAVVK 242 (271)
T ss_dssp CSSCCSHHHHHHHHH-TTCSEEEESHHHHH
T ss_pred ECCCCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 999999999996664 89999999999964
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-07 Score=96.44 Aligned_cols=186 Identities=21% Similarity=0.240 Sum_probs=124.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChH-HHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSL-EVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~-~~~~~~l~ 385 (578)
.+| +++....+.|+-.++.. .. .......+.++++.+.++.|+.++=-+. .|++ +.++.+.+
T Consensus 24 s~~-~la~av~~aG~lG~i~~--~~-----~~~~~~~~~i~~i~~~~~~p~gvnl~~~---------~~~~~~~~~~a~~ 86 (332)
T 2z6i_A 24 ADG-DLAGAVSKAGGLGIIGG--GN-----APKEVVKANIDKIKSLTDKPFGVNIMLL---------SPFVEDIVDLVIE 86 (332)
T ss_dssp CCH-HHHHHHHHHTSBEEEEC--TT-----CCHHHHHHHHHHHHHHCCSCEEEEECTT---------STTHHHHHHHHHH
T ss_pred CcH-HHHHHHHhCCCcEEeCC--CC-----CCHHHHHHHHHHHHHhcCCCEEEEecCC---------CCCHHHHHHHHHH
Confidence 344 57777888887333321 11 0111224556666665566765432221 2332 45888889
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
.|++.|.++.. .+. ++++.+.+ +| -.|++.+
T Consensus 87 ~g~d~V~~~~g---~p~-----------~~i~~l~~-~g-~~v~~~v--------------------------------- 117 (332)
T 2z6i_A 87 EGVKVVTTGAG---NPS-----------KYMERFHE-AG-IIVIPVV--------------------------------- 117 (332)
T ss_dssp TTCSEEEECSS---CGG-----------GTHHHHHH-TT-CEEEEEE---------------------------------
T ss_pred CCCCEEEECCC---ChH-----------HHHHHHHH-cC-CeEEEEe---------------------------------
Confidence 99999998753 122 44556544 44 2333322
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC-CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ-GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~-~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
+..+.++.+++.|++.|++......|+ ...+++++++++++.+++|||++|||.+.+++.+++. .
T Consensus 118 -------------~~~~~a~~~~~~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~-~ 183 (332)
T 2z6i_A 118 -------------PSVALAKRMEKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFM-L 183 (332)
T ss_dssp -------------SSHHHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH-T
T ss_pred -------------CCHHHHHHHHHcCCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-c
Confidence 124578889999999999987654333 2346899999999999999999999999999999996 8
Q ss_pred CchHHhhhhhhccCC--CCHHHHHHHHHhC
Q 045794 545 NASAALAAGIFHRKE--VPIQSVKEHLYKE 572 (578)
Q Consensus 545 G~~gv~vgsa~~~~~--~~~~~~~~~l~~~ 572 (578)
|++||.+||+|...+ ...+.+|+.+.+.
T Consensus 184 GAdgV~vGs~~l~~~e~~~~~~~k~~~~~~ 213 (332)
T 2z6i_A 184 GAEAVQVGTRFVVAKESNAHPNYKEKILKA 213 (332)
T ss_dssp TCSEEEECHHHHTBTTCCSCHHHHHHHHHC
T ss_pred CCCEEEecHHHhcCccccccHHHHHHHHhC
Confidence 999999999998766 3456777777553
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-08 Score=100.65 Aligned_cols=77 Identities=19% Similarity=0.174 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHcC-CCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEG-ADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g-~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+|. .++.|.+.| +.++|++||++ . +. ..+.++|+++++.+ ++|+++|||||+.|+ +++++
T Consensus 139 ~~~~-~~~~~a~~g~~~~~~~VYl~s-~-G~---~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~-----------a~~~~ 201 (240)
T 1viz_A 139 LNMD-DIVAYARVSELLQLPIFYLEY-S-GV---LGDIEAVKKTKAVLETSTLFYGGGIKDAET-----------AKQYA 201 (240)
T ss_dssp CCHH-HHHHHHHHHHHTTCSEEEEEC-T-TS---CCCHHHHHHHHHTCSSSEEEEESSCCSHHH-----------HHHHH
T ss_pred CCHH-HHHHHHHhCcccCCCEEEEeC-C-Cc---cChHHHHHHHHHhcCCCCEEEEeccCCHHH-----------HHHHH
Confidence 4666 888888888 78889999988 3 32 45789999999999 999999999999976 99999
Q ss_pred HcCcceeecchhhhccc
Q 045794 385 RSGADKISIGSDAVYAA 401 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~ 401 (578)
+ |||+||+||++++++
T Consensus 202 ~-gAd~VIVGSa~v~~~ 217 (240)
T 1viz_A 202 E-HADVIVVGNAVYEDF 217 (240)
T ss_dssp T-TCSEEEECTHHHHCH
T ss_pred h-CCCEEEEChHHHhCH
Confidence 9 999999999999953
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.6e-08 Score=102.69 Aligned_cols=124 Identities=22% Similarity=0.247 Sum_probs=91.4
Q ss_pred HHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCC
Q 045794 378 EVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGP 457 (578)
Q Consensus 378 ~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~ 457 (578)
+.++.++++|++.|+++|..-. +..+ ++.++++.+.|+ -.|++.
T Consensus 147 e~~~~lveaGvdvIvldta~G~-~~~~--------~e~I~~ik~~~~-i~Vi~g-------------------------- 190 (400)
T 3ffs_A 147 ERAKLLVEAGVDVIVLDSAHGH-SLNI--------IRTLKEIKSKMN-IDVIVG-------------------------- 190 (400)
T ss_dssp HHHHHHHHHTCSEEEECCSCCS-BHHH--------HHHHHHHHTTCC-CEEEEE--------------------------
T ss_pred HHHHHHHHcCCCEEEEeCCCCC-cccH--------HHHHHHHHhcCC-CeEEEe--------------------------
Confidence 5699999999999999876543 2222 377888888785 334431
Q ss_pred CCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCC-CCCHHHHHHHHhh---CCCcEEE
Q 045794 458 NGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGK-GFDMDLIKLISDA---VSIPVIA 527 (578)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~-G~d~~li~~l~~~---~~ipVIa 527 (578)
++...+.++.+.+.|++.|++. ..+++.... .+++.++.++++. +++|||+
T Consensus 191 -------------------~V~t~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA 251 (400)
T 3ffs_A 191 -------------------NVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIA 251 (400)
T ss_dssp -------------------EECSHHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEE
T ss_pred -------------------ecCCHHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEe
Confidence 1122678899999999999982 222332223 4678888888654 5899999
Q ss_pred ecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 528 SSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 528 sGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+|||.+.+|+.+++. .||++|++|++|..
T Consensus 252 ~GGI~~~~di~kala-lGAd~V~vGt~f~~ 280 (400)
T 3ffs_A 252 DGGIRYSGDIGKALA-VGASSVMIGSILAG 280 (400)
T ss_dssp ESCCCSHHHHHHHHT-TTCSEEEECGGGTT
T ss_pred cCCCCCHHHHHHHHH-cCCCEEEEChHHhc
Confidence 999999999999995 99999999999864
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.65 E-value=5e-07 Score=90.49 Aligned_cols=199 Identities=12% Similarity=0.094 Sum_probs=118.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccC---CCCCCC-------------CchhHHHHHHHhhhc-cccEEEeCCccccccCC
Q 045794 308 KPVELARQYYKEGADEISFLNITGF---RDFPLG-------------DLPMLQVLRLTSENV-FVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~---~~~~~~-------------~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~ 370 (578)
.-+++++.+.+.|+|.|-+ ++--. .+++.- -...+++++++++.+ .+|+.+=+-.+.+
T Consensus 32 ~~~~~~~~l~~~G~D~IEl-G~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v---- 106 (262)
T 2ekc_A 32 TSLKAFKEVLKNGTDILEI-GFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPI---- 106 (262)
T ss_dssp HHHHHHHHHHHTTCSEEEE-ECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHH----
T ss_pred HHHHHHHHHHHcCCCEEEE-CCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHH----
Confidence 4578999999999997765 43211 011100 012346788998887 8999662222211
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCcccccee
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAV 450 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~ 450 (578)
+.|+..+.++.+.++|+|.+++.....+.. +.+.+.++++|-. ++.-+-
T Consensus 107 -~~~g~~~f~~~~~~aG~dgvii~dl~~ee~------------~~~~~~~~~~gl~-~i~l~~----------------- 155 (262)
T 2ekc_A 107 -FRIGLEKFCRLSREKGIDGFIVPDLPPEEA------------EELKAVMKKYVLS-FVPLGA----------------- 155 (262)
T ss_dssp -HHHCHHHHHHHHHHTTCCEEECTTCCHHHH------------HHHHHHHHHTTCE-ECCEEC-----------------
T ss_pred -HHhhHHHHHHHHHHcCCCEEEECCCCHHHH------------HHHHHHHHHcCCc-EEEEeC-----------------
Confidence 223334558889999999988865444321 2334555677732 221110
Q ss_pred eeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC-CCCCCCCCC----HHHHHHHHhhCCCcE
Q 045794 451 RVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID-CDGQGKGFD----MDLIKLISDAVSIPV 525 (578)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~-~dG~~~G~d----~~li~~l~~~~~ipV 525 (578)
..+..+.++++.+...+.+.+..+. ..|...+.. .++++++++.+++||
T Consensus 156 --------------------------p~t~~~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~~~pv 209 (262)
T 2ekc_A 156 --------------------------PTSTRKRIKLICEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYRELCDKPV 209 (262)
T ss_dssp --------------------------TTCCHHHHHHHHHHCSSCEEEESSCC---------CHHHHHHHHHHHHHCCSCE
T ss_pred --------------------------CCCCHHHHHHHHHhCCCCEEEEecCCccCCCCCcCcccHHHHHHHHHhhcCCCE
Confidence 1122345555555555544433332 445555544 378899999889999
Q ss_pred EEecCCCCHHHHHHHHHhcCchHHhhhhhhccC--CCCHHHHHHHHH
Q 045794 526 IASSGAGAVEHFSDVFRKTNASAALAAGIFHRK--EVPIQSVKEHLY 570 (578)
Q Consensus 526 IasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~--~~~~~~~~~~l~ 570 (578)
.+++||++++++.++. .|+|||+|||++... .-....++++++
T Consensus 210 ~vG~GI~t~e~~~~~~--~gADgvIVGSai~~~~~~~~~~~~~~~~~ 254 (262)
T 2ekc_A 210 VVGFGVSKKEHAREIG--SFADGVVVGSALVKLAGQKKIEDLGNLVK 254 (262)
T ss_dssp EEESSCCSHHHHHHHH--TTSSEEEECHHHHHHHHTTCHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHH--cCCCEEEECHHHHhhhhhhhHHHHHHHHH
Confidence 9999999999999953 689999999999754 224556666554
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.4e-07 Score=92.66 Aligned_cols=183 Identities=17% Similarity=0.209 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeccc---CCCCC-------------CCCchhHHHHHHHhhhccccEEEeCCccccccCCC
Q 045794 308 KPVELARQYYKEGADEISFLNITG---FRDFP-------------LGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANG 371 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~---~~~~~-------------~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~ 371 (578)
+-++.++.+.+.|+|.|++ +..- ..+++ ..-..-+++++++++.+++|+.+=.-....
T Consensus 33 ~~~~~~~~l~~~Gad~iel-g~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~~~~~~----- 106 (262)
T 1rd5_A 33 TTAEALRLLDGCGADVIEL-GVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPI----- 106 (262)
T ss_dssp HHHHHHHHHHHTTCSSEEE-ECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHH-----
T ss_pred HHHHHHHHHHHcCCCEEEE-CCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHH-----
Confidence 4567899999999999997 3311 11110 011223577899988888998653211110
Q ss_pred CccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceee
Q 045794 372 RHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVR 451 (578)
Q Consensus 372 ~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~ 451 (578)
.... ++.+.++|++.|++.-...... .++++ ..+++|-+ .++.+-
T Consensus 107 -~~~~---~~~a~~aGadgv~v~d~~~~~~-----------~~~~~-~~~~~g~~-~i~~~a------------------ 151 (262)
T 1rd5_A 107 -MFRS---LAKMKEAGVHGLIVPDLPYVAA-----------HSLWS-EAKNNNLE-LVLLTT------------------ 151 (262)
T ss_dssp -HSCC---THHHHHTTCCEEECTTCBTTTH-----------HHHHH-HHHHTTCE-ECEEEC------------------
T ss_pred -HHHH---HHHHHHcCCCEEEEcCCChhhH-----------HHHHH-HHHHcCCc-eEEEEC------------------
Confidence 0011 3458899999999864443321 13333 34556643 222221
Q ss_pred eccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC-CCCCCCCC---CHHHHHHHHhhCCCcEEE
Q 045794 452 VTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID-CDGQGKGF---DMDLIKLISDAVSIPVIA 527 (578)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~-~dG~~~G~---d~~li~~l~~~~~ipVIa 527 (578)
..+..+.++.+.+.+.+.+.+..+. ..|...+. .+++++++++.+++||++
T Consensus 152 -------------------------~~t~~e~~~~~~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~v 206 (262)
T 1rd5_A 152 -------------------------PAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAV 206 (262)
T ss_dssp -------------------------TTSCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEE
T ss_pred -------------------------CCCCHHHHHHHHhcCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhcCCeEEE
Confidence 1123556666666666656554431 13444443 346889998888999999
Q ss_pred ecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 528 SSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 528 sGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.|||++.+++.++.+ .||++|+|||++..
T Consensus 207 gGGI~~~e~~~~~~~-~GAdgvvVGSai~~ 235 (262)
T 1rd5_A 207 GFGISKPEHVKQIAQ-WGADGVIIGSAMVR 235 (262)
T ss_dssp ESCCCSHHHHHHHHH-TTCSEEEECHHHHH
T ss_pred ECCcCCHHHHHHHHH-cCCCEEEEChHHHh
Confidence 999999999999985 89999999999875
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.62 E-value=3.7e-07 Score=89.66 Aligned_cols=193 Identities=17% Similarity=0.112 Sum_probs=123.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+..+.++.+.+.|++++|+=..|+..- .+-..-.++++++++.+..|+.+-==+.+.++ -++.++++
T Consensus 17 ~~l~~~i~~~~~~Gad~ihldi~DG~fv--p~~~~g~~~v~~lr~~~~~~~~vhlmv~dp~~----------~i~~~~~a 84 (230)
T 1tqj_A 17 SRLGEEIKAVDEAGADWIHVDVMDGRFV--PNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK----------YVEDFAKA 84 (230)
T ss_dssp GGHHHHHHHHHHTTCSEEEEEEEBSSSS--SCBCBCHHHHHHHGGGCCSEEEEEEESSSGGG----------THHHHHHH
T ss_pred hHHHHHHHHHHHcCCCEEEEEEEecCCC--cchhhhHHHHHHHHhhcCCcEEEEEEccCHHH----------HHHHHHHc
Confidence 4566788888889999999655454210 01112247888888766555543222344332 27889999
Q ss_pred Ccceeecchh--hhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 387 GADKISIGSD--AVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 387 Ga~~vv~gt~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
|||.|.+.-. +.... .+.++++ +.+|. ++.+++....
T Consensus 85 Gadgv~vh~e~~~~~~~-----------~~~~~~i-~~~g~-~~gv~~~p~t---------------------------- 123 (230)
T 1tqj_A 85 GADIISVHVEHNASPHL-----------HRTLCQI-RELGK-KAGAVLNPST---------------------------- 123 (230)
T ss_dssp TCSEEEEECSTTTCTTH-----------HHHHHHH-HHTTC-EEEEEECTTC----------------------------
T ss_pred CCCEEEECcccccchhH-----------HHHHHHH-HHcCC-cEEEEEeCCC----------------------------
Confidence 9999999866 44322 1344554 55763 5666663111
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC---CHHHHHHHHhhC-----CCcEEEecCCCCHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF---DMDLIKLISDAV-----SIPVIASSGAGAVEH 536 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~---d~~li~~l~~~~-----~ipVIasGGi~s~eD 536 (578)
+.+.++.+.+ +++.|++..+...-..+.+ -++.++++++.. ++||.+.|||.. +.
T Consensus 124 ---------------~~e~~~~~~~-~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~ 186 (230)
T 1tqj_A 124 ---------------PLDFLEYVLP-VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NN 186 (230)
T ss_dssp ---------------CGGGGTTTGG-GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TT
T ss_pred ---------------cHHHHHHHHh-cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HH
Confidence 1122222222 6898888877554112222 468888888777 799999999976 99
Q ss_pred HHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 537 FSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 537 i~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
+.++.+ .|++++++||++...+- +.+..+.|++
T Consensus 187 ~~~~~~-aGad~vvvGSai~~a~d-~~~~~~~l~~ 219 (230)
T 1tqj_A 187 TWQVLE-AGANAIVAGSAVFNAPN-YAEAIAGVRN 219 (230)
T ss_dssp THHHHH-HTCCEEEESHHHHTSSC-HHHHHHHHHT
T ss_pred HHHHHH-cCCCEEEECHHHHCCCC-HHHHHHHHHH
Confidence 999985 89999999999987543 5555555554
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.3e-07 Score=95.97 Aligned_cols=190 Identities=16% Similarity=0.159 Sum_probs=124.9
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccCh-HHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSS-LEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~-~~~~~~~l~ 385 (578)
.+| ++|....+.|.-.+... ... .....-.+.++++.+.+..|+.++..+... . ..|+ .+.++.+.+
T Consensus 27 s~~-~la~av~~aGglG~i~~--~~~----~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~----~-~~~~~~~~~~~~~~ 94 (328)
T 2gjl_A 27 GRA-EMAAAVANAGGLATLSA--LTQ----PSPEALAAEIARCRELTDRPFGVNLTLLPT----Q-KPVPYAEYRAAIIE 94 (328)
T ss_dssp CSH-HHHHHHHHTTSBCEEET--TTS----SSHHHHHHHHHHHHHHCSSCCEEEEEECCC----S-SCCCHHHHHHHHHH
T ss_pred CcH-HHHHHHHHCCCeEEeCC--CCC----CCHHHHHHHHHHHHHhcCCCeEEEEecccc----c-cCccHHHHHHHHHh
Confidence 355 57778788875333321 110 001223456777777667788776665410 0 0122 256888899
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
.|++.|.++-. .+. +.++.+.+ +| -.++..+
T Consensus 95 ~g~d~V~~~~g---~p~-----------~~~~~l~~-~g-i~vi~~v--------------------------------- 125 (328)
T 2gjl_A 95 AGIRVVETAGN---DPG-----------EHIAEFRR-HG-VKVIHKC--------------------------------- 125 (328)
T ss_dssp TTCCEEEEEES---CCH-----------HHHHHHHH-TT-CEEEEEE---------------------------------
T ss_pred cCCCEEEEcCC---CcH-----------HHHHHHHH-cC-CCEEeeC---------------------------------
Confidence 99999998632 222 44555543 44 2333211
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC---CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG---KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~---~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~ 542 (578)
...+.++.+.+.|++.|++......|+. ..+++++++++++.+++|||++|||++.+++.+++.
T Consensus 126 -------------~t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al~ 192 (328)
T 2gjl_A 126 -------------TAVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAALA 192 (328)
T ss_dssp -------------SSHHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH
Confidence 1145677888999999999887665442 236899999999988999999999999999999986
Q ss_pred hcCchHHhhhhhhccCCC--CHHHHHHHHHh
Q 045794 543 KTNASAALAAGIFHRKEV--PIQSVKEHLYK 571 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~~~~--~~~~~~~~l~~ 571 (578)
.|++||++||++...+- .-+.+|+.+.+
T Consensus 193 -~GAdgV~vGs~~~~~~e~~~~~~~k~~~~~ 222 (328)
T 2gjl_A 193 -LGADAINMGTRFLATRECPIHPAVKAAIRA 222 (328)
T ss_dssp -HTCSEEEESHHHHTSSSSCSCHHHHHHHHH
T ss_pred -cCCCEEEECHHHHcCccccccHHHHHHHHh
Confidence 89999999999987654 34456666643
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.2e-08 Score=96.52 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+|.+++..-.....-.+|++||++ .+ .. .|.++|+++++.+ ++|+++|||||+.|+ +++++ .
T Consensus 138 ~~e~~~~~a~~a~~~g~~~VYld~-sG-~~---~~~~~i~~i~~~~~~~Pv~vGGGI~t~e~-----------a~~~~-~ 200 (228)
T 3vzx_A 138 NMDDIVAYARVSELLQLPIFYLEY-SG-VL---GDIEAVKKTKAVLETSTLFYGGGIKDAET-----------AKQYA-E 200 (228)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC-TT-SC---CCHHHHHHHHHHCSSSEEEEESSCCSHHH-----------HHHHH-T
T ss_pred CHHHHHHHHHHHHHcCCCEEEecC-CC-Cc---CCHHHHHHHHHhcCCCCEEEeCCCCCHHH-----------HHHHH-h
Confidence 455554433332234477888888 33 22 2689999999999 799999999999976 99998 7
Q ss_pred Ccceeecchhhhcc
Q 045794 387 GADKISIGSDAVYA 400 (578)
Q Consensus 387 Ga~~vv~gt~~~~~ 400 (578)
|||+||+||+++++
T Consensus 201 gAD~VVVGSa~v~~ 214 (228)
T 3vzx_A 201 HADVIVVGNAVYED 214 (228)
T ss_dssp TCSEEEECTHHHHC
T ss_pred CCCEEEEChHHhcC
Confidence 99999999999995
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.7e-07 Score=88.03 Aligned_cols=180 Identities=13% Similarity=0.131 Sum_probs=120.7
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccC-------CCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGF-------RDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEV 379 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~-------~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~ 379 (578)
.+..+.++...+.|++.|++=+=+.. ... .........++++++..++|+.+- +.
T Consensus 43 ~~~~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~-~~~~~~a~~l~~l~~~~~~~liIn----d~------------- 104 (243)
T 3o63_A 43 GDLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQA-RDELAACEILADAAHRYGALFAVN----DR------------- 104 (243)
T ss_dssp CCHHHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCH-HHHHHHHHHHHHHHHHTTCEEEEE----SC-------------
T ss_pred chHHHHHHHHHHCCCCEEEEccCCCCccccccCCCH-HHHHHHHHHHHHHHHhhCCEEEEe----CH-------------
Confidence 46788898888999998887554310 000 000112244666677778999863 32
Q ss_pred HHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCC
Q 045794 380 ASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNG 459 (578)
Q Consensus 380 ~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (578)
++-..+.|||.|=++...+. ..++.+.+|...+ +++.+.
T Consensus 105 ~~lA~~~gAdGVHLg~~dl~----------------~~~~r~~~~~~~~-iG~S~h------------------------ 143 (243)
T 3o63_A 105 ADIARAAGADVLHLGQRDLP----------------VNVARQILAPDTL-IGRSTH------------------------ 143 (243)
T ss_dssp HHHHHHHTCSEEEECTTSSC----------------HHHHHHHSCTTCE-EEEEEC------------------------
T ss_pred HHHHHHhCCCEEEecCCcCC----------------HHHHHHhhCCCCE-EEEeCC------------------------
Confidence 45577789999999875543 2344555665433 333321
Q ss_pred CCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCC---CCCHHHHHHHHhh--CCCcEEEecCCCCH
Q 045794 460 EEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK---GFDMDLIKLISDA--VSIPVIASSGAGAV 534 (578)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~---G~d~~li~~l~~~--~~ipVIasGGi~s~ 534 (578)
++. -++++.+.|++.|.+..+-...+.. ..+++.++++++. .++||++.||| +.
T Consensus 144 -------------------t~~-Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~ 202 (243)
T 3o63_A 144 -------------------DPD-QVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NA 202 (243)
T ss_dssp -------------------SHH-HHHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CT
T ss_pred -------------------CHH-HHHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CH
Confidence 233 4667778999999987654333332 3578999999876 58999999999 89
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHH
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKE 567 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~ 567 (578)
+++.++++ .|++||++++++...+-+...+++
T Consensus 203 ~ni~~~~~-aGa~gvav~sai~~a~dp~~a~~~ 234 (243)
T 3o63_A 203 QRLPAVLD-AGARRIVVVRAITSADDPRAAAEQ 234 (243)
T ss_dssp TTHHHHHH-TTCCCEEESHHHHTCSSHHHHHHH
T ss_pred HHHHHHHH-cCCCEEEEeHHHhCCCCHHHHHHH
Confidence 99999986 999999999999876554433333
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-06 Score=87.42 Aligned_cols=197 Identities=17% Similarity=0.205 Sum_probs=118.6
Q ss_pred ecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhh--ccccE--EEeCCccccccCCCCccChHHHH
Q 045794 305 NLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSEN--VFVPL--TVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 305 ~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~--~~~pi--~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
...+|.++++.+.+.|++.|.+ +- + .++.+.+. ..+|+ ++++|..-..| ....+..+.+
T Consensus 43 ~~~~~~~~~~~~~~~g~~~i~~-~~-~-------------~~~~~~~~~~~~~~~~v~~~~~~~~~~d--~~~~~~~~~v 105 (273)
T 2qjg_A 43 GLIDIRKTVNDVAEGGANAVLL-HK-G-------------IVRHGHRGYGKDVGLIIHLSGGTAISPN--PLKKVIVTTV 105 (273)
T ss_dssp TSSSHHHHHHHHHHHTCSEEEE-CH-H-------------HHHSCCCSSSCCCEEEEECEECCTTSSS--TTCCEECSCH
T ss_pred chhhHHHHHHHHHhcCCCEEEe-CH-H-------------HHHHHHHhhcCCCCEEEEEcCCCcCCCC--cccchHHHHH
Confidence 3579999999999999998864 21 1 11111110 13455 44455410001 0011123459
Q ss_pred HHHHHcCccee--ec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCC
Q 045794 381 SEYFRSGADKI--SI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLG 456 (578)
Q Consensus 381 ~~~l~~Ga~~v--v~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~ 456 (578)
+++++.||+.| .+ ++... .++++ ....+.+++++||-. +++-++.....
T Consensus 106 ~~a~~~Ga~~v~~~l~~~~~~~---~~~~~-----~~~~v~~~~~~~g~~-viv~~~~~G~~------------------ 158 (273)
T 2qjg_A 106 EEAIRMGADAVSIHVNVGSDED---WEAYR-----DLGMIAETCEYWGMP-LIAMMYPRGKH------------------ 158 (273)
T ss_dssp HHHHHTTCSEEEEEEEETSTTH---HHHHH-----HHHHHHHHHHHHTCC-EEEEEEECSTT------------------
T ss_pred HHHHHcCCCEEEEEEecCCCCH---HHHHH-----HHHHHHHHHHHcCCC-EEEEeCCCCcc------------------
Confidence 99999999998 44 43211 11110 012344555668755 44433322110
Q ss_pred CCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCC--H
Q 045794 457 PNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA--V 534 (578)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s--~ 534 (578)
+ ..++.. -++.+.++.+++.|++.|.+.. +.|++.++++++.+++||+++|||+. .
T Consensus 159 ----------l-~~~~~~---~~~~~~a~~a~~~Gad~i~~~~--------~~~~~~l~~i~~~~~ipvva~GGi~~~~~ 216 (273)
T 2qjg_A 159 ----------I-QNERDP---ELVAHAARLGAELGADIVKTSY--------TGDIDSFRDVVKGCPAPVVVAGGPKTNTD 216 (273)
T ss_dssp ----------C-SCTTCH---HHHHHHHHHHHHTTCSEEEECC--------CSSHHHHHHHHHHCSSCEEEECCSCCSSH
T ss_pred ----------c-CCCCCH---hHHHHHHHHHHHcCCCEEEECC--------CCCHHHHHHHHHhCCCCEEEEeCCCCCCH
Confidence 0 011111 1234556899999999776652 36899999999888999999999995 7
Q ss_pred HH----HHHHHHhcCchHHhhhhhhccCCCCHHHHHHH
Q 045794 535 EH----FSDVFRKTNASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 535 eD----i~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
+| +.++.+ .|++|+++|++++..+.+...++++
T Consensus 217 ~~~~~~~~~~~~-~Ga~gv~vg~~i~~~~~~~~~~~~l 253 (273)
T 2qjg_A 217 EEFLQMIKDAME-AGAAGVAVGRNIFQHDDVVGITRAV 253 (273)
T ss_dssp HHHHHHHHHHHH-HTCSEEECCHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCcEEEeeHHhhCCCCHHHHHHHH
Confidence 77 666654 8999999999999888765555444
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=4.3e-08 Score=107.68 Aligned_cols=185 Identities=15% Similarity=0.171 Sum_probs=119.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhh-----ccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSEN-----VFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~-----~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+..++++.+.+.+...+.++|-++..-|-..+. ++++.+... .+.++.+|.++.+..+ ..+.++.
T Consensus 193 ~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~---Dll~~~~~~~~~~~~~~rl~vga~vG~~~~-------~~~~a~~ 262 (514)
T 1jcn_A 193 TLKEANEILQRSKKGKLPIVNDCDELVAIIART---DLKKNRDYPLASKDSQKQLLCGAAVGTRED-------DKYRLDL 262 (514)
T ss_dssp CSTTTTTHHHHHTCSCCCEESSSSCCC----CC---CCSSCCCCTTCCBCTTSCBCCEEEECSSTT-------HHHHHHH
T ss_pred CHHHHHHHHHHcCCCcccEECCCCeEEEEEEHH---HHHHHhhCcchhcccCCceeeeeEecCchh-------hHHHHHH
Confidence 445677788888999999998543211110000 111111100 0122344444432221 3577999
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
+.++|++.|.+++..-. + .+. ++.++++.+.++ +..++.-+
T Consensus 263 ~~~aG~d~v~i~~~~G~-~-~~~-------~~~i~~i~~~~~-~~pvi~~~----------------------------- 303 (514)
T 1jcn_A 263 LTQAGVDVIVLDSSQGN-S-VYQ-------IAMVHYIKQKYP-HLQVIGGN----------------------------- 303 (514)
T ss_dssp HHHTTCSEEEECCSCCC-S-HHH-------HHHHHHHHHHCT-TCEEEEEE-----------------------------
T ss_pred HHHcCCCEEEeeccCCc-c-hhH-------HHHHHHHHHhCC-CCceEecc-----------------------------
Confidence 99999999999765432 1 121 478899999884 22333111
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCC-----------CCCCCCCCHHHHHHHHhhCCCcEEEecCC
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDC-----------DGQGKGFDMDLIKLISDAVSIPVIASSGA 531 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~-----------dG~~~G~d~~li~~l~~~~~ipVIasGGi 531 (578)
+...+.++.+.+.|++.|.+ .... .|..++..+.+++++++.+++|||++|||
T Consensus 304 ---------------v~t~~~a~~l~~aGad~I~v-g~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI 367 (514)
T 1jcn_A 304 ---------------VVTAAQAKNLIDAGVDGLRV-GMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGI 367 (514)
T ss_dssp ---------------ECSHHHHHHHHHHTCSEEEE-CSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCC
T ss_pred ---------------cchHHHHHHHHHcCCCEEEE-CCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCC
Confidence 12256799999999999988 3211 12223446788899988889999999999
Q ss_pred CCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 532 GAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 532 ~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
++.+|+.+++. .||++|++|++|...
T Consensus 368 ~~~~di~kala-~GAd~V~iG~~~l~~ 393 (514)
T 1jcn_A 368 QTVGHVVKALA-LGASTVMMGSLLAAT 393 (514)
T ss_dssp CSHHHHHHHHH-TTCSEEEESTTTTTS
T ss_pred CCHHHHHHHHH-cCCCeeeECHHHHcC
Confidence 99999999996 999999999988653
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=4.1e-07 Score=89.58 Aligned_cols=195 Identities=15% Similarity=0.129 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
...++++.+.+.|+|-|-+ =.+ .+. .-..-+++++++++ +.+||.+=++..+. + +.|
T Consensus 21 ~t~~~~~~l~~~GaD~iel-G~S---~Gv-t~~~~~~~v~~ir~-~~~Pivlm~y~~n~-------------i----~~G 77 (240)
T 1viz_A 21 LPDEQLEILCESGTDAVII-GGS---DGV-TEDNVLRMMSKVRR-FLVPCVLEVSAIEA-------------I----VPG 77 (240)
T ss_dssp CCHHHHHHHHTSCCSEEEE-CC--------CHHHHHHHHHHHTT-SSSCEEEECSCGGG-------------C----CSC
T ss_pred ccHHHHHHHHHcCCCEEEE-CCC---CCC-CHHHHHHHHHHhhC-cCCCEEEecCcccc-------------c----cCC
Confidence 4467899999999996554 222 121 22346788999988 89999887776332 1 579
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCC-----CCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG-----NQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
+|.+++=+....+.++|.. ..-.++.++|| -+.|--+.-+- +|. -+.++++
T Consensus 78 ~dg~iiPdLp~ee~~~~~~-------g~~~~a~~~~g~~~~~l~~i~~gy~l~-----~P~---~~~~rl~--------- 133 (240)
T 1viz_A 78 FDLYFIPSVLNSKNADWIV-------GMHQKAMKEYGELMSMEEIVAEGYCIA-----NPD---CKAAALT--------- 133 (240)
T ss_dssp CSEEEEEEETTBSSGGGTT-------HHHHHHHHHCHHHHHHSCEEEEEEEEC-----CTT---SHHHHHT---------
T ss_pred CCEEEEcccCcccChhhhc-------chhHHHHHHcCCCCcceeeeecccEEE-----CCC---CceEEee---------
Confidence 9999997766664433310 11145568887 44333111110 010 0001110
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCC---cEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGA---GEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~---~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~ 538 (578)
.+ ....++. .++.+.+.|. -.+++++- .|+ +.+.++++++++.+ ++|++++|||+++++++
T Consensus 134 -------~~---d~~~~~~-~~~~~a~~g~~~~~~~VYl~s--~G~--~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~ 198 (240)
T 1viz_A 134 -------EA---DADLNMD-DIVAYARVSELLQLPIFYLEY--SGV--LGDIEAVKKTKAVLETSTLFYGGGIKDAETAK 198 (240)
T ss_dssp -------TB---CCCCCHH-HHHHHHHHHHHTTCSEEEEEC--TTS--CCCHHHHHHHHHTCSSSEEEEESSCCSHHHHH
T ss_pred -------cc---CCCCCHH-HHHHHHHhCcccCCCEEEEeC--CCc--cChHHHHHHHHHhcCCCCEEEEeccCCHHHHH
Confidence 00 0011233 5566665552 24556654 354 67999999999999 99999999999999999
Q ss_pred HHHHhcCchHHhhhhhhccCCC-CHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHRKEV-PIQSVK 566 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~~~~-~~~~~~ 566 (578)
+++ + ||++|+|||++.+.+- -+++++
T Consensus 199 ~~~-~-gAd~VIVGSa~v~~~~~~~~~v~ 225 (240)
T 1viz_A 199 QYA-E-HADVIVVGNAVYEDFDRALKTVA 225 (240)
T ss_dssp HHH-T-TCSEEEECTHHHHCHHHHHTHHH
T ss_pred HHH-h-CCCEEEEChHHHhCHHHHHHHHH
Confidence 987 4 9999999999997754 344443
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.9e-07 Score=89.38 Aligned_cols=187 Identities=15% Similarity=0.136 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
...++++.+.+.|+|-|.+ =.+ .+. ....-+++++++++ ..+|+.+=++-.+. + ++|
T Consensus 21 ~t~~~~~~l~~~GaD~Iel-G~S---~g~-t~~~~~~~v~~ir~-~~~Pivl~~y~~n~-------------i----~~g 77 (234)
T 2f6u_A 21 NTDEIIKAVADSGTDAVMI-SGT---QNV-TYEKARTLIEKVSQ-YGLPIVVEPSDPSN-------------V----VYD 77 (234)
T ss_dssp CCHHHHHHHHTTTCSEEEE-CCC---TTC-CHHHHHHHHHHHTT-SCCCEEECCSSCCC-------------C----CCC
T ss_pred ccHHHHHHHHHcCCCEEEE-CCC---CCC-CHHHHHHHHHHhcC-CCCCEEEecCCcch-------------h----hcC
Confidence 4467889999999996654 222 221 22456788889887 78999886666321 2 679
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHH-------HhCC-----CCeEEEEEeccccccCCCCccccceeeeccC
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS-------RVYG-----NQAVVVSIDPRRVYITHPNDVEFKAVRVTDL 455 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~g-----~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~ 455 (578)
+|.+++=....++.++|.- ..-.+++ ++|| -+.|..+-=+ .+|. -+.+|++
T Consensus 78 vDg~iipdLp~ee~~~~~~-------g~~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil-----~~P~---~~~~rl~-- 140 (234)
T 2f6u_A 78 VDYLFVPTVLNSADGDWIT-------GKHAQWVRMHYENLQKFTEIIESEFIQIEGYIV-----LNPD---SAVARVT-- 140 (234)
T ss_dssp SSEEEEEEETTBSBGGGTT-------HHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEE-----CCTT---SHHHHHT--
T ss_pred CCEEEEcccCCCCCHHHHh-------hhHHHHHHhhhhhHHHcCCcccceeeeecceEE-----ECCC---CceEEee--
Confidence 9999997777766555530 1222333 5566 4444321100 0110 0112221
Q ss_pred CCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCc----EEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecC
Q 045794 456 GPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAG----EILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSG 530 (578)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~----~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGG 530 (578)
.+.- ..++ +.++.+.+.|.+ ++++++. .| .+.+.++++++++.+ ++|++++||
T Consensus 141 ---------------~g~~--~~~~-e~~~~~a~~g~~~l~~~~Vyl~~--~G--~~~~~~~i~~i~~~~~~~Pv~vGgG 198 (234)
T 2f6u_A 141 ---------------KALC--NIDK-ELAASYALVGEKLFNLPIIYIEY--SG--TYGNPELVAEVKKVLDKARLFYGGG 198 (234)
T ss_dssp ---------------TBCC--CCCH-HHHHHHHHHHHHTTCCSEEEEEC--TT--SCCCHHHHHHHHHHCSSSEEEEESC
T ss_pred ---------------cCCC--CCCH-HHHHHHHHhhhhhcCCCEEEEeC--CC--CcchHHHHHHHHHhCCCCCEEEEec
Confidence 0011 1244 677777777651 5677765 34 367999999999999 999999999
Q ss_pred CCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 531 AGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 531 i~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
|+++++++++++ ||++|+|||+++..
T Consensus 199 I~s~e~a~~~~~--gAd~VIVGSa~v~~ 224 (234)
T 2f6u_A 199 IDSREKAREMLR--YADTIIVGNVIYEK 224 (234)
T ss_dssp CCSHHHHHHHHH--HSSEEEECHHHHHH
T ss_pred CCCHHHHHHHHh--CCCEEEEChHHHhC
Confidence 999999999984 99999999999864
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-06 Score=84.73 Aligned_cols=176 Identities=16% Similarity=0.210 Sum_probs=125.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.||.++|+.| +.||.-|.|+ |-+-+.+ .++.++++++.+.+||- |. | ||.-..+ +.+...
T Consensus 64 ~dp~~iA~~~-~~GA~aiSVLTd~~~F~G-------s~~~L~~vr~~v~lPvL-----rK--D---Fiid~yQ-I~eAr~ 124 (258)
T 4a29_A 64 RDPIEYAKFM-ERYAVGLSITTEEKYFNG-------SYETLRKIASSVSIPIL-----MS--D---FIVKESQ-IDDAYN 124 (258)
T ss_dssp CCHHHHHHHH-TTTCSEEEEECCSTTTCC-------CHHHHHHHHTTCSSCEE-----EE--S---CCCSHHH-HHHHHH
T ss_pred CCHHHHHHHH-hCCCeEEEEeCCCCCCCC-------CHHHHHHHHHhcCCCEe-----ec--c---ccccHHH-HHHHHH
Confidence 4899999855 5899998874 5555422 25777888888999994 32 2 4444333 556667
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|||.|.+=.+++.+ .++ .-+-+.+...|-+.++ . |
T Consensus 125 ~GADaILLI~a~L~~-~~l---------~~l~~~A~~lGl~~Lv---E------------------V------------- 160 (258)
T 4a29_A 125 LGADTVLLIVKILTE-REL---------ESLLEYARSYGMEPLI---L------------------I------------- 160 (258)
T ss_dssp HTCSEEEEEGGGSCH-HHH---------HHHHHHHHHTTCCCEE---E------------------E-------------
T ss_pred cCCCeeehHHhhcCH-HHH---------HHHHHHHHHHhHHHHH---h------------------c-------------
Confidence 899999887777763 222 2344566778865322 1 1
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRK 543 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~ 543 (578)
+ + .+-++++.+.|++-|-+++++-. --..|++...++.... ++.+|+.+||.+++|+.++.+
T Consensus 161 ----h--------~-~~El~rAl~~~a~iIGINNRnL~--tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~- 224 (258)
T 4a29_A 161 ----N--------D-ENDLDIALRIGARFIGIMSRDFE--TGEINKENQRKLISMIPSNVVKVAKLGISERNEIEELRK- 224 (258)
T ss_dssp ----S--------S-HHHHHHHHHTTCSEEEECSBCTT--TCCBCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHH-
T ss_pred ----c--------h-HHHHHHHhcCCCcEEEEeCCCcc--ccccCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHH-
Confidence 0 1 34466677889998878877653 2246899888988776 578899999999999999985
Q ss_pred cCchHHhhhhhhccCCCC
Q 045794 544 TNASAALAAGIFHRKEVP 561 (578)
Q Consensus 544 ~G~~gv~vgsa~~~~~~~ 561 (578)
.|++|++||.++...+-.
T Consensus 225 ~G~~a~LVGealmr~~d~ 242 (258)
T 4a29_A 225 LGVNAFLISSSLMRNPEK 242 (258)
T ss_dssp TTCCEEEECHHHHHCTTH
T ss_pred CCCCEEEECHHHhCCCcH
Confidence 999999999999987643
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-06 Score=84.30 Aligned_cols=77 Identities=25% Similarity=0.249 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCCC---CCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 482 ELAKAVEDLGAGEILLNCIDCDGQGK---GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 482 e~~~~~~~~G~~~ii~tdi~~dG~~~---G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+.++++.+.|++.|++..+-...+.. ..+++.++++++..++||++.||| +++++.++++ .|+++|.+||++...
T Consensus 121 ~~~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~-~Ga~gv~vgs~i~~~ 198 (221)
T 1yad_A 121 EEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQ-AGADGIAVMSGIFSS 198 (221)
T ss_dssp HHHHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHH-TTCSEEEESHHHHTS
T ss_pred HHHHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHH-cCCCEEEEhHHhhCC
Confidence 34677788999999986652222222 357899999988889999999999 9999999996 899999999999865
Q ss_pred CC
Q 045794 559 EV 560 (578)
Q Consensus 559 ~~ 560 (578)
+.
T Consensus 199 ~d 200 (221)
T 1yad_A 199 AE 200 (221)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.7e-07 Score=94.63 Aligned_cols=94 Identities=11% Similarity=0.098 Sum_probs=73.8
Q ss_pred HHHHHHHHHHcCCcEEEEeccC-----CC--------------CCCCCC-----CHHHHHHHHhhC--CCcEEEecCCCC
Q 045794 480 AYELAKAVEDLGAGEILLNCID-----CD--------------GQGKGF-----DMDLIKLISDAV--SIPVIASSGAGA 533 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~-----~d--------------G~~~G~-----d~~li~~l~~~~--~ipVIasGGi~s 533 (578)
..++++.+++.|++.|++++.. .+ |-++|. .++.++++++.+ ++|||++|||.+
T Consensus 174 ~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~ 253 (311)
T 1jub_A 174 FDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIET 253 (311)
T ss_dssp HHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCS
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 4567999999999999988643 11 112242 378999999998 899999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhcc-CCCCHHHHHH----HHHhCCC
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHR-KEVPIQSVKE----HLYKEGI 574 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~-~~~~~~~~~~----~l~~~~i 574 (578)
.+|+.+++. .||++|++|+++.. ++..+.++++ +|...|+
T Consensus 254 ~~da~~~l~-~GAd~V~vg~~~l~~~p~~~~~i~~~l~~~l~~~g~ 298 (311)
T 1jub_A 254 GQDAFEHLL-CGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGY 298 (311)
T ss_dssp HHHHHHHHH-HTCSEEEECHHHHHHCTHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHH-cCCCEEEEchHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 999999985 89999999999985 8877755554 4554454
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=6e-08 Score=95.71 Aligned_cols=117 Identities=22% Similarity=0.264 Sum_probs=91.1
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccC---CCCCHHHHHHHHHHcCCcEEEEeccCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREG---RPIGAYELAKAVEDLGAGEILLNCIDC 502 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~e~~~~~~~~G~~~ii~tdi~~ 502 (578)
.+|+.+||++++. +..++||... ..-++.+.++.+++.|++.+.+++.+.
T Consensus 5 ~~iip~id~~~g~---------------------------~~~v~g~~~~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~ 57 (253)
T 1h5y_A 5 LRIIPCLDIDGGA---------------------------KVVVKGVNFQGIREVGDPVEMAVRYEEEGADEIAILDITA 57 (253)
T ss_dssp CEEEEEEEECGGG---------------------------CEECTTCCCHHHHEEECHHHHHHHHHHTTCSCEEEEECCC
T ss_pred cEEEEEEEEcCCc---------------------------eEEEEcccccceeecccHHHHHHHHHHcCCCEEEEEeCCc
Confidence 5899999998761 1223554321 123689999999999999999999877
Q ss_pred CCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 503 DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 503 dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.+...+.+++.++++++.+++|++++||+.+++++.++++ .||++|++++.+...+..+.++.+.+.
T Consensus 58 ~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~-~Gad~V~i~~~~~~~~~~~~~~~~~~g 124 (253)
T 1h5y_A 58 APEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFR-AGADKVSVNTAAVRNPQLVALLAREFG 124 (253)
T ss_dssp CTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH-HTCSEEEESHHHHHCTHHHHHHHHHHC
T ss_pred cccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCCEEEEChHHhhCcHHHHHHHHHcC
Confidence 6655556788999999999999999999999999999986 899999999988766544555444443
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=98.51 E-value=3.2e-07 Score=89.40 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=119.8
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
+.++...+.|+|.|.+ .+..+ .......++++++++ +.+|+.+= |.... +..|||
T Consensus 22 ~~~~~~~~~GtD~i~v---GGs~g--vt~~~~~~~v~~ik~-~~~Pvvlfp~~~~~------------------v~~gaD 77 (228)
T 3vzx_A 22 EQLEILCESGTDAVII---GGSDG--VTEDNVLRMMSKVRR-FLVPCVLEVSAIEA------------------IVPGFD 77 (228)
T ss_dssp THHHHHHTSSCSEEEE---CCCSC--CCHHHHHHHHHHHTT-SSSCEEEECSCGGG------------------CCSCCS
T ss_pred HHHHHHHHcCCCEEEE---CCcCC--CCHHHHHHHHHHhhc-cCCCEEEeCCCHHH------------------ccccCC
Confidence 4556667889997764 22211 112456788888887 89998764 33322 236999
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHHHhCCC----CeEEE----EEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN----QAVVV----SIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~iv~----slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
.+.+=+..-.++++|+- ..-.++.++||- ..++. -++... ++=+++
T Consensus 78 ~~l~pslln~~~~~~i~-------g~~~~a~~~~g~~~~~~e~i~~gYivv~p~s-----------~~~~~~-------- 131 (228)
T 3vzx_A 78 LYFIPSVLNSKNADWIV-------GMHQKAMKEYGELMSMEEIVAEGYCIANPDC-----------KAAALT-------- 131 (228)
T ss_dssp EEEEEEETTBSSGGGTT-------HHHHHHHHHHHHHHHHSCEEEEEEEECCSSS-----------HHHHHT--------
T ss_pred EEEEeeecCCCCcchhh-------hHHHHHHHHcCCCCcccceeeeEEEEECCCC-----------cceeee--------
Confidence 99987766666555531 222344577873 12333 121100 000000
Q ss_pred cceEEEEEcccccCCCCCH---HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHH
Q 045794 462 YAWYQCTVNGGREGRPIGA---YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHF 537 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~---~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi 537 (578)
...+..++ ...+...+-+|.. +++++- .|+. | |.++++++++.+ ++||+++|||+++|++
T Consensus 132 -----------~a~~~~~~e~~~~~a~~a~~~g~~-~VYld~--sG~~-~-~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a 195 (228)
T 3vzx_A 132 -----------EADADLNMDDIVAYARVSELLQLP-IFYLEY--SGVL-G-DIEAVKKTKAVLETSTLFYGGGIKDAETA 195 (228)
T ss_dssp -----------TBCCCCCHHHHHHHHHHHHHTTCS-EEEEEC--TTSC-C-CHHHHHHHHHHCSSSEEEEESSCCSHHHH
T ss_pred -----------cccCCCCHHHHHHHHHHHHHcCCC-EEEecC--CCCc-C-CHHHHHHHHHhcCCCCEEEeCCCCCHHHH
Confidence 00112233 3344444445554 667766 4542 3 999999999999 7999999999999999
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
++++ .||++|+|||++..++-.+.++.+.+++
T Consensus 196 ~~~~--~gAD~VVVGSa~v~~p~~~~~~v~a~~~ 227 (228)
T 3vzx_A 196 KQYA--EHADVIVVGNAVYEDFDRALKTVAAVKG 227 (228)
T ss_dssp HHHH--TTCSEEEECTHHHHCHHHHHHHHHHHHC
T ss_pred HHHH--hCCCEEEEChHHhcCHHHHHHHHHHHhc
Confidence 9997 4999999999999876555555555543
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.49 E-value=9.3e-07 Score=86.55 Aligned_cols=191 Identities=17% Similarity=0.144 Sum_probs=120.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+..+.++.+.+.|++.+|+-..|+..-... ..-.+.++++++.++.|+.++--+.+. .+.++.+.++|
T Consensus 24 ~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~--~~~~~~i~~l~~~~~~~~~v~l~vnd~----------~~~v~~~~~~G 91 (230)
T 1rpx_A 24 KLGEQVKAIEQAGCDWIHVDVMDGRFVPNI--TIGPLVVDSLRPITDLPLDVHLMIVEP----------DQRVPDFIKAG 91 (230)
T ss_dssp GHHHHHHHHHHTTCCCEEEEEEBSSSSSCB--CCCHHHHHHHGGGCCSCEEEEEESSSH----------HHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCEEEEeeccCCccccc--ccCHHHHHHHHhccCCcEEEEEEecCH----------HHHHHHHHHcC
Confidence 556788888899999999865454210000 112688999988777788776555543 24688899999
Q ss_pred cceeecchh--hhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 388 ADKISIGSD--AVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 388 a~~vv~gt~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|.|.+... ..... .+.++.+ +.+| -++.+++-...
T Consensus 92 ad~v~vh~~~~~~~~~-----------~~~~~~~-~~~g-~~ig~~~~p~t----------------------------- 129 (230)
T 1rpx_A 92 ADIVSVHCEQSSTIHL-----------HRTINQI-KSLG-AKAGVVLNPGT----------------------------- 129 (230)
T ss_dssp CSEEEEECSTTTCSCH-----------HHHHHHH-HHTT-SEEEEEECTTC-----------------------------
T ss_pred CCEEEEEecCccchhH-----------HHHHHHH-HHcC-CcEEEEeCCCC-----------------------------
Confidence 999988755 33211 1345555 3455 34555542110
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCC---HHHHHHHHhhC-----CCcEEEecCCCCHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFD---MDLIKLISDAV-----SIPVIASSGAGAVEHF 537 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d---~~li~~l~~~~-----~ipVIasGGi~s~eDi 537 (578)
. .+.++.+ ..+++.|++..+...+..+-++ ++.++++++.+ ++|+++.|||+ ++.+
T Consensus 130 -----------~---~e~~~~~-~~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~ 193 (230)
T 1rpx_A 130 -----------P---LTAIEYV-LDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNA 193 (230)
T ss_dssp -----------C---GGGGTTT-TTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTH
T ss_pred -----------C---HHHHHHH-HhhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHH
Confidence 0 1111111 2468888777665433333334 35566666655 78999999997 7999
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.++.+ .|+++++|||++...+- +.+..+.|+
T Consensus 194 ~~~~~-aGad~vvvgSaI~~a~d-p~~a~~~l~ 224 (230)
T 1rpx_A 194 YKVIE-AGANALVAGSAVFGAPD-YAEAIKGIK 224 (230)
T ss_dssp HHHHH-HTCCEEEESHHHHTSSC-HHHHHHHHH
T ss_pred HHHHH-cCCCEEEEChhhhCCCC-HHHHHHHHH
Confidence 99875 89999999999987654 444444444
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=3.3e-07 Score=89.93 Aligned_cols=80 Identities=16% Similarity=0.302 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
...+++++++|++.+.-... --|+..|. |+++++.+.+..++|||+.|||++++|+.++++ .||+||++||+++...
T Consensus 146 ~~~akrl~~~G~~aVmPlg~-pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~Ame-LGAdgVlVgSAI~~a~ 223 (265)
T 1wv2_A 146 PIIARQLAEIGCIAVMPLAG-LIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAME-LGCEAVLMNTAIAHAK 223 (265)
T ss_dssp HHHHHHHHHSCCSEEEECSS-STTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHH-HTCSEEEESHHHHTSS
T ss_pred HHHHHHHHHhCCCEEEeCCc-cCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHH-cCCCEEEEChHHhCCC
Confidence 67999999999998854332 35777787 999999999999999999999999999999996 9999999999999765
Q ss_pred CCH
Q 045794 560 VPI 562 (578)
Q Consensus 560 ~~~ 562 (578)
.+.
T Consensus 224 dP~ 226 (265)
T 1wv2_A 224 DPV 226 (265)
T ss_dssp SHH
T ss_pred CHH
Confidence 544
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=8.1e-07 Score=89.32 Aligned_cols=152 Identities=14% Similarity=0.151 Sum_probs=98.3
Q ss_pred HHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHh
Q 045794 343 LQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRV 422 (578)
Q Consensus 343 ~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (578)
+++++++++.+.+||.+=+-.+. .++|+..+-++.+.++|+|.+++.-...+.. +.+.+..++
T Consensus 80 ~~~v~~ir~~~~~Pii~m~y~n~-----v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~------------~~~~~~~~~ 142 (271)
T 1ujp_A 80 LELVREVRALTEKPLFLMTYLNP-----VLAWGPERFFGLFKQAGATGVILPDLPPDED------------PGLVRLAQE 142 (271)
T ss_dssp HHHHHHHHHHCCSCEEEECCHHH-----HHHHCHHHHHHHHHHHTCCEEECTTCCGGGC------------HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEecCcH-----HHHhhHHHHHHHHHHcCCCEEEecCCCHHHH------------HHHHHHHHH
Confidence 57799998888899865221121 3566777889999999999888765544422 223445566
Q ss_pred CCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC-
Q 045794 423 YGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID- 501 (578)
Q Consensus 423 ~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~- 501 (578)
+|-+ .+.-+- ..+..+-++.+.+.+.+.+.+....
T Consensus 143 ~gl~-~i~lia-------------------------------------------p~s~~eri~~ia~~~~gfiy~vs~~G 178 (271)
T 1ujp_A 143 IGLE-TVFLLA-------------------------------------------PTSTDARIATVVRHATGFVYAVSVTG 178 (271)
T ss_dssp HTCE-EECEEC-------------------------------------------TTCCHHHHHHHHTTCCSCEEEECC--
T ss_pred cCCc-eEEEeC-------------------------------------------CCCCHHHHHHHHHhCCCCEEEEecCc
Confidence 7643 222110 1122455566666665544333211
Q ss_pred CCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 502 CDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 502 ~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
..|..++ ...++++++++.+++||+++|||+++++++++ .++|||+|||++...
T Consensus 179 ~TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~---~~ADgVIVGSAi~~~ 235 (271)
T 1ujp_A 179 VTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA---AVADGVVVGSALVRA 235 (271)
T ss_dssp ----------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH---TTSSEEEECHHHHHH
T ss_pred ccCCCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh---cCCCEEEEChHHhcc
Confidence 2233232 34689999999889999999999999999997 589999999999754
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=6.8e-07 Score=92.77 Aligned_cols=150 Identities=15% Similarity=0.242 Sum_probs=101.4
Q ss_pred hHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC--cceeecchhhhccchhhhhccccCCchHHHHH
Q 045794 342 MLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG--ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQI 419 (578)
Q Consensus 342 ~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G--a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~ 419 (578)
..+.|+++.+ .+.|+.+.-|.+. + .++.++.+.+.| ++.+.++... -++. . .++.++++
T Consensus 83 ~~~~i~~~~~-~g~~v~v~~g~~~-~--------~~~~a~~~~~~g~~~~~i~i~~~~-G~~~-~-------~~~~i~~l 143 (336)
T 1ypf_A 83 RISFIRDMQS-RGLIASISVGVKE-D--------EYEFVQQLAAEHLTPEYITIDIAH-GHSN-A-------VINMIQHI 143 (336)
T ss_dssp HHHHHHHHHH-TTCCCEEEECCSH-H--------HHHHHHHHHHTTCCCSEEEEECSS-CCSH-H-------HHHHHHHH
T ss_pred HHHHHHHHHh-cCCeEEEeCCCCH-H--------HHHHHHHHHhcCCCCCEEEEECCC-CCcH-H-------HHHHHHHH
Confidence 4566777654 2445544423322 1 146688899999 8888776522 1211 1 24788999
Q ss_pred HHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEec
Q 045794 420 SRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNC 499 (578)
Q Consensus 420 ~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~td 499 (578)
.+.++. .+++. | .+...+.++.+.+.|++.|++.+
T Consensus 144 r~~~~~-~~vi~---------------------------------------G-----~v~s~e~A~~a~~aGad~Ivvs~ 178 (336)
T 1ypf_A 144 KKHLPE-SFVIA---------------------------------------G-----NVGTPEAVRELENAGADATKVGI 178 (336)
T ss_dssp HHHCTT-SEEEE---------------------------------------E-----EECSHHHHHHHHHHTCSEEEECS
T ss_pred HHhCCC-CEEEE---------------------------------------C-----CcCCHHHHHHHHHcCCCEEEEec
Confidence 888842 23320 1 01225789999999999999832
Q ss_pred cC---------CCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 500 ID---------CDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 500 i~---------~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
-. ..+...|..++.+.++++.+++|||++|||++.+|+.+++. +||++|++|+++.
T Consensus 179 hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kala-lGAdaV~iGr~~l 243 (336)
T 1ypf_A 179 GPGKVCITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSIR-FGATMVMIGSLFA 243 (336)
T ss_dssp SCSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHH-TTCSEEEESGGGT
T ss_pred CCCceeecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHH-cCCCEEEeChhhh
Confidence 10 00001122688999999988999999999999999999996 9999999999998
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.6e-07 Score=85.19 Aligned_cols=186 Identities=19% Similarity=0.103 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+-+++++.+.+ |++.+++-+=--...+ .+.|+++++.+ +.|+.++-++.+..+ ..++.+.++
T Consensus 14 ~~~~~~~~~~~-~v~~iev~~~~~~~~g-------~~~i~~l~~~~~~~~i~~~l~~~di~~---------~~~~~a~~~ 76 (207)
T 3ajx_A 14 AALELAGKVAE-YVDIIELGTPLIKAEG-------LSVITAVKKAHPDKIVFADMKTMDAGE---------LEADIAFKA 76 (207)
T ss_dssp HHHHHHHHHGG-GCSEEEECHHHHHHHC-------THHHHHHHHHSTTSEEEEEEEECSCHH---------HHHHHHHHT
T ss_pred HHHHHHHHhhc-cCCEEEECcHHHHhhC-------HHHHHHHHHhCCCCeEEEEEEecCccH---------HHHHHHHhC
Confidence 44566666655 7898888441101011 36788888776 788888766665211 237889999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|||.|.+--..-... .+.+.+..+++|.. + .+++..
T Consensus 77 Gad~v~vh~~~~~~~-----------~~~~~~~~~~~g~~-~--gv~~~s------------------------------ 112 (207)
T 3ajx_A 77 GADLVTVLGSADDST-----------IAGAVKAAQAHNKG-V--VVDLIG------------------------------ 112 (207)
T ss_dssp TCSEEEEETTSCHHH-----------HHHHHHHHHHHTCE-E--EEECTT------------------------------
T ss_pred CCCEEEEeccCChHH-----------HHHHHHHHHHcCCc-e--EEEEec------------------------------
Confidence 999998732221100 12233444556632 3 333211
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEE-EEeccCCCCCCCCCCH--HHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEI-LLNCIDCDGQGKGFDM--DLIKLISDAVSIPVIASSGAGAVEHFSDVFRK 543 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~i-i~tdi~~dG~~~G~d~--~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~ 543 (578)
--++.+.++.+.+.|++.+ +....+. ...|.++ +.++++... ++|+++.|||+ ++.+.++++
T Consensus 113 ----------~~~p~~~~~~~~~~g~d~v~~~~~~~~--~~~g~~~~~~~i~~~~~~-~~pi~v~GGI~-~~~~~~~~~- 177 (207)
T 3ajx_A 113 ----------IEDKATRAQEVRALGAKFVEMHAGLDE--QAKPGFDLNGLLAAGEKA-RVPFSVAGGVK-VATIPAVQK- 177 (207)
T ss_dssp ----------CSSHHHHHHHHHHTTCSEEEEECCHHH--HTSTTCCTHHHHHHHHHH-TSCEEEESSCC-GGGHHHHHH-
T ss_pred ----------CCChHHHHHHHHHhCCCEEEEEecccc--cccCCCchHHHHHHhhCC-CCCEEEECCcC-HHHHHHHHH-
Confidence 0134566677778899998 6554431 1122222 555555543 78999999997 889999985
Q ss_pred cCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 544 TNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 544 ~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.|++++++||++.+.+- +.+..+.++
T Consensus 178 aGad~vvvGsaI~~~~d-p~~~~~~~~ 203 (207)
T 3ajx_A 178 AGAEVAVAGGAIYGAAD-PAAAAKELR 203 (207)
T ss_dssp TTCSEEEESHHHHTSSS-HHHHHHHHH
T ss_pred cCCCEEEEeeeccCCCC-HHHHHHHHH
Confidence 99999999999987654 444444443
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-05 Score=77.83 Aligned_cols=159 Identities=13% Similarity=0.134 Sum_probs=110.0
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+.+++++.+.+.|++.|-+-. .. ....+.|+++.+ -.+.+.+|- +-+. +.++..+++
T Consensus 25 ~~~~~~~~~l~~gGv~~iel~~-k~--------~~~~~~i~~~~~-~~~~~gag~-vl~~-----------d~~~~A~~~ 82 (207)
T 2yw3_A 25 EDLLGLARVLEEEGVGALEITL-RT--------EKGLEALKALRK-SGLLLGAGT-VRSP-----------KEAEAALEA 82 (207)
T ss_dssp CCHHHHHHHHHHTTCCEEEEEC-SS--------THHHHHHHHHTT-SSCEEEEES-CCSH-----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeC-CC--------hHHHHHHHHHhC-CCCEEEeCe-EeeH-----------HHHHHHHHc
Confidence 4778999999999999777542 11 233677888877 444443333 3232 569999999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
||+.|+.+. .+ ++.+ +..+++|... +..+.
T Consensus 83 GAd~v~~~~---~d------------~~v~-~~~~~~g~~~-i~G~~--------------------------------- 112 (207)
T 2yw3_A 83 GAAFLVSPG---LL------------EEVA-ALAQARGVPY-LPGVL--------------------------------- 112 (207)
T ss_dssp TCSEEEESS---CC------------HHHH-HHHHHHTCCE-EEEEC---------------------------------
T ss_pred CCCEEEcCC---CC------------HHHH-HHHHHhCCCE-EecCC---------------------------------
Confidence 999998773 21 1333 4455577442 22210
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcC
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTN 545 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G 545 (578)
+ .+-+.++.+.|++.+-++.- ....| ++.++.+++.+ ++|+++.|||. .+++.++++ .|
T Consensus 113 ------------t-~~e~~~A~~~Gad~v~~fpa---~~~gG--~~~lk~l~~~~~~ipvvaiGGI~-~~n~~~~l~-aG 172 (207)
T 2yw3_A 113 ------------T-PTEVERALALGLSALKFFPA---EPFQG--VRVLRAYAEVFPEVRFLPTGGIK-EEHLPHYAA-LP 172 (207)
T ss_dssp ------------S-HHHHHHHHHTTCCEEEETTT---TTTTH--HHHHHHHHHHCTTCEEEEBSSCC-GGGHHHHHT-CS
T ss_pred ------------C-HHHHHHHHHCCCCEEEEecC---ccccC--HHHHHHHHhhCCCCcEEEeCCCC-HHHHHHHHh-CC
Confidence 2 33456677889999988651 11113 57789998888 89999999996 799999995 99
Q ss_pred chHHhhhhhhcc
Q 045794 546 ASAALAAGIFHR 557 (578)
Q Consensus 546 ~~gv~vgsa~~~ 557 (578)
++++.++|++..
T Consensus 173 a~~vavgSai~~ 184 (207)
T 2yw3_A 173 NLLAVGGSWLLQ 184 (207)
T ss_dssp SBSCEEESGGGS
T ss_pred CcEEEEehhhhC
Confidence 999999999987
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=98.41 E-value=8.9e-07 Score=97.92 Aligned_cols=107 Identities=21% Similarity=0.143 Sum_probs=87.5
Q ss_pred eEEEeeeEeec-------------------CCCC-----EEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeE
Q 045794 269 RVIACLDVRAN-------------------DKGD-----LVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEI 324 (578)
Q Consensus 269 riIp~iDl~~~-------------------~~g~-----~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i 324 (578)
+|+.++|.+.. .+|. -|.++||+ ..+. -+++++|+.+.+.|+++|
T Consensus 401 ~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~Gw~----------~~~~-~~~~e~a~~~~~~Ga~~i 469 (555)
T 1jvn_A 401 AVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGR----------ESRD-LGVWELTRACEALGAGEI 469 (555)
T ss_dssp GEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEETTTT----------EEEE-EEHHHHHHHHHHTTCCEE
T ss_pred cEEEEEEccccccccccccccccccccccCCCCCcceeEEEEEecCc----------cCCC-CCHHHHHHHHHHcCCCEE
Confidence 69999999731 1342 35788886 2232 378999999999999999
Q ss_pred EEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH-cCcceeecchhhhcc
Q 045794 325 SFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR-SGADKISIGSDAVYA 400 (578)
Q Consensus 325 ~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~-~Ga~~vv~gt~~~~~ 400 (578)
.+.|+++. ++. .+.|+++|+++++.+.+||++.|||++.+| ++++++ .|++.|++|++....
T Consensus 470 l~t~~~~d--G~~-~G~d~~li~~l~~~~~iPVIasGGi~s~~d-----------~~~~~~~~G~~gvivg~a~~~~ 532 (555)
T 1jvn_A 470 LLNCIDKD--GSN-SGYDLELIEHVKDAVKIPVIASSGAGVPEH-----------FEEAFLKTRADACLGAGMFHRG 532 (555)
T ss_dssp EECCGGGT--TTC-SCCCHHHHHHHHHHCSSCEEECSCCCSHHH-----------HHHHHHHSCCSEEEESHHHHTT
T ss_pred EEeCCCCC--CCC-CCCCHHHHHHHHHhCCccEEEECCCCCHHH-----------HHHHHHhcCChHHHHHHHHHcC
Confidence 99888863 333 367899999999999999999999999977 999998 899999999999874
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.8e-06 Score=84.15 Aligned_cols=83 Identities=22% Similarity=0.372 Sum_probs=63.8
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCC
Q 045794 482 ELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEV 560 (578)
Q Consensus 482 e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~ 560 (578)
+.++++.+.|++.|..... -.|+.+|. +.+.++.+++.+++||++.|||++++|+.++.+ .||+||+|||++....-
T Consensus 138 ~~a~~~~~~gad~v~~~~~-~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~-~GAdgViVGSAi~~a~d 215 (264)
T 1xm3_A 138 VLARKLEELGVHAIMPGAS-PIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAME-LGADGVLLNTAVSGADD 215 (264)
T ss_dssp HHHHHHHHHTCSCBEECSS-STTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTSSS
T ss_pred HHHHHHHHhCCCEEEECCc-ccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHH-cCCCEEEEcHHHhCCCC
Confidence 5678888999998844221 12333443 688999998888999999999999999999985 99999999999986554
Q ss_pred CHHHHH
Q 045794 561 PIQSVK 566 (578)
Q Consensus 561 ~~~~~~ 566 (578)
+...++
T Consensus 216 p~~~~~ 221 (264)
T 1xm3_A 216 PVKMAR 221 (264)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 433333
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-06 Score=89.78 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHcCCcEEEEecc--CCCC---CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC-chHHhhh
Q 045794 479 GAYELAKAVEDLGAGEILLNCI--DCDG---QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTN-ASAALAA 552 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi--~~dG---~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G-~~gv~vg 552 (578)
+..++++.+++.|++.|-++.- .... ...+.++++++++++.+++|||++|||.+++++.++++ .| ||.|++|
T Consensus 240 ~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~-~G~aD~V~iG 318 (349)
T 3hgj_A 240 DTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQ-AGSADLVLLG 318 (349)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHH-TTSCSEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHH-CCCceEEEec
Confidence 3678999999999999988742 1111 12456899999999999999999999999999999997 55 9999999
Q ss_pred hhhccCCCCHHHHHHHHH
Q 045794 553 GIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 553 sa~~~~~~~~~~~~~~l~ 570 (578)
+++..++.-+..+++.|.
T Consensus 319 R~~lanPdl~~k~~~~l~ 336 (349)
T 3hgj_A 319 RVLLRDPYFPLRAAKALG 336 (349)
T ss_dssp THHHHCTTHHHHHHHHTT
T ss_pred HHHHhCchHHHHHHHHCC
Confidence 999998887888877765
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.6e-06 Score=88.46 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCC----CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhh
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDG----QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG----~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa 554 (578)
+..++++.+++.|++.|-+++-.... ...+.++++++++++.+++|||++|||.+++++.++++..+||.|++|++
T Consensus 230 ~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~ 309 (340)
T 3gr7_A 230 DYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFLGRE 309 (340)
T ss_dssp GHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEECHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHH
Confidence 57899999999999999887522111 13456899999999999999999999999999999997334999999999
Q ss_pred hccCCCCHHHHHHHHHh
Q 045794 555 FHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 555 ~~~~~~~~~~~~~~l~~ 571 (578)
+..++.-+..+++.+..
T Consensus 310 ~lanPdl~~ki~~~l~~ 326 (340)
T 3gr7_A 310 LLRNPYWPYAAARELGA 326 (340)
T ss_dssp HHHCTTHHHHHHHHTTC
T ss_pred HHhCchHHHHHHHHCCC
Confidence 99998888888877653
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-06 Score=88.69 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCC----CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhh
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQ----GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~----~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa 554 (578)
+..++++.+++.|++.|-+++.+.+.. ..+.+++.++++++.+++|||++|||.+.+++.++++..+||.|++|++
T Consensus 230 ~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~ 309 (338)
T 1z41_A 230 DHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRE 309 (338)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEeecHH
Confidence 467899999999999999987654322 2245789999999999999999999999999999997434999999999
Q ss_pred hccCCCCHHHHHHHHHh
Q 045794 555 FHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 555 ~~~~~~~~~~~~~~l~~ 571 (578)
+..++..+..+++-+..
T Consensus 310 ~i~nPdl~~ki~~~~~~ 326 (338)
T 1z41_A 310 LLRDPFFARTAAKQLNT 326 (338)
T ss_dssp HHHCTTHHHHHHHHTTC
T ss_pred HHhCchHHHHHHcCCCc
Confidence 99998888888776643
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=98.36 E-value=2.9e-07 Score=96.50 Aligned_cols=95 Identities=18% Similarity=0.269 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCC-------------CCCCCC-----CHHHHHHHHhhC--CCcEEEecCCCCHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCD-------------GQGKGF-----DMDLIKLISDAV--SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~d-------------G~~~G~-----d~~li~~l~~~~--~ipVIasGGi~s~eDi~ 538 (578)
++.++++.+++.|++.|++++.+.. |.++|+ .++.++++++.+ ++|||++|||.+.+|+.
T Consensus 235 ~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~ 314 (367)
T 3zwt_A 235 DKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDAL 314 (367)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHH
Confidence 3678999999999999999976521 334454 358899999999 89999999999999999
Q ss_pred HHHHhcCchHHhhhhhh-ccCCCCHHHHHHH----HHhCCC
Q 045794 539 DVFRKTNASAALAAGIF-HRKEVPIQSVKEH----LYKEGI 574 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~-~~~~~~~~~~~~~----l~~~~i 574 (578)
++++ .||++|++|+++ +.++..+.++++. |...|+
T Consensus 315 ~~l~-~GAd~V~vgra~l~~gP~~~~~i~~~l~~~m~~~G~ 354 (367)
T 3zwt_A 315 EKIR-AGASLVQLYTALTFWGPPVVGKVKRELEALLKEQGF 354 (367)
T ss_dssp HHHH-HTCSEEEESHHHHHHCTHHHHHHHHHHHHHHHHTTC
T ss_pred HHHH-cCCCEEEECHHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 9996 899999999998 6788777666654 444554
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-06 Score=86.94 Aligned_cols=163 Identities=12% Similarity=0.077 Sum_probs=104.7
Q ss_pred HHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHh
Q 045794 343 LQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRV 422 (578)
Q Consensus 343 ~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (578)
++++++++++ +|+.+=+-.+.+. .|.--+=++++.++|+|.+++--...+.. +.+.+.+++
T Consensus 79 ~~~~~~~r~~--~Pivlm~Y~N~i~-----~~G~e~F~~~~~~aGvdG~IipDLP~eE~------------~~~~~~~~~ 139 (252)
T 3tha_A 79 FELLARIKTK--KALVFMVYYNLIF-----SYGLEKFVKKAKSLGICALIVPELSFEES------------DDLIKECER 139 (252)
T ss_dssp HHHHHHCCCS--SEEEEECCHHHHH-----HHCHHHHHHHHHHTTEEEEECTTCCGGGC------------HHHHHHHHH
T ss_pred HHHHHHHhcC--CCEEEEeccCHHH-----HhhHHHHHHHHHHcCCCEEEeCCCCHHHH------------HHHHHHHHH
Confidence 4445555443 7887644333210 01111227888899999999987666542 445677888
Q ss_pred CCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc-C
Q 045794 423 YGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI-D 501 (578)
Q Consensus 423 ~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi-~ 501 (578)
+|-+.|.+.- ..+..+.++++.+.+-+.+-+.+. .
T Consensus 140 ~Gl~~I~lva--------------------------------------------P~t~~eRi~~ia~~a~gFiY~Vs~~G 175 (252)
T 3tha_A 140 YNIALITLVS--------------------------------------------VTTPKERVKKLVKHAKGFIYLLASIG 175 (252)
T ss_dssp TTCEECEEEE--------------------------------------------TTSCHHHHHHHHTTCCSCEEEECCSC
T ss_pred cCCeEEEEeC--------------------------------------------CCCcHHHHHHHHHhCCCeEEEEecCC
Confidence 9865433311 123367888888886555444442 2
Q ss_pred CCCCCCCCC---HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc--CCCCHHHHHHHHH
Q 045794 502 CDGQGKGFD---MDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR--KEVPIQSVKEHLY 570 (578)
Q Consensus 502 ~dG~~~G~d---~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~--~~~~~~~~~~~l~ 570 (578)
..|..++.+ .++++++++.+++||++++||+++++++++.+ ++|||+|||++.+ .....+++.+.++
T Consensus 176 vTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~--~ADGVIVGSAiVk~i~~~~~~~~~~~~~ 247 (252)
T 3tha_A 176 ITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRK--VADGVIVGTSIVKCFKQGNLDIIMKDIE 247 (252)
T ss_dssp SSSCSHHHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHTT--TSSEEEECHHHHHHTTSSCHHHHHHHHH
T ss_pred CCCcccCCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHh--cCCEEEECHHHHHHHHhcCHHHHHHHHH
Confidence 345444432 36888888888999999999999999999863 6999999999964 2224455555443
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-05 Score=79.02 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=112.7
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCc-cccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGI-RDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGi-r~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++++.+.+.|++.+-+- +.. ..-.+.|+++++++. .+.+|.|. -+. ++++..++
T Consensus 29 ~~~~~~~~al~~gGv~~iel~-~k~--------~~~~~~i~~l~~~~~-~l~vgaGtvl~~-----------d~~~~A~~ 87 (224)
T 1vhc_A 29 DDILPLADTLAKNGLSVAEIT-FRS--------EAAADAIRLLRANRP-DFLIAAGTVLTA-----------EQVVLAKS 87 (224)
T ss_dssp GGHHHHHHHHHHTTCCEEEEE-TTS--------TTHHHHHHHHHHHCT-TCEEEEESCCSH-----------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEe-ccC--------chHHHHHHHHHHhCc-CcEEeeCcEeeH-----------HHHHHHHH
Confidence 477899999999999977765 221 123678898888774 45666554 232 56999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|||.|+.+. .+ ++.++.. +++|...++ .+
T Consensus 88 aGAd~v~~p~---~d------------~~v~~~a-r~~g~~~i~-Gv--------------------------------- 117 (224)
T 1vhc_A 88 SGADFVVTPG---LN------------PKIVKLC-QDLNFPITP-GV--------------------------------- 117 (224)
T ss_dssp HTCSEEECSS---CC------------HHHHHHH-HHTTCCEEC-EE---------------------------------
T ss_pred CCCCEEEECC---CC------------HHHHHHH-HHhCCCEEe-cc---------------------------------
Confidence 9999998874 21 2444544 458865332 11
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
.+ .+.+.++.+.|++.|-++.- ....| .+.++.+++.+ ++|+++.||| +++.+.++++ .
T Consensus 118 ------------~t-~~e~~~A~~~Gad~vk~Fpa---~~~gG--~~~lk~l~~~~~~ipvvaiGGI-~~~N~~~~l~-a 177 (224)
T 1vhc_A 118 ------------NN-PMAIEIALEMGISAVKFFPA---EASGG--VKMIKALLGPYAQLQIMPTGGI-GLHNIRDYLA-I 177 (224)
T ss_dssp ------------CS-HHHHHHHHHTTCCEEEETTT---TTTTH--HHHHHHHHTTTTTCEEEEBSSC-CTTTHHHHHT-S
T ss_pred ------------CC-HHHHHHHHHCCCCEEEEeeC---ccccC--HHHHHHHHhhCCCCeEEEECCc-CHHHHHHHHh-c
Confidence 02 33456778999999988661 11112 68899999888 7999999999 6689999996 6
Q ss_pred -CchHHhhhhhhcc
Q 045794 545 -NASAALAAGIFHR 557 (578)
Q Consensus 545 -G~~gv~vgsa~~~ 557 (578)
|++++. ||++..
T Consensus 178 gga~~v~-gS~i~~ 190 (224)
T 1vhc_A 178 PNIVACG-GSWFVE 190 (224)
T ss_dssp TTBCCEE-ECGGGC
T ss_pred CCCEEEE-EchhcC
Confidence 999998 888875
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-06 Score=91.51 Aligned_cols=86 Identities=9% Similarity=-0.009 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+..++++.+++.|++.|.++..+.++. .+..+++++++++.+++|||++||| +.+++.++++..+||+|++|+++..+
T Consensus 251 ~~~~~a~~l~~~G~d~i~v~~~~~~~~-~~~~~~~~~~i~~~~~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~i~~ 328 (365)
T 2gou_A 251 TYTAAAALLNKHRIVYLHIAEVDWDDA-PDTPVSFKRALREAYQGVLIYAGRY-NAEKAEQAINDGLADMIGFGRPFIAN 328 (365)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCBTTBC-CCCCHHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEECCHHHHHC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCC-CCccHHHHHHHHHHCCCcEEEeCCC-CHHHHHHHHHCCCcceehhcHHHHhC
Confidence 356789999999999999987544332 2346889999999999999999999 99999999974459999999999988
Q ss_pred CCCHHHHH
Q 045794 559 EVPIQSVK 566 (578)
Q Consensus 559 ~~~~~~~~ 566 (578)
+..+..++
T Consensus 329 P~l~~~~~ 336 (365)
T 2gou_A 329 PDLPERLR 336 (365)
T ss_dssp TTHHHHHH
T ss_pred chHHHHHH
Confidence 87666665
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=98.34 E-value=8.2e-07 Score=87.63 Aligned_cols=102 Identities=20% Similarity=0.209 Sum_probs=82.2
Q ss_pred eEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH
Q 045794 269 RVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL 348 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~ 348 (578)
+++.++|.+ +|. |.++||. .. ..+++++++.+.+.|++.|.+.+.+.- +. ..+.+++.+++
T Consensus 124 ~~~~~l~~~---~g~-v~~~g~~----------~~--~~~~~e~~~~~~~~G~~~i~~~~~~~~--~~-~~g~~~~~~~~ 184 (244)
T 1vzw_A 124 KIAVGLDVR---GTT-LRGRGWT----------RD--GGDLYETLDRLNKEGCARYVVTDIAKD--GT-LQGPNLELLKN 184 (244)
T ss_dssp GEEEEEEEE---TTE-ECCSSSC----------CC--CCBHHHHHHHHHHTTCCCEEEEEC----------CCCHHHHHH
T ss_pred cEEEEEEcc---CCE-EEEcCcc----------cC--CCCHHHHHHHHHhCCCCEEEEeccCcc--cc-cCCCCHHHHHH
Confidence 567788998 675 4578886 22 238999999999999999999988752 22 23567999999
Q ss_pred HhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc---Ccceeecchhhhcc
Q 045794 349 TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS---GADKISIGSDAVYA 400 (578)
Q Consensus 349 i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~---Ga~~vv~gt~~~~~ 400 (578)
+++.+++||++.|||++.+| +++++++ ||+.|++|++.+.+
T Consensus 185 i~~~~~ipvia~GGI~~~~d-----------~~~~~~~~~~Gadgv~vG~al~~~ 228 (244)
T 1vzw_A 185 VCAATDRPVVASGGVSSLDD-----------LRAIAGLVPAGVEGAIVGKALYAK 228 (244)
T ss_dssp HHHTCSSCEEEESCCCSHHH-----------HHHHHTTGGGTEEEEEECHHHHTT
T ss_pred HHHhcCCCEEEECCCCCHHH-----------HHHHHhhccCCCceeeeeHHHHcC
Confidence 99988999999999999876 9999999 99999999999985
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-06 Score=91.17 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCC-----CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhh
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQ-----GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAG 553 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~-----~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgs 553 (578)
+..++++.+++.|++.|-++.-..... ..+.++++++++++.+++|||++|||.+++++.++++..+||.|++|+
T Consensus 247 ~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR 326 (363)
T 3l5l_A 247 ESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSVGR 326 (363)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEECCH
T ss_pred HHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEEecH
Confidence 467899999999999998886332211 245688999999999999999999999999999999733499999999
Q ss_pred hhccCCCCHHHHHHHHH
Q 045794 554 IFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 554 a~~~~~~~~~~~~~~l~ 570 (578)
++..++.-+..+++.|.
T Consensus 327 ~~lanPdl~~k~~~~lg 343 (363)
T 3l5l_A 327 AHLADPHWAYFAAKELG 343 (363)
T ss_dssp HHHHCTTHHHHHHHHTT
T ss_pred HHHhCchHHHHHHHHcC
Confidence 99998888888887775
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1e-06 Score=90.47 Aligned_cols=91 Identities=11% Similarity=-0.010 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHcC-CcEEEEeccC-----CC--------------CCCCCC-----CHHHHHHHHhhC-CCcEEEecCCC
Q 045794 479 GAYELAKAVEDLG-AGEILLNCID-----CD--------------GQGKGF-----DMDLIKLISDAV-SIPVIASSGAG 532 (578)
Q Consensus 479 ~~~e~~~~~~~~G-~~~ii~tdi~-----~d--------------G~~~G~-----d~~li~~l~~~~-~ipVIasGGi~ 532 (578)
+..++++.+++.| ++.|++++.. .+ |.++|. .++.++++++.+ ++|||++|||.
T Consensus 175 ~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~ 254 (314)
T 2e6f_A 175 HFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVY 254 (314)
T ss_dssp HHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEESSCC
T ss_pred HHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 3566799999999 9999988744 11 112232 378999999998 99999999999
Q ss_pred CHHHHHHHHHhcCchHHhhhhhhcc-CCCCHHHHHHHHH
Q 045794 533 AVEHFSDVFRKTNASAALAAGIFHR-KEVPIQSVKEHLY 570 (578)
Q Consensus 533 s~eDi~~l~~~~G~~gv~vgsa~~~-~~~~~~~~~~~l~ 570 (578)
+.+|+.+++. .||++|++|+++.. ++..+.++++.|+
T Consensus 255 ~~~da~~~l~-~GAd~V~ig~~~l~~~p~~~~~i~~~l~ 292 (314)
T 2e6f_A 255 SGEDAFLHIL-AGASMVQVGTALQEEGPGIFTRLEDELL 292 (314)
T ss_dssp SHHHHHHHHH-HTCSSEEECHHHHHHCTTHHHHHHHHHH
T ss_pred CHHHHHHHHH-cCCCEEEEchhhHhcCcHHHHHHHHHHH
Confidence 9999999985 89999999999985 8887777665443
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=8.8e-07 Score=94.28 Aligned_cols=124 Identities=18% Similarity=0.194 Sum_probs=90.3
Q ss_pred hHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccC
Q 045794 376 SLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDL 455 (578)
Q Consensus 376 ~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~ 455 (578)
..+.++.+++.|++.|.+++..- ++ +++ +++++++.+.+|.-.|++ +
T Consensus 154 ~~~~a~~~~~~G~d~i~i~~~~g-~~-~~~-------~e~i~~ir~~~~~~pviv------~------------------ 200 (404)
T 1eep_A 154 TIERVEELVKAHVDILVIDSAHG-HS-TRI-------IELIKKIKTKYPNLDLIA------G------------------ 200 (404)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCC-SS-HHH-------HHHHHHHHHHCTTCEEEE------E------------------
T ss_pred HHHHHHHHHHCCCCEEEEeCCCC-Ch-HHH-------HHHHHHHHHHCCCCeEEE------c------------------
Confidence 35678899999999999865432 22 222 378888888885333333 0
Q ss_pred CCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCC---------CCCCCCCCHHHHHHHHh---hCCC
Q 045794 456 GPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDC---------DGQGKGFDMDLIKLISD---AVSI 523 (578)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~---------dG~~~G~d~~li~~l~~---~~~i 523 (578)
++...+.++.+.+.|++.|++ .... +| ..+++++.+..+.+ ..++
T Consensus 201 ---------------------~v~~~~~a~~a~~~Gad~I~v-g~~~G~~~~~~~~~~-~g~p~~~~l~~v~~~~~~~~i 257 (404)
T 1eep_A 201 ---------------------NIVTKEAALDLISVGADCLKV-GIGPGSICTTRIVAG-VGVPQITAICDVYEACNNTNI 257 (404)
T ss_dssp ---------------------EECSHHHHHHHHTTTCSEEEE-CSSCSTTSHHHHHHC-CCCCHHHHHHHHHHHHTTSSC
T ss_pred ---------------------CCCcHHHHHHHHhcCCCEEEE-CCCCCcCcCccccCC-CCcchHHHHHHHHHHHhhcCc
Confidence 011257889999999999998 2211 22 23567777777765 4689
Q ss_pred cEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 524 PVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 524 pVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
|||++|||.+.+|+.+++. .||++|++|+++.
T Consensus 258 pVia~GGI~~~~d~~~ala-~GAd~V~iG~~~l 289 (404)
T 1eep_A 258 CIIADGGIRFSGDVVKAIA-AGADSVMIGNLFA 289 (404)
T ss_dssp EEEEESCCCSHHHHHHHHH-HTCSEEEECHHHH
T ss_pred eEEEECCCCCHHHHHHHHH-cCCCHHhhCHHHh
Confidence 9999999999999999996 8999999999983
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-06 Score=91.19 Aligned_cols=92 Identities=12% Similarity=0.076 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHcCCcEEEEec----------cCC----------CCCCCCC-C----HHHHHHHHhhC--CCcEEEecC
Q 045794 478 IGAYELAKAVEDLGAGEILLNC----------IDC----------DGQGKGF-D----MDLIKLISDAV--SIPVIASSG 530 (578)
Q Consensus 478 ~~~~e~~~~~~~~G~~~ii~td----------i~~----------dG~~~G~-d----~~li~~l~~~~--~ipVIasGG 530 (578)
.+..++++.+++.|++.|.++. +++ -|.++|+ . ++.++++++.+ ++|||++||
T Consensus 204 ~~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ipIIg~GG 283 (345)
T 3oix_A 204 FDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGG 283 (345)
T ss_dssp CCHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSEEEEESS
T ss_pred CCHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCcEEEECC
Confidence 4788999999988887653221 221 1234554 2 68899999998 799999999
Q ss_pred CCCHHHHHHHHHhcCchHHhhhhh-hccCCCCHHHHHHHHH
Q 045794 531 AGAVEHFSDVFRKTNASAALAAGI-FHRKEVPIQSVKEHLY 570 (578)
Q Consensus 531 i~s~eDi~~l~~~~G~~gv~vgsa-~~~~~~~~~~~~~~l~ 570 (578)
|.+.+|+.+.+. .||++|++|++ ++.+++.+.++++.|+
T Consensus 284 I~s~~da~~~l~-aGAd~V~igra~~~~gP~~~~~i~~~L~ 323 (345)
T 3oix_A 284 VXTGRDAFEHIL-CGASMVQIGTALHQEGPQIFKRITKELX 323 (345)
T ss_dssp CCSHHHHHHHHH-HTCSEEEESHHHHHHCTHHHHHHHHHHH
T ss_pred CCChHHHHHHHH-hCCCEEEEChHHHhcChHHHHHHHHHHH
Confidence 999999999996 89999999999 7888887766665543
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=92.52 Aligned_cols=87 Identities=13% Similarity=0.057 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+..++++.+++.|++.|-++.....+...+.++++++++++.+++|||++||+ +++++.++++..+||+|++|+++..+
T Consensus 256 ~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~l~~ 334 (377)
T 2r14_A 256 MAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIAN 334 (377)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCC------CCCTTHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHCCCceEEeecHHHHhC
Confidence 35788999999999999988754433333346788999999999999999999 69999999975559999999999998
Q ss_pred CCCHHHHH
Q 045794 559 EVPIQSVK 566 (578)
Q Consensus 559 ~~~~~~~~ 566 (578)
+..+..++
T Consensus 335 P~l~~k~~ 342 (377)
T 2r14_A 335 PDLPERFR 342 (377)
T ss_dssp TTHHHHHH
T ss_pred chHHHHHH
Confidence 87666655
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.8e-06 Score=84.35 Aligned_cols=183 Identities=11% Similarity=0.153 Sum_probs=112.9
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
.+.++...+.|+|.|.+ .+.. +. .....+++++++++ ..+|+.+=-+ +.+. +..|+|
T Consensus 26 ~~~l~~~~~~GtDaI~v---Ggs~-gv-t~~~~~~~v~~ik~-~~~Piil~p~--~~~~---------------~~~gaD 82 (235)
T 3w01_A 26 DDDLDAICMSQTDAIMI---GGTD-DV-TEDNVIHLMSKIRR-YPLPLVLEIS--NIES---------------VMPGFD 82 (235)
T ss_dssp HHHHHHHHTSSCSEEEE---CCSS-CC-CHHHHHHHHHHHTT-SCSCEEEECC--CSTT---------------CCTTCS
T ss_pred HHHHHHHHHcCCCEEEE---CCcC-Cc-CHHHHHHHHHHhcC-cCCCEEEecC--CHHH---------------hhcCCC
Confidence 45666677889997764 2221 11 22456788899888 8999955433 2221 235999
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHHHhCCC-----CeEEE---EEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN-----QAVVV---SIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~iv~---slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
.+.+=+..-.++++|+- ..-.++.++||- +-|.. -++... +.=+++
T Consensus 83 ~il~pslln~~~~~~i~-------g~~~~a~~~~gl~~~~~e~i~~gYivv~p~s-----------~v~~v~-------- 136 (235)
T 3w01_A 83 FYFVPTVLNSTDVAFHN-------GTLLEALKTYGHSIDFEEVIFEGYVVCNADS-----------KVAKHT-------- 136 (235)
T ss_dssp EEEEEEETTBSSGGGTT-------HHHHHHHHHHGGGCCGGGEEEEEEEECCSSS-----------HHHHHT--------
T ss_pred EEEEccccCCCCcchhh-------hHHHHHHHHcCCCCcccceeeeeEEEECCCC-----------Chhhcc--------
Confidence 99997776666555531 112345678874 32221 111100 000010
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHH---HHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHH
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAV---EDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHF 537 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~---~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi 537 (578)
......++.+.+... .++---.++|+.- .|+ .| +.++++++++.+ ++|++++|||++++++
T Consensus 137 -----------~a~~~~~~e~iaa~A~~a~~~~g~~~vY~e~--sG~-~g-~~~~v~~ir~~~~~~pv~vGfGI~~~e~a 201 (235)
T 3w01_A 137 -----------KANTDLTTEDLEAYAQMVNHMYRLPVMYIEY--SGI-YG-DVSKVQAVSEHLTETQLFYGGGISSEQQA 201 (235)
T ss_dssp -----------TBCCCCCHHHHHHHHHHHHHTTCCSEEEEEC--TTS-CC-CHHHHHHHHTTCSSSEEEEESCCCSHHHH
T ss_pred -----------cCCcCCCHHHHHHHHHHHHHHcCCCEEEEec--CCC-cC-CHHHHHHHHHhcCCCCEEEECCcCCHHHH
Confidence 011122445544442 2332234666644 465 34 899999999988 8999999999999999
Q ss_pred HHHHHhcCchHHhhhhhhccC
Q 045794 538 SDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+++.+ |||+|+|||+++.+
T Consensus 202 ~~~~~--gAD~VVVGSai~~~ 220 (235)
T 3w01_A 202 TEMAA--IADTIIVGDIIYKD 220 (235)
T ss_dssp HHHHT--TSSEEEECTHHHHC
T ss_pred HHHHc--CCCEEEECCceecC
Confidence 99873 99999999999985
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.3e-06 Score=91.07 Aligned_cols=90 Identities=12% Similarity=0.021 Sum_probs=68.9
Q ss_pred HHHHHHHHHHcC-CcEEEEecc-------C--CC----------CCCCCC-----CHHHHHHHHhhC-CCcEEEecCCCC
Q 045794 480 AYELAKAVEDLG-AGEILLNCI-------D--CD----------GQGKGF-----DMDLIKLISDAV-SIPVIASSGAGA 533 (578)
Q Consensus 480 ~~e~~~~~~~~G-~~~ii~tdi-------~--~d----------G~~~G~-----d~~li~~l~~~~-~ipVIasGGi~s 533 (578)
+.++++.+++.| ++.|++++. + .. |-++|+ +++.++++++.. ++|||++|||.+
T Consensus 209 ~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~~~ipII~~GGI~s 288 (354)
T 4ef8_A 209 FDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKLIFGCGGVYT 288 (354)
T ss_dssp HHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSEEEEESCCCS
T ss_pred HHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhCCCCCEEEECCcCC
Confidence 456677777898 999987532 1 11 223442 688999998886 799999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhcc-CCCCHHHHHHHHH
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHR-KEVPIQSVKEHLY 570 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~-~~~~~~~~~~~l~ 570 (578)
.+|+.+.+. .||++|++|+++.. |++.+.++++.|.
T Consensus 289 ~~da~~~l~-aGAd~V~vgra~l~~GP~~~~~i~~~l~ 325 (354)
T 4ef8_A 289 GEDAFLHVL-AGASMVQVGTALQEEGPSIFERLTSELL 325 (354)
T ss_dssp HHHHHHHHH-HTEEEEEECHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCEEEEhHHHHHhCHHHHHHHHHHHH
Confidence 999999996 89999999998865 4877766665543
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-06 Score=89.39 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=71.0
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
..++++.+++.|++.|-++.....+. ...+++.++++++.+++|||++||+ +.+++.++++..+||+|++|+++..++
T Consensus 253 ~~~~a~~l~~~G~d~i~v~~~~~~~~-~~~~~~~~~~v~~~~~iPvi~~Ggi-t~~~a~~~l~~g~aD~V~~gR~~l~~P 330 (364)
T 1vyr_A 253 ALYLIEELAKRGIAYLHMSETDLAGG-KPYSEAFRQKVRERFHGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRDYIANP 330 (364)
T ss_dssp HHHHHHHHHHTTCSEEEEECCBTTBC-CCCCHHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred HHHHHHHHHHhCCCEEEEecCcccCC-CcccHHHHHHHHHHCCCCEEEECCc-CHHHHHHHHHCCCccEEEECHHHHhCh
Confidence 56789999999999999887543322 2347889999999999999999999 899999999755599999999999988
Q ss_pred CCHHHHH
Q 045794 560 VPIQSVK 566 (578)
Q Consensus 560 ~~~~~~~ 566 (578)
..+..++
T Consensus 331 ~~~~~~~ 337 (364)
T 1vyr_A 331 DLVARLQ 337 (364)
T ss_dssp THHHHHH
T ss_pred hHHHHHH
Confidence 7666655
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=3.7e-06 Score=99.63 Aligned_cols=95 Identities=21% Similarity=0.273 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHcCCcEEEEec----------------------cCCCCCCCCC-C----HHHHHHHHhhC-CCcEEEecC
Q 045794 479 GAYELAKAVEDLGAGEILLNC----------------------IDCDGQGKGF-D----MDLIKLISDAV-SIPVIASSG 530 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~td----------------------i~~dG~~~G~-d----~~li~~l~~~~-~ipVIasGG 530 (578)
++.++++.+++.|++.|++++ .+..|.+.|+ + ++.++++++.+ ++|||++||
T Consensus 716 ~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~~~ipvi~~GG 795 (1025)
T 1gte_A 716 DIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGG 795 (1025)
T ss_dssp CHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESS
T ss_pred HHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHcCCCCEEEecC
Confidence 588999999999999999942 1233344555 3 37899999888 899999999
Q ss_pred CCCHHHHHHHHHhcCchHHhhhhhhcc-CCCCHH----HHHHHHHhCCC
Q 045794 531 AGAVEHFSDVFRKTNASAALAAGIFHR-KEVPIQ----SVKEHLYKEGI 574 (578)
Q Consensus 531 i~s~eDi~~l~~~~G~~gv~vgsa~~~-~~~~~~----~~~~~l~~~~i 574 (578)
|.+.+|+.+++. +||++|++|+++.. +...+. +++.+|...|+
T Consensus 796 I~s~~da~~~l~-~Ga~~v~vg~~~l~~~~~~~~~~~~~l~~~l~~~G~ 843 (1025)
T 1gte_A 796 IDSAESGLQFLH-SGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSI 843 (1025)
T ss_dssp CCSHHHHHHHHH-TTCSEEEESHHHHTSCTTHHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHH-cCCCEEEEeeccccCCccHHHHHHHHHHHHHHHcCC
Confidence 999999999996 99999999999986 443344 44555555565
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.2e-05 Score=76.11 Aligned_cols=160 Identities=13% Similarity=0.113 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCC-ccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGG-IRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGG-ir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++++.+.+.|++.+-+-.-+ ..-.+.|+++++++. .+.+|.| +-+. ++++..++
T Consensus 28 ~~~~~~~~al~~gGv~~iel~~k~---------~~~~~~i~~l~~~~~-~~~vgagtvi~~-----------d~~~~A~~ 86 (214)
T 1wbh_A 28 EHAVPMAKALVAGGVRVLNVTLRT---------ECAVDAIRAIAKEVP-EAIVGAGTVLNP-----------QQLAEVTE 86 (214)
T ss_dssp GGHHHHHHHHHHTTCCEEEEESCS---------TTHHHHHHHHHHHCT-TSEEEEESCCSH-----------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC---------hhHHHHHHHHHHHCc-CCEEeeCEEEEH-----------HHHHHHHH
Confidence 467899999999999977766321 123678888888774 3445544 4333 56999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|||.|+.+. .+ ++ +.+.++++|...+. .+
T Consensus 87 aGAd~v~~p~---~d------------~~-v~~~~~~~g~~~i~-G~--------------------------------- 116 (214)
T 1wbh_A 87 AGAQFAISPG---LT------------EP-LLKAATEGTIPLIP-GI--------------------------------- 116 (214)
T ss_dssp HTCSCEEESS---CC------------HH-HHHHHHHSSSCEEE-EE---------------------------------
T ss_pred cCCCEEEcCC---CC------------HH-HHHHHHHhCCCEEE-ec---------------------------------
Confidence 9999999874 21 12 34566778854332 21
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
.+ .+-+.++.+.|++.+-++.-. ...| .+.++.+++.+ ++|+++.||| +++.+.++++ .
T Consensus 117 ------------~t-~~e~~~A~~~Gad~v~~Fpa~---~~gG--~~~lk~i~~~~~~ipvvaiGGI-~~~n~~~~l~-a 176 (214)
T 1wbh_A 117 ------------ST-VSELMLGMDYGLKEFKFFPAE---ANGG--VKALQAIAGPFSQVRFCPTGGI-SPANYRDYLA-L 176 (214)
T ss_dssp ------------SS-HHHHHHHHHTTCCEEEETTTT---TTTH--HHHHHHHHTTCTTCEEEEBSSC-CTTTHHHHHT-S
T ss_pred ------------CC-HHHHHHHHHCCCCEEEEecCc---cccC--HHHHHHHhhhCCCCeEEEECCC-CHHHHHHHHh-c
Confidence 02 334567789999999886611 1112 67899999888 8999999999 5699999996 6
Q ss_pred -CchHHhhhhhhccC
Q 045794 545 -NASAALAAGIFHRK 558 (578)
Q Consensus 545 -G~~gv~vgsa~~~~ 558 (578)
|++++. ||++...
T Consensus 177 gg~~~v~-gS~i~~~ 190 (214)
T 1wbh_A 177 KSVLCIG-GSWLVPA 190 (214)
T ss_dssp TTBSCEE-EGGGSCH
T ss_pred CCCeEEE-eccccCh
Confidence 999998 8888653
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-05 Score=78.05 Aligned_cols=160 Identities=12% Similarity=0.169 Sum_probs=113.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++|+.+.+.|++.|=+ .++. ..-++.|+++++++.- +.+| |.+-+. ++++.+++
T Consensus 46 ~~a~~~a~al~~gGi~~iEv-t~~t--------~~a~e~I~~l~~~~~~-~~iGaGTVlt~-----------~~a~~Ai~ 104 (232)
T 4e38_A 46 EDIIPLGKVLAENGLPAAEI-TFRS--------DAAVEAIRLLRQAQPE-MLIGAGTILNG-----------EQALAAKE 104 (232)
T ss_dssp GGHHHHHHHHHHTTCCEEEE-ETTS--------TTHHHHHHHHHHHCTT-CEEEEECCCSH-----------HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEE-eCCC--------CCHHHHHHHHHHhCCC-CEEeECCcCCH-----------HHHHHHHH
Confidence 47889999999999996654 4432 2237889999887743 3455 445554 56999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.|+... . ++++++. ++++| -.++. +
T Consensus 105 AGA~fIvsP~--~-------------~~~vi~~-~~~~g-i~~ip--G-------------------------------- 133 (232)
T 4e38_A 105 AGATFVVSPG--F-------------NPNTVRA-CQEIG-IDIVP--G-------------------------------- 133 (232)
T ss_dssp HTCSEEECSS--C-------------CHHHHHH-HHHHT-CEEEC--E--------------------------------
T ss_pred cCCCEEEeCC--C-------------CHHHHHH-HHHcC-CCEEc--C--------------------------------
Confidence 9999998753 1 2355555 45565 12222 1
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
+...+.+.++.++|++.+-++....- . ..+.++.++..+ ++|+++.||| +++.+.+.++ .
T Consensus 134 ------------v~TptEi~~A~~~Gad~vK~FPa~~~---g--G~~~lkal~~p~p~ip~~ptGGI-~~~n~~~~l~-a 194 (232)
T 4e38_A 134 ------------VNNPSTVEAALEMGLTTLKFFPAEAS---G--GISMVKSLVGPYGDIRLMPTGGI-TPSNIDNYLA-I 194 (232)
T ss_dssp ------------ECSHHHHHHHHHTTCCEEEECSTTTT---T--HHHHHHHHHTTCTTCEEEEBSSC-CTTTHHHHHT-S
T ss_pred ------------CCCHHHHHHHHHcCCCEEEECcCccc---c--CHHHHHHHHHHhcCCCeeeEcCC-CHHHHHHHHH-C
Confidence 11234556677999999988774321 1 358999998876 6999999999 5899999995 8
Q ss_pred CchHHhhhhhhcc
Q 045794 545 NASAALAAGIFHR 557 (578)
Q Consensus 545 G~~gv~vgsa~~~ 557 (578)
|+.++++||.+..
T Consensus 195 Ga~~~vgGs~l~~ 207 (232)
T 4e38_A 195 PQVLACGGTWMVD 207 (232)
T ss_dssp TTBCCEEECGGGC
T ss_pred CCeEEEECchhcC
Confidence 9999988998753
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.8e-07 Score=95.73 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC-----------CCCCCCC-C----HHHHHHHHhhC--CCcEEEecCCCCHHHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC-----------DGQGKGF-D----MDLIKLISDAV--SIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~-----------dG~~~G~-d----~~li~~l~~~~--~ipVIasGGi~s~eDi~~l 540 (578)
++.++++.+++.|++.|++++.+. .|.++|+ . ++.++++++.+ ++|||+.|||.+.+|+.++
T Consensus 284 ~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~ 363 (415)
T 3i65_A 284 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEK 363 (415)
T ss_dssp HHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHH
Confidence 478999999999999999998654 2444554 2 47899999988 7999999999999999999
Q ss_pred HHhcCchHHhhhhhhc-cCCCCHHHHHH----HHHhCCC
Q 045794 541 FRKTNASAALAAGIFH-RKEVPIQSVKE----HLYKEGI 574 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~-~~~~~~~~~~~----~l~~~~i 574 (578)
+. +||++|++|+++. .|+..+.++++ +|...|+
T Consensus 364 l~-aGAd~VqIgra~l~~GP~~~~~i~~~L~~~l~~~G~ 401 (415)
T 3i65_A 364 IE-AGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGY 401 (415)
T ss_dssp HH-HTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHTTC
T ss_pred HH-cCCCEEEEcHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 96 9999999999984 55776666555 4555554
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-05 Score=78.12 Aligned_cols=181 Identities=13% Similarity=0.112 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhh--ccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSEN--VFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~--~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
.+-.+.++.+.+.|++++|+ |+ |+..- .+-.--.++++++++. ..+|+.+.=-+.+.++ -++.+
T Consensus 17 ~~l~~~i~~l~~~g~d~~h~-DVmDg~Fv--pn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~----------~i~~~ 83 (228)
T 3ovp_A 17 ANLGAECLRMLDSGADYLHL-DVMDGHFV--PNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQ----------WVKPM 83 (228)
T ss_dssp GGHHHHHHHHHHTTCSCEEE-EEEBSSSS--SCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGG----------GHHHH
T ss_pred hhHHHHHHHHHHcCCCEEEE-EecCCCcC--cccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHH----------HHHHH
Confidence 35557778888899999995 43 34210 0111225788888877 3677776556776654 38889
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.++|||.|.+..++..+. .+.++++ +++|. ++.+++....
T Consensus 84 ~~aGad~itvH~Ea~~~~-----------~~~i~~i-~~~G~-k~gval~p~t--------------------------- 123 (228)
T 3ovp_A 84 AVAGANQYTFHLEATENP-----------GALIKDI-RENGM-KVGLAIKPGT--------------------------- 123 (228)
T ss_dssp HHHTCSEEEEEGGGCSCH-----------HHHHHHH-HHTTC-EEEEEECTTS---------------------------
T ss_pred HHcCCCEEEEccCCchhH-----------HHHHHHH-HHcCC-CEEEEEcCCC---------------------------
Confidence 999999999987665532 1445555 56774 4555553211
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC---CHHHHHHHHhhC-CCcEEEecCCCCHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF---DMDLIKLISDAV-SIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~---d~~li~~l~~~~-~ipVIasGGi~s~eDi~~ 539 (578)
+ .+.++.+.+ .++.|+++.+......+-+ .++.++++++.. ++|+.+.||| +++.+.+
T Consensus 124 -------------~---~e~l~~~l~-~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI-~~~t~~~ 185 (228)
T 3ovp_A 124 -------------S---VEYLAPWAN-QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGV-GPDTVHK 185 (228)
T ss_dssp -------------C---GGGTGGGGG-GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEEEESSC-STTTHHH
T ss_pred -------------C---HHHHHHHhc-cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCEEEeCCc-CHHHHHH
Confidence 1 122223333 2788888777542222222 456788887765 6899999999 5799999
Q ss_pred HHHhcCchHHhhhhhhccCC
Q 045794 540 VFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~~~ 559 (578)
+.+ .||+.+++||++...+
T Consensus 186 ~~~-aGAd~~VvGsaIf~a~ 204 (228)
T 3ovp_A 186 CAE-AGANMIVSGSAIMRSE 204 (228)
T ss_dssp HHH-HTCCEEEESHHHHTCS
T ss_pred HHH-cCCCEEEEeHHHhCCC
Confidence 985 9999999999998665
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.4e-05 Score=78.29 Aligned_cols=180 Identities=15% Similarity=0.066 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+-.+.++.. +.|++++|+==.|+..- .+-.--..+++++++.++.|+.+-==+.+.+. -++.+.++|
T Consensus 14 ~l~~~i~~~-~~gad~lHvDvmDG~fv--pn~t~G~~~v~~lr~~~~~~~dvhLmv~dp~~----------~i~~~~~aG 80 (231)
T 3ctl_A 14 KFKEQIEFI-DSHADYFHIDIMDGHFV--PNLTLSPFFVSQVKKLATKPLDCHLMVTRPQD----------YIAQLARAG 80 (231)
T ss_dssp GHHHHHHHH-HTTCSCEEEEEECSSSS--SCCCBCHHHHHHHHTTCCSCEEEEEESSCGGG----------THHHHHHHT
T ss_pred hHHHHHHHH-HcCCCEEEEEEEeCccC--ccchhcHHHHHHHHhccCCcEEEEEEecCHHH----------HHHHHHHcC
Confidence 445566677 88999999532354210 11122367899998877777776655666543 378899999
Q ss_pred cceeecchhh-hccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 388 ADKISIGSDA-VYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 388 a~~vv~gt~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
||.|.+--++ -... ...++.+ +++|. ++.+++...
T Consensus 81 Ad~itvh~Ea~~~~~-----------~~~i~~i-~~~G~-k~gv~lnp~------------------------------- 116 (231)
T 3ctl_A 81 ADFITLHPETINGQA-----------FRLIDEI-RRHDM-KVGLILNPE------------------------------- 116 (231)
T ss_dssp CSEEEECGGGCTTTH-----------HHHHHHH-HHTTC-EEEEEECTT-------------------------------
T ss_pred CCEEEECcccCCccH-----------HHHHHHH-HHcCC-eEEEEEECC-------------------------------
Confidence 9999987666 3321 1344444 56774 455655321
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC--CCCCCC-CHHHHHHHHhhC-----CCcEEEecCCCCHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD--GQGKGF-DMDLIKLISDAV-----SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d--G~~~G~-d~~li~~l~~~~-----~ipVIasGGi~s~eDi~ 538 (578)
++.+.++.+.+ +++.|+++.+... |..-.+ .++.++++++.. +++|.+-|||. .+.+.
T Consensus 117 ------------tp~~~~~~~l~-~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~ 182 (231)
T 3ctl_A 117 ------------TPVEAMKYYIH-KADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYE 182 (231)
T ss_dssp ------------CCGGGGTTTGG-GCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHH
T ss_pred ------------CcHHHHHHHHh-cCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHH
Confidence 11223333333 5899998877552 222222 356677776654 68999999995 68899
Q ss_pred HHHHhcCchHHhhh-hhhccCC
Q 045794 539 DVFRKTNASAALAA-GIFHRKE 559 (578)
Q Consensus 539 ~l~~~~G~~gv~vg-sa~~~~~ 559 (578)
++.+ .|++.+++| |++...+
T Consensus 183 ~~~~-aGAd~~V~G~saif~~~ 203 (231)
T 3ctl_A 183 KLMA-AGADVFIVGTSGLFNHA 203 (231)
T ss_dssp HHHH-HTCCEEEECTTTTGGGC
T ss_pred HHHH-cCCCEEEEccHHHhCCC
Confidence 9985 899999999 9998653
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.5e-06 Score=90.43 Aligned_cols=75 Identities=27% Similarity=0.286 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
++.+.++.+.+.|++.+ .+|.............+...|+++++.+++||++ ||+.+.+| ++.+.++|
T Consensus 166 ~~~e~a~~~~~agad~i-~i~~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~-ggi~t~e~-----------a~~~~~~G 232 (393)
T 2qr6_A 166 NVREIAPIVIKAGADLL-VIQGTLISAEHVNTGGEALNLKEFIGSLDVPVIA-GGVNDYTT-----------ALHMMRTG 232 (393)
T ss_dssp THHHHHHHHHHTTCSEE-EEECSSCCSSCCCC-----CHHHHHHHCSSCEEE-ECCCSHHH-----------HHHHHTTT
T ss_pred cHHHHHHHHHHCCCCEE-EEeCCccccccCCCcccHHHHHHHHHhcCCCEEE-CCcCCHHH-----------HHHHHHcC
Confidence 56788999988999965 4665431111111111455578888888999988 67788765 99999999
Q ss_pred cceeecch
Q 045794 388 ADKISIGS 395 (578)
Q Consensus 388 a~~vv~gt 395 (578)
||.|++|+
T Consensus 233 ad~i~vg~ 240 (393)
T 2qr6_A 233 AVGIIVGG 240 (393)
T ss_dssp CSEEEESC
T ss_pred CCEEEECC
Confidence 99999964
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=98.25 E-value=3.2e-06 Score=81.12 Aligned_cols=160 Identities=14% Similarity=0.149 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCC-ccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGG-IRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGG-ir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+..++++.+.+.|++.|.+ .+.. ..-.+.|+++++.++-.+.+|.| +.+. +.++.+.+
T Consensus 22 ~~~~~~~~~~~~~G~~~iev-~~~~--------~~~~~~i~~ir~~~~~~~~ig~~~v~~~-----------~~~~~a~~ 81 (205)
T 1wa3_A 22 EEAKEKALAVFEGGVHLIEI-TFTV--------PDADTVIKELSFLKEKGAIIGAGTVTSV-----------EQCRKAVE 81 (205)
T ss_dssp HHHHHHHHHHHHTTCCEEEE-ETTS--------TTHHHHHHHTHHHHHTTCEEEEESCCSH-----------HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEE-eCCC--------hhHHHHHHHHHHHCCCCcEEEecccCCH-----------HHHHHHHH
Confidence 36788999999999998764 3322 11245677777765312345433 3444 45899999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|||.| ++.. +. +++++ .++++|- .++. ++
T Consensus 82 ~Gad~i-v~~~-~~-------------~~~~~-~~~~~g~-~vi~--g~------------------------------- 111 (205)
T 1wa3_A 82 SGAEFI-VSPH-LD-------------EEISQ-FCKEKGV-FYMP--GV------------------------------- 111 (205)
T ss_dssp HTCSEE-ECSS-CC-------------HHHHH-HHHHHTC-EEEC--EE-------------------------------
T ss_pred cCCCEE-EcCC-CC-------------HHHHH-HHHHcCC-cEEC--Cc-------------------------------
Confidence 999999 5432 11 13444 4455652 2222 10
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
.+.. .+.++.+.|++.+-++.... ..++.++++++.+ ++||++.|||. .+++.++++ .
T Consensus 112 ------------~t~~-e~~~a~~~Gad~vk~~~~~~------~g~~~~~~l~~~~~~~pvia~GGI~-~~~~~~~~~-~ 170 (205)
T 1wa3_A 112 ------------MTPT-ELVKAMKLGHTILKLFPGEV------VGPQFVKAMKGPFPNVKFVPTGGVN-LDNVCEWFK-A 170 (205)
T ss_dssp ------------CSHH-HHHHHHHTTCCEEEETTHHH------HHHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHH-H
T ss_pred ------------CCHH-HHHHHHHcCCCEEEEcCccc------cCHHHHHHHHHhCCCCcEEEcCCCC-HHHHHHHHH-C
Confidence 1222 35667899999877654211 1367888998877 89999999996 799999985 8
Q ss_pred CchHHhhhhhhcc
Q 045794 545 NASAALAAGIFHR 557 (578)
Q Consensus 545 G~~gv~vgsa~~~ 557 (578)
|++++.+||+++.
T Consensus 171 Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 171 GVLAVGVGSALVK 183 (205)
T ss_dssp TCSCEEECHHHHC
T ss_pred CCCEEEECccccC
Confidence 9999999999987
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-06 Score=86.60 Aligned_cols=118 Identities=15% Similarity=0.045 Sum_probs=86.8
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
+|+.+||+++++ .|+.. .|. +..|++ .+ ++.+.++.+++.|++.|-+.+.+..-..
T Consensus 4 ~iip~id~~~g~----------~V~~~----~g~-~~~~~~--------~~-d~~~~a~~~~~~Gad~i~v~~~d~~~~~ 59 (244)
T 2y88_A 4 ILLPAVNVVEGR----------AVRLV----QGK-AGSQTE--------YG-SAVDAALGWQRDGAEWIHLVDLDAAFGR 59 (244)
T ss_dssp EEEEEEEEETTE----------EEEEE----TTE-EEEEEE--------EE-EHHHHHHHHHHTTCSEEEEEEHHHHTTS
T ss_pred EEEEEEEeECCE----------EEEee----ccc-ccccee--------cC-CHHHHHHHHHHcCCCEEEEEcCcccccC
Confidence 699999999874 34432 111 111221 13 7899999999999999998875432211
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
...+ +.++++++.+++|+++.|||.+++++..+++ .||++|++|+.+...+..+.++.+.+.
T Consensus 60 ~~~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~-~Gad~V~lg~~~l~~p~~~~~~~~~~g 121 (244)
T 2y88_A 60 GSNH-ELLAEVVGKLDVQVELSGGIRDDESLAAALA-TGCARVNVGTAALENPQWCARVIGEHG 121 (244)
T ss_dssp CCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHHHHCHHHHHHHHHHHG
T ss_pred CChH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHH-cCCCEEEECchHhhChHHHHHHHHHcC
Confidence 2234 8999999999999999999999999999996 899999999988766544555555554
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=98.22 E-value=6.4e-06 Score=81.39 Aligned_cols=191 Identities=16% Similarity=0.176 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+-.+.++.+.+.|++++|+ |+ |+-.- .+-.--.++++++++.+ ..|+.+-==+.+.++ -++.+.
T Consensus 40 ~~L~~~i~~l~~~G~d~lHv-DVmDg~FV--pnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~----------~i~~~~ 106 (246)
T 3inp_A 40 ARLGDDVKAVLAAGADNIHF-DVMDNHYV--PNLTFGPMVLKALRDYGITAGMDVHLMVKPVDA----------LIESFA 106 (246)
T ss_dssp GGHHHHHHHHHHTTCCCEEE-EEEBSSSS--SCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHH----------HHHHHH
T ss_pred hhHHHHHHHHHHcCCCEEEE-EecCCCcC--cchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHH----------HHHHHH
Confidence 45567888888999999995 44 44210 01111257888888877 778766555666543 488888
Q ss_pred HcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
++|||.|.+..++..+. .+.++++ +++|. ++.+++....
T Consensus 107 ~aGAd~itvH~Ea~~~~-----------~~~i~~i-r~~G~-k~Gvalnp~T---------------------------- 145 (246)
T 3inp_A 107 KAGATSIVFHPEASEHI-----------DRSLQLI-KSFGI-QAGLALNPAT---------------------------- 145 (246)
T ss_dssp HHTCSEEEECGGGCSCH-----------HHHHHHH-HTTTS-EEEEEECTTC----------------------------
T ss_pred HcCCCEEEEccccchhH-----------HHHHHHH-HHcCC-eEEEEecCCC----------------------------
Confidence 99999999987776532 1445565 66774 5666654211
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC--CCCCCC-CHHHHHHHHhh-----CCCcEEEecCCCCHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD--GQGKGF-DMDLIKLISDA-----VSIPVIASSGAGAVEH 536 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d--G~~~G~-d~~li~~l~~~-----~~ipVIasGGi~s~eD 536 (578)
+ .+.++.+.+ .++.|+++.+... |..-.+ .++.++++++. .++++.+-|||+ .+.
T Consensus 146 ------------p---~e~l~~~l~-~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~t 208 (246)
T 3inp_A 146 ------------G---IDCLKYVES-NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYN 208 (246)
T ss_dssp ------------C---SGGGTTTGG-GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTT
T ss_pred ------------C---HHHHHHHHh-cCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHH
Confidence 1 122223333 4889998876542 222223 35667777654 358999999996 689
Q ss_pred HHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 537 FSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 537 i~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+.++.+ .||+.+++||++...+ ++.+..+.|+
T Consensus 209 i~~~~~-aGAD~~V~GSaIf~a~-dp~~~i~~l~ 240 (246)
T 3inp_A 209 IAEIAV-CGVNAFVAGSAIFNSD-SYKQTIDKMR 240 (246)
T ss_dssp HHHHHT-TTCCEEEESHHHHTSS-CHHHHHHHHH
T ss_pred HHHHHH-cCCCEEEEehHHhCCC-CHHHHHHHHH
Confidence 999985 9999999999998655 3444334443
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.9e-06 Score=87.40 Aligned_cols=171 Identities=18% Similarity=0.218 Sum_probs=108.7
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
.++|....+.|. +.++- .. . .++.+.+..+++.-++.+.-|.+.. +.+.++.+.++|+|
T Consensus 56 ~~lA~A~a~~Gg--~gvi~--~~-------~-s~ee~~~~i~~~~~~~~~~~g~~~~---------~~e~~~~a~~aGvd 114 (361)
T 3r2g_A 56 SNMANFMHSKGA--MGALH--RF-------M-TIEENIQEFKKCKGPVFVSVGCTEN---------ELQRAEALRDAGAD 114 (361)
T ss_dssp HHHHHHHHHTTC--EEBCC--SC-------S-CHHHHHHHHHTCCSCCBEEECSSHH---------HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCC--CEEEe--CC-------C-CHHHHHHHHhhcceEEEEEcCCCHH---------HHHHHHHHHHcCCC
Confidence 378888888874 33332 11 1 1233333333343333333344432 35789999999999
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTV 469 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (578)
.|.+.+..-. ...+ ++.++.+.+.|+.-.|++.
T Consensus 115 vI~id~a~G~-~~~~--------~e~I~~ir~~~~~~~Vi~G-------------------------------------- 147 (361)
T 3r2g_A 115 FFCVDVAHAH-AKYV--------GKTLKSLRQLLGSRCIMAG-------------------------------------- 147 (361)
T ss_dssp EEEEECSCCS-SHHH--------HHHHHHHHHHHTTCEEEEE--------------------------------------
T ss_pred EEEEeCCCCC-cHhH--------HHHHHHHHHhcCCCeEEEc--------------------------------------
Confidence 8888654322 1111 3678888888853333330
Q ss_pred cccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC--------CC-CCHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 045794 470 NGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG--------KG-FDMDLIKLISDAVSIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 470 ~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~--------~G-~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l 540 (578)
++...+.++.+.+.|++.|.+ .+.. |.. .| +.++.+.++++... |||+.|||.+.+|+.++
T Consensus 148 -------~V~T~e~A~~a~~aGaD~I~V-g~g~-G~~~~tr~~~g~g~p~l~aI~~~~~~~~-PVIAdGGI~~~~di~kA 217 (361)
T 3r2g_A 148 -------NVATYAGADYLASCGADIIKA-GIGG-GSVCSTRIKTGFGVPMLTCIQDCSRADR-SIVADGGIKTSGDIVKA 217 (361)
T ss_dssp -------EECSHHHHHHHHHTTCSEEEE-CCSS-SSCHHHHHHHCCCCCHHHHHHHHTTSSS-EEEEESCCCSHHHHHHH
T ss_pred -------CcCCHHHHHHHHHcCCCEEEE-cCCC-CcCccccccCCccHHHHHHHHHHHHhCC-CEEEECCCCCHHHHHHH
Confidence 011256789999999999997 3221 211 12 35666666665555 99999999999999999
Q ss_pred HHhcCchHHhhhhhhccCC
Q 045794 541 FRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~ 559 (578)
+. +||++|++|++|...+
T Consensus 218 La-~GAd~V~iGr~f~~t~ 235 (361)
T 3r2g_A 218 LA-FGADFVMIGGMLAGSA 235 (361)
T ss_dssp HH-TTCSEEEESGGGTTBT
T ss_pred HH-cCCCEEEEChHHhCCc
Confidence 96 9999999999986543
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=98.16 E-value=4.2e-06 Score=90.19 Aligned_cols=184 Identities=16% Similarity=0.164 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhh---c----cccEEEeCCccccccCCCCccChHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSEN---V----FVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~---~----~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
++.+..+.+.+.....+-++|=++..-+- .....|.+..+. + .-.+.+|..|..-+| .+|.+
T Consensus 218 ~leeA~~iL~~~kieklpVVd~~g~LvGl----IT~kDi~k~~~~p~A~k~d~~grL~VgAAVgv~~d-------~~eR~ 286 (556)
T 4af0_A 218 TLEKANSLLRETKKGKLPIVDSNGHLVSL----VARSDLLKNQNYPYASKVPESKQLYCGAAIGTRPG-------DKDRL 286 (556)
T ss_dssp --------------------------------------------CTTCCBCTTTCCBCCEEEECSSHH-------HHHHH
T ss_pred CHHHHHHHHHHccccceeEEccCCcEEEE----EEechhhhhhhCCcchhcchhhceeeEEEeccCcc-------HHHHH
Confidence 45566666777788888888866532211 111222221110 0 112334444443323 36889
Q ss_pred HHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCC
Q 045794 381 SEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGE 460 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (578)
+.|.++|+|.++|.++--.. ... .++++.+.+.|+.-.|++ =
T Consensus 287 ~aLv~AGvD~iviD~ahGhs-~~v--------~~~i~~ik~~~p~~~via-G---------------------------- 328 (556)
T 4af0_A 287 KLLAEAGLDVVVLDSSQGNS-VYQ--------IEFIKWIKQTYPKIDVIA-G---------------------------- 328 (556)
T ss_dssp HHHHHTTCCEEEECCSCCCS-HHH--------HHHHHHHHHHCTTSEEEE-E----------------------------
T ss_pred HHHHhcCCcEEEEecccccc-HHH--------HHHHHHHHhhCCcceEEe-c----------------------------
Confidence 99999999999998865442 222 378899999996433443 1
Q ss_pred CcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCCC-CHHHHHHH---HhhCCCcEEEecC
Q 045794 461 EYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKGF-DMDLIKLI---SDAVSIPVIASSG 530 (578)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G~-d~~li~~l---~~~~~ipVIasGG 530 (578)
++-..+.++.|.+.|++.|.+- ..+|.-+.-|. -+..+.++ ++...+||||=||
T Consensus 329 ----------------NVaT~e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGG 392 (556)
T 4af0_A 329 ----------------NVVTREQAAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGG 392 (556)
T ss_dssp ----------------EECSHHHHHHHHHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEEESC
T ss_pred ----------------cccCHHHHHHHHHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEEecCC
Confidence 2234688899999999998742 23444444443 44444444 4455899999999
Q ss_pred CCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 531 AGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 531 i~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
|+..-|+.+++. +||+.||+|+.|..
T Consensus 393 I~~sGDi~KAla-aGAd~VMlGsllAG 418 (556)
T 4af0_A 393 IGNIGHIAKALA-LGASAVMMGGLLAG 418 (556)
T ss_dssp CCSHHHHHHHHH-TTCSEEEESTTTTT
T ss_pred cCcchHHHHHhh-cCCCEEEEchhhcc
Confidence 999999999996 99999999998853
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=6.9e-06 Score=85.29 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=79.0
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEecccCCC-CCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFLNITGFRD-FPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~-~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
..+++++|+.+.+.|++.||+.+=..... .....+.+.+.++++++.+++||+..|||++.++ +++++
T Consensus 228 ~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~-----------a~~~L 296 (340)
T 3gr7_A 228 AKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQ-----------AEEIL 296 (340)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHH-----------HHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHH-----------HHHHH
Confidence 36899999999999999999976221100 0112345788999999999999999999999866 99999
Q ss_pred HcC-cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 385 RSG-ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 385 ~~G-a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
+.| ||.|.+|+.++.| |++++++.+.+|.+
T Consensus 297 ~~G~aD~V~iGR~~lan------------Pdl~~ki~~~l~~~ 327 (340)
T 3gr7_A 297 QNGRADLVFLGRELLRN------------PYWPYAAARELGAK 327 (340)
T ss_dssp HTTSCSEEEECHHHHHC------------TTHHHHHHHHTTCC
T ss_pred HCCCeeEEEecHHHHhC------------chHHHHHHHHCCCC
Confidence 999 9999999999985 47789999999743
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=2.4e-05 Score=76.43 Aligned_cols=161 Identities=13% Similarity=0.074 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+.+++++.+.+.|++.+-+-. .. ..-.+.|+++++++. .+.+|.|.- +. -+.++..+++
T Consensus 38 ~~~~~~~~al~~gGv~~iel~~-k~--------~~~~~~i~~l~~~~~-~~~igagtv-l~---------~d~~~~A~~a 97 (225)
T 1mxs_A 38 EDILPLADALAAGGIRTLEVTL-RS--------QHGLKAIQVLREQRP-ELCVGAGTV-LD---------RSMFAAVEAA 97 (225)
T ss_dssp GGHHHHHHHHHHTTCCEEEEES-SS--------THHHHHHHHHHHHCT-TSEEEEECC-CS---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEec-CC--------ccHHHHHHHHHHhCc-ccEEeeCeE-ee---------HHHHHHHHHC
Confidence 4778999999999999777652 21 233678888888763 455654442 21 2569999999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
||+.|+.+. .+ ++ +.+.++++|...+. .+
T Consensus 98 GAd~v~~p~---~d------------~~-v~~~~~~~g~~~i~-G~---------------------------------- 126 (225)
T 1mxs_A 98 GAQFVVTPG---IT------------ED-ILEAGVDSEIPLLP-GI---------------------------------- 126 (225)
T ss_dssp TCSSEECSS---CC------------HH-HHHHHHHCSSCEEC-EE----------------------------------
T ss_pred CCCEEEeCC---CC------------HH-HHHHHHHhCCCEEE-ee----------------------------------
Confidence 999999874 22 12 34566778754322 11
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcC
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTN 545 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G 545 (578)
.++ +-+.++.+.|++.+-++.-.. ..| .+.++.++..+ ++|+++.||| +++.+.++++..|
T Consensus 127 -----------~t~-~e~~~A~~~Gad~vk~FPa~~---~~G--~~~lk~i~~~~~~ipvvaiGGI-~~~N~~~~l~~~G 188 (225)
T 1mxs_A 127 -----------STP-SEIMMGYALGYRRFKLFPAEI---SGG--VAAIKAFGGPFGDIRFCPTGGV-NPANVRNYMALPN 188 (225)
T ss_dssp -----------CSH-HHHHHHHTTTCCEEEETTHHH---HTH--HHHHHHHHTTTTTCEEEEBSSC-CTTTHHHHHHSTT
T ss_pred -----------CCH-HHHHHHHHCCCCEEEEccCcc---ccC--HHHHHHHHhhCCCCeEEEECCC-CHHHHHHHHhccC
Confidence 123 345677899999998865111 112 67889998888 8999999999 6789999985369
Q ss_pred chHHhhhhhhcc
Q 045794 546 ASAALAAGIFHR 557 (578)
Q Consensus 546 ~~gv~vgsa~~~ 557 (578)
++++. +|++..
T Consensus 189 a~~v~-gSai~~ 199 (225)
T 1mxs_A 189 VMCVG-TTWMLD 199 (225)
T ss_dssp BCCEE-ECTTSC
T ss_pred CEEEE-EchhcC
Confidence 99999 998875
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-06 Score=93.66 Aligned_cols=90 Identities=17% Similarity=0.164 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCC-----------CCCCCC-----CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCD-----------GQGKGF-----DMDLIKLISDAV--SIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~d-----------G~~~G~-----d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l 540 (578)
++.++++.+++.|++.|++++.+.. |.++|+ .++.++++++.+ ++|||++|||.+.+|+.+.
T Consensus 312 d~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~ 391 (443)
T 1tv5_A 312 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEK 391 (443)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHH
Confidence 4678999999999999999986542 233343 357899999988 8999999999999999999
Q ss_pred HHhcCchHHhhhhhhc-cCCCCHHHHHHHH
Q 045794 541 FRKTNASAALAAGIFH-RKEVPIQSVKEHL 569 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~-~~~~~~~~~~~~l 569 (578)
+. .||++|++|+++. .++..+.++++.|
T Consensus 392 l~-aGAd~Vqigrall~~gP~l~~~i~~~l 420 (443)
T 1tv5_A 392 IE-AGASVCQLYSCLVFNGMKSAVQIKREL 420 (443)
T ss_dssp HH-TTEEEEEESHHHHHHGGGHHHHHHHHH
T ss_pred HH-cCCCEEEEcHHHHhcChHHHHHHHHHH
Confidence 96 8999999999965 4776666665543
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=7.9e-06 Score=86.69 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcC------CcEEEEeccCCCCCCC--------C-CCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 045794 480 AYELAKAVEDLG------AGEILLNCIDCDGQGK--------G-FDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 480 ~~e~~~~~~~~G------~~~ii~tdi~~dG~~~--------G-~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
..++++.+++.| ++.|-++....++... + .+++.++++++.+++|||++||+ +++++.++++..
T Consensus 262 ~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~~G~i-~~~~a~~~l~~g 340 (402)
T 2hsa_B 262 GLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGGY-TRELGIEAVAQG 340 (402)
T ss_dssp HHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSSCEEEESSC-CHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHCC
Confidence 578999999999 9999988755443111 2 25678899999999999999999 999999999855
Q ss_pred CchHHhhhhhhccCCCCHHHHH
Q 045794 545 NASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
+||+|++|+++..++.-+..++
T Consensus 341 ~aD~V~igR~~l~dP~l~~k~~ 362 (402)
T 2hsa_B 341 DADLVSYGRLFISNPDLVMRIK 362 (402)
T ss_dssp SCSEEEESHHHHHCTTHHHHHH
T ss_pred CCceeeecHHHHhCchHHHHHH
Confidence 6999999999999987776665
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.2e-06 Score=90.29 Aligned_cols=86 Identities=7% Similarity=-0.043 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCC-CCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKG-FDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G-~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
..++++.+++.|++.|-++....+....+ .+++.++++++.+++|||++||+ +.+++.++++..+||+|++|+++..+
T Consensus 258 ~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~~iPvi~~G~i-~~~~a~~~l~~g~aD~V~~gR~~l~~ 336 (376)
T 1icp_A 258 GLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFISN 336 (376)
T ss_dssp HHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHCCCCcEEeecHHHHhC
Confidence 57899999999999998886543321112 24567788999999999999999 89999999985569999999999998
Q ss_pred CCCHHHHH
Q 045794 559 EVPIQSVK 566 (578)
Q Consensus 559 ~~~~~~~~ 566 (578)
+.-+..++
T Consensus 337 P~l~~k~~ 344 (376)
T 1icp_A 337 PDLPKRFE 344 (376)
T ss_dssp TTHHHHHH
T ss_pred ccHHHHHH
Confidence 88776665
|
| >1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=98.12 E-value=7e-06 Score=78.13 Aligned_cols=86 Identities=19% Similarity=0.357 Sum_probs=62.4
Q ss_pred CcEEEEEECC-CC--CHHHHHHHHHHCCCeEEEeCCcc----------------------CCCCCCEEEECCCCCchHHH
Q 045794 47 DSVVTLLDYG-AG--NVRSVRNAIRHLGFGIKDVQTPE----------------------DILNANRLIFPGVGAFAAAM 101 (578)
Q Consensus 47 ~~~I~vld~~-~g--~~~~i~~~L~~~Gv~v~~v~~~~----------------------dl~~~DGlILpGGg~~~~~~ 101 (578)
.++|+|+-++ .. .+....+.|+..|+++.++.... ++.++|+||+|||.. .
T Consensus 23 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~--~-- 98 (193)
T 1oi4_A 23 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHS--P-- 98 (193)
T ss_dssp CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTH--H--
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcC--H--
Confidence 3568888654 12 23456889999999998774321 124689999999842 1
Q ss_pred HHH-HhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 102 DVL-NKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 102 ~~l-~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
..+ ....+.++|+++.+.++||.|||.|.|+|+.+
T Consensus 99 ~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 99 DYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp HHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred HHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 122 12357889999999999999999999999984
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=3.8e-06 Score=88.02 Aligned_cols=44 Identities=16% Similarity=0.003 Sum_probs=36.8
Q ss_pred HHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 513 LIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 513 li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+.++++.+ ++|||++|||++..|+.+++. .||++|++|+.+..
T Consensus 257 ~l~~v~~~~~~ipvia~GGI~~~~d~~kal~-lGA~~v~ig~~~l~ 301 (368)
T 3vkj_A 257 SIMEVRYSVPDSFLVGSGGIRSGLDAAKAIA-LGADIAGMALPVLK 301 (368)
T ss_dssp HHHHHHHHSTTCEEEEESSCCSHHHHHHHHH-HTCSEEEECHHHHH
T ss_pred HHHHHHHHcCCCcEEEECCCCCHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 344555555 489999999999999999996 89999999998763
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.4e-06 Score=90.30 Aligned_cols=89 Identities=16% Similarity=0.180 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHcCCcEEEEeccC--CC-----------CCCCCC-----CHHHHHHHHhhC--CCcEEEecCCCCHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCID--CD-----------GQGKGF-----DMDLIKLISDAV--SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~--~d-----------G~~~G~-----d~~li~~l~~~~--~ipVIasGGi~s~eDi~ 538 (578)
+..++++.+++.|++.|.+++.+ ++ |.+.|+ .++.++++++.+ ++|||++|||.+.+|+.
T Consensus 226 ~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~ 305 (336)
T 1f76_A 226 ELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAR 305 (336)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence 35788999999999999998643 11 112342 357888998888 89999999999999999
Q ss_pred HHHHhcCchHHhhhhhhcc-CCCCHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIFHR-KEVPIQSVKEH 568 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~-~~~~~~~~~~~ 568 (578)
+++. .||++|++|+++.. ++..+.++++.
T Consensus 306 ~~l~-~GAd~V~igr~~l~~~P~~~~~i~~~ 335 (336)
T 1f76_A 306 EKIA-AGASLVQIYSGFIFKGPPLIKEIVTH 335 (336)
T ss_dssp HHHH-HTCSEEEESHHHHHHCHHHHHHHHHH
T ss_pred HHHH-CCCCEEEeeHHHHhcCcHHHHHHHhh
Confidence 9996 89999999999875 78777776653
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=5.1e-05 Score=83.35 Aligned_cols=175 Identities=13% Similarity=0.048 Sum_probs=118.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+..+.++...+.|++.|++=+=+.... ......+.++++++..++|+.+- +. ++-.++.
T Consensus 25 ~~l~~~ve~al~~Gv~~vQlR~K~~~~~---~~~~~a~~l~~l~~~~~v~liIN----D~-------------~dlA~~~ 84 (540)
T 3nl6_A 25 KTLYGQVEAGLQNGVTLVQIREKDADTK---FFIEEALQIKELCHAHNVPLIIN----DR-------------IDVAMAI 84 (540)
T ss_dssp CCHHHHHHHHHHTTCSEEEECCSSSCTT---HHHHHHHHHHHHHHHTTCCEEEC----SC-------------SHHHHHT
T ss_pred chHHHHHHHHHHCCCCEEEEecCCCCHH---HHHHHHHHHHHHHHhcCCEEEEe----Cc-------------HHHHHHc
Confidence 4678899999999999999865544211 11222344556667778999873 32 5567789
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|||.|=+|..-.. +.++.+.+|++++ +++.+.
T Consensus 85 gAdGVHLgq~dl~----------------~~~ar~~lg~~~i-iG~S~h------------------------------- 116 (540)
T 3nl6_A 85 GADGIHVGQDDMP----------------IPMIRKLVGPDMV-IGWSVG------------------------------- 116 (540)
T ss_dssp TCSEEEECTTSSC----------------HHHHHHHHCTTSE-EEEEEC-------------------------------
T ss_pred CCCEEEEChhhcC----------------HHHHHHHhCCCCE-EEEECC-------------------------------
Confidence 9999999864432 2455555665543 333321
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcC---CcEEEEeccCCCCCCCCC-----CHHHHHHHHhh------CCCcEEEecCCC
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLG---AGEILLNCIDCDGQGKGF-----DMDLIKLISDA------VSIPVIASSGAG 532 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G---~~~ii~tdi~~dG~~~G~-----d~~li~~l~~~------~~ipVIasGGi~ 532 (578)
+ .+.++++.+.| ++.|.+-.+-...+..+. .++.++++.+. .++|+++-|||
T Consensus 117 ------------t-~eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI- 182 (540)
T 3nl6_A 117 ------------F-PEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL- 182 (540)
T ss_dssp ------------S-HHHHHHHHHTCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-
T ss_pred ------------C-HHHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-
Confidence 2 34567788899 999998766544444433 47888887665 48999999999
Q ss_pred CHHHHHHHHHh-------cCchHHhhhhhhccCCCCHH
Q 045794 533 AVEHFSDVFRK-------TNASAALAAGIFHRKEVPIQ 563 (578)
Q Consensus 533 s~eDi~~l~~~-------~G~~gv~vgsa~~~~~~~~~ 563 (578)
+.+++.++++. .|++||.++|++...+-+..
T Consensus 183 ~~~ni~~v~~~~~~~g~~~GadgvAVvsaI~~a~dp~~ 220 (540)
T 3nl6_A 183 HPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAK 220 (540)
T ss_dssp CTTTHHHHHHHCBCTTSSCBCSCEEESHHHHTCTTHHH
T ss_pred CHHHHHHHHHhhcccccccCceEEEEeHHHhcCCCHHH
Confidence 78999999852 68999999999986654433
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=83.71 Aligned_cols=87 Identities=11% Similarity=0.013 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHcCCcEEEEe-ccCCCC---CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhh
Q 045794 479 GAYELAKAVEDLGAGEILLN-CIDCDG---QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~t-di~~dG---~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa 554 (578)
+..++++.+++. ++.|-+. ....+. ...|.++++++++++.+++|||++||+.+++++.++++..+||.|++|++
T Consensus 231 ~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~ 309 (343)
T 3kru_A 231 MMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLITTQELAEEILSNERADLVALGRE 309 (343)
T ss_dssp HHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEEESSCCCHHHHHHHHHTTSCSEEEESHH
T ss_pred HHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhcCcccceeeeeeHHHHHHHHHhchhhHHHHHHHH
Confidence 457899999999 9988874 322221 23567899999999999999999999999999999997445999999999
Q ss_pred hccCCCCHHHHH
Q 045794 555 FHRKEVPIQSVK 566 (578)
Q Consensus 555 ~~~~~~~~~~~~ 566 (578)
+..++.-+..++
T Consensus 310 ~lanPdl~~k~~ 321 (343)
T 3kru_A 310 LLRNPYWVLHTY 321 (343)
T ss_dssp HHHCTTHHHHTC
T ss_pred HhcCCeEEEEEe
Confidence 998887665554
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.8e-05 Score=76.31 Aligned_cols=160 Identities=13% Similarity=0.068 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+..+.++...+.|++.|.+..=+. ....-.++++++++..++++.+- ++ ++...+.|
T Consensus 14 ~~~~~~~~a~~~Gv~~v~lr~k~~------~~~~~~~~i~~l~~~~~~~livn------d~-----------~~~A~~~g 70 (210)
T 3ceu_A 14 EEDKIITALFEEGLDILHLRKPET------PAMYSERLLTLIPEKYHRRIVTH------EH-----------FYLKEEFN 70 (210)
T ss_dssp THHHHHHHHHHTTCCEEEECCSSC------CHHHHHHHHHHSCGGGGGGEEES------SC-----------TTHHHHTT
T ss_pred CHHHHHHHHHHCCCCEEEEccCCC------CHHHHHHHHHHHHHHhCCeEEEe------CC-----------HHHHHHcC
Confidence 345888888899999999874221 11233567888887778888762 23 56788899
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
++.|-+|....... ...+ .++++.+.
T Consensus 71 adgvhl~~~~~~~~-------------------~~~~---~~ig~s~~-------------------------------- 96 (210)
T 3ceu_A 71 LMGIHLNARNPSEP-------------------HDYA---GHVSCSCH-------------------------------- 96 (210)
T ss_dssp CSEEECCSSSCSCC-------------------TTCC---SEEEEEEC--------------------------------
T ss_pred CCEEEECccccccc-------------------cccC---CEEEEecC--------------------------------
Confidence 99998875433210 0011 22323211
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEecc----CCCCCCCCCCHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHH
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCI----DCDGQGKGFDMDLIKLISDA--VSIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi----~~dG~~~G~d~~li~~l~~~--~~ipVIasGGi~s~eDi~~l~ 541 (578)
++.+ +.+++ .|++.+.+-.+ ++.|.....+++.++.+++. .++||++.|||. ++.+.+++
T Consensus 97 -----------t~~e-~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~ 162 (210)
T 3ceu_A 97 -----------SVEE-VKNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIK 162 (210)
T ss_dssp -----------SHHH-HHTTG-GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHH
T ss_pred -----------CHHH-HHHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHH
Confidence 2333 45555 89999986443 23333335689999999887 689999999996 89999999
Q ss_pred HhcCchHHhhhhhhccCC
Q 045794 542 RKTNASAALAAGIFHRKE 559 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~ 559 (578)
+ .|++||.++|++....
T Consensus 163 ~-~Ga~gVav~s~i~~~~ 179 (210)
T 3ceu_A 163 D-FGFGGAVVLGDLWNKF 179 (210)
T ss_dssp H-TTCSEEEESHHHHTTC
T ss_pred H-hCCCEEEEhHHhHcCC
Confidence 6 9999999999997543
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.7e-05 Score=82.83 Aligned_cols=80 Identities=11% Similarity=0.022 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
..++++.+++.|++.|-++.-. .|. ++++++++.+++|||++||+ +++++.++++..+||.|++|+++..++
T Consensus 252 ~~~la~~l~~~Gvd~i~v~~~~-----~~~--~~~~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~iGR~~ladP 323 (361)
T 3gka_A 252 FGHVARELGRRRIAFLFARESF-----GGD--AIGQQLKAAFGGPFIVNENF-TLDSAQAALDAGQADAVAWGKLFIANP 323 (361)
T ss_dssp HHHHHHHHHHTTCSEEEEECCC-----STT--CCHHHHHHHHCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred HHHHHHHHHHcCCCEEEECCCC-----CCH--HHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHhCc
Confidence 5789999999999999887643 233 46778888889999999999 999999999755599999999999988
Q ss_pred CCHHHHHH
Q 045794 560 VPIQSVKE 567 (578)
Q Consensus 560 ~~~~~~~~ 567 (578)
.-+..+++
T Consensus 324 dl~~k~~~ 331 (361)
T 3gka_A 324 DLPRRFKL 331 (361)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHh
Confidence 76666553
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=9.9e-06 Score=85.27 Aligned_cols=84 Identities=13% Similarity=0.038 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+..++++.+++.|++.|-++....+. .+...+ ++++++.+++|||++||+ +++++.++++..+||.|++|+++..+
T Consensus 267 ~~~~la~~l~~~Gvd~i~v~~~~~~~--~~~~~~-~~~ir~~~~iPvi~~G~i-t~~~a~~~l~~g~aD~V~igR~~l~~ 342 (379)
T 3aty_A 267 LTKHLCKKIEPLSLAYLHYLRGDMVN--QQIGDV-VAWVRGSYSGVKISNLRY-DFEEADQQIREGKVDAVAFGAKFIAN 342 (379)
T ss_dssp HHHHHHHHHGGGCCSEEEEECSCTTS--CCCCCH-HHHHHTTCCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCcCC--CCccHH-HHHHHHHCCCcEEEECCC-CHHHHHHHHHcCCCeEEEecHHHHhC
Confidence 35789999999999999888643222 223336 889999999999999999 99999999975559999999999988
Q ss_pred CCCHHHHH
Q 045794 559 EVPIQSVK 566 (578)
Q Consensus 559 ~~~~~~~~ 566 (578)
+.-+..++
T Consensus 343 P~l~~k~~ 350 (379)
T 3aty_A 343 PDLVERAQ 350 (379)
T ss_dssp TTHHHHHH
T ss_pred cHHHHHHH
Confidence 87666655
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.7e-05 Score=82.92 Aligned_cols=80 Identities=14% Similarity=0.007 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+..++++.+++.|++.|-++.-. .|. ++++++++.+++|||++||+ +++++.++++..+||.|++|+++..+
T Consensus 243 ~~~~la~~l~~~Gvd~i~v~~~~-----~~~--~~~~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~iGR~~lan 314 (362)
T 4ab4_A 243 TFTYVARELGKRGIAFICSRERE-----ADD--SIGPLIKEAFGGPYIVNERF-DKASANAALASGKADAVAFGVPFIAN 314 (362)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCC-----CTT--CCHHHHHHHHCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred HHHHHHHHHHHhCCCEEEECCCC-----CCH--HHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHhC
Confidence 35789999999999999887644 233 46778888889999999999 99999999975559999999999988
Q ss_pred CCCHHHHH
Q 045794 559 EVPIQSVK 566 (578)
Q Consensus 559 ~~~~~~~~ 566 (578)
+.-+..++
T Consensus 315 Pdl~~k~~ 322 (362)
T 4ab4_A 315 PDLPARLA 322 (362)
T ss_dssp TTHHHHHH
T ss_pred cHHHHHHH
Confidence 87666555
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.8e-06 Score=81.65 Aligned_cols=192 Identities=17% Similarity=0.142 Sum_probs=110.3
Q ss_pred ccceeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHH
Q 045794 265 KLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQ 344 (578)
Q Consensus 265 ~~~~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~ 344 (578)
|.+.++|-++|+.+ ..+-+++++.+ +.|++.+.+ .+.-.. ..-++
T Consensus 4 m~~~~lilalD~~~---------------------------~~~~~~~~~~~-~~~vd~ie~-g~~~~~------~~G~~ 48 (218)
T 3jr2_A 4 MTKPMIQIALDQTN---------------------------LTDAVAVASNV-ASYVDVIEV-GTILAF------AEGMK 48 (218)
T ss_dssp -CCCEEEEEECCSS---------------------------HHHHHHHHHHH-GGGCSEEEE-CHHHHH------HHTTH
T ss_pred CCCCCeEEEeCCCC---------------------------HHHHHHHHHHh-cCCceEEEe-CcHHHH------hcCHH
Confidence 44678899988761 12445666664 346775553 111000 01146
Q ss_pred HHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhC
Q 045794 345 VLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY 423 (578)
Q Consensus 345 ~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (578)
+|+++++.. +.|+.+..-+.+. |+ ..++.+.++|||.+++-...-.. .+ .+.+ +..+++
T Consensus 49 ~i~~lr~~~~~~~i~ld~~l~d~--------p~-~~~~~~~~aGad~i~vh~~~~~~---~~-------~~~~-~~~~~~ 108 (218)
T 3jr2_A 49 AVSTLRHNHPNHILVCDMKTTDG--------GA-ILSRMAFEAGADWITVSAAAHIA---TI-------AACK-KVADEL 108 (218)
T ss_dssp HHHHHHHHCTTSEEEEEEEECSC--------HH-HHHHHHHHHTCSEEEEETTSCHH---HH-------HHHH-HHHHHH
T ss_pred HHHHHHHhCCCCcEEEEEeeccc--------HH-HHHHHHHhcCCCEEEEecCCCHH---HH-------HHHH-HHHHHh
Confidence 788888763 5677654433221 21 24788999999999885433221 00 0223 334556
Q ss_pred CCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEE-eccCC
Q 045794 424 GNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILL-NCIDC 502 (578)
Q Consensus 424 g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~-tdi~~ 502 (578)
|.. +.+|+-. ..++ +-++.+.+.|++.+++ +..+.
T Consensus 109 g~~---~~~d~l~----------------------------------------~~T~-~~~~~~~~~g~d~v~~~~~~~~ 144 (218)
T 3jr2_A 109 NGE---IQIEIYG----------------------------------------NWTM-QDAKAWVDLGITQAIYHRSRDA 144 (218)
T ss_dssp TCE---EEEECCS----------------------------------------SCCH-HHHHHHHHTTCCEEEEECCHHH
T ss_pred CCc---cceeeee----------------------------------------cCCH-HHHHHHHHcCccceeeeecccc
Confidence 632 2223221 1133 4566677789998875 33221
Q ss_pred --CCCCCCCCHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 503 --DGQGKGFDMDLIKLISDA--VSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 503 --dG~~~G~d~~li~~l~~~--~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
.|.. ...+.++++++. .++|+++.||| +++.+.++.+ .|++++++||++....
T Consensus 145 ~~~g~~--~~~~~l~~i~~~~~~~~pi~v~GGI-~~~~~~~~~~-aGAd~vvvGsaI~~a~ 201 (218)
T 3jr2_A 145 ELAGIG--WTTDDLDKMRQLSALGIELSITGGI-VPEDIYLFEG-IKTKTFIAGRALAGAE 201 (218)
T ss_dssp HHHTCC--SCHHHHHHHHHHHHTTCEEEEESSC-CGGGGGGGTT-SCEEEEEESGGGSHHH
T ss_pred ccCCCc--CCHHHHHHHHHHhCCCCCEEEECCC-CHHHHHHHHH-cCCCEEEEchhhcCCC
Confidence 1211 233344444443 47999999999 5899999885 9999999999987543
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00015 Score=70.88 Aligned_cols=191 Identities=12% Similarity=0.050 Sum_probs=121.9
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+-.+..+...+.|++++|+==.|+..- .+-.--..+++++++.+ +.|+.+-==|.+.+. -++.+.+
T Consensus 18 ~~l~~~i~~~~~~g~d~iHvDvmDg~fv--pn~t~G~~~v~~lr~~~p~~~~dvhLmv~dp~~----------~i~~~~~ 85 (227)
T 1tqx_A 18 SKLAEETQRMESLGAEWIHLDVMDMHFV--PNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEK----------YVPLLKT 85 (227)
T ss_dssp GGHHHHHHHHHHTTCSEEEEEEEBSSSS--SCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGG----------GGGGCTT
T ss_pred hhHHHHHHHHHHcCCCEEEEEEEeCCcC--cchhcCHHHHHHHHHhCCCCcEEEEEEEcCHHH----------HHHHHHh
Confidence 3555667777788999999533354210 11112258899999877 677776655666443 1333433
Q ss_pred cCcceeecchhhhc-cchhhhhccccCCchHHH---HHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 386 SGADKISIGSDAVY-AAEDYLKTGVKTGKSSLE---QISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~-~~~~~~~~~~~~~~~~l~---~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
||.+.+=-.+-. +. ...++ ++ +++|. ++.+++...
T Consensus 86 --Ad~itvH~ea~~~~~-----------~~~i~~~~~i-~~~G~-k~gvalnp~-------------------------- 124 (227)
T 1tqx_A 86 --SNQLTFHFEALNEDT-----------ERCIQLAKEI-RDNNL-WCGISIKPK-------------------------- 124 (227)
T ss_dssp --SSEEEEEGGGGTTCH-----------HHHHHHHHHH-HTTTC-EEEEEECTT--------------------------
T ss_pred --CCEEEEeecCCccCH-----------HHHHHHHHHH-HHcCC-eEEEEeCCC--------------------------
Confidence 888877444433 21 13444 44 56774 455555211
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcC-CcEEEEeccCCCCCCC--CC-CHHHHHHHHhhC-CCcEEEecCCCCHHH
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLG-AGEILLNCIDCDGQGK--GF-DMDLIKLISDAV-SIPVIASSGAGAVEH 536 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G-~~~ii~tdi~~dG~~~--G~-d~~li~~l~~~~-~ipVIasGGi~s~eD 536 (578)
++.+.++.+.+.| ++.|+++.+...-..+ .+ .++.++++++.. ++++.+.|||. .+.
T Consensus 125 -----------------tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~-~~t 186 (227)
T 1tqx_A 125 -----------------TDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLN-IET 186 (227)
T ss_dssp -----------------SCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCC-HHH
T ss_pred -----------------CcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCeEEEECCCC-HHH
Confidence 2355667777776 9999999876532222 22 478888888776 78999999995 789
Q ss_pred HHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 537 FSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 537 i~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+.++.+ .|++.+++||+++..+- +.+..+.|+
T Consensus 187 i~~~~~-aGAd~~V~GsaIf~~~d-~~~~i~~l~ 218 (227)
T 1tqx_A 187 TEISAS-HGANIIVAGTSIFNAED-PKYVIDTMR 218 (227)
T ss_dssp HHHHHH-HTCCEEEESHHHHTCSS-HHHHHHHHH
T ss_pred HHHHHH-cCCCEEEEeHHHhCCCC-HHHHHHHHH
Confidence 999985 99999999999986543 444444443
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2.2e-05 Score=81.46 Aligned_cols=95 Identities=17% Similarity=0.076 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCC-CCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDF-PLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~-~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+++++|+.+.+.|++.||+.+-...... ......+++.++++++.+++||+++|||++.++ ++++++
T Consensus 229 ~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~-----------a~~~l~ 297 (338)
T 1z41_A 229 ADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSM-----------AEEILQ 297 (338)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHH-----------HHHHHH
Confidence 47889999999999999999875421110 112234688899999999999999999999866 999999
Q ss_pred cC-cceeecchhhhccchhhhhccccCCchHHHHHHHhCC
Q 045794 386 SG-ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG 424 (578)
Q Consensus 386 ~G-a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (578)
.| ||.|.+|+.++.| |++++++.+.++
T Consensus 298 ~G~aD~V~iGR~~i~n------------Pdl~~ki~~~~~ 325 (338)
T 1z41_A 298 NGRADLIFIGRELLRD------------PFFARTAAKQLN 325 (338)
T ss_dssp TTSCSEEEECHHHHHC------------TTHHHHHHHHTT
T ss_pred cCCceEEeecHHHHhC------------chHHHHHHcCCC
Confidence 99 9999999999985 477788888775
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00028 Score=70.55 Aligned_cols=178 Identities=19% Similarity=0.172 Sum_probs=116.7
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChH------HHHHHHH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSL------EVASEYF 384 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~------~~~~~~l 384 (578)
+-|....+.||++|.+-|==. .++ -.+...+++.+.+.+.+||.+ =||-.. -.|+|... ++++.+.
T Consensus 50 ~~a~~A~~gGAdRIELc~~l~-~GG---lTPS~g~i~~a~~~~~ipV~v--MIRPRg--GdF~Ys~~E~~~M~~dI~~~~ 121 (287)
T 3iwp_A 50 ESAVNAERGGADRIELCSGLS-EGG---TTPSMGVLQVVKQSVQIPVFV--MIRPRG--GDFLYSDREIEVMKADIRLAK 121 (287)
T ss_dssp HHHHHHHHHTCSEEEECBCGG-GTC---BCCCHHHHHHHHTTCCSCEEE--ECCSSS--SCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEECCCCC-CCC---CCCCHHHHHHHHHhcCCCeEE--EEecCC--CCcccCHHHHHHHHHHHHHHH
Confidence 445555678999999874211 122 256688999998888899876 344431 13777743 4788888
Q ss_pred HcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
++|||.|++|...-+. ..+.+.++++.+.-+.-.+++ =+.||.
T Consensus 122 ~~GAdGvVfG~L~~dg---------~iD~~~~~~Li~~a~~l~vTF-------------------HRAFD~--------- 164 (287)
T 3iwp_A 122 LYGADGLVFGALTEDG---------HIDKELCMSLMAICRPLPVTF-------------------HRAFDM--------- 164 (287)
T ss_dssp HTTCSEEEECCBCTTS---------CBCHHHHHHHHHHHTTSCEEE-------------------CGGGGG---------
T ss_pred HcCCCEEEEeeeCCCC---------CcCHHHHHHHHHHcCCCcEEE-------------------ECchhc---------
Confidence 9999999999633321 223466666665543222222 012232
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~ 542 (578)
-.++.+.++.+.++|++.|+...- ..... -.++.++++.+.. .++|+++||| +.+.+.++.+
T Consensus 165 ------------~~d~~~Ale~Li~lGvdrILTSG~-~~~a~--~Gl~~Lk~Lv~~a~~rI~ImaGGGV-~~~Ni~~l~~ 228 (287)
T 3iwp_A 165 ------------VHDPMAALETLLTLGFERVLTSGC-DSSAL--EGLPLIKRLIEQAKGRIVVMPGGGI-TDRNLQRILE 228 (287)
T ss_dssp ------------CSCHHHHHHHHHHHTCSEEEECTT-SSSTT--TTHHHHHHHHHHHTTSSEEEECTTC-CTTTHHHHHH
T ss_pred ------------cCCHHHHHHHHHHcCCCEEECCCC-CCChH--HhHHHHHHHHHHhCCCCEEEECCCc-CHHHHHHHHH
Confidence 125788999999999999996442 22122 2568888886654 4999999999 5588998876
Q ss_pred hcCchHH
Q 045794 543 KTNASAA 549 (578)
Q Consensus 543 ~~G~~gv 549 (578)
.+|++.+
T Consensus 229 ~tG~~~~ 235 (287)
T 3iwp_A 229 GSGATEF 235 (287)
T ss_dssp HHCCSEE
T ss_pred hhCCCEE
Confidence 6787643
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.7e-05 Score=79.74 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCC-CCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKG-FDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G-~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+.++.+.+.|++.|++.+-.......+ +.++.+.++++.+ ++|||++|||++.+|+.+++. +||++|++|+++..
T Consensus 228 ~e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLa-lGA~aV~iGr~~l~ 306 (352)
T 3sgz_A 228 KEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALA-LGARCIFLGRPILW 306 (352)
T ss_dssp HHHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHH-TTCSEEEESHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 5779999999999999976322111223 4789999998877 799999999999999999996 99999999998864
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=9e-06 Score=85.69 Aligned_cols=76 Identities=18% Similarity=0.093 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCcEEEEecc---CCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCI---DCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi---~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+.++.+.+.|++.|.+..- ..++ ..++++.+.++++.+++|||++|||++.+|+.+++. +||++|++|++++.
T Consensus 236 ~e~a~~a~~aGad~I~vs~~gg~~~d~--~~~~~~~l~~v~~~~~~pVia~GGI~~~~dv~kal~-~GAdaV~iGr~~l~ 312 (380)
T 1p4c_A 236 AEDADRCIAEGADGVILSNHGGRQLDC--AISPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALA-LGAEAVLLGRATLY 312 (380)
T ss_dssp HHHHHHHHHTTCSEEEECCGGGTSCTT--CCCGGGTHHHHHHHHCSCEEECSSCCSHHHHHHHHH-TTCSCEEESHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCcCCC--CcCHHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHH-hCCcHhhehHHHHH
Confidence 57899999999999998321 1122 124789999999988899999999999999999996 99999999999986
Q ss_pred CC
Q 045794 558 KE 559 (578)
Q Consensus 558 ~~ 559 (578)
+.
T Consensus 313 ~~ 314 (380)
T 1p4c_A 313 GL 314 (380)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=5.5e-05 Score=79.31 Aligned_cols=89 Identities=27% Similarity=0.390 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCC---CC------C--CC-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchH
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQ---GK------G--FD-MDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASA 548 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~---~~------G--~d-~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~g 548 (578)
.+.++.+++.|++.|++......|. .. + .+ +++++++++.+++|||++|||.+.+++.+++. .|+++
T Consensus 155 ~~~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~~~~~~l~-~GAd~ 233 (369)
T 3bw2_A 155 PEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGGQIAAVLA-AGADA 233 (369)
T ss_dssp HHHHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH-TTCSE
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHH-cCCCE
Confidence 3457889999999999866543221 10 1 34 89999999888999999999999999999996 89999
Q ss_pred HhhhhhhccCCCC--HHHHHHHHH
Q 045794 549 ALAAGIFHRKEVP--IQSVKEHLY 570 (578)
Q Consensus 549 v~vgsa~~~~~~~--~~~~~~~l~ 570 (578)
|.+||++...+.. -...++.+.
T Consensus 234 V~vGs~~~~~~e~~~~~~~k~~i~ 257 (369)
T 3bw2_A 234 AQLGTAFLATDESGAPGPHKRALT 257 (369)
T ss_dssp EEESHHHHTSTTCCCCHHHHHHTT
T ss_pred EEEChHHhCCcccCccHHHHHHHH
Confidence 9999999765432 345555443
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=3.3e-05 Score=80.46 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEe--cccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLN--ITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~D--l~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+.+++|+.+.+.|++.||+.. .............+++.++++++.+++||...|||++.++ +++++
T Consensus 239 ~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~-----------a~~~l 307 (349)
T 3hgj_A 239 EDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQ-----------AETLL 307 (349)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHH-----------HHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHH-----------HHHHH
Confidence 4688999999999999999875 2211000112245788999999989999999999999866 99999
Q ss_pred HcC-cceeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 385 RSG-ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 385 ~~G-a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
+.| ||.|.+|+.++.| |++.+++.+.+|.
T Consensus 308 ~~G~aD~V~iGR~~lan------------Pdl~~k~~~~l~~ 337 (349)
T 3hgj_A 308 QAGSADLVLLGRVLLRD------------PYFPLRAAKALGV 337 (349)
T ss_dssp HTTSCSEEEESTHHHHC------------TTHHHHHHHHTTC
T ss_pred HCCCceEEEecHHHHhC------------chHHHHHHHHCCC
Confidence 999 9999999999985 4778899998874
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=97.89 E-value=1.3e-05 Score=78.19 Aligned_cols=73 Identities=22% Similarity=0.187 Sum_probs=57.2
Q ss_pred CHHHHHHHHH---H-cCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHH
Q 045794 308 KPVELARQYY---K-EGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 308 ~p~~~a~~~~---~-~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+|.+++..-. + .|...+|+.- ++.. + +.++++++++.+ ++|+.+|||||+.|+ +++
T Consensus 143 ~~e~iaa~A~~a~~~~g~~~vY~e~-sG~~----g---~~~~v~~ir~~~~~~pv~vGfGI~~~e~-----------a~~ 203 (235)
T 3w01_A 143 TTEDLEAYAQMVNHMYRLPVMYIEY-SGIY----G---DVSKVQAVSEHLTETQLFYGGGISSEQQ-----------ATE 203 (235)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEEC-TTSC----C---CHHHHHHHHTTCSSSEEEEESCCCSHHH-----------HHH
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEec-CCCc----C---CHHHHHHHHHhcCCCCEEEECCcCCHHH-----------HHH
Confidence 5555544422 2 3888888765 6542 2 478999999988 899999999999976 899
Q ss_pred HHHcCcceeecchhhhcc
Q 045794 383 YFRSGADKISIGSDAVYA 400 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~ 400 (578)
+.+ |||.||+||+.+++
T Consensus 204 ~~~-gAD~VVVGSai~~~ 220 (235)
T 3w01_A 204 MAA-IADTIIVGDIIYKD 220 (235)
T ss_dssp HHT-TSSEEEECTHHHHC
T ss_pred HHc-CCCEEEECCceecC
Confidence 887 99999999999985
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=97.89 E-value=3.2e-05 Score=76.04 Aligned_cols=187 Identities=10% Similarity=-0.004 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
+..+.++...+.|++++|+=-.|+..- .+-.--.++++++++.+ ++++.+. +.+ .-++.+++
T Consensus 27 ~l~~~i~~~~~~gad~lhvDvmDG~fv--pn~t~G~~~v~~lr~~~~~DvhLMv~----~p~----------~~i~~~~~ 90 (237)
T 3cu2_A 27 QLNEEVTTLLENQINVLHFDIADGQFS--SLFTVGAIGIKYFPTHCFKDVHLMVR----NQL----------EVAKAVVA 90 (237)
T ss_dssp GHHHHHHHHHHTTCCEEEEEEEBSSSS--SCBCBCTHHHHTSCTTSEEEEEEECS----CHH----------HHHHHHHH
T ss_pred cHHHHHHHHHHcCCCEEEEEEecCccc--cchhhhHHHHHHHhhhCCCCeEEEEE----CHH----------HHHHHHHH
Confidence 444567777788999999533354210 11111236788887765 5555432 211 34888999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhC---------CCCeEEEEEeccccccCCCCccccceeeeccCC
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY---------GNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLG 456 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~ 456 (578)
+|||.+.+=-.+..+. .+.++.+. .+ |. ++.+++....
T Consensus 91 aGAd~itvH~ea~~~~-----------~~~i~~i~-~~~~~~~~~~~g~-~~gv~l~p~T-------------------- 137 (237)
T 3cu2_A 91 NGANLVTLQLEQYHDF-----------ALTIEWLA-KQKTTYANQVYPV-LIGACLCPET-------------------- 137 (237)
T ss_dssp TTCSEEEEETTCTTSH-----------HHHHHHHT-TCEEEETTEEEEC-EEEEEECTTS--------------------
T ss_pred cCCCEEEEecCCcccH-----------HHHHHHHH-hcccccccccCCc-eEEEEEeCCC--------------------
Confidence 9999988754444321 13445553 34 52 4555552111
Q ss_pred CCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC--CCCCCC-CHHHHHHHHhhC-----CCcEEEe
Q 045794 457 PNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD--GQGKGF-DMDLIKLISDAV-----SIPVIAS 528 (578)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d--G~~~G~-d~~li~~l~~~~-----~ipVIas 528 (578)
+.+.++.+.+ +++.|+++.+... |....+ .++.++++++.. ++||.+-
T Consensus 138 -----------------------p~~~l~~~l~-~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vd 193 (237)
T 3cu2_A 138 -----------------------PISELEPYLD-QIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINID 193 (237)
T ss_dssp -----------------------CGGGGTTTTT-TCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEE
T ss_pred -----------------------hHHHHHHHhh-cCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 1222222222 5898888766442 221122 356677777665 5899999
Q ss_pred cCCCCHHHHHHHHHh--cCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 529 SGAGAVEHFSDVFRK--TNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 529 GGi~s~eDi~~l~~~--~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
|||. .+.+.++. + .|++++++||++... ++.+..+.|++
T Consensus 194 GGI~-~~~~~~~~-~~~aGad~~VvGSaIf~~--d~~~~~~~l~~ 234 (237)
T 3cu2_A 194 GSMT-LELAKYFK-QGTHQIDWLVSGSALFSG--ELKTNLKVWKS 234 (237)
T ss_dssp SSCC-HHHHHHHH-HSSSCCCCEEECGGGGSS--CHHHHHHHHHH
T ss_pred CCcC-HHHHHHHH-HhCCCCcEEEEeeHHhCC--CHHHHHHHHHH
Confidence 9995 78899887 7 899999999999865 56666555543
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=3.7e-05 Score=80.54 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCC--CCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDF--PLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~--~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+.+++|+.+.+.|++.||+..-...... ......+.+.++++++.+++||.+.|||++.++ +++++
T Consensus 246 ~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~-----------a~~~l 314 (363)
T 3l5l_A 246 EESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQL-----------AEAAL 314 (363)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSSTTSHHH-----------HHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCCCCHHH-----------HHHHH
Confidence 47889999999999999998864311110 012234688899999989999999999999866 99999
Q ss_pred HcC-cceeecchhhhccchhhhhccccCCchHHHHHHHhCC
Q 045794 385 RSG-ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG 424 (578)
Q Consensus 385 ~~G-a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (578)
+.| ||.|.+|+.++.| |++.+++.+.+|
T Consensus 315 ~~G~aD~V~iGR~~lan------------Pdl~~k~~~~lg 343 (363)
T 3l5l_A 315 QANQLDLVSVGRAHLAD------------PHWAYFAAKELG 343 (363)
T ss_dssp HTTSCSEEECCHHHHHC------------TTHHHHHHHHTT
T ss_pred HCCCccEEEecHHHHhC------------chHHHHHHHHcC
Confidence 999 9999999999985 477889999887
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=4.1e-05 Score=86.58 Aligned_cols=89 Identities=18% Similarity=0.183 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCC------CC--CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHh
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDG------QG--KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAAL 550 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG------~~--~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~ 550 (578)
+..++++.+++.|++.|-++....+. .. .+..++.++++++.+++|||++||+.+++++.++++..+||+|+
T Consensus 229 ~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~ 308 (671)
T 1ps9_A 229 ETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVS 308 (671)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCCEEE
Confidence 35788999999999999876432221 11 23457899999999999999999999999999999744599999
Q ss_pred hhhhhccCCCCHHHHHH
Q 045794 551 AAGIFHRKEVPIQSVKE 567 (578)
Q Consensus 551 vgsa~~~~~~~~~~~~~ 567 (578)
+|+++..++..+..+++
T Consensus 309 ~gR~~l~~P~l~~k~~~ 325 (671)
T 1ps9_A 309 MARPFLADAELLSKAQS 325 (671)
T ss_dssp ESTHHHHCTTHHHHHHT
T ss_pred eCHHHHhCcHHHHHHHc
Confidence 99999988876666553
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.87 E-value=4.7e-05 Score=74.01 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=54.7
Q ss_pred HHHHHcCCcEEEEeccCCCCCC---CC--CC-HH-HHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 485 KAVEDLGAGEILLNCIDCDGQG---KG--FD-MD-LIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 485 ~~~~~~G~~~ii~tdi~~dG~~---~G--~d-~~-li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
+++.+.+.+-|-|+.++.-||. +- +| ++ ..+.+++.. ++||+++|||.+.++++.+.+ .|+||++||+++.
T Consensus 125 ~~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~-~gaDgvlVGsAi~ 203 (219)
T 2h6r_A 125 KAVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALD-LGAEGVLLASGVV 203 (219)
T ss_dssp HHHTTTCCSEEEECCCC--------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHT-TTCCCEEESHHHH
T ss_pred HHHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhh-CCCCEEEEcHHHh
Confidence 4455667877778887765544 22 23 33 334444444 789999999999999999874 8999999999998
Q ss_pred cCCCCHHHHHHHH
Q 045794 557 RKEVPIQSVKEHL 569 (578)
Q Consensus 557 ~~~~~~~~~~~~l 569 (578)
..+. +.++.+.|
T Consensus 204 ~~~d-~~~~~~~l 215 (219)
T 2h6r_A 204 KAKN-VEEAIREL 215 (219)
T ss_dssp TCSS-HHHHHHHH
T ss_pred Cccc-HHHHHHHH
Confidence 7654 44444444
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=2.3e-05 Score=85.70 Aligned_cols=182 Identities=19% Similarity=0.163 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccc-----cEEEeCCccccccCCCCccChHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFV-----PLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~-----pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+..++++.+.+.+...+.|+|=++..-|-. ..-++++.+...... .+.++.++.. ...++.++.
T Consensus 181 sl~ea~~~m~~~~i~~lpVVDe~g~lvGiI---T~~Dil~~~~~~~~~~d~~~~l~v~a~v~~--------~~~~e~~~~ 249 (503)
T 1me8_A 181 KLSEANKIIWEKKLNALPIIDDDQHLRYIV---FRKDYDRSQVCHNELVDSQKRYLVGAGINT--------RDFRERVPA 249 (503)
T ss_dssp --------------------------------------------CCCCBCTTSCBCCEEEECS--------SSHHHHHHH
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCeEEEEE---EecHHHHhhhcccchhccccccccccccCc--------hhHHHHHHH
Confidence 445677788888888899998433111111 112333333221110 1111111111 123677888
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCC-CeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN-QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
+.+.|++.+++.+..-. .... ++.++.+.+.++. -.+++ .
T Consensus 250 l~e~gv~~l~Vd~~~g~-~~~~--------~~~i~~lk~~~~~~~~Vi~----G-------------------------- 290 (503)
T 1me8_A 250 LVEAGADVLCIDSSDGF-SEWQ--------KITIGWIREKYGDKVKVGA----G-------------------------- 290 (503)
T ss_dssp HHHHTCSEEEECCSCCC-SHHH--------HHHHHHHHHHHGGGSCEEE----E--------------------------
T ss_pred HHhhhccceEEecccCc-ccch--------hhHHHHHHHhCCCCceEee----c--------------------------
Confidence 99999998888554222 1111 3667778777742 22332 0
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC-------CCCC-CCHHHHHHHHhhC---------CCc
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG-------QGKG-FDMDLIKLISDAV---------SIP 524 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG-------~~~G-~d~~li~~l~~~~---------~ip 524 (578)
++.-.+-++.+.+.|++.+.+ .+...+ ...| |.+..+.++.+.+ ++|
T Consensus 291 ---------------~V~t~~~a~~l~~aGad~I~V-g~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ip 354 (503)
T 1me8_A 291 ---------------NIVDGEGFRYLADAGADFIKI-GIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIP 354 (503)
T ss_dssp ---------------EECSHHHHHHHHHHTCSEEEE-CSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECC
T ss_pred ---------------cccCHHHHHHHHHhCCCeEEe-cccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCce
Confidence 112256788899999999987 543211 1113 4566777765543 699
Q ss_pred EEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 525 VIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 525 VIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
||++|||++..|+.+++. +||++|++|+.|.
T Consensus 355 via~GGi~~~~di~kAla-lGA~~V~iG~~~~ 385 (503)
T 1me8_A 355 VCSDGGIVYDYHMTLALA-MGADFIMLGRYFA 385 (503)
T ss_dssp EEEESCCCSHHHHHHHHH-TTCSEEEESHHHH
T ss_pred EEEeCCCCCHHHHHHHHH-cCCCEEEECchhh
Confidence 999999999999999996 9999999999983
|
| >4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii} | Back alignment and structure |
|---|
Probab=97.84 E-value=2.5e-05 Score=73.45 Aligned_cols=89 Identities=9% Similarity=0.207 Sum_probs=60.8
Q ss_pred CCCCcEEEEEE---CCCCCHHHHHHHHHHCCCeEEEeCCc------------------cC--CCCCCEEEECCCCCchHH
Q 045794 44 TSSDSVVTLLD---YGAGNVRSVRNAIRHLGFGIKDVQTP------------------ED--ILNANRLIFPGVGAFAAA 100 (578)
Q Consensus 44 ~~~~~~I~vld---~~~g~~~~i~~~L~~~Gv~v~~v~~~------------------~d--l~~~DGlILpGGg~~~~~ 100 (578)
..++++|.|+- |..--.....+.|++.|+++.++... ++ ..+||+||+|||..+. .
T Consensus 5 ~~t~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~-~ 83 (177)
T 4hcj_A 5 GKTNNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCI-T 83 (177)
T ss_dssp CCCCEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGG-G
T ss_pred ccCCCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHH-H
Confidence 34555566652 22112234467899999999887531 11 3579999999984321 1
Q ss_pred HHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 101 MDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 101 ~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
+ .....+.++++++.+.++||.+||.|-++|+.
T Consensus 84 l--~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~ 116 (177)
T 4hcj_A 84 L--WDDWRTQGLAKLFLDNQKIVAGIGSGVVIMAN 116 (177)
T ss_dssp G--TTCHHHHHHHHHHHHTTCEEEEETTHHHHHHH
T ss_pred H--hhCHHHHHHHHHHHHhCCEEEEecccHHHHHH
Confidence 1 11224678899999999999999999999998
|
| >3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A | Back alignment and structure |
|---|
Probab=97.83 E-value=3.6e-05 Score=71.20 Aligned_cols=85 Identities=21% Similarity=0.242 Sum_probs=60.9
Q ss_pred cEEEEEECCCC---CHHHHHHHHHHCCCeEEEeCCc------------------cCC--CCCCEEEECCCCCchHHHHHH
Q 045794 48 SVVTLLDYGAG---NVRSVRNAIRHLGFGIKDVQTP------------------EDI--LNANRLIFPGVGAFAAAMDVL 104 (578)
Q Consensus 48 ~~I~vld~~~g---~~~~i~~~L~~~Gv~v~~v~~~------------------~dl--~~~DGlILpGGg~~~~~~~~l 104 (578)
++|+|+=++.- -.....+.|+..|+++.++... +++ .++|.||+|||.. .. ...
T Consensus 3 ~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~--~~-~~~ 79 (168)
T 3l18_A 3 MKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKA--PE-IVR 79 (168)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSH--HH-HHT
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcC--HH-Hhc
Confidence 56888766421 2334577899999998887432 122 3599999999852 11 111
Q ss_pred HhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 105 NKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 105 ~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
....+.++++++.+.++||.+||.|.++|+.
T Consensus 80 ~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~ 110 (168)
T 3l18_A 80 LNEKAVMITRRMFEDDKPVASICHGPQILIS 110 (168)
T ss_dssp TCHHHHHHHHHHHHTTCCEEEETTTHHHHHH
T ss_pred cCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 2235778999999999999999999999998
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0015 Score=64.19 Aligned_cols=177 Identities=19% Similarity=0.178 Sum_probs=119.6
Q ss_pred HHHHHHHHHcCCCeEEEEe-cccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChH------HHHHH
Q 045794 310 VELARQYYKEGADEISFLN-ITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSL------EVASE 382 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~D-l~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~------~~~~~ 382 (578)
++-|..-.+.||++|=+.+ |. .+|. .+...+++.+.+.+.+||.+ =||--. .+|.|+.. ++++.
T Consensus 11 ~~~a~~A~~~GAdRIELc~~L~--~GGl---TPS~g~i~~~~~~~~ipv~v--MIRPR~--GdF~Ys~~E~~~M~~Di~~ 81 (256)
T 1twd_A 11 MECALTAQQNGADRVELCAAPK--EGGL---TPSLGVLKSVRQRVTIPVHP--IIRPRG--GDFCYSDGEFAAILEDVRT 81 (256)
T ss_dssp HHHHHHHHHTTCSEEEECBCGG--GTCB---CCCHHHHHHHHHHCCSCEEE--BCCSSS--SCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCcc--cCCC---CCCHHHHHHHHHHcCCceEE--EECCCC--CCCcCCHHHHHHHHHHHHH
Confidence 3556666788999999875 32 2332 56789999999888999987 455432 24888854 36778
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
+.++|++-||+|...-+. .++.+.++++.+.-+.-.+++ =|.||..
T Consensus 82 ~~~~GadGvV~G~Lt~dg---------~iD~~~~~~Li~~a~~~~vTF-------------------HRAfD~~------ 127 (256)
T 1twd_A 82 VRELGFPGLVTGVLDVDG---------NVDMPRMEKIMAAAGPLAVTF-------------------HRAFDMC------ 127 (256)
T ss_dssp HHHTTCSEEEECCBCTTS---------SBCHHHHHHHHHHHTTSEEEE-------------------CGGGGGC------
T ss_pred HHHcCCCEEEEeeECCCC---------CcCHHHHHHHHHHhCCCcEEE-------------------ECchhcc------
Confidence 889999999999754432 345677777775543322333 0223321
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~ 541 (578)
.++.+.++.+.++|+++|+ |+=....... .++.|+++.+.. .+-|+++|||. .+.+.++.
T Consensus 128 ---------------~d~~~ale~L~~lG~~rIL-TSG~~~~a~~--g~~~L~~Lv~~a~~i~Im~GgGv~-~~Ni~~l~ 188 (256)
T 1twd_A 128 ---------------ANPLYTLNNLAELGIARVL-TSGQKSDALQ--GLSKIMELIAHRDAPIIMAGAGVR-AENLHHFL 188 (256)
T ss_dssp ---------------SCHHHHHHHHHHHTCCEEE-ECTTSSSTTT--THHHHHHHHTSSSCCEEEEESSCC-TTTHHHHH
T ss_pred ---------------CCHHHHHHHHHHcCCCEEE-CCCCCCCHHH--HHHHHHHHHHhhCCcEEEecCCcC-HHHHHHHH
Confidence 3678899999999999999 4322222222 567888886533 68899999994 57788887
Q ss_pred HhcCchHH
Q 045794 542 RKTNASAA 549 (578)
Q Consensus 542 ~~~G~~gv 549 (578)
.+|+..+
T Consensus 189 -~tGv~e~ 195 (256)
T 1twd_A 189 -DAGVLEV 195 (256)
T ss_dssp -HHTCSEE
T ss_pred -HcCCCeE
Confidence 5887644
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.73 E-value=4.2e-05 Score=81.50 Aligned_cols=87 Identities=18% Similarity=0.217 Sum_probs=70.3
Q ss_pred CHHHHHHHHHH-cCCcEEEEeccCC-----CCCCCC--CCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchH
Q 045794 479 GAYELAKAVED-LGAGEILLNCIDC-----DGQGKG--FDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASA 548 (578)
Q Consensus 479 ~~~e~~~~~~~-~G~~~ii~tdi~~-----dG~~~G--~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~g 548 (578)
+..++++.+++ .|++.|-++..+. .....| .+++.++.+++.+ ++|||++|||.+++++.++++ . ||.
T Consensus 265 d~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~-~-aDl 342 (419)
T 3l5a_A 265 EFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIASGGINSPESALDALQ-H-ADM 342 (419)
T ss_dssp HHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEECSSCCSHHHHHHHGG-G-CSE
T ss_pred HHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHH-h-CCc
Confidence 46889999999 9999999987653 112233 3567888888877 699999999999999999997 5 999
Q ss_pred HhhhhhhccCCCCHHHHHH
Q 045794 549 ALAAGIFHRKEVPIQSVKE 567 (578)
Q Consensus 549 v~vgsa~~~~~~~~~~~~~ 567 (578)
|++|+++..++.-+..+++
T Consensus 343 VaiGR~~IanPdlv~ki~~ 361 (419)
T 3l5a_A 343 VGMSSPFVTEPDFVHKLAE 361 (419)
T ss_dssp EEESTHHHHCTTHHHHHHT
T ss_pred HHHHHHHHHCcHHHHHHHc
Confidence 9999999988876665553
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=97.73 E-value=5.6e-05 Score=74.54 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHcCCC-eEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGAD-EISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~-~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+|.+.++.+.+. ++ .++++.+++..++..+ ...+++.++++++.+++||++||||++.++ +++++
T Consensus 143 ~t~~e~~~~~~~~-~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~-----------i~~~~ 210 (248)
T 1geq_A 143 NTPDERLKVIDDM-TTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREH-----------VVSLL 210 (248)
T ss_dssp TCCHHHHHHHHHH-CSSEEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHH-----------HHHHH
T ss_pred CCHHHHHHHHHhc-CCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHH-----------HHHHH
Confidence 3677888888766 55 8888888664332111 134688999999988999999999999866 99999
Q ss_pred HcCcceeecchhhhcc
Q 045794 385 RSGADKISIGSDAVYA 400 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~ 400 (578)
++||+.|++||+.++.
T Consensus 211 ~~Gad~vivGsai~~~ 226 (248)
T 1geq_A 211 KEGANGVVVGSALVKI 226 (248)
T ss_dssp HTTCSEEEECHHHHHH
T ss_pred HcCCCEEEEcHHHHhh
Confidence 9999999999998874
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=3.1e-05 Score=81.81 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+.++.+.+.|++.|++.+-.......|+ .++.+.++++.+ ++|||++|||++.+|+.+++. +||++|++|+++..
T Consensus 263 ~e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kala-lGAd~V~iGr~~l~ 341 (392)
T 2nzl_A 263 GDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALA-LGAKAVFVGRPIVW 341 (392)
T ss_dssp HHHHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHH-TTCSEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHH-hCCCeeEECHHHHH
Confidence 67799999999999998543221123344 778999998877 599999999999999999996 99999999998876
Q ss_pred C
Q 045794 558 K 558 (578)
Q Consensus 558 ~ 558 (578)
+
T Consensus 342 ~ 342 (392)
T 2nzl_A 342 G 342 (392)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=4.8e-05 Score=77.53 Aligned_cols=83 Identities=22% Similarity=0.336 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecc------c-CC--------CCCCCC---chhHHHHHHHhhhccccEEEeCCcccccc
Q 045794 307 GKPVELARQYYKEGADEISFLNIT------G-FR--------DFPLGD---LPMLQVLRLTSENVFVPLTVGGGIRDFTD 368 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~------~-~~--------~~~~~~---~~~~~~i~~i~~~~~~pi~~gGGir~~~d 368 (578)
.++.++|+.+.+.|++.|++.+.. . .+ ++..+. ...++.++++++.+++||.+.|||++.+|
T Consensus 176 ~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GGI~~~~d 255 (311)
T 1ep3_A 176 TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQD 255 (311)
T ss_dssp SCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECCcCCHHH
Confidence 477899999999999999996532 1 00 000010 12368899999888999999999999876
Q ss_pred CCCCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 369 ANGRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+.+++++|||.|.+||..+.+
T Consensus 256 -----------~~~~l~~GAd~V~vg~~~l~~ 276 (311)
T 1ep3_A 256 -----------VLEMYMAGASAVAVGTANFAD 276 (311)
T ss_dssp -----------HHHHHHHTCSEEEECTHHHHC
T ss_pred -----------HHHHHHcCCCEEEECHHHHcC
Confidence 999999999999999999985
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00014 Score=75.68 Aligned_cols=123 Identities=14% Similarity=0.255 Sum_probs=83.6
Q ss_pred HHHHHHHHHc--CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRS--GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~--Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++.+++. |++.+.+.+.. .+++.+ ++.++++.+.++.-.|++ +.
T Consensus 120 ~~~~~~l~~~~~g~~~i~i~~~~-g~~~~~--------~~~i~~lr~~~~~~~vi~----g~------------------ 168 (351)
T 2c6q_A 120 FEQLEQILEAIPQVKYICLDVAN-GYSEHF--------VEFVKDVRKRFPQHTIMA----GN------------------ 168 (351)
T ss_dssp HHHHHHHHHHCTTCCEEEEECSC-TTBHHH--------HHHHHHHHHHCTTSEEEE----EE------------------
T ss_pred HHHHHHHHhccCCCCEEEEEecC-CCcHHH--------HHHHHHHHHhcCCCeEEE----Ee------------------
Confidence 4678888887 99977774322 122222 367888888884222332 00
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC--------CCC-CCHHHHHHHHh---hCC
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ--------GKG-FDMDLIKLISD---AVS 522 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~--------~~G-~d~~li~~l~~---~~~ 522 (578)
+...+.++.+.+.|++.|.+. .. -|. ..| +.+..+.++.+ ..+
T Consensus 169 -----------------------v~t~e~A~~a~~aGaD~I~v~-~g-~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ 223 (351)
T 2c6q_A 169 -----------------------VVTGEMVEELILSGADIIKVG-IG-PGSVCTTRKKTGVGYPQLSAVMECADAAHGLK 223 (351)
T ss_dssp -----------------------ECSHHHHHHHHHTTCSEEEEC-SS-CSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTT
T ss_pred -----------------------CCCHHHHHHHHHhCCCEEEEC-CC-CCcCcCccccCCCCccHHHHHHHHHHHHhhcC
Confidence 112578899999999999763 11 111 012 45556666543 347
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 523 IPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 523 ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
+|||++|||++..|+.+++. +||++|++|++|.
T Consensus 224 ipvIa~GGI~~g~di~kAla-lGA~~V~vG~~fl 256 (351)
T 2c6q_A 224 GHIISDGGCSCPGDVAKAFG-AGADFVMLGGMLA 256 (351)
T ss_dssp CEEEEESCCCSHHHHHHHHH-TTCSEEEESTTTT
T ss_pred CcEEEeCCCCCHHHHHHHHH-cCCCceeccHHHh
Confidence 99999999999999999996 9999999999985
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=4.4e-05 Score=80.01 Aligned_cols=77 Identities=18% Similarity=0.170 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+.++.+.+.|++.|.+.+-..-....|+ +++.+.++++.+ ++|||++|||++.+|+.+++. +||++|++|+++..
T Consensus 240 ~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kala-lGAd~V~iGr~~l~ 318 (368)
T 2nli_A 240 PEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALA-SGADVVALGRPVLF 318 (368)
T ss_dssp HHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHH-TTCSEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 57899999999999998653221223344 789999998877 699999999999999999996 99999999998865
Q ss_pred C
Q 045794 558 K 558 (578)
Q Consensus 558 ~ 558 (578)
+
T Consensus 319 ~ 319 (368)
T 2nli_A 319 G 319 (368)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00024 Score=81.17 Aligned_cols=87 Identities=14% Similarity=0.094 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccC---C-----CC--CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchH
Q 045794 479 GAYELAKAVEDLGAGEILLNCID---C-----DG--QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASA 548 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~---~-----dG--~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~g 548 (578)
+..++++.+++ +++.+-++... . .. ...++++++++++++.+++|||++||+.+++++.++++..+||+
T Consensus 239 ~~~~~~~~l~~-~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~aD~ 317 (729)
T 1o94_A 239 DGQKFVEMADS-LVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADI 317 (729)
T ss_dssp HHHHHHHHHGG-GCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEECCSCCCCHHHHHHHHHTTSCSB
T ss_pred HHHHHHHHHHh-hcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHCCCCCE
Confidence 46789999887 68877666532 1 11 12345789999999999999999999999999999998556999
Q ss_pred HhhhhhhccCCCCHHHHH
Q 045794 549 ALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 549 v~vgsa~~~~~~~~~~~~ 566 (578)
|++|+++..++.-+..++
T Consensus 318 V~~gR~~l~~P~~~~~~~ 335 (729)
T 1o94_A 318 IGCARPSIADPFLPQKVE 335 (729)
T ss_dssp EEESHHHHHCTTHHHHHH
T ss_pred EEeCchhhcCchHHHHHH
Confidence 999999998887665554
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=97.64 E-value=5.5e-05 Score=78.80 Aligned_cols=92 Identities=12% Similarity=0.077 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCC--CC---CCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRD--FP---LGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~--~~---~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
+.+++|+.+.+.|++.|++-.-.+..+ +. .....+.+.|+++++.+ ++||.+.|||++.+| ++
T Consensus 145 ~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~ed-----------a~ 213 (350)
T 3b0p_A 145 GLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEE-----------AL 213 (350)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHH-----------HH
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHH-----------HH
Confidence 578999999999999999865432110 00 01124688999999988 899999999999977 99
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY 423 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (578)
++++ |||.|.+|+.++.+ |.+++++.+.+
T Consensus 214 ~~l~-GaD~V~iGRa~l~~------------P~l~~~i~~~l 242 (350)
T 3b0p_A 214 FHLK-RVDGVMLGRAVYED------------PFVLEEADRRV 242 (350)
T ss_dssp HHHT-TSSEEEECHHHHHC------------GGGGTTHHHHT
T ss_pred HHHh-CCCEEEECHHHHhC------------cHHHHHHHHHh
Confidence 9998 99999999999985 35566776655
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0015 Score=62.99 Aligned_cols=178 Identities=16% Similarity=0.151 Sum_probs=115.3
Q ss_pred HHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHh---hhccccEEEeCCccccccCCCCccChH------HHHHHHHH
Q 045794 315 QYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTS---ENVFVPLTVGGGIRDFTDANGRHYSSL------EVASEYFR 385 (578)
Q Consensus 315 ~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~---~~~~~pi~~gGGir~~~d~~~~~~~~~------~~~~~~l~ 385 (578)
.-.+.||++|=+.+==+ .+|. .+...+++.+. +.+.+||.+ =||--. .+|.|+.. ++++.+.+
T Consensus 16 ~A~~~GAdRIELc~~L~-~GGl---TPS~g~i~~~~~~~~~~~ipV~v--MIRPR~--GdF~Ys~~E~~~M~~Di~~~~~ 87 (224)
T 2bdq_A 16 RLDKAIISRVELCDNLA-VGGT---TPSYGVIKEANQYLHEKGISVAV--MIRPRG--GNFVYNDLELRIMEEDILRAVE 87 (224)
T ss_dssp GCCTTTCCEEEEEBCGG-GTCB---CCCHHHHHHHHHHHHHTTCEEEE--ECCSSS--SCSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEcCCcc-cCCc---CCCHHHHHHHHHhhhhcCCceEE--EECCCC--CCCcCCHHHHHHHHHHHHHHHH
Confidence 33467999999875212 1332 56688888887 788899877 455432 24888854 36778889
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|++-||+|...-+. .++.+.++++.+.-+.-.+++ =|.||..+
T Consensus 88 ~GadGvV~G~Lt~dg---------~iD~~~~~~Li~~a~~~~vTF-------------------HRAFD~~~-------- 131 (224)
T 2bdq_A 88 LESDALVLGILTSNN---------HIDTEAIEQLLPATQGLPLVF-------------------HMAFDVIP-------- 131 (224)
T ss_dssp TTCSEEEECCBCTTS---------SBCHHHHHHHHHHHTTCCEEE-------------------CGGGGGSC--------
T ss_pred cCCCEEEEeeECCCC---------CcCHHHHHHHHHHhCCCeEEE-------------------ECchhccC--------
Confidence 999999999754432 345677777765433222333 12333221
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRK 543 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~ 543 (578)
..++.+.++.+.++|+++|+ |+=....+.---.++.++++.+.. .+-|+++|||+ .+.+.++.+.
T Consensus 132 -----------~~d~~~ale~L~~lGv~rIL-TSG~~~~~~a~~g~~~L~~Lv~~a~~ri~Im~GgGV~-~~Ni~~l~~~ 198 (224)
T 2bdq_A 132 -----------KSDQKKSIDQLVALGFTRIL-LHGSSNGEPIIENIKHIKALVEYANNRIEIMVGGGVT-AENYQYICQE 198 (224)
T ss_dssp -----------TTTHHHHHHHHHHTTCCEEE-ECSCSSCCCGGGGHHHHHHHHHHHTTSSEEEECSSCC-TTTHHHHHHH
T ss_pred -----------CcCHHHHHHHHHHcCCCEEE-CCCCCCCCcHHHHHHHHHHHHHhhCCCeEEEeCCCCC-HHHHHHHHHh
Confidence 23678899999999999999 442222111112467888875533 57899999995 5788888766
Q ss_pred cCchHH
Q 045794 544 TNASAA 549 (578)
Q Consensus 544 ~G~~gv 549 (578)
+|+..+
T Consensus 199 tGv~e~ 204 (224)
T 2bdq_A 199 TGVKQA 204 (224)
T ss_dssp HTCCEE
T ss_pred hCCCEE
Confidence 787543
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=7.9e-05 Score=76.51 Aligned_cols=90 Identities=22% Similarity=0.237 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH-
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR- 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~- 385 (578)
.++.++|+.+.+.|++.|++-.-... ++ .....+++.++++.+ ++||.+.|||++.+| ++++++
T Consensus 140 ~~~~~~a~~l~~~G~d~i~v~g~~~~-~~-~~~~~~~~~i~~i~~--~ipVi~~GgI~s~~d-----------a~~~l~~ 204 (318)
T 1vhn_A 140 NEVEEIYRILVEEGVDEVFIHTRTVV-QS-FTGRAEWKALSVLEK--RIPTFVSGDIFTPED-----------AKRALEE 204 (318)
T ss_dssp CCHHHHHHHHHHTTCCEEEEESSCTT-TT-TSSCCCGGGGGGSCC--SSCEEEESSCCSHHH-----------HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCcc-cc-CCCCcCHHHHHHHHc--CCeEEEECCcCCHHH-----------HHHHHHc
Confidence 46679999999999999998643221 11 111345677888877 899999999999977 899998
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhC
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY 423 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (578)
.|||.|.+|+.++.+ |+++.++.+.+
T Consensus 205 ~gad~V~iGR~~l~~------------P~l~~~~~~~~ 230 (318)
T 1vhn_A 205 SGCDGLLVARGAIGR------------PWIFKQIKDFL 230 (318)
T ss_dssp HCCSEEEESGGGTTC------------TTHHHHHHHHH
T ss_pred CCCCEEEECHHHHhC------------cchHHHHHHHH
Confidence 799999999999985 46677877654
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00014 Score=76.35 Aligned_cols=77 Identities=14% Similarity=0.072 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCcEEEEeccC-CCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCID-CDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~-~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+.++.+.+.|++.|.+..-. +......++++.+.++++.+ ++|||++|||++.+|+.+++. +||++|++|+++..
T Consensus 236 ~e~a~~a~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~-~GAdaV~iGr~~l~ 314 (370)
T 1gox_A 236 AEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALA-LGAAGVFIGRPVVF 314 (370)
T ss_dssp HHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHH-HTCSEEEECHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHH-cCCCEEeecHHHHH
Confidence 477899999999999984311 11111135789999998887 799999999999999999996 99999999998875
Q ss_pred C
Q 045794 558 K 558 (578)
Q Consensus 558 ~ 558 (578)
+
T Consensus 315 ~ 315 (370)
T 1gox_A 315 S 315 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=4.8e-05 Score=83.03 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCC--CCC-CCHHHHHHHHhhC-------CCcEEEecCCCCHHHHHHHHHhcCchHHh
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQ--GKG-FDMDLIKLISDAV-------SIPVIASSGAGAVEHFSDVFRKTNASAAL 550 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~--~~G-~d~~li~~l~~~~-------~ipVIasGGi~s~eDi~~l~~~~G~~gv~ 550 (578)
.+.++.+.+.|++.|++.+- -|+ ..+ +.++.+.++.+.+ ++|||++|||++.+|+.+++. +||++|+
T Consensus 354 ~e~A~~a~~aGad~I~vs~h--gG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLa-lGAdaV~ 430 (511)
T 1kbi_A 354 TEDVIKAAEIGVSGVVLSNH--GGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALC-LGAKGVG 430 (511)
T ss_dssp HHHHHHHHHTTCSEEEECCT--TTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHH-HTCSEEE
T ss_pred HHHHHHHHHcCCCEEEEcCC--CCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHH-cCCCEEE
Confidence 57799999999999999542 222 112 3678888887776 799999999999999999996 9999999
Q ss_pred hhhhhccCC
Q 045794 551 AAGIFHRKE 559 (578)
Q Consensus 551 vgsa~~~~~ 559 (578)
+|+++..+.
T Consensus 431 iGr~~l~~~ 439 (511)
T 1kbi_A 431 LGRPFLYAN 439 (511)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 999887643
|
| >2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00023 Score=67.05 Aligned_cols=86 Identities=17% Similarity=0.252 Sum_probs=59.1
Q ss_pred cEEEEEECCCCC---HHHHHHHHHHCCCeEEEeCCc-----------------------cCC--CCCCEEEECCCCCchH
Q 045794 48 SVVTLLDYGAGN---VRSVRNAIRHLGFGIKDVQTP-----------------------EDI--LNANRLIFPGVGAFAA 99 (578)
Q Consensus 48 ~~I~vld~~~g~---~~~i~~~L~~~Gv~v~~v~~~-----------------------~dl--~~~DGlILpGGg~~~~ 99 (578)
++|+|+-++--. +....+.|+..|+++.++... +++ .+||+||+|||.....
T Consensus 10 ~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~ 89 (190)
T 2vrn_A 10 KKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNPD 89 (190)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCchhHH
Confidence 568888654222 334567899999988776321 112 4699999999752111
Q ss_pred HHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 100 AMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 100 ~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
.. .....+.++|+++.+.++||.+||.|.++|+.
T Consensus 90 ~~--~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~ 123 (190)
T 2vrn_A 90 KL--RLEEGAMKFVRDMYDAGKPIAAICHGPWSLSE 123 (190)
T ss_dssp HH--TTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHH
T ss_pred HH--hhCHHHHHHHHHHHHcCCEEEEECHhHHHHHh
Confidence 11 11235788999999999999999999999998
|
| >2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00029 Score=67.44 Aligned_cols=85 Identities=12% Similarity=0.134 Sum_probs=59.0
Q ss_pred EEEEEECCCCC---HHHHHHHHHHCCCeEEEeCCcc---------------------C--CCCCCEEEECCCCCchHHHH
Q 045794 49 VVTLLDYGAGN---VRSVRNAIRHLGFGIKDVQTPE---------------------D--ILNANRLIFPGVGAFAAAMD 102 (578)
Q Consensus 49 ~I~vld~~~g~---~~~i~~~L~~~Gv~v~~v~~~~---------------------d--l~~~DGlILpGGg~~~~~~~ 102 (578)
+|+|+=++-.. .....+.|+.+|+++.++.... + ..+||+||+|||........
T Consensus 4 kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~l~ 83 (205)
T 2ab0_A 4 SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFR 83 (205)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHH
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHHhc
Confidence 47777554212 2344678999999988774311 1 25799999999842111111
Q ss_pred HHHhhcHHHHHHHHHhCCCCEEEEechH-HHHhh
Q 045794 103 VLNKTGMAEALCAYIEKDRPFLGICLGL-QLLFQ 135 (578)
Q Consensus 103 ~l~~~~l~~~i~~~~~~g~PIlGIClG~-QlLa~ 135 (578)
....+.++|+++.+.++||.+||.|. ++|+.
T Consensus 84 --~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~ 115 (205)
T 2ab0_A 84 --DSTLLVETVKQFHRSGRIVAAICAAPATVLVP 115 (205)
T ss_dssp --HCHHHHHHHHHHHHTTCEEEEETHHHHHHTTT
T ss_pred --cCHHHHHHHHHHHHcCCEEEEECHhHHHHHHH
Confidence 22357889999999999999999999 99998
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00017 Score=81.90 Aligned_cols=87 Identities=6% Similarity=-0.049 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC-----C--CCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhh
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC-----D--GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALA 551 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~-----d--G~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~v 551 (578)
+..++++.+++ +++.+-++.... . ....|.++++++++++.+++|||++||+.++++..++++..+||.|++
T Consensus 245 ~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~ 323 (690)
T 3k30_A 245 DIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLTTKPVVGVGRFTSPDAMVRQIKAGILDLIGA 323 (690)
T ss_dssp HHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGCSSCEEECSCCCCHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHh-hcCEEEEecccccccCCCCccCCccccHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHCCCcceEEE
Confidence 35788999988 788877765321 1 123456789999999999999999999999999999997556999999
Q ss_pred hhhhccCCCCHHHHH
Q 045794 552 AGIFHRKEVPIQSVK 566 (578)
Q Consensus 552 gsa~~~~~~~~~~~~ 566 (578)
|+++..+++-+..++
T Consensus 324 gR~~~~~P~~~~~~~ 338 (690)
T 3k30_A 324 ARPSIADPFLPNKIR 338 (690)
T ss_dssp SHHHHHCTTHHHHHH
T ss_pred cHHhHhCccHHHHHH
Confidence 999998887666655
|
| >2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00013 Score=69.30 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=60.7
Q ss_pred cEEEEEECC-CC--CHHHHHHHHHHCCCeEEEeCCc-------------------cCC---CCCCEEEECCCCCchHHHH
Q 045794 48 SVVTLLDYG-AG--NVRSVRNAIRHLGFGIKDVQTP-------------------EDI---LNANRLIFPGVGAFAAAMD 102 (578)
Q Consensus 48 ~~I~vld~~-~g--~~~~i~~~L~~~Gv~v~~v~~~-------------------~dl---~~~DGlILpGGg~~~~~~~ 102 (578)
++|+|+=++ .. -+....+.|+..|+++.++... +++ .++|.||+|||......+.
T Consensus 4 ~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~l~ 83 (197)
T 2rk3_A 4 KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLS 83 (197)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHHHH
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHHhh
Confidence 357777554 22 2234567899999998877421 123 6799999999842111111
Q ss_pred HHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 103 VLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 103 ~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
....+.++|+++.+.++||.+||.|-++|+.+
T Consensus 84 --~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 84 --ESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp --HCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred --hCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 22357889999999999999999999999983
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=7.6e-05 Score=77.12 Aligned_cols=76 Identities=18% Similarity=0.118 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCcEEEEecc--C--------CCC--------CCCC-CCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHH
Q 045794 481 YELAKAVEDLGAGEILLNCI--D--------CDG--------QGKG-FDMDLIKLISDAV-SIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi--~--------~dG--------~~~G-~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l 540 (578)
.+.++.+.+.|++.|.+.+- + +.. ...| +.++.+.++++.+ ++|||++|||.+.+|+.++
T Consensus 195 ~e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~ka 274 (332)
T 1vcf_A 195 REAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKA 274 (332)
T ss_dssp HHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHH
Confidence 45688999999999998432 1 210 2234 4678889998888 7999999999999999999
Q ss_pred HHhcCchHHhhhhhhcc
Q 045794 541 FRKTNASAALAAGIFHR 557 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~ 557 (578)
+. .||++|++|+++..
T Consensus 275 l~-~GAd~V~igr~~l~ 290 (332)
T 1vcf_A 275 LA-LGADLLAVARPLLR 290 (332)
T ss_dssp HH-HTCSEEEECGGGHH
T ss_pred HH-hCCChHhhhHHHHH
Confidence 96 89999999998874
|
| >4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00055 Score=64.56 Aligned_cols=85 Identities=13% Similarity=0.116 Sum_probs=58.3
Q ss_pred EEEEEECC-CC--CHHHHHHHHHHCCCeEEEeCCcc-------------------CC--CCCCEEEECCCCCchHHHHHH
Q 045794 49 VVTLLDYG-AG--NVRSVRNAIRHLGFGIKDVQTPE-------------------DI--LNANRLIFPGVGAFAAAMDVL 104 (578)
Q Consensus 49 ~I~vld~~-~g--~~~~i~~~L~~~Gv~v~~v~~~~-------------------dl--~~~DGlILpGGg~~~~~~~~l 104 (578)
+|+|+=++ .. -.....+.|++.|+++.++.... ++ ..||.||+|||......+ .
T Consensus 7 kv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~--~ 84 (190)
T 4e08_A 7 SALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAM--G 84 (190)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHH--H
T ss_pred EEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHh--h
Confidence 46665443 22 22245688999999998874321 12 368999999973111111 1
Q ss_pred HhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 105 NKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 105 ~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
....+.++|+++.+.++||.+||.|.++|+.
T Consensus 85 ~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~ 115 (190)
T 4e08_A 85 ESSLVGDLLRSQESGGGLIAAICAAPTVLAK 115 (190)
T ss_dssp HCHHHHHHHHHHHHTTCEEEEETTTHHHHHH
T ss_pred hCHHHHHHHHHHHHCCCEEEEECHHHHHHHH
Confidence 2235788999999999999999999999998
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0015 Score=63.56 Aligned_cols=164 Identities=15% Similarity=0.164 Sum_probs=99.9
Q ss_pred HHHHHHHhhhccccEEEeCCccccccCC-CCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 343 LQVLRLTSENVFVPLTVGGGIRDFTDAN-GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 343 ~~~i~~i~~~~~~pi~~gGGir~~~d~~-~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
...+..+++.+.+|+ |-.++...+ |-.|-... +..+.++||+.|+||-+..+....-+ ...-+.+.
T Consensus 48 ~~~L~~v~~~~~i~v----~aQdv~~~~~Ga~TGeis-~~~l~~~Ga~~VllghseRR~~~~e~--------~~k~~~A~ 114 (225)
T 1hg3_A 48 LVDLRMIAESVEIPV----FAQHIDPIKPGSHTGHVL-PEAVKEAGAVGTLLNHSENRMILADL--------EAAIRRAE 114 (225)
T ss_dssp HHHHHHHHHSCSSCB----EESCCCSCCSBSCTTCCC-HHHHHHTTCCEEEESCGGGCCBHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHhcCCce----eeeeCCcccCCCccCccc-HHHHHHcCCCEEEECcchhcCCHHHH--------HHHHHHHH
Confidence 455666666667777 233333221 33332221 56788899999999987743211111 11222344
Q ss_pred hCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC
Q 045794 422 VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID 501 (578)
Q Consensus 422 ~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~ 501 (578)
+.|= .+++++.- ..+ .+.+...+..-|-|..++
T Consensus 115 ~~GL-~~ivcVge---------------------------------------------~~e-~~~~~~~~~~iIayep~w 147 (225)
T 1hg3_A 115 EVGL-MTMVCSNN---------------------------------------------PAV-SAAVAALNPDYVAVEPPE 147 (225)
T ss_dssp HHTC-EEEEEESS---------------------------------------------HHH-HHHHHTTCCSEEEECCTT
T ss_pred HCCC-EEEEEeCC---------------------------------------------HHH-HHHHhcCCCCEEEEeChh
Confidence 5664 35555530 111 144556677777799999
Q ss_pred CCCCC---CCCCHHHHH---H-HHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHH
Q 045794 502 CDGQG---KGFDMDLIK---L-ISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKE 567 (578)
Q Consensus 502 ~dG~~---~G~d~~li~---~-l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~ 567 (578)
.-||. +-+..+.++ + +++.. +++++++|||.+.+|+..+.+ .|+||++||+++...+-...-+++
T Consensus 148 aiGtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~-~~vDG~LVG~a~l~a~~~~~~i~~ 220 (225)
T 1hg3_A 148 LIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIE-LGTVGVLLASGVTKAKDPEKAIWD 220 (225)
T ss_dssp TTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH-TTCSEEEESHHHHTCSSHHHHHHH
T ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHh-CCCCEEEeCHHHHCCcCHHHHHHH
Confidence 99887 444433222 2 22222 589999999999999999875 899999999999976543333333
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00013 Score=75.96 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCcEEEEecc--C--------CCC------CCCCC-CHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHH
Q 045794 481 YELAKAVEDLGAGEILLNCI--D--------CDG------QGKGF-DMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi--~--------~dG------~~~G~-d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~ 542 (578)
.+.++.+.+.|++.|++..- + +.. ...|+ .++.++++++.+ ++|||++|||.+.+|+.+++.
T Consensus 192 ~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~ 271 (349)
T 1p0k_A 192 KASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIA 271 (349)
T ss_dssp HHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHH
Confidence 57789999999999998531 1 110 12343 678888888876 899999999999999999986
Q ss_pred hcCchHHhhhhhhccC
Q 045794 543 KTNASAALAAGIFHRK 558 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~~ 558 (578)
.||++|++|+++...
T Consensus 272 -~GAd~V~iG~~~l~~ 286 (349)
T 1p0k_A 272 -LGASCTGMAGHFLKA 286 (349)
T ss_dssp -TTCSEEEECHHHHHH
T ss_pred -cCCCEEEEcHHHHHH
Confidence 899999999988754
|
| >3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00043 Score=64.30 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=56.2
Q ss_pred cEEEEEECCC--C-CHHHHHHHHHHCCCeEEEeCCc-------------------cCC----CCCCEEEECCC--C-Cch
Q 045794 48 SVVTLLDYGA--G-NVRSVRNAIRHLGFGIKDVQTP-------------------EDI----LNANRLIFPGV--G-AFA 98 (578)
Q Consensus 48 ~~I~vld~~~--g-~~~~i~~~L~~~Gv~v~~v~~~-------------------~dl----~~~DGlILpGG--g-~~~ 98 (578)
++|+|+=++. + ...+..+.+.+.|+++.++... .++ .++|.||+||| . ...
T Consensus 3 ~~v~ill~~~~~g~~~~~~~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~~~ 82 (175)
T 3cne_A 3 KKVAVLAVNPVNGCGLFQYLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQ 82 (175)
T ss_dssp CEEEEEECSSBCHHHHHHHHHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGGGG
T ss_pred cEEEEEEecCcCCCccchhhheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcccHH
Confidence 3577776541 1 0123344444788888776432 123 56899999998 3 221
Q ss_pred HHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 99 AAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 99 ~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
...+......+.++++++.+.++||.+||.|.++|+.
T Consensus 83 ~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~ 119 (175)
T 3cne_A 83 QYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDF 119 (175)
T ss_dssp GCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHH
T ss_pred HHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHH
Confidence 1110001225778999999999999999999999998
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00017 Score=69.23 Aligned_cols=79 Identities=22% Similarity=0.231 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+|.+.++.+.+.|++.|++ +. +..+.... ...++.++++++.+ ++|+.++|||+ .++ ++++++
T Consensus 114 ~t~~~~~~~~~~~g~d~i~v-~~-g~~g~~~~-~~~~~~i~~l~~~~~~~~i~~~gGI~-~~~-----------~~~~~~ 178 (211)
T 3f4w_A 114 DDLPARVRLLEEAGADMLAV-HT-GTDQQAAG-RKPIDDLITMLKVRRKARIAVAGGIS-SQT-----------VKDYAL 178 (211)
T ss_dssp SSHHHHHHHHHHHTCCEEEE-EC-CHHHHHTT-CCSHHHHHHHHHHCSSCEEEEESSCC-TTT-----------HHHHHT
T ss_pred CCHHHHHHHHHHcCCCEEEE-cC-CCcccccC-CCCHHHHHHHHHHcCCCcEEEECCCC-HHH-----------HHHHHH
Confidence 36889999999999998765 32 11000000 12478888888876 89999999997 766 999999
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
+|||.|++||+.++.
T Consensus 179 ~Gad~vvvGsai~~~ 193 (211)
T 3f4w_A 179 LGPDVVIVGSAITHA 193 (211)
T ss_dssp TCCSEEEECHHHHTC
T ss_pred cCCCEEEECHHHcCC
Confidence 999999999988864
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00041 Score=67.96 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=59.0
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcce
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~ 390 (578)
+.|+...+.|++.|- +.+.+..........++++++++.+. ++|+...|||++.+| +++++++||+-
T Consensus 140 eea~~a~~~Gad~Ig-~~~~g~t~~~~~~~~~~~~i~~l~~~-~ipvIA~GGI~t~~d-----------~~~~~~~Gadg 206 (232)
T 3igs_A 140 DDGLACQRLGADIIG-TTMSGYTTPDTPEEPDLPLVKALHDA-GCRVIAEGRYNSPAL-----------AAEAIRYGAWA 206 (232)
T ss_dssp HHHHHHHHTTCSEEE-CTTTTSSSSSCCSSCCHHHHHHHHHT-TCCEEEESCCCSHHH-----------HHHHHHTTCSE
T ss_pred HHHHHHHhCCCCEEE-EcCccCCCCCCCCCCCHHHHHHHHhc-CCcEEEECCCCCHHH-----------HHHHHHcCCCE
Confidence 667888899999774 33332211111235678999999987 999999999999877 99999999999
Q ss_pred eecchhhhc
Q 045794 391 ISIGSDAVY 399 (578)
Q Consensus 391 vv~gt~~~~ 399 (578)
|++||+..+
T Consensus 207 V~VGsal~~ 215 (232)
T 3igs_A 207 VTVGSAITR 215 (232)
T ss_dssp EEECHHHHC
T ss_pred EEEehHhcC
Confidence 999988775
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00049 Score=67.05 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCC-CCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQG-KGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASA 548 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~-~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~g 548 (578)
...+.++.+++.|++.| -|+. |.. .|.+++.++.+++.+ ++||+++|||++.+|+.++++ +||+.
T Consensus 133 ~~~~~a~~a~eaGad~I-~tst---g~~~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~-aGA~~ 200 (225)
T 1mzh_A 133 EIKKAVEICIEAGADFI-KTST---GFAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIE-AGADR 200 (225)
T ss_dssp HHHHHHHHHHHHTCSEE-ECCC---SCSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHH-TTCSE
T ss_pred HHHHHHHHHHHhCCCEE-EECC---CCCCCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHH-hCchH
Confidence 36789999999999988 3332 443 467999999998876 799999999999999999996 89993
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.41 E-value=7.9e-05 Score=79.34 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHH-cCCCeEEEEeccc----CCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHH
Q 045794 307 GKPVELARQYYK-EGADEISFLNITG----FRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEV 379 (578)
Q Consensus 307 ~~p~~~a~~~~~-~g~~~i~~~Dl~~----~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~ 379 (578)
.+.+++|+.+.+ .|++.||+..-+. ......+...+.+.++.+++.+ .+||++.|||++.++
T Consensus 264 ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~----------- 332 (419)
T 3l5a_A 264 DEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIASGGINSPES----------- 332 (419)
T ss_dssp HHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEECSSCCSHHH-----------
T ss_pred HHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCCCeEEEECCCCCHHH-----------
Confidence 578999999999 9999999987543 1110111122345677777766 599999999999866
Q ss_pred HHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccc
Q 045794 380 ASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRR 436 (578)
Q Consensus 380 ~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~ 436 (578)
++++++. ||.|.+|..++.| |++++++.+-.. +.|..+||+..
T Consensus 333 Ae~~L~~-aDlVaiGR~~Ian------------Pdlv~ki~~G~~-~~I~~ci~~~~ 375 (419)
T 3l5a_A 333 ALDALQH-ADMVGMSSPFVTE------------PDFVHKLAEQRP-HDINLEFSMAD 375 (419)
T ss_dssp HHHHGGG-CSEEEESTHHHHC------------TTHHHHHHTTCG-GGCCCCCCGGG
T ss_pred HHHHHHh-CCcHHHHHHHHHC------------cHHHHHHHcCCc-ccceecCCHHH
Confidence 9999999 9999999999985 477889887664 67888998765
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=7.8e-05 Score=75.71 Aligned_cols=83 Identities=18% Similarity=0.310 Sum_probs=55.5
Q ss_pred hhHHHHHHHhhhccccEE--EeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhcc-ch-hhhhc-----cccC
Q 045794 341 PMLQVLRLTSENVFVPLT--VGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYA-AE-DYLKT-----GVKT 411 (578)
Q Consensus 341 ~~~~~i~~i~~~~~~pi~--~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~-~~-~~~~~-----~~~~ 411 (578)
.+++.++++++.+++|+. +.|||++.+| +++++++||+.|++||+.+.. ++ ...+. ..-.
T Consensus 194 ~~~~~i~~l~~~~~~pvi~~a~GGI~~~e~-----------i~~~~~aGadgvvvGsai~~~~dp~~~~~~l~~~i~~~~ 262 (297)
T 2zbt_A 194 APFELVKWVHDHGRLPVVNFAAGGIATPAD-----------AALMMHLGMDGVFVGSGIFKSGDPRKRARAIVRAVAHYN 262 (297)
T ss_dssp CCHHHHHHHHHHSSCSSCEEBCSSCCSHHH-----------HHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHhcCCCcEEEeeCCCCCHHH-----------HHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHHHh
Confidence 347888999888889987 9999999866 999999999999999998852 11 11100 0013
Q ss_pred CchHHHHHHHhCCCCeEEEEEeccc
Q 045794 412 GKSSLEQISRVYGNQAVVVSIDPRR 436 (578)
Q Consensus 412 ~~~~l~~~~~~~g~~~iv~slD~~~ 436 (578)
+++.+..+++.+|.. ++++|++.
T Consensus 263 ~~~~~~~~~~~~g~~--~~~~~~~~ 285 (297)
T 2zbt_A 263 DPEVLAEVSEDLGEP--MVGINLDQ 285 (297)
T ss_dssp CHHHHHHHHTTCCCC--C-------
T ss_pred chHhhhHHHHhcCce--eEEeechh
Confidence 456677788888854 89999876
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0004 Score=67.15 Aligned_cols=80 Identities=14% Similarity=-0.040 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCC--CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLG--DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~--~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
+|.+ ++.+.+.|++.|.+............ ...+++.++++++.+++||.+.|||++.+| ++++++
T Consensus 128 t~~e-~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~-----------~~~~~~ 195 (223)
T 1y0e_A 128 TVEE-AKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDM-----------YKRVMD 195 (223)
T ss_dssp SHHH-HHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHH-----------HHHHHH
T ss_pred CHHH-HHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCCCCHHH-----------HHHHHH
Confidence 4555 56678899998764332111111111 367888999999988999999999999876 999999
Q ss_pred cCcceeecchhhhc
Q 045794 386 SGADKISIGSDAVY 399 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~ 399 (578)
+||+.|++|++.++
T Consensus 196 ~Gad~v~vG~al~~ 209 (223)
T 1y0e_A 196 LGVHCSVVGGAITR 209 (223)
T ss_dssp TTCSEEEECHHHHC
T ss_pred cCCCEEEEChHHcC
Confidence 99999999998665
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00067 Score=66.62 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.| ..+|+++.+.|++-+ ..+..--+.. ..-.|.++|+.+.+..++||.++|||.+.+| +...+++
T Consensus 144 dd-~~~akrl~~~G~~aV--mPlg~pIGsG-~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsD-----------Aa~AmeL 208 (265)
T 1wv2_A 144 DD-PIIARQLAEIGCIAV--MPLAGLIGSG-LGICNPYNLRIILEEAKVPVLVDAGVGTASD-----------AAIAMEL 208 (265)
T ss_dssp SC-HHHHHHHHHSCCSEE--EECSSSTTCC-CCCSCHHHHHHHHHHCSSCBEEESCCCSHHH-----------HHHHHHH
T ss_pred CC-HHHHHHHHHhCCCEE--EeCCccCCCC-CCcCCHHHHHHHHhcCCCCEEEeCCCCCHHH-----------HHHHHHc
Confidence 45 478999999999977 4444321211 1124689999999988999999999999987 9999999
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
||+.|.+||+...
T Consensus 209 GAdgVlVgSAI~~ 221 (265)
T 1wv2_A 209 GCEAVLMNTAIAH 221 (265)
T ss_dssp TCSEEEESHHHHT
T ss_pred CCCEEEEChHHhC
Confidence 9999999998765
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00023 Score=69.43 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=57.8
Q ss_pred HHHHHHcCCCeE--EEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcce
Q 045794 313 ARQYYKEGADEI--SFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390 (578)
Q Consensus 313 a~~~~~~g~~~i--~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~ 390 (578)
++.+.+.|+|.| ++........ ...+.+++.++++.+. ++||++.|||++.+| +++++++||+.
T Consensus 146 a~~a~~~Gad~i~~~v~g~~~~~~--~~~~~~~~~i~~~~~~-~ipvia~GGI~s~~~-----------~~~~~~~Gad~ 211 (234)
T 1yxy_A 146 GLVAHQAGIDFVGTTLSGYTPYSR--QEAGPDVALIEALCKA-GIAVIAEGKIHSPEE-----------AKKINDLGVAG 211 (234)
T ss_dssp HHHHHHTTCSEEECTTTTSSTTSC--CSSSCCHHHHHHHHHT-TCCEEEESCCCSHHH-----------HHHHHTTCCSE
T ss_pred HHHHHHcCCCEEeeeccccCCCCc--CCCCCCHHHHHHHHhC-CCCEEEECCCCCHHH-----------HHHHHHCCCCE
Confidence 777888999988 4444432111 1135678999999987 899999999999876 99999999999
Q ss_pred eecchhhhc
Q 045794 391 ISIGSDAVY 399 (578)
Q Consensus 391 vv~gt~~~~ 399 (578)
|++||+.+.
T Consensus 212 v~vGsal~~ 220 (234)
T 1yxy_A 212 IVVGGAITR 220 (234)
T ss_dssp EEECHHHHC
T ss_pred EEEchHHhC
Confidence 999998776
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0005 Score=67.19 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
.+.|+...+.|++.|- +.+.+.........+++++++++.+. ++|+...|||++.+| +++++++||+
T Consensus 139 ~eea~~a~~~Gad~Ig-~~~~g~t~~~~~~~~~~~li~~l~~~-~ipvIA~GGI~t~~d-----------~~~~~~~Gad 205 (229)
T 3q58_A 139 VNEGISCHQKGIEFIG-TTLSGYTGPITPVEPDLAMVTQLSHA-GCRVIAEGRYNTPAL-----------AANAIEHGAW 205 (229)
T ss_dssp HHHHHHHHHTTCSEEE-CTTTTSSSSCCCSSCCHHHHHHHHTT-TCCEEEESSCCSHHH-----------HHHHHHTTCS
T ss_pred HHHHHHHHhCCCCEEE-ecCccCCCCCcCCCCCHHHHHHHHHc-CCCEEEECCCCCHHH-----------HHHHHHcCCC
Confidence 3667888899999774 33333211111235678999999987 999999999999877 9999999999
Q ss_pred eeecchhhhc
Q 045794 390 KISIGSDAVY 399 (578)
Q Consensus 390 ~vv~gt~~~~ 399 (578)
-|++||+..+
T Consensus 206 gV~VGsai~~ 215 (229)
T 3q58_A 206 AVTVGSAITR 215 (229)
T ss_dssp EEEECHHHHC
T ss_pred EEEEchHhcC
Confidence 9999987775
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00025 Score=70.87 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.|.+.++.+.+.+-..|+++.+.+..+.... .....+.++++++.+++|+.+|+||++.++ +++.+..
T Consensus 159 t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~-----------~~~~~~~ 227 (267)
T 3vnd_A 159 ADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQ-----------VRAAIKA 227 (267)
T ss_dssp CCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHH-----------HHHHHHT
T ss_pred CCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHH-----------HHHHHHc
Confidence 4557777777777677999888765443221 233568899998888999999999999866 9888899
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
|||.||+||+.++
T Consensus 228 gADgvVVGSaiv~ 240 (267)
T 3vnd_A 228 GAAGAISGSAVVK 240 (267)
T ss_dssp TCSEEEECHHHHH
T ss_pred CCCEEEECHHHHH
Confidence 9999999998776
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00072 Score=70.37 Aligned_cols=62 Identities=10% Similarity=-0.019 Sum_probs=48.8
Q ss_pred HHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh-ccCCCCHHHHHH----HHHhCCC
Q 045794 512 DLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF-HRKEVPIQSVKE----HLYKEGI 574 (578)
Q Consensus 512 ~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~-~~~~~~~~~~~~----~l~~~~i 574 (578)
+.++++.+.+ ++|||+.|||.|.+|+.+.+. +||++|+|+|++ +.|+..+.++++ +|.+.|+
T Consensus 266 ~~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~-aGAs~Vqv~Ta~~y~GP~~~~~I~~~L~~~L~~~G~ 333 (354)
T 3tjx_A 266 ANINAFYRRCPGKLIFGCGGVYTGEDAFLHVL-AGASMVQVGTALQEEGPSIFERLTSELLGVMAKKRY 333 (354)
T ss_dssp HHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH-HTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCcEEEeCCcCCHHHHHHHHH-cCCCEEEEChhhhhcCchHHHHHHHHHHHHHHHcCC
Confidence 3455665554 789999999999999999996 999999999986 578887766555 5556565
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00068 Score=70.69 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCC-----------------CCC-CHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHH
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQG-----------------KGF-DMDLIKLISDAV-SIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~-----------------~G~-d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~ 541 (578)
.+.++.+.+.|++.|.+... -|+. .|+ ..+.+..+.... ++|||++|||++..|+.+++
T Consensus 220 ~e~A~~l~~aGad~I~V~g~--GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvia~GGI~~g~Dv~KaL 297 (365)
T 3sr7_A 220 VKTIQTAIDLGVKTVDISGR--GGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILASGGIRHPLDIIKAL 297 (365)
T ss_dssp HHHHHHHHHHTCCEEECCCB--C--------------CGGGTTCSCBHHHHHHHHGGGTTTSEEEECSSCCSHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCC--CCcccchhhccccccccccccccccHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHH
Confidence 47789999999999997653 2221 122 335666654432 79999999999999999999
Q ss_pred HhcCchHHhhhhhhcc
Q 045794 542 RKTNASAALAAGIFHR 557 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~ 557 (578)
. +||++|++|+++..
T Consensus 298 a-lGAdaV~ig~~~l~ 312 (365)
T 3sr7_A 298 V-LGAKAVGLSRTMLE 312 (365)
T ss_dssp H-HTCSEEEESHHHHH
T ss_pred H-cCCCEEEECHHHHH
Confidence 6 99999999998863
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00058 Score=71.40 Aligned_cols=86 Identities=22% Similarity=0.158 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCC------------CCCCC---CchhHHHHHHHhhhc--cccEEEeCCccccccCC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFR------------DFPLG---DLPMLQVLRLTSENV--FVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~------------~~~~~---~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~ 370 (578)
+..++|+.+.+.|++.|++.+-...+ ++..+ ....++.|+++.+.+ .+||...|||++.+|
T Consensus 235 ~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~d-- 312 (367)
T 3zwt_A 235 DKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQD-- 312 (367)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHH--
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHH--
Confidence 67889999999999999987543211 00000 112468899999998 899999999999977
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhccchhh
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDY 404 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~ 404 (578)
+.+++.+||+.|.+||..+.+.|.+
T Consensus 313 ---------a~~~l~~GAd~V~vgra~l~~gP~~ 337 (367)
T 3zwt_A 313 ---------ALEKIRAGASLVQLYTALTFWGPPV 337 (367)
T ss_dssp ---------HHHHHHHTCSEEEESHHHHHHCTHH
T ss_pred ---------HHHHHHcCCCEEEECHHHHhcCcHH
Confidence 9999999999999999997543433
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00028 Score=72.01 Aligned_cols=81 Identities=19% Similarity=0.068 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEec-------ccCCC-----------CCCC---CchhHHHHHHHhhhc--cccEEEeCCcc
Q 045794 308 KPVELARQYYKEGADEISFLNI-------TGFRD-----------FPLG---DLPMLQVLRLTSENV--FVPLTVGGGIR 364 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl-------~~~~~-----------~~~~---~~~~~~~i~~i~~~~--~~pi~~gGGir 364 (578)
+..++|+.+.+.|++.|.+.+- +.... +..+ ....++.++++++.+ ++||...|||+
T Consensus 173 ~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~ 252 (311)
T 1jub_A 173 HFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIE 252 (311)
T ss_dssp HHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCC
T ss_pred HHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCC
Confidence 4557799999999999988553 21000 0001 123478899999988 89999999999
Q ss_pred ccccCCCCccChHHHHHHHHHcCcceeecchhhhc
Q 045794 365 DFTDANGRHYSSLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 365 ~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
+.+| +.+++.+|||.|.+||..+.
T Consensus 253 ~~~d-----------a~~~l~~GAd~V~vg~~~l~ 276 (311)
T 1jub_A 253 TGQD-----------AFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp SHHH-----------HHHHHHHTCSEEEECHHHHH
T ss_pred CHHH-----------HHHHHHcCCCEEEEchHHHh
Confidence 9977 99999999999999999996
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00096 Score=65.70 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=62.9
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh-hcc-ccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE-NVF-VPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~-~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
..|| ++|+++.+.|++-| ..|.+--++.. .-.|.+.|+.+.+ ..+ +||.++|||.+.+| +...
T Consensus 132 ~~D~-~~ak~l~~~G~~aV--mPlg~pIGsG~-Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsD-----------Aa~A 196 (268)
T 2htm_A 132 GPDL-VLAKRLAALGTATV--MPLAAPIGSGW-GVRTRALLELFAREKASLPPVVVDAGLGLPSH-----------AAEV 196 (268)
T ss_dssp CSCH-HHHHHHHHHTCSCB--EEBSSSTTTCC-CSTTHHHHHHHHHTTTTSSCBEEESCCCSHHH-----------HHHH
T ss_pred CCCH-HHHHHHHhcCCCEE--EecCccCcCCc-ccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHH-----------HHHH
Confidence 3677 89999999999876 67665222211 1236777888888 677 99999999999987 9999
Q ss_pred HHcCcceeecchhhhc
Q 045794 384 FRSGADKISIGSDAVY 399 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~ 399 (578)
+++|||.|.+||+..+
T Consensus 197 meLGAdgVlVgSAI~~ 212 (268)
T 2htm_A 197 MELGLDAVLVNTAIAE 212 (268)
T ss_dssp HHTTCCEEEESHHHHT
T ss_pred HHcCCCEEEEChHHhC
Confidence 9999999999998775
|
| >2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00078 Score=63.40 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=57.9
Q ss_pred EEEEEECC---CCCHHHHHHHHHH-CCCeEEEeCCc------------------cCCC--CCCEEEECCCCCchHHHHHH
Q 045794 49 VVTLLDYG---AGNVRSVRNAIRH-LGFGIKDVQTP------------------EDIL--NANRLIFPGVGAFAAAMDVL 104 (578)
Q Consensus 49 ~I~vld~~---~g~~~~i~~~L~~-~Gv~v~~v~~~------------------~dl~--~~DGlILpGGg~~~~~~~~l 104 (578)
+|+|+=++ ..-.....+.|+. .|+++.++... +++. ++|+||+|||... .. .
T Consensus 3 ~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~--~~--~ 78 (188)
T 2fex_A 3 RIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSW--EK--G 78 (188)
T ss_dssp EEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHH--HH--T
T ss_pred EEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcc--cc--c
Confidence 35555322 2233345677887 88888876431 1222 7999999998521 11 1
Q ss_pred HhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 105 NKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 105 ~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
....+.++|+++.+.++||.+||.|.++|+.+
T Consensus 79 ~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 79 TAADLGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp CCCCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 23357889999999999999999999999983
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00037 Score=69.78 Aligned_cols=81 Identities=20% Similarity=0.194 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+.+.++...+.+...||++-+.+..+.... .....+.++++++.+++|+.+|+||++.++ +++.+..
T Consensus 161 t~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~-----------~~~~~~~ 229 (271)
T 3nav_A 161 ASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQ-----------VKQAIEA 229 (271)
T ss_dssp CCHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHH-----------HHHHHHT
T ss_pred CCHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHH-----------HHHHHHc
Confidence 4457777777777788998777554332211 233457889998888999999999999876 9888999
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
|||.||+||+.++
T Consensus 230 gADgvIVGSAiv~ 242 (271)
T 3nav_A 230 GAAGAISGSAVVK 242 (271)
T ss_dssp TCSEEEESHHHHH
T ss_pred CCCEEEECHHHHH
Confidence 9999999998886
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0019 Score=65.82 Aligned_cols=72 Identities=25% Similarity=0.282 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCcEEEEec-cCCCCCCCCCCHHHHHHHHhh----CCCc-EEEecCCCCHHH----HHHHHHhcCchHH
Q 045794 480 AYELAKAVEDLGAGEILLNC-IDCDGQGKGFDMDLIKLISDA----VSIP-VIASSGAGAVEH----FSDVFRKTNASAA 549 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~td-i~~dG~~~G~d~~li~~l~~~----~~ip-VIasGGi~s~eD----i~~l~~~~G~~gv 549 (578)
+.+.++++.++|++.+=+.. ++ ++ | +++.++++.+. +.+| |+++||+ +.++ ++.+.+ .|++|+
T Consensus 179 v~~aa~~a~~lGaD~iKv~~~~~--~~--g-~~~~~~~vv~~~~~~~~~P~Vv~aGG~-~~~~~~~~~~~a~~-aGa~Gv 251 (304)
T 1to3_A 179 IIDAAKELGDSGADLYKVEMPLY--GK--G-ARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVRVAME-AGASGF 251 (304)
T ss_dssp HHHHHHHHTTSSCSEEEECCGGG--GC--S-CHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHHHHHH-TTCCEE
T ss_pred HHHHHHHHHHcCCCEEEeCCCcC--CC--C-CHHHHHHHHHhccccCCCCeEEEecCC-CHHHHHHHHHHHHH-cCCeEE
Confidence 35668999999999765555 33 22 2 67777777666 8999 9999999 5544 777775 799999
Q ss_pred hhhhhhccC
Q 045794 550 LAAGIFHRK 558 (578)
Q Consensus 550 ~vgsa~~~~ 558 (578)
++|+++.+.
T Consensus 252 ~vGRaI~q~ 260 (304)
T 1to3_A 252 LAGRAVWSS 260 (304)
T ss_dssp EESHHHHGG
T ss_pred EEehHHhCc
Confidence 999999876
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0024 Score=62.02 Aligned_cols=156 Identities=18% Similarity=0.232 Sum_probs=95.2
Q ss_pred HHHHHhhhccccEEEeCCccccccCC-CCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhC
Q 045794 345 VLRLTSENVFVPLTVGGGIRDFTDAN-GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY 423 (578)
Q Consensus 345 ~i~~i~~~~~~pi~~gGGir~~~d~~-~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 423 (578)
.+..+++.+.+|+ |-.++...+ |-.|-... +..+.++||+.|+||-+..+....-+ ...-+.+.+.
T Consensus 47 ~L~~v~~~~~i~v----~aQdv~~~~~Ga~TGeis-~~~l~~~Ga~~VllghseRR~~~~e~--------~~k~~~A~~~ 113 (226)
T 1w0m_A 47 ELGLVSQSVDIPV----YAQGADVEAGGAHTAHVS-LENIKEAGGSGVILNHSEAPLKLNDL--------ARLVAKAKSL 113 (226)
T ss_dssp GHHHHHTTCSSCB----EESCCSBSSCSSCTTCCB-HHHHHHHTCCEEEECCTTSCCBHHHH--------HHHHHHHHHT
T ss_pred HHHHHHHhcCCce----EeeECChhhCCCccCCCC-HHHHHHcCCCEEEEeeeeccCCHHHH--------HHHHHHHHHC
Confidence 3455555567777 233333221 33332221 56677889999999987733211111 1122334556
Q ss_pred CCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCC
Q 045794 424 GNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCD 503 (578)
Q Consensus 424 g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~d 503 (578)
|= .+++++. +..+ .+.+...+..-|-|..+..-
T Consensus 114 GL-~~ivcVg---------------------------------------------e~~e-~~~~~~~~~~iIayep~wai 146 (226)
T 1w0m_A 114 GL-DVVVCAP---------------------------------------------DPRT-SLAAAALGPHAVAVEPPELI 146 (226)
T ss_dssp TC-EEEEEES---------------------------------------------SHHH-HHHHHHTCCSEEEECCGGGT
T ss_pred CC-EEEEEeC---------------------------------------------CHHH-HHHHhcCCCCEEEEcChhhh
Confidence 64 3555553 0112 14456677777779999999
Q ss_pred CCC---CCCCHHHHHH----HHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCC
Q 045794 504 GQG---KGFDMDLIKL----ISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 504 G~~---~G~d~~li~~----l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~ 561 (578)
||. +-+..+.+++ +++.. +++++++|||.+.+|+..+.+ .|+||++||+++...+-.
T Consensus 147 GtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~-~giDG~LVG~a~l~a~~~ 211 (226)
T 1w0m_A 147 GTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALR-LGTRGVLLASAAVKAKDP 211 (226)
T ss_dssp TTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHHHTCSSH
T ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHh-CCCCEEEECHHHHCCcCH
Confidence 887 3344442222 22222 589999999999999999875 899999999999976643
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00043 Score=75.21 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=39.0
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 511 MDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 511 ~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+..+.++.+..++|||++|||.+..|+.+++. +||++|++|++|+.
T Consensus 317 l~~~~~~~~~~~vpVia~GGi~~~~di~kala-lGA~~v~~g~~~~~ 362 (486)
T 2cu0_A 317 VAMVADRAQEYGLYVIADGGIRYSGDIVKAIA-AGADAVMLGNLLAG 362 (486)
T ss_dssp HHHHHHHHHHHTCEEEEESCCCSHHHHHHHHH-TTCSEEEESTTTTT
T ss_pred HHHHHHHHHHcCCcEEecCCCCCHHHHHHHHH-cCCCceeeChhhhc
Confidence 34455555556899999999999999999996 99999999999874
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00066 Score=67.50 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+.+.++.+.+.+.+.+++.-+-+..+.... ....++.++++++.+++||.+||||++.++ +++++++
T Consensus 154 t~~e~~~~~~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~~~e~-----------~~~~~~~ 222 (262)
T 1rd5_A 154 IPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEH-----------VKQIAQW 222 (262)
T ss_dssp SCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHH-----------HHHHHHT
T ss_pred CCHHHHHHHHhcCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhcCCeEEEECCcCCHHH-----------HHHHHHc
Confidence 5567777777777777777665332221111 234567889998888999999999999865 9999999
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
|||.|++||+.++
T Consensus 223 GAdgvvVGSai~~ 235 (262)
T 1rd5_A 223 GADGVIIGSAMVR 235 (262)
T ss_dssp TCSEEEECHHHHH
T ss_pred CCCEEEEChHHHh
Confidence 9999999998776
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00041 Score=73.33 Aligned_cols=87 Identities=20% Similarity=0.119 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCC----------CCCCC---CchhHHHHHHHhhhc--cccEEEeCCccccccCCCC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFR----------DFPLG---DLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGR 372 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~----------~~~~~---~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~ 372 (578)
+..++|+...+.|+|.|++.+=...+ ++..+ ....+++|+++.+.+ .+||...|||++.+|
T Consensus 284 ~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eD---- 359 (415)
T 3i65_A 284 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLD---- 359 (415)
T ss_dssp HHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHH----
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHH----
Confidence 57899999999999999987632210 11001 123468899999988 799999999999977
Q ss_pred ccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 373 HYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 373 ~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
+.+++.+||+-|.|||..+.+.|.++
T Consensus 360 -------a~e~l~aGAd~VqIgra~l~~GP~~~ 385 (415)
T 3i65_A 360 -------ALEKIEAGASVCQLYSCLVFNGMKSA 385 (415)
T ss_dssp -------HHHHHHHTEEEEEESHHHHHHGGGHH
T ss_pred -------HHHHHHcCCCEEEEcHHHHhcCHHHH
Confidence 99999999999999999987534443
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00053 Score=68.60 Aligned_cols=81 Identities=25% Similarity=0.224 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.|.+.++.+.+.+...++++-+.+..+.... .....+.|+++++.+++||.+||||++.++ +++++.+
T Consensus 158 t~~~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~-----------~~~~~~a 226 (268)
T 1qop_A 158 ADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQ-----------VSAAVRA 226 (268)
T ss_dssp CCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHH-----------HHHHHHT
T ss_pred CCHHHHHHHHhhCCCcEEEEecCCcCCCccCCCchHHHHHHHHHhccCCcEEEECCCCCHHH-----------HHHHHHc
Confidence 4556666666666666777766654332111 123468889998888999999999999865 9998899
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
|||.||+||+.++
T Consensus 227 gAD~vVVGSai~~ 239 (268)
T 1qop_A 227 GAAGAISGSAIVK 239 (268)
T ss_dssp TCSEEEECHHHHH
T ss_pred CCCEEEEChHHhh
Confidence 9999999999876
|
| >3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00052 Score=65.94 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=58.4
Q ss_pred CcEEEEEECC-CC--CHHHHHHHHHHC-------CCeEEEeCCc------------------cCCCCCCEEEECCCCCch
Q 045794 47 DSVVTLLDYG-AG--NVRSVRNAIRHL-------GFGIKDVQTP------------------EDILNANRLIFPGVGAFA 98 (578)
Q Consensus 47 ~~~I~vld~~-~g--~~~~i~~~L~~~-------Gv~v~~v~~~------------------~dl~~~DGlILpGGg~~~ 98 (578)
.++|+|+=++ .. -+....+.|+.+ ++++.++... +++.++|.||+|||..+.
T Consensus 8 ~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~~~~~~~~~D~livpGg~~~~ 87 (209)
T 3er6_A 8 NLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTAQWQSFDFTNILIIGSIGDPL 87 (209)
T ss_dssp CEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSSCGGGCSCCSEEEECCCSCHH
T ss_pred CeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCcCccccCCCCEEEECCCCCch
Confidence 4567887654 22 222345555544 3677766432 234679999999986432
Q ss_pred HHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 99 AAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 99 ~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
... ......+.++|+++.+++++|.+||.|-.+|+.+
T Consensus 88 ~~~-~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 88 ESL-DKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp HHG-GGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred hhh-ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 210 0112357789999999999999999999999984
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0017 Score=62.60 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=50.5
Q ss_pred HHHHHHHcCCcEEEEeccCCCCCCCCC--CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 483 LAKAVEDLGAGEILLNCIDCDGQGKGF--DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 483 ~~~~~~~~G~~~ii~tdi~~dG~~~G~--d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
-.+.+++.|...++++- .......|. ..+.++.+++.. ++|+++-|||+ ++.+.++.+ .|++++++||++...
T Consensus 121 ~~~~l~~~~~~~~vl~~-a~~~~~~G~~g~~~~i~~lr~~~~~~~~i~v~GGI~-~~~~~~~~~-aGad~ivvG~~I~~a 197 (216)
T 1q6o_A 121 QAQQWRDAGIGQVVYHR-SRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFKG-IPIHVFIAGRSIRDA 197 (216)
T ss_dssp HHHHHHHTTCCEEEEEC-CHHHHHTTCCCCHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTT-SCCSEEEESHHHHTS
T ss_pred hHHHHHhcCcHHHHHHH-HHHHHhcCCCCCHHHHHHHHHhcCCCCcEEEECCcC-hhhHHHHHH-cCCCEEEEeehhcCC
Confidence 34555666777766631 111111232 356666666655 67899999997 788888885 899999999999865
Q ss_pred CC
Q 045794 559 EV 560 (578)
Q Consensus 559 ~~ 560 (578)
+-
T Consensus 198 ~d 199 (216)
T 1q6o_A 198 AS 199 (216)
T ss_dssp SC
T ss_pred CC
Confidence 43
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0012 Score=68.16 Aligned_cols=79 Identities=28% Similarity=0.429 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
.+.|+.+.+.|+|.|.+-...+ +++.+...++.+++++.+.+++||.+.|||++.++ +.+++.+||+
T Consensus 120 ~~~a~~~~~~GaD~i~v~g~~~--GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~-----------~~~al~~GAd 186 (332)
T 2z6i_A 120 VALAKRMEKIGADAVIAEGMEA--GGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEG-----------AAAGFMLGAE 186 (332)
T ss_dssp HHHHHHHHHTTCSCEEEECTTS--SEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHH-----------HHHHHHTTCS
T ss_pred HHHHHHHHHcCCCEEEEECCCC--CCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHH-----------HHHHHHcCCC
Confidence 3568888899999888753321 23323356789999999989999999999999866 9999999999
Q ss_pred eeecchhhhccc
Q 045794 390 KISIGSDAVYAA 401 (578)
Q Consensus 390 ~vv~gt~~~~~~ 401 (578)
-|.+||..+.++
T Consensus 187 gV~vGs~~l~~~ 198 (332)
T 2z6i_A 187 AVQVGTRFVVAK 198 (332)
T ss_dssp EEEECHHHHTBT
T ss_pred EEEecHHHhcCc
Confidence 999999999864
|
| >3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0011 Score=63.79 Aligned_cols=82 Identities=12% Similarity=0.141 Sum_probs=56.9
Q ss_pred EEEEECC---CCCHHHHHHHHH--------HCCCeEEEeCCc------------------cCCC--CCCEEEECCCCCch
Q 045794 50 VTLLDYG---AGNVRSVRNAIR--------HLGFGIKDVQTP------------------EDIL--NANRLIFPGVGAFA 98 (578)
Q Consensus 50 I~vld~~---~g~~~~i~~~L~--------~~Gv~v~~v~~~------------------~dl~--~~DGlILpGGg~~~ 98 (578)
|+|+=++ ..-.....+.|+ +.++++.++... +++. .+|.||+|||....
T Consensus 8 v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~~~ 87 (212)
T 3efe_A 8 AFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTTWS 87 (212)
T ss_dssp EEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSCTT
T ss_pred EEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCccc
Confidence 5565433 234445667777 567888776431 1233 79999999985322
Q ss_pred HHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 99 AAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 99 ~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
. .....+.++|+++.+.++||.+||.|-.+|+.
T Consensus 88 ~----~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~ 120 (212)
T 3efe_A 88 E----EIHQPILERIGQALKIGTIVAAICGATDALAN 120 (212)
T ss_dssp S----GGGHHHHHHHHHHHHHTCEEEEETHHHHHHHH
T ss_pred c----ccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHH
Confidence 1 12225678999999999999999999999998
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00027 Score=74.71 Aligned_cols=87 Identities=8% Similarity=-0.023 Sum_probs=63.5
Q ss_pred HHHHHHHH---HHcC--CcEEEEeccCCCCCC-CCC--CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh---cCchH
Q 045794 480 AYELAKAV---EDLG--AGEILLNCIDCDGQG-KGF--DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRK---TNASA 548 (578)
Q Consensus 480 ~~e~~~~~---~~~G--~~~ii~tdi~~dG~~-~G~--d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~---~G~~g 548 (578)
...+++++ ++.| ++.|-++.-...+.. .++ +++.++.+++.+++|||++||+.+.+|..++++. .+||+
T Consensus 263 ~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~~~~~~~~~~~~ir~~~~~PvI~~Ggi~~~~dA~~~i~~~~~g~aDl 342 (407)
T 3tjl_A 263 FSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIWKGVILKAGNYSYDAPEFKTLKEDIADKRTL 342 (407)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEEECTTEETTEECCGGGCCCCSHHHHHHCCSEEEEESCGGGGTTTTHHHHHHHTTSSEE
T ss_pred HHHHHHHHHhHhhcCCceeEEEEEccccCCCCcCCccchhHHHHHHHHHhCCCEEecCCCCCHHHHHHHHHhhccCCCeE
Confidence 46788899 8889 999888742211111 111 2345667777788999999999998876666654 67999
Q ss_pred HhhhhhhccCCCCHHHHH
Q 045794 549 ALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 549 v~vgsa~~~~~~~~~~~~ 566 (578)
|++|+++..++.-+..++
T Consensus 343 Va~GR~~iaNPdL~~ri~ 360 (407)
T 3tjl_A 343 VGFSRYFTSNPNLVWKLR 360 (407)
T ss_dssp EECSHHHHHCTTHHHHHH
T ss_pred EEeChhhhhCchHHHHHH
Confidence 999999999988776665
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00054 Score=70.71 Aligned_cols=82 Identities=23% Similarity=0.264 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCC------------CCCC---CchhHHHHHHHhhhc--cccEEEeCCccccccCC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRD------------FPLG---DLPMLQVLRLTSENV--FVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~------------~~~~---~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~ 370 (578)
+..++|+.+.+.|+|.|++.+-..... +..+ ....++.++++.+.+ ++||...|||++.+|
T Consensus 226 ~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~d-- 303 (336)
T 1f76_A 226 ELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIA-- 303 (336)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHH--
T ss_pred HHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHH--
Confidence 567889999999999998864321000 0001 013468889999888 899999999999977
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+.+++++|||.|.+|+.++.+
T Consensus 304 ---------a~~~l~~GAd~V~igr~~l~~ 324 (336)
T 1f76_A 304 ---------AREKIAAGASLVQIYSGFIFK 324 (336)
T ss_dssp ---------HHHHHHHTCSEEEESHHHHHH
T ss_pred ---------HHHHHHCCCCEEEeeHHHHhc
Confidence 999999999999999999873
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.001 Score=83.12 Aligned_cols=92 Identities=12% Similarity=0.069 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCcEEE---EeccCCCCCCCCCC-----HHHHHHHHhhCCCcEEEecCCCCHHHHHHHH----------
Q 045794 480 AYELAKAVEDLGAGEIL---LNCIDCDGQGKGFD-----MDLIKLISDAVSIPVIASSGAGAVEHFSDVF---------- 541 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii---~tdi~~dG~~~G~d-----~~li~~l~~~~~ipVIasGGi~s~eDi~~l~---------- 541 (578)
....+..+.+.|++.|+ +.....-|...-.| ++++.++++.+++|||++|||++.+|+.+++
T Consensus 705 a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~~ipviaaGGI~~g~~i~aaltg~ws~~~g~ 784 (2060)
T 2uva_G 705 AIQQVINIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAGSGFGGSEDTYPYLTGSWSTKFGY 784 (2060)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEESSCCSHHHHHHHHHTCGGGTTTS
T ss_pred HHHHHHHHHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHhcCcchhhcCC
Confidence 34555667899999999 77766665543222 5789999999999999999999999999998
Q ss_pred -HhcCchHHhhhhhhccCCC--CHHHHHHHHHhC
Q 045794 542 -RKTNASAALAAGIFHRKEV--PIQSVKEHLYKE 572 (578)
Q Consensus 542 -~~~G~~gv~vgsa~~~~~~--~~~~~~~~l~~~ 572 (578)
. +||+||++|+.|.-..- .-+.+|+.+-+.
T Consensus 785 pa-lGAdgV~~GT~f~~t~Ea~~s~~~K~~lv~a 817 (2060)
T 2uva_G 785 PP-MPFDGCMFGSRMMTAKEAHTSKQAKQAIVDA 817 (2060)
T ss_dssp CC-CCCSCEEESGGGGGBTTSCCCHHHHHHHHTS
T ss_pred CC-CCCCEEEEchhhhcCcCCCCCHHHHHHHHhC
Confidence 7 89999999998864332 235677766554
|
| >3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00072 Score=64.84 Aligned_cols=86 Identities=14% Similarity=0.172 Sum_probs=59.4
Q ss_pred cEEEEEECCCC---CHHHHHHHHHHCCCeEEEeCCc-------------------cCC--CCCCEEEECCCCCchHHHHH
Q 045794 48 SVVTLLDYGAG---NVRSVRNAIRHLGFGIKDVQTP-------------------EDI--LNANRLIFPGVGAFAAAMDV 103 (578)
Q Consensus 48 ~~I~vld~~~g---~~~~i~~~L~~~Gv~v~~v~~~-------------------~dl--~~~DGlILpGGg~~~~~~~~ 103 (578)
++|+|+=++-- -+....+.|+..|+++.++... +++ .+||.||+|||......+
T Consensus 10 ~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~l-- 87 (208)
T 3ot1_A 10 KRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAF-- 87 (208)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHHH--
T ss_pred CeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHHH--
Confidence 45777765422 2234567899999998877432 112 369999999974111111
Q ss_pred HHhhcHHHHHHHHHhCCCCEEEEechH-HHHhh
Q 045794 104 LNKTGMAEALCAYIEKDRPFLGICLGL-QLLFQ 135 (578)
Q Consensus 104 l~~~~l~~~i~~~~~~g~PIlGIClG~-QlLa~ 135 (578)
.....+.++++++.+.++||.+||-|- .+|+.
T Consensus 88 ~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~ 120 (208)
T 3ot1_A 88 ADSTALLALIDAFSQQGKLVAAICATPALVFAK 120 (208)
T ss_dssp HTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTT
T ss_pred hhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHH
Confidence 122357889999999999999999998 89998
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00082 Score=69.16 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
.+.|+.+.+.|+|.|.+-.... +++.+...++++++++.+.+++||++.|||++.+| +.+++.+||+
T Consensus 134 ~~~a~~a~~~GaD~i~v~g~~~--GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~d-----------v~~al~~GA~ 200 (326)
T 3bo9_A 134 DSLARMVERAGADAVIAEGMES--GGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRG-----------MAAAFALGAE 200 (326)
T ss_dssp HHHHHHHHHTTCSCEEEECTTS--SEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHH-----------HHHHHHHTCS
T ss_pred HHHHHHHHHcCCCEEEEECCCC--CccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHH-----------HHHHHHhCCC
Confidence 3567788889999887765432 23323346889999999888999999999999876 9999999999
Q ss_pred eeecchhhhccc
Q 045794 390 KISIGSDAVYAA 401 (578)
Q Consensus 390 ~vv~gt~~~~~~ 401 (578)
-|.+||..+..+
T Consensus 201 gV~vGs~~~~~~ 212 (326)
T 3bo9_A 201 AVQMGTRFVASV 212 (326)
T ss_dssp EEEESHHHHTBS
T ss_pred EEEechHHHcCc
Confidence 999999988753
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.002 Score=67.73 Aligned_cols=142 Identities=13% Similarity=0.158 Sum_probs=106.1
Q ss_pred HHHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|.+.+=+ |. + ..+ ..+.++.+.+.+| + +.+.+|+..
T Consensus 152 ~~~a~~~~~~Gf~~iKik~g~----~-~~~-------~~e~v~avr~a~g-d-~~l~vD~n~------------------ 199 (384)
T 2pgw_A 152 ARDAAVGHAQGERVFYLKVGR----G-EKL-------DLEITAAVRGEIG-D-ARLRLDANE------------------ 199 (384)
T ss_dssp HHHHHHHHHTTCCEEEEECCS----C-HHH-------HHHHHHHHHTTST-T-CEEEEECTT------------------
T ss_pred HHHHHHHHHcCCCEEEECcCC----C-HHH-------HHHHHHHHHHHcC-C-cEEEEecCC------------------
Confidence 35678888889876554 42 1 111 1377888888898 4 567788643
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
||.. -+..++++.++++|+..|= .-+...|++.++++++.+++||++.+.+.++
T Consensus 200 ----------------~~~~---~~a~~~~~~l~~~~i~~iE-------qP~~~~~~~~~~~l~~~~~iPI~~de~i~~~ 253 (384)
T 2pgw_A 200 ----------------GWSV---HDAINMCRKLEKYDIEFIE-------QPTVSWSIPAMAHVREKVGIPIVADQAAFTL 253 (384)
T ss_dssp ----------------CCCH---HHHHHHHHHHGGGCCSEEE-------CCSCTTCHHHHHHHHHHCSSCEEESTTCCSH
T ss_pred ----------------CCCH---HHHHHHHHHHHhcCCCEEe-------CCCChhhHHHHHHHHhhCCCCEEEeCCcCCH
Confidence 2321 1357889999999987542 2234569999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
++++++++...++.+.+.-.-..|.....++.+.+++.|+++
T Consensus 254 ~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~ 295 (384)
T 2pgw_A 254 YDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKI 295 (384)
T ss_dssp HHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHcCCCCEEEEcchhhCCHHHHHHHHHHHHHCCCeE
Confidence 999999986679988877776677666778888999999876
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0025 Score=60.83 Aligned_cols=79 Identities=28% Similarity=0.278 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHcCCCeEEEEec-cc-CCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNI-TG-FRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl-~~-~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+|.+ ++.+.+.|++.+.+--+ .. ...+ ....+++.++++.+.+.+|+.++|||+ .++ +++++
T Consensus 116 ~t~~e-~~~~~~~g~d~i~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~~~pvia~GGI~-~~n-----------v~~~~ 180 (215)
T 1xi3_A 116 YSLEE-ALEAEKKGADYLGAGSVFPTKTKED--ARVIGLEGLRKIVESVKIPVVAIGGIN-KDN-----------AREVL 180 (215)
T ss_dssp SSHHH-HHHHHHHTCSEEEEECSSCC----C--CCCCHHHHHHHHHHHCSSCEEEESSCC-TTT-----------HHHHH
T ss_pred CCHHH-HHHHHhcCCCEEEEcCCccCCCCCC--CCCcCHHHHHHHHHhCCCCEEEECCcC-HHH-----------HHHHH
Confidence 36666 44566789997765211 11 1111 234568889999888899999999999 776 99999
Q ss_pred HcCcceeecchhhhcc
Q 045794 385 RSGADKISIGSDAVYA 400 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~ 400 (578)
++|++.|++||..+..
T Consensus 181 ~~Ga~gv~vgs~i~~~ 196 (215)
T 1xi3_A 181 KTGVDGIAVISAVMGA 196 (215)
T ss_dssp TTTCSEEEESHHHHTS
T ss_pred HcCCCEEEEhHHHhCC
Confidence 9999999999988864
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0015 Score=65.14 Aligned_cols=78 Identities=22% Similarity=0.168 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.++ +.++...+.|++.| +-+.+..+.. ....+.+.++++.+.+++||.++|||++.+| +++++++
T Consensus 135 ~~~-~~a~~~~~~gad~v--~~~~~~~Gt~-~~~~~~~~l~~i~~~~~iPviv~gGI~t~ed-----------a~~~~~~ 199 (264)
T 1xm3_A 135 DDV-VLARKLEELGVHAI--MPGASPIGSG-QGILNPLNLSFIIEQAKVPVIVDAGIGSPKD-----------AAYAMEL 199 (264)
T ss_dssp SCH-HHHHHHHHHTCSCB--EECSSSTTCC-CCCSCHHHHHHHHHHCSSCBEEESCCCSHHH-----------HHHHHHT
T ss_pred CCH-HHHHHHHHhCCCEE--EECCcccCCC-CCCCCHHHHHHHHhcCCCCEEEEeCCCCHHH-----------HHHHHHc
Confidence 355 56788888999977 2222211111 1122366788888878999999999999876 9999999
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
|||.|++||+.++
T Consensus 200 GAdgViVGSAi~~ 212 (264)
T 1xm3_A 200 GADGVLLNTAVSG 212 (264)
T ss_dssp TCSEEEESHHHHT
T ss_pred CCCEEEEcHHHhC
Confidence 9999999998775
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0018 Score=67.29 Aligned_cols=160 Identities=13% Similarity=0.061 Sum_probs=112.0
Q ss_pred cccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEE
Q 045794 354 FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVS 431 (578)
Q Consensus 354 ~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~s 431 (578)
.+|+..-+|..+.++ -.+.++++.+.|.+.+=+ |...++ + ..+.++.+.+.+|++ +.+.
T Consensus 133 ~vp~~~~~g~~~~~~-------~~~~a~~~~~~Gf~~iKik~g~~~~~----~-------~~e~v~avr~a~g~~-~~l~ 193 (359)
T 1mdl_A 133 PVQAYDSHSLDGVKL-------ATERAVTAAELGFRAVKTRIGYPALD----Q-------DLAVVRSIRQAVGDD-FGIM 193 (359)
T ss_dssp CEEEEEECCSCHHHH-------HHHHHHHHHHTTCSEEEEECCCSSHH----H-------HHHHHHHHHHHHCSS-SEEE
T ss_pred CeeeeeecCCCCHHH-------HHHHHHHHHHcCCCEEEEecCCCCHH----H-------HHHHHHHHHHHhCCC-CEEE
Confidence 356654355555543 135677888889876554 321111 1 137788888889865 5667
Q ss_pred EeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCH
Q 045794 432 IDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDM 511 (578)
Q Consensus 432 lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~ 511 (578)
+|+.. ||.. -+..++++.++++|+..| +.-..-.|+
T Consensus 194 vDan~----------------------------------~~~~---~~a~~~~~~l~~~~i~~i-------E~P~~~~~~ 229 (359)
T 1mdl_A 194 VDYNQ----------------------------------SLDV---PAAIKRSQALQQEGVTWI-------EEPTLQHDY 229 (359)
T ss_dssp EECTT----------------------------------CSCH---HHHHHHHHHHHHHTCSCE-------ECCSCTTCH
T ss_pred EECCC----------------------------------CCCH---HHHHHHHHHHHHhCCCeE-------ECCCChhhH
Confidence 88643 2321 135788999999998754 222233489
Q ss_pred HHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 512 DLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 512 ~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+.++++++.+++||++.+.+.++++++++++...++.+.+--.-..|.....++.+..++.|+++
T Consensus 230 ~~~~~l~~~~~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~g~~~ 294 (359)
T 1mdl_A 230 EGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPM 294 (359)
T ss_dssp HHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeecchhhCCHHHHHHHHHHHHHcCCeE
Confidence 99999999999999999999999999999986678988876655556555678888889999876
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0021 Score=61.63 Aligned_cols=81 Identities=20% Similarity=0.139 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.++.++++.+...|+..+++.+++.. +. ..+.+.+.|+++++...+|+.+.||+.+.+| +.++++.
T Consensus 130 ~~~~~~i~~~~~~~~~~vli~~~~~~--g~-~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~-----------~~~~~~~ 195 (237)
T 3cwo_X 130 ILLRDWVVEVEKRGAGEILLTSIDRD--GT-KSGYDTEMIRFVRPLTTLPIIASGGAGKMEH-----------FLEAFLA 195 (237)
T ss_dssp EEHHHHHHHHHHHTCSEEEEEETTTT--TC-CSCCCHHHHHHHGGGCCSCEEEESCCCSHHH-----------HHHHHHH
T ss_pred cCHHHHHHHHhhcCCCeEEEEecCCC--Cc-cccccHHHHHHHHHhcCCCEEecCCCCCHHH-----------HHHHHHc
Confidence 47889999999999999999997432 21 2244588999999988999999999999876 8899999
Q ss_pred Ccceeecchhhhccc
Q 045794 387 GADKISIGSDAVYAA 401 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~ 401 (578)
|++.+++|++....+
T Consensus 196 G~~~~~vg~a~~~~~ 210 (237)
T 3cwo_X 196 GADAALAASVFHFRE 210 (237)
T ss_dssp TCSEEEESHHHHTTS
T ss_pred CcHHHhhhHHHHcCC
Confidence 999999999987753
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0018 Score=62.84 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC--CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF--DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~--d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
.+.++.+.+.+++.++++ ...++...|. ..+.++.+++.+ +.++.+.||| ++++++.+.+ .|++.+++||++.
T Consensus 124 ~~~~~~~~~~~~~~~v~~-~a~~~~~~Gvv~s~~e~~~ir~~~~~~~~i~v~gGI-~~~~~~~~~~-aGad~~VvG~~I~ 200 (221)
T 3exr_A 124 YDQAQQWLDAGISQAIYH-QSRDALLAGETWGEKDLNKVKKLIEMGFRVSVTGGL-SVDTLKLFEG-VDVFTFIAGRGIT 200 (221)
T ss_dssp HHHHHHHHHTTCCEEEEE-CCHHHHHHTCCCCHHHHHHHHHHHHHTCEEEEESSC-CGGGGGGGTT-CCCSEEEECHHHH
T ss_pred HHHHHHHHcCCHHHHHHH-HHHhcCCCccccCHHHHHHHHHhhcCCceEEEECCC-CHHHHHHHHH-CCCCEEEECchhh
Confidence 445567778899888875 2222222332 233444554433 5789999999 6788888874 8999999999998
Q ss_pred cCCCC
Q 045794 557 RKEVP 561 (578)
Q Consensus 557 ~~~~~ 561 (578)
..+-+
T Consensus 201 ~a~dp 205 (221)
T 3exr_A 201 EAKNP 205 (221)
T ss_dssp TSSSH
T ss_pred CCCCH
Confidence 66543
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.003 Score=62.60 Aligned_cols=99 Identities=19% Similarity=0.097 Sum_probs=76.6
Q ss_pred cccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHH
Q 045794 470 NGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAA 549 (578)
Q Consensus 470 ~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv 549 (578)
+||... .++.++++.+++.|+..|-+.+ -++..+| ..+.++.+++.+++||+..++|.+..++..+.. .|||+|
T Consensus 59 kg~i~~--~~p~~~A~~~~~~GA~~isvlt--~~~~f~G-~~~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~-~GAD~V 132 (254)
T 1vc4_A 59 EGLIRE--VDPVEAALAYARGGARAVSVLT--EPHRFGG-SLLDLKRVREAVDLPLLRKDFVVDPFMLEEARA-FGASAA 132 (254)
T ss_dssp TCCCCS--CCHHHHHHHHHHTTCSEEEEEC--CCSSSCC-CHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHH-TTCSEE
T ss_pred CCcCCC--CCHHHHHHHHHHcCCCEEEEec--chhhhcc-CHHHHHHHHHhcCCCEEECCcCCCHHHHHHHHH-cCCCEE
Confidence 466654 6899999999999999987633 3344444 567788888899999999999999999999875 999999
Q ss_pred hhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 550 LAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 550 ~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+++.+... -.+.++.+..++-|+.+
T Consensus 133 lL~~~~l~--~~l~~l~~~a~~lGl~~ 157 (254)
T 1vc4_A 133 LLIVALLG--ELTGAYLEEARRLGLEA 157 (254)
T ss_dssp EEEHHHHG--GGHHHHHHHHHHHTCEE
T ss_pred EECccchH--HHHHHHHHHHHHCCCeE
Confidence 99888766 34666655555667664
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0017 Score=68.04 Aligned_cols=140 Identities=12% Similarity=0.081 Sum_probs=102.2
Q ss_pred HHHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|.+.+=+ |.. .+ + ..+.++.+.+.+|++ +.+.+|+..
T Consensus 150 ~~~a~~~~~~Gf~~iKik~g~~-~~----~-------~~e~v~avr~a~g~d-~~l~vDan~------------------ 198 (379)
T 2rdx_A 150 RAELARHRAAGYRQFQIKVGAD-WQ----S-------DIDRIRACLPLLEPG-EKAMADANQ------------------ 198 (379)
T ss_dssp HHHHHHHHHTTCCEEEEECCSC-HH----H-------HHHHHHHHGGGSCTT-CEEEEECTT------------------
T ss_pred HHHHHHHHHcCCCEEEEeccCC-HH----H-------HHHHHHHHHHhcCCC-CEEEEECCC------------------
Confidence 46678888889876554 421 11 1 137788888889865 566788543
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
||.. -+..++++.++++|+ .| +.-+. |++.++++++.+++||++.+.+.++
T Consensus 199 ----------------~~~~---~~a~~~~~~l~~~~i-~i-------E~P~~--~~~~~~~l~~~~~iPI~~de~i~~~ 249 (379)
T 2rdx_A 199 ----------------GWRV---DNAIRLARATRDLDY-IL-------EQPCR--SYEECQQVRRVADQPMKLDECVTGL 249 (379)
T ss_dssp ----------------CSCH---HHHHHHHHHTTTSCC-EE-------ECCSS--SHHHHHHHHTTCCSCEEECTTCCSH
T ss_pred ----------------CCCH---HHHHHHHHHHHhCCe-EE-------eCCcC--CHHHHHHHHhhCCCCEEEeCCcCCH
Confidence 2321 135678888888887 43 11222 9999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
++++++++...++.+.+--.-..|.....++.+.+++.|+++
T Consensus 250 ~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~ 291 (379)
T 2rdx_A 250 HMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPV 291 (379)
T ss_dssp HHHHHHHHHTCCSEEEEETTTTTSHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCeE
Confidence 999999986678888876666666656678888888888876
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0019 Score=62.78 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHc--CCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 308 KPVELARQYYKE--GADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 308 ~p~~~a~~~~~~--g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
+|++.++.+.+. +++.+++.-.....++..-....++.++++++.+ .+|+.++|||+. +. +.++.
T Consensus 124 t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~n-----------i~~~~ 191 (228)
T 1h1y_A 124 TPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP-ST-----------IDVAA 191 (228)
T ss_dssp SCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCST-TT-----------HHHHH
T ss_pred CCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCH-HH-----------HHHHH
Confidence 556667777776 8998888655532222222344577788888777 899999999998 44 88999
Q ss_pred HcCcceeecchhhhcc
Q 045794 385 RSGADKISIGSDAVYA 400 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~ 400 (578)
++|||.+|+||+.+..
T Consensus 192 ~aGaD~vvvGsai~~~ 207 (228)
T 1h1y_A 192 SAGANCIVAGSSIFGA 207 (228)
T ss_dssp HHTCCEEEESHHHHTS
T ss_pred HcCCCEEEECHHHHCC
Confidence 9999999999998874
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00075 Score=68.90 Aligned_cols=81 Identities=14% Similarity=-0.042 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHcC-CCeEEEEecc-------cCCC-----------CCCC---CchhHHHHHHHhhhc-cccEEEeCCcc
Q 045794 308 KPVELARQYYKEG-ADEISFLNIT-------GFRD-----------FPLG---DLPMLQVLRLTSENV-FVPLTVGGGIR 364 (578)
Q Consensus 308 ~p~~~a~~~~~~g-~~~i~~~Dl~-------~~~~-----------~~~~---~~~~~~~i~~i~~~~-~~pi~~gGGir 364 (578)
+..++|+.+.+.| ++.|++.+.. .... +..+ ....++.++++++.+ ++||...|||+
T Consensus 175 ~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~ 254 (314)
T 2e6f_A 175 HFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVY 254 (314)
T ss_dssp HHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEESSCC
T ss_pred HHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4556799999999 9999876522 1000 0001 123478899999988 99999999999
Q ss_pred ccccCCCCccChHHHHHHHHHcCcceeecchhhhc
Q 045794 365 DFTDANGRHYSSLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 365 ~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
+.+| +.+++.+|||.|.+||..+.
T Consensus 255 ~~~d-----------a~~~l~~GAd~V~ig~~~l~ 278 (314)
T 2e6f_A 255 SGED-----------AFLHILAGASMVQVGTALQE 278 (314)
T ss_dssp SHHH-----------HHHHHHHTCSSEEECHHHHH
T ss_pred CHHH-----------HHHHHHcCCCEEEEchhhHh
Confidence 9977 99999999999999999996
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0059 Score=60.76 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCC-cEEEecCCC--CHHHHHHHHH---hcCchHHhhhhhh
Q 045794 482 ELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSI-PVIASSGAG--AVEHFSDVFR---KTNASAALAAGIF 555 (578)
Q Consensus 482 e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~i-pVIasGGi~--s~eDi~~l~~---~~G~~gv~vgsa~ 555 (578)
..++.+.+.|++.|-. ... .+.+.++++++.+++ ||+++|||+ +.+++.+..+ ..|++|+++|+++
T Consensus 163 ~a~~~a~~~GAD~vkt-~~~-------~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI 234 (263)
T 1w8s_A 163 YAARIALELGADAMKI-KYT-------GDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNV 234 (263)
T ss_dssp HHHHHHHHHTCSEEEE-ECC-------SSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred HHHHHHHHcCCCEEEE-cCC-------CCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhh
Confidence 4467889999997653 321 267899999888887 999999999 8888766652 3899999999999
Q ss_pred ccCCCCHHHHHHHH
Q 045794 556 HRKEVPIQSVKEHL 569 (578)
Q Consensus 556 ~~~~~~~~~~~~~l 569 (578)
.+.+-+ .+..+.|
T Consensus 235 ~~~~dp-~~~~~~l 247 (263)
T 1w8s_A 235 WQRRDA-LKFARAL 247 (263)
T ss_dssp HTSTTH-HHHHHHH
T ss_pred cCCcCH-HHHHHHH
Confidence 887754 4444433
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00063 Score=66.49 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-----cccEEEeCCccccccCCCCccChHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-----FVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-----~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+|.+..+.+.+ ++|.+++.=.....++..-....++.|+++++.+ ++||+++|||+. +. +.+
T Consensus 123 t~~e~~~~~~~-~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~-----------~~~ 189 (230)
T 1tqj_A 123 TPLDFLEYVLP-VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NN-----------TWQ 189 (230)
T ss_dssp CCGGGGTTTGG-GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TT-----------THH
T ss_pred CcHHHHHHHHh-cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HH-----------HHH
Confidence 45555554433 7998888877754333222345677788888776 799999999998 54 899
Q ss_pred HHHcCcceeecchhhhcc
Q 045794 383 YFRSGADKISIGSDAVYA 400 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~ 400 (578)
+.++|||.+|+||+.+..
T Consensus 190 ~~~aGad~vvvGSai~~a 207 (230)
T 1tqj_A 190 VLEAGANAIVAGSAVFNA 207 (230)
T ss_dssp HHHHTCCEEEESHHHHTS
T ss_pred HHHcCCCEEEECHHHHCC
Confidence 999999999999998874
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0016 Score=66.91 Aligned_cols=78 Identities=24% Similarity=0.312 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCC--CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLG--DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~--~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
+.|+...+.|+|.|.+....+ +++.+ ...++++++++.+.+++||.++|||++.+| +.+++.+||
T Consensus 129 ~~a~~~~~~GaD~i~v~g~~~--GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~-----------v~~al~~GA 195 (328)
T 2gjl_A 129 RHALKAERLGVDAVSIDGFEC--AGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRG-----------LVAALALGA 195 (328)
T ss_dssp HHHHHHHHTTCSEEEEECTTC--SBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHH-----------HHHHHHHTC
T ss_pred HHHHHHHHcCCCEEEEECCCC--CcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHH-----------HHHHHHcCC
Confidence 456777889999888643332 22322 136789999999888999999999999866 999999999
Q ss_pred ceeecchhhhccc
Q 045794 389 DKISIGSDAVYAA 401 (578)
Q Consensus 389 ~~vv~gt~~~~~~ 401 (578)
+.|.+||..+..+
T Consensus 196 dgV~vGs~~~~~~ 208 (328)
T 2gjl_A 196 DAINMGTRFLATR 208 (328)
T ss_dssp SEEEESHHHHTSS
T ss_pred CEEEECHHHHcCc
Confidence 9999999988753
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0024 Score=66.77 Aligned_cols=144 Identities=11% Similarity=0.060 Sum_probs=104.4
Q ss_pred HHHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|.+.+=+ |...++ + ..+.++.+.+.+|++ +.+.+|+..
T Consensus 151 ~~~a~~~~~~Gf~~iKik~g~~~~~----~-------~~e~v~avr~a~G~d-~~l~vDan~------------------ 200 (371)
T 2ovl_A 151 KTQADRFLAGGFRAIKMKVGRPDLK----E-------DVDRVSALREHLGDS-FPLMVDANM------------------ 200 (371)
T ss_dssp HHHHHHHHHTTCSCEEEECCCSSHH----H-------HHHHHHHHHHHHCTT-SCEEEECTT------------------
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHH----H-------HHHHHHHHHHHhCCC-CeEEEECCC------------------
Confidence 35677788888775544 421111 1 137788888889865 556788543
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|.. -+..++++.++++|+..| +.-..-.|++.++++++.+++||++.+.+.+.
T Consensus 201 ----------------~~~~---~~a~~~~~~l~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~iPI~~dE~~~~~ 254 (371)
T 2ovl_A 201 ----------------KWTV---DGAIRAARALAPFDLHWI-------EEPTIPDDLVGNARIVRESGHTIAGGENLHTL 254 (371)
T ss_dssp ----------------CSCH---HHHHHHHHHHGGGCCSEE-------ECCSCTTCHHHHHHHHHHHCSCEEECTTCCSH
T ss_pred ----------------CCCH---HHHHHHHHHHHhcCCCEE-------ECCCCcccHHHHHHHHhhCCCCEEeCCCCCCH
Confidence 2321 135788999999998754 22223348999999999899999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
++++++++...++.+.+--.-..|.....++.+.+++.|++|
T Consensus 255 ~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~gi~~ 296 (371)
T 2ovl_A 255 YDFHNAVRAGSLTLPEPDVSNIGGYTTFRKVAALAEANNMLL 296 (371)
T ss_dssp HHHHHHHHHTCCSEECCCTTTTTSHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHcCCCCEEeeCccccCCHHHHHHHHHHHHHcCCeE
Confidence 999999986678988877666666666778888889999876
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0037 Score=65.80 Aligned_cols=144 Identities=9% Similarity=0.113 Sum_probs=104.1
Q ss_pred HHHHHHHHHcCccee--ecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKI--SIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~v--v~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|...+ =+|.. ... ..+.++.+.+.+|++ +.+.+|+..
T Consensus 156 ~~~a~~~~~~G~~~iKiKvG~~-~~~-----------d~~~v~avR~a~g~d-~~l~vDan~------------------ 204 (389)
T 3ozy_A 156 ADELAGWVEQGFTAAKLKVGRA-PRK-----------DAANLRAMRQRVGAD-VEILVDANQ------------------ 204 (389)
T ss_dssp HHHHHHHHHTTCSEEEEECCSC-HHH-----------HHHHHHHHHHHHCTT-SEEEEECTT------------------
T ss_pred HHHHHHHHHCCCCEEeeccCCC-HHH-----------HHHHHHHHHHHcCCC-ceEEEECCC------------------
Confidence 456777888887644 34541 111 137788888999865 566788543
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHH-hhCCCcEEEecCCCC
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLIS-DAVSIPVIASSGAGA 533 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~-~~~~ipVIasGGi~s 533 (578)
+|.. -+..++++.++++|+..| +.-....|++.+++++ +.+++||++.+.+.+
T Consensus 205 ----------------~~~~---~~A~~~~~~l~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~~iPIa~dE~i~~ 258 (389)
T 3ozy_A 205 ----------------SLGR---HDALAMLRILDEAGCYWF-------EEPLSIDDIEGHRILRAQGTPVRIATGENLYT 258 (389)
T ss_dssp ----------------CCCH---HHHHHHHHHHHHTTCSEE-------ESCSCTTCHHHHHHHHTTCCSSEEEECTTCCH
T ss_pred ----------------CcCH---HHHHHHHHHHHhcCCCEE-------ECCCCcccHHHHHHHHhcCCCCCEEeCCCCCC
Confidence 2322 135788999999998766 2223334899999999 999999999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeec
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 577 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~ 577 (578)
.+|++++++...++.+.+--....|-....++.+.+...|++|-
T Consensus 259 ~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~ 302 (389)
T 3ozy_A 259 RNAFNDYIRNDAIDVLQADASRAGGITEALAISASAASAHLAWN 302 (389)
T ss_dssp HHHHHHHHHTTCCSEECCCTTTSSCHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEE
Confidence 99999999766688887665555565567778888888898763
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0028 Score=61.71 Aligned_cols=82 Identities=13% Similarity=0.083 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHcC-CCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEG-ADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g-~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+|++.++.+.+.| +|.+.+.=.+.-.++..-....++-|+++++.. +++|++.|||+. ++++++.
T Consensus 124 ~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~------------~ti~~~~ 191 (227)
T 1tqx_A 124 KTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNI------------ETTEISA 191 (227)
T ss_dssp TSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCH------------HHHHHHH
T ss_pred CCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCeEEEECCCCH------------HHHHHHH
Confidence 57788888888775 999988777643333222345677788887765 789999999996 4599999
Q ss_pred HcCcceeecchhhhcc
Q 045794 385 RSGADKISIGSDAVYA 400 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~ 400 (578)
++|||.+|+||+.+..
T Consensus 192 ~aGAd~~V~GsaIf~~ 207 (227)
T 1tqx_A 192 SHGANIIVAGTSIFNA 207 (227)
T ss_dssp HHTCCEEEESHHHHTC
T ss_pred HcCCCEEEEeHHHhCC
Confidence 9999999999998873
|
| >3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0011 Score=63.70 Aligned_cols=69 Identities=16% Similarity=0.271 Sum_probs=50.1
Q ss_pred HHHHHHHHC-CCeEEEeCCc-----------------cCC-CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 62 SVRNAIRHL-GFGIKDVQTP-----------------EDI-LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 62 ~i~~~L~~~-Gv~v~~v~~~-----------------~dl-~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
...+.|++. |+++.++... +++ .++|.||+|||..... ....+.++|+++.+.++|
T Consensus 21 ~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpGG~~~~~-----~~~~l~~~l~~~~~~gk~ 95 (206)
T 3f5d_A 21 YLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGGDSWSN-----DNKKLLHFVKTAFQKNIP 95 (206)
T ss_dssp HHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCBSCCCC-----CCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcCCCChhh-----cCHHHHHHHHHHHHcCCE
Confidence 445666666 7777665321 223 3799999999853321 222567899999999999
Q ss_pred EEEEechHHHHhh
Q 045794 123 FLGICLGLQLLFQ 135 (578)
Q Consensus 123 IlGIClG~QlLa~ 135 (578)
|.+||.|-++|+.
T Consensus 96 iaaiC~G~~~La~ 108 (206)
T 3f5d_A 96 IAAICGAVDFLAK 108 (206)
T ss_dssp EEEETHHHHHHHH
T ss_pred EEEECHHHHHHHH
Confidence 9999999999998
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0036 Score=65.90 Aligned_cols=142 Identities=11% Similarity=0.084 Sum_probs=102.8
Q ss_pred HHHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|.+.+=+ |. .+. ++ .+.++.+.+.+|++ +.+.+|+..
T Consensus 169 ~~~a~~~~~~Gf~~vKik~g~---~~~-~~--------~e~v~avr~a~g~d-~~l~vDan~------------------ 217 (388)
T 2nql_A 169 GELAKYWQDRGFNAFKFATPV---ADD-GP--------AAEIANLRQVLGPQ-AKIAADMHW------------------ 217 (388)
T ss_dssp HHHHHHHHHTTCCEEEEEGGG---CTT-CH--------HHHHHHHHHHHCTT-SEEEEECCS------------------
T ss_pred HHHHHHHHHhCCCEEEEeCCC---CCh-HH--------HHHHHHHHHHhCCC-CEEEEECCC------------------
Confidence 35677788888776544 32 111 11 27788888889865 566788542
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|.. -+..++++.++++|+..| +.-+...|++.++++++.+++||++.+.+.++
T Consensus 218 ----------------~~~~---~~a~~~~~~l~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~iPI~~dE~~~~~ 271 (388)
T 2nql_A 218 ----------------NQTP---ERALELIAEMQPFDPWFA-------EAPVWTEDIAGLEKVSKNTDVPIAVGEEWRTH 271 (388)
T ss_dssp ----------------CSCH---HHHHHHHHHHGGGCCSCE-------ECCSCTTCHHHHHHHHTSCCSCEEECTTCCSH
T ss_pred ----------------CCCH---HHHHHHHHHHhhcCCCEE-------ECCCChhhHHHHHHHHhhCCCCEEEeCCcCCH
Confidence 2322 135788999999998754 22233458999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
++++++++...++.+.+--.- .|.....++.+.+++.|+++
T Consensus 272 ~~~~~~i~~~~~d~v~ik~~~-GGit~~~~i~~~A~~~g~~~ 312 (388)
T 2nql_A 272 WDMRARIERCRIAIVQPEMGH-KGITNFIRIGALAAEHGIDV 312 (388)
T ss_dssp HHHHHHHTTSCCSEECCCHHH-HCHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHcCCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeE
Confidence 999999976668888876555 66555677888888888876
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.004 Score=60.01 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHcCCCeEEE---EecccCCCCCCCCchhHHHHHHHhhhcc-ccEEEeCCccccccCCCCccChHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISF---LNITGFRDFPLGDLPMLQVLRLTSENVF-VPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~---~Dl~~~~~~~~~~~~~~~~i~~i~~~~~-~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
.+|.+ ++...+.|++.+.+ .+- ....+. .....++.++++++.+. +|+.++|||+ .++ +++
T Consensus 124 ~t~~e-~~~a~~~g~d~v~~~~v~~t-~~~~~~-~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~n-----------v~~ 188 (227)
T 2tps_A 124 HTMSE-VKQAEEDGADYVGLGPIYPT-ETKKDT-RAVQGVSLIEAVRRQGISIPIVGIGGIT-IDN-----------AAP 188 (227)
T ss_dssp CSHHH-HHHHHHHTCSEEEECCSSCC-CSSSSC-CCCCTTHHHHHHHHTTCCCCEEEESSCC-TTT-----------SHH
T ss_pred CCHHH-HHHHHhCCCCEEEECCCcCC-CCCCCC-CCccCHHHHHHHHHhCCCCCEEEEcCCC-HHH-----------HHH
Confidence 36667 55666889998875 222 111110 12334788899888787 9999999999 776 888
Q ss_pred HHHcCcceeecchhhhcc
Q 045794 383 YFRSGADKISIGSDAVYA 400 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~ 400 (578)
++++|++.|++||..+..
T Consensus 189 ~~~~Ga~gv~vgs~i~~~ 206 (227)
T 2tps_A 189 VIQAGADGVSMISAISQA 206 (227)
T ss_dssp HHHTTCSEEEESHHHHTS
T ss_pred HHHcCCCEEEEhHHhhcC
Confidence 999999999999988863
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0012 Score=66.24 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+.+-++.+.+.+...++++-+.+..+.... .....++++++++.+++||.+||||++.|+ ++++ .
T Consensus 155 s~~eri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~-----------a~~~--~ 221 (271)
T 1ujp_A 155 STDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKAT-----------AAQA--A 221 (271)
T ss_dssp CCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTCCSCEEEESCCCSHHH-----------HHHH--T
T ss_pred CCHHHHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHH-----------HHHh--c
Confidence 4446666666666666777655543222111 123357889999888999999999999876 8886 8
Q ss_pred Ccceeecchhhhcc
Q 045794 387 GADKISIGSDAVYA 400 (578)
Q Consensus 387 Ga~~vv~gt~~~~~ 400 (578)
|||.||+||+..+.
T Consensus 222 ~ADgVIVGSAi~~~ 235 (271)
T 1ujp_A 222 VADGVVVGSALVRA 235 (271)
T ss_dssp TSSEEEECHHHHHH
T ss_pred CCCEEEEChHHhcc
Confidence 99999999998873
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.031 Score=54.28 Aligned_cols=194 Identities=19% Similarity=0.236 Sum_probs=116.2
Q ss_pred ecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 305 NLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 305 ~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
-..++.++ + ..+.|+|.+=++=-... .|-...+..++|.+....|+.+-+=..+.+ +.++.+-
T Consensus 27 Git~~ed~-~-a~~~gaD~iGfIf~~~S-----pR~V~~~~A~~i~~~~~~~~~~v~v~v~~~----------ei~~~i~ 89 (228)
T 4aaj_A 27 GIKSLEEL-E-IVEKHADATGVVVNSNS-----KRRIPLEKAREIIENSAIPVFLVSTMVGFS----------EWAMAIE 89 (228)
T ss_dssp CCCSHHHH-H-HHHTTCSEEEEECSSSS-----TTBCCHHHHHHHHHHCSSCEEEEECCCCHH----------HHHHHHH
T ss_pred CCCcHHHH-H-HHHcCCCEEEEEecCCC-----CCCCCHHHHHHHHHhhCCCCEEEeccCchH----------HHHHHHH
Confidence 34566664 4 45789998877632221 245567888888877666665433223332 2234444
Q ss_pred HcCcceeec-chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 385 RSGADKISI-GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 385 ~~Ga~~vv~-gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
+.+.|.|=+ |.+ +|+.++++.++|| -.|+-++.+... .
T Consensus 90 ~~~ld~vQLHG~E---------------~~~~~~~l~~~~~-~~viKa~~v~~~------------------~------- 128 (228)
T 4aaj_A 90 RTGAQYIQVHSNA---------------LPQTIDTLKKEFG-VFVMKAFRVPTI------------------S------- 128 (228)
T ss_dssp HHTCSEEEECSCC---------------CHHHHHHHHHHHC-CEEEEEEECCSS------------------C-------
T ss_pred hccchheeccccc---------------CHHHHHHHhhccC-ceEEEEEEeccc------------------c-------
Confidence 556665544 321 2467888888886 345555543321 0
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRK 543 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~ 543 (578)
.....+......++....++.+++ |- .-|+.+-+||++++.+... .|++.+||+ +++.+.++.+.
T Consensus 129 ----------~~~~~~~~~~~~~~~~~~~d~~Ll-Ds-~GGtG~~fDW~~~~~~~~~--~p~iLAGGL-~peNV~~Ai~~ 193 (228)
T 4aaj_A 129 ----------KNPEEDANRLLSEISRYNADMVLL-DT-GAGSGKLHDLRVSSLVARK--IPVIVAGGL-NAENVEEVIKV 193 (228)
T ss_dssp ----------SCHHHHHHHHHHHHHHSCCSEEEE-EC--------CCCHHHHHHHHH--SCEEEESSC-CTTTHHHHHHH
T ss_pred ----------cchhhhHHHHHHHHhccCCCEEcc-CC-CCCCcCcCChHHHHHhhhc--CCeEEECCC-CHHHHHHHHHH
Confidence 000112334556666777887775 43 4577778999999988654 699999999 67899988876
Q ss_pred cCchHHhhhhhhcc-CCCCHHHHHHHHHh
Q 045794 544 TNASAALAAGIFHR-KEVPIQSVKEHLYK 571 (578)
Q Consensus 544 ~G~~gv~vgsa~~~-~~~~~~~~~~~l~~ 571 (578)
.+..||=|.|.+-. |.-+.+.+++++++
T Consensus 194 ~~P~gVDVsSGVEs~G~KD~~KI~~Fi~~ 222 (228)
T 4aaj_A 194 VKPYGVDVSSGVEKYGIKDPKLVEEFVRR 222 (228)
T ss_dssp HCCSEEEESGGGEETTEECHHHHHHHHHH
T ss_pred hCCCEEEeCCCCCCCCCcCHHHHHHHHHH
Confidence 78888878887743 44456667766654
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.003 Score=67.46 Aligned_cols=86 Identities=20% Similarity=0.125 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCC----------CCCCC---CchhHHHHHHHhhhc--cccEEEeCCccccccCCCC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFR----------DFPLG---DLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGR 372 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~----------~~~~~---~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~ 372 (578)
+..++|+.+.+.|+|.|++..=...+ ++..+ ....+++|+++.+.+ .+||...|||++.+|
T Consensus 312 d~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~D---- 387 (443)
T 1tv5_A 312 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLD---- 387 (443)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHH----
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHH----
Confidence 67889999999999999987643211 01000 012468899999988 899999999999977
Q ss_pred ccChHHHHHHHHHcCcceeecchhhhccchhh
Q 045794 373 HYSSLEVASEYFRSGADKISIGSDAVYAAEDY 404 (578)
Q Consensus 373 ~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~ 404 (578)
+.+.+.+|||-|-+||..+...|.+
T Consensus 388 -------A~e~l~aGAd~Vqigrall~~gP~l 412 (443)
T 1tv5_A 388 -------ALEKIEAGASVCQLYSCLVFNGMKS 412 (443)
T ss_dssp -------HHHHHHTTEEEEEESHHHHHHGGGH
T ss_pred -------HHHHHHcCCCEEEEcHHHHhcChHH
Confidence 9999999999999999988633433
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0015 Score=62.68 Aligned_cols=83 Identities=19% Similarity=0.128 Sum_probs=60.8
Q ss_pred HHHcCCcEEEEeccCC--CCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc--cCCCCH
Q 045794 487 VEDLGAGEILLNCIDC--DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH--RKEVPI 562 (578)
Q Consensus 487 ~~~~G~~~ii~tdi~~--dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~--~~~~~~ 562 (578)
+.++.++.+++-.-.. -|+.+-+||++++.+. ....|++.+||+ +++.+.++.+..+++||=+.|.+- .|.-+.
T Consensus 115 ~~~~~~d~~LlD~~~~~~GGtG~~fdw~~l~~~~-~~~~p~~LAGGL-~peNV~~ai~~~~p~gVDvsSGvE~~pG~KD~ 192 (205)
T 1nsj_A 115 ALNYREFPILLDTKTPEYGGSGKTFDWSLILPYR-DRFRYLVLSGGL-NPENVRSAIDVVRPFAVDVSSGVEAFPGKKDH 192 (205)
T ss_dssp HGGGTTSCEEEEESCSSSSSCCSCCCGGGTGGGG-GGSSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGGEEETTEECH
T ss_pred HHHcCCCEEEECCCCCCCCCCCCccCHHHHHhhh-cCCCcEEEECCC-CHHHHHHHHHhcCCCEEEECCceecCCCCcCH
Confidence 3344477777533221 4778888999887652 336799999999 779998877667999999999986 366778
Q ss_pred HHHHHHHHh
Q 045794 563 QSVKEHLYK 571 (578)
Q Consensus 563 ~~~~~~l~~ 571 (578)
..++++++.
T Consensus 193 ~ki~~fi~~ 201 (205)
T 1nsj_A 193 DSIKMFIKN 201 (205)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877753
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0009 Score=63.20 Aligned_cols=46 Identities=15% Similarity=0.333 Sum_probs=41.4
Q ss_pred hHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhh
Q 045794 342 MLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAV 398 (578)
Q Consensus 342 ~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~ 398 (578)
..++|+++++.+++||.+||+||+.|| +++.+++||+.|+.++..+
T Consensus 138 ~p~iI~~i~~~~~~PiIaGGlI~~~ed-----------v~~al~aGA~aVsTs~~~L 183 (192)
T 3kts_A 138 IPEQVQKMTQKLHIPVIAGGLIETSEQ-----------VNQVIASGAIAVTTSNKHL 183 (192)
T ss_dssp CHHHHHHHHHHHCCCEEEESSCCSHHH-----------HHHHHTTTEEEEEECCGGG
T ss_pred hHHHHHHHHHhcCCCEEEECCcCCHHH-----------HHHHHHcCCeEEEeCCHHH
Confidence 358999999999999999999999977 9999999999999987554
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0024 Score=63.55 Aligned_cols=81 Identities=20% Similarity=0.147 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCC--chhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGD--LPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~--~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
++.+-++.+.+.....++++-+.+..+..... ....+.++++++.+++||.+|+||++.++ +++ +.
T Consensus 158 t~~~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~-----------~~~-~~ 225 (262)
T 2ekc_A 158 STRKRIKLICEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEH-----------ARE-IG 225 (262)
T ss_dssp CCHHHHHHHHHHCSSCEEEESSCC---------CHHHHHHHHHHHHHCCSCEEEESSCCSHHH-----------HHH-HH
T ss_pred CCHHHHHHHHHhCCCCEEEEecCCccCCCCCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHH-----------HHH-HH
Confidence 34455555555555567777555433222111 22347889999888999999999999866 888 67
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
.|||.||+||+..+.
T Consensus 226 ~gADgvIVGSai~~~ 240 (262)
T 2ekc_A 226 SFADGVVVGSALVKL 240 (262)
T ss_dssp TTSSEEEECHHHHHH
T ss_pred cCCCEEEECHHHHhh
Confidence 899999999998874
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=96.66 E-value=0.013 Score=59.21 Aligned_cols=76 Identities=11% Similarity=0.092 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCC-HH----HHHHHHHhcCchHHhhhhhhc
Q 045794 482 ELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA-VE----HFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 482 e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s-~e----Di~~l~~~~G~~gv~vgsa~~ 556 (578)
..++...++|++.|-.. .+ + +.++++.+.+.+||+++||+.. .+ .++++++ .|++|+++|+.++
T Consensus 193 ~aariA~elGAD~VKt~-~t------~---e~~~~vv~~~~vPVv~~GG~~~~~~~~l~~v~~ai~-aGA~Gv~vGRnI~ 261 (295)
T 3glc_A 193 LATRIAAEMGAQIIKTY-YV------E---KGFERIVAGCPVPIVIAGGKKLPEREALEMCWQAID-QGASGVDMGRNIF 261 (295)
T ss_dssp HHHHHHHHTTCSEEEEE-CC------T---TTHHHHHHTCSSCEEEECCSCCCHHHHHHHHHHHHH-TTCSEEEESHHHH
T ss_pred HHHHHHHHhCCCEEEeC-CC------H---HHHHHHHHhCCCcEEEEECCCCCHHHHHHHHHHHHH-hCCeEEEeHHHHh
Confidence 47788889999976644 22 1 2467888888999999999984 32 4556665 7999999999998
Q ss_pred cCCCCHHHHHHHH
Q 045794 557 RKEVPIQSVKEHL 569 (578)
Q Consensus 557 ~~~~~~~~~~~~l 569 (578)
+.+. +..+.+.|
T Consensus 262 q~~d-p~~~~~al 273 (295)
T 3glc_A 262 QSDH-PVAMMKAV 273 (295)
T ss_dssp TSSS-HHHHHHHH
T ss_pred cCcC-HHHHHHHH
Confidence 8764 44444443
|
| >3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0031 Score=66.43 Aligned_cols=86 Identities=19% Similarity=0.307 Sum_probs=61.2
Q ss_pred CcEEEEEECCCC---CHHHHHHHHHHCCCeEEEeCCc----------------------------------cC--CCCCC
Q 045794 47 DSVVTLLDYGAG---NVRSVRNAIRHLGFGIKDVQTP----------------------------------ED--ILNAN 87 (578)
Q Consensus 47 ~~~I~vld~~~g---~~~~i~~~L~~~Gv~v~~v~~~----------------------------------~d--l~~~D 87 (578)
.++|+|+=++-. -.....+.|++.|+++.++... ++ ..++|
T Consensus 205 ~~ki~ill~dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D 284 (396)
T 3uk7_A 205 NKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYD 284 (396)
T ss_dssp CCEEEEECCTTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCS
T ss_pred cceEEEEecCCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcccCC
Confidence 456888755411 2335677899999999887431 01 24699
Q ss_pred EEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 88 RLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 88 GlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
.||+|||.. .. .......+.++++++.+.++||.+||.|.++|+.
T Consensus 285 ~livpGg~~--~~-~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~ 329 (396)
T 3uk7_A 285 ALVIPGGRA--PE-YLALNEHVLNIVKEFMNSEKPVASICHGQQILAA 329 (396)
T ss_dssp EEEECCBSH--HH-HHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHH
T ss_pred EEEECCCcc--hh-hhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHH
Confidence 999999852 11 1112235788999999999999999999999998
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0063 Score=61.53 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 482 ELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 482 e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
+-++++.+.|++.|.+-. .+.+.++++.+.+ .+|+.+|||| +++.+.++.+ +|+|++.+|+++|+-+
T Consensus 219 ee~~eA~~aGaD~I~ld~---------~~~e~l~~~v~~~~~~~~I~ASGGI-t~~~i~~~a~-~GvD~isvGsli~~a~ 287 (296)
T 1qap_A 219 DELDDALKAGADIIMLDN---------FNTDQMREAVKRVNGQARLEVSGNV-TAETLREFAE-TGVDFISVGALTKHVR 287 (296)
T ss_dssp HHHHHHHHTTCSEEEESS---------CCHHHHHHHHHTTCTTCCEEECCCS-CHHHHHHHHH-TTCSEEECSHHHHEEE
T ss_pred HHHHHHHHcCCCEEEECC---------CCHHHHHHHHHHhCCCCeEEEECCC-CHHHHHHHHH-cCCCEEEEeHHHcCCC
Confidence 456666788999877643 5667788877766 5899999999 9999999985 9999999999887543
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0014 Score=64.71 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.|.+.++...+.+-..+|++...+..+.... .....+.++++++.+++|+.+|+||++.++ ++++.+
T Consensus 152 t~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~-----------a~~~~~- 219 (252)
T 3tha_A 152 TPKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQD-----------VKRMRK- 219 (252)
T ss_dssp SCHHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEEESSCCSHHH-----------HHHHTT-
T ss_pred CcHHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHH-----------HHHHHh-
Confidence 5567888888877777999887665332111 012356788888888999999999999876 888875
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
+||.||+||+.++
T Consensus 220 ~ADGVIVGSAiVk 232 (252)
T 3tha_A 220 VADGVIVGTSIVK 232 (252)
T ss_dssp TSSEEEECHHHHH
T ss_pred cCCEEEECHHHHH
Confidence 6999999999886
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0016 Score=67.65 Aligned_cols=80 Identities=14% Similarity=-0.038 Sum_probs=61.0
Q ss_pred HHHHHHHHHcC-CCeEEE---------EecccCC---------CCCCC---CchhHHHHHHHhhhc-cccEEEeCCcccc
Q 045794 310 VELARQYYKEG-ADEISF---------LNITGFR---------DFPLG---DLPMLQVLRLTSENV-FVPLTVGGGIRDF 366 (578)
Q Consensus 310 ~~~a~~~~~~g-~~~i~~---------~Dl~~~~---------~~~~~---~~~~~~~i~~i~~~~-~~pi~~gGGir~~ 366 (578)
.++|+.+.+.| ++.|.+ +|+++-. ++..+ +...++.|+++.+.. .+||...|||++.
T Consensus 210 ~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~~~ipII~~GGI~s~ 289 (354)
T 4ef8_A 210 DAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKLIFGCGGVYTG 289 (354)
T ss_dssp HHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSEEEEESCCCSH
T ss_pred HHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhCCCCCEEEECCcCCH
Confidence 45677777887 999886 5654311 00000 125688999999886 6999999999999
Q ss_pred ccCCCCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 367 TDANGRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 367 ~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+| +.+++.+||+.|.+|+.++.+
T Consensus 290 ~d-----------a~~~l~aGAd~V~vgra~l~~ 312 (354)
T 4ef8_A 290 ED-----------AFLHVLAGASMVQVGTALQEE 312 (354)
T ss_dssp HH-----------HHHHHHHTEEEEEECHHHHHH
T ss_pred HH-----------HHHHHHcCCCEEEEhHHHHHh
Confidence 77 889999999999999999985
|
| >3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0015 Score=64.31 Aligned_cols=53 Identities=13% Similarity=0.263 Sum_probs=38.5
Q ss_pred CCCCEEEECCCCCchHHHHH---------HHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 84 LNANRLIFPGVGAFAAAMDV---------LNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 84 ~~~DGlILpGGg~~~~~~~~---------l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.+||+||||||......+.. .....+.++++++.+.++||.+||.|..+|+.+
T Consensus 106 ~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~a 167 (242)
T 3l3b_A 106 EEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVAL 167 (242)
T ss_dssp GGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHH
T ss_pred ccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 46999999998421111100 011246789999999999999999999999984
|
| >3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0028 Score=64.05 Aligned_cols=89 Identities=9% Similarity=0.191 Sum_probs=68.1
Q ss_pred CcEEEEEECCCC----CHHHHHHHHHHCCC-eEEEeCCc-----c------CCCCCCEEEECCCCCchHHHHHHHhhcHH
Q 045794 47 DSVVTLLDYGAG----NVRSVRNAIRHLGF-GIKDVQTP-----E------DILNANRLIFPGVGAFAAAMDVLNKTGMA 110 (578)
Q Consensus 47 ~~~I~vld~~~g----~~~~i~~~L~~~Gv-~v~~v~~~-----~------dl~~~DGlILpGGg~~~~~~~~l~~~~l~ 110 (578)
+++|+++-.-++ +...+.++|+++|+ ++.+++.. . .+.++|+|+++||.. ..-...+...++.
T Consensus 56 ~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt-~~l~~~l~~t~l~ 134 (291)
T 3en0_A 56 DAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQ-LRLCGLLADTPLM 134 (291)
T ss_dssp GCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCH-HHHHHHHTTCHHH
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCH-HHHHHHHHhCCHH
Confidence 467999865332 34567788999999 67776431 1 257899999999763 4455666777899
Q ss_pred HHHHHHHhCC-CCEEEEechHHHHhhh
Q 045794 111 EALCAYIEKD-RPFLGICLGLQLLFQS 136 (578)
Q Consensus 111 ~~i~~~~~~g-~PIlGIClG~QlLa~a 136 (578)
+.|+++++++ .|+.|.|.|..+++..
T Consensus 135 ~~L~~~~~~G~~~~~GtSAGA~i~~~~ 161 (291)
T 3en0_A 135 DRIRQRVHNGEISLAGTSAGAAVMGHH 161 (291)
T ss_dssp HHHHHHHHTTSSEEEEETHHHHTTSSE
T ss_pred HHHHHHHHCCCeEEEEeCHHHHhhhHh
Confidence 9999999999 9999999999998875
|
| >3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.004 Score=65.62 Aligned_cols=85 Identities=19% Similarity=0.278 Sum_probs=59.9
Q ss_pred cEEEEEECCCC---CHHHHHHHHHHCCCeEEEeCCcc----------------------------------C--CCCCCE
Q 045794 48 SVVTLLDYGAG---NVRSVRNAIRHLGFGIKDVQTPE----------------------------------D--ILNANR 88 (578)
Q Consensus 48 ~~I~vld~~~g---~~~~i~~~L~~~Gv~v~~v~~~~----------------------------------d--l~~~DG 88 (578)
++|+|+=++-- -.....+.|+++|+++.++.... + ..+||.
T Consensus 13 ~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 92 (396)
T 3uk7_A 13 RTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYDG 92 (396)
T ss_dssp CEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCSE
T ss_pred CeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCCE
Confidence 45777654311 23345678999999998874321 1 246999
Q ss_pred EEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 89 LIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 89 lILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
||+|||.. .. .......+.++++++.+.++||.+||-|.++|+.
T Consensus 93 livpGG~~--~~-~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~ 136 (396)
T 3uk7_A 93 LVIPGGRA--PE-YLALTASVVELVKEFSRSGKPIASICHGQLILAA 136 (396)
T ss_dssp EEECCBSH--HH-HHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHH
T ss_pred EEECCCcc--hh-hcccCHHHHHHHHHHHHcCCEEEEECchHHHHHh
Confidence 99999852 11 1112235788999999999999999999999998
|
| >3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0022 Score=62.59 Aligned_cols=85 Identities=9% Similarity=0.107 Sum_probs=57.7
Q ss_pred cEEEEEECCCCC---HHHHHHHHHH-CCCeEEEeCCc------------------cCCCCCCEEEECCCCCchHHHHHHH
Q 045794 48 SVVTLLDYGAGN---VRSVRNAIRH-LGFGIKDVQTP------------------EDILNANRLIFPGVGAFAAAMDVLN 105 (578)
Q Consensus 48 ~~I~vld~~~g~---~~~i~~~L~~-~Gv~v~~v~~~------------------~dl~~~DGlILpGGg~~~~~~~~l~ 105 (578)
++|+|+=++--. +....+.|+. .|+++.++... +++.++|.||+|||... .. ...
T Consensus 6 ~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~~~~D~livpGG~g~-~~--~~~ 82 (231)
T 3noq_A 6 VQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADCPPLDVICIPGGTGV-GA--LME 82 (231)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTCCCCSEEEECCSTTH-HH--HTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHCCcCCEEEECCCCCh-hh--hcc
Confidence 357777554212 2234566766 57777766321 23467999999998532 11 112
Q ss_pred hhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 106 KTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 106 ~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
...+.++|+++.+.+++|.+||-|-.+|+.
T Consensus 83 ~~~l~~~lr~~~~~g~~v~aiC~G~~~La~ 112 (231)
T 3noq_A 83 DPQALAFIRQQAARARYVTSVSTGSLVLGA 112 (231)
T ss_dssp CHHHHHHHHHHHTTCSEEEEETTHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 235788999999999999999999999998
|
| >3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0035 Score=65.28 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=59.5
Q ss_pred CcEEEEEECCCC---CHHHHHHHHHHCCCeEEEeCCc--------------------cCC--CCCCEEEECCCCCchHHH
Q 045794 47 DSVVTLLDYGAG---NVRSVRNAIRHLGFGIKDVQTP--------------------EDI--LNANRLIFPGVGAFAAAM 101 (578)
Q Consensus 47 ~~~I~vld~~~g---~~~~i~~~L~~~Gv~v~~v~~~--------------------~dl--~~~DGlILpGGg~~~~~~ 101 (578)
.++|+|+=++-- -+....+.|+..|+++.++... +++ ..||.||+|||.. ..
T Consensus 10 mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g--~~- 86 (365)
T 3fse_A 10 KKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMA--PD- 86 (365)
T ss_dssp -CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTH--HH-
T ss_pred ceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcc--hh-
Confidence 346888765421 2234568899999988876321 112 2589999999862 11
Q ss_pred HHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 102 DVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 102 ~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
.......+.++++++.+.++||.+||.|-.+|+.
T Consensus 87 ~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~ 120 (365)
T 3fse_A 87 KMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIE 120 (365)
T ss_dssp HHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHH
T ss_pred hccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHH
Confidence 1112235778999999999999999999999998
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0075 Score=63.48 Aligned_cols=147 Identities=13% Similarity=0.158 Sum_probs=103.0
Q ss_pred HHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCC
Q 045794 377 LEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLG 456 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~ 456 (578)
.+.++++.+.|.+.+=|-.. .. .+++ ..+.++.+.+.+|++ +.+.+|+..
T Consensus 154 ~~~a~~~~~~Gf~~vKik~g-~~-~~~~-------~~e~v~avR~a~G~d-~~l~vDan~-------------------- 203 (391)
T 2qgy_A 154 LRQIEKFYGKKYGGIKIYPM-LD-SLSI-------SIQFVEKVREIVGDE-LPLMLDLAV-------------------- 203 (391)
T ss_dssp HHHHHHHHHTTCSCEEECCC-CS-SHHH-------HHHHHHHHHHHHCSS-SCEEEECCC--------------------
T ss_pred HHHHHHHHHcCCCEEEEccC-CC-hHHH-------HHHHHHHHHHHhCCC-CEEEEEcCC--------------------
Confidence 35677788888876544210 01 0111 137788888889865 566678642
Q ss_pred CCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHH
Q 045794 457 PNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEH 536 (578)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eD 536 (578)
+|.. -+..++++.++++|+..| +.-....|++.++++++.+++||++.+.+.++++
T Consensus 204 --------------~~~~---~~a~~~~~~l~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~ 259 (391)
T 2qgy_A 204 --------------PEDL---DQTKSFLKEVSSFNPYWI-------EEPVDGENISLLTEIKNTFNMKVVTGEKQSGLVH 259 (391)
T ss_dssp --------------CSCH---HHHHHHHHHHGGGCCSEE-------ECSSCTTCHHHHHHHHHHCSSCEEECTTCCSHHH
T ss_pred --------------CCCH---HHHHHHHHHHHhcCCCeE-------eCCCChhhHHHHHHHHhhCCCCEEEcCCcCCHHH
Confidence 2321 135788999999998754 1222335899999999999999999999999999
Q ss_pred HHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeec
Q 045794 537 FSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 577 (578)
Q Consensus 537 i~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~ 577 (578)
++++++...++.+.+--.-..|.....++.+..++.|+++-
T Consensus 260 ~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~ 300 (391)
T 2qgy_A 260 FRELISRNAADIFNPDISGMGGLIDIIEISNEASNNGIFIS 300 (391)
T ss_dssp HHHHHHTTCCSEECCBTTTSSCHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHcCCCCEEEECcchhCCHHHHHHHHHHHHHCCCEEe
Confidence 99999755688887655555565556788888899998763
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0035 Score=74.23 Aligned_cols=86 Identities=20% Similarity=0.250 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEE---------ecccC------------CCCCCCCchh----HHHHHHHhhhc-cccEEEe
Q 045794 307 GKPVELARQYYKEGADEISFL---------NITGF------------RDFPLGDLPM----LQVLRLTSENV-FVPLTVG 360 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~---------Dl~~~------------~~~~~~~~~~----~~~i~~i~~~~-~~pi~~g 360 (578)
.+..++|+.+.+.|++.|++. |++.. .++..+ ... ++.++++.+.+ ++||...
T Consensus 715 ~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg-~~~~~~~~~~v~~v~~~~~~ipvi~~ 793 (1025)
T 1gte_A 715 TDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSG-TAIRPIALRAVTTIARALPGFPILAT 793 (1025)
T ss_dssp SCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEES-GGGHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCc-ccchhHHHHHHHHHHHHcCCCCEEEe
Confidence 478999999999999999993 44310 011111 112 47899999888 8999999
Q ss_pred CCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhh
Q 045794 361 GGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDY 404 (578)
Q Consensus 361 GGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~ 404 (578)
|||++.+| +.+++.+||+.|.+|+.++.+++.+
T Consensus 794 GGI~s~~d-----------a~~~l~~Ga~~v~vg~~~l~~~~~~ 826 (1025)
T 1gte_A 794 GGIDSAES-----------GLQFLHSGASVLQVCSAVQNQDFTV 826 (1025)
T ss_dssp SSCCSHHH-----------HHHHHHTTCSEEEESHHHHTSCTTH
T ss_pred cCcCCHHH-----------HHHHHHcCCCEEEEeeccccCCccH
Confidence 99999977 9999999999999999999744433
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0052 Score=65.10 Aligned_cols=167 Identities=12% Similarity=0.020 Sum_probs=107.8
Q ss_pred cccEEEeCCccccccCCCCccChHHHHHHHHHcCcceee-cchhhhc--cchhhhhccccCCchHHHHHHHhCCCCeEEE
Q 045794 354 FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKIS-IGSDAVY--AAEDYLKTGVKTGKSSLEQISRVYGNQAVVV 430 (578)
Q Consensus 354 ~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv-~gt~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~ 430 (578)
.+|+..-.|..+.++ -.+.++++.+.|...+= +|..... +.+..+ ....+.++.+.+.+|++ +-+
T Consensus 114 ~v~~y~~~~~~~~e~-------~~~~a~~~~~~G~~~iKl~G~~~~~~~~~~~~~----~~d~e~v~avR~avG~d-~~L 181 (405)
T 3rr1_A 114 KMRTYSWVGGDRPAD-------VIAGMKALQAGGFDHFKLNGCEEMGIIDTSRAV----DAAVARVAEIRSAFGNT-VEF 181 (405)
T ss_dssp CEEEEEECCCSSHHH-------HHHHHHHHHHTTCCEEEEESCCSSSCBCSHHHH----HHHHHHHHHHHHTTGGG-SEE
T ss_pred ceeeeEeCCCCCHHH-------HHHHHHHHHHcCCCEEEEecCCcccccccchhH----HHHHHHHHHHHHHhCCC-ceE
Confidence 466655556666554 24667788888866332 5542100 000000 00136788888999865 566
Q ss_pred EEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCC
Q 045794 431 SIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFD 510 (578)
Q Consensus 431 slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d 510 (578)
.+|+.. +|.. -+..++++.++++|+..|= .-....|
T Consensus 182 ~vDaN~----------------------------------~~~~---~~A~~~~~~L~~~~i~~iE-------eP~~~~d 217 (405)
T 3rr1_A 182 GLDFHG----------------------------------RVSA---PMAKVLIKELEPYRPLFIE-------EPVLAEQ 217 (405)
T ss_dssp EEECCS----------------------------------CBCH---HHHHHHHHHHGGGCCSCEE-------CSSCCSS
T ss_pred EEECCC----------------------------------CCCH---HHHHHHHHHHHhcCCCEEE-------CCCCccc
Confidence 788532 2322 1356788999999876551 1222348
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 511 MDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 511 ~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
++.++++++.+++||++.+.+.+.++++++++...++.+.+--....|-.....+.+.....|++|
T Consensus 218 ~~~~~~l~~~~~iPIa~dE~i~~~~~~~~~l~~~a~d~v~~d~~~~GGitea~kia~lA~~~gi~v 283 (405)
T 3rr1_A 218 AETYARLAAHTHLPIAAGERMFSRFDFKRVLEAGGVSILQPDLSHAGGITECVKIAAMAEAYDVAL 283 (405)
T ss_dssp THHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHCCCSEECCBTTTTTHHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHHHHhcCCCCEEecCCcCCHHHHHHHHHHhCCCeEEEChhhcCCHHHHHHHHHHHHHcCCEE
Confidence 899999999999999999999999999999975567776644333344444667777888888876
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0029 Score=66.38 Aligned_cols=140 Identities=19% Similarity=0.173 Sum_probs=102.4
Q ss_pred HHHHHHHHHcCccee--ecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKI--SIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~v--v~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|...+ =+|...-. ..+.++.+.+.+|++ +.+.+|+..
T Consensus 150 ~~~a~~~~~~G~~~iKiK~G~~~~~------------d~~~v~avR~a~g~~-~~l~vDan~------------------ 198 (378)
T 3eez_A 150 RAVIDRYRQRGYVAHSVKIGGDVER------------DIARIRDVEDIREPG-EIVLYDVNR------------------ 198 (378)
T ss_dssp HHHHHHHHHTTCCEEEEECCSCHHH------------HHHHHHHHTTSCCTT-CEEEEECTT------------------
T ss_pred HHHHHHHHhCCCCEEEeccCCCHHH------------HHHHHHHHHHHcCCC-ceEEEECCC------------------
Confidence 355677788887644 34541111 136788888889865 667788643
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|... +..++++.++++++ .| +.-.. |++.++++++.+++||++.+.+.+.
T Consensus 199 ----------------~~~~~---~a~~~~~~l~~~~i-~i-------EqP~~--~~~~~~~l~~~~~iPIa~dE~~~~~ 249 (378)
T 3eez_A 199 ----------------GWTRQ---QALRVMRATEDLHV-MF-------EQPGE--TLDDIAAIRPLHSAPVSVDECLVTL 249 (378)
T ss_dssp ----------------CCCHH---HHHHHHHHTGGGTC-CE-------ECCSS--SHHHHHHTGGGCCCCEEECTTCCSH
T ss_pred ----------------CCCHH---HHHHHHHHhccCCe-EE-------ecCCC--CHHHHHHHHhhCCCCEEECCCCCCH
Confidence 23221 35678888888876 33 11122 8999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+|++++++...++.+.+--....|.....++.+.+.+.|+++
T Consensus 250 ~~~~~~l~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~g~~~ 291 (378)
T 3eez_A 250 QDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALTHGIDM 291 (378)
T ss_dssp HHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHcCCEE
Confidence 999999976668888877777777777888889999999886
|
| >3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0031 Score=60.57 Aligned_cols=85 Identities=15% Similarity=0.268 Sum_probs=57.0
Q ss_pred cEEEEEECCCC---CHHHHHHHHHHC--CCeEEEeCCc------------------cCCCCCCEEEECCCCCchHHHHHH
Q 045794 48 SVVTLLDYGAG---NVRSVRNAIRHL--GFGIKDVQTP------------------EDILNANRLIFPGVGAFAAAMDVL 104 (578)
Q Consensus 48 ~~I~vld~~~g---~~~~i~~~L~~~--Gv~v~~v~~~------------------~dl~~~DGlILpGGg~~~~~~~~l 104 (578)
++|+|+=++-- -+....+.|+.+ ++++.++... ++...+|.||+|||.. .. ...
T Consensus 5 ~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~~~~D~livpGG~~--~~-~~~ 81 (211)
T 3mgk_A 5 YRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDENIEKILFVPGGSG--TR-EKV 81 (211)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCSSSEEEEEECCSTH--HH-HHT
T ss_pred eEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhCCCCCEEEECCCcc--hh-hhc
Confidence 45777755421 222355677766 4677766431 2234589999999852 11 111
Q ss_pred HhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 105 NKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 105 ~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
....+.++|+++.+.+++|.+||-|-.+|+.
T Consensus 82 ~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~ 112 (211)
T 3mgk_A 82 NDDNFINFIGNMVKESKYIISVCTGSALLSK 112 (211)
T ss_dssp TCHHHHHHHHHHHHHCSEEEECTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCEEEEEchHHHHHHh
Confidence 2235788999999999999999999999998
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0059 Score=62.98 Aligned_cols=78 Identities=27% Similarity=0.204 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCCeEEEEecccCC-CC---CCCCch--hHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 311 ELARQYYKEGADEISFLNITGFR-DF---PLGDLP--MLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~-~~---~~~~~~--~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
+.|+.+.+.|+|.|.+-.--+.. +. .....+ .+..+.++++.+++||...|||++.+| +.+++
T Consensus 161 e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~D-----------v~kal 229 (336)
T 1ypf_A 161 EAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGIRTNGD-----------VAKSI 229 (336)
T ss_dssp HHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCCCSTHH-----------HHHHH
T ss_pred HHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCCCCHHH-----------HHHHH
Confidence 78999999999988873211100 00 000012 588899999988999999999999987 89999
Q ss_pred HcCcceeecchhhhc
Q 045794 385 RSGADKISIGSDAVY 399 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~ 399 (578)
.+||+-|.+|+..+.
T Consensus 230 alGAdaV~iGr~~l~ 244 (336)
T 1ypf_A 230 RFGATMVMIGSLFAG 244 (336)
T ss_dssp HTTCSEEEESGGGTT
T ss_pred HcCCCEEEeChhhhc
Confidence 999999999998885
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0083 Score=59.90 Aligned_cols=100 Identities=15% Similarity=0.092 Sum_probs=76.6
Q ss_pred cccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHH
Q 045794 470 NGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAA 549 (578)
Q Consensus 470 ~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv 549 (578)
+|+.. .+.++.++++.+++.|+..|-+.+ -.+...| .++.++.+++.+++||+.-+.|.++.++.++.. .|||+|
T Consensus 72 kG~i~-~~~dp~~~A~~y~~~GA~~IsVlt--d~~~f~G-s~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~~-~GAD~V 146 (272)
T 3tsm_A 72 KGLIR-PDFDPPALAKAYEEGGAACLSVLT--DTPSFQG-APEFLTAARQACSLPALRKDFLFDPYQVYEARS-WGADCI 146 (272)
T ss_dssp TEESC-SSCCHHHHHHHHHHTTCSEEEEEC--CSTTTCC-CHHHHHHHHHTSSSCEEEESCCCSTHHHHHHHH-TTCSEE
T ss_pred CCccC-CCCCHHHHHHHHHHCCCCEEEEec--cccccCC-CHHHHHHHHHhcCCCEEECCccCCHHHHHHHHH-cCCCEE
Confidence 34433 367999999999999999986544 2233334 788889999999999999999999999999975 999999
Q ss_pred hhhhhhccCCCCHHHHHHHHHhCCCe
Q 045794 550 LAAGIFHRKEVPIQSVKEHLYKEGIE 575 (578)
Q Consensus 550 ~vgsa~~~~~~~~~~~~~~l~~~~i~ 575 (578)
+++.+... .-.+.++.++.++-|+.
T Consensus 147 lLi~a~L~-~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 147 LIIMASVD-DDLAKELEDTAFALGMD 171 (272)
T ss_dssp EEETTTSC-HHHHHHHHHHHHHTTCE
T ss_pred EEcccccC-HHHHHHHHHHHHHcCCe
Confidence 88876543 22356666667777765
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0073 Score=63.01 Aligned_cols=86 Identities=12% Similarity=0.105 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+.+++|+.+.+.|++.|++..-... ... ....+.++++++.+.+||...||| +.++ ++++++.|
T Consensus 252 ~~~~~a~~l~~~G~d~i~v~~~~~~-~~~---~~~~~~~~~v~~~~~iPvi~~Ggi-t~~~-----------a~~~l~~g 315 (364)
T 1vyr_A 252 DALYLIEELAKRGIAYLHMSETDLA-GGK---PYSEAFRQKVRERFHGVIIGAGAY-TAEK-----------AEDLIGKG 315 (364)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCBTT-BCC---CCCHHHHHHHHHHCCSEEEEESSC-CHHH-----------HHHHHHTT
T ss_pred HHHHHHHHHHHhCCCEEEEecCccc-CCC---cccHHHHHHHHHHCCCCEEEECCc-CHHH-----------HHHHHHCC
Confidence 4567899999999999998642211 111 124678899999999999999999 7755 99999998
Q ss_pred -cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 388 -ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 388 -a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
||-|.+|..++.+ |++++++.+
T Consensus 316 ~aD~V~~gR~~l~~------------P~~~~~~~~ 338 (364)
T 1vyr_A 316 LIDAVAFGRDYIAN------------PDLVARLQK 338 (364)
T ss_dssp SCSEEEESHHHHHC------------TTHHHHHHH
T ss_pred CccEEEECHHHHhC------------hhHHHHHHc
Confidence 9999999999985 466777765
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.006 Score=63.69 Aligned_cols=86 Identities=16% Similarity=0.076 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+.+++|+.+.+.|++.|++..-.. .+.. ....+.++++++.+++||...||| +.++ ++++++.|
T Consensus 251 ~~~~~a~~l~~~G~d~i~v~~~~~--~~~~--~~~~~~~~~i~~~~~iPvi~~Ggi-~~~~-----------a~~~l~~g 314 (365)
T 2gou_A 251 TYTAAAALLNKHRIVYLHIAEVDW--DDAP--DTPVSFKRALREAYQGVLIYAGRY-NAEK-----------AEQAINDG 314 (365)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCBT--TBCC--CCCHHHHHHHHHHCCSEEEEESSC-CHHH-----------HHHHHHTT
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCc--CCCC--CccHHHHHHHHHHCCCcEEEeCCC-CHHH-----------HHHHHHCC
Confidence 456789999999999999875321 1111 123578889999999999999999 7755 99999998
Q ss_pred -cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 388 -ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 388 -a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
||-|.+|+.++.+ |++++++.+
T Consensus 315 ~aD~V~igR~~i~~------------P~l~~~~~~ 337 (365)
T 2gou_A 315 LADMIGFGRPFIAN------------PDLPERLRH 337 (365)
T ss_dssp SCSEEECCHHHHHC------------TTHHHHHHH
T ss_pred CcceehhcHHHHhC------------chHHHHHHc
Confidence 9999999999985 466777765
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0028 Score=65.62 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHcCCCeEEEE----------ecccCC---------CCCCC---CchhHHHHHHHhhhc--cccEEEeCCc
Q 045794 308 KPVELARQYYKEGADEISFL----------NITGFR---------DFPLG---DLPMLQVLRLTSENV--FVPLTVGGGI 363 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~----------Dl~~~~---------~~~~~---~~~~~~~i~~i~~~~--~~pi~~gGGi 363 (578)
+..++++...+.|++.|-++ |++.-. ++..+ ....++.|+++++.+ .+||...|||
T Consensus 205 ~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ipIIg~GGI 284 (345)
T 3oix_A 205 DIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGV 284 (345)
T ss_dssp CHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSEEEEESSC
T ss_pred CHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCcEEEECCC
Confidence 78899999999888776443 343210 00000 112368899999988 6999999999
Q ss_pred cccccCCCCccChHHHHHHHHHcCcceeecchh-hhccchhhh
Q 045794 364 RDFTDANGRHYSSLEVASEYFRSGADKISIGSD-AVYAAEDYL 405 (578)
Q Consensus 364 r~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~-~~~~~~~~~ 405 (578)
++.+| +.+++.+||+-|.+||. .+.+ |.++
T Consensus 285 ~s~~d-----------a~~~l~aGAd~V~igra~~~~g-P~~~ 315 (345)
T 3oix_A 285 XTGRD-----------AFEHILCGASMVQIGTALHQEG-PQIF 315 (345)
T ss_dssp CSHHH-----------HHHHHHHTCSEEEESHHHHHHC-THHH
T ss_pred CChHH-----------HHHHHHhCCCEEEEChHHHhcC-hHHH
Confidence 99977 89999999999999999 5553 4443
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0069 Score=63.61 Aligned_cols=160 Identities=11% Similarity=0.059 Sum_probs=108.1
Q ss_pred cccEEEeCCccccccCCCCccChHHHHHHHHHc-Ccc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEE
Q 045794 354 FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS-GAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVV 430 (578)
Q Consensus 354 ~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~-Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~ 430 (578)
.+|+...+|+.+.++ -.+.++++++. |.. |+=+|......+ .+.++.+.+.+|++ +.+
T Consensus 156 ~v~~y~s~g~~~~e~-------~~~~a~~~~~~~G~~~~KlKvG~~~~~~d-----------~~~v~avR~a~G~~-~~l 216 (383)
T 3toy_A 156 PIPAYDSYGVLDARD-------DERTLRTACDEHGFRAIKSKGGHGDLATD-----------EAMIKGLRALLGPD-IAL 216 (383)
T ss_dssp CEEEEEECSSCCHHH-------HHHHHHHHHHTSCCCEEEEECCSSCHHHH-----------HHHHHHHHHHHCTT-SEE
T ss_pred ceEEeEecCCCCHHH-------HHHHHHHHHHccCCcEEEEecCCCCHHHH-----------HHHHHHHHHHhCCC-CeE
Confidence 467766577766554 24667888888 866 444564322221 36788888989865 567
Q ss_pred EEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCC
Q 045794 431 SIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFD 510 (578)
Q Consensus 431 slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d 510 (578)
.+|+.. +|.. -+..++++.++++++..| +.=...-|
T Consensus 217 ~vDaN~----------------------------------~~~~---~~A~~~~~~l~~~~i~~i-------EeP~~~~d 252 (383)
T 3toy_A 217 MLDFNQ----------------------------------SLDP---AEATRRIARLADYDLTWI-------EEPVPQEN 252 (383)
T ss_dssp EEECTT----------------------------------CSCH---HHHHHHHHHHGGGCCSEE-------ECCSCTTC
T ss_pred EEeCCC----------------------------------CCCH---HHHHHHHHHHHhhCCCEE-------ECCCCcch
Confidence 788543 2322 135688999999987654 12222338
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 511 MDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 511 ~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
++.++++++.+++||.+...+.+..|++++++...++.+.+--.-..|-....++.+.++..|++|
T Consensus 253 ~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~ 318 (383)
T 3toy_A 253 LSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPM 318 (383)
T ss_dssp HHHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTTTHHHHHHHHHHHHHHHTCCB
T ss_pred HHHHHHHHhhcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEE
Confidence 999999999999999999999999999999974456666543333334334556777777888876
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0037 Score=59.01 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
+....+.+.+...+.+=+. .|+-.+.++++++.+++|||++|+|++.||+.++++ .||++|..++..
T Consensus 116 l~~~~~~i~~~~PD~iEiL--------PGi~p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~-aGA~aVsTs~~~ 182 (192)
T 3kts_A 116 YNKGVALIQKVQPDCIELL--------PGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIA-SGAIAVTTSNKH 182 (192)
T ss_dssp HHHHHHHHHHHCCSEEEEE--------CTTCHHHHHHHHHHHCCCEEEESSCCSHHHHHHHHT-TTEEEEEECCGG
T ss_pred HHHHHHHHhhcCCCEEEEC--------CchhHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHH-cCCeEEEeCCHH
Confidence 3456666777777766333 566678999999999999999999999999999995 999999877643
|
| >3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0019 Score=61.71 Aligned_cols=49 Identities=12% Similarity=0.056 Sum_probs=39.5
Q ss_pred CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 83 ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 83 l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
..++|.||+|||...... . ..+.++|+++.+.+++|.+||.|-.+|+.+
T Consensus 69 ~~~~D~livpGG~~~~~~----~-~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLK----Y-PELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp GTTCSEEEEECCTTCCSC----C-TTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred CCCCCEEEEeCCCchhhc----c-HHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 467999999998533221 1 367889999999999999999999999984
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.012 Score=56.69 Aligned_cols=80 Identities=21% Similarity=0.133 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
++.+ ++...+.|+|.|.+=-.-............++.++++.+.+.+|+.+.||| +.++ +.+++++|
T Consensus 119 t~~~-~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~n-----------v~~~~~~G 185 (221)
T 1yad_A 119 SLEE-AVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDR-----------LRDVKQAG 185 (221)
T ss_dssp SHHH-HHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGG-----------HHHHHHTT
T ss_pred CHHH-HHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHH-----------HHHHHHcC
Confidence 5555 566668899987662221110000001345788999988789999999999 7776 99999999
Q ss_pred cceeecchhhhcc
Q 045794 388 ADKISIGSDAVYA 400 (578)
Q Consensus 388 a~~vv~gt~~~~~ 400 (578)
|+.|++||..+..
T Consensus 186 a~gv~vgs~i~~~ 198 (221)
T 1yad_A 186 ADGIAVMSGIFSS 198 (221)
T ss_dssp CSEEEESHHHHTS
T ss_pred CCEEEEhHHhhCC
Confidence 9999999998864
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0063 Score=63.38 Aligned_cols=77 Identities=25% Similarity=0.307 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCC-------CCCchhHHHHHHHh---hhccccEEEeCCccccccCCCCccChHHH
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFP-------LGDLPMLQVLRLTS---ENVFVPLTVGGGIRDFTDANGRHYSSLEV 379 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~-------~~~~~~~~~i~~i~---~~~~~pi~~gGGir~~~d~~~~~~~~~~~ 379 (578)
.+.|+.+.+.|+|.|.+ =... +.. .-..+++..+.+++ +.+++||+.+|||++.+|
T Consensus 156 ~e~A~~l~~aGaD~I~V-G~~~--Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~d----------- 221 (361)
T 3khj_A 156 EEATKELIENGADGIKV-GIGP--GSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGD----------- 221 (361)
T ss_dssp HHHHHHHHHTTCSEEEE-CSSC--CTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHH-----------
T ss_pred HHHHHHHHHcCcCEEEE-ecCC--CcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHH-----------
Confidence 36788899999998886 1110 000 00134566777764 446899999999999876
Q ss_pred HHHHHHcCcceeecchhhhcc
Q 045794 380 ASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 380 ~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+.+++.+||+.|.+||..+..
T Consensus 222 i~kala~GAd~V~vGs~~~~t 242 (361)
T 3khj_A 222 IGKALAVGASSVMIGSILAGT 242 (361)
T ss_dssp HHHHHHHTCSEEEESTTTTTB
T ss_pred HHHHHHcCCCEEEEChhhhcC
Confidence 999999999999999988874
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0097 Score=62.33 Aligned_cols=147 Identities=16% Similarity=0.120 Sum_probs=102.3
Q ss_pred HHHHHHHHHcCcceeec--chhh---hccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceee
Q 045794 377 LEVASEYFRSGADKISI--GSDA---VYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVR 451 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~--gt~~---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~ 451 (578)
.+.++++.+.|.+.+=+ |... ..+ .++ ..+.++.+.+.+|++ +.+.+|+..
T Consensus 154 ~~~a~~~~~~Gf~~iKik~g~~~~~~~~~-~~~-------~~e~v~avr~a~g~d-~~l~vDan~--------------- 209 (382)
T 1rvk_A 154 GRFAETLVKRGYKGIKLHTWMPPVSWAPD-VKM-------DLKACAAVREAVGPD-IRLMIDAFH--------------- 209 (382)
T ss_dssp HHHHHHHHHHTCSEEEEECCCTTSTTCCC-HHH-------HHHHHHHHHHHHCTT-SEEEEECCT---------------
T ss_pred HHHHHHHHHCCCCEEEEcCCcCccccccc-hHH-------HHHHHHHHHHHhCCC-CeEEEECCC---------------
Confidence 45677777888775544 3210 001 111 137788888889865 566688643
Q ss_pred eccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCC
Q 045794 452 VTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGA 531 (578)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi 531 (578)
+|.. -+..++++.++++|+..| +.-..-.|++.++++++.+++||++.+.+
T Consensus 210 -------------------~~~~---~~a~~~~~~l~~~~i~~i-------E~P~~~~~~~~~~~l~~~~~iPIa~dE~~ 260 (382)
T 1rvk_A 210 -------------------WYSR---TDALALGRGLEKLGFDWI-------EEPMDEQSLSSYKWLSDNLDIPVVGPESA 260 (382)
T ss_dssp -------------------TCCH---HHHHHHHHHHHTTTCSEE-------ECCSCTTCHHHHHHHHHHCSSCEEECSSC
T ss_pred -------------------CCCH---HHHHHHHHHHHhcCCCEE-------eCCCChhhHHHHHHHHhhCCCCEEEeCCc
Confidence 2321 135788999999998754 12223348999999999999999999999
Q ss_pred CC-HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 532 GA-VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 532 ~s-~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.+ .++++++++...++.+.+--.-..|-....++.+..++.|++|
T Consensus 261 ~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~ 306 (382)
T 1rvk_A 261 AGKHWHRAEWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGMEC 306 (382)
T ss_dssp SSHHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCE
T ss_pred cCcHHHHHHHHHcCCCCEEeeCchhcCCHHHHHHHHHHHHHcCCeE
Confidence 99 9999999986668888765555556555677888888888876
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0046 Score=63.96 Aligned_cols=82 Identities=15% Similarity=0.022 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCC-CCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDF-PLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~-~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++|+.+.+. ++.|++..=...... ....+.+++.++++++.+++||...|||++.++ ++++++
T Consensus 230 ~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~-----------Ae~~l~ 297 (343)
T 3kru_A 230 DMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLITTQEL-----------AEEILS 297 (343)
T ss_dssp HHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEEESSCCCHHH-----------HHHHHH
T ss_pred HHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhcCcccceeeeeeHHHH-----------HHHHHh
Confidence 4678899999999 998887521110000 012234688899999989999999999999866 999999
Q ss_pred cC-cceeecchhhhcc
Q 045794 386 SG-ADKISIGSDAVYA 400 (578)
Q Consensus 386 ~G-a~~vv~gt~~~~~ 400 (578)
.| ||-|.+|..++.|
T Consensus 298 ~G~aD~V~iGR~~lan 313 (343)
T 3kru_A 298 NERADLVALGRELLRN 313 (343)
T ss_dssp TTSCSEEEESHHHHHC
T ss_pred chhhHHHHHHHHHhcC
Confidence 98 9999999999985
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0026 Score=62.30 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-----cccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-----FVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-----~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+|++.++.+.+ ++|.|.+.-.+.-.++.......++-|+++++.. .+||+++|||+. +++.
T Consensus 136 ~Tp~~~l~~~l~-~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~~------------~~~~ 202 (237)
T 3cu2_A 136 ETPISELEPYLD-QIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMTL------------ELAK 202 (237)
T ss_dssp TSCGGGGTTTTT-TCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCCH------------HHHH
T ss_pred CChHHHHHHHhh-cCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcCH------------HHHH
Confidence 355666655543 6998888666643333222234466667776655 589999999997 4599
Q ss_pred HHHH--cCcceeecchhhhcc
Q 045794 382 EYFR--SGADKISIGSDAVYA 400 (578)
Q Consensus 382 ~~l~--~Ga~~vv~gt~~~~~ 400 (578)
++.+ +|||.+|+||+.+..
T Consensus 203 ~~~~~~aGad~~VvGSaIf~~ 223 (237)
T 3cu2_A 203 YFKQGTHQIDWLVSGSALFSG 223 (237)
T ss_dssp HHHHSSSCCCCEEECGGGGSS
T ss_pred HHHHhCCCCcEEEEeeHHhCC
Confidence 9999 999999999998873
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.012 Score=60.14 Aligned_cols=156 Identities=20% Similarity=0.239 Sum_probs=99.2
Q ss_pred cCCHHHHHHHHH-HcCCCeEEEEecccCCCCCC----CCchhHHHHHHHhhhccccEEEeC-CccccccCCCCccChHHH
Q 045794 306 LGKPVELARQYY-KEGADEISFLNITGFRDFPL----GDLPMLQVLRLTSENVFVPLTVGG-GIRDFTDANGRHYSSLEV 379 (578)
Q Consensus 306 ~~~p~~~a~~~~-~~g~~~i~~~Dl~~~~~~~~----~~~~~~~~i~~i~~~~~~pi~~gG-Gir~~~d~~~~~~~~~~~ 379 (578)
..+|.++|+... +.||+ ++|+.+....+. ......++++++.+.+++||.++| |-.| ...+.
T Consensus 79 ~~~~~~~A~~~v~~~GAd---iIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~~vPlsIDg~~~~T---------~~~eV 146 (323)
T 4djd_D 79 INEPGRWAQKCVAEYGAD---LIYLKLDGADPEGANHSVDQCVATVKEVLQAVGVPLVVVGCGDVE---------KDHEV 146 (323)
T ss_dssp TTCHHHHHHHHHHTTCCS---EEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCCSCEEEECCSCHH---------HHHHH
T ss_pred HHhHHHHHHHHHHHcCCC---EEEEcCccCCCCCCCCCHHHHHHHHHHHHhhCCceEEEECCCCCC---------CCHHH
Confidence 358999999998 88998 567754211111 112456778888888899999973 3333 34689
Q ss_pred HHHHHHcCcc-eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCC
Q 045794 380 ASEYFRSGAD-KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPN 458 (578)
Q Consensus 380 ~~~~l~~Ga~-~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (578)
+++.+++|++ +.+|++....+. +-+-.++.+||. .+++ +- |.
T Consensus 147 ~eaAleagag~~~lINsv~~~~~------------~~m~~laa~~g~-~vVl-mh--------~~--------------- 189 (323)
T 4djd_D 147 LEAVAEAAAGENLLLGNAEQENY------------KSLTAACMVHKH-NIIA-RS--------PL--------------- 189 (323)
T ss_dssp HHHHHHHTTTSCCEEEEEBTTBC------------HHHHHHHHHHTC-EEEE-EC--------SS---------------
T ss_pred HHHHHHhcCCCCCeEEECCcccH------------HHHHHHHHHhCC-eEEE-Ec--------cc---------------
Confidence 9999999998 567877655431 223456788974 3333 21 10
Q ss_pred CCCcceEEEEEcccccCCCC-CHHHHHHHHHHcCC--cEEEEeccCC-CCCCCCCCHHHHHHHHh-------hCCCcEEE
Q 045794 459 GEEYAWYQCTVNGGREGRPI-GAYELAKAVEDLGA--GEILLNCIDC-DGQGKGFDMDLIKLISD-------AVSIPVIA 527 (578)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~-~~~e~~~~~~~~G~--~~ii~tdi~~-dG~~~G~d~~li~~l~~-------~~~ipVIa 527 (578)
++ -+.+..+.+.++|+ +.|++=...- -|+....+++++++++. .+..|+++
T Consensus 190 ------------------d~~~~~~l~~~a~~~GI~~e~IIlDPg~g~fgk~~e~~l~~l~~ir~~al~~~~~lg~PvL~ 251 (323)
T 4djd_D 190 ------------------DINICKQLNILINEMNLPLDHIVIDPSIGGLGYGIEYSFSIMERIRLGALQGDKMLSMPVIC 251 (323)
T ss_dssp ------------------CHHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHHHHHHTCGGGCSCBEE
T ss_pred ------------------hHHHHHHHHHHHHHcCCCHHHEEEeCCCccccCCHHHHHHHHHHHHHHhhcccccCCCCEEE
Confidence 11 13456678889998 6677433221 23333347788888865 46899998
Q ss_pred e
Q 045794 528 S 528 (578)
Q Consensus 528 s 528 (578)
+
T Consensus 252 G 252 (323)
T 4djd_D 252 T 252 (323)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0063 Score=63.05 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCCeEEEEecccC--------CCC------CCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCcc
Q 045794 310 VELARQYYKEGADEISFLNITGF--------RDF------PLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHY 374 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~--------~~~------~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~ 374 (578)
.+.|+.+.+.|++.|.+..-.+. +.. .....+..+.|+++.+.+ .+||.+.|||++.+|
T Consensus 192 ~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d------ 265 (349)
T 1p0k_A 192 KASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALD------ 265 (349)
T ss_dssp HHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHH------
T ss_pred HHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHH------
Confidence 47789999999999988642211 100 011235677888888876 899999999999977
Q ss_pred ChHHHHHHHHHcCcceeecchhhhcc
Q 045794 375 SSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 375 ~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+.+++.+||+-|.+|+..+..
T Consensus 266 -----~~k~l~~GAd~V~iG~~~l~~ 286 (349)
T 1p0k_A 266 -----VAKAIALGASCTGMAGHFLKA 286 (349)
T ss_dssp -----HHHHHHTTCSEEEECHHHHHH
T ss_pred -----HHHHHHcCCCEEEEcHHHHHH
Confidence 999999999999999988874
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0064 Score=62.93 Aligned_cols=76 Identities=24% Similarity=0.215 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
+.|+...+.|+|.|.+-.-.+.. .......++.+.++.+.+ .+||.+.|||++-+| +.+.+.+||
T Consensus 229 e~A~~a~~~GaD~I~vsn~GG~~--~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~D-----------v~kaLalGA 295 (352)
T 3sgz_A 229 EDAELAMKHNVQGIVVSNHGGRQ--LDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTD-----------VLKALALGA 295 (352)
T ss_dssp HHHHHHHHTTCSEEEECCGGGTS--SCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHH-----------HHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEEeCCCCCc--cCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHH-----------HHHHHHcCC
Confidence 77899999999988876544321 112356789999998877 799999999999977 889999999
Q ss_pred ceeecchhhhc
Q 045794 389 DKISIGSDAVY 399 (578)
Q Consensus 389 ~~vv~gt~~~~ 399 (578)
+-|.+|+..+.
T Consensus 296 ~aV~iGr~~l~ 306 (352)
T 3sgz_A 296 RCIFLGRPILW 306 (352)
T ss_dssp SEEEESHHHHH
T ss_pred CEEEECHHHHH
Confidence 99999998775
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.015 Score=61.29 Aligned_cols=144 Identities=11% Similarity=0.011 Sum_probs=102.7
Q ss_pred HHHHHHHHHcCcceee-----cchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceee
Q 045794 377 LEVASEYFRSGADKIS-----IGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVR 451 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv-----~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~ 451 (578)
.+.++++.+.|.+.+= +|.. +. ++ ..+.++.+.+.+|++ +.+.+|+..
T Consensus 150 ~~~a~~~~~~Gf~~iKik~spvG~~-~~---~~-------~~e~v~avr~a~G~d-~~l~vDan~--------------- 202 (401)
T 2hzg_A 150 LERARAARRDGFAAVKFGWGPIGRG-TV---AA-------DADQIMAAREGLGPD-GDLMVDVGQ--------------- 202 (401)
T ss_dssp HHHHHHHHHTTCSEEEEESTTTTSS-CH---HH-------HHHHHHHHHHHHCSS-SEEEEECTT---------------
T ss_pred HHHHHHHHHhCCCeEEEcCCCCCCC-HH---HH-------HHHHHHHHHHHhCCC-CeEEEECCC---------------
Confidence 4567788888877654 3321 10 11 137788888889865 667788642
Q ss_pred eccCCCCCCCcceEEEEEccc--ccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHh-hCCCcEEEe
Q 045794 452 VTDLGPNGEEYAWYQCTVNGG--REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISD-AVSIPVIAS 528 (578)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~-~~~ipVIas 528 (578)
+| .. -+..++++.++++|+..| +.-....|++.++++++ .+++||++.
T Consensus 203 -------------------~~~~~~---~~a~~~~~~l~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~~iPI~~d 253 (401)
T 2hzg_A 203 -------------------IFGEDV---EAAAARLPTLDAAGVLWL-------EEPFDAGALAAHAALAGRGARVRIAGG 253 (401)
T ss_dssp -------------------TTTTCH---HHHHTTHHHHHHTTCSEE-------ECCSCTTCHHHHHHHHTTCCSSEEEEC
T ss_pred -------------------CCCCCH---HHHHHHHHHHHhcCCCEE-------ECCCCccCHHHHHHHHhhCCCCCEEec
Confidence 23 21 135678899999998754 12223358999999999 899999999
Q ss_pred cCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 529 SGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 529 GGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+.+.+.++++++++...++.+.+--.-..|.....++.+.+++.|+++
T Consensus 254 E~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~ 301 (401)
T 2hzg_A 254 EAAHNFHMAQHLMDYGRIGFIQIDCGRIGGLGPAKRVADAAQARGITY 301 (401)
T ss_dssp TTCSSHHHHHHHHHHSCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEE
T ss_pred CCcCCHHHHHHHHHCCCCCEEEeCcchhCCHHHHHHHHHHHHHcCCEE
Confidence 999999999999986678888866555556555667888888888875
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.011 Score=62.12 Aligned_cols=144 Identities=13% Similarity=0.150 Sum_probs=101.2
Q ss_pred HHHHHHHHHc-Ccce--eecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeec
Q 045794 377 LEVASEYFRS-GADK--ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVT 453 (578)
Q Consensus 377 ~~~~~~~l~~-Ga~~--vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~ 453 (578)
.+.++++++. |... +=+|...... ..+.++.+.+.+|++ +.+.+|+..
T Consensus 153 ~~~a~~~~~~~G~~~~K~Kvg~~~~~~-----------d~~~v~avR~a~g~~-~~l~vDan~----------------- 203 (383)
T 3i4k_A 153 VAEIEERIEEFGNRSFKLKMGAGDPAE-----------DTRRVAELAREVGDR-VSLRIDINA----------------- 203 (383)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSSCHHH-----------HHHHHHHHHHTTTTT-SEEEEECTT-----------------
T ss_pred HHHHHHHHHhcCCcEEEEeeCCCCHHH-----------HHHHHHHHHHHcCCC-CEEEEECCC-----------------
Confidence 3556777776 8654 4456422221 137788998999864 667788543
Q ss_pred cCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCC
Q 045794 454 DLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533 (578)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s 533 (578)
+|.. -+..+++++++++|+..|= .-....|++.++++++.+++||.+.+.+.+
T Consensus 204 -----------------~~~~---~~A~~~~~~l~~~~i~~iE-------qP~~~~d~~~~~~l~~~~~iPIa~dE~~~~ 256 (383)
T 3i4k_A 204 -----------------RWDR---RTALHYLPILAEAGVELFE-------QPTPADDLETLREITRRTNVSVMADESVWT 256 (383)
T ss_dssp -----------------CSCH---HHHHHHHHHHHHTTCCEEE-------SCSCTTCHHHHHHHHHHHCCEEEESTTCSS
T ss_pred -----------------CCCH---HHHHHHHHHHHhcCCCEEE-------CCCChhhHHHHHHHHhhCCCCEEecCccCC
Confidence 2322 1357789999999976551 222334899999999999999999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.+|++++++...++.+.+--.-..|-....++.+.+...|++|
T Consensus 257 ~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~ 299 (383)
T 3i4k_A 257 PAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGLAC 299 (383)
T ss_dssp HHHHHHHHHHTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeE
Confidence 9999999975557877755444555555667777888888876
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.015 Score=55.58 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=57.7
Q ss_pred CcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc--cCCCCHHHHHHHH
Q 045794 492 AGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH--RKEVPIQSVKEHL 569 (578)
Q Consensus 492 ~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~--~~~~~~~~~~~~l 569 (578)
++.++ .|-...|+.+-+||++++.+. ....|++.+||+ +++.+.++. ..+++||=+.|.+- .|.-+...+++++
T Consensus 118 ~d~~L-lD~~~gGtG~~fdW~~l~~~~-~~~~p~~LAGGL-~peNV~~ai-~~~p~gVDvsSGvE~~pG~KD~~ki~~fi 193 (203)
T 1v5x_A 118 AQALL-LDGKRPGSGEAYPRAWAKPLL-ATGRRVILAGGI-APENLEEVL-ALRPYALDLASGVEEAPGVKSAEKLRALF 193 (203)
T ss_dssp CSEEE-EECSSTTSCCCCCGGGGHHHH-HTTSCEEECSSC-CSTTHHHHH-HHCCSEEEESGGGEEETTEECHHHHHHHH
T ss_pred CCEEE-EcCCCCCCCCccCHHHHHhhh-ccCCcEEEECCC-CHHHHHHHH-hcCCCEEEeCCceecCCCCcCHHHHHHHH
Confidence 66666 443336788889999988732 246799999999 778998877 58999999999986 3666777777776
Q ss_pred Hh
Q 045794 570 YK 571 (578)
Q Consensus 570 ~~ 571 (578)
+.
T Consensus 194 ~~ 195 (203)
T 1v5x_A 194 AR 195 (203)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.013 Score=58.91 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
.+-++++.+.|++.|.+-.++ .+.+++..+.+ .+|+.++||| +++.+.++.+ +|+|++.+|+++|.-
T Consensus 206 ~eea~eA~~aGaD~I~ld~~~---------~~~~k~av~~v~~~ipi~AsGGI-t~eni~~~a~-tGvD~IsVgs~~~~a 274 (286)
T 1x1o_A 206 LEELEEALEAGADLILLDNFP---------LEALREAVRRVGGRVPLEASGNM-TLERAKAAAE-AGVDYVSVGALTHSA 274 (286)
T ss_dssp HHHHHHHHHHTCSEEEEESCC---------HHHHHHHHHHHTTSSCEEEESSC-CHHHHHHHHH-HTCSEEECTHHHHSC
T ss_pred HHHHHHHHHcCCCEEEECCCC---------HHHHHHHHHHhCCCCeEEEEcCC-CHHHHHHHHH-cCCCEEEEcHHHcCC
Confidence 455677778899988877753 34455554444 6899999999 6899999985 999999999998874
Q ss_pred C
Q 045794 559 E 559 (578)
Q Consensus 559 ~ 559 (578)
+
T Consensus 275 ~ 275 (286)
T 1x1o_A 275 K 275 (286)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0043 Score=65.15 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcce
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~ 390 (578)
+.|+.+.+.|++.|.+-.--+.. .....++++.+.++.+.++.||++.|||++.+| +.+++.+||+-
T Consensus 237 e~a~~a~~aGad~I~vs~~gg~~--~d~~~~~~~~l~~v~~~~~~pVia~GGI~~~~d-----------v~kal~~GAda 303 (380)
T 1p4c_A 237 EDADRCIAEGADGVILSNHGGRQ--LDCAISPMEVLAQSVAKTGKPVLIDSGFRRGSD-----------IVKALALGAEA 303 (380)
T ss_dssp HHHHHHHHTTCSEEEECCGGGTS--CTTCCCGGGTHHHHHHHHCSCEEECSSCCSHHH-----------HHHHHHTTCSC
T ss_pred HHHHHHHHcCCCEEEEcCCCCCc--CCCCcCHHHHHHHHHHHcCCeEEEECCCCCHHH-----------HHHHHHhCCcH
Confidence 67899999999998884432211 011245688899999888889999999999977 99999999999
Q ss_pred eecchhhhc
Q 045794 391 ISIGSDAVY 399 (578)
Q Consensus 391 vv~gt~~~~ 399 (578)
|.+|+..+.
T Consensus 304 V~iGr~~l~ 312 (380)
T 1p4c_A 304 VLLGRATLY 312 (380)
T ss_dssp EEESHHHHH
T ss_pred hhehHHHHH
Confidence 999998875
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0056 Score=64.18 Aligned_cols=87 Identities=14% Similarity=0.042 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+.+++|+.+.+.|++.|++..=... .... ..+.+.++++++.+++||.+.||| +.++ ++++++.|
T Consensus 256 ~~~~la~~le~~Gvd~i~v~~~~~~-~~~~--~~~~~~~~~ik~~~~iPvi~~Ggi-~~~~-----------a~~~l~~g 320 (377)
T 2r14_A 256 MAFYLAGELDRRGLAYLHFNEPDWI-GGDI--TYPEGFREQMRQRFKGGLIYCGNY-DAGR-----------AQARLDDN 320 (377)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCC---------CCCTTHHHHHHHHCCSEEEEESSC-CHHH-----------HHHHHHTT
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccc-CCCC--cchHHHHHHHHHHCCCCEEEECCC-CHHH-----------HHHHHHCC
Confidence 5678899999999999998542110 0111 114677888988899999999999 5655 99999998
Q ss_pred -cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 388 -ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 388 -a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
||-|.+|..++.+ |++++++.+
T Consensus 321 ~aD~V~igR~~l~~------------P~l~~k~~~ 343 (377)
T 2r14_A 321 TADAVAFGRPFIAN------------PDLPERFRL 343 (377)
T ss_dssp SCSEEEESHHHHHC------------TTHHHHHHH
T ss_pred CceEEeecHHHHhC------------chHHHHHHc
Confidence 9999999999985 466777765
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.009 Score=62.27 Aligned_cols=143 Identities=15% Similarity=0.229 Sum_probs=102.8
Q ss_pred HHHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|.+.+=+ |.. .++ ..+.++.+.+.+|++ +-+.+|+..
T Consensus 146 ~~~a~~~~~~Gf~~iKik~g~~-----~~~-------~~e~v~avr~a~g~~-~~l~vDan~------------------ 194 (369)
T 2p8b_A 146 AEEAASMIQKGYQSFKMKVGTN-----VKE-------DVKRIEAVRERVGND-IAIRVDVNQ------------------ 194 (369)
T ss_dssp HHHHHHHHHTTCCEEEEECCSC-----HHH-------HHHHHHHHHHHHCTT-SEEEEECTT------------------
T ss_pred HHHHHHHHHcCcCEEEEEeCCC-----HHH-------HHHHHHHHHHHhCCC-CeEEEECCC------------------
Confidence 35677788888775544 421 111 137788888889865 556788643
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHH-HHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCC
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAY-ELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s 533 (578)
+|.. -+.. ++++.++++|+..| +.-....|++.++++++.+++||++.+.+.+
T Consensus 195 ----------------~~~~---~~a~~~~~~~l~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~iPI~~dE~~~~ 248 (369)
T 2p8b_A 195 ----------------GWKN---SANTLTALRSLGHLNIDWI-------EQPVIADDIDAMAHIRSKTDLPLMIDEGLKS 248 (369)
T ss_dssp ----------------TTBS---HHHHHHHHHTSTTSCCSCE-------ECCBCTTCHHHHHHHHHTCCSCEEESTTCCS
T ss_pred ----------------CCCH---HHHHHHHHHHHHhCCCcEE-------ECCCCcccHHHHHHHHHhCCCCEEeCCCCCC
Confidence 2321 1356 78888888888754 1223335899999999999999999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.++++++++...++.+.+--.-..|.....++.+.+++.|+++
T Consensus 249 ~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~ 291 (369)
T 2p8b_A 249 SREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIEC 291 (369)
T ss_dssp HHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhCCCCEEEeecchhCCHHHHHHHHHHHHHcCCcE
Confidence 9999999986678888766655566656778888888999876
|
| >1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0044 Score=60.37 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=38.5
Q ss_pred CCCCEEEECCCCCchHHHHH-------H-HhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 84 LNANRLIFPGVGAFAAAMDV-------L-NKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 84 ~~~DGlILpGGg~~~~~~~~-------l-~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.+||+||+|||......+.. + ....+.++|+++.++++||.+||.|-++|+.+
T Consensus 89 ~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 149 (232)
T 1vhq_A 89 AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKI 149 (232)
T ss_dssp GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHH
T ss_pred ccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHH
Confidence 46999999998522110100 0 02256789999999999999999999999984
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0075 Score=62.61 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCcce--eecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADK--ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~--vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++++.|... +=+|...-. ..+.++.+.+.+|++ +.+.+|+..
T Consensus 144 ~~~a~~~~~~G~~~~K~K~g~~~~~------------d~~~v~avR~a~g~~-~~l~vDan~------------------ 192 (354)
T 3jva_A 144 AQKAVEKVKLGFDTLKIKVGTGIEA------------DIARVKAIREAVGFD-IKLRLDANQ------------------ 192 (354)
T ss_dssp HHHHHHHHHTTCSEEEEECCSCHHH------------HHHHHHHHHHHHCTT-SEEEEECTT------------------
T ss_pred HHHHHHHHHhCCCeEEEEeCCCHHH------------HHHHHHHHHHHcCCC-CeEEEECCC------------------
Confidence 45677788888664 444543211 137788888889865 667788543
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|.. -+..+++++++++++..| . .-....|++.++++++.+++||.+.+.+.+.
T Consensus 193 ----------------~~~~---~~a~~~~~~L~~~~i~~i---E----qP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~ 246 (354)
T 3jva_A 193 ----------------AWTP---KDAVKAIQALADYQIELV---E----QPVKRRDLEGLKYVTSQVNTTIMADESCFDA 246 (354)
T ss_dssp ----------------CSCH---HHHHHHHHHTTTSCEEEE---E----CCSCTTCHHHHHHHHHHCSSEEEESTTCCSH
T ss_pred ----------------CCCH---HHHHHHHHHHHhcCCCEE---E----CCCChhhHHHHHHHHHhCCCCEEEcCCcCCH
Confidence 2321 135677788877765433 1 1122238999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+|++++++...++.+.+--.-..|.....++.+..+..|+++
T Consensus 247 ~~~~~~l~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~ 288 (354)
T 3jva_A 247 QDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIEC 288 (354)
T ss_dssp HHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCeE
Confidence 999999875667877765555556555677888888888876
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0047 Score=62.07 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-----SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-----~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
++-++++.+.|++.|.+-.. +.+.++++.+.+ .+|+.++||| +++.+.++.+ +|+|++.+|++.
T Consensus 203 leea~eA~~aGaD~I~LDn~---------~~e~l~~av~~l~~~~~~v~ieASGGI-t~eni~~~a~-tGVD~IsvGslt 271 (285)
T 1o4u_A 203 LEDALRAVEAGADIVMLDNL---------SPEEVKDISRRIKDINPNVIVEVSGGI-TEENVSLYDF-ETVDVISSSRLT 271 (285)
T ss_dssp HHHHHHHHHTTCSEEEEESC---------CHHHHHHHHHHHHHHCTTSEEEEEECC-CTTTGGGGCC-TTCCEEEEGGGT
T ss_pred HHHHHHHHHcCCCEEEECCC---------CHHHHHHHHHHhhccCCCceEEEECCC-CHHHHHHHHH-cCCCEEEEeHHH
Confidence 46777788899998877663 445565555443 6899999999 7799999974 999999999998
Q ss_pred ccCC
Q 045794 556 HRKE 559 (578)
Q Consensus 556 ~~~~ 559 (578)
|+-+
T Consensus 272 ~sa~ 275 (285)
T 1o4u_A 272 LQEV 275 (285)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8654
|
| >1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0027 Score=61.31 Aligned_cols=73 Identities=14% Similarity=0.221 Sum_probs=52.6
Q ss_pred HHHHHHHHCCCeEEEeCCc-------------------------------cC--CCCCCEEEECCCCCchHHHHHHHhhc
Q 045794 62 SVRNAIRHLGFGIKDVQTP-------------------------------ED--ILNANRLIFPGVGAFAAAMDVLNKTG 108 (578)
Q Consensus 62 ~i~~~L~~~Gv~v~~v~~~-------------------------------~d--l~~~DGlILpGGg~~~~~~~~l~~~~ 108 (578)
...+.|+.+|+++.++... ++ ..+||+||+|||....... .....
T Consensus 33 ~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l--~~~~~ 110 (224)
T 1u9c_A 33 VPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDF--PDNET 110 (224)
T ss_dssp HHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHS--TTCHH
T ss_pred HHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHh--hcCHH
Confidence 4567788899988876321 11 1369999999985321111 11235
Q ss_pred HHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 109 MAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 109 l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
+.++|+++.+.++||.+||.|-++|+.+
T Consensus 111 l~~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 111 LQYVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp HHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 7789999999999999999999999984
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.017 Score=60.59 Aligned_cols=155 Identities=14% Similarity=0.024 Sum_probs=103.7
Q ss_pred cccEEEeCCcc--ccccCCCCccChHHHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEE
Q 045794 354 FVPLTVGGGIR--DFTDANGRHYSSLEVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVV 429 (578)
Q Consensus 354 ~~pi~~gGGir--~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv 429 (578)
.+|+...+|.. +.++ ..+.++++.+.|.+.+=+ |...++ + ..+.++.+.+.+|++ +.
T Consensus 132 ~vp~y~~~~~~~~~~~~-------~~~~a~~~~~~Gf~~vKik~g~~~~~----~-------~~e~v~avR~a~G~~-~~ 192 (389)
T 2oz8_A 132 RVKAYASGLDFHLDDDA-------FVSLFSHAASIGYSAFKIKVGHRDFD----R-------DLRRLELLKTCVPAG-SK 192 (389)
T ss_dssp EEEEEEECCBTTCCHHH-------HHHHHHHHHHTTCCEEEEECCCSSHH----H-------HHHHHHHHHTTSCTT-CE
T ss_pred ceEEEEeCCCcCCCHHH-------HHHHHHHHHHhCCCEEEEccCCCCHH----H-------HHHHHHHHHHhhCCC-Ce
Confidence 35665545543 3332 245677888888775544 431111 1 137788888889865 66
Q ss_pred EEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHH--cCCcEEEEeccCCCCCCC
Q 045794 430 VSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVED--LGAGEILLNCIDCDGQGK 507 (578)
Q Consensus 430 ~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~--~G~~~ii~tdi~~dG~~~ 507 (578)
+.+|+.. +|.. -+..++++.+++ +++..| +.-..
T Consensus 193 l~vDan~----------------------------------~~~~---~~a~~~~~~l~~~g~~i~~i-------EqP~~ 228 (389)
T 2oz8_A 193 VMIDPNE----------------------------------AWTS---KEALTKLVAIREAGHDLLWV-------EDPIL 228 (389)
T ss_dssp EEEECTT----------------------------------CBCH---HHHHHHHHHHHHTTCCCSEE-------ESCBC
T ss_pred EEEECCC----------------------------------CCCH---HHHHHHHHHHHhcCCCceEE-------eCCCC
Confidence 6788643 2321 135788999999 666533 11222
Q ss_pred CCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 508 GFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 508 G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
-.|++.++++++.+ ++||++.+.+ +.++++++++...++.+.+. .|-....++.+..++.|+++
T Consensus 229 ~~~~~~~~~l~~~~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik----GGit~a~~i~~~A~~~gi~~ 293 (389)
T 2oz8_A 229 RHDHDGLRTLRHAVTWTQINSGEYL-DLQGKRLLLEAHAADILNVH----GQVTDVMRIGWLAAELGIPI 293 (389)
T ss_dssp TTCHHHHHHHHHHCCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC----SCHHHHHHHHHHHHHHTCCE
T ss_pred CcCHHHHHHHHhhCCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC----cCHHHHHHHHHHHHHcCCeE
Confidence 34899999999999 9999999999 99999999975568888876 44334556777778888775
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0091 Score=59.69 Aligned_cols=78 Identities=21% Similarity=0.164 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
..++.|+.+ ..+.|++.|-+-.-+.. . ...+++.++++.+.+ ++|+..+|||++.+| ++++
T Consensus 169 v~t~ee~~~-A~~~Gad~IGv~~r~l~---~--~~~dl~~~~~l~~~v~~~~pvVaegGI~t~ed-----------v~~l 231 (272)
T 3qja_A 169 VHTEQEADR-ALKAGAKVIGVNARDLM---T--LDVDRDCFARIAPGLPSSVIRIAESGVRGTAD-----------LLAY 231 (272)
T ss_dssp ESSHHHHHH-HHHHTCSEEEEESBCTT---T--CCBCTTHHHHHGGGSCTTSEEEEESCCCSHHH-----------HHHH
T ss_pred cCCHHHHHH-HHHCCCCEEEECCCccc---c--cccCHHHHHHHHHhCcccCEEEEECCCCCHHH-----------HHHH
Confidence 457766544 44679997776532211 1 134567788888877 799999999999876 9999
Q ss_pred HHcCcceeecchhhhcc
Q 045794 384 FRSGADKISIGSDAVYA 400 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~ 400 (578)
.++|++.|+||++.++.
T Consensus 232 ~~~GadgvlVGsal~~a 248 (272)
T 3qja_A 232 AGAGADAVLVGEGLVTS 248 (272)
T ss_dssp HHTTCSEEEECHHHHTC
T ss_pred HHcCCCEEEEcHHHhCC
Confidence 99999999999998864
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0048 Score=79.64 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=70.7
Q ss_pred HHHHHHHHHcCCc------EEEEeccCCCCCCCCCCH-HHH----HHHHhhCCCcEEEecCCCCHHHHHHHH--------
Q 045794 481 YELAKAVEDLGAG------EILLNCIDCDGQGKGFDM-DLI----KLISDAVSIPVIASSGAGAVEHFSDVF-------- 541 (578)
Q Consensus 481 ~e~~~~~~~~G~~------~ii~tdi~~dG~~~G~d~-~li----~~l~~~~~ipVIasGGi~s~eDi~~l~-------- 541 (578)
.+.++++.+.|++ .|++...+.-|+....++ +++ .++++.+++|||++|||++.+++.+++
T Consensus 554 ~~~a~~~~~i~~d~~~~~y~vv~~G~eaGGH~g~~~~~~ll~~~~~~ir~~~~iPViaaGGI~d~~~vaaal~g~ws~~~ 633 (3089)
T 3zen_D 554 VEQIRSVIRIAAEVPTKPVIVHIEGGRAGGHHSWEDLDDLLLATYSELRSRSNITICVGGGIGTPERSAEYLSGRWAEVH 633 (3089)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEECCSSSSEECCSCCHHHHHHHHHHHHTTCTTEEEEEESSCCCTTTTHHHHHTGGGGTT
T ss_pred HHHHHHHHHhhhhcCCCcEEEEEeCCCcCCCCCcccHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHhcccccccc
Confidence 5667778888887 788999888776655565 455 777888899999999999999999988
Q ss_pred ---HhcCchHHhhhhhhccCCCC--HHHHHHHHHhC
Q 045794 542 ---RKTNASAALAAGIFHRKEVP--IQSVKEHLYKE 572 (578)
Q Consensus 542 ---~~~G~~gv~vgsa~~~~~~~--~~~~~~~l~~~ 572 (578)
. +||+||++||+|..-.-. -+..|+.|.+.
T Consensus 634 ~~p~-lGAdGV~vGTrfl~t~Ea~~s~~~K~~l~~a 668 (3089)
T 3zen_D 634 GYPL-MPIDGILVGTAAMATLEATTSPQVKQLLVET 668 (3089)
T ss_dssp TCCC-CCCSEEECSSTTTTCTTSCBCHHHHHHHHHC
T ss_pred CccC-CCCCEEEecHHHHhCcccCCCHHHHHHHHhC
Confidence 5 899999999998654321 34567766543
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0057 Score=59.30 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=48.3
Q ss_pred cCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-----cccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeec
Q 045794 319 EGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-----FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISI 393 (578)
Q Consensus 319 ~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-----~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~ 393 (578)
.+++.+++.=.....++.......++.++++++.+ .+|+.++|||+ .+. +.+++++||+.|++
T Consensus 139 ~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n-----------~~~~~~aGad~vvv 206 (230)
T 1rpx_A 139 DAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKN-----------AYKVIEAGANALVA 206 (230)
T ss_dssp TTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTT-----------HHHHHHHTCCEEEE
T ss_pred hhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHH-----------HHHHHHcCCCEEEE
Confidence 57887765444321122212233456666666655 68999999999 454 88899999999999
Q ss_pred chhhhcc
Q 045794 394 GSDAVYA 400 (578)
Q Consensus 394 gt~~~~~ 400 (578)
||..++.
T Consensus 207 gSaI~~a 213 (230)
T 1rpx_A 207 GSAVFGA 213 (230)
T ss_dssp SHHHHTS
T ss_pred ChhhhCC
Confidence 9998874
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.01 Score=62.39 Aligned_cols=144 Identities=13% Similarity=0.146 Sum_probs=100.6
Q ss_pred HHHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|.+.+=+ |....+ + ..+.++.+.+.+|++ +.+.+|+..
T Consensus 167 ~~~a~~~~~~Gf~~vKik~g~~~~~----~-------~~e~v~avR~avg~d-~~l~vDan~------------------ 216 (393)
T 2og9_A 167 MVNASASIERGIGGIKLKVGQPDGA----L-------DIARVTAVRKHLGDA-VPLMVDANQ------------------ 216 (393)
T ss_dssp HHHHHHHHHTTCCCEEEECCCSCHH----H-------HHHHHHHHHHHHCTT-SCEEEECTT------------------
T ss_pred HHHHHHHHHcCCCEEEEecCCCCHH----H-------HHHHHHHHHHHcCCC-CEEEEECCC------------------
Confidence 35677888888875544 321111 1 137788888888865 556778532
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|.. -+..++++.++++|+..| +.-....|++.++++++.+++||++.+.+.++
T Consensus 217 ----------------~~~~---~~a~~~~~~l~~~~i~~i-------E~P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~ 270 (393)
T 2og9_A 217 ----------------QWDR---PTAQRMCRIFEPFNLVWI-------EEPLDAYDHEGHAALALQFDTPIATGEMLTSA 270 (393)
T ss_dssp ----------------CCCH---HHHHHHHHHHGGGCCSCE-------ECCSCTTCHHHHHHHHHHCSSCEEECTTCCSH
T ss_pred ----------------CCCH---HHHHHHHHHHHhhCCCEE-------ECCCCcccHHHHHHHHHhCCCCEEeCCCcCCH
Confidence 2321 135788899999988754 22233458999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
++++++++...++.+.+--.-..|-....++.+..++.|++|
T Consensus 271 ~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~ 312 (393)
T 2og9_A 271 AEHGDLIRHRAADYLMPDAPRVGGITPFLKIASLAEHAGLML 312 (393)
T ss_dssp HHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHCCCCCEEeeCccccCCHHHHHHHHHHHHHcCCEE
Confidence 999999975557877654444445445667888888888876
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0077 Score=60.26 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 482 ELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-----SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 482 e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-----~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
+-++++.+.|++.|.+-. .+.+.++++.+.+ ++|+.++||| +++.+.++.+ +|++++.+|+++|
T Consensus 193 ee~~~A~~aGaD~I~ld~---------~~~~~l~~~v~~l~~~~~~~~i~AsGGI-~~~ni~~~~~-aGaD~i~vGs~i~ 261 (273)
T 2b7n_A 193 EEAKNAMNAGADIVMCDN---------LSVLETKEIAAYRDAHYPFVLLEASGNI-SLESINAYAK-SGVDAISVGALIH 261 (273)
T ss_dssp HHHHHHHHHTCSEEEEET---------CCHHHHHHHHHHHHHHCTTCEEEEESSC-CTTTHHHHHT-TTCSEEECTHHHH
T ss_pred HHHHHHHHcCCCEEEECC---------CCHHHHHHHHHHhhccCCCcEEEEECCC-CHHHHHHHHH-cCCcEEEEcHHhc
Confidence 445566678999887643 3456666554443 3899999999 8999999985 9999999999988
Q ss_pred cC
Q 045794 557 RK 558 (578)
Q Consensus 557 ~~ 558 (578)
.-
T Consensus 262 ~a 263 (273)
T 2b7n_A 262 QA 263 (273)
T ss_dssp TC
T ss_pred CC
Confidence 64
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0088 Score=62.44 Aligned_cols=79 Identities=24% Similarity=0.335 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCC-----------chhHHHHHHHhhhccccEEEeCCccccccCCCCccCh
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGD-----------LPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSS 376 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~-----------~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~ 376 (578)
++. .|+...+.|+|.|.+.--.+ +++.+. ...+++++++.+.+++||.+.|||++.++
T Consensus 154 t~~-~a~~a~~~GaD~i~v~g~~~--GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~~-------- 222 (369)
T 3bw2_A 154 TPE-EARAVEAAGADAVIAQGVEA--GGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGGQ-------- 222 (369)
T ss_dssp SHH-HHHHHHHTTCSEEEEECTTC--SEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHHH--------
T ss_pred CHH-HHHHHHHcCCCEEEEeCCCc--CCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHHH--------
Confidence 443 47788889999888633221 111110 12488899998888999999999999866
Q ss_pred HHHHHHHHHcCcceeecchhhhcc
Q 045794 377 LEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+.+++++||+.|.+||..+.+
T Consensus 223 ---~~~~l~~GAd~V~vGs~~~~~ 243 (369)
T 3bw2_A 223 ---IAAVLAAGADAAQLGTAFLAT 243 (369)
T ss_dssp ---HHHHHHTTCSEEEESHHHHTS
T ss_pred ---HHHHHHcCCCEEEEChHHhCC
Confidence 999999999999999999875
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.015 Score=55.18 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHcCCCeE-EEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEI-SFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i-~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+|.+.++.+.+.|++.+ ...=..+...+.. ... +.|+++.+. .+|+.+.|||+ .+. ++++++
T Consensus 114 ~~p~~~~~~~~~~g~d~v~~~~~~~~~~~g~~--~~~-~~i~~~~~~-~~pi~v~GGI~-~~~-----------~~~~~~ 177 (207)
T 3ajx_A 114 EDKATRAQEVRALGAKFVEMHAGLDEQAKPGF--DLN-GLLAAGEKA-RVPFSVAGGVK-VAT-----------IPAVQK 177 (207)
T ss_dssp SSHHHHHHHHHHTTCSEEEEECCHHHHTSTTC--CTH-HHHHHHHHH-TSCEEEESSCC-GGG-----------HHHHHH
T ss_pred CChHHHHHHHHHhCCCEEEEEecccccccCCC--chH-HHHHHhhCC-CCCEEEECCcC-HHH-----------HHHHHH
Confidence 478887777777898876 4321122111211 122 566666653 68999999999 444 889999
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
+||+.|++||..++.
T Consensus 178 aGad~vvvGsaI~~~ 192 (207)
T 3ajx_A 178 AGAEVAVAGGAIYGA 192 (207)
T ss_dssp TTCSEEEESHHHHTS
T ss_pred cCCCEEEEeeeccCC
Confidence 999999999998874
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.023 Score=56.47 Aligned_cols=91 Identities=19% Similarity=0.146 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCcEEEEecc-CCC---CCCCCCCH----HHHHHHHhhC-----CCcEEEec-CCCCHHHHHHHHHhc-C
Q 045794 481 YELAKAVEDLGAGEILLNCI-DCD---GQGKGFDM----DLIKLISDAV-----SIPVIASS-GAGAVEHFSDVFRKT-N 545 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi-~~d---G~~~G~d~----~li~~l~~~~-----~ipVIasG-Gi~s~eDi~~l~~~~-G 545 (578)
.+-++.+.++|++.|+++-= +.. |+.....+ +.+.++.++. ++.|++.| ||.+++|++.+++.+ |
T Consensus 173 ~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G 252 (286)
T 2p10_A 173 PEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSCQG 252 (286)
T ss_dssp HHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCC
Confidence 56677888999999998864 322 33333333 3444443322 56666666 999999999999732 7
Q ss_pred chHHhhhhhhccCC--CCHHHHHHHHHh
Q 045794 546 ASAALAAGIFHRKE--VPIQSVKEHLYK 571 (578)
Q Consensus 546 ~~gv~vgsa~~~~~--~~~~~~~~~l~~ 571 (578)
++|++.+|++-.-+ -.+.++.+.+|+
T Consensus 253 ~~G~~gASsier~p~e~ai~~~~~~fk~ 280 (286)
T 2p10_A 253 CHGFYGASSMERLPAEEAIRSQTLAFKA 280 (286)
T ss_dssp CCEEEESHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEeehhhhcCCHHHHHHHHHHHHHh
Confidence 99999999886543 123444444444
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.01 Score=61.77 Aligned_cols=75 Identities=23% Similarity=0.283 Sum_probs=56.5
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCC--------CCchhHHHHHHHhh---hccccEEEeCCccccccCCCCccChHHH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPL--------GDLPMLQVLRLTSE---NVFVPLTVGGGIRDFTDANGRHYSSLEV 379 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~--------~~~~~~~~i~~i~~---~~~~pi~~gGGir~~~d~~~~~~~~~~~ 379 (578)
+.|+.+.+.|+|.|.+ -.. .+.. -..+.+..|.++++ .+++||+..|||++.+|
T Consensus 161 e~A~~a~~aGAD~I~v-G~g---pGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~d----------- 225 (366)
T 4fo4_A 161 EGARALIEAGVSAVKV-GIG---PGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGD----------- 225 (366)
T ss_dssp HHHHHHHHHTCSEEEE-CSS---CSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHH-----------
T ss_pred HHHHHHHHcCCCEEEE-ecC---CCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHH-----------
Confidence 6788888999998886 211 1110 01245666776664 56899999999999876
Q ss_pred HHHHHHcCcceeecchhhhcc
Q 045794 380 ASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 380 ~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+.+++.+||+.|.+||..+..
T Consensus 226 i~kala~GAd~V~vGs~f~~t 246 (366)
T 4fo4_A 226 ISKAIAAGASCVMVGSMFAGT 246 (366)
T ss_dssp HHHHHHTTCSEEEESTTTTTB
T ss_pred HHHHHHcCCCEEEEChHhhcC
Confidence 999999999999999988874
|
| >3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0064 Score=60.19 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=57.8
Q ss_pred cEEEEEECCCCC---HHHHHHHH-HHCCCeEEEeCCc------------------cCC-CCCCEEEECCCC-CchHHHHH
Q 045794 48 SVVTLLDYGAGN---VRSVRNAI-RHLGFGIKDVQTP------------------EDI-LNANRLIFPGVG-AFAAAMDV 103 (578)
Q Consensus 48 ~~I~vld~~~g~---~~~i~~~L-~~~Gv~v~~v~~~------------------~dl-~~~DGlILpGGg-~~~~~~~~ 103 (578)
++|+|+=++--. +....+.| +..|+++.++... +++ ..||.||||||. .. .. .
T Consensus 24 ~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~~~yD~liVPGG~~g~-~~--l 100 (253)
T 3ewn_A 24 EQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCPRDLTVLFAPGGTDGT-LA--A 100 (253)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSCSSCSEEEECCBSHHH-HH--H
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcCCCCCEEEECCCccch-hh--h
Confidence 568888665212 22345677 4668888876431 112 246999999975 21 11 1
Q ss_pred HHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 104 LNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 104 l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
.....+.++|+++.+.+++|.+||-|-.+|+.
T Consensus 101 ~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~ 132 (253)
T 3ewn_A 101 ASDAETLAFMADRGARAKYITSVCSGSLILGA 132 (253)
T ss_dssp TTCHHHHHHHHHHHTTCSEEEEETTHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCEEEEEChHHHHHHH
Confidence 12235788999999999999999999999998
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.011 Score=66.77 Aligned_cols=82 Identities=24% Similarity=0.180 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEec--ccC---CCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNI--TGF---RDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl--~~~---~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+.+++|+.+.+.|++.|++-.= +.. .........+++.++++++.+++||...|||++.++ +++
T Consensus 229 ~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~~-----------a~~ 297 (671)
T 1ps9_A 229 ETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQV-----------ADD 297 (671)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHH-----------HHH
T ss_pred HHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcCceEEEeCCCCCHHH-----------HHH
Confidence 6778999999999999987420 000 000111234578899999999999999999999866 999
Q ss_pred HHHcC-cceeecchhhhcc
Q 045794 383 YFRSG-ADKISIGSDAVYA 400 (578)
Q Consensus 383 ~l~~G-a~~vv~gt~~~~~ 400 (578)
+++.| ||-|.+|..++.|
T Consensus 298 ~l~~g~aD~V~~gR~~l~~ 316 (671)
T 1ps9_A 298 ILSRGDADMVSMARPFLAD 316 (671)
T ss_dssp HHHTTSCSEEEESTHHHHC
T ss_pred HHHcCCCCEEEeCHHHHhC
Confidence 99998 9999999999985
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0071 Score=58.90 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEecc-cCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNIT-GFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~-~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.|++.++.+.+ .+|.+.+.=.+ +. ++..-....++-|+++++.. +.+|+++|||+. +. ++++.+
T Consensus 123 t~~e~l~~~l~-~~D~Vl~msv~pGf-~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~-~t-----------~~~~~~ 188 (228)
T 3ovp_A 123 TSVEYLAPWAN-QIDMALVMTVEPGF-GGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP-DT-----------VHKCAE 188 (228)
T ss_dssp SCGGGTGGGGG-GCSEEEEESSCTTT-CSCCCCGGGHHHHHHHHHHCTTCEEEEESSCST-TT-----------HHHHHH
T ss_pred CCHHHHHHHhc-cCCeEEEeeecCCC-CCcccCHHHHHHHHHHHHhcCCCCEEEeCCcCH-HH-----------HHHHHH
Confidence 44555555544 37877765554 33 22222245677788888765 589999999974 43 999999
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
+|||.+|+||+.+..
T Consensus 189 aGAd~~VvGsaIf~a 203 (228)
T 3ovp_A 189 AGANMIVSGSAIMRS 203 (228)
T ss_dssp HTCCEEEESHHHHTC
T ss_pred cCCCEEEEeHHHhCC
Confidence 999999999988863
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0042 Score=61.18 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-----cccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-----FVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-----~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
..|++.++.+.+ .+|.+.+.=.+.-.++..-....++-|+++++.. +++|+|+|||+. + +++
T Consensus 144 ~Tp~e~l~~~l~-~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~~-~-----------ti~ 210 (246)
T 3inp_A 144 ATGIDCLKYVES-NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNP-Y-----------NIA 210 (246)
T ss_dssp TCCSGGGTTTGG-GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCCT-T-----------THH
T ss_pred CCCHHHHHHHHh-cCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcCH-H-----------HHH
Confidence 345566665554 5888887666522222211244566677766542 488999999995 3 399
Q ss_pred HHHHcCcceeecchhhhcc
Q 045794 382 EYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~ 400 (578)
++.++|||.+|+||+.+..
T Consensus 211 ~~~~aGAD~~V~GSaIf~a 229 (246)
T 3inp_A 211 EIAVCGVNAFVAGSAIFNS 229 (246)
T ss_dssp HHHTTTCCEEEESHHHHTS
T ss_pred HHHHcCCCEEEEehHHhCC
Confidence 9999999999999988863
|
| >3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0038 Score=61.47 Aligned_cols=64 Identities=11% Similarity=0.032 Sum_probs=44.4
Q ss_pred CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCce
Q 045794 84 LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGV 152 (578)
Q Consensus 84 ~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~ 152 (578)
.+||+||+|||.....++ .....+.++++++.+.++||-+||-|-.+|+.+-. ...|-|+++++
T Consensus 97 ~~yD~l~vpGG~~~~~~l--~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a~~---~~~g~gll~G~ 160 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDY--PKAKNLQDIASKIYANGGVIAAICHGPLLFDGLID---IKTTRPLIEGK 160 (244)
T ss_dssp GGCSEEEECCSTTHHHHG--GGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBC---TTTSSBTTTTC
T ss_pred hhCCEEEEcCCCchhhhc--ccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhhc---cccCCceeCCc
Confidence 569999999985321111 12235778999999999999999999999998410 00234666665
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.006 Score=61.69 Aligned_cols=72 Identities=19% Similarity=0.149 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHcCCcEEEEe-----ccCCCC-CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHH
Q 045794 477 PIGAYELAKAVEDLGAGEILLN-----CIDCDG-QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAA 549 (578)
Q Consensus 477 ~~~~~e~~~~~~~~G~~~ii~t-----di~~dG-~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv 549 (578)
++++.+.++.+++.|+++|.+. |+...| ...+.+++.++++++.+++||++-++++..++++.+.+ .|||+|
T Consensus 27 d~~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v~iPvl~k~~i~~ide~qil~a-aGAD~I 104 (297)
T 4adt_A 27 DVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKVRIGHFVEAQILEE-LKVDML 104 (297)
T ss_dssp EESSHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTCCSEEEEEEETTCHHHHHHHHH-TTCSEE
T ss_pred CCCcHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhcCCCEEEeccCCcHHHHHHHHH-cCCCEE
Confidence 5566799999999999999877 666555 36667999999999999999999999999999988874 999998
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.013 Score=61.86 Aligned_cols=90 Identities=13% Similarity=0.058 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHcC------CCeEEEEecccCC--CCCC---CCc-hhHHHHHHHhhhccccEEEeCCccccccCCCCccC
Q 045794 308 KPVELARQYYKEG------ADEISFLNITGFR--DFPL---GDL-PMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYS 375 (578)
Q Consensus 308 ~p~~~a~~~~~~g------~~~i~~~Dl~~~~--~~~~---~~~-~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~ 375 (578)
+.+++|+.+.+.| ++.|++..=.... .... ..+ .+.+.++++++.+++||.+.||| +.++
T Consensus 261 ~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~~G~i-~~~~------- 332 (402)
T 2hsa_B 261 LGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGGY-TREL------- 332 (402)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSSCEEEESSC-CHHH-------
T ss_pred HHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCCCCEEEeCCC-CHHH-------
Confidence 4678999999999 9999986421100 0000 002 35788899999999999999999 8765
Q ss_pred hHHHHHHHHHcC-cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 376 SLEVASEYFRSG-ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 376 ~~~~~~~~l~~G-a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
++++++.| ||-|.+|..++.| |++++++.+
T Consensus 333 ----a~~~l~~g~aD~V~igR~~l~d------------P~l~~k~~~ 363 (402)
T 2hsa_B 333 ----GIEAVAQGDADLVSYGRLFISN------------PDLVMRIKL 363 (402)
T ss_dssp ----HHHHHHTTSCSEEEESHHHHHC------------TTHHHHHHH
T ss_pred ----HHHHHHCCCCceeeecHHHHhC------------chHHHHHHh
Confidence 99999998 9999999999985 466777765
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0095 Score=62.74 Aligned_cols=77 Identities=27% Similarity=0.277 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
.+.|+.+.+.|++.|.+-.-.+.. .....+.++.+.++.+.+ .+||.+.|||++-+| +.+++.+|
T Consensus 263 ~e~A~~a~~aGad~I~vs~~ggr~--~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~D-----------v~kalalG 329 (392)
T 2nzl_A 263 GDDAREAVKHGLNGILVSNHGARQ--LDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTD-----------VLKALALG 329 (392)
T ss_dssp HHHHHHHHHTTCCEEEECCGGGTS--STTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHH-----------HHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCc--CCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHH-----------HHHHHHhC
Confidence 467999999999988874432211 112246788899998877 599999999999987 89999999
Q ss_pred cceeecchhhhc
Q 045794 388 ADKISIGSDAVY 399 (578)
Q Consensus 388 a~~vv~gt~~~~ 399 (578)
|+-|.+|+..+.
T Consensus 330 Ad~V~iGr~~l~ 341 (392)
T 2nzl_A 330 AKAVFVGRPIVW 341 (392)
T ss_dssp CSEEEECHHHHH
T ss_pred CCeeEECHHHHH
Confidence 999999997775
|
| >3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ... | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0057 Score=68.62 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=60.6
Q ss_pred CcEEEEEECC-C--CCHHHHHHHHHHCCCeEEEeCCc------------------cCC--CCCCEEEECCCCCchHHHHH
Q 045794 47 DSVVTLLDYG-A--GNVRSVRNAIRHLGFGIKDVQTP------------------EDI--LNANRLIFPGVGAFAAAMDV 103 (578)
Q Consensus 47 ~~~I~vld~~-~--g~~~~i~~~L~~~Gv~v~~v~~~------------------~dl--~~~DGlILpGGg~~~~~~~~ 103 (578)
.++|+|+=.+ . .-.....+.|+++|+++.++... ++. ..||+|||||| ... .+.
T Consensus 600 grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~-~Lr- 676 (753)
T 3ttv_A 600 GRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIA-DIA- 676 (753)
T ss_dssp TCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGG-GTT-
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChH-Hhh-
Confidence 4568877432 1 13446678999999999887431 111 24899999998 322 111
Q ss_pred HHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 104 LNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 104 l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
....+.++|+++.+.++||-+||-|-++|+.+
T Consensus 677 -~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 677 -DNGDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp -TCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred -hCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 11246789999999999999999999999985
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.01 Score=62.00 Aligned_cols=77 Identities=25% Similarity=0.288 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
.+.|+...+.|++.|.+-.-.+-. .......++.+.++.+.+ .+||.+.|||++-+| +.+++.+|
T Consensus 240 ~e~a~~a~~~Gad~I~vs~~ggr~--~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D-----------~~kalalG 306 (368)
T 2nli_A 240 PEDADMAIKRGASGIWVSNHGARQ--LYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEH-----------VAKALASG 306 (368)
T ss_dssp HHHHHHHHHTTCSEEEECCGGGTS--CSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHH-----------HHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEcCCCcCC--CCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHH-----------HHHHHHcC
Confidence 377899999999988874432211 111245788999998877 699999999999977 89999999
Q ss_pred cceeecchhhhc
Q 045794 388 ADKISIGSDAVY 399 (578)
Q Consensus 388 a~~vv~gt~~~~ 399 (578)
|+-|.+|+..+.
T Consensus 307 Ad~V~iGr~~l~ 318 (368)
T 2nli_A 307 ADVVALGRPVLF 318 (368)
T ss_dssp CSEEEECHHHHH
T ss_pred CCEEEECHHHHH
Confidence 999999997765
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0069 Score=58.12 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-----cccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-----FVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-----~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
+.++.+. .+++.+++.=.+...++.......++.++++++.+ ++|+.++|||+ .++ ++++.+
T Consensus 123 e~~~~~~-~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~-----------~~~~~~ 189 (220)
T 2fli_A 123 TALEPLL-DLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKT-----------IRACYE 189 (220)
T ss_dssp GGGGGGT-TTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTT-----------HHHHHH
T ss_pred HHHHHHH-hhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHH-----------HHHHHH
Confidence 4444443 45886665323322222222222344455555433 68999999999 555 888999
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
+|++.+++||+.++.
T Consensus 190 ~Gad~vvvGsai~~~ 204 (220)
T 2fli_A 190 AGANVFVAGSYLFKA 204 (220)
T ss_dssp HTCCEEEESHHHHTS
T ss_pred cCCCEEEEChHHhCC
Confidence 999999999998874
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.015 Score=60.52 Aligned_cols=143 Identities=13% Similarity=0.149 Sum_probs=100.6
Q ss_pred HHHHHHHH-cCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 378 EVASEYFR-SGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 378 ~~~~~~l~-~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
+.++++.+ .|.+.+=+ |...++. ..+.++.+.+.+|++ +-+.+|+..
T Consensus 148 ~~a~~~~~~~Gf~~iKik~g~~~~~~-----------~~e~v~avr~a~g~~-~~l~vDan~------------------ 197 (370)
T 1nu5_A 148 DSALEMIETRRHNRFKVKLGARTPAQ-----------DLEHIRSIVKAVGDR-ASVRVDVNQ------------------ 197 (370)
T ss_dssp HHHHHHHHTTSCSEEEEECSSSCHHH-----------HHHHHHHHHHHHGGG-CEEEEECTT------------------
T ss_pred HHHHHHHHhCCccEEEEecCCCChHH-----------HHHHHHHHHHhcCCC-CEEEEECCC------------------
Confidence 56778888 88775444 4211111 136788888888854 567888543
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|.. -+..++++.++++|+..| +.-....|++.++++++.+++||++.+.+.+.
T Consensus 198 ----------------~~~~---~~a~~~~~~l~~~~i~~i-------EqP~~~~~~~~~~~l~~~~~ipIa~dE~~~~~ 251 (370)
T 1nu5_A 198 ----------------GWDE---QTASIWIPRLEEAGVELV-------EQPVPRANFGALRRLTEQNGVAILADESLSSL 251 (370)
T ss_dssp ----------------CCCH---HHHHHHHHHHHHHTCCEE-------ECCSCTTCHHHHHHHHHHCSSEEEESTTCCSH
T ss_pred ----------------CCCH---HHHHHHHHHHHhcCcceE-------eCCCCcccHHHHHHHHHhCCCCEEeCCCCCCH
Confidence 2321 135788999999998754 12233358999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
++++++++...++.+.+--.-..|.....++.+..++.|++|
T Consensus 252 ~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~ 293 (370)
T 1nu5_A 252 SSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISS 293 (370)
T ss_dssp HHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHhCCCCEEEEchhhcCCHHHHHHHHHHHHHcCCcE
Confidence 999999975568877765444555555667777888888875
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0071 Score=61.46 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=43.3
Q ss_pred hhHHHHHHHhhhccccEE--EeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 341 PMLQVLRLTSENVFVPLT--VGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 341 ~~~~~i~~i~~~~~~pi~--~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
.++++++++.+.+.+||. +.|||++.+| +.+++++||+.|++||+.+..
T Consensus 194 ~~~~~i~~i~~~~~iPvi~~a~GGI~~~~d-----------~~~~~~~GadgV~vGsai~~~ 244 (305)
T 2nv1_A 194 APYELLLQIKKDGKLPVVNFAAGGVATPAD-----------AALMMQLGADGVFVGSGIFKS 244 (305)
T ss_dssp CCHHHHHHHHHHTSCSSCEEBCSCCCSHHH-----------HHHHHHTTCSCEEECGGGGGS
T ss_pred ccHHHHHHHHHhcCCCEEEEeccCCCCHHH-----------HHHHHHcCCCEEEEcHHHHcC
Confidence 357889999888889998 8999999876 999999999999999999863
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0049 Score=60.13 Aligned_cols=81 Identities=21% Similarity=0.159 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-----cccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-----FVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-----~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
..|++.++.+.+ ++|.+.+.-.+.-.++..-....++-|+++++.. +++|+++|||+.. ++.
T Consensus 116 ~tp~~~~~~~l~-~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~~~------------~~~ 182 (231)
T 3ctl_A 116 ETPVEAMKYYIH-KADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQA------------TYE 182 (231)
T ss_dssp TCCGGGGTTTGG-GCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCSTT------------THH
T ss_pred CCcHHHHHHHHh-cCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcCHH------------HHH
Confidence 356666666654 6998888777642233222234566666666544 5899999999973 399
Q ss_pred HHHHcCcceeecc-hhhhcc
Q 045794 382 EYFRSGADKISIG-SDAVYA 400 (578)
Q Consensus 382 ~~l~~Ga~~vv~g-t~~~~~ 400 (578)
++.++|||.+|+| |+.+..
T Consensus 183 ~~~~aGAd~~V~G~saif~~ 202 (231)
T 3ctl_A 183 KLMAAGADVFIVGTSGLFNH 202 (231)
T ss_dssp HHHHHTCCEEEECTTTTGGG
T ss_pred HHHHcCCCEEEEccHHHhCC
Confidence 9999999999999 887763
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.012 Score=61.97 Aligned_cols=79 Identities=25% Similarity=0.305 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCCeEEEEeccc-----CCCCCCCCchhHHHHHHHhhh---ccccEEEeCCccccccCCCCccChHHHHH
Q 045794 310 VELARQYYKEGADEISFLNITG-----FRDFPLGDLPMLQVLRLTSEN---VFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~-----~~~~~~~~~~~~~~i~~i~~~---~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+.|+.+.+.|+|.|.+ -..+ .+.......+++..+.++++. +++||+..|||++.+| +.
T Consensus 195 ~e~A~~a~~aGAD~I~v-G~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~d-----------i~ 262 (400)
T 3ffs_A 195 EEATKELIENGADGIKV-GIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGD-----------IG 262 (400)
T ss_dssp HHHHHHHHHTTCSEEEE-CC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHH-----------HH
T ss_pred HHHHHHHHHcCCCEEEE-eCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHH-----------HH
Confidence 47888899999998886 2110 000000114567788887654 5899999999999877 99
Q ss_pred HHHHcCcceeecchhhhcc
Q 045794 382 EYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~ 400 (578)
+++.+||+.|.+||.....
T Consensus 263 kalalGAd~V~vGt~f~~t 281 (400)
T 3ffs_A 263 KALAVGASSVMIGSILAGT 281 (400)
T ss_dssp HHHTTTCSEEEECGGGTTB
T ss_pred HHHHcCCCEEEEChHHhcC
Confidence 9999999999999988874
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.088 Score=52.77 Aligned_cols=196 Identities=14% Similarity=0.127 Sum_probs=117.7
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcce
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~ 390 (578)
.+.+..++.+++-| +.++.-.-...+-..-...++.+++...+||.+ ..+ |..+++.+++.+++|..-
T Consensus 33 avl~AAe~~~sPvI--lq~s~~~~~y~g~~~~~~~v~~~a~~~~VPVal-----HlD-----Hg~~~e~i~~ai~~GFtS 100 (286)
T 1gvf_A 33 AILEVCSEMRSPVI--LAGTPGTFKHIALEEIYALCSAYSTTYNMPLAL-----HLD-----HHESLDDIRRKVHAGVRS 100 (286)
T ss_dssp HHHHHHHHHTCCCE--EEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEE-----EEE-----EECCHHHHHHHHHTTCCE
T ss_pred HHHHHHHHhCCCEE--EECChhHHhhcCHHHHHHHHHHHHHhCCCcEEE-----EcC-----CCCCHHHHHHHHHcCCCe
Confidence 45555556666643 444321000111123456777788888899864 222 455678899999999999
Q ss_pred eecchhhhccchhhhhccccCCchHHHHHHH---hCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 391 ISIGSDAVYAAEDYLKTGVKTGKSSLEQISR---VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 391 vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
|.++.+.+.-.+ |.+..+++.+ .+| +++-.--|.+ | |++- .+
T Consensus 101 VMiDgS~lp~ee---------Ni~~Tk~vv~~ah~~g-----vsVEaElG~v----------------g--g~ed---~~ 145 (286)
T 1gvf_A 101 AMIDGSHFPFAE---------NVKLVKSVVDFCHSQD-----CSVEAELGRL----------------G--GVED---DM 145 (286)
T ss_dssp EEECCTTSCHHH---------HHHHHHHHHHHHHHTT-----CEEEEEESCC----------------C-----------
T ss_pred EEECCCCCCHHH---------HHHHHHHHHHHHHHcC-----CEEEEEEeec----------------c--Cccc---Cc
Confidence 999555443111 3344444443 355 3333222211 0 1000 00
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCHHH-HHHHHHh
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAVEH-FSDVFRK 543 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~eD-i~~l~~~ 543 (578)
... ..+..-.++.+..+-+++.|++.+-+.==+.-|.++| .|+++++++.+.+++|++.-||=+.+++ ++++.+
T Consensus 146 ~~~-~~~~~~T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vpLVlHGgSG~~~e~i~~ai~- 223 (286)
T 1gvf_A 146 SVD-AESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIE- 223 (286)
T ss_dssp ------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCCSCEEECCCTTCCHHHHHHHHH-
T ss_pred ccc-cccccCCCHHHHHHHHHHHCCCEEEeecCccccCcCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-
Confidence 000 0111225789999999999999777654455666654 4899999999999999999998776554 787875
Q ss_pred cCchHHhhhhhh
Q 045794 544 TNASAALAAGIF 555 (578)
Q Consensus 544 ~G~~gv~vgsa~ 555 (578)
.|+..+=|++-+
T Consensus 224 ~Gv~KiNi~Tdl 235 (286)
T 1gvf_A 224 LGVTKVNVATEL 235 (286)
T ss_dssp TTEEEEEECHHH
T ss_pred CCCeEEEEChHH
Confidence 898877666644
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.011 Score=64.61 Aligned_cols=78 Identities=19% Similarity=0.205 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCC-----CCCchhHHHHHHHh---hhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFP-----LGDLPMLQVLRLTS---ENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~-----~~~~~~~~~i~~i~---~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+.|+.+.+.|++.|.+ ...+-.-+. .-..+++..+.++. +..++||+++|||++.+| +.
T Consensus 308 ~e~a~~~~~aGad~i~v-g~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~d-----------i~ 375 (511)
T 3usb_A 308 AEATKALIEAGANVVKV-GIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGD-----------MV 375 (511)
T ss_dssp HHHHHHHHHHTCSEEEE-CSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHH-----------HH
T ss_pred HHHHHHHHHhCCCEEEE-CCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHH-----------HH
Confidence 47799999999998875 332210000 00134566666654 445799999999999977 99
Q ss_pred HHHHcCcceeecchhhhc
Q 045794 382 EYFRSGADKISIGSDAVY 399 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~ 399 (578)
+++.+||+.|++|+....
T Consensus 376 kala~GA~~V~vGs~~~~ 393 (511)
T 3usb_A 376 KALAAGAHVVMLGSMFAG 393 (511)
T ss_dssp HHHHTTCSEEEESTTTTT
T ss_pred HHHHhCchhheecHHHhc
Confidence 999999999999998765
|
| >1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0032 Score=61.84 Aligned_cols=51 Identities=4% Similarity=-0.015 Sum_probs=39.0
Q ss_pred CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 84 LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 84 ~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.+||+||+|||.....+. .....+.++|+++.++++||.+||-|-.+|+.+
T Consensus 97 ~~~D~livpGG~~~~~~l--~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLFDY--PKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GGEEEEEECCSTTHHHHG--GGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hhCcEEEECCCCCchhhc--ccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 469999999985321111 122357789999999999999999999999984
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.012 Score=57.18 Aligned_cols=69 Identities=28% Similarity=0.400 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
+..++++...+.|+|.|. +.- +. ...+.+.+.++.+.+.+ .+||...|||++.+| +.++++
T Consensus 133 ~~~~~a~~a~eaGad~I~-tst-g~----~~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~d-----------a~~~l~ 195 (225)
T 1mzh_A 133 EIKKAVEICIEAGADFIK-TST-GF----APRGTTLEEVRLIKSSAKGRIKVKASGGIRDLET-----------AISMIE 195 (225)
T ss_dssp HHHHHHHHHHHHTCSEEE-CCC-SC----SSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHhCCCEEE-ECC-CC----CCCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHH-----------HHHHHH
Confidence 467889999999999882 221 21 11134678888888776 699999999999876 999999
Q ss_pred cCcceeec
Q 045794 386 SGADKISI 393 (578)
Q Consensus 386 ~Ga~~vv~ 393 (578)
+||++|-+
T Consensus 196 aGA~~iG~ 203 (225)
T 1mzh_A 196 AGADRIGT 203 (225)
T ss_dssp TTCSEEEE
T ss_pred hCchHHHH
Confidence 99997543
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.016 Score=60.67 Aligned_cols=144 Identities=17% Similarity=0.193 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCcc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++++.|.. |+=+|...+..+ .+.++.+.+.+|++ +.+.+|+..
T Consensus 151 ~~~a~~~~~~G~~~~K~Kvg~~~~~~d-----------~~~v~avR~~~g~~-~~l~vDan~------------------ 200 (377)
T 3my9_A 151 LERMRAMVPAGHTVFKMKTGVKPHAEE-----------LRILETMRGEFGER-IDLRLDFNQ------------------ 200 (377)
T ss_dssp HHHHHHHTTTTCCEEEEECSSSCHHHH-----------HHHHHHHHHHHGGG-SEEEEECTT------------------
T ss_pred HHHHHHHHHcCCCEEEEccCCCcHHHH-----------HHHHHHHHHHhCCC-CeEEEeCCC------------------
Confidence 3456677777865 344464322221 36788888889854 667788543
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|.. -+..++++.++++++..| +.-...-|++.++++++.+++||.+..-+.+.
T Consensus 201 ----------------~~~~---~~A~~~~~~l~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~ 254 (377)
T 3my9_A 201 ----------------ALTP---FGAMKILRDVDAFRPTFI-------EQPVPRRHLDAMAGFAAALDTPILADESCFDA 254 (377)
T ss_dssp ----------------CCCT---TTHHHHHHHHHTTCCSCE-------ECCSCTTCHHHHHHHHHHCSSCEEESTTCSSH
T ss_pred ----------------CcCH---HHHHHHHHHHhhcCCCEE-------ECCCCccCHHHHHHHHHhCCCCEEECCccCCH
Confidence 2332 257889999999987654 11222338999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+|++++++...++.+.+--.-..|-....++.+.+++.|++|
T Consensus 255 ~~~~~~i~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~ 296 (377)
T 3my9_A 255 VDLMEVVRRQAADAISVKIMKCGGLMKAQSLMAIADTAGLPG 296 (377)
T ss_dssp HHHHHHHHHTCCSEEECCHHHHTSHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeE
Confidence 999999875567776644444445444666777788888875
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.021 Score=58.09 Aligned_cols=95 Identities=20% Similarity=0.263 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCC----CchhHHHHHHHhhhccccEEE-eCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLG----DLPMLQVLRLTSENVFVPLTV-GGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~----~~~~~~~i~~i~~~~~~pi~~-gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+++++|+.+.+.||+ ++|+.+....+.. ...-+++|+.+.+.+++||.+ +-|-.... .+.++
T Consensus 74 ~~~~~~A~~~v~~GAd---iIDIg~~StrP~~~~vs~eee~~vV~~v~~~~~vplsI~DT~~~~~~---------~~V~e 141 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGAD---IVALRLVSAHPDGQNRSGAELAEVCKAVADAIDVPLMIIGCGVEEKD---------AEIFP 141 (310)
T ss_dssp TCHHHHHHHHHHTTCS---EEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCSSCEEEECCSCHHHH---------HHHHH
T ss_pred HHHHHHHHHHHHcCCc---EEEEeCccCCCCCCCCCHHHHHHHHHHHHHhCCceEEEECCCCCCCC---------HHHHH
Confidence 5899999999999998 6777763211111 122366899999888999998 65544442 47899
Q ss_pred HHHHcCcc-eeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 382 EYFRSGAD-KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 382 ~~l~~Ga~-~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
+.+++|++ +.+|++..-.+. +++ -+++.+||.
T Consensus 142 aal~aga~~k~iINdvs~~~~-----------~~~-~~~aa~~g~ 174 (310)
T 2h9a_B 142 VIGEALSGRNCLLSSATKDNY-----------KPI-VATCMVHGH 174 (310)
T ss_dssp HHHHHTTTSCCEEEEECTTTH-----------HHH-HHHHHHHTC
T ss_pred HHHHhCCCCCCEEEECCCCcc-----------HHH-HHHHHHhCC
Confidence 99999997 788877655432 233 456688874
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0085 Score=62.40 Aligned_cols=80 Identities=20% Similarity=0.145 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+.+++|+.+.+.|++.||+..-. . + . +.++++++.+++||...||| +.++ ++++++.|
T Consensus 243 ~~~~la~~l~~~Gvd~i~v~~~~---~---~-~---~~~~~ik~~~~iPvi~~Ggi-t~e~-----------a~~~l~~g 300 (362)
T 4ab4_A 243 TFTYVARELGKRGIAFICSRERE---A---D-D---SIGPLIKEAFGGPYIVNERF-DKAS-----------ANAALASG 300 (362)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCC---C---T-T---CCHHHHHHHHCSCEEEESSC-CHHH-----------HHHHHHTT
T ss_pred HHHHHHHHHHHhCCCEEEECCCC---C---C-H---HHHHHHHHHCCCCEEEeCCC-CHHH-----------HHHHHHcC
Confidence 45678999999999999876422 1 1 1 34677777788999999999 8765 99999998
Q ss_pred -cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 388 -ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 388 -a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
||-|.+|..++.| |++.+++.+
T Consensus 301 ~aD~V~iGR~~lan------------Pdl~~k~~~ 323 (362)
T 4ab4_A 301 KADAVAFGVPFIAN------------PDLPARLAA 323 (362)
T ss_dssp SCSEEEESHHHHHC------------TTHHHHHHT
T ss_pred CccEEEECHHhHhC------------cHHHHHHHc
Confidence 9999999999985 466778765
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0095 Score=61.99 Aligned_cols=80 Identities=13% Similarity=0.051 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+.+++|+.+.+.|++.||+..-. . + . +.++++++.+.+||...||| +.++ ++++++.|
T Consensus 251 ~~~~la~~l~~~Gvd~i~v~~~~--~----~-~---~~~~~ik~~~~iPvi~~Ggi-t~e~-----------a~~~l~~G 308 (361)
T 3gka_A 251 TFGHVARELGRRRIAFLFARESF--G----G-D---AIGQQLKAAFGGPFIVNENF-TLDS-----------AQAALDAG 308 (361)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCC--S----T-T---CCHHHHHHHHCSCEEEESSC-CHHH-----------HHHHHHTT
T ss_pred HHHHHHHHHHHcCCCEEEECCCC--C----C-H---HHHHHHHHHcCCCEEEeCCC-CHHH-----------HHHHHHcC
Confidence 45678999999999999886422 1 1 1 34677777788999999999 8765 99999998
Q ss_pred -cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 388 -ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 388 -a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
||-|.+|..++.| |++.+++.+
T Consensus 309 ~aD~V~iGR~~lad------------Pdl~~k~~~ 331 (361)
T 3gka_A 309 QADAVAWGKLFIAN------------PDLPRRFKL 331 (361)
T ss_dssp SCSEEEESHHHHHC------------TTHHHHHHH
T ss_pred CccEEEECHHhHhC------------cHHHHHHHh
Confidence 9999999999985 466778776
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.023 Score=57.78 Aligned_cols=68 Identities=10% Similarity=0.175 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
++-++++.+.|++.|.+-+ ++.+.++++.+.+ .+++.+|||| +++.+.++.+ +|+|.+.+|+..|+-
T Consensus 241 ldea~eAl~aGaD~I~LDn---------~~~~~l~~av~~l~~~v~ieaSGGI-t~~~I~~~a~-tGVD~isvGalt~sa 309 (320)
T 3paj_A 241 LAELEEAISAGADIIMLDN---------FSLEMMREAVKINAGRAALENSGNI-TLDNLKECAE-TGVDYISVGALTKHL 309 (320)
T ss_dssp HHHHHHHHHTTCSEEEEES---------CCHHHHHHHHHHHTTSSEEEEESSC-CHHHHHHHHT-TTCSEEECTHHHHSB
T ss_pred HHHHHHHHHcCCCEEEECC---------CCHHHHHHHHHHhCCCCeEEEECCC-CHHHHHHHHH-cCCCEEEECceecCC
Confidence 3556677788998777643 3567777776655 6899999999 7899999985 999999999988764
Q ss_pred C
Q 045794 559 E 559 (578)
Q Consensus 559 ~ 559 (578)
+
T Consensus 310 ~ 310 (320)
T 3paj_A 310 K 310 (320)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0096 Score=60.34 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 482 ELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-----SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 482 e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-----~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
+-++++.+.|++.|-+-. .+.+.++++.+.+ ++|+.++||| +++.+.++.+ +|++++.+|+++|
T Consensus 208 ee~~~A~~aGaD~I~ld~---------~~~~~l~~~v~~l~~~~~~~~I~ASGGI-t~~ni~~~~~-aGaD~i~vGs~i~ 276 (299)
T 2jbm_A 208 QEAVQAAEAGADLVLLDN---------FKPEELHPTATVLKAQFPSVAVEASGGI-TLDNLPQFCG-PHIDVISMGMLTQ 276 (299)
T ss_dssp HHHHHHHHTTCSEEEEES---------CCHHHHHHHHHHHHHHCTTSEEEEESSC-CTTTHHHHCC-TTCCEEECTHHHH
T ss_pred HHHHHHHHcCCCEEEECC---------CCHHHHHHHHHHhhccCCCeeEEEECCC-CHHHHHHHHH-CCCCEEEEChhhc
Confidence 445666678999887643 3456666554443 3899999999 8999999985 9999999999888
Q ss_pred cC
Q 045794 557 RK 558 (578)
Q Consensus 557 ~~ 558 (578)
.-
T Consensus 277 ~a 278 (299)
T 2jbm_A 277 AA 278 (299)
T ss_dssp SC
T ss_pred CC
Confidence 63
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.018 Score=59.83 Aligned_cols=144 Identities=19% Similarity=0.255 Sum_probs=100.0
Q ss_pred HHHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|.+.+=+ |..... + ..+.++.+.+.+|++ +-+.+|+..
T Consensus 145 ~~~a~~~~~~Gf~~iKik~g~~~~~----~-------d~~~v~avr~a~g~~-~~l~vDan~------------------ 194 (366)
T 1tkk_A 145 AADAENYLKQGFQTLKIKVGKDDIA----T-------DIARIQEIRKRVGSA-VKLRLDANQ------------------ 194 (366)
T ss_dssp HHHHHHHHHHTCCEEEEECCSSCHH----H-------HHHHHHHHHHHHCSS-SEEEEECTT------------------
T ss_pred HHHHHHHHHcCCCeEEEEeCCCCHH----H-------HHHHHHHHHHHhCCC-CeEEEECCC------------------
Confidence 35577777888765443 421111 1 137788888889865 567888643
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHH--cCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCC
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVED--LGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAG 532 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~--~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~ 532 (578)
+|.. -+..++++.+++ +++..| +.-....|++.++++++.+++||.+.+.+.
T Consensus 195 ----------------~~~~---~~a~~~~~~l~~~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~ipIa~dE~~~ 248 (366)
T 1tkk_A 195 ----------------GWRP---KEAVTAIRKMEDAGLGIELV-------EQPVHKDDLAGLKKVTDATDTPIMADESVF 248 (366)
T ss_dssp ----------------CSCH---HHHHHHHHHHHHTTCCEEEE-------ECCSCTTCHHHHHHHHHHCSSCEEECTTCC
T ss_pred ----------------CCCH---HHHHHHHHHHhhcCCCceEE-------ECCCCcccHHHHHHHHhhCCCCEEEcCCCC
Confidence 2321 135788999999 766543 122333589999999999999999999999
Q ss_pred CHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 533 AVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 533 s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+.++++++++...++.+.+--.-..|.....++.+..++.|+++
T Consensus 249 ~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~ 292 (366)
T 1tkk_A 249 TPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVEC 292 (366)
T ss_dssp SHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCCE
T ss_pred CHHHHHHHHHhCCCCEEEeehhhhcCHHHHHHHHHHHHHcCCcE
Confidence 99999999976668887765555555555667777888888875
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0094 Score=61.31 Aligned_cols=79 Identities=19% Similarity=0.218 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCCeEEEEecccC--------CCC--------CCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCC
Q 045794 310 VELARQYYKEGADEISFLNITGF--------RDF--------PLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGR 372 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~--------~~~--------~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~ 372 (578)
.+.|+.+.+.|+|.|.+-.-.+. +.. .....+.++.+.++.+.+ ++||...|||++.+|
T Consensus 195 ~e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d---- 270 (332)
T 1vcf_A 195 REAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTD---- 270 (332)
T ss_dssp HHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHH----
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHH----
Confidence 36688889999998876432221 110 111236688889998888 799999999999977
Q ss_pred ccChHHHHHHHHHcCcceeecchhhhc
Q 045794 373 HYSSLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 373 ~~~~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
+.+++.+|||-|.+|+..+.
T Consensus 271 -------~~kal~~GAd~V~igr~~l~ 290 (332)
T 1vcf_A 271 -------GAKALALGADLLAVARPLLR 290 (332)
T ss_dssp -------HHHHHHHTCSEEEECGGGHH
T ss_pred -------HHHHHHhCCChHhhhHHHHH
Confidence 88999999999999998774
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.019 Score=57.63 Aligned_cols=71 Identities=14% Similarity=0.085 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCH-HHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDM-DLIKLISDA-VSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~-~li~~l~~~-~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
.+-++++.+.|++.|.+...+.+ ++ +.++.+... ..+++.+|||| +++.+.++.+ +|+|.+++|+++|..
T Consensus 204 ~eea~eal~aGaD~I~LDn~~~~------~~~~~v~~l~~~~~~v~ieaSGGI-t~~~i~~~a~-tGVD~isvG~l~~~a 275 (284)
T 1qpo_A 204 LEQLDAVLPEKPELILLDNFAVW------QTQTAVQRRDSRAPTVMLESSGGL-SLQTAATYAE-TGVDYLAVGALTHSV 275 (284)
T ss_dssp HHHHHHHGGGCCSEEEEETCCHH------HHHHHHHHHHHHCTTCEEEEESSC-CTTTHHHHHH-TTCSEEECGGGTSSB
T ss_pred HHHHHHHHHcCCCEEEECCCCHH------HHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHh-cCCCEEEECHHHcCC
Confidence 46777888899998777774321 11 223333331 25799999999 7899999985 999999999998865
Q ss_pred C
Q 045794 559 E 559 (578)
Q Consensus 559 ~ 559 (578)
+
T Consensus 276 ~ 276 (284)
T 1qpo_A 276 R 276 (284)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0051 Score=60.65 Aligned_cols=63 Identities=11% Similarity=0.069 Sum_probs=44.3
Q ss_pred CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCce
Q 045794 84 LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGV 152 (578)
Q Consensus 84 ~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~ 152 (578)
.+||+||+|||......+ .....+.++++++.+.++||-+||-|-.+|+.+- ...|.|+++++
T Consensus 104 ~~yD~l~ipGG~g~~~~l--~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a~----~~~g~gll~G~ 166 (247)
T 3n7t_A 104 HDYGLMFVCGGHGALYDF--PHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIH----DENGDSVIKDK 166 (247)
T ss_dssp GGCSEEEECCSTTHHHHG--GGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGCB----CTTSSBTTTTC
T ss_pred hhCCEEEEeCCCchhhhc--ccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHhh----cccCCccccCc
Confidence 469999999985321111 1223577899999999999999999999999841 11244666665
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.014 Score=61.00 Aligned_cols=76 Identities=25% Similarity=0.229 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
+.|+.+.+.|++.|.+-.-.+- . .....+.++.+.++.+.+ .+||...|||++.+| +.+++.+||
T Consensus 237 e~a~~a~~~Gad~I~vs~~ggr-~-~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D-----------~~k~l~~GA 303 (370)
T 1gox_A 237 EDARLAVQHGAAGIIVSNHGAR-Q-LDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTD-----------VFKALALGA 303 (370)
T ss_dssp HHHHHHHHTTCSEEEECCGGGT-S-STTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHH-----------HHHHHHHTC
T ss_pred HHHHHHHHcCCCEEEECCCCCc-c-CCCcccHHHHHHHHHHHhCCCCEEEEECCCCCHHH-----------HHHHHHcCC
Confidence 6788899999998887442221 0 111246788999998877 799999999999977 999999999
Q ss_pred ceeecchhhhc
Q 045794 389 DKISIGSDAVY 399 (578)
Q Consensus 389 ~~vv~gt~~~~ 399 (578)
+-|.+|+..+.
T Consensus 304 daV~iGr~~l~ 314 (370)
T 1gox_A 304 AGVFIGRPVVF 314 (370)
T ss_dssp SEEEECHHHHH
T ss_pred CEEeecHHHHH
Confidence 99999998775
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0064 Score=65.98 Aligned_cols=75 Identities=25% Similarity=0.279 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCC--------CCchhHHHHHHHhhh---ccccEEEeCCccccccCCCCccChHHH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPL--------GDLPMLQVLRLTSEN---VFVPLTVGGGIRDFTDANGRHYSSLEV 379 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~--------~~~~~~~~i~~i~~~---~~~pi~~gGGir~~~d~~~~~~~~~~~ 379 (578)
+.|+.+.+.|+|.|.+- .. .+.. -..+++..+.++++. .++||+..|||++.+|
T Consensus 282 e~a~~l~~aGaD~I~vg-~g---~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~d----------- 346 (490)
T 4avf_A 282 EAAKALAEAGADAVKVG-IG---PGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGD----------- 346 (490)
T ss_dssp HHHHHHHHTTCSEEEEC-SS---CSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHH-----------
T ss_pred HHHHHHHHcCCCEEEEC-CC---CCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHH-----------
Confidence 67899999999988861 10 1110 013567788888774 4799999999999977
Q ss_pred HHHHHHcCcceeecchhhhcc
Q 045794 380 ASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 380 ~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+.+++.+||+.|.+||+....
T Consensus 347 i~kal~~GAd~V~vGs~~~~~ 367 (490)
T 4avf_A 347 LAKAMVAGAYCVMMGSMFAGT 367 (490)
T ss_dssp HHHHHHHTCSEEEECTTTTTB
T ss_pred HHHHHHcCCCeeeecHHHhcC
Confidence 999999999999999988763
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.014 Score=63.62 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCC--------CC--CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHH
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFP--------LG--DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEV 379 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~--------~~--~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~ 379 (578)
.+.|+.+.+.|++.|.+ -..+ ++. .+ ...++..++++++.+++||...|||++.+|
T Consensus 307 ~~~a~~l~~aGad~I~v-g~~~--G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~d----------- 372 (514)
T 1jcn_A 307 AAQAKNLIDAGVDGLRV-GMGC--GSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGH----------- 372 (514)
T ss_dssp HHHHHHHHHHTCSEEEE-CSSC--SCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHH-----------
T ss_pred HHHHHHHHHcCCCEEEE-CCCC--CcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHH-----------
Confidence 46799999999998877 2211 100 11 255678889999888999999999999877
Q ss_pred HHHHHHcCcceeecchhhhcc
Q 045794 380 ASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 380 ~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+.+++.+||+.|.+|+..+..
T Consensus 373 i~kala~GAd~V~iG~~~l~~ 393 (514)
T 1jcn_A 373 VVKALALGASTVMMGSLLAAT 393 (514)
T ss_dssp HHHHHHTTCSEEEESTTTTTS
T ss_pred HHHHHHcCCCeeeECHHHHcC
Confidence 999999999999999988875
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.019 Score=60.52 Aligned_cols=142 Identities=12% Similarity=-0.014 Sum_probs=99.0
Q ss_pred HHHHHHHcCcc--ee-ecch--hhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeec
Q 045794 379 VASEYFRSGAD--KI-SIGS--DAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVT 453 (578)
Q Consensus 379 ~~~~~l~~Ga~--~v-v~gt--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~ 453 (578)
.++++.+.|.. |+ -+|. ....+ ..+.++.+.+.+|++ +.+.+|+..
T Consensus 159 ~a~~~~~~G~~~~K~~k~g~~~~~~~~-----------d~~~v~avR~a~G~d-~~l~vDan~----------------- 209 (394)
T 3mqt_A 159 LIAKAKERGAKAVKVCIIPNDKVSDKE-----------IVAYLRELREVIGWD-MDMMVDCLY----------------- 209 (394)
T ss_dssp HHHHHHHTTCSEEEEECCCCTTSCHHH-----------HHHHHHHHHHHHCSS-SEEEEECTT-----------------
T ss_pred HHHHHHHcCCCEEEecccCCCccCHHH-----------HHHHHHHHHHHhCCC-CeEEEECCC-----------------
Confidence 67788888876 44 4452 11111 137788888999865 566778532
Q ss_pred cCCCCCCCcceEEEEEccc-ccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCC
Q 045794 454 DLGPNGEEYAWYQCTVNGG-REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAG 532 (578)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~ 532 (578)
+| .. -+..++++.++++|+..| +.-...-|++.++++++.+++||++.+.+.
T Consensus 210 -----------------~~~~~---~~A~~~~~~L~~~~i~~i-------EeP~~~~~~~~~~~l~~~~~iPIa~dE~~~ 262 (394)
T 3mqt_A 210 -----------------RWTDW---QKARWTFRQLEDIDLYFI-------EACLQHDDLIGHQKLAAAINTRLCGAEMST 262 (394)
T ss_dssp -----------------CCSCH---HHHHHHHHHTGGGCCSEE-------ESCSCTTCHHHHHHHHHHSSSEEEECTTCC
T ss_pred -----------------CCCCH---HHHHHHHHHHhhcCCeEE-------ECCCCcccHHHHHHHHhhCCCCEEeCCCcC
Confidence 23 11 135788999999988765 122222389999999999999999999999
Q ss_pred CHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 533 AVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 533 s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+.++++++++...++.+.+--....|-.....+.+.....|++|
T Consensus 263 ~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~ 306 (394)
T 3mqt_A 263 TRFEAQEWLEKTGISVVQSDYNRCGGVTELLRIMDICEHHNAQL 306 (394)
T ss_dssp HHHHHHHHHHHHCCSEECCCTTTSSCHHHHHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCEE
Confidence 99999999975567877655444455445666777888888876
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0063 Score=66.11 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCCeEEEE------ecccCCCCCCCCchhHHHHHHHhh---hccccEEEeCCccccccCCCCccChHHHHH
Q 045794 311 ELARQYYKEGADEISFL------NITGFRDFPLGDLPMLQVLRLTSE---NVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~------Dl~~~~~~~~~~~~~~~~i~~i~~---~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
+.|+.+.+.|+|.|.+- .......+ -..+++..+.++++ +.++||+++|||++.+| +.
T Consensus 284 e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g--~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~d-----------i~ 350 (496)
T 4fxs_A 284 EGARALIEAGVSAVKVGIGPGSICTTRIVTG--VGVPQITAIADAAGVANEYGIPVIADGGIRFSGD-----------IS 350 (496)
T ss_dssp HHHHHHHHHTCSEEEECSSCCTTBCHHHHHC--CCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHH-----------HH
T ss_pred HHHHHHHHhCCCEEEECCCCCcCcccccccC--CCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHH-----------HH
Confidence 77899999999987742 00000000 01356777777776 34799999999999977 99
Q ss_pred HHHHcCcceeecchhhhc
Q 045794 382 EYFRSGADKISIGSDAVY 399 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~ 399 (578)
+++.+||+.|.+||+...
T Consensus 351 kala~GAd~V~iGs~f~~ 368 (496)
T 4fxs_A 351 KAIAAGASCVMVGSMFAG 368 (496)
T ss_dssp HHHHTTCSEEEESTTTTT
T ss_pred HHHHcCCCeEEecHHHhc
Confidence 999999999999998776
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.014 Score=60.49 Aligned_cols=74 Identities=28% Similarity=0.303 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCC-------C-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPL-------G-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~-------~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+.|+.+.+.|+|.|.+ -..+ +.. + ..+.+..|.++++... ||++.|||++.+| +.+
T Consensus 153 e~A~~a~~aGaD~I~V-g~g~---G~~~~tr~~~g~g~p~l~aI~~~~~~~~-PVIAdGGI~~~~d-----------i~k 216 (361)
T 3r2g_A 153 AGADYLASCGADIIKA-GIGG---GSVCSTRIKTGFGVPMLTCIQDCSRADR-SIVADGGIKTSGD-----------IVK 216 (361)
T ss_dssp HHHHHHHHTTCSEEEE-CCSS---SSCHHHHHHHCCCCCHHHHHHHHTTSSS-EEEEESCCCSHHH-----------HHH
T ss_pred HHHHHHHHcCCCEEEE-cCCC---CcCccccccCCccHHHHHHHHHHHHhCC-CEEEECCCCCHHH-----------HHH
Confidence 5688899999998886 2221 110 0 1246777888776555 9999999999877 999
Q ss_pred HHHcCcceeecchhhhcc
Q 045794 383 YFRSGADKISIGSDAVYA 400 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~ 400 (578)
++.+||+.|.+|+..+..
T Consensus 217 ALa~GAd~V~iGr~f~~t 234 (361)
T 3r2g_A 217 ALAFGADFVMIGGMLAGS 234 (361)
T ss_dssp HHHTTCSEEEESGGGTTB
T ss_pred HHHcCCCEEEEChHHhCC
Confidence 999999999999988874
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.007 Score=63.42 Aligned_cols=88 Identities=11% Similarity=0.042 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+.+++|+.+.+.|++.||+..-....... . ..+.+.++++++.+.+||...||| +.++ ++++++.|
T Consensus 257 ~~~~la~~le~~Gvd~i~v~~~~~~~~~~-~-~~~~~~~~~vr~~~~iPvi~~G~i-~~~~-----------a~~~l~~g 322 (376)
T 1icp_A 257 LGLYMVESLNKYDLAYCHVVEPRMKTAWE-K-IECTESLVPMRKAYKGTFIVAGGY-DRED-----------GNRALIED 322 (376)
T ss_dssp HHHHHHHHHGGGCCSEEEEECCSCCC--------CCCCSHHHHHHCCSCEEEESSC-CHHH-----------HHHHHHTT
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCCC-c-cccHHHHHHHHHHcCCCEEEeCCC-CHHH-----------HHHHHHCC
Confidence 35788999999999999986421100000 0 012355677888889999999999 7765 99999998
Q ss_pred -cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 388 -ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 388 -a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
||-|.+|..++.| |++++++.+
T Consensus 323 ~aD~V~~gR~~l~~------------P~l~~k~~~ 345 (376)
T 1icp_A 323 RADLVAYGRLFISN------------PDLPKRFEL 345 (376)
T ss_dssp SCSEEEESHHHHHC------------TTHHHHHHH
T ss_pred CCcEEeecHHHHhC------------ccHHHHHHc
Confidence 9999999999985 466777765
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.013 Score=61.25 Aligned_cols=143 Identities=12% Similarity=0.066 Sum_probs=99.2
Q ss_pred HHHHHHHHHcCcce--eecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADK--ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~--vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++++.|... +=+|...-. ..+.++.+.+.+|++ +.+.+|+..
T Consensus 145 ~~~a~~~~~~G~~~~K~KvG~~~~~------------d~~~v~avR~~~g~~-~~l~vDaN~------------------ 193 (368)
T 3q45_A 145 AADAVQIKKNGFEIIKVKVGGSKEL------------DVERIRMIREAAGDS-ITLRIDANQ------------------ 193 (368)
T ss_dssp HHHHHHHHHTTCSEEEEECCSCHHH------------HHHHHHHHHHHHCSS-SEEEEECTT------------------
T ss_pred HHHHHHHHHcCCCeEEEEecCCHHH------------HHHHHHHHHHHhCCC-CeEEEECCC------------------
Confidence 45677788888664 444542211 137788999999865 667788532
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|.. -+..+++++++++++..|= .-....|++.++++++.+++||.+.+.+.+.
T Consensus 194 ----------------~~~~---~~A~~~~~~l~~~~i~~iE-------qP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~ 247 (368)
T 3q45_A 194 ----------------GWSV---ETAIETLTLLEPYNIQHCE-------EPVSRNLYTALPKIRQACRIPIMADESCCNS 247 (368)
T ss_dssp ----------------CBCH---HHHHHHHHHHGGGCCSCEE-------CCBCGGGGGGHHHHHHTCSSCEEESTTCCSH
T ss_pred ----------------CCCh---HHHHHHHHHHhhcCCCEEE-------CCCChhHHHHHHHHHhhCCCCEEEcCCcCCH
Confidence 2322 1356789999998876551 1122236788999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+|++++++...++.+.+--....|-....++.+...+.|++|
T Consensus 248 ~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~ 289 (368)
T 3q45_A 248 FDAERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMPV 289 (368)
T ss_dssp HHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHcCCCCeEEechhhcCCHHHHHHHHHHHHHcCCcE
Confidence 999999975567776654444445445677788888888876
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.013 Score=63.76 Aligned_cols=77 Identities=22% Similarity=0.200 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-------cccEEEeCCccccccCCCCccChHHHHHH
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-------FVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-------~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
.+.|+...+.|++.|.+-.-.+.. .......++.+.++.+.+ .+||.+.|||++-+| +.+
T Consensus 354 ~e~A~~a~~aGad~I~vs~hgG~~--~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~D-----------v~k 420 (511)
T 1kbi_A 354 TEDVIKAAEIGVSGVVLSNHGGRQ--LDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTD-----------VLK 420 (511)
T ss_dssp HHHHHHHHHTTCSEEEECCTTTTS--STTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHH-----------HHH
T ss_pred HHHHHHHHHcCCCEEEEcCCCCcc--CCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHH-----------HHH
Confidence 477999999999988875433321 012245678888888776 799999999999977 889
Q ss_pred HHHcCcceeecchhhhc
Q 045794 383 YFRSGADKISIGSDAVY 399 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~ 399 (578)
++.+||+-|.||+..+.
T Consensus 421 aLalGAdaV~iGr~~l~ 437 (511)
T 1kbi_A 421 ALCLGAKGVGLGRPFLY 437 (511)
T ss_dssp HHHHTCSEEEECHHHHH
T ss_pred HHHcCCCEEEECHHHHH
Confidence 99999999999997775
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.019 Score=60.50 Aligned_cols=142 Identities=8% Similarity=-0.053 Sum_probs=98.4
Q ss_pred HHHHHHHcCcce--e-ecch--hhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeec
Q 045794 379 VASEYFRSGADK--I-SIGS--DAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVT 453 (578)
Q Consensus 379 ~~~~~l~~Ga~~--v-v~gt--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~ 453 (578)
.++++.+.|... + -+|. ....+ ..+.++.+.+.+|++ +.+.+|+..
T Consensus 164 ~a~~~~~~G~~~~K~~k~g~~~~~~~~-----------d~e~v~avR~a~G~d-~~l~vDaN~----------------- 214 (394)
T 3mkc_A 164 LLEKAKAHNIRAVKVCVPIKADWSTKE-----------VAYYLRELRGILGHD-TDMMVDYLY----------------- 214 (394)
T ss_dssp HHHHHHHTTCSEEEEECCTTCCCCHHH-----------HHHHHHHHHHHHCSS-SEEEEECTT-----------------
T ss_pred HHHHHHHcCCCEEEeCccCCCccCHHH-----------HHHHHHHHHHHhCCC-CeEEEeCCC-----------------
Confidence 677888888664 4 4452 11111 137788888999865 566778532
Q ss_pred cCCCCCCCcceEEEEEccc-ccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCC
Q 045794 454 DLGPNGEEYAWYQCTVNGG-REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAG 532 (578)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~ 532 (578)
+| .. -+..+++++++++|+..| +.-...-|++.++++++.+++||++.+.+.
T Consensus 215 -----------------~~~~~---~~A~~~~~~L~~~~i~~i-------EeP~~~~d~~~~~~l~~~~~iPIa~dE~~~ 267 (394)
T 3mkc_A 215 -----------------RFTDW---YEVARLLNSIEDLELYFA-------EATLQHDDLSGHAKLVENTRSRICGAEMST 267 (394)
T ss_dssp -----------------CCCCH---HHHHHHHHHTGGGCCSEE-------ESCSCTTCHHHHHHHHHHCSSCBEECTTCC
T ss_pred -----------------CCCCH---HHHHHHHHHhhhcCCeEE-------ECCCCchhHHHHHHHHhhCCCCEEeCCCCC
Confidence 23 21 135788999999888755 122223389999999999999999999999
Q ss_pred CHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 533 AVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 533 s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+.++++++++...++.+.+--.-..|-.....+.+.....|++|
T Consensus 268 ~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~ 311 (394)
T 3mkc_A 268 TRFEAEEWITKGKVHLLQSDYNRCGGLTELRRITEMATANNVQV 311 (394)
T ss_dssp HHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCEE
Confidence 99999999975557776654444444444667778888888876
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.039 Score=55.64 Aligned_cols=189 Identities=16% Similarity=0.170 Sum_probs=115.9
Q ss_pred CCHHHHHHHHHHcCCCeEEEEec-cc--CCCC----CCCCchhHHHHHHHhhhccccEEEeC--Ccc-ccccCCCCccCh
Q 045794 307 GKPVELARQYYKEGADEISFLNI-TG--FRDF----PLGDLPMLQVLRLTSENVFVPLTVGG--GIR-DFTDANGRHYSS 376 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl-~~--~~~~----~~~~~~~~~~i~~i~~~~~~pi~~gG--Gir-~~~d~~~~~~~~ 376 (578)
-|+.. |+...+.|++-|++-|. -+ ..+- .......+..+++|++.+.+||.++. |-. +.+. -
T Consensus 25 ~D~~s-A~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~-------~ 96 (295)
T 1xg4_A 25 INANH-ALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFN-------V 96 (295)
T ss_dssp SSHHH-HHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHH-------H
T ss_pred cCHHH-HHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCcccCCCHHH-------H
Confidence 46544 88888899999999887 22 1221 11234566778888888899998864 222 2221 2
Q ss_pred HHHHHHHHHcCcceeec-chhh-----------hccchhhhhccccCCchHHHHHHHh--CCCCeEEEEEeccccccCCC
Q 045794 377 LEVASEYFRSGADKISI-GSDA-----------VYAAEDYLKTGVKTGKSSLEQISRV--YGNQAVVVSIDPRRVYITHP 442 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~-gt~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~iv~slD~~~~~~~~~ 442 (578)
.+.++++.++||.-|-| +... +....+++ +.|+.+.+. .+.=.|+.=.|..
T Consensus 97 ~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~--------~~I~Aa~~a~~~~~~~i~aRtda~------- 161 (295)
T 1xg4_A 97 ARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMV--------DRIRAAVDAKTDPDFVIMARTDAL------- 161 (295)
T ss_dssp HHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHH--------HHHHHHHHHCSSTTSEEEEEECCH-------
T ss_pred HHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHH--------HHHHHHHHhccCCCcEEEEecHHh-------
Confidence 56788999999998888 3321 11111111 223333322 1111222211110
Q ss_pred CccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCC
Q 045794 443 NDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVS 522 (578)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ 522 (578)
|... --..++-++.+++.|++.|.+..+ ++.+.++++.+.++
T Consensus 162 -----------------------------~~~g-l~~ai~ra~ay~eAGAd~i~~e~~--------~~~~~~~~i~~~~~ 203 (295)
T 1xg4_A 162 -----------------------------AVEG-LDAAIERAQAYVEAGAEMLFPEAI--------TELAMYRQFADAVQ 203 (295)
T ss_dssp -----------------------------HHHC-HHHHHHHHHHHHHTTCSEEEETTC--------CSHHHHHHHHHHHC
T ss_pred -----------------------------hhcC-HHHHHHHHHHHHHcCCCEEEEeCC--------CCHHHHHHHHHHcC
Confidence 1000 014678899999999999998765 37899999999999
Q ss_pred CcEEEecCC---CCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 523 IPVIASSGA---GAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 523 ipVIasGGi---~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+|++++.-. .-.-...+|.+ +|++.|+++.++..
T Consensus 204 iP~~~N~~~~g~~p~~~~~eL~~-~G~~~v~~~~~~~~ 240 (295)
T 1xg4_A 204 VPILANITEFGATPLFTTDELRS-AHVAMALYPLSAFR 240 (295)
T ss_dssp SCBEEECCSSSSSCCCCHHHHHH-TTCSEEEESSHHHH
T ss_pred CCEEEEecccCCCCCCCHHHHHH-cCCCEEEEChHHHH
Confidence 999876543 22234666664 89999988876653
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.018 Score=54.90 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhcc--ccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVF--VPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~--~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
+|.++. ...+.|+|.+.+. .. ....++.++++++.+. +||.+.|||+ .++ ++++++
T Consensus 110 t~~e~~-~a~~~G~d~v~v~---~t------~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~-----------i~~~~~ 167 (212)
T 2v82_A 110 TATEAF-TALEAGAQALKIF---PS------SAFGPQYIKALKAVLPSDIAVFAVGGVT-PEN-----------LAQWID 167 (212)
T ss_dssp SHHHHH-HHHHTTCSEEEET---TH------HHHCHHHHHHHHTTSCTTCEEEEESSCC-TTT-----------HHHHHH
T ss_pred CHHHHH-HHHHCCCCEEEEe---cC------CCCCHHHHHHHHHhccCCCeEEEeCCCC-HHH-----------HHHHHH
Confidence 666654 4467899987751 10 0123688888888775 9999999998 666 999999
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
+||+.|++||+.+..
T Consensus 168 ~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 168 AGCAGAGLGSDLYRA 182 (212)
T ss_dssp HTCSEEEECTTTCCT
T ss_pred cCCCEEEEChHHhCC
Confidence 999999999988874
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.021 Score=60.09 Aligned_cols=144 Identities=13% Similarity=0.090 Sum_probs=98.3
Q ss_pred HHHHHHHHHc---Ccc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceee
Q 045794 377 LEVASEYFRS---GAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVR 451 (578)
Q Consensus 377 ~~~~~~~l~~---Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~ 451 (578)
.+.++++++. |.. |+=+|......+ .+.++.+.+.+|++ +.+.+|+..
T Consensus 176 ~~~a~~~~~~~~~G~~~iKlKvG~~~~~~d-----------~~~v~avR~a~G~~-~~l~vDaN~--------------- 228 (390)
T 3ugv_A 176 AEAVELKAEGQGTGFKGLKLRMGRDDPAVD-----------IETAEAVWDAVGRD-TALMVDFNQ--------------- 228 (390)
T ss_dssp HHHHHHHHTTCTTCCSEEEEECCCSSHHHH-----------HHHHHHHHHHHCTT-SEEEEECTT---------------
T ss_pred HHHHHHHHHhhhCCCcEEEEecCCCCHHHH-----------HHHHHHHHHHhCCC-CEEEEECCC---------------
Confidence 4566778788 865 444564322221 36788888999865 667788543
Q ss_pred eccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCC
Q 045794 452 VTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGA 531 (578)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi 531 (578)
+|.. -+..+++++++++++..| +.=...-|++.++++++.+++||.+...+
T Consensus 229 -------------------~~~~---~~A~~~~~~l~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~iPIa~dE~~ 279 (390)
T 3ugv_A 229 -------------------GLDM---AEAMHRTRQIDDLGLEWI-------EEPVVYDNFDGYAQLRHDLKTPLMIGENF 279 (390)
T ss_dssp -------------------CCCH---HHHHHHHHHHTTSCCSEE-------ECCSCTTCHHHHHHHHHHCSSCEEECTTC
T ss_pred -------------------CCCH---HHHHHHHHHHHhhCCCEE-------ECCCCcccHHHHHHHHHhcCCCEEeCCCc
Confidence 2322 135678889988887655 11222338999999999999999999999
Q ss_pred CCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 532 GAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 532 ~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.+..|++++++...++.+.+--.-..|-....++.+.++..|++|
T Consensus 280 ~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~ 324 (390)
T 3ugv_A 280 YGPREMHQALQAGACDLVMPDFMRIGGVSGWMRAAGVAGAWGIPM 324 (390)
T ss_dssp CSHHHHHHHHHTTCCSEECCBHHHHTHHHHHHHHHHHHHHHTCCB
T ss_pred CCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEE
Confidence 999999999974456766544333444444566777788888876
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.076 Score=53.11 Aligned_cols=176 Identities=13% Similarity=0.107 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+..++++.-.+.|+..+.+ .. ......++..+..+++|.. -| .+..=.-.+..-...+++.++.
T Consensus 74 ~dI~~lc~eA~~~g~aaVCV-~P-----------~~V~~a~~~L~~s~V~V~t--Vi-gFP~G~~~~~~Kv~Ea~~Ai~~ 138 (288)
T 3oa3_A 74 SQIDVLCAEAKEYGFATVCV-RP-----------DYVSRAVQYLQGTQVGVTC--VI-GFHEGTYSTDQKVSEAKRAMQN 138 (288)
T ss_dssp HHHHHHHHHHHHHTCSEEEE-CG-----------GGHHHHHHHTTTSSCEEEE--EE-STTTSCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCcEEEE-CH-----------HHHHHHHHHcCCCCCeEEE--Ee-CCCCCCCcHHHHHHHHHHHHHc
Confidence 35666777777788887764 22 1245555554444555432 12 2321011233345678889999
Q ss_pred Ccceee--cchhhhcc-chhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 387 GADKIS--IGSDAVYA-AEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 387 Ga~~vv--~gt~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
|||-|- ++-.++.+ +.+.+ .+.|.++.+..+.. ++-.|
T Consensus 139 GAdEIDmVINig~lk~g~~~~v-------~~eI~~V~~a~~~~-~lKVI------------------------------- 179 (288)
T 3oa3_A 139 GASELDMVMNYPWLSEKRYTDV-------FQDIRAVRLAAKDA-ILKVI------------------------------- 179 (288)
T ss_dssp TCSEEEEECCHHHHHTTCHHHH-------HHHHHHHHHHTTTS-EEEEE-------------------------------
T ss_pred CCCEEEEEeehhhhcCCcHHHH-------HHHHHHHHHHhcCC-CceEE-------------------------------
Confidence 999765 55444432 22333 25666776666532 21111
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC-CCC---CHHHHHHHHh--hCCCcEEEecCCCCHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG-KGF---DMDLIKLISD--AVSIPVIASSGAGAVEHF 537 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~-~G~---d~~li~~l~~--~~~ipVIasGGi~s~eDi 537 (578)
+.-.. .++-.+...++...+.|++.|= |+ .|.. .|. |.++++++.+ ...+||.++|||++.+|.
T Consensus 180 -----lEt~~-Lt~eei~~A~~ia~eaGADfVK-TS---TGf~~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edA 249 (288)
T 3oa3_A 180 -----LETSQ-LTADEIIAGCVLSSLAGADYVK-TS---TGFNGPGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDC 249 (288)
T ss_dssp -----CCGGG-CCHHHHHHHHHHHHHTTCSEEE-CC---CSSSSCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHH
T ss_pred -----EECCC-CCHHHHHHHHHHHHHcCCCEEE-cC---CCCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHH
Confidence 11000 0111245567778899998664 44 2221 233 6677777764 247999999999999999
Q ss_pred HHHHHhcCch
Q 045794 538 SDVFRKTNAS 547 (578)
Q Consensus 538 ~~l~~~~G~~ 547 (578)
.++++ .||+
T Consensus 250 l~mi~-aGA~ 258 (288)
T 3oa3_A 250 VKMVR-AGAE 258 (288)
T ss_dssp HHHHH-TTCS
T ss_pred HHHHH-cCCc
Confidence 99996 9998
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.021 Score=60.52 Aligned_cols=147 Identities=11% Similarity=0.014 Sum_probs=99.4
Q ss_pred HHHHHHHHcCcceeec--chhhhc--cchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeec
Q 045794 378 EVASEYFRSGADKISI--GSDAVY--AAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVT 453 (578)
Q Consensus 378 ~~~~~~l~~Ga~~vv~--gt~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~ 453 (578)
+.++++.+.|.+.+=+ |..... +..+ ...+.++.+.+.+|++ +-+.+|+..
T Consensus 185 ~~a~~~~~~Gf~~iKik~g~gp~dg~~~~~-------~die~v~avReavG~d-~~L~vDaN~----------------- 239 (412)
T 3stp_A 185 KEAEEAMKGGYKAFKSRFGYGPKDGMPGMR-------ENLKRVEAVREVIGYD-NDLMLECYM----------------- 239 (412)
T ss_dssp HHHHHHHTTTCSEEEEECCCCGGGHHHHHH-------HHHHHHHHHHHHHCSS-SEEEEECTT-----------------
T ss_pred HHHHHHHHcCCCEEEEecccCcccccchHH-------HHHHHHHHHHHHcCCC-CeEEEECCC-----------------
Confidence 4677788888775443 321000 0000 1247788888999865 667788543
Q ss_pred cCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCC
Q 045794 454 DLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533 (578)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s 533 (578)
+|.. -+..+++++++++|+..| +.-...-|++.++++++.+++||.+.+.+.+
T Consensus 240 -----------------~~~~---~~Ai~~~~~Le~~~i~~i-------EeP~~~~d~~~~~~l~~~~~iPIa~dE~~~~ 292 (412)
T 3stp_A 240 -----------------GWNL---DYAKRMLPKLAPYEPRWL-------EEPVIADDVAGYAELNAMNIVPISGGEHEFS 292 (412)
T ss_dssp -----------------CSCH---HHHHHHHHHHGGGCCSEE-------ECCSCTTCHHHHHHHHHTCSSCEEECTTCCS
T ss_pred -----------------CCCH---HHHHHHHHHHHhcCCCEE-------ECCCCcccHHHHHHHHhCCCCCEEeCCCCCC
Confidence 2321 135678899999988765 1222233899999999999999999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.++++++++...++.+.+--....|.....++.+.....|++|
T Consensus 293 ~~~~~~li~~~a~D~v~ik~~~~GGit~a~kia~~A~a~gi~v 335 (412)
T 3stp_A 293 VIGCAELINRKAVSVLQYDTNRVGGITAAQKINAIAEAAQIPV 335 (412)
T ss_dssp HHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHHHHHHTCCB
T ss_pred HHHHHHHHHcCCCCEEecChhhcCCHHHHHHHHHHHHHcCCEE
Confidence 9999999975557776654444445445667777788888876
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.042 Score=57.22 Aligned_cols=140 Identities=10% Similarity=0.000 Sum_probs=97.5
Q ss_pred HHHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|.+.+=+ |.. .++ ..+.++.+.+.+|++ +.+.+|+..
T Consensus 151 ~~~a~~~~~~Gf~~iKik~g~~-----~~~-------~~e~v~avr~a~g~~-~~l~vDan~------------------ 199 (371)
T 2ps2_A 151 RARVAKYRAKGYKGQSVKISGE-----PVT-------DAKRITAALANQQPD-EFFIVDANG------------------ 199 (371)
T ss_dssp HHHHHHHHTTTCCEEEEECCSC-----HHH-------HHHHHHHHTTTCCTT-CEEEEECTT------------------
T ss_pred HHHHHHHHHhChheEEeecCCC-----HHH-------HHHHHHHHHHhcCCC-CEEEEECCC------------------
Confidence 45677788888775544 321 111 137788888889865 566888643
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHH-HHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCC
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAV-EDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~-~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s 533 (578)
+|.. -+..++++.+ +++++ .| - +. .. |++.++++++.+++||++.+.+.+
T Consensus 200 ----------------~~~~---~~a~~~~~~l~~~~~i-~i--E----~P-~~--~~~~~~~l~~~~~iPI~~dE~~~~ 250 (371)
T 2ps2_A 200 ----------------KLSV---ETALRLLRLLPHGLDF-AL--E----AP-CA--TWRECISLRRKTDIPIIYDELATN 250 (371)
T ss_dssp ----------------BCCH---HHHHHHHHHSCTTCCC-EE--E----CC-BS--SHHHHHHHHTTCCSCEEESTTCCS
T ss_pred ----------------CcCH---HHHHHHHHHHHhhcCC-cC--c----CC-cC--CHHHHHHHHhhCCCCEEeCCCcCC
Confidence 2221 1346777777 77777 32 1 11 22 899999999999999999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+++++++++...++.+.+--.-..|.....++.+..++.|++|
T Consensus 251 ~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~ 293 (371)
T 2ps2_A 251 EMSIVKILADDAAEGIDLKISKAGGLTRGRRQRDICLAAGYSV 293 (371)
T ss_dssp HHHHHHHHHHTCCSEEEEEHHHHTSHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHcCCeE
Confidence 9999999986668888765555555555667778888888876
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.023 Score=59.83 Aligned_cols=144 Identities=11% Similarity=0.131 Sum_probs=99.9
Q ss_pred HHHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|.+.+=+ |....+ + ..+.++.+.+.+|++ +-+.+|+..
T Consensus 180 ~~~a~~~~~~Gf~~vKik~g~~~~~----~-------d~e~v~avR~avG~d-~~l~vDan~------------------ 229 (398)
T 2pp0_A 180 LKNVVISRENGIGGIKLKVGQPNCA----E-------DIRRLTAVREALGDE-FPLMVDANQ------------------ 229 (398)
T ss_dssp HHHHHHHHHTTCSCEEEECCCSCHH----H-------HHHHHHHHHHHHCSS-SCEEEECTT------------------
T ss_pred HHHHHHHHHhCCCeEEEecCCCCHH----H-------HHHHHHHHHHHcCCC-CeEEEECCC------------------
Confidence 35677788888775544 321111 1 137788888888864 556778532
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|.. -+..++++.++++|+..| +.-....|++.++++++.+++||++.+.+.+.
T Consensus 230 ----------------~~~~---~~ai~~~~~l~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~ 283 (398)
T 2pp0_A 230 ----------------QWDR---ETAIRMGRKMEQFNLIWI-------EEPLDAYDIEGHAQLAAALDTPIATGEMLTSF 283 (398)
T ss_dssp ----------------CSCH---HHHHHHHHHHGGGTCSCE-------ECCSCTTCHHHHHHHHHHCSSCEEECTTCCSH
T ss_pred ----------------CCCH---HHHHHHHHHHHHcCCcee-------eCCCChhhHHHHHHHHhhCCCCEEecCCcCCH
Confidence 2321 135788899999888743 12223348999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
++++++++...++.+.+--.-..|-....++.+..++.|++|
T Consensus 284 ~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~~gi~~ 325 (398)
T 2pp0_A 284 REHEQLILGNASDFVQPDAPRVGGISPFLKIMDLAAKHGRKL 325 (398)
T ss_dssp HHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeE
Confidence 999999975557777654433445444667888888888876
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.03 Score=58.86 Aligned_cols=143 Identities=13% Similarity=0.110 Sum_probs=99.4
Q ss_pred HHHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|.+.+=+ |...++. ..+.++.+.+.+|++ +.+.+|+..
T Consensus 170 ~~~a~~~~~~Gf~~iKik~g~~~~~~-----------~~e~v~avr~a~g~~-~~l~vDan~------------------ 219 (392)
T 1tzz_A 170 RGEMRGYLDRGYNVVKMKIGGAPIEE-----------DRMRIEAVLEEIGKD-AQLAVDANG------------------ 219 (392)
T ss_dssp HHHHHHHHTTTCSEEEEECSSSCHHH-----------HHHHHHHHHHHHTTT-CEEEEECTT------------------
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHH-----------HHHHHHHHHHhcCCC-CeEEEECCC------------------
Confidence 35567788888765543 4211111 137788888889865 666788643
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|.. -+..++++.++++++..| +.-....|++.++++++.+++||++.+.+.+.
T Consensus 220 ----------------~~~~---~~a~~~~~~l~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~ 273 (392)
T 1tzz_A 220 ----------------RFNL---ETGIAYAKMLRDYPLFWY-------EEVGDPLDYALQAALAEFYPGPMATGENLFSH 273 (392)
T ss_dssp ----------------CCCH---HHHHHHHHHHTTSCCSEE-------ECCSCTTCHHHHHHHTTTCCSCEEECTTCCSH
T ss_pred ----------------CCCH---HHHHHHHHHHHHcCCCee-------cCCCChhhHHHHHHHHhhCCCCEEECCCCCCH
Confidence 2321 135788888999888754 12222358999999999999999999999999
Q ss_pred HHHHHHHHhc----CchHHhhhhhhccCCCCHHHHHHHHHhCCCe
Q 045794 535 EHFSDVFRKT----NASAALAAGIFHRKEVPIQSVKEHLYKEGIE 575 (578)
Q Consensus 535 eDi~~l~~~~----G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~ 575 (578)
++++++++.. .++.+.+--.-..|-....++.+..++.|++
T Consensus 274 ~~~~~~i~~~~~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~ 318 (392)
T 1tzz_A 274 QDARNLLRYGGMRPDRDWLQFDCALSYGLCEYQRTLEVLKTHGWS 318 (392)
T ss_dssp HHHHHHHHHSCCCTTTCEECCCTTTTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCccCCcEEEECccccCCHHHHHHHHHHHHHCCCC
Confidence 9999999744 4887775444444544566788888888987
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.018 Score=60.71 Aligned_cols=119 Identities=13% Similarity=0.055 Sum_probs=86.4
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +.+.+|+.. +|.. -+..+++++++++|+
T Consensus 188 ~~~v~avR~a~G~d-~~l~vDan~----------------------------------~~~~---~~A~~~~~~L~~~~i 229 (401)
T 3sbf_A 188 LTMFKSLREKYGNQ-FHILHDVHE----------------------------------RLFP---NQAIQFAKEVEQYKP 229 (401)
T ss_dssp HHHHHHHHHHHTTS-SEEEEECTT----------------------------------CSCH---HHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHcCCC-CEEEEECCC----------------------------------CCCH---HHHHHHHHHHHhcCC
Confidence 36788888899865 667788543 2322 135788899999887
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
..| +.-....|++.++++++.+++||.+.+.+.+.++++++++...++.+.+--....|-.....+.+.....
T Consensus 230 ~~i-------EqP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~kia~~A~~~ 302 (401)
T 3sbf_A 230 YFI-------EDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNF 302 (401)
T ss_dssp SCE-------ECSSCTTCGGGHHHHHTTCCCCEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHHHH
T ss_pred CEE-------ECCCChhHHHHHHHHHhhCCCCEEeCCccCCHHHHHHHHhcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 654 1222334788899999999999999999999999999997555777765544445555566677778888
Q ss_pred CCee
Q 045794 573 GIEV 576 (578)
Q Consensus 573 ~i~v 576 (578)
|++|
T Consensus 303 gi~~ 306 (401)
T 3sbf_A 303 GVRI 306 (401)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8876
|
| >3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.019 Score=63.97 Aligned_cols=89 Identities=10% Similarity=0.085 Sum_probs=61.7
Q ss_pred CcEEEEEECCCC-----CHHHHHHHHHHCCCeEEEeCCc---------c--CCCCCCEEEECCCCCchHH----HHHHH-
Q 045794 47 DSVVTLLDYGAG-----NVRSVRNAIRHLGFGIKDVQTP---------E--DILNANRLIFPGVGAFAAA----MDVLN- 105 (578)
Q Consensus 47 ~~~I~vld~~~g-----~~~~i~~~L~~~Gv~v~~v~~~---------~--dl~~~DGlILpGGg~~~~~----~~~l~- 105 (578)
..+|+||-- .| -...+.++|++.|+++.++... . +...||+||||||...... .+.++
T Consensus 537 grKVaILva-dG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~ 615 (688)
T 3ej6_A 537 TLRVGVLST-TKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFP 615 (688)
T ss_dssp TCEEEEECC-SSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSC
T ss_pred CCEEEEEcc-CCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhcc
Confidence 456888743 23 2345678999999999988542 1 1246999999998532100 01111
Q ss_pred hhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 106 KTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 106 ~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.....+.++++.+.+|||-+||-|-++|..+
T Consensus 616 ~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 616 AGRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp TTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 1245678999999999999999999999984
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.018 Score=61.36 Aligned_cols=119 Identities=13% Similarity=0.031 Sum_probs=86.2
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +.+.+|+.. +|.. -+..+++++++++|+
T Consensus 214 ~e~v~avR~a~G~d-~~l~vDaN~----------------------------------~~~~---~~A~~~~~~L~~~~i 255 (425)
T 3vcn_A 214 PKLFERAREVLGWD-VHLLHDVHH----------------------------------RLTP---IEAARLGKDLEPYRL 255 (425)
T ss_dssp HHHHHHHHHHHCSS-SEEEEECTT----------------------------------CCCH---HHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHcCCC-CEEEEECCC----------------------------------CCCH---HHHHHHHHHHHhcCC
Confidence 47788999999865 566778532 2322 135788899999987
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
..|= .-....|++.++++++.+++||++.+.+.+.++++++++...++.+.+--....|-....++.+.....
T Consensus 256 ~~iE-------qP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~ 328 (425)
T 3vcn_A 256 FWLE-------DSVPAENQAGFRLIRQHTTTPLAVGEIFAHVWDAKQLIEEQLIDYLRATVLHAGGITNLKKIAAFADLH 328 (425)
T ss_dssp SEEE-------CCSCCSSTTHHHHHHHHCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHGGG
T ss_pred CEEE-------CCCChhhHHHHHHHHhcCCCCEEeCCCcCCHHHHHHHHHcCCCCeEecChhhcCCHHHHHHHHHHHHHc
Confidence 6551 122233788899999999999999999999999999997445777665444444544466777788888
Q ss_pred CCee
Q 045794 573 GIEV 576 (578)
Q Consensus 573 ~i~v 576 (578)
|++|
T Consensus 329 gi~~ 332 (425)
T 3vcn_A 329 HVKT 332 (425)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8876
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.034 Score=58.23 Aligned_cols=143 Identities=13% Similarity=0.152 Sum_probs=97.0
Q ss_pred HHHHHHHHHcCcce--eecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADK--ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~--vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++++.|... +=+|...-. ..+.++.+.+.+|++ +-+.+|+..
T Consensus 147 ~~~a~~~~~~Gf~~~KlK~g~~~~~------------d~~~v~avR~a~g~~-~~L~vDaN~------------------ 195 (379)
T 3r0u_A 147 IQNIQNGVEANFTAIKVKTGADFNR------------DIQLLKALDNEFSKN-IKFRFDANQ------------------ 195 (379)
T ss_dssp HHHHHHHHHTTCCEEEEECSSCHHH------------HHHHHHHHHHHCCTT-SEEEEECTT------------------
T ss_pred HHHHHHHHHcCCCEEeeecCCCHHH------------HHHHHHHHHHhcCCC-CeEEEeCCC------------------
Confidence 45677788888663 444542111 137788999999865 667788543
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHH--cCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCC
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVED--LGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAG 532 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~--~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~ 532 (578)
+|.. -+...+++.+++ +++..| - .=...-|++.++++++.+++||.+..-+.
T Consensus 196 ----------------~w~~---~~A~~~~~~l~~~~~~l~~i--E-----eP~~~~d~~~~~~l~~~~~iPIa~dE~~~ 249 (379)
T 3r0u_A 196 ----------------GWNL---AQTKQFIEEINKYSLNVEII--E-----QPVKYYDIKAMAEITKFSNIPVVADESVF 249 (379)
T ss_dssp ----------------CCCH---HHHHHHHHHHHTSCCCEEEE--E-----CCSCTTCHHHHHHHHHHCSSCEEESTTCS
T ss_pred ----------------CcCH---HHHHHHHHHHhhcCCCcEEE--E-----CCCCcccHHHHHHHHhcCCCCEEeCCccC
Confidence 2322 135678888888 444322 1 11223479999999999999999999999
Q ss_pred CHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 533 AVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 533 s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+..|++++++...++.+.+--....|-.....+.+.++..|+++
T Consensus 250 ~~~~~~~~i~~~a~d~v~~k~~~~GGi~~~~~ia~~A~~~gi~~ 293 (379)
T 3r0u_A 250 DAKDAERVIDEQACNMINIKLAKTGGILEAQKIKKLADSAGISC 293 (379)
T ss_dssp SHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEE
Confidence 99999999974446666544444445555677778888888876
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.017 Score=61.45 Aligned_cols=119 Identities=10% Similarity=0.081 Sum_probs=86.4
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +.+.+|+.. +|.. -+..+++++++++|+
T Consensus 213 ~e~v~avR~avG~d-~~l~vDaN~----------------------------------~~~~---~~A~~~~~~L~~~~i 254 (424)
T 3v3w_A 213 PDVFAAVRKEFGPD-IHLLHDVHH----------------------------------RLTP---IEAARLGKALEPYHL 254 (424)
T ss_dssp HHHHHHHHHHHCSS-SEEEEECTT----------------------------------CCCH---HHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHcCCC-CcEEEeCCC----------------------------------CCCH---HHHHHHHHHHHhcCC
Confidence 36788888999865 667778532 2322 135788899999987
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
..|= .-....|++.++++++.+++||++.+.+.+.++++++++...++.+.+--....|-....++.+.+...
T Consensus 255 ~~iE-------qP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~GGit~~~~ia~~A~~~ 327 (424)
T 3v3w_A 255 FWME-------DAVPAENQESFKLIRQHTTTPLAVGEVFNSIHDCRELIQNQWIDYIRTTIVHAGGISQMRRIADFASLF 327 (424)
T ss_dssp SEEE-------CCSCCSSTTHHHHHHHHCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTT
T ss_pred CEEE-------CCCChHhHHHHHHHHhhCCCCEEEccCcCCHHHHHHHHHcCCCCeEeecchhcCCHHHHHHHHHHHHHc
Confidence 6551 222234788999999999999999999999999999997445777665444444544566778888888
Q ss_pred CCee
Q 045794 573 GIEV 576 (578)
Q Consensus 573 ~i~v 576 (578)
|++|
T Consensus 328 gi~~ 331 (424)
T 3v3w_A 328 HVRT 331 (424)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8876
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.03 Score=58.40 Aligned_cols=144 Identities=14% Similarity=0.071 Sum_probs=96.4
Q ss_pred HHHHHHHHHc-Ccce--eecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeec
Q 045794 377 LEVASEYFRS-GADK--ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVT 453 (578)
Q Consensus 377 ~~~~~~~l~~-Ga~~--vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~ 453 (578)
.+.++++++. |... +=+|...... ..+.++.+.+.+|++ +.+.+|+..
T Consensus 156 ~~~a~~~~~~~G~~~~K~Kvg~~~~~~-----------d~~~v~avR~~~g~~-~~l~vDan~----------------- 206 (372)
T 3tj4_A 156 LAGSARAVEEDGFTRLKIKVGHDDPNI-----------DIARLTAVRERVDSA-VRIAIDGNG----------------- 206 (372)
T ss_dssp HHHHHHHHHTTCCCEEEEECCCSSHHH-----------HHHHHHHHHHHSCTT-CEEEEECTT-----------------
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCHHH-----------HHHHHHHHHHHcCCC-CcEEeeCCC-----------------
Confidence 4566778888 8764 4445322221 137788999999865 667788543
Q ss_pred cCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCC
Q 045794 454 DLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533 (578)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s 533 (578)
+|.. -+..++++.++++++..| +.-....|++.++++++.+++||.+...+.+
T Consensus 207 -----------------~~~~---~~a~~~~~~l~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~ 259 (372)
T 3tj4_A 207 -----------------KWDL---PTCQRFCAAAKDLDIYWF-------EEPLWYDDVTSHARLARNTSIPIALGEQLYT 259 (372)
T ss_dssp -----------------CCCH---HHHHHHHHHTTTSCEEEE-------ESCSCTTCHHHHHHHHHHCSSCEEECTTCCS
T ss_pred -----------------CCCH---HHHHHHHHHHhhcCCCEE-------ECCCCchhHHHHHHHHhhcCCCEEeCCCccC
Confidence 2321 134667777877765433 1122334899999999999999999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.+|++++++...++.+.+--.-..|-....++.+.....|++|
T Consensus 260 ~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~ 302 (372)
T 3tj4_A 260 VDAFRSFIDAGAVAYVQPDVTRLGGITEYIQVADLALAHRLPV 302 (372)
T ss_dssp HHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEE
Confidence 9999999975556766543333334444566777888888876
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.012 Score=73.34 Aligned_cols=91 Identities=13% Similarity=0.066 Sum_probs=67.4
Q ss_pred HHHHHHHHHHcCCcEE---EEeccCCCCCCCCC-C-----HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH--------
Q 045794 480 AYELAKAVEDLGAGEI---LLNCIDCDGQGKGF-D-----MDLIKLISDAVSIPVIASSGAGAVEHFSDVFR-------- 542 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~i---i~tdi~~dG~~~G~-d-----~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~-------- 542 (578)
....+...++.|++.+ ++++-..-|+. |. | +.++.++++.++|||||+|||++.+++..++.
T Consensus 712 a~~~~~~~~~~g~d~~ii~~~~G~eaGGH~-g~~d~~~~~l~l~~~v~~~~~ipviaaGGi~dg~~~~aaL~g~w~~~~g 790 (2051)
T 2uv8_G 712 AISQVINIAKAHPNFPIALQWTGGRGGGHH-SFEDAHTPMLQMYSKIRRHPNIMLIFGSGFGSADDTYPYLTGEWSTKFD 790 (2051)
T ss_dssp HHHHHHHHHHHSTTSCEEEEECCSSCSEEC-CSCCSSHHHHHHHHHHTTCTTBCCEEESSCCSHHHHTHHHHTCGGGTTT
T ss_pred HHHHHHHHHHhCCCceeEEEEEccCcCCCC-CcccccccHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHccccccccC
Confidence 4566788888899994 44555655654 43 2 34688999999999999999999999999982
Q ss_pred --hcCchHHhhhhhhccCCC--CHHHHHHHHHh
Q 045794 543 --KTNASAALAAGIFHRKEV--PIQSVKEHLYK 571 (578)
Q Consensus 543 --~~G~~gv~vgsa~~~~~~--~~~~~~~~l~~ 571 (578)
.+||+||.+|+.|.-..- .-+.+|+.+-+
T Consensus 791 ~~~lgadGv~~GTrf~~t~Ea~~~~~~K~~iv~ 823 (2051)
T 2uv8_G 791 YPPMPFDGFLFGSRVMIAKEVKTSPDAKKCIAA 823 (2051)
T ss_dssp CCCCCCSCEECSGGGTTSTTSCCCHHHHHHHHT
T ss_pred ccCCCCceeeechHHHhCcccccCHHHHHHHHh
Confidence 389999999998853322 23556765544
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.037 Score=59.05 Aligned_cols=119 Identities=15% Similarity=0.067 Sum_probs=85.2
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +-+.+|+.. +|.. -+...++++++++|+
T Consensus 190 ~e~v~avR~avG~d-~~L~vDan~----------------------------------~~t~---~~A~~~~~~Le~~~i 231 (433)
T 3rcy_A 190 VEFCRKIRAAVGDK-ADLLFGTHG----------------------------------QFTT---AGAIRLGQAIEPYSP 231 (433)
T ss_dssp HHHHHHHHHHHTTS-SEEEECCCS----------------------------------CBCH---HHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhCCC-CeEEEeCCC----------------------------------CCCH---HHHHHHHHHhhhcCC
Confidence 36788888899865 567778532 2322 135678899999987
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
..|= .-...-|++.++++++.+++||++.+.+.+..+++++++...++.+.+--.-..|-.....+.......
T Consensus 232 ~~iE-------eP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d~~~~GGit~~~kia~lA~~~ 304 (433)
T 3rcy_A 232 LWYE-------EPVPPDNVGAMAQVARAVRIPVATGERLTTKAEFAPVLREGAAAILQPALGRAGGIWEMKKVAAMAEVY 304 (433)
T ss_dssp SEEE-------CCSCTTCHHHHHHHHHHSSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHHHHTT
T ss_pred CEEE-------CCCChhhHHHHHHHHhccCCCEEecCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHc
Confidence 6551 112223899999999999999999999999999999997545776654433334444466677778888
Q ss_pred CCee
Q 045794 573 GIEV 576 (578)
Q Consensus 573 ~i~v 576 (578)
|+++
T Consensus 305 gv~~ 308 (433)
T 3rcy_A 305 NAQM 308 (433)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8876
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.035 Score=66.64 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCC---------CCCC-HHHHHHHHhhC-------CCcEEEecCCCCHHHHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQG---------KGFD-MDLIKLISDAV-------SIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~---------~G~d-~~li~~l~~~~-------~ipVIasGGi~s~eDi~~l~ 541 (578)
+..+.++.+.+.|++.|++-.... |+. .|.- ..++.++.+.+ ++|||++|||++..|+.+++
T Consensus 1005 gi~~~A~~a~~AGAD~IvVsG~eG-GTgasp~~~~~~~G~Pt~~aL~ev~~al~~~glr~~VpVIAdGGIrtG~DVakAL 1083 (1479)
T 1ea0_A 1005 GIGTIAAGVAKANADIILISGNSG-GTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAA 1083 (1479)
T ss_dssp THHHHHHHHHHTTCSEEEEECTTC-CCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHH
T ss_pred ChHHHHHHHHHcCCcEEEEcCCCC-CCCCCchhhhcCCchhHHHHHHHHHHHHHHcCCCCCceEEEECCCCCHHHHHHHH
Confidence 456788999999999999865542 221 1232 35666666543 69999999999999999999
Q ss_pred HhcCchHHhhhhhhc
Q 045794 542 RKTNASAALAAGIFH 556 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~ 556 (578)
. +||++|.+|+++.
T Consensus 1084 a-LGAdaV~iGTafL 1097 (1479)
T 1ea0_A 1084 M-LGAEEFGIGTASL 1097 (1479)
T ss_dssp H-TTCSEEECCHHHH
T ss_pred H-cCCCeeeEcHHHH
Confidence 5 9999999999884
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.084 Score=53.73 Aligned_cols=184 Identities=16% Similarity=0.102 Sum_probs=110.1
Q ss_pred HHHHHHHcCCCeEEEEec--c----cCCC-CCCCCchhHHHHHHHhhhc-cccEEEeC--CccccccCCCCccChHHHHH
Q 045794 312 LARQYYKEGADEISFLNI--T----GFRD-FPLGDLPMLQVLRLTSENV-FVPLTVGG--GIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 312 ~a~~~~~~g~~~i~~~Dl--~----~~~~-~~~~~~~~~~~i~~i~~~~-~~pi~~gG--Gir~~~d~~~~~~~~~~~~~ 381 (578)
.|+...+.|++-|++-|. . +..| +.......+..+++|++.+ .+||.++. |-.+.++ -.+.++
T Consensus 51 sA~i~e~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~~PviaD~d~Gyg~~~~-------v~~tv~ 123 (318)
T 1zlp_A 51 SAAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDTGGGGPLN-------VQRFIR 123 (318)
T ss_dssp HHHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECTTCSSSHHH-------HHHHHH
T ss_pred HHHHHHHcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhccCCCEEEeCCCCCCCHHH-------HHHHHH
Confidence 467778899999999884 2 2222 1122345677788898888 99998863 2222222 257789
Q ss_pred HHHHcCcceeec-chhh-----------hccchhhhhccccCCchHHHHHHHhC--CCCeEEEEEeccccccCCCCcccc
Q 045794 382 EYFRSGADKISI-GSDA-----------VYAAEDYLKTGVKTGKSSLEQISRVY--GNQAVVVSIDPRRVYITHPNDVEF 447 (578)
Q Consensus 382 ~~l~~Ga~~vv~-gt~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~iv~slD~~~~~~~~~~~~~~ 447 (578)
++.++||.-|-| +... +....+++ +.|+.+.+.. +.=.|+.=-|...
T Consensus 124 ~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~--------~rI~Aa~~A~~~~~~~I~ARtda~a----------- 184 (318)
T 1zlp_A 124 ELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHA--------LKIAAAREAIGDSDFFLVARTDARA----------- 184 (318)
T ss_dssp HHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHH--------HHHHHHHHHHTTSCCEEEEEECTHH-----------
T ss_pred HHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHH--------HHHHHHHHhcccCCcEEEEeeHHhh-----------
Confidence 999999998887 4332 11011111 2233333222 2222222222110
Q ss_pred ceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEE
Q 045794 448 KAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIA 527 (578)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIa 527 (578)
..| . -..++-++.+++.|++.|.+..+ ++.+.++++.+.+++|+.+
T Consensus 185 ---------------------~~g-l----~~ai~Ra~Ay~eAGAd~i~~e~~--------~~~e~~~~i~~~l~~P~la 230 (318)
T 1zlp_A 185 ---------------------PHG-L----EEGIRRANLYKEAGADATFVEAP--------ANVDELKEVSAKTKGLRIA 230 (318)
T ss_dssp ---------------------HHH-H----HHHHHHHHHHHHTTCSEEEECCC--------CSHHHHHHHHHHSCSEEEE
T ss_pred ---------------------hcC-H----HHHHHHHHHHHHcCCCEEEEcCC--------CCHHHHHHHHHhcCCCEEE
Confidence 000 0 13678899999999999998764 4678999999999999954
Q ss_pred e---cCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 528 S---SGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 528 s---GGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
+ ||-...-+..+|.+ .|+.-|+.+..+.
T Consensus 231 n~~~~g~~~~~~~~eL~~-lGv~~v~~~~~~~ 261 (318)
T 1zlp_A 231 NMIEGGKTPLHTPEEFKE-MGFHLIAHSLTAV 261 (318)
T ss_dssp EECTTSSSCCCCHHHHHH-HTCCEEEECSHHH
T ss_pred EeccCCCCCCCCHHHHHH-cCCeEEEEchHHH
Confidence 3 43222233556654 7888777666544
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.04 Score=54.09 Aligned_cols=82 Identities=20% Similarity=0.124 Sum_probs=56.8
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhh--ccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSEN--VFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~--~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
..++.|+ +...+.|+|.|-+=-+-............++.++++++. ..+|+.+-||| +.++ +.++
T Consensus 142 ~ht~~Ea-~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~n-----------i~~~ 208 (243)
T 3o63_A 142 THDPDQV-AAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQR-----------LPAV 208 (243)
T ss_dssp ECSHHHH-HHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTT-----------HHHH
T ss_pred CCCHHHH-HHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHH-----------HHHH
Confidence 3578774 445568999887633211110000012347888998876 58999999999 6766 9999
Q ss_pred HHcCcceeecchhhhcc
Q 045794 384 FRSGADKISIGSDAVYA 400 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~ 400 (578)
+++||+.|+++++.+..
T Consensus 209 ~~aGa~gvav~sai~~a 225 (243)
T 3o63_A 209 LDAGARRIVVVRAITSA 225 (243)
T ss_dssp HHTTCCCEEESHHHHTC
T ss_pred HHcCCCEEEEeHHHhCC
Confidence 99999999999988863
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0096 Score=61.85 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=99.9
Q ss_pred HHHHHHHHHcCcce--eecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADK--ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~--vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++++.|... +=+|...-. ..+.++.+.+.+|++ +-+.+|+..
T Consensus 145 ~~~a~~~~~~G~~~~K~K~G~~~~~------------d~~~v~avR~~~g~~-~~l~vDan~------------------ 193 (356)
T 3ro6_B 145 LAEAREHLALGFRVLKVKLCGDEEQ------------DFERLRRLHETLAGR-AVVRVDPNQ------------------ 193 (356)
T ss_dssp HHHHHHHHHTTCCEEEEECCSCHHH------------HHHHHHHHHHHHTTS-SEEEEECTT------------------
T ss_pred HHHHHHHHHcCCCEEEEEeCCCHHH------------HHHHHHHHHHHhCCC-CEEEEeCCC------------------
Confidence 45677788888664 444542111 136788888999865 667788543
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|.. -+..++++.++++++..| +.-...-|++.++++++.+++||.+.+-+.+.
T Consensus 194 ----------------~~~~---~~a~~~~~~l~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~ 247 (356)
T 3ro6_B 194 ----------------SYDR---DGLLRLDRLVQELGIEFI-------EQPFPAGRTDWLRALPKAIRRRIAADESLLGP 247 (356)
T ss_dssp ----------------CCCH---HHHHHHHHHHHHTTCCCE-------ECCSCTTCHHHHHTSCHHHHHTEEESTTCCSH
T ss_pred ----------------CCCH---HHHHHHHHHHHhcCCCEE-------ECCCCCCcHHHHHHHHhcCCCCEEeCCcCCCH
Confidence 2322 135788999999988655 11222238999999988889999999999999
Q ss_pred HHHHHHHHhc-CchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKT-NASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~-G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+|++++++.. .++.+.+--....|-....++.+...+.|++|
T Consensus 248 ~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~ 290 (356)
T 3ro6_B 248 ADAFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDL 290 (356)
T ss_dssp HHHHHHHSSSCSCSEEEECHHHHCSHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHhcCCcCCEEEEcccccCCHHHHHHHHHHHHHcCCEE
Confidence 9999999644 57877655555555545667777788888876
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.022 Score=59.36 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=97.3
Q ss_pred HHHHHHHHHc-Ccc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeec
Q 045794 377 LEVASEYFRS-GAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVT 453 (578)
Q Consensus 377 ~~~~~~~l~~-Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~ 453 (578)
.+.++++++. |.. |+=+|...... ..+.++.+.+.+|++ +.+.+|+..
T Consensus 144 ~~~a~~~~~~~G~~~~K~K~g~~~~~~-----------d~~~v~avR~a~g~~-~~l~vDan~----------------- 194 (367)
T 3dg3_A 144 VAEAERIRETYGINTFKVKVGRRPVQL-----------DTAVVRALRERFGDA-IELYVDGNR----------------- 194 (367)
T ss_dssp HHHHHHHHHHHCCCEEEEECCCSSTHH-----------HHHHHHHHHHHHGGG-SEEEEECTT-----------------
T ss_pred HHHHHHHHHhcCccEEEEeeCCChhhh-----------HHHHHHHHHHHhCCC-CEEEEECCC-----------------
Confidence 3567777777 865 34445422211 136788888889865 566788532
Q ss_pred cCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCC
Q 045794 454 DLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533 (578)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s 533 (578)
+|.. -+..++++.++++|+..|= .-....|++.++++++.+++||.+.+.+.+
T Consensus 195 -----------------~~~~---~~a~~~~~~l~~~~i~~iE-------qP~~~~d~~~~~~l~~~~~iPIa~dE~~~~ 247 (367)
T 3dg3_A 195 -----------------GWSA---AESLRAMREMADLDLLFAE-------ELCPADDVLSRRRLVGQLDMPFIADESVPT 247 (367)
T ss_dssp -----------------CSCH---HHHHHHHHHTTTSCCSCEE-------SCSCTTSHHHHHHHHHHCSSCEEECTTCSS
T ss_pred -----------------CCCH---HHHHHHHHHHHHhCCCEEE-------CCCCcccHHHHHHHHHhCCCCEEecCCcCC
Confidence 2322 1356778888888865431 112224799999999999999999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.++++++++...++.+.+--.-. |-....++.+..+..|++|
T Consensus 248 ~~~~~~~i~~~~~d~v~~k~~~~-Git~~~~ia~~A~~~gi~~ 289 (367)
T 3dg3_A 248 PADVTREVLGGSATAISIKTART-GFTGSTRVHHLAEGLGLDM 289 (367)
T ss_dssp HHHHHHHHHHTSCSEEEECHHHH-TTHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHcCCCCEEEeehhhh-hHHHHHHHHHHHHHcCCeE
Confidence 99999998755577766544444 6555667777888888876
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.032 Score=58.68 Aligned_cols=143 Identities=10% Similarity=0.063 Sum_probs=99.5
Q ss_pred HHHHHHHHHcCcce--eecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADK--ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~--vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|... +=+|.. ... ..+.++.+.+.+|++ +.+.+|+..
T Consensus 160 ~~~a~~~~~~G~~~iKlK~g~~-~~~-----------d~~~v~avR~a~g~~-~~l~vDaN~------------------ 208 (392)
T 3ddm_A 160 EDVVARKAAEGYRAFKLKVGFD-DAR-----------DVRNALHVRELLGAA-TPLMADANQ------------------ 208 (392)
T ss_dssp HHHHHHHHHHTCCCEEEECSSC-HHH-----------HHHHHHHHHHHHCSS-SCEEEECTT------------------
T ss_pred HHHHHHHHHcCCCEEEEecCCC-HHH-----------HHHHHHHHHHhcCCC-ceEEEeCCC------------------
Confidence 46788888888664 334531 111 137788888999865 566778533
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCC-HHHHHHHHhhCCCcEEEecCCCC
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFD-MDLIKLISDAVSIPVIASSGAGA 533 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d-~~li~~l~~~~~ipVIasGGi~s 533 (578)
+|.. -+..++++.++++++..|= .-...-| ++.++++++.+++||.+.+.+.+
T Consensus 209 ----------------~~~~---~~A~~~~~~L~~~~i~~iE-------eP~~~~d~~~~~~~l~~~~~iPIa~dE~~~~ 262 (392)
T 3ddm_A 209 ----------------GWDL---PRARQMAQRLGPAQLDWLE-------EPLRADRPAAEWAELAQAAPMPLAGGENIAG 262 (392)
T ss_dssp ----------------CCCH---HHHHHHHHHHGGGCCSEEE-------CCSCTTSCHHHHHHHHHHCSSCEEECTTCCS
T ss_pred ----------------CCCH---HHHHHHHHHHHHhCCCEEE-------CCCCccchHHHHHHHHHhcCCCEEeCCCCCC
Confidence 2322 1356788999999886551 1222336 99999999999999999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.+|++++++...++.+.+--.-..|-.....+.+.++..|++|
T Consensus 263 ~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~ 305 (392)
T 3ddm_A 263 VAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAAGLRY 305 (392)
T ss_dssp HHHHHHHHHHTCEEEECCCTTTTTHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCCEEEeCcchhCCHHHHHHHHHHHHHcCCEE
Confidence 9999999875567777654333344444667788888888876
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.034 Score=58.22 Aligned_cols=84 Identities=12% Similarity=0.058 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+.+++|+.+.+.|++.|++..=.- ... .. + .+ ++++++.+++||...||| +.++ ++++++.|
T Consensus 267 ~~~~la~~l~~~Gvd~i~v~~~~~--~~~-~~-~-~~-~~~ir~~~~iPvi~~G~i-t~~~-----------a~~~l~~g 328 (379)
T 3aty_A 267 LTKHLCKKIEPLSLAYLHYLRGDM--VNQ-QI-G-DV-VAWVRGSYSGVKISNLRY-DFEE-----------ADQQIREG 328 (379)
T ss_dssp HHHHHHHHHGGGCCSEEEEECSCT--TSC-CC-C-CH-HHHHHTTCCSCEEEESSC-CHHH-----------HHHHHHTT
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCc--CCC-Cc-c-HH-HHHHHHHCCCcEEEECCC-CHHH-----------HHHHHHcC
Confidence 457789999999999999864210 011 11 1 25 788888899999999999 7765 99999998
Q ss_pred -cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 388 -ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 388 -a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
||-|.+|..++.| |++.+++.+
T Consensus 329 ~aD~V~igR~~l~~------------P~l~~k~~~ 351 (379)
T 3aty_A 329 KVDAVAFGAKFIAN------------PDLVERAQQ 351 (379)
T ss_dssp SCSEEEESHHHHHC------------TTHHHHHHH
T ss_pred CCeEEEecHHHHhC------------cHHHHHHHc
Confidence 9999999999985 466777765
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.055 Score=56.72 Aligned_cols=143 Identities=13% Similarity=0.110 Sum_probs=99.1
Q ss_pred HHHHHHHHHcCcce--eecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADK--ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~--vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++++.|... +=+|...+..+ .+.++.+.+.+ ++ +-+.+|+..
T Consensus 153 ~~~a~~~~~~G~~~~K~Kvg~~~~~~d-----------~~~v~avR~a~-~~-~~l~vDan~------------------ 201 (385)
T 3i6e_A 153 IALMERLRADGVGLIKLKTGFRDHAFD-----------IMRLELIARDF-PE-FRVRVDYNQ------------------ 201 (385)
T ss_dssp HHHHHHHHHHTCCEEEEECSSSCHHHH-----------HHHHHHHHHHC-TT-SEEEEECTT------------------
T ss_pred HHHHHHHHHcCCCEEEEecCCCCHHHH-----------HHHHHHHHHhC-CC-CeEEEECCC------------------
Confidence 35577778888654 44464323221 36788888888 44 667788543
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|.. -+..+++++++++++..| +.=....|++.++++++.+++||.+..-+.+.
T Consensus 202 ----------------~~~~---~~A~~~~~~L~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~ 255 (385)
T 3i6e_A 202 ----------------GLEI---DEAVPRVLDVAQFQPDFI-------EQPVRAHHFELMARLRGLTDVPLLADESVYGP 255 (385)
T ss_dssp ----------------CCCG---GGHHHHHHHHHTTCCSCE-------ECCSCTTCHHHHHHHHTTCSSCEEESTTCCSH
T ss_pred ----------------CCCH---HHHHHHHHHHHhcCCCEE-------ECCCCcccHHHHHHHHHhCCCCEEEeCCcCCH
Confidence 2332 246789999999987654 12222348999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.|++++++...++.+.+--.-..|-....++.+.+++.|++|
T Consensus 256 ~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~ 297 (385)
T 3i6e_A 256 EDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMA 297 (385)
T ss_dssp HHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCEE
Confidence 999999975557766544444445445667788888888876
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.023 Score=60.48 Aligned_cols=119 Identities=11% Similarity=0.029 Sum_probs=86.9
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +-+.+|+.. +|.. -+...++++++++|+
T Consensus 209 ~e~v~avR~avG~d-~~L~vDaN~----------------------------------~~~~---~~A~~~~~~Le~~~i 250 (422)
T 3tji_A 209 VEMFHALREKYGWK-LHILHDVHE----------------------------------RLFP---QQAVQLAKQLEPFQP 250 (422)
T ss_dssp HHHHHHHHHHHCSS-SEEEEECTT----------------------------------CSCH---HHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHcCCC-CEEEEECCC----------------------------------CCCH---HHHHHHHHHHHhhCC
Confidence 36788888889865 667788543 2322 135788899999887
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
..|= .-....|++.++++++.+++||.+.+.+.+.++++++++...++.+.+--.-..|-.....+.......
T Consensus 251 ~~iE-------qP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~ll~~ga~d~v~~k~~~~GGit~~~kia~lA~a~ 323 (422)
T 3tji_A 251 YFIE-------DILPPQQSAWLEQVRQQSCVPLALGELFNNPAEWHDLIVNRRIDFIRCHVSQIGGITPALKLAHLCQAF 323 (422)
T ss_dssp SEEE-------CCSCGGGGGGHHHHHHHCCCCEEECTTCCSGGGTHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHHHT
T ss_pred CeEE-------CCCChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHhcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 6551 122223788899999999999999999999999999997555777765544455555567788888888
Q ss_pred CCee
Q 045794 573 GIEV 576 (578)
Q Consensus 573 ~i~v 576 (578)
|++|
T Consensus 324 gv~v 327 (422)
T 3tji_A 324 GVRL 327 (422)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8876
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.029 Score=58.91 Aligned_cols=119 Identities=11% Similarity=0.136 Sum_probs=84.4
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +-+.+|+.. +|.. -+..++++.++++++
T Consensus 186 ~e~v~avr~a~G~d-~~l~vD~n~----------------------------------~~~~---~~a~~~~~~l~~~~i 227 (392)
T 2poz_A 186 YRRVKAVRDAAGPE-IELMVDLSG----------------------------------GLTT---DETIRFCRKIGELDI 227 (392)
T ss_dssp HHHHHHHHHHHCTT-SEEEEECTT----------------------------------CSCH---HHHHHHHHHHGGGCE
T ss_pred HHHHHHHHHhcCCC-CEEEEECCC----------------------------------CCCH---HHHHHHHHHHHhcCC
Confidence 47788888889865 666788642 2221 135788888888876
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
..| +.-....|++.++++++.+++||++.+.+.+.++++++++...++.+.+--.-..|-....++.+..++.
T Consensus 228 ~~i-------E~P~~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~ 300 (392)
T 2poz_A 228 CFV-------EEPCDPFDNGALKVISEQIPLPIAVGERVYTRFGFRKIFELQACGIIQPDIGTAGGLMETKKICAMAEAY 300 (392)
T ss_dssp EEE-------ECCSCTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHTTTCCSEECCCTTTSSCHHHHHHHHHHHHTT
T ss_pred CEE-------ECCCCcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 533 1122334899999999999999999999999999999997555777764333333433456777788888
Q ss_pred CCee
Q 045794 573 GIEV 576 (578)
Q Consensus 573 ~i~v 576 (578)
|++|
T Consensus 301 g~~~ 304 (392)
T 2poz_A 301 NMRV 304 (392)
T ss_dssp TCEE
T ss_pred CCeE
Confidence 8876
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.018 Score=61.18 Aligned_cols=119 Identities=10% Similarity=0.036 Sum_probs=86.3
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +.+.+|+.. +|.. -+..+++++++++|+
T Consensus 207 ~~~v~avR~a~G~d-~~l~vDaN~----------------------------------~~~~---~~A~~~~~~L~~~~i 248 (418)
T 3r4e_A 207 PKLFEELRKTYGFD-HHLLHDGHH----------------------------------RYTP---QEAANLGKMLEPYQL 248 (418)
T ss_dssp HHHHHHHHHHHCSS-SEEEEECTT----------------------------------CSCH---HHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHcCCC-CeEEEeCCC----------------------------------CCCH---HHHHHHHHHHHhhCC
Confidence 36788888999865 566778532 2322 145788899999988
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
..|= .-....|++.++++++.+++||++.+.+.+.++++++++...++.+.+--....|-....++.+.....
T Consensus 249 ~~iE-------qP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~ 321 (418)
T 3r4e_A 249 FWLE-------DCTPAENQEAFRLVRQHTVTPLAVGEIFNTIWDAKDLIQNQLIDYIRATVVGAGGLTHLRRIADLASLY 321 (418)
T ss_dssp SEEE-------SCSCCSSGGGGHHHHHHCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHT
T ss_pred CEEE-------CCCCccCHHHHHHHHhcCCCCEEEcCCcCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHc
Confidence 7651 222234788899999999999999999999999999997445777665444444544566777888888
Q ss_pred CCee
Q 045794 573 GIEV 576 (578)
Q Consensus 573 ~i~v 576 (578)
|++|
T Consensus 322 gi~~ 325 (418)
T 3r4e_A 322 QVRT 325 (418)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8876
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.045 Score=57.74 Aligned_cols=142 Identities=11% Similarity=0.005 Sum_probs=98.1
Q ss_pred HHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCC
Q 045794 377 LEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLG 456 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~ 456 (578)
.+.++++++.|...+=+--. ... ..+.++.+.+.+|++ +.+.+|+..
T Consensus 168 ~~~a~~~~~~G~~~iKlKv~-~~~-----------d~~~v~avR~a~G~~-~~L~vDaN~-------------------- 214 (400)
T 3mwc_A 168 IHQVEESLQEGYRRIKIKIK-PGW-----------DVEPLQETRRAVGDH-FPLWTDANS-------------------- 214 (400)
T ss_dssp HHHHHHHHHHTCSCEEEECB-TTB-----------SHHHHHHHHHHHCTT-SCEEEECTT--------------------
T ss_pred HHHHHHHHHcCCCEEEEEeC-cch-----------HHHHHHHHHHhcCCC-CEEEEeCCC--------------------
Confidence 35677788888764333211 111 247788999999865 566778543
Q ss_pred CCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHH
Q 045794 457 PNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEH 536 (578)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eD 536 (578)
+|... + .++++.++++++..| +.=..--|++.++++++.+++||.+..-+.+.+|
T Consensus 215 --------------~w~~~---~-~~~~~~l~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~ 269 (400)
T 3mwc_A 215 --------------SFELD---Q-WETFKAMDAAKCLFH-------EQPLHYEALLDLKELGERIETPICLDESLISSRV 269 (400)
T ss_dssp --------------CCCGG---G-HHHHHHHGGGCCSCE-------ESCSCTTCHHHHHHHHHHSSSCEEESTTCCSHHH
T ss_pred --------------CCCHH---H-HHHHHHHHhcCCCEE-------eCCCChhhHHHHHHHHhhCCCCEEEeCCcCCHHH
Confidence 23322 3 688999999987654 1122223899999999999999999999999999
Q ss_pred HHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 537 FSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 537 i~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
++++++...++.+.+--.-..|-....++.+.....|+++
T Consensus 270 ~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~ 309 (400)
T 3mwc_A 270 AEFVAKLGISNIWNIKIQRVGGLLEAIKIYKIATDNGIKL 309 (400)
T ss_dssp HHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHhcCCCCEEEEcchhhCCHHHHHHHHHHHHHcCCEE
Confidence 9999975556766544444455445677778888888876
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=95.44 E-value=0.047 Score=57.03 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=97.6
Q ss_pred HHHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|.+.+=+ |....+ + ..+.++.+.+.+|++ +.+.+|+..
T Consensus 150 ~~~a~~~~~~Gf~~iKik~g~~~~~----~-------~~e~v~avr~a~g~~-~~l~vDan~------------------ 199 (378)
T 2qdd_A 150 LGLIAEAAAQGYRTHSAKIGGSDPA----Q-------DIARIEAISAGLPDG-HRVTFDVNR------------------ 199 (378)
T ss_dssp HHHHHHHHHHTCCEEEEECCSSCHH----H-------HHHHHHHHHHSCCTT-CEEEEECTT------------------
T ss_pred HHHHHHHHHHhhhheeecCCCCChH----H-------HHHHHHHHHHHhCCC-CEEEEeCCC------------------
Confidence 35677788888775544 421111 1 137788888889865 667888642
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|.. -+..++++.++ +++ .| +.-.. |++.++++++.+++||++.+.+.+.
T Consensus 200 ----------------~~~~---~~a~~~~~~l~-~~i-~i-------EqP~~--d~~~~~~l~~~~~iPI~~dE~~~~~ 249 (378)
T 2qdd_A 200 ----------------AWTP---AIAVEVLNSVR-ARD-WI-------EQPCQ--TLDQCAHVARRVANPIMLDECLHEF 249 (378)
T ss_dssp ----------------CCCH---HHHHHHHTSCC-CCC-EE-------ECCSS--SHHHHHHHHTTCCSCEEECTTCCSH
T ss_pred ----------------CCCH---HHHHHHHHHhC-CCc-EE-------EcCCC--CHHHHHHHHHhCCCCEEECCCcCCH
Confidence 1221 12456666666 666 22 12222 9999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
++++++++...++.+.+--.-..|.....++.+.+++.|+++
T Consensus 250 ~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~g~~~ 291 (378)
T 2qdd_A 250 SDHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQM 291 (378)
T ss_dssp HHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCeE
Confidence 999999976678888876666666666777888888888876
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.028 Score=59.14 Aligned_cols=76 Identities=20% Similarity=0.214 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCC--CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGF--DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~--d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
...+.++.+.+.|++.+.++....-....++ +++.++.+++.+++||++ ||+.++++++++.+ .|++++.+|+.-|
T Consensus 166 ~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~-ggi~t~e~a~~~~~-~Gad~i~vg~Gg~ 243 (393)
T 2qr6_A 166 NVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPVIA-GGVNDYTTALHMMR-TGAVGIIVGGGEN 243 (393)
T ss_dssp THHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHCSSCEEE-ECCCSHHHHHHHHT-TTCSEEEESCCSC
T ss_pred cHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhcCCCEEE-CCcCCHHHHHHHHH-cCCCEEEECCCcc
Confidence 3577888888999998876532211112222 667788898889999999 78999999999985 9999999977433
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.026 Score=59.44 Aligned_cols=143 Identities=17% Similarity=0.165 Sum_probs=98.2
Q ss_pred HHHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|.+.+=+ |.. .++ ..+.++.+.+.+|++ +.+.+|+..
T Consensus 150 ~~~a~~~~~~Gf~~vKik~g~~-----~~~-------~~e~v~avR~a~g~d-~~l~vDan~------------------ 198 (397)
T 2qde_A 150 AEEALAVLREGFHFVKLKAGGP-----LKA-------DIAMVAEVRRAVGDD-VDLFIDING------------------ 198 (397)
T ss_dssp HHHHHHHHHHTCSCEEEECCSC-----HHH-------HHHHHHHHHHHHCTT-SCEEEECTT------------------
T ss_pred HHHHHHHHHhhhhheeecccCC-----HHH-------HHHHHHHHHHhhCCC-CEEEEECCC------------------
Confidence 35677788888775544 421 111 137788888888865 556788532
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|.. -+..++++.++++|+..| +.-....|++.++++++.+++||++.+.+.+.
T Consensus 199 ----------------~~~~---~~a~~~~~~l~~~~i~~i-------EqP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~ 252 (397)
T 2qde_A 199 ----------------AWTY---DQALTTIRALEKYNLSKI-------EQPLPAWDLDGMARLRGKVATPIYADESAQEL 252 (397)
T ss_dssp ----------------CCCH---HHHHHHHHHHGGGCCSCE-------ECCSCTTCHHHHHHHHTTCSSCEEESTTCCSH
T ss_pred ----------------CCCH---HHHHHHHHHHHhCCCCEE-------ECCCChhhHHHHHHHHhhCCCCEEEeCCcCCH
Confidence 2321 135678899999988754 12223348999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
++++++++...++.+.+--.-..|-....++.+..++.|+++
T Consensus 253 ~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~ 294 (397)
T 2qde_A 253 HDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPV 294 (397)
T ss_dssp HHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCeE
Confidence 999999975567777654444444444566777778878765
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.057 Score=56.08 Aligned_cols=141 Identities=11% Similarity=0.093 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCC
Q 045794 377 LEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLG 456 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~ 456 (578)
.+.++++.+.|.+.+=+--. .+ ...+.++.+.+.+|++ +.+.+|+..
T Consensus 146 ~~~a~~~~~~Gf~~vKik~~-~~-----------~~~e~v~avr~~~g~~-~~l~vDan~-------------------- 192 (368)
T 1sjd_A 146 LDVVGGYLDEGYVRIKLKIE-PG-----------WDVEPVRAVRERFGDD-VLLQVDANT-------------------- 192 (368)
T ss_dssp HHHHHHHHHHTCSEEEEECB-TT-----------BSHHHHHHHHHHHCTT-SEEEEECTT--------------------
T ss_pred HHHHHHHHHhCccEEEEecC-ch-----------hHHHHHHHHHHhcCCC-ceEEEeccC--------------------
Confidence 35677788888775544211 11 1247888998889875 556788632
Q ss_pred CCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHH
Q 045794 457 PNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEH 536 (578)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eD 536 (578)
+|.. -+ .++++.++++++..| +.-....|++.++++++.+++||.+.+.+.+.++
T Consensus 193 --------------~~~~---~~-~~~~~~l~~~~i~~i-------E~P~~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~ 247 (368)
T 1sjd_A 193 --------------AYTL---GD-APQLARLDPFGLLLI-------EQPLEEEDVLGHAELARRIQTPICLDESIVSARA 247 (368)
T ss_dssp --------------CCCG---GG-HHHHHTTGGGCCSEE-------ECCSCTTCHHHHHHHHTTCSSCEEESTTCCSHHH
T ss_pred --------------CCCH---HH-HHHHHHHHhcCCCeE-------eCCCChhhHHHHHHHHHhCCCCEEECCCcCCHHH
Confidence 2322 24 788888999988754 1223335899999999999999999999999999
Q ss_pred HHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCe
Q 045794 537 FSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIE 575 (578)
Q Consensus 537 i~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~ 575 (578)
++++++...++.+.+--.-..|-....++.+..++.|++
T Consensus 248 ~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~ 286 (368)
T 1sjd_A 248 AADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIP 286 (368)
T ss_dssp HHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCc
Confidence 999997555776664322233433356777788888887
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.05 Score=56.51 Aligned_cols=122 Identities=16% Similarity=0.084 Sum_probs=81.4
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCC-CCCHHHHHHHHHHcC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGR-PIGAYELAKAVEDLG 491 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~e~~~~~~~~G 491 (578)
.|.++.+.+..|++.|.+=|..... +.|+.... ......+++.+.+.|
T Consensus 206 ~Eii~avr~~vg~~~v~vRls~~~~-------------------------------~~g~~~~~~~~~~~~~~~~~~~~~ 254 (358)
T 4a3u_A 206 KDVTERVIATIGKERTAVRLSPNGE-------------------------------IQGTVDSHPEQVFIPAAKMLSDLD 254 (358)
T ss_dssp HHHHHHHHHHHCGGGEEEEECCSSC-------------------------------BTTBCCSSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCccceEEEeccCcc-------------------------------cCCCcccchHHHHHHHHHhhhccC
Confidence 4888999999998876553332110 12221111 112356788899999
Q ss_pred CcEEEEeccCCCCCCC-CCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 492 AGEILLNCIDCDGQGK-GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 492 ~~~ii~tdi~~dG~~~-G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
++.+-+..-..++... +...++.+++++.+..||++ ||+.+++...+++++..||.|.+|+++...+.-...++
T Consensus 255 ~~~i~~~~~~~~~~~~~~~~~~~a~~ik~~~~~~v~~-~g~~~~~~ae~~l~~G~aD~V~~gR~~ladPdlp~k~~ 329 (358)
T 4a3u_A 255 IAFLGMREGAVDGTFGKTDQPKLSPEIRKVFKPPLVL-NQDYTFETAQAALDSGVADAISFGRPFIGNPDLPRRFF 329 (358)
T ss_dssp CSEEEEECCBTTCSSSBCSSCCCHHHHHHHCCSCEEE-ESSCCHHHHHHHHHHTSCSEEEESHHHHHCTTHHHHHH
T ss_pred ccccccccccccCcccccccHHHHHHHHHhcCCcEEE-eCCCCHHHHHHHHHcCCceEeHhhHHHHhChhHHHHHH
Confidence 9988776544444432 33445667777878877775 55679999999997555999999999988876555554
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.31 Score=48.00 Aligned_cols=187 Identities=14% Similarity=0.140 Sum_probs=114.7
Q ss_pred HHHHHHHHcCCCeEEEEec--c---cCCCC-CCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 311 ELARQYYKEGADEISFLNI--T---GFRDF-PLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl--~---~~~~~-~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
-.|+.+.+.|++-|++-|. . +..+. .......+..+++|++.+.+||.++.=-. +.+ +| .+.++++.
T Consensus 31 ~sA~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~~~pviaD~~~G-yg~-----~~-~~~~~~l~ 103 (255)
T 2qiw_A 31 WSAGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAVSIPVSVDVESG-YGL-----SP-ADLIAQIL 103 (255)
T ss_dssp HHHHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHCSSCEEEECTTC-TTC-----CH-HHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcCCCCEEeccCCC-cCc-----HH-HHHHHHHH
Confidence 3577788899999999873 2 22221 12234566778888888899998764322 221 34 88999999
Q ss_pred HcCcceeec-chhh-----hccchhhhhccccCCchHHHHHHHh---CCCC-eEEEEEeccccccCCCCccccceeeecc
Q 045794 385 RSGADKISI-GSDA-----VYAAEDYLKTGVKTGKSSLEQISRV---YGNQ-AVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 385 ~~Ga~~vv~-gt~~-----~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~-~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
++||.-|-| |..- +.+..+++ +.|+.+.+. -|.. .|+.=.|..-
T Consensus 104 ~aGa~gv~iEd~~~~~~k~l~~~~e~~--------~~I~a~~~a~~~~g~~~~v~aRtd~~~------------------ 157 (255)
T 2qiw_A 104 EAGAVGINVEDVVHSEGKRVREAQEHA--------DYIAAARQAADVAGVDVVINGRTDAVK------------------ 157 (255)
T ss_dssp HTTCCEEEECSEEGGGTTEECCHHHHH--------HHHHHHHHHHHHHTCCCEEEEEECHHH------------------
T ss_pred HcCCcEEEECCCCCCCCCcccCHHHHH--------HHHHHHHHHHHhcCCCeEEEEEechhh------------------
Confidence 999998888 4321 11111222 344444443 1222 3444444310
Q ss_pred CCCCCCCcceEEEEEccccc--CCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCC
Q 045794 455 LGPNGEEYAWYQCTVNGGRE--GRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAG 532 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~--~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~ 532 (578)
.|+.. ..--..++-++.+++.|++.|++..+ ++.++++++.+.+++|+-+..+-+
T Consensus 158 ---------------~g~~~~~~~~~~ai~ra~a~~eAGAd~i~~e~~--------~~~~~~~~i~~~~~~P~n~~~~~~ 214 (255)
T 2qiw_A 158 ---------------LGADVFEDPMVEAIKRIKLMEQAGARSVYPVGL--------STAEQVERLVDAVSVPVNITAHPV 214 (255)
T ss_dssp ---------------HCTTTSSSHHHHHHHHHHHHHHHTCSEEEECCC--------CSHHHHHHHHTTCSSCBEEECBTT
T ss_pred ---------------ccCCcchHHHHHHHHHHHHHHHcCCcEEEEcCC--------CCHHHHHHHHHhCCCCEEEEecCC
Confidence 01100 00114678889999999999998664 457899999999999987653211
Q ss_pred C---HHHHHHHHHhcCchHHhhhhh
Q 045794 533 A---VEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 533 s---~eDi~~l~~~~G~~gv~vgsa 554 (578)
. .-.+.+|.+ .|+.-|+.+..
T Consensus 215 ~~~p~~~~~eL~~-lGv~~v~~~~~ 238 (255)
T 2qiw_A 215 DGHGAGDLATLAG-LGVRRVTFGPL 238 (255)
T ss_dssp TBBTTBCHHHHHH-TTCCEEECTTH
T ss_pred CCCCCCCHHHHHH-cCCCEEEEHHH
Confidence 1 124566654 89998887776
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.041 Score=58.07 Aligned_cols=119 Identities=11% Similarity=0.085 Sum_probs=83.9
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +-+.+|+.. +|.. -+..++++.++++++
T Consensus 205 ~e~v~avR~a~G~d-~~l~vDan~----------------------------------~~~~---~~ai~~~~~l~~~~i 246 (410)
T 2gl5_A 205 EARIAAMREAMGDD-ADIIVEIHS----------------------------------LLGT---NSAIQFAKAIEKYRI 246 (410)
T ss_dssp HHHHHHHHHHHCSS-SEEEEECTT----------------------------------CSCH---HHHHHHHHHHGGGCE
T ss_pred HHHHHHHHHhcCCC-CEEEEECCC----------------------------------CCCH---HHHHHHHHHHHhcCC
Confidence 47788888889865 666688642 2221 135678888888876
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
..| - .-....|++.++++++.+++||++.+.+.+.++++++++...++.+.+--.-..|-....++.+..++.
T Consensus 247 ~~i--E-----~P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~ 319 (410)
T 2gl5_A 247 FLY--E-----EPIHPLNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYANIY 319 (410)
T ss_dssp EEE--E-----CSSCSSCHHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTT
T ss_pred CeE--E-----CCCChhhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 532 1 122335899999999999999999999999999999997555777664332233333356777788888
Q ss_pred CCee
Q 045794 573 GIEV 576 (578)
Q Consensus 573 ~i~v 576 (578)
|+++
T Consensus 320 gi~~ 323 (410)
T 2gl5_A 320 DTTV 323 (410)
T ss_dssp TCEE
T ss_pred CCeE
Confidence 8876
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.15 Score=51.16 Aligned_cols=193 Identities=17% Similarity=0.197 Sum_probs=117.0
Q ss_pred HHHHHHHHcCCCeEEEEecc--cCCCCCCCCchhHHHHHHHhh--hccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 311 ELARQYYKEGADEISFLNIT--GFRDFPLGDLPMLQVLRLTSE--NVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~--~~~~~~~~~~~~~~~i~~i~~--~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+.+..++.+.+ .|+.++ +..- ..+...-..+++.+++ ...+||.+ ..+ |..+++.+++.+++
T Consensus 36 avi~AAee~~sP--vIlq~s~~~~~~-~~g~~~~~~~v~~~A~~~~~~VPVal-----HlD-----Hg~~~e~i~~ai~~ 102 (288)
T 3q94_A 36 AILAAAEEEKSP--VILGVSEGAARH-MTGFKTVVAMVKALIEEMNITVPVAI-----HLD-----HGSSFEKCKEAIDA 102 (288)
T ss_dssp HHHHHHHHTTCC--EEEEEEHHHHHH-TSCHHHHHHHHHHHHHHTTCCSCEEE-----EEE-----EECSHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--EEEECChhhhhh-cCCHHHHHHHHHHHHHhcCCCCcEEE-----ECC-----CCCCHHHHHHHHHc
Confidence 445555566665 444443 2110 0111223466777787 77899864 222 44567889999999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHH---hCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR---VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
|..-|.++.+.+.-.+ |.+..+++.+ .+| +++-.--|.+- |++-
T Consensus 103 GFtSVMiDgS~~p~ee---------Ni~~Tk~vv~~ah~~g-----vsVEaElG~vg------------------G~Ed- 149 (288)
T 3q94_A 103 GFTSVMIDASHHPFEE---------NVETTKKVVEYAHARN-----VSVEAELGTVG------------------GQED- 149 (288)
T ss_dssp TCSEEEECCTTSCHHH---------HHHHHHHHHHHHHTTT-----CEEEEEESBCB------------------CSCS-
T ss_pred CCCeEEEeCCCCCHHH---------HHHHHHHHHHHHHHcC-----CeEEEEeeeec------------------cccC-
Confidence 9999999555443111 3344455443 455 33332222110 1000
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCHHH-HHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAVEH-FSD 539 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~eD-i~~ 539 (578)
. +. ..+..-.++.+..+-+++.|++.+-+.==+.-|.+.| .|+++++++.+.+++|++.-||=+.+++ +++
T Consensus 150 --~--~~-~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~v~vpLVlHGgSG~~~e~i~~ 224 (288)
T 3q94_A 150 --D--VI-AEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEK 224 (288)
T ss_dssp --S--CG-GGGCBCCCHHHHHHHHHHHCCSEEEECSSCBSSCCSSSCCCCHHHHHHHHHHHCSCEEECCCTTCCHHHHHH
T ss_pred --C--cC-CccccCCCHHHHHHHHHHHCCCEEEEEcCcccCCcCCCCccCHHHHHHHHHhcCCCEEEeCCCCCCHHHHHH
Confidence 0 00 0111234788988889999999887654455566655 5999999999999999999999887765 777
Q ss_pred HHHhcCchHHhhhhhh
Q 045794 540 VFRKTNASAALAAGIF 555 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~ 555 (578)
+.+ .|+..+=|++-+
T Consensus 225 ai~-~Gv~KiNi~Tdl 239 (288)
T 3q94_A 225 AIS-LGTSKINVNTEN 239 (288)
T ss_dssp HHH-TTEEEEEECHHH
T ss_pred HHH-cCCeEEEEChHH
Confidence 774 888777666544
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.033 Score=59.49 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=86.6
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +-+.+|+.. +|.. -+..+++++++++++
T Consensus 227 ~~~v~avR~a~G~d-~~L~vDaN~----------------------------------~~~~---~~A~~~~~~L~~~~i 268 (440)
T 3t6c_A 227 PRLFDHLRNKLGFS-VELLHDAHE----------------------------------RITP---INAIHMAKALEPYQL 268 (440)
T ss_dssp HHHHHHHHHHHCSS-SEEEEECTT----------------------------------CSCH---HHHHHHHHHTGGGCC
T ss_pred HHHHHHHHHhcCCC-CeEEEECCC----------------------------------CCCH---HHHHHHHHHhhhcCC
Confidence 36688888889865 677788543 2322 135678888888887
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
..|= .-...-|++.++++++.+++||.+...+.+.++++++++...++.+.+--.-..|-.....+.+.+...
T Consensus 269 ~~iE-------eP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~ 341 (440)
T 3t6c_A 269 FFLE-------DPVAPENTEWLKMLRQQSSTPIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIGGITPAKKIAIYSELN 341 (440)
T ss_dssp SEEE-------CSSCGGGGGGHHHHHHHCCSCEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHHHT
T ss_pred CEEE-------CCCChhhHHHHHHHHhhcCCCEEeCcccCCHHHHHHHHHcCCccceeechhhhCCHHHHHHHHHHHHHc
Confidence 6551 112223788899999999999999999999999999997555777765544455555567788888888
Q ss_pred CCee
Q 045794 573 GIEV 576 (578)
Q Consensus 573 ~i~v 576 (578)
|++|
T Consensus 342 gi~~ 345 (440)
T 3t6c_A 342 GVRT 345 (440)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8876
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.041 Score=55.07 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
++-++++.+.|++.|.+-. ++.+.++++.+.. .+++.+|||| +++.+.++.+ +|+|.+.+|+..|+-
T Consensus 208 l~ea~eAl~aGaD~I~LDn---------~~~~~l~~av~~~~~~v~ieaSGGI-t~~~i~~~a~-tGVD~IsvGalt~sa 276 (287)
T 3tqv_A 208 LDELNQAIAAKADIVMLDN---------FSGEDIDIAVSIARGKVALEVSGNI-DRNSIVAIAK-TGVDFISVGAITKHI 276 (287)
T ss_dssp HHHHHHHHHTTCSEEEEES---------CCHHHHHHHHHHHTTTCEEEEESSC-CTTTHHHHHT-TTCSEEECSHHHHSB
T ss_pred HHHHHHHHHcCCCEEEEcC---------CCHHHHHHHHHhhcCCceEEEECCC-CHHHHHHHHH-cCCCEEEEChhhcCC
Confidence 3667778889999888744 3446666665544 6899999999 7899999985 999999999999875
Q ss_pred C
Q 045794 559 E 559 (578)
Q Consensus 559 ~ 559 (578)
+
T Consensus 277 ~ 277 (287)
T 3tqv_A 277 K 277 (287)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.037 Score=58.48 Aligned_cols=119 Identities=14% Similarity=0.012 Sum_probs=86.7
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +-+.+|+.. +|.. -+..++++.++++|+
T Consensus 195 ~~~v~avR~a~G~d-~~l~vDan~----------------------------------~~~~---~~A~~~~~~l~~~~i 236 (404)
T 4e5t_A 195 EAFCKQIRAAVGTK-ADLLFGTHG----------------------------------QFTV---SGAKRLARRLEAYDP 236 (404)
T ss_dssp HHHHHHHHHHHGGG-SEEEECCCS----------------------------------CBCH---HHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHcCCC-CeEEEeCCC----------------------------------CcCH---HHHHHHHHHHhhcCC
Confidence 36788888889865 566678532 2322 135778899999988
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
..|= .-...-|++.++++++.+++||.+.+.+.+.++++++++...++.+.+--....|-.....+.+.....
T Consensus 237 ~~iE-------eP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~ 309 (404)
T 4e5t_A 237 LWFE-------EPIPPEKPEDMAEVARYTSIPVATGERLCTKYEFSRVLETGAASILQMNLGRVGGLLEAKKIAAMAECH 309 (404)
T ss_dssp SEEE-------CCSCTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTSSCHHHHHHHHHHHHHT
T ss_pred cEEE-------CCCCcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 6552 122334899999999999999999999999999999997555777665444444545566777888888
Q ss_pred CCee
Q 045794 573 GIEV 576 (578)
Q Consensus 573 ~i~v 576 (578)
|++|
T Consensus 310 gi~~ 313 (404)
T 4e5t_A 310 SAQI 313 (404)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8876
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.075 Score=53.61 Aligned_cols=195 Identities=16% Similarity=0.148 Sum_probs=110.9
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecc------cCCCC-CCCCchhHHHHHHHhhhccccEEEeC--CccccccCCCCccChH
Q 045794 307 GKPVELARQYYKEGADEISFLNIT------GFRDF-PLGDLPMLQVLRLTSENVFVPLTVGG--GIRDFTDANGRHYSSL 377 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~------~~~~~-~~~~~~~~~~i~~i~~~~~~pi~~gG--Gir~~~d~~~~~~~~~ 377 (578)
-|+ -.|+...+.|++-|++-|.. |..|. .......+..+++|++.+.+||.+++ |-.+.+. -.
T Consensus 30 ~D~-~sA~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~-------v~ 101 (298)
T 3eoo_A 30 ITA-YAAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLPLLVDIDTGWGGAFN-------IA 101 (298)
T ss_dssp SSH-HHHHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSHHH-------HH
T ss_pred CCH-HHHHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhcCCeEEEECCCCCCCHHH-------HH
Confidence 355 34666778899999998843 21111 11224556778889888899998753 1112211 24
Q ss_pred HHHHHHHHcCcceeec-chhhhccchhhhhccccC-C-chHHHHHH---Hh-CCCC-eEEEEEeccccccCCCCccccce
Q 045794 378 EVASEYFRSGADKISI-GSDAVYAAEDYLKTGVKT-G-KSSLEQIS---RV-YGNQ-AVVVSIDPRRVYITHPNDVEFKA 449 (578)
Q Consensus 378 ~~~~~~l~~Ga~~vv~-gt~~~~~~~~~~~~~~~~-~-~~~l~~~~---~~-~g~~-~iv~slD~~~~~~~~~~~~~~~~ 449 (578)
+.++++.++||.-|-| +....++-.+. .|+.+ . .++++++. +. -+.+ .|+.=.|...
T Consensus 102 ~~v~~l~~aGaagv~iEDq~~~k~cGh~--~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~------------- 166 (298)
T 3eoo_A 102 RTIRSFIKAGVGAVHLEDQVGQKRCGHR--PGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAA------------- 166 (298)
T ss_dssp HHHHHHHHTTCSEEEEECBCCCCCTTCC--CCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHH-------------
T ss_pred HHHHHHHHhCCeEEEECCCCCCcccCCC--CCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhh-------------
Confidence 6788899999998877 43321110000 00000 0 12233332 11 1222 2222222110
Q ss_pred eeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEe-
Q 045794 450 VRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIAS- 528 (578)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIas- 528 (578)
..| . -+.++-++.+.+.|++.|.+..+ .+.+.++++++.+++|+.++
T Consensus 167 -------------------~~g-l----deai~Ra~ay~~AGAD~if~~~~--------~~~ee~~~~~~~~~~Pl~~n~ 214 (298)
T 3eoo_A 167 -------------------AEG-I----DAAIERAIAYVEAGADMIFPEAM--------KTLDDYRRFKEAVKVPILANL 214 (298)
T ss_dssp -------------------HHH-H----HHHHHHHHHHHHTTCSEEEECCC--------CSHHHHHHHHHHHCSCBEEEC
T ss_pred -------------------hcC-H----HHHHHHHHhhHhcCCCEEEeCCC--------CCHHHHHHHHHHcCCCeEEEe
Confidence 000 0 13567888899999999998775 26789999999999999774
Q ss_pred --cCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 529 --SGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 529 --GGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+|-.-.-...+|.+ .|+.-|+.+..++.
T Consensus 215 ~~~g~tp~~~~~eL~~-lGv~~v~~~~~~~r 244 (298)
T 3eoo_A 215 TEFGSTPLFTLDELKG-ANVDIALYCCGAYR 244 (298)
T ss_dssp CTTSSSCCCCHHHHHH-TTCCEEEECSHHHH
T ss_pred ccCCCCCCCCHHHHHH-cCCeEEEEchHHHH
Confidence 44322234566654 89888887765544
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.041 Score=58.05 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=84.7
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +-+.+|+.. +|.. -+..++++.++++++
T Consensus 202 ~e~v~avR~a~G~d-~~l~vDan~----------------------------------~~~~---~~a~~~~~~l~~~~i 243 (407)
T 2o56_A 202 YDRMAAIRDAVGPD-VDIIAEMHA----------------------------------FTDT---TSAIQFGRMIEELGI 243 (407)
T ss_dssp HHHHHHHHHHHCTT-SEEEEECTT----------------------------------CSCH---HHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhcCCC-CEEEEECCC----------------------------------CCCH---HHHHHHHHHHHhcCC
Confidence 47788888889865 667788632 2221 135788899999888
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
..| +.-....|++.++++++.+++||++.+.+.+.++++++++...++.+.+--.-..|-....++.+..++.
T Consensus 244 ~~i-------E~P~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~~ 316 (407)
T 2o56_A 244 FYY-------EEPVMPLNPAQMKQVADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCGGITEVKKICDMAHVY 316 (407)
T ss_dssp SCE-------ECSSCSSSHHHHHHHHHHCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTT
T ss_pred CEE-------eCCCChhhHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 743 1122335899999999999999999999999999999997555777664333333333356677788888
Q ss_pred CCee
Q 045794 573 GIEV 576 (578)
Q Consensus 573 ~i~v 576 (578)
|++|
T Consensus 317 g~~~ 320 (407)
T 2o56_A 317 DKTV 320 (407)
T ss_dssp TCEE
T ss_pred CCeE
Confidence 8876
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.032 Score=58.75 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=84.4
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +.+.+|+.. +|.. -+..++++.++++++
T Consensus 196 ~e~v~avr~avG~d-~~l~vDan~----------------------------------~~~~---~~ai~~~~~l~~~~i 237 (403)
T 2ox4_A 196 VERVEAIRNAVGPD-VDIIVENHG----------------------------------HTDL---VSAIQFAKAIEEFNI 237 (403)
T ss_dssp HHHHHHHHHHHCTT-SEEEEECTT----------------------------------CSCH---HHHHHHHHHHGGGCE
T ss_pred HHHHHHHHHHhCCC-CeEEEECCC----------------------------------CCCH---HHHHHHHHHHHhhCC
Confidence 47788888889865 667788643 2221 135678888888876
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
..| +.-....|++.++++++.+++||++.+.+.+.++++++++...++.+.+--.-..|-....++.+..++.
T Consensus 238 ~~i-------E~P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~~ 310 (403)
T 2ox4_A 238 FFY-------EEINTPLNPRLLKEAKKKIDIPLASGERIYSRWGFLPFLEDRSIDVIQPDLGTCGGFTEFKKIADMAHIF 310 (403)
T ss_dssp EEE-------ECCSCTTSTHHHHHHHHTCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHHHHHT
T ss_pred CEE-------eCCCChhhHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 543 1122335899999999999999999999999999999997555777764433333433456777788888
Q ss_pred CCee
Q 045794 573 GIEV 576 (578)
Q Consensus 573 ~i~v 576 (578)
|++|
T Consensus 311 g~~~ 314 (403)
T 2ox4_A 311 EVTV 314 (403)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8876
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.034 Score=58.11 Aligned_cols=145 Identities=13% Similarity=0.079 Sum_probs=99.3
Q ss_pred HHHHHHHHHcCcceeec--chh--hhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeee
Q 045794 377 LEVASEYFRSGADKISI--GSD--AVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRV 452 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~--gt~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~ 452 (578)
.+.++++.+.|...+=+ |.. .... ..+.++.+.+.+|++ +.+.+|+..
T Consensus 151 ~~~a~~~~~~Gf~~iKlk~g~~g~~~~~-----------d~~~v~avR~a~g~~-~~l~vDan~---------------- 202 (374)
T 3sjn_A 151 VAIVQGLKDQGFSSIKFGGGVMGDDPDT-----------DYAIVKAVREAAGPE-MEVQIDLAS---------------- 202 (374)
T ss_dssp HHHHHHHHTTTCSEEEEECTTTTSCHHH-----------HHHHHHHHHHHHCSS-SEEEEECTT----------------
T ss_pred HHHHHHHHHcCCCEEEeccCCCCCCHHH-----------HHHHHHHHHHHhCCC-CeEEEECCC----------------
Confidence 46788888889775443 421 1111 137788888889865 667788543
Q ss_pred ccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCC
Q 045794 453 TDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAG 532 (578)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~ 532 (578)
+|... -+..++++.++++|+..|= .-...-|++.++++++.+++||.+.+.+.
T Consensus 203 ------------------~~~d~--~~A~~~~~~l~~~~i~~iE-------qP~~~~~~~~~~~l~~~~~iPIa~dE~~~ 255 (374)
T 3sjn_A 203 ------------------KWHTC--GHSAMMAKRLEEFNLNWIE-------EPVLADSLISYEKLSRQVSQKIAGGESLT 255 (374)
T ss_dssp ------------------TTCSH--HHHHHHHHHSGGGCCSEEE-------CSSCTTCHHHHHHHHHHCSSEEEECTTCC
T ss_pred ------------------CCCCH--HHHHHHHHHhhhcCceEEE-------CCCCcccHHHHHHHHhhCCCCEEeCCCcC
Confidence 23300 1356788889898876551 12222389999999999999999999999
Q ss_pred CHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 533 AVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 533 s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+.++++++++...++.+.+--....|-.....+.+..+..|++|
T Consensus 256 ~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~ 299 (374)
T 3sjn_A 256 TRYEFQEFITKSNADIVQPDITRCGGITEMKKIYDIAQMNGTQL 299 (374)
T ss_dssp HHHHHHHHHHHHCCSEECCBTTTSSHHHHHHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEE
Confidence 99999999975667777644444444444566777777778876
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.047 Score=58.08 Aligned_cols=143 Identities=13% Similarity=0.125 Sum_probs=98.1
Q ss_pred HHHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|.+.+=+ |.. ++ + ..+.++.+.+.+|++ +.+.+|+..
T Consensus 190 ~~~a~~~~~~Gf~~vKik~g~~-~~----~-------d~e~v~avR~avG~d-~~l~vDan~------------------ 238 (428)
T 3bjs_A 190 AEEAQEYIARGYKALKLRIGDA-AR----V-------DIERVRHVRKVLGDE-VDILTDANT------------------ 238 (428)
T ss_dssp HHHHHHHHHHTCSEEEEECCSC-HH----H-------HHHHHHHHHHHHCTT-SEEEEECTT------------------
T ss_pred HHHHHHHHHCCCCEEEECCCCC-HH----H-------HHHHHHHHHHhcCCC-CEEEEECCC------------------
Confidence 45677888888775544 421 11 1 137788888888865 556788643
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCC-CcEEEecCCCC
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVS-IPVIASSGAGA 533 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~-ipVIasGGi~s 533 (578)
+|.. -+..++++.++++|+..| +.-....|++.++++++.++ +||++.+.+.+
T Consensus 239 ----------------~~~~---~eai~~~~~L~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~~iPIa~dE~~~~ 292 (428)
T 3bjs_A 239 ----------------AYTM---ADARRVLPVLAEIQAGWL-------EEPFACNDFASYREVAKITPLVPIAAGENHYT 292 (428)
T ss_dssp ----------------CCCH---HHHHHHHHHHHHTTCSCE-------ECCSCTTCHHHHHHHTTTCSSSCEEECTTCCS
T ss_pred ----------------CCCH---HHHHHHHHHHHhcCCCEE-------ECCCCccCHHHHHHHHHhCCCCcEEcCCCcCC
Confidence 2221 135788899999998743 12223348999999999998 99999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.++++++++...++.+.+--.-..|-....++.+..++.|+++
T Consensus 293 ~~~~~~~i~~~~~d~v~ik~~~~GGitea~~ia~~A~~~gi~~ 335 (428)
T 3bjs_A 293 RFEFGQMLDAGAVQVWQPDLSKCGGITEGIRIAAMASAYRIPI 335 (428)
T ss_dssp HHHHHHHHTTCCEEEECCBTTTSSCHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeE
Confidence 9999999975557776644333334334567777888888876
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.039 Score=58.09 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=97.8
Q ss_pred HHH-HHHHHcCcce--eecchh------hhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccc
Q 045794 378 EVA-SEYFRSGADK--ISIGSD------AVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFK 448 (578)
Q Consensus 378 ~~~-~~~l~~Ga~~--vv~gt~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~ 448 (578)
+.+ +++++.|... +=+|.. ...+ ..+.++.+.+.+|++ +.+.+|+..
T Consensus 145 ~~a~~~~~~~G~~~~KlKvG~~~~~~~~~~~~-----------d~~~v~avR~a~g~~-~~l~vDaN~------------ 200 (393)
T 4dwd_A 145 REVARRVEAEQPAAVKIRWDGDRTRCDVDIPG-----------DIAKARAVRELLGPD-AVIGFDANN------------ 200 (393)
T ss_dssp HHHHHHHHHHCCSEEEEECCCCTTCCSCCHHH-----------HHHHHHHHHHHHCTT-CCEEEECTT------------
T ss_pred HHHHHHHHHcCCCEEEEccCCCCcccccCHHH-----------HHHHHHHHHHHhCCC-CeEEEECCC------------
Confidence 455 7777888664 444542 1221 137788888889865 566778543
Q ss_pred eeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEe
Q 045794 449 AVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIAS 528 (578)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIas 528 (578)
+|.. -+..++++.++++|+..|= .-..--|++.++++++.+++||.+.
T Consensus 201 ----------------------~~~~---~~A~~~~~~L~~~~i~~iE-------qP~~~~d~~~~~~l~~~~~iPIa~d 248 (393)
T 4dwd_A 201 ----------------------GYSV---GGAIRVGRALEDLGYSWFE-------EPVQHYHVGAMGEVAQRLDITVSAG 248 (393)
T ss_dssp ----------------------CCCH---HHHHHHHHHHHHTTCSEEE-------CCSCTTCHHHHHHHHHHCSSEEEBC
T ss_pred ----------------------CCCH---HHHHHHHHHHHhhCCCEEE-------CCCCcccHHHHHHHHhhCCCCEEec
Confidence 2322 1357789999999986551 1222238999999999999999999
Q ss_pred cCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 529 SGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 529 GGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
..+.+.++++++++.. ++.+.+--....|-.....+.+.....|++|
T Consensus 249 E~~~~~~~~~~~i~~~-~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~ 295 (393)
T 4dwd_A 249 EQTYTLQALKDLILSG-VRMVQPDIVKMGGITGMMQCAALAHAHGVEF 295 (393)
T ss_dssp TTCCSHHHHHHHHHHT-CCEECCCTTTTTHHHHHHHHHHHHHHHTCEE
T ss_pred CCcCCHHHHHHHHHcC-CCEEEeCccccCCHHHHHHHHHHHHHcCCEE
Confidence 9999999999998744 8877654444444444567777778888876
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.055 Score=56.37 Aligned_cols=144 Identities=16% Similarity=0.152 Sum_probs=97.7
Q ss_pred HHHHHHHHH-cCcc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeec
Q 045794 377 LEVASEYFR-SGAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVT 453 (578)
Q Consensus 377 ~~~~~~~l~-~Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~ 453 (578)
++.++++++ .|.. |+=+|......+ .+.++.+.+.+|.+ +.+.+|+..
T Consensus 147 ~~~~~~~~~~~G~~~~KiKvg~~~~~~d-----------~~~v~avR~~~g~~-~~l~vDan~----------------- 197 (370)
T 1chr_A 147 LDSAVEMIERRRHNRFKVKLGFRSPQDD-----------LIHMEALSNSLGSK-AYLRVDVNQ----------------- 197 (370)
T ss_dssp HHHHHHHHHTTCCCEEEEECSSSCSHHH-----------HHHHHHHHHHSSTT-CCEEEECTT-----------------
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCHHHH-----------HHHHHHHHHhcCCC-CEEEEECCC-----------------
Confidence 345556666 6754 455564322211 36788888999864 556778543
Q ss_pred cCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCC
Q 045794 454 DLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533 (578)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s 533 (578)
+|.. -+..++++.++++|+..| +.-....|++.++++++.+++||.+..-+.+
T Consensus 198 -----------------~~~~---~~a~~~~~~l~~~~i~~i-------EqP~~~~~~~~~~~l~~~~~iPia~dE~~~~ 250 (370)
T 1chr_A 198 -----------------AWDE---QVASVYIPELEALGVELI-------EQPVGRENTQALRRLSDNNRVAIMADESLST 250 (370)
T ss_dssp -----------------CCCT---THHHHHTHHHHTTTEEEE-------ECCSCTTCHHHHHHHHHHSCSEEEESSSCCS
T ss_pred -----------------CCCH---HHHHHHHHHHHhcCCCEE-------ECCCCcccHHHHHHHHhhCCCCEEeCCCcCC
Confidence 2332 246788999999886543 1223345899999999999999999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.+|++++++...++.+.+--.-..|-....++.+.....|+++
T Consensus 251 ~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~g~~~ 293 (370)
T 1chr_A 251 LASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIAS 293 (370)
T ss_dssp HHHHHHHHTTTSCSEEEECTTTSCSHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeE
Confidence 9999999974557777654444444444566777777778775
|
| >1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.031 Score=63.00 Aligned_cols=88 Identities=9% Similarity=-0.016 Sum_probs=60.6
Q ss_pred CcEEEEEECCCC---CHHHHHHHHHHCCCeEEEeCCc------------------cC--CCCCCEEEECCCCCchHHHHH
Q 045794 47 DSVVTLLDYGAG---NVRSVRNAIRHLGFGIKDVQTP------------------ED--ILNANRLIFPGVGAFAAAMDV 103 (578)
Q Consensus 47 ~~~I~vld~~~g---~~~~i~~~L~~~Gv~v~~v~~~------------------~d--l~~~DGlILpGGg~~~~~~~~ 103 (578)
.++|+|+=++-. -+....+.|+..|+++.++... ++ ...+|+||||||......+
T Consensus 534 ~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l-- 611 (715)
T 1sy7_A 534 SRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETL-- 611 (715)
T ss_dssp TCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHH--
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHhhh--
Confidence 356888865411 2234677899999999887431 11 1358999999973111111
Q ss_pred HHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 104 LNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 104 l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.....+.++|+++.+.++||.+||-|-.+|+.+
T Consensus 612 ~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~A 644 (715)
T 1sy7_A 612 SKNGRALHWIREAFGHLKAIGATGEAVDLVAKA 644 (715)
T ss_dssp HTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHc
Confidence 112257789999999999999999999999983
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.13 Score=48.95 Aligned_cols=80 Identities=13% Similarity=0.147 Sum_probs=55.2
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCC-CcEEEecCCCCH-HHHHHHHHhcCchHHhhhhhhcc
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVS-IPVIASSGAGAV-EHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~-ipVIasGGi~s~-eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+...+....+.|++.+.+... ..+.++++++..+ .++++.|||+.. .++.++.+ .|++.+++||++..
T Consensus 121 v~~~~~~a~~~G~~G~~~~~~---------~~~~i~~lr~~~~~~~~iv~gGI~~~g~~~~~~~~-aGad~vvvGr~I~~ 190 (208)
T 2czd_A 121 TDRFIEVANEIEPFGVIAPGT---------RPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVK-AGADYIIVGRAIYN 190 (208)
T ss_dssp HHHHHHHHHHHCCSEEECCCS---------STHHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHH-HTCSEEEECHHHHT
T ss_pred HHHHHHHHHHhCCcEEEECCC---------ChHHHHHHHHhCCCCeEEEECCCCCCCCCHHHHHH-cCCCEEEEChHHhc
Confidence 456677888899988765432 2345566766665 367899999863 27888885 89999999999987
Q ss_pred CCCCHHHHHHHHH
Q 045794 558 KEVPIQSVKEHLY 570 (578)
Q Consensus 558 ~~~~~~~~~~~l~ 570 (578)
.+- +.+..+.++
T Consensus 191 a~d-p~~~~~~l~ 202 (208)
T 2czd_A 191 APN-PREAAKAIY 202 (208)
T ss_dssp SSS-HHHHHHHHH
T ss_pred CCC-HHHHHHHHH
Confidence 543 444444443
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.055 Score=57.29 Aligned_cols=119 Identities=11% Similarity=0.013 Sum_probs=85.5
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +-+.+|+.. +|.. -+...++++++++|+
T Consensus 188 ~~~v~avR~a~G~d-~~l~vDaN~----------------------------------~~~~---~~A~~~~~~L~~~~i 229 (412)
T 4e4u_A 188 ELFCRRVREAVGSK-ADLLFGTHG----------------------------------QMVP---SSAIRLAKRLEKYDP 229 (412)
T ss_dssp HHHHHHHHHHHTTS-SEEEECCCS----------------------------------CBCH---HHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhCCC-CeEEEECCC----------------------------------CCCH---HHHHHHHHHhhhcCC
Confidence 36788888899865 566678532 2322 135678899999987
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
..|= .-...-|++.++++++.+++||.+.+.+.+.++++++++...++.+.+--.-..|-.....+.+.....
T Consensus 230 ~~iE-------eP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~kia~~A~~~ 302 (412)
T 4e4u_A 230 LWFE-------EPVPPGQEEAIAQVAKHTSIPIATGERLTTKYEFHKLLQAGGASILQLNVARVGGLLEAKKIATLAEVH 302 (412)
T ss_dssp SEEE-------CCSCSSCHHHHHHHHHTCSSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTSHHHHHHHHHHHHHT
T ss_pred cEEE-------CCCChhhHHHHHHHHhhCCCCEEecCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHc
Confidence 6542 112223899999999999999999999999999999997445776664433344544466777788888
Q ss_pred CCee
Q 045794 573 GIEV 576 (578)
Q Consensus 573 ~i~v 576 (578)
|++|
T Consensus 303 gi~v 306 (412)
T 4e4u_A 303 YAQI 306 (412)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8876
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.01 Score=60.07 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--------CCcEEEecCCCCHHHHHHHHHhcCchHHhhhh
Q 045794 482 ELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--------SIPVIASSGAGAVEHFSDVFRKTNASAALAAG 553 (578)
Q Consensus 482 e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--------~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgs 553 (578)
+-++++.+.|++.|-+-. .+.+.++++.+.+ .+|+.++||| +++.+.++.+ +|+|++.+|+
T Consensus 210 ee~~~A~~aGaD~I~ld~---------~~~~~l~~~v~~l~~~~~g~~~v~I~ASGGI-t~~ni~~~~~-~GvD~i~vGs 278 (294)
T 3c2e_A 210 DEATEAIEAGADVIMLDN---------FKGDGLKMCAQSLKNKWNGKKHFLLECSGGL-NLDNLEEYLC-DDIDIYSTSS 278 (294)
T ss_dssp HHHHHHHHHTCSEEECCC------------------------------CCEEEEECCC-CC------CC-CSCSEEECGG
T ss_pred HHHHHHHHcCCCEEEECC---------CCHHHHHHHHHHhcccccCCCCeEEEEECCC-CHHHHHHHHH-cCCCEEEEec
Confidence 345555678999887533 2344555544433 2899999999 8899999985 9999999999
Q ss_pred hhccC
Q 045794 554 IFHRK 558 (578)
Q Consensus 554 a~~~~ 558 (578)
++|.-
T Consensus 279 ~i~~a 283 (294)
T 3c2e_A 279 IHQGT 283 (294)
T ss_dssp GTSSC
T ss_pred hhcCC
Confidence 98863
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.34 Score=51.69 Aligned_cols=182 Identities=17% Similarity=0.158 Sum_probs=113.0
Q ss_pred cEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHH
Q 045794 302 EVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEV 379 (578)
Q Consensus 302 ~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~ 379 (578)
.+.+..+..|+.+. .+.|++-|- ++.-...+ ...+++...++.+.+ ++++...|||++.+|
T Consensus 160 ~LvEvh~~eE~~~A-~~lga~iIG-innr~L~t----~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~ed----------- 222 (452)
T 1pii_A 160 VLTEVSNEEEQERA-IALGAKVVG-INNRDLRD----LSIDLNRTRELAPKLGHNVTVISESGINTYAQ----------- 222 (452)
T ss_dssp EEEEECSHHHHHHH-HHTTCSEEE-EESEETTT----TEECTHHHHHHHHHHCTTSEEEEESCCCCHHH-----------
T ss_pred EEEEeCCHHHHHHH-HHCCCCEEE-EeCCCCCC----CCCCHHHHHHHHHhCCCCCeEEEECCCCCHHH-----------
Confidence 34455678777554 467998554 44333222 144577777777665 578989999999977
Q ss_pred HHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCC
Q 045794 380 ASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNG 459 (578)
Q Consensus 380 ~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (578)
++++.++ ++-|.||++..+. ++. ...++++.. |.-+
T Consensus 223 v~~~~~~-a~avLVGealmr~-~d~--------~~~~~~l~~--~~~K-------------------------------- 258 (452)
T 1pii_A 223 VRELSHF-ANGFLIGSALMAH-DDL--------HAAVRRVLL--GENK-------------------------------- 258 (452)
T ss_dssp HHHHTTT-CSEEEECHHHHTC-SCH--------HHHHHHHHH--CSCE--------------------------------
T ss_pred HHHHHHh-CCEEEEcHHHcCC-cCH--------HHHHHHHHH--Hhcc--------------------------------
Confidence 9999999 9999999998874 221 133444432 2111
Q ss_pred CCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q 045794 460 EEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~ 539 (578)
+= +++-.+-++.+.++|++.+=+.-... .-+-.+.+..+++.+...+..+.-==-.+++.+.+
T Consensus 259 ---------IC------Git~~eda~~a~~~Gad~iGfIf~~~--SpR~V~~~~a~~i~~~~~v~~VgVFvn~~~~~i~~ 321 (452)
T 1pii_A 259 ---------VC------GLTRGQDAKAAYDAGAIYGGLIFVAT--SPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVD 321 (452)
T ss_dssp ---------EC------CCCSHHHHHHHHHHTCSEEEEECCTT--CTTBCCHHHHHHHHHHCCCEEEEEESSCCHHHHHH
T ss_pred ---------cc------CCCcHHHHHHHHhcCCCEEEeecCCC--CCCCCCHHHHHHHHhcCCCCEEEEEeCCCHHHHHH
Confidence 11 34446667788888888876553222 22335677777776665554444444456777777
Q ss_pred HHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 540 VFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
+.+..+.+.|- +|. .-+.+.++
T Consensus 322 ~~~~~~ld~vQ----LHG-~E~~~~~~ 343 (452)
T 1pii_A 322 KAKVLSLAAVQ----LHG-NEEQLYID 343 (452)
T ss_dssp HHHHHTCSEEE----ECS-CCCHHHHH
T ss_pred HHHhcCCCEEE----ECC-CCCHHHHH
Confidence 77666777663 464 34454443
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.053 Score=65.26 Aligned_cols=77 Identities=17% Similarity=0.055 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCC---------CCCC-HHHHHHHHhhC-------CCcEEEecCCCCHHHHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQG---------KGFD-MDLIKLISDAV-------SIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~---------~G~d-~~li~~l~~~~-------~ipVIasGGi~s~eDi~~l~ 541 (578)
+..+.++.+.+.|++.|++-... -|+. .|.- ..++.++.+.+ .+|||++|||++..|+.+++
T Consensus 1040 gi~~~A~~a~kAGAD~IvVsG~e-GGTgasp~~~~~~~GlPt~~aL~ev~~al~~~glr~~IpVIAdGGIrtG~DVakAL 1118 (1520)
T 1ofd_A 1040 GIGTIAAGVAKANADIIQISGHD-GGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAA 1118 (1520)
T ss_dssp THHHHHHHHHHTTCSEEEEECTT-CCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCEEEEeCCC-CccCCCcchhhcCCchhHHHHHHHHHHHHHhcCCCCCceEEEECCCCCHHHHHHHH
Confidence 45678889999999999875543 2331 1232 35666665543 69999999999999999999
Q ss_pred HhcCchHHhhhhhhcc
Q 045794 542 RKTNASAALAAGIFHR 557 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~ 557 (578)
. +||++|.+|+++..
T Consensus 1119 a-LGAdaV~iGTafL~ 1133 (1520)
T 1ofd_A 1119 L-MGAEEYGFGSIAMI 1133 (1520)
T ss_dssp H-TTCSEEECSHHHHH
T ss_pred H-cCCCeeEEcHHHHH
Confidence 5 99999999998743
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.024 Score=59.89 Aligned_cols=77 Identities=26% Similarity=0.239 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCeEEEEecccC-------CCCCCCCchhHHHHHHHhh---hccccEEEeCCccccccCCCCccChHHH
Q 045794 310 VELARQYYKEGADEISFLNITGF-------RDFPLGDLPMLQVLRLTSE---NVFVPLTVGGGIRDFTDANGRHYSSLEV 379 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~-------~~~~~~~~~~~~~i~~i~~---~~~~pi~~gGGir~~~d~~~~~~~~~~~ 379 (578)
.+.|+.+.+.|+|.|.+ -..+- .++. + .+.+..+.++.+ .+++||...|||++.+|
T Consensus 205 ~~~a~~a~~~Gad~I~v-g~~~G~~~~~~~~~~~-g-~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d----------- 270 (404)
T 1eep_A 205 KEAALDLISVGADCLKV-GIGPGSICTTRIVAGV-G-VPQITAICDVYEACNNTNICIIADGGIRFSGD----------- 270 (404)
T ss_dssp HHHHHHHHTTTCSEEEE-CSSCSTTSHHHHHHCC-C-CCHHHHHHHHHHHHTTSSCEEEEESCCCSHHH-----------
T ss_pred HHHHHHHHhcCCCEEEE-CCCCCcCcCccccCCC-C-cchHHHHHHHHHHHhhcCceEEEECCCCCHHH-----------
Confidence 47888899999998877 22110 0011 1 234555555554 56899999999999877
Q ss_pred HHHHHHcCcceeecchhhhcc
Q 045794 380 ASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 380 ~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+.+++.+||+-|.+|+..+..
T Consensus 271 ~~~ala~GAd~V~iG~~~l~~ 291 (404)
T 1eep_A 271 VVKAIAAGADSVMIGNLFAGT 291 (404)
T ss_dssp HHHHHHHTCSEEEECHHHHTB
T ss_pred HHHHHHcCCCHHhhCHHHhcC
Confidence 999999999999999998874
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.13 Score=50.04 Aligned_cols=203 Identities=18% Similarity=0.145 Sum_probs=109.8
Q ss_pred cccccceeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCch
Q 045794 262 KALKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLP 341 (578)
Q Consensus 262 ~~~~~~~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~ 341 (578)
|..|..+.+.+.||.- +.+... + ..+..++.+.-.++|+..+.+ .- .
T Consensus 19 ~~~m~~~~l~~~IDhT--------lL~p~~------------t-~~~i~~lc~eA~~~~~~aVcV-~p-----------~ 65 (239)
T 3ngj_A 19 PGSMDKATLAKYIDHT--------LLKADA------------T-EEQIRKLCSEAAEYKFASVCV-NP-----------T 65 (239)
T ss_dssp ---CCHHHHHTTEEEE--------ECCTTC------------C-HHHHHHHHHHHHHHTCSEEEE-CG-----------G
T ss_pred CCcCCHHHHHhhcCcc--------cCCCCC------------C-HHHHHHHHHHHHhcCCcEEEE-CH-----------H
Confidence 3456555778888865 333321 1 135666777777788887764 22 1
Q ss_pred hHHHHHHHhhhccccEEEeCCccccccCCCCccC--hHHHHHHHHHcCccee--ecchhhhcc-chhhhhccccCCchHH
Q 045794 342 MLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYS--SLEVASEYFRSGADKI--SIGSDAVYA-AEDYLKTGVKTGKSSL 416 (578)
Q Consensus 342 ~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~--~~~~~~~~l~~Ga~~v--v~gt~~~~~-~~~~~~~~~~~~~~~l 416 (578)
.....++..+..+++|.. -|. +. -|..++ -...+++.++.|||-| +++-.++.+ +.+++. +.|
T Consensus 66 ~v~~a~~~L~~s~v~v~t--Vig-FP--~G~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~-------~eI 133 (239)
T 3ngj_A 66 WVPLCAELLKGTGVKVCT--VIG-FP--LGATPSEVKAYETKVAVEQGAEEVDMVINIGMVKAKKYDDVE-------KDV 133 (239)
T ss_dssp GHHHHHHHHTTSSCEEEE--EES-TT--TCCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHH-------HHH
T ss_pred HHHHHHHHhCCCCCeEEE--Eec-cC--CCCCchHHHHHHHHHHHHcCCCEEEEEeehHHhccccHHHHH-------HHH
Confidence 244455544434444322 121 21 122222 2346788899999864 444434332 233332 556
Q ss_pred HHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEE
Q 045794 417 EQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEIL 496 (578)
Q Consensus 417 ~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii 496 (578)
.++.+..+. .++-.| +.-.. .++-.....++.+.+.|++.|=
T Consensus 134 ~~v~~a~~~-~~lKVI------------------------------------lEt~~-Lt~eei~~a~~ia~~aGADfVK 175 (239)
T 3ngj_A 134 KAVVDASGK-ALTKVI------------------------------------IECCY-LTNEEKVEVCKRCVAAGAEYVK 175 (239)
T ss_dssp HHHHHHHTT-SEEEEE------------------------------------CCGGG-SCHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHhcC-CceEEE------------------------------------EecCC-CCHHHHHHHHHHHHHHCcCEEE
Confidence 666666543 222211 11010 0111245566667899998664
Q ss_pred EeccCCCCCC-CCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCch--HHhhh
Q 045794 497 LNCIDCDGQG-KGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNAS--AALAA 552 (578)
Q Consensus 497 ~tdi~~dG~~-~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~--gv~vg 552 (578)
|+. |.. .|..++-++.+++.+ .++|-++|||++.+|+.++++ .|++ |+..|
T Consensus 176 -TST---Gf~~ggAt~~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i~-aGA~riGtS~~ 231 (239)
T 3ngj_A 176 -TST---GFGTHGATPEDVKLMKDTVGDKALVKAAGGIRTFDDAMKMIN-NGASRIGASAG 231 (239)
T ss_dssp -CCC---SSSSCCCCHHHHHHHHHHHGGGSEEEEESSCCSHHHHHHHHH-TTEEEEEESCH
T ss_pred -CCC---CCCCCCCCHHHHHHHHHhhCCCceEEEeCCCCCHHHHHHHHH-hcccceecccH
Confidence 332 322 345555555554433 689999999999999999996 9999 44433
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.03 Score=58.62 Aligned_cols=143 Identities=8% Similarity=0.129 Sum_probs=95.0
Q ss_pred HHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccC
Q 045794 378 EVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDL 455 (578)
Q Consensus 378 ~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~ 455 (578)
+.++++.+.|.+.+=+ |...++ + ..+.++.+.+.+|++ +.+.+|+..
T Consensus 145 ~~a~~~~~~Gf~~vKik~g~~~~~----~-------d~e~v~avR~a~G~d-~~l~vDan~------------------- 193 (382)
T 2gdq_A 145 SNVEAQLKKGFEQIKVKIGGTSFK----E-------DVRHINALQHTAGSS-ITMILDANQ------------------- 193 (382)
T ss_dssp HHHHHHHTTTCCEEEEECSSSCHH----H-------HHHHHHHHHHHHCTT-SEEEEECTT-------------------
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHH----H-------HHHHHHHHHHhhCCC-CEEEEECCC-------------------
Confidence 5677788888775543 321111 1 137788888889865 566688642
Q ss_pred CCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHc-CCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 456 GPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDL-GAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~-G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|... +..++++.++++ |+..| +.-....|++.++++++.+++||++.+.+.+.
T Consensus 194 ---------------~~~~~---~a~~~~~~l~~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~ 248 (382)
T 2gdq_A 194 ---------------SYDAA---AAFKWERYFSEWTNIGWL-------EEPLPFDQPQDYAMLRSRLSVPVAGGENMKGP 248 (382)
T ss_dssp ---------------CCCHH---HHHTTHHHHTTCSCEEEE-------ECCSCSSCHHHHHHHHTTCSSCEEECTTCCSH
T ss_pred ---------------CCCHH---HHHHHHHHHhhccCCeEE-------ECCCCcccHHHHHHHHhhCCCCEEecCCcCCH
Confidence 22211 345677888887 76532 11222348999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
++++++++...++.+.+--.-..|-....++.+..++.|+++
T Consensus 249 ~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~ 290 (382)
T 2gdq_A 249 AQYVPLLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFGVRA 290 (382)
T ss_dssp HHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEE
Confidence 999999975557776643333334333566777778888876
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.012 Score=56.84 Aligned_cols=73 Identities=16% Similarity=0.080 Sum_probs=46.3
Q ss_pred HHHHcCCCeEEEEecccCCCC----CCC---CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 315 QYYKEGADEISFLNITGFRDF----PLG---DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 315 ~~~~~g~~~i~~~Dl~~~~~~----~~~---~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+..+.|++-|.+.-.+++-.| ... -....+.++++.+ ++|+.+||||++.++ ++.+...|
T Consensus 126 ~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~--~~~ii~ggGI~~~~~-----------~~~~~~~g 192 (219)
T 2h6r_A 126 AVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINK--DVKVLCGAGISKGED-----------VKAALDLG 192 (219)
T ss_dssp HHTTTCCSEEEECCCC--------------CSHHHHHHHHHHCT--TCEEEECSSCCSHHH-----------HHHHHTTT
T ss_pred HHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccC--CCeEEEEeCcCcHHH-----------HHHHhhCC
Confidence 334457777777665542111 100 1122233333321 689999999999866 88999999
Q ss_pred cceeecchhhhcc
Q 045794 388 ADKISIGSDAVYA 400 (578)
Q Consensus 388 a~~vv~gt~~~~~ 400 (578)
+|.+++|++.++.
T Consensus 193 aDgvlVGsAi~~~ 205 (219)
T 2h6r_A 193 AEGVLLASGVVKA 205 (219)
T ss_dssp CCCEEESHHHHTC
T ss_pred CCEEEEcHHHhCc
Confidence 9999999999983
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.28 Score=49.34 Aligned_cols=188 Identities=15% Similarity=0.073 Sum_probs=108.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEec--ccCCC----CCCCCchhHHHHHHHhhhccccEEEeC--CccccccCCCCccChHHH
Q 045794 308 KPVELARQYYKEGADEISFLNI--TGFRD----FPLGDLPMLQVLRLTSENVFVPLTVGG--GIRDFTDANGRHYSSLEV 379 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl--~~~~~----~~~~~~~~~~~i~~i~~~~~~pi~~gG--Gir~~~d~~~~~~~~~~~ 379 (578)
|+ -.|+...+.|++-|++-+. ....+ +.......+..+++|++.+.+||.+++ |-.+.++ -.+.
T Consensus 28 D~-~sA~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~-------v~~~ 99 (295)
T 1s2w_A 28 NG-LSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNN-------ARRL 99 (295)
T ss_dssp SH-HHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHH-------HHHH
T ss_pred CH-HHHHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEecCCCCCCCHHH-------HHHH
Confidence 54 3466777789999998853 22211 111234567778899998999998763 2222211 2567
Q ss_pred HHHHHHcCcceeec-chhhh-------------ccchhhhhccccCCchHHHHHHHh--CCCCeEEEEEeccccccCCCC
Q 045794 380 ASEYFRSGADKISI-GSDAV-------------YAAEDYLKTGVKTGKSSLEQISRV--YGNQAVVVSIDPRRVYITHPN 443 (578)
Q Consensus 380 ~~~~l~~Ga~~vv~-gt~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~iv~slD~~~~~~~~~~ 443 (578)
++++.++||.-|-| +.... ....+++ +.|+.+.+. .+.=.|+.=-|..-
T Consensus 100 v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~--------~rI~Aa~~a~~~~~~~i~aRtda~~------- 164 (295)
T 1s2w_A 100 VRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFA--------LKIKACKDSQTDPDFCIVARVEAFI------- 164 (295)
T ss_dssp HHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHH--------HHHHHHHHHCSSTTCEEEEEECTTT-------
T ss_pred HHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHH--------HHHHHHHHhcccCCcEEEEeehHHh-------
Confidence 88999999998887 43211 1001111 223333322 12122222222110
Q ss_pred ccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEec-cCCCCCCCCCCHHHHHHHHhhCC
Q 045794 444 DVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNC-IDCDGQGKGFDMDLIKLISDAVS 522 (578)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~td-i~~dG~~~G~d~~li~~l~~~~~ 522 (578)
....--..++-++.+++.|++.|.+.. + ++.+.++++.+.++
T Consensus 165 -----------------------------a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~--------~~~~~~~~i~~~~~ 207 (295)
T 1s2w_A 165 -----------------------------AGWGLDEALKRAEAYRNAGADAILMHSKK--------ADPSDIEAFMKAWN 207 (295)
T ss_dssp -----------------------------TTCCHHHHHHHHHHHHHTTCSEEEECCCS--------SSSHHHHHHHHHHT
T ss_pred -----------------------------ccccHHHHHHHHHHHHHcCCCEEEEcCCC--------CCHHHHHHHHHHcC
Confidence 000001467889999999999998864 2 34578999998887
Q ss_pred --CcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 523 --IPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 523 --ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
+|++++-+-...-++.+|.+ .|+.-|+.+...+
T Consensus 208 ~~~P~i~~~~~~~~~~~~eL~~-lGv~~v~~~~~~~ 242 (295)
T 1s2w_A 208 NQGPVVIVPTKYYKTPTDHFRD-MGVSMVIWANHNL 242 (295)
T ss_dssp TCSCEEECCSTTTTSCHHHHHH-HTCCEEEECSHHH
T ss_pred CCCCEEEeCCCCCCCCHHHHHH-cCCcEEEEChHHH
Confidence 99998743211123566654 7888877776544
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.23 Score=49.83 Aligned_cols=185 Identities=12% Similarity=0.111 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEec-c-----cCCC-CCCCCchhHHHHHHHhhhccccEEEeC--CccccccCCCCccChHH
Q 045794 308 KPVELARQYYKEGADEISFLNI-T-----GFRD-FPLGDLPMLQVLRLTSENVFVPLTVGG--GIRDFTDANGRHYSSLE 378 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl-~-----~~~~-~~~~~~~~~~~i~~i~~~~~~pi~~gG--Gir~~~d~~~~~~~~~~ 378 (578)
|+ --|+...+.|++-|++-|. - |..| +.......+..+++|++.+.+||.++. |-.+.++ -.+
T Consensus 30 D~-~sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~-------~~~ 101 (287)
T 3b8i_A 30 DP-MSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYGNALN-------VMR 101 (287)
T ss_dssp SH-HHHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSCEEEECTTCSSSHHH-------HHH
T ss_pred CH-HHHHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHH-------HHH
Confidence 44 3577778899999999887 1 2222 122334567778899988999998752 2223222 257
Q ss_pred HHHHHHHcCcceeec-chhhh----------ccchhhhhccccCCchHHHHHHHhC--CCCeEEEEEeccccccCCCCcc
Q 045794 379 VASEYFRSGADKISI-GSDAV----------YAAEDYLKTGVKTGKSSLEQISRVY--GNQAVVVSIDPRRVYITHPNDV 445 (578)
Q Consensus 379 ~~~~~l~~Ga~~vv~-gt~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~iv~slD~~~~~~~~~~~~ 445 (578)
.++++.++||.-|-| +.... .+..+++ +.|+.+.+.- +.=.|+.=-|
T Consensus 102 ~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~--------~~I~aa~~a~~~~~~~i~aRtd------------ 161 (287)
T 3b8i_A 102 TVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGV--------GKIRAALEARVDPALTIIARTN------------ 161 (287)
T ss_dssp HHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHH--------HHHHHHHHHCCSTTSEEEEEEE------------
T ss_pred HHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHH--------HHHHHHHHcCCCCCcEEEEech------------
Confidence 789999999998888 43211 1111121 3344433321 1111111111
Q ss_pred ccceeeeccCCCCCCCcceEEEEEcccccCCC-CCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCc
Q 045794 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRP-IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIP 524 (578)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ip 524 (578)
. .. .+ -..++-++.+++.|++.|.+..+ ++.+.++++.+.+++|
T Consensus 162 -------------------------a-a~-~gl~~ai~Ra~ay~eAGAd~i~~e~~--------~~~~~~~~i~~~~~~P 206 (287)
T 3b8i_A 162 -------------------------A-EL-IDVDAVIQRTLAYQEAGADGICLVGV--------RDFAHLEAIAEHLHIP 206 (287)
T ss_dssp -------------------------T-TT-SCHHHHHHHHHHHHHTTCSEEEEECC--------CSHHHHHHHHTTCCSC
T ss_pred -------------------------h-hh-cCHHHHHHHHHHHHHcCCCEEEecCC--------CCHHHHHHHHHhCCCC
Confidence 1 00 01 13678889999999999998765 4578999999999999
Q ss_pred EEE-ecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 525 VIA-SSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 525 VIa-sGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
++. .||-...-+..+|.+ .|+.-|+.+..++
T Consensus 207 ~ii~~~g~~~~~~~~eL~~-lGv~~v~~~~~~~ 238 (287)
T 3b8i_A 207 LMLVTYGNPQLRDDARLAR-LGVRVVVNGHAAY 238 (287)
T ss_dssp EEEECTTCGGGCCHHHHHH-TTEEEEECCCHHH
T ss_pred EEEeCCCCCCCCCHHHHHH-cCCcEEEEChHHH
Confidence 984 244333334566664 8888777766554
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.055 Score=54.47 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
++-++++.+.|++.|.+-+ .+.+.+++..+.. .+++.+|||| +++.+.++.+ +|+|.+.+|+..|+-
T Consensus 219 lde~~eAl~aGaD~I~LDn---------~~~~~l~~av~~i~~~v~ieaSGGI-~~~~i~~~a~-tGVD~isvG~lt~sa 287 (298)
T 3gnn_A 219 LDQLRTALAHGARSVLLDN---------FTLDMMRDAVRVTEGRAVLEVSGGV-NFDTVRAIAE-TGVDRISIGALTKDV 287 (298)
T ss_dssp HHHHHHHHHTTCEEEEEES---------CCHHHHHHHHHHHTTSEEEEEESSC-STTTHHHHHH-TTCSEEECGGGGTSC
T ss_pred HHHHHHHHHcCCCEEEECC---------CCHHHHHHHHHHhCCCCeEEEEcCC-CHHHHHHHHH-cCCCEEEECCeecCC
Confidence 3456777788998776644 3456666665533 6889999999 7899999985 999999999998875
Q ss_pred C
Q 045794 559 E 559 (578)
Q Consensus 559 ~ 559 (578)
+
T Consensus 288 ~ 288 (298)
T 3gnn_A 288 R 288 (298)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.3 Score=49.08 Aligned_cols=188 Identities=16% Similarity=0.143 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEec--ccCCC----CCCCCchhHHHHHHHhhhccccEEEeC--CccccccCCCCccChHHH
Q 045794 308 KPVELARQYYKEGADEISFLNI--TGFRD----FPLGDLPMLQVLRLTSENVFVPLTVGG--GIRDFTDANGRHYSSLEV 379 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl--~~~~~----~~~~~~~~~~~i~~i~~~~~~pi~~gG--Gir~~~d~~~~~~~~~~~ 379 (578)
|+ -.|+...+.|++-|++-|. ....+ +.......+..+++|++.+.+||.+++ |-.+.++ -.+.
T Consensus 24 D~-~sA~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~-------~~~~ 95 (290)
T 2hjp_A 24 NP-LVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVN-------VHYV 95 (290)
T ss_dssp SH-HHHHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECTTTTSSHHH-------HHHH
T ss_pred CH-HHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHH-------HHHH
Confidence 44 3577788899999999873 22222 112234567778899988999998752 2112222 2577
Q ss_pred HHHHHHcCcceeec-chhh-------------hccchhhhhccccCCchHHHHHHHh--CCCCeEEEEEeccccccCCCC
Q 045794 380 ASEYFRSGADKISI-GSDA-------------VYAAEDYLKTGVKTGKSSLEQISRV--YGNQAVVVSIDPRRVYITHPN 443 (578)
Q Consensus 380 ~~~~l~~Ga~~vv~-gt~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~iv~slD~~~~~~~~~~ 443 (578)
++++.++||.-|-| +... +....+++ +.|+.+.+. -+.=.|+.=-|..-
T Consensus 96 v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~--------~kI~Aa~~a~~~~~~~i~aRtda~~------- 160 (290)
T 2hjp_A 96 VPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQ--------GKIAAATAARADRDFVVIARVEALI------- 160 (290)
T ss_dssp HHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHH--------HHHHHHHHHCSSTTSEEEEEECTTT-------
T ss_pred HHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHH--------HHHHHHHHhcccCCcEEEEeehHhh-------
Confidence 89999999998887 4322 11111111 223333332 12223333222110
Q ss_pred ccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEec-cCCCCCCCCCCHHHHHHHHhhCC
Q 045794 444 DVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNC-IDCDGQGKGFDMDLIKLISDAVS 522 (578)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~td-i~~dG~~~G~d~~li~~l~~~~~ 522 (578)
....--..++-++.+++.|++.|.+.. + ++.+.++++.+.++
T Consensus 161 -----------------------------a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~--------~~~~~~~~i~~~~~ 203 (290)
T 2hjp_A 161 -----------------------------AGLGQQEAVRRGQAYEEAGADAILIHSRQ--------KTPDEILAFVKSWP 203 (290)
T ss_dssp -----------------------------TTCCHHHHHHHHHHHHHTTCSEEEECCCC--------SSSHHHHHHHHHCC
T ss_pred -----------------------------ccccHHHHHHHHHHHHHcCCcEEEeCCCC--------CCHHHHHHHHHHcC
Confidence 000001467888999999999999876 4 34578899999998
Q ss_pred --CcEEEecCCCCHHHHHHHHHhcC-chHHhhhhhhc
Q 045794 523 --IPVIASSGAGAVEHFSDVFRKTN-ASAALAAGIFH 556 (578)
Q Consensus 523 --ipVIasGGi~s~eDi~~l~~~~G-~~gv~vgsa~~ 556 (578)
+|++++-.-...-+..+|. ..| +.-|+.+..+.
T Consensus 204 ~~vP~i~n~~~~~~~~~~eL~-~lG~v~~v~~~~~~~ 239 (290)
T 2hjp_A 204 GKVPLVLVPTAYPQLTEADIA-ALSKVGIVIYGNHAI 239 (290)
T ss_dssp CSSCEEECGGGCTTSCHHHHH-TCTTEEEEEECSHHH
T ss_pred CCCCEEEeccCCCCCCHHHHH-hcCCeeEEEechHHH
Confidence 9999862101112355665 488 77776666544
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.029 Score=60.80 Aligned_cols=76 Identities=26% Similarity=0.288 Sum_probs=54.9
Q ss_pred HHHHHHHHcCCCeEEEEecccC-------CCCCCCCchhHHHHHHHhh---hccccEEEeCCccccccCCCCccChHHHH
Q 045794 311 ELARQYYKEGADEISFLNITGF-------RDFPLGDLPMLQVLRLTSE---NVFVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~-------~~~~~~~~~~~~~i~~i~~---~~~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
+.|+.+.+.|++.|.+ ...+- .++. ..+....+.++.+ .+++||.+.|||++.+| +
T Consensus 290 e~a~~l~~~G~d~I~v-~~~~G~~~~~~~~~~~--g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~d-----------i 355 (494)
T 1vrd_A 290 EGTEALIKAGADAVKV-GVGPGSICTTRVVAGV--GVPQLTAVMECSEVARKYDVPIIADGGIRYSGD-----------I 355 (494)
T ss_dssp HHHHHHHHTTCSEEEE-CSSCSTTCHHHHHHCC--CCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHH-----------H
T ss_pred HHHHHHHHcCCCEEEE-cCCCCccccccccCCC--CccHHHHHHHHHHHHhhcCCCEEEECCcCCHHH-----------H
Confidence 5678888999998876 22110 0000 1234555555544 36899999999999977 9
Q ss_pred HHHHHcCcceeecchhhhcc
Q 045794 381 SEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~~ 400 (578)
.+++.+||+.|.+|+..+..
T Consensus 356 ~kala~GAd~V~iGr~~l~~ 375 (494)
T 1vrd_A 356 VKALAAGAESVMVGSIFAGT 375 (494)
T ss_dssp HHHHHTTCSEEEESHHHHTB
T ss_pred HHHHHcCCCEEEECHHHhcC
Confidence 99999999999999988874
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.18 Score=50.17 Aligned_cols=162 Identities=14% Similarity=0.169 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
..+++.|+.+.+.||+ ++|+.+.............+|+.+.+.+++||.++.- ..+.+++.+++
T Consensus 34 ~~a~~~a~~~v~~GAd---iIDIg~~s~~~eE~~rv~~vi~~l~~~~~~pisIDT~-------------~~~v~~aal~a 97 (271)
T 2yci_X 34 RPIQEWARRQAEKGAH---YLDVNTGPTADDPVRVMEWLVKTIQEVVDLPCCLDST-------------NPDAIEAGLKV 97 (271)
T ss_dssp HHHHHHHHHHHHTTCS---EEEEECCSCSSCHHHHHHHHHHHHHHHCCCCEEEECS-------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC---EEEEcCCcCchhHHHHHHHHHHHHHHhCCCeEEEeCC-------------CHHHHHHHHHh
Confidence 5788899999999998 6788764322212234567788888888999987533 34779999999
Q ss_pred --CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 387 --GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 387 --Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
|++.| ++...... .| ++++ .++++||..-|+...|-+.. |.+
T Consensus 98 ~~Ga~iI--Ndvs~~~d-~~--------~~~~-~~~a~~~~~vv~m~~d~~G~----p~t-------------------- 141 (271)
T 2yci_X 98 HRGHAMI--NSTSADQW-KM--------DIFF-PMAKKYEAAIIGLTMNEKGV----PKD-------------------- 141 (271)
T ss_dssp CCSCCEE--EEECSCHH-HH--------HHHH-HHHHHHTCEEEEESCBTTBC----CCS--------------------
T ss_pred CCCCCEE--EECCCCcc-cc--------HHHH-HHHHHcCCCEEEEecCCCCC----CCC--------------------
Confidence 98744 33222211 01 1333 56678875333322221110 000
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcE--EEEeccCCC-CCCCCCCHHHHHHHHhhC--C---CcEEEe
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGE--ILLNCIDCD-GQGKGFDMDLIKLISDAV--S---IPVIAS 528 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~--ii~tdi~~d-G~~~G~d~~li~~l~~~~--~---ipVIas 528 (578)
.+..--.+.+.++.+.+.|+.. |++=..--- |+....++++++.+.... . .|++.+
T Consensus 142 --------~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gfigk~~~~~~~~l~~l~~~~~~~~p~~p~l~G 205 (271)
T 2yci_X 142 --------ANDRSQLAMELVANADAHGIPMTELYIDPLILPVNVAQEHAVEVLETIRQIKLMANPAPRTVLG 205 (271)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCCTTTSTHHHHHHHHHHHHHTTSSSSCCEEEEE
T ss_pred --------HHHHHHHHHHHHHHHHHCCCCcccEEEecCCCccccCHHHHHHHHHHHHHHHHhCCCCCCEEEe
Confidence 0000002456777888999874 554332211 333344677777775433 3 788774
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.016 Score=55.86 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+| +-++.+.+.|++.+.+. =.++..++..-....++.|+++.. ..+|+.++|||+ .+. +++++++
T Consensus 121 T~-~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~~~l~~i~~~~~-~~~pi~v~GGI~-~~~-----------~~~~~~a 186 (218)
T 3jr2_A 121 TM-QDAKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLSA-LGIELSITGGIV-PED-----------IYLFEGI 186 (218)
T ss_dssp CH-HHHHHHHHTTCCEEEEECCHHHHHHTCCSCHHHHHHHHHHHH-TTCEEEEESSCC-GGG-----------GGGGTTS
T ss_pred CH-HHHHHHHHcCccceeeeeccccccCCCcCCHHHHHHHHHHhC-CCCCEEEECCCC-HHH-----------HHHHHHc
Confidence 46 45666677799976552 111111111112334555666553 478999999996 554 8889999
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
||+.+++||+.++
T Consensus 187 GAd~vvvGsaI~~ 199 (218)
T 3jr2_A 187 KTKTFIAGRALAG 199 (218)
T ss_dssp CEEEEEESGGGSH
T ss_pred CCCEEEEchhhcC
Confidence 9999999998775
|
| >1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.012 Score=59.40 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=38.3
Q ss_pred CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 83 ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 83 l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
..+||+||||||......+ .....+.++|+++.+++++|.+||-|-.+|+.+
T Consensus 143 ~~~yD~livPGG~g~~~~l--~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a 194 (291)
T 1n57_A 143 DSEYAAIFVPGGHGALIGL--PESQDVAAALQWAIKNDRFVISLCHGPAAFLAL 194 (291)
T ss_dssp TCSEEEEEECCSGGGGSSG--GGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGG
T ss_pred cccCCEEEecCCcchhhhh--hhCHHHHHHHHHHHHcCCEEEEECccHHHHHhh
Confidence 3579999999983211011 112256789999999999999999999988874
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.11 Score=54.44 Aligned_cols=118 Identities=9% Similarity=0.088 Sum_probs=88.1
Q ss_pred hHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCc
Q 045794 414 SSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAG 493 (578)
Q Consensus 414 ~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~ 493 (578)
+.++.+.+.+|++ +.+.+|+.. +|.. -+..++++.++++++.
T Consensus 181 ~~v~avR~a~g~~-~~l~vDaN~----------------------------------~~~~---~~A~~~~~~l~~~~i~ 222 (381)
T 3fcp_A 181 RHTRAIVEALGDR-ASIRVDVNQ----------------------------------AWDA---ATGAKGCRELAAMGVD 222 (381)
T ss_dssp HHHHHHHHHTCTT-CEEEEECTT----------------------------------CBCH---HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCC-CeEEEECCC----------------------------------CCCH---HHHHHHHHHHhhcCcc
Confidence 6788888999864 667788643 2322 1467889999999876
Q ss_pred EEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCC
Q 045794 494 EILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEG 573 (578)
Q Consensus 494 ~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~ 573 (578)
.| +.=..--|++.++++++.+++||.+..-+.+..|++++++...++.+.+--.-..|-....++.+.....|
T Consensus 223 ~i-------EeP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~g 295 (381)
T 3fcp_A 223 LI-------EQPVSAHDNAALVRLSQQIETAILADEAVATAYDGYQLAQQGFTGAYALKIAKAGGPNSVLALARVAQAAG 295 (381)
T ss_dssp EE-------ECCBCTTCHHHHHHHHHHSSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSTTHHHHHHHHHHHHT
T ss_pred ce-------eCCCCcccHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcC
Confidence 55 22222348999999999999999999999999999999975567776654444556666777888888888
Q ss_pred Cee
Q 045794 574 IEV 576 (578)
Q Consensus 574 i~v 576 (578)
++|
T Consensus 296 i~~ 298 (381)
T 3fcp_A 296 IGL 298 (381)
T ss_dssp CEE
T ss_pred Cce
Confidence 876
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.049 Score=57.26 Aligned_cols=141 Identities=14% Similarity=0.135 Sum_probs=97.7
Q ss_pred HHHHHHHHHcCcce--eecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEE-EeccccccCCCCccccceeeec
Q 045794 377 LEVASEYFRSGADK--ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVS-IDPRRVYITHPNDVEFKAVRVT 453 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~--vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~s-lD~~~~~~~~~~~~~~~~~~~~ 453 (578)
.+.++++++.|... +=+|.. ... ..+.++.+.+.+|++ +-+. +|+..
T Consensus 147 ~~~a~~~~~~G~~~~KiKvG~~-~~~-----------d~~~v~avR~a~g~~-~~l~~vDan~----------------- 196 (391)
T 3gd6_A 147 LDVVRQKLEQGFDVFRLYVGKN-LDA-----------DEEFLSRVKEEFGSR-VRIKSYDFSH----------------- 196 (391)
T ss_dssp HHHHHHHHHTTCCEEEEECSSC-HHH-----------HHHHHHHHHHHHGGG-CEEEEEECTT-----------------
T ss_pred HHHHHHHHHcCCCEEEEeeCCC-HHH-----------HHHHHHHHHHHcCCC-CcEEEecCCC-----------------
Confidence 45667788888664 344541 111 137788888889864 5556 88643
Q ss_pred cCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC--cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCC
Q 045794 454 DLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA--GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGA 531 (578)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~--~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi 531 (578)
+|.. -+..++++.++++|+ ..|= + -...-|++.++++++.+++|| ...+
T Consensus 197 -----------------~~~~---~~A~~~~~~l~~~~i~~~~iE------q-P~~~~d~~~~~~l~~~~~iPI--dE~~ 247 (391)
T 3gd6_A 197 -----------------LLNW---KDAHRAIKRLTKYDLGLEMIE------S-PAPRNDFDGLYQLRLKTDYPI--SEHV 247 (391)
T ss_dssp -----------------CSCH---HHHHHHHHHHTTCCSSCCEEE------C-CSCTTCHHHHHHHHHHCSSCE--EEEC
T ss_pred -----------------CcCH---HHHHHHHHHHHhcCCCcceec------C-CCChhhHHHHHHHHHHcCCCc--CCCC
Confidence 2321 135678889999887 4331 1 122238999999999999999 8889
Q ss_pred CCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 532 GAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 532 ~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.+.++++++++...++.+.+--.-..|.....++.+.+++.|++|
T Consensus 248 ~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~ 292 (391)
T 3gd6_A 248 WSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDV 292 (391)
T ss_dssp CCHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCEE
Confidence 999999999975567877765555556556777888888888876
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.086 Score=55.65 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=83.2
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +.+.+|+.. +|.. -+..++++.++++++
T Consensus 197 ~e~v~avRea~G~d-~~l~vDan~----------------------------------~~~~---~~a~~~~~~l~~~~i 238 (410)
T 2qq6_A 197 VARVAAVREAVGPE-VEVAIDMHG----------------------------------RFDI---PSSIRFARAMEPFGL 238 (410)
T ss_dssp HHHHHHHHHHHCSS-SEEEEECTT----------------------------------CCCH---HHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhcCCC-CEEEEECCC----------------------------------CCCH---HHHHHHHHHHhhcCC
Confidence 47788888889865 666788642 2221 135678888999888
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
..| -+ -....|++.++++++.+++||++.+.+.+.++++++++...++.+.+--.-..|-....++.+..++.
T Consensus 239 ~~i--Ee-----P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~ia~~A~~~ 311 (410)
T 2qq6_A 239 LWL--EE-----PTPPENLDALAEVRRSTSTPICAGENVYTRFDFRELFAKRAVDYVMPDVAKCGGLAEAKRIANLAELD 311 (410)
T ss_dssp SEE--EC-----CSCTTCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHTHHHHHHHHHHHHHTT
T ss_pred CeE--EC-----CCChhhHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 743 11 12335899999999999999999999999999999997555776654322223333355667777888
Q ss_pred CCee
Q 045794 573 GIEV 576 (578)
Q Consensus 573 ~i~v 576 (578)
|++|
T Consensus 312 g~~~ 315 (410)
T 2qq6_A 312 YIPF 315 (410)
T ss_dssp TCCB
T ss_pred CCeE
Confidence 8775
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.012 Score=55.21 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=36.0
Q ss_pred hHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhh
Q 045794 342 MLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAV 398 (578)
Q Consensus 342 ~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~ 398 (578)
..++|+++ +++|+.+||+||+.|| +++ +++||+.|+.++..+
T Consensus 140 ~p~~I~~v---~~~PiIaGGlI~t~ed-----------v~~-l~aGA~aIsTs~~~L 181 (188)
T 1vkf_A 140 APKVARKI---PGRTVIAAGLVETEEE-----------ARE-ILKHVSAISTSSRIL 181 (188)
T ss_dssp HHHHHTTS---TTSEEEEESCCCSHHH-----------HHH-HTTTSSEEEECCHHH
T ss_pred hHHHHHHh---cCCCEEEECCcCCHHH-----------HHH-HHCCCeEEEeCCHHH
Confidence 46788887 6889999999999976 999 999999999987544
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.03 Score=70.15 Aligned_cols=81 Identities=20% Similarity=0.143 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCC-CCCCCC----chhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 309 PVELARQYYKEGADEISFLNITGFR-DFPLGD----LPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~-~~~~~~----~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
..+.+..+.+.|+|-|+++...+.. +++.+. ...+.++.+|++.+++||.++|||.+-+| +..+
T Consensus 705 a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~~ipviaaGGI~~g~~-----------i~aa 773 (2060)
T 2uva_G 705 AIQQVINIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAGSGFGGSED-----------TYPY 773 (2060)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEESSCCSHHH-----------HHHH
T ss_pred HHHHHHHHHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHcCCCEEEeCCCCCHHH-----------HHHH
Confidence 3444455688999999988888754 344331 34578999999999999999999999877 9999
Q ss_pred H-----------HcCcceeecchhhhcc
Q 045794 384 F-----------RSGADKISIGSDAVYA 400 (578)
Q Consensus 384 l-----------~~Ga~~vv~gt~~~~~ 400 (578)
+ .+|||.|.+||..+--
T Consensus 774 ltg~ws~~~g~palGAdgV~~GT~f~~t 801 (2060)
T 2uva_G 774 LTGSWSTKFGYPPMPFDGCMFGSRMMTA 801 (2060)
T ss_dssp HHTCGGGTTTSCCCCCSCEEESGGGGGB
T ss_pred hcCcchhhcCCCCCCCCEEEEchhhhcC
Confidence 9 9999999999988764
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.6 Score=46.12 Aligned_cols=194 Identities=12% Similarity=0.140 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEecc------cCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNIT------GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~------~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
-..++|+.+.+.|++-+-+.-.+ +.+ + .+ ..-++.+++++++.++|+.. =+-+.++ ++
T Consensus 38 ~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~-g-~~-~egl~~l~~~~~~~Gl~~~t--e~~d~~~-----------~~ 101 (262)
T 1zco_A 38 QIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQ-G-YG-EKALRWMREAADEYGLVTVT--EVMDTRH-----------VE 101 (262)
T ss_dssp HHHHHHHHHHHTTCCEEECBSSCCCSSTTSCC-C-CT-HHHHHHHHHHHHHHTCEEEE--ECCCGGG-----------HH
T ss_pred HHHHHHHHHHHcCCCEEEEEecccCCCccccc-C-cc-HHHHHHHHHHHHHcCCcEEE--eeCCHHh-----------HH
Confidence 44567888888999865543332 111 1 11 45678889999999999854 3444433 77
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
.+.+. ++.+-||+...++ .++++++++ .|. -|++ +++
T Consensus 102 ~l~~~-vd~~kIga~~~~n------------~~ll~~~a~-~~k-PV~l----k~G------------------------ 138 (262)
T 1zco_A 102 LVAKY-SDILQIGARNSQN------------FELLKEVGK-VEN-PVLL----KRG------------------------ 138 (262)
T ss_dssp HHHHH-CSEEEECGGGTTC------------HHHHHHHTT-SSS-CEEE----ECC------------------------
T ss_pred HHHhh-CCEEEECcccccC------------HHHHHHHHh-cCC-cEEE----ecC------------------------
Confidence 77777 8999999987774 477888876 442 2333 221
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC--C-CC-CCCCCCHHHHHHHHhhCCCcEE-EecCCCCH-H
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID--C-DG-QGKGFDMDLIKLISDAVSIPVI-ASSGAGAV-E 535 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~--~-dG-~~~G~d~~li~~l~~~~~ipVI-asGGi~s~-e 535 (578)
...+--.+.+.++.+...|...+++.-+. . .+ ...-.|+..+..+++.+++||| .+.--.+. +
T Consensus 139 -----------~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~~~pVi~d~sH~~g~~~ 207 (262)
T 1zco_A 139 -----------MGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHPAGRRS 207 (262)
T ss_dssp -----------TTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECSSTTTCSGG
T ss_pred -----------CCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhhCCCEEEEcCCCCCccc
Confidence 00011124455666677787666655421 1 11 2223477888899888889984 43333232 1
Q ss_pred ---HHHHHHHhcCchHHhhhhh------h--ccCCCCHHHHHHHHHh
Q 045794 536 ---HFSDVFRKTNASAALAAGI------F--HRKEVPIQSVKEHLYK 571 (578)
Q Consensus 536 ---Di~~l~~~~G~~gv~vgsa------~--~~~~~~~~~~~~~l~~ 571 (578)
.+....-..|++|+++=+= + |...+.++++++.+++
T Consensus 208 ~v~~~~~aAva~Ga~Gl~iE~H~~~d~al~D~~~sl~p~~~~~l~~~ 254 (262)
T 1zco_A 208 LVIPLAKAAYAIGADGIMVEVHPEPEKALSDSQQQLTFDDFLQLLKE 254 (262)
T ss_dssp GHHHHHHHHHHTTCSEEEEEBCSSGGGCSSCTTTCBCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEEEecCCccccCChhhcCCCHHHHHHHHHH
Confidence 3222222479999888764 2 2234567787776653
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=94.60 E-value=0.069 Score=57.71 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCCeEEEEecc-------cCCCCCCCCchhHHHHHHHhh---hccccEEEeCCccccccCCCCccChHHHH
Q 045794 311 ELARQYYKEGADEISFLNIT-------GFRDFPLGDLPMLQVLRLTSE---NVFVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~-------~~~~~~~~~~~~~~~i~~i~~---~~~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
+.|+.+.+.|++.|.+ -.. ....+. ..+++..++++.. ..++||+++|||++.+| +
T Consensus 286 ~~a~~~~~~Gad~I~v-g~g~g~~~~tr~~~~~--~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~d-----------i 351 (491)
T 1zfj_A 286 EGARALYDAGVDVVKV-GIGPGSICTTRVVAGV--GVPQVTAIYDAAAVAREYGKTIIADGGIKYSGD-----------I 351 (491)
T ss_dssp HHHHHHHHTTCSEEEE-CSSCCTTBCHHHHTCC--CCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHH-----------H
T ss_pred HHHHHHHHcCCCEEEE-CccCCcceEEeeecCC--CCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHH-----------H
Confidence 7788888999998865 210 000111 2456777777776 46799999999999977 9
Q ss_pred HHHHHcCcceeecchhhhcc
Q 045794 381 SEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~~ 400 (578)
.+++.+||+.|++|+..+..
T Consensus 352 ~kal~~GA~~v~vG~~~~~~ 371 (491)
T 1zfj_A 352 VKALAAGGNAVMLGSMFAGT 371 (491)
T ss_dssp HHHHHTTCSEEEESTTTTTB
T ss_pred HHHHHcCCcceeeCHHhhCC
Confidence 99999999999999988763
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.052 Score=61.76 Aligned_cols=82 Identities=12% Similarity=-0.046 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecc-----cCCCC--CCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNIT-----GFRDF--PLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEV 379 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~-----~~~~~--~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~ 379 (578)
.+.+++|+.+.+ +++.+++.-.. ..... ......+.+.++++++.+++||...|||++.++
T Consensus 238 ~~~~~~~~~l~~-~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~----------- 305 (729)
T 1o94_A 238 VDGQKFVEMADS-LVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEK----------- 305 (729)
T ss_dssp THHHHHHHHHGG-GCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEECCSCCCCHHH-----------
T ss_pred HHHHHHHHHHHh-hcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHCCCEEEEeCCCCCHHH-----------
Confidence 478899998876 78877664431 10000 011233688899999999999999999999866
Q ss_pred HHHHHHcC-cceeecchhhhcc
Q 045794 380 ASEYFRSG-ADKISIGSDAVYA 400 (578)
Q Consensus 380 ~~~~l~~G-a~~vv~gt~~~~~ 400 (578)
++++++.| ||-|.+|..++.|
T Consensus 306 a~~~l~~g~aD~V~~gR~~l~~ 327 (729)
T 1o94_A 306 MIEIVTKGYADIIGCARPSIAD 327 (729)
T ss_dssp HHHHHHTTSCSBEEESHHHHHC
T ss_pred HHHHHHCCCCCEEEeCchhhcC
Confidence 99999998 9999999999985
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.11 Score=54.77 Aligned_cols=119 Identities=8% Similarity=0.062 Sum_probs=83.8
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +-+.+|+.. +|... +...++++++++++
T Consensus 200 ~e~v~avR~a~g~d-~~l~vDaN~----------------------------------~~~~~---~A~~~~~~L~~~~i 241 (410)
T 3dip_A 200 LEPFRKIRAAVGQR-IEIMCELHS----------------------------------LWGTH---AAARICNALADYGV 241 (410)
T ss_dssp HHHHHHHHHHHTTS-SEEEEECTT----------------------------------CBCHH---HHHHHHHHGGGGTC
T ss_pred HHHHHHHHHHcCCC-ceEEEECCC----------------------------------CCCHH---HHHHHHHHHHhcCC
Confidence 36788888999865 566778532 23221 35678888888887
Q ss_pred cEEEEeccCCCCC-CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 493 GEILLNCIDCDGQ-GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 493 ~~ii~tdi~~dG~-~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
..|= .- ...-|++.++++++.+++||.+.+.+.+.++++++++...++.+.+--....|-.....+.+....
T Consensus 242 ~~iE-------qP~~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~ 314 (410)
T 3dip_A 242 LWVE-------DPIAKMDNIPAVADLRRQTRAPICGGENLAGTRRFHEMLCADAIDFVMLDLTWCGGLSEGRKIAALAET 314 (410)
T ss_dssp SEEE-------CCBSCTTCHHHHHHHHHHHCCCEEECTTCCSHHHHHHHHHTTCCSEEEECTTTSSCHHHHHHHHHHHHH
T ss_pred CEEE-------CCCCCcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCeEeecccccCCHHHHHHHHHHHHH
Confidence 5442 11 223389999999999999999999999999999999744566665443333444445667778888
Q ss_pred CCCee
Q 045794 572 EGIEV 576 (578)
Q Consensus 572 ~~i~v 576 (578)
.|++|
T Consensus 315 ~gi~~ 319 (410)
T 3dip_A 315 HARPL 319 (410)
T ss_dssp TTCCE
T ss_pred cCCEE
Confidence 88876
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.072 Score=55.14 Aligned_cols=78 Identities=22% Similarity=0.218 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCC----CC-CchhHHHHHHHh---hhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFP----LG-DLPMLQVLRLTS---ENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~----~~-~~~~~~~i~~i~---~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+.|+.+.+.|+|-|.+ -..+-.-.. .+ ..+.+..+.++. +..++||...|||++-.| +.
T Consensus 172 ~e~A~~a~~aGaD~I~v-~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~d-----------i~ 239 (351)
T 2c6q_A 172 GEMVEELILSGADIIKV-GIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGD-----------VA 239 (351)
T ss_dssp HHHHHHHHHTTCSEEEE-CSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHH-----------HH
T ss_pred HHHHHHHHHhCCCEEEE-CCCCCcCcCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHH-----------HH
Confidence 36788999999997755 221100000 00 123444555554 335799999999999977 99
Q ss_pred HHHHcCcceeecchhhhc
Q 045794 382 EYFRSGADKISIGSDAVY 399 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~ 399 (578)
+++.+||+-|.+|+..+.
T Consensus 240 kAlalGA~~V~vG~~fl~ 257 (351)
T 2c6q_A 240 KAFGAGADFVMLGGMLAG 257 (351)
T ss_dssp HHHHTTCSEEEESTTTTT
T ss_pred HHHHcCCCceeccHHHhc
Confidence 999999999999998776
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.034 Score=55.08 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=54.3
Q ss_pred hhHHHHHHHhhhccccEEE--eCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccc-hh-hhh-----ccccC
Q 045794 341 PMLQVLRLTSENVFVPLTV--GGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAA-ED-YLK-----TGVKT 411 (578)
Q Consensus 341 ~~~~~i~~i~~~~~~pi~~--gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~-~~-~~~-----~~~~~ 411 (578)
.++++|+++.+...+||.+ -|||.+.+| +++++++|||-|+||+..+..+ |. ..+ -..-.
T Consensus 185 ad~elI~~Ike~~~IPVV~IAnGGI~Tped-----------A~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~~ 253 (291)
T 3o07_A 185 VPVSLLKDVLEKGKLPVVNFAAGGVATPAD-----------AALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHFD 253 (291)
T ss_dssp SCHHHHHHHHHHTSCSSCEEBCSSCCSHHH-----------HHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHccCCCEEEecCCCCCCHHH-----------HHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhcc
Confidence 3588999999988999953 699999977 9999999999999999988732 11 100 00114
Q ss_pred CchHHHHHHHhCCCCeEEEEEecc
Q 045794 412 GKSSLEQISRVYGNQAVVVSIDPR 435 (578)
Q Consensus 412 ~~~~l~~~~~~~g~~~iv~slD~~ 435 (578)
+|+.|.++++..|. -+..|++.
T Consensus 254 ~~~~~~~~s~~l~~--~m~g~~~~ 275 (291)
T 3o07_A 254 NPSKLLEVSSDLGE--LMGGVSIE 275 (291)
T ss_dssp CHHHHHHHHSSCCC--C-------
T ss_pred CHHHHHHHHhcccc--cccCcchh
Confidence 66777777766663 45555544
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.29 Score=51.21 Aligned_cols=157 Identities=10% Similarity=0.015 Sum_probs=101.3
Q ss_pred cccEEEeCCccccccCCCCccChHHHHHHHHHcCcce--eecch----hhhccchhhhhccccCCchHHHHHHHhCCCCe
Q 045794 354 FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK--ISIGS----DAVYAAEDYLKTGVKTGKSSLEQISRVYGNQA 427 (578)
Q Consensus 354 ~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~--vv~gt----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 427 (578)
.+|+....|+.+.++ -.+.++++.+.|... +=+|. ..... ..+.++.+.+.+|++
T Consensus 134 ~v~~y~s~~~~~~e~-------~~~~a~~~~~~G~~~~K~Kvg~~~~~~~~~~-----------d~~~v~avR~a~G~~- 194 (386)
T 3fv9_G 134 PVPVISSIGGDTPEA-------MRAKVARHRAQGFKGHSIKIGASEAEGGPAL-----------DAERITACLADRQPG- 194 (386)
T ss_dssp CBCEEEEECSCCHHH-------HHHHHHHHHHTTCCEEEEECCCCTTTTHHHH-----------HHHHHHHHTTTCCTT-
T ss_pred ceeeeEecCCCCHHH-------HHHHHHHHHHCCCCEEEEeccCCCCCCCHHH-----------HHHHHHHHHHHcCCC-
Confidence 466665556666554 245677788888664 44452 11111 136788888889865
Q ss_pred EEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHH-HHcCCcEEEEeccCCCCCC
Q 045794 428 VVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAV-EDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 428 iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~-~~~G~~~ii~tdi~~dG~~ 506 (578)
+-+.+|+.. +|.. -+..++++.+ +++++ .| +.=.
T Consensus 195 ~~L~vDaN~----------------------------------~~~~---~~A~~~~~~l~~~~~i-~i-------EeP~ 229 (386)
T 3fv9_G 195 EWYLADANN----------------------------------GLTV---EHALRMLSLLPPGLDI-VL-------EAPC 229 (386)
T ss_dssp CEEEEECTT----------------------------------CCCH---HHHHHHHHHSCSSCCC-EE-------ECCC
T ss_pred CeEEEECCC----------------------------------CCCH---HHHHHHHHHhhccCCc-EE-------ecCC
Confidence 677788543 1221 1234555555 44443 21 1111
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
. |++.++++++.+++||.+..-+.+..|++++++...++.+.+--....|-....++.+.....|+++
T Consensus 230 ~--~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~ 297 (386)
T 3fv9_G 230 A--SWAETKSLRARCALPLLLDELIQTETDLIAAIRDDLCDGVGLKVSKQGGITPMLRQRAIAAAAGMVM 297 (386)
T ss_dssp S--SHHHHHHHHTTCCSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCEE
T ss_pred C--CHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEECccccCCHHHHHHHHHHHHHcCCEE
Confidence 1 8999999999999999999999999999999974457766654444455555667778888888876
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=94.24 E-value=0.096 Score=54.80 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=97.0
Q ss_pred HHHHHHHHH-cCcc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeec
Q 045794 377 LEVASEYFR-SGAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVT 453 (578)
Q Consensus 377 ~~~~~~~l~-~Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~ 453 (578)
++.++++++ .|.. |+=+|...+.++ .+.++.+.+.+|++ +.+.+|+..
T Consensus 153 ~~~~~~~~~~~G~~~~KiKvg~~~~~~d-----------~~~v~avR~a~g~~-~~l~vDaN~----------------- 203 (382)
T 3dgb_A 153 IAEAQKMLDLRRHRIFKLKIGAGEVDRD-----------LAHVIAIKKALGDS-ASVRVDVNQ----------------- 203 (382)
T ss_dssp HHHHHHHHHTTSCSEEEEECCSSCHHHH-----------HHHHHHHHHHHGGG-SEEEEECTT-----------------
T ss_pred HHHHHHHHHhCCCCEEEEeeCCCCHHHH-----------HHHHHHHHHHcCCC-CeEEEeCCC-----------------
Confidence 345666666 4654 444565333221 36788888889854 667788543
Q ss_pred cCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCC
Q 045794 454 DLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533 (578)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s 533 (578)
+|.. -+..+++++++++++..| +.=..--|++.++++++.+++||.+..-+.+
T Consensus 204 -----------------~~~~---~~A~~~~~~l~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~ipIa~dE~~~~ 256 (382)
T 3dgb_A 204 -----------------AWDE---AVALRACRILGGNGIDLI-------EQPISRNNRAGMVRLNASSPAPIMADESIEC 256 (382)
T ss_dssp -----------------CBCH---HHHHHHHHHHHTTTCCCE-------ECCBCTTCHHHHHHHHHHCSSCEEESTTCSS
T ss_pred -----------------CCCH---HHHHHHHHHHhhcCcCee-------eCCCCccCHHHHHHHHHhCCCCEEeCCCcCC
Confidence 2322 145778999999887544 1112223899999999999999999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
..|++++++...++.+.+--.-..|-.....+.+.....|++|
T Consensus 257 ~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~ 299 (382)
T 3dgb_A 257 VEDAFNLAREGAASVFALKIAKNGGPRATLRTAAIAEAAGIGL 299 (382)
T ss_dssp HHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeE
Confidence 9999999975567776644444445444566667777778775
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.49 Score=47.13 Aligned_cols=188 Identities=15% Similarity=0.140 Sum_probs=111.3
Q ss_pred HHHHHHHHcCCCeEEEEec--c---cCCCC-CCCCchhHHHHHHHhhhccccEEEeCCcc---ccccCCCCccChHHHHH
Q 045794 311 ELARQYYKEGADEISFLNI--T---GFRDF-PLGDLPMLQVLRLTSENVFVPLTVGGGIR---DFTDANGRHYSSLEVAS 381 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl--~---~~~~~-~~~~~~~~~~i~~i~~~~~~pi~~gGGir---~~~d~~~~~~~~~~~~~ 381 (578)
-.|+...+.|++-|++-+. . +..|. .......+..+++|++.+.+||.++.--. +.++ -.+.++
T Consensus 27 ~sA~~~~~aG~~ai~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~~~~~-------~~~~v~ 99 (275)
T 2ze3_A 27 ASARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYGHAPED-------VRRTVE 99 (275)
T ss_dssp HHHHHHHHHTCSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHHHHCSSCEEEECTTCSSSSHHH-------HHHHHH
T ss_pred HHHHHHHHcCCCEEEECcHHHHHhCCCCCCCCCCHHHHHHHHHHHHhhcCCCEEeecCCCCCCCHHH-------HHHHHH
Confidence 3577777889999998852 2 21121 12234567778889988899998863221 1111 257789
Q ss_pred HHHHcCcceeec-chhh-----hccchhhhhccccCCchHHHHHHHh---CCCC-eEEEEEeccccccCCCCccccceee
Q 045794 382 EYFRSGADKISI-GSDA-----VYAAEDYLKTGVKTGKSSLEQISRV---YGNQ-AVVVSIDPRRVYITHPNDVEFKAVR 451 (578)
Q Consensus 382 ~~l~~Ga~~vv~-gt~~-----~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~-~iv~slD~~~~~~~~~~~~~~~~~~ 451 (578)
++.++||.-|-| +... +....+++ +.|+.+.+. -|.. .|+.=-|...
T Consensus 100 ~l~~aGaagv~iED~~~~~~k~l~~~~e~~--------~~I~aa~~a~~~~g~~~~i~aRtda~~--------------- 156 (275)
T 2ze3_A 100 HFAALGVAGVNLEDATGLTPTELYDLDSQL--------RRIEAARAAIDASGVPVFLNARTDTFL--------------- 156 (275)
T ss_dssp HHHHTTCSEEEEECBCSSSSSCBCCHHHHH--------HHHHHHHHHHHHHTSCCEEEEECCTTT---------------
T ss_pred HHHHcCCcEEEECCCcCCCCCccCCHHHHH--------HHHHHHHHhHhhcCCCeEEEEechhhh---------------
Confidence 999999998887 4321 11111222 334444332 1322 2222111110
Q ss_pred eccCCCCCCCcceEEEEEccccc---CCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEe
Q 045794 452 VTDLGPNGEEYAWYQCTVNGGRE---GRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIAS 528 (578)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIas 528 (578)
.|+.+ ..--..++-++.+++.|++.|.+..+ ++.+.++++.+.+++|+-+.
T Consensus 157 ------------------~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~--------~~~~~~~~i~~~~~~P~n~~ 210 (275)
T 2ze3_A 157 ------------------KGHGATDEERLAETVRRGQAYADAGADGIFVPLA--------LQSQDIRALADALRVPLNVM 210 (275)
T ss_dssp ------------------TTCSSSHHHHHHHHHHHHHHHHHTTCSEEECTTC--------CCHHHHHHHHHHCSSCEEEE
T ss_pred ------------------ccccccchhhHHHHHHHHHHHHHCCCCEEEECCC--------CCHHHHHHHHHhcCCCEEEe
Confidence 00000 00014678889999999999887654 56789999999999999666
Q ss_pred cCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 529 SGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 529 GGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
.+ ...-...+|.+ .|+.-|+.+...+
T Consensus 211 ~~-~~~~~~~eL~~-lGv~~v~~~~~~~ 236 (275)
T 2ze3_A 211 AF-PGSPVPRALLD-AGAARVSFGQSLM 236 (275)
T ss_dssp CC-TTSCCHHHHHH-TTCSEEECTTHHH
T ss_pred cC-CCCCCHHHHHH-cCCcEEEEChHHH
Confidence 43 12233566654 8988888777654
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=94.20 E-value=0.078 Score=56.57 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|.+.+=| |.. .. + ..+.++.+.+.+|++ +.+.+|+..
T Consensus 203 ~~~a~~~~~~Gf~~vKik~g~~-~~----~-------d~e~v~avR~a~G~d-~~l~vDan~------------------ 251 (441)
T 2hxt_A 203 VRLAKEAVADGFRTIKLKVGAN-VQ----D-------DIRRCRLARAAIGPD-IAMAVDANQ------------------ 251 (441)
T ss_dssp HHHHHHHHHTTCSEEEEECCSC-HH----H-------HHHHHHHHHHHHCSS-SEEEEECTT------------------
T ss_pred HHHHHHHHHcCCCEEEEccCCC-HH----H-------HHHHHHHHHHhcCCC-CeEEEECCC------------------
Confidence 45678888889876544 421 11 1 136788888889865 566788632
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCC
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGA 533 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s 533 (578)
+|.. -+..++++.++++|+..| +.-....|++.++++++.+ ++||++.+.+.+
T Consensus 252 ----------------~~~~---~~a~~~~~~l~~~~i~~i-------EqP~~~~d~~~~~~l~~~~~~iPIa~dE~~~~ 305 (441)
T 2hxt_A 252 ----------------RWDV---GPAIDWMRQLAEFDIAWI-------EEPTSPDDVLGHAAIRQGITPVPVSTGEHTQN 305 (441)
T ss_dssp ----------------CCCH---HHHHHHHHTTGGGCCSCE-------ECCSCTTCHHHHHHHHHHHTTSCEEECTTCCS
T ss_pred ----------------CCCH---HHHHHHHHHHHhcCCCee-------eCCCCHHHHHHHHHHHhhCCCCCEEEeCCcCC
Confidence 2221 135678888888887643 1223334899999999887 699999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+++++++++...++.+.+--.-..|-.....+....++.|++|
T Consensus 306 ~~~~~~~i~~~~~d~v~ik~~~~GGite~~~ia~~A~~~g~~~ 348 (441)
T 2hxt_A 306 RVVFKQLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRV 348 (441)
T ss_dssp HHHHHHHHHHTCCSEECCCTTTSSHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCCEEEeCcceeCCHHHHHHHHHHHHHcCCeE
Confidence 9999999975557776644333333333556667778888876
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=94.14 E-value=0.19 Score=51.53 Aligned_cols=141 Identities=18% Similarity=0.205 Sum_probs=94.9
Q ss_pred HHHHHHHHHcCcceeec--chhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKISI--GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~--gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|.+.+=+ |.. .+ . ..+.++.+.+. |++ +.+.+|+..
T Consensus 144 ~~~a~~~~~~Gf~~iKik~g~~-~~----~-------d~~~v~avr~~-g~~-~~l~vDan~------------------ 191 (345)
T 2zad_A 144 VKEAKKIFEEGFRVIKIKVGEN-LK----E-------DIEAVEEIAKV-TRG-AKYIVDANM------------------ 191 (345)
T ss_dssp HHHHHHHHHTTCSEEEEECCSC-HH----H-------HHHHHHHHHHH-STT-CEEEEECTT------------------
T ss_pred HHHHHHHHHcCcCEEEEeecCC-HH----H-------HHHHHHHHHhh-CCC-CeEEEECCC------------------
Confidence 35577788888775544 421 11 1 13678888888 754 556788632
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCc--EEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCC
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAG--EILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAG 532 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~--~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~ 532 (578)
+|.. -+..++++.++++++. .|= + -....|++.++++++.+++||.+.+.+.
T Consensus 192 ----------------~~~~---~~a~~~~~~l~~~~i~~~~iE------~-P~~~~~~~~~~~l~~~~~ipia~dE~~~ 245 (345)
T 2zad_A 192 ----------------GYTQ---KEAVEFARAVYQKGIDIAVYE------Q-PVRREDIEGLKFVRFHSPFPVAADESAR 245 (345)
T ss_dssp ----------------CSCH---HHHHHHHHHHHHTTCCCSEEE------C-CSCTTCHHHHHHHHHHSSSCEEESTTCC
T ss_pred ----------------CCCH---HHHHHHHHHHHhcCCCeeeee------C-CCCcccHHHHHHHHHhCCCCEEEeCCcC
Confidence 2321 1357889999999887 431 1 1233589999999999999999999999
Q ss_pred CHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 533 AVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 533 s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+.++++++++...++.+.+ +.-..|-....++.+..++.|+++
T Consensus 246 ~~~~~~~~i~~~~~d~v~i-k~~~GGit~~~~i~~~A~~~g~~~ 288 (345)
T 2zad_A 246 TKFDVMRLVKEEAVDYVNI-KLMKSGISDALAIVEIAESSGLKL 288 (345)
T ss_dssp SHHHHHHHHHHTCCSEEEE-CHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred CHHHHHHHHHhCCCCEEEE-ecccccHHHHHHHHHHHHHcCCeE
Confidence 9999999997555777664 222233333556777778888875
|
| >3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.021 Score=55.76 Aligned_cols=83 Identities=13% Similarity=0.219 Sum_probs=49.5
Q ss_pred cEEEEEECCCCC---HHHHHHHHHHCC--CeEEEeCC-----------------ccCCCCCCEEEECCC-CCchHHHHHH
Q 045794 48 SVVTLLDYGAGN---VRSVRNAIRHLG--FGIKDVQT-----------------PEDILNANRLIFPGV-GAFAAAMDVL 104 (578)
Q Consensus 48 ~~I~vld~~~g~---~~~i~~~L~~~G--v~v~~v~~-----------------~~dl~~~DGlILpGG-g~~~~~~~~l 104 (578)
++|+|+=++--. +....+.|+..+ +++.++.. .++..++|.||+||| ... ... .
T Consensus 21 ~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs~~~~V~ss~G~~v~~d~~l~~~~~~D~liVPGG~~g~-~~l--~ 97 (236)
T 3bhn_A 21 YKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILGTKPEHHSQLGMTVKTDGHVSEVKEQDVVLITSGYRGI-PAA--L 97 (236)
T ss_dssp EEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEESSSEEEBTTCCEEECSEEGGGGGGCSEEEECCCTTHH-HHH--H
T ss_pred CEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEECCCcEEecCCcEEecCcccccccCCCEEEEcCCccCH-hhh--c
Confidence 457777554111 223455666654 56665531 012457999999998 321 111 1
Q ss_pred HhhcHHHHHHHHHhCCC-CEEEEechHHHHhh
Q 045794 105 NKTGMAEALCAYIEKDR-PFLGICLGLQLLFQ 135 (578)
Q Consensus 105 ~~~~l~~~i~~~~~~g~-PIlGIClG~QlLa~ 135 (578)
....+.+++ ..+.++ +|.+||-|-.+|+.
T Consensus 98 ~~~~l~~~L--~~~~~~~~IaaIC~G~~lLa~ 127 (236)
T 3bhn_A 98 QDENFMSAL--KLDPSRQLIGSICAGSFVLHE 127 (236)
T ss_dssp TCHHHHHHC--CCCTTTCEEEEETTHHHHHHH
T ss_pred cCHHHHHHH--HhCCCCCEEEEEcHHHHHHHH
Confidence 122456667 344556 99999999999998
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=94.03 E-value=0.13 Score=50.86 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccc--cccCCCCccChHHHHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRD--FTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~--~~d~~~~~~~~~~~~~~~l~ 385 (578)
++.++++...+.|++.|-+ .- ..+++.++++.+.+.+|+.+-|||+. .+|+ ++.++++++
T Consensus 167 ~~~~~a~~a~~~Gad~i~~-~~----------~~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~-------~~~~~~~~~ 228 (273)
T 2qjg_A 167 LVAHAARLGAELGADIVKT-SY----------TGDIDSFRDVVKGCPAPVVVAGGPKTNTDEEF-------LQMIKDAME 228 (273)
T ss_dssp HHHHHHHHHHHTTCSEEEE-CC----------CSSHHHHHHHHHHCSSCEEEECCSCCSSHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEE-CC----------CCCHHHHHHHHHhCCCCEEEEeCCCCCCHHHH-------HHHHHHHHH
Confidence 4556678888999995554 21 12478899999888999999999996 3320 122677778
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
+||+.|++|+..+..
T Consensus 229 ~Ga~gv~vg~~i~~~ 243 (273)
T 2qjg_A 229 AGAAGVAVGRNIFQH 243 (273)
T ss_dssp HTCSEEECCHHHHTS
T ss_pred cCCcEEEeeHHhhCC
Confidence 999999999998874
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.1 Score=54.25 Aligned_cols=80 Identities=19% Similarity=0.146 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCCeEEEEecccC--------CCC-----CCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCcc
Q 045794 309 PVELARQYYKEGADEISFLNITGF--------RDF-----PLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHY 374 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~--------~~~-----~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~ 374 (578)
..+.|+.+.+.|+|.|.+-.-.+. +.. .....+....+.++.... .+||.+.||||+-.|
T Consensus 219 s~e~A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvia~GGI~~g~D------ 292 (365)
T 3sr7_A 219 DVKTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILASGGIRHPLD------ 292 (365)
T ss_dssp CHHHHHHHHHHTCCEEECCCBC--------------CGGGTTCSCBHHHHHHHHGGGTTTSEEEECSSCCSHHH------
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHHHHHhcCCCeEEEeCCCCCHHH------
Confidence 347899999999997764322111 000 000123445666554322 689999999999977
Q ss_pred ChHHHHHHHHHcCcceeecchhhhc
Q 045794 375 SSLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 375 ~~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
+.+.+.+||+-|.+|+..+.
T Consensus 293 -----v~KaLalGAdaV~ig~~~l~ 312 (365)
T 3sr7_A 293 -----IIKALVLGAKAVGLSRTMLE 312 (365)
T ss_dssp -----HHHHHHHTCSEEEESHHHHH
T ss_pred -----HHHHHHcCCCEEEECHHHHH
Confidence 88888999999999998774
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.59 Score=44.94 Aligned_cols=182 Identities=18% Similarity=0.169 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccCh--HHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSS--LEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~--~~~~~~~l 384 (578)
.++.++.+...+.|++.+.+ .- ...+..++..+..++++ ...+ .+. .|..++. ...+++.+
T Consensus 19 ~~i~~l~~~a~~~~~~aVcv-~p-----------~~v~~~~~~l~~~~v~v--~~vi-gFP--~G~~~~~~k~~e~~~Ai 81 (220)
T 1ub3_A 19 EEVAKAAEEALEYGFYGLCI-PP-----------SYVAWVRARYPHAPFRL--VTVV-GFP--LGYQEKEVKALEAALAC 81 (220)
T ss_dssp HHHHHHHHHHHHHTCSEEEC-CG-----------GGHHHHHHHCTTCSSEE--EEEE-STT--TCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEE-CH-----------HHHHHHHHHhCCCCceE--EEEe-cCC--CCCCchHHHHHHHHHHH
Confidence 46677777777788886662 11 12444444433334444 3333 221 1322222 25688899
Q ss_pred HcCcceeec--chhhhcc-chhhhhccccCCchHHHHHHHhCCCCeEEEE-EeccccccCCCCccccceeeeccCCCCCC
Q 045794 385 RSGADKISI--GSDAVYA-AEDYLKTGVKTGKSSLEQISRVYGNQAVVVS-IDPRRVYITHPNDVEFKAVRVTDLGPNGE 460 (578)
Q Consensus 385 ~~Ga~~vv~--gt~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~s-lD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (578)
+.|||-|-+ +--++.+ +.+.+ .+.+.++.+..+. .++-. +. .
T Consensus 82 ~~GAdevd~vinig~~~~g~~~~v-------~~ei~~v~~a~~~-~~lkvIle--t------------------------ 127 (220)
T 1ub3_A 82 ARGADEVDMVLHLGRAKAGDLDYL-------EAEVRAVREAVPQ-AVLKVILE--T------------------------ 127 (220)
T ss_dssp HTTCSEEEEECCHHHHHTTCHHHH-------HHHHHHHHHHSTT-SEEEEECC--G------------------------
T ss_pred HcCCCEEEecccchhhhCCCHHHH-------HHHHHHHHHHHcC-CCceEEEe--c------------------------
Confidence 999997643 3333321 22222 2456666666543 22221 11 0
Q ss_pred CcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC-CCCCHHHHHHHHh--hCCCcEEEecCCCCHHHH
Q 045794 461 EYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG-KGFDMDLIKLISD--AVSIPVIASSGAGAVEHF 537 (578)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~-~G~d~~li~~l~~--~~~ipVIasGGi~s~eDi 537 (578)
+.. ++-.....++...+.|++.|= |+. |.. .|...+-++.+++ ...+||-++|||++.+|+
T Consensus 128 ----------~~l--~~e~i~~a~~ia~eaGADfVK-TsT---Gf~~~gat~~dv~~m~~~vg~~v~VkaaGGirt~~~a 191 (220)
T 1ub3_A 128 ----------GYF--SPEEIARLAEAAIRGGADFLK-TST---GFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETA 191 (220)
T ss_dssp ----------GGS--CHHHHHHHHHHHHHHTCSEEE-CCC---SSSSCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHH
T ss_pred ----------CCC--CHHHHHHHHHHHHHhCCCEEE-eCC---CCCCCCCCHHHHHHHHHhhCCCCeEEEECCCCCHHHH
Confidence 001 111255678888899998654 432 222 2444444444444 447999999999999999
Q ss_pred HHHHHhcCch--HHhhhhhhc
Q 045794 538 SDVFRKTNAS--AALAAGIFH 556 (578)
Q Consensus 538 ~~l~~~~G~~--gv~vgsa~~ 556 (578)
.++.+ .|++ |+..|..+.
T Consensus 192 l~~i~-aGa~RiG~S~g~~I~ 211 (220)
T 1ub3_A 192 LRMLK-AGASRLGTSSGVALV 211 (220)
T ss_dssp HHHHH-TTCSEEEETTHHHHH
T ss_pred HHHHH-CCCcccchhHHHHHH
Confidence 99996 9999 777666554
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.13 Score=51.74 Aligned_cols=68 Identities=15% Similarity=0.079 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
++-++++.+.|++.|.+=+ ++.+.+++..+.. .+.+.+|||| +++.+.++.+ +|+|.+.+|+..|+-
T Consensus 217 l~e~~eAl~aGaDiImLDn---------~s~~~l~~av~~~~~~v~leaSGGI-t~~~i~~~A~-tGVD~IsvGalthsa 285 (300)
T 3l0g_A 217 ISQVEESLSNNVDMILLDN---------MSISEIKKAVDIVNGKSVLEVSGCV-NIRNVRNIAL-TGVDYISIGCITNSF 285 (300)
T ss_dssp HHHHHHHHHTTCSEEEEES---------CCHHHHHHHHHHHTTSSEEEEESSC-CTTTHHHHHT-TTCSEEECGGGTSSC
T ss_pred HHHHHHHHHcCCCEEEECC---------CCHHHHHHHHHhhcCceEEEEECCC-CHHHHHHHHH-cCCCEEEeCccccCC
Confidence 4677778889999777643 3445666655433 6789999999 7899999985 999999999988865
Q ss_pred C
Q 045794 559 E 559 (578)
Q Consensus 559 ~ 559 (578)
+
T Consensus 286 ~ 286 (300)
T 3l0g_A 286 Q 286 (300)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.14 Score=55.61 Aligned_cols=77 Identities=23% Similarity=0.162 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCC----C-CchhHHHHHHHhhhc---------cccEEEeCCccccccCCCCccCh
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPL----G-DLPMLQVLRLTSENV---------FVPLTVGGGIRDFTDANGRHYSS 376 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~----~-~~~~~~~i~~i~~~~---------~~pi~~gGGir~~~d~~~~~~~~ 376 (578)
+.|+.+.+.|++.+.+ -..+-.-+.. + ..+.+..+.++.+.+ ++||+..|||++..|
T Consensus 296 ~~a~~l~~aGad~I~V-g~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~d-------- 366 (503)
T 1me8_A 296 EGFRYLADAGADFIKI-GIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYH-------- 366 (503)
T ss_dssp HHHHHHHHHTCSEEEE-CSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHH--------
T ss_pred HHHHHHHHhCCCeEEe-cccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHH--------
Confidence 6778888999997765 5533100000 0 124566666665443 699999999999977
Q ss_pred HHHHHHHHHcCcceeecchhhhc
Q 045794 377 LEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
+.+.+.+||+.|.+|+....
T Consensus 367 ---i~kAlalGA~~V~iG~~~~~ 386 (503)
T 1me8_A 367 ---MTLALAMGADFIMLGRYFAR 386 (503)
T ss_dssp ---HHHHHHTTCSEEEESHHHHT
T ss_pred ---HHHHHHcCCCEEEECchhhc
Confidence 99999999999999997765
|
| >2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.042 Score=61.39 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=61.1
Q ss_pred CcEEEEEEC--C-C--CCHHHHHHHHHHCCCeEEEeCCcc-----------CCCCCCEEEECCCCCc--h----------
Q 045794 47 DSVVTLLDY--G-A--GNVRSVRNAIRHLGFGIKDVQTPE-----------DILNANRLIFPGVGAF--A---------- 98 (578)
Q Consensus 47 ~~~I~vld~--~-~--g~~~~i~~~L~~~Gv~v~~v~~~~-----------dl~~~DGlILpGGg~~--~---------- 98 (578)
..+|+|+-- + . .-...+.+.|++.|+++.++.... +...||+||||||... .
T Consensus 529 g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~ 608 (688)
T 2iuf_A 529 GLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSA 608 (688)
T ss_dssp TCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCT
T ss_pred CCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccccccccccc
Confidence 356888754 1 1 133457789999999999885321 1346999999998421 0
Q ss_pred HH-HHHHH-hhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 99 AA-MDVLN-KTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 99 ~~-~~~l~-~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.+ ...+. .....+.++++.+.+|||-+||-|-++|..+
T Consensus 609 ~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 609 GSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp TSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred ccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 00 01121 2246788999999999999999999999874
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=93.55 E-value=0.18 Score=52.93 Aligned_cols=118 Identities=15% Similarity=0.175 Sum_probs=85.6
Q ss_pred hHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCc
Q 045794 414 SSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAG 493 (578)
Q Consensus 414 ~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~ 493 (578)
+.++.+.+.+|++ +-+.+|+.. +|.. -+..+++++++++++.
T Consensus 187 ~~v~avReavG~d-~~l~vDaN~----------------------------------~~~~---~~A~~~~~~l~~~~i~ 228 (388)
T 3tcs_A 187 EIIPTMRRELGDD-VDLLIDANS----------------------------------CYTP---DRAIEVGHMLQDHGFC 228 (388)
T ss_dssp HHHHHHHHHHCSS-SEEEEECTT----------------------------------CCCH---HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCC-CeEEEeCCC----------------------------------CcCH---HHHHHHHHHHhhcCCe
Confidence 5678888889865 677788543 2322 1357889999999886
Q ss_pred EEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCC
Q 045794 494 EILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEG 573 (578)
Q Consensus 494 ~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~ 573 (578)
.+ +.=..--|++.++++++.+++||.+..-+.+..+++++++...++.+.+--.-..|-.....+...+...|
T Consensus 229 ~i-------EeP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~a~kia~~A~~~g 301 (388)
T 3tcs_A 229 HF-------EEPCPYWELAQTKQVTDALDIDVTGGEQDCDLPTWQRMIDMRAVDIVQPDILYLGGICRTLRVVEMARAAG 301 (388)
T ss_dssp EE-------ECCSCTTCHHHHHHHHHHCSSCEEECTTCCCHHHHHHHHHHTCCSEECCCHHHHTSHHHHHHHHHHHHHTT
T ss_pred EE-------ECCCCccCHHHHHHHHHhcCCCEEcCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcC
Confidence 54 11122238999999999999999999999999999999975557766644444455555667788888888
Q ss_pred Cee
Q 045794 574 IEV 576 (578)
Q Consensus 574 i~v 576 (578)
++|
T Consensus 302 v~~ 304 (388)
T 3tcs_A 302 LPV 304 (388)
T ss_dssp CCB
T ss_pred CEE
Confidence 876
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=93.51 E-value=1.1 Score=45.93 Aligned_cols=204 Identities=17% Similarity=0.147 Sum_probs=123.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCC-----CCCCCchhHHHHHHHhhhc-cccEEEeC--CccccccCCCCccChHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRD-----FPLGDLPMLQVLRLTSENV-FVPLTVGG--GIRDFTDANGRHYSSLE 378 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~-----~~~~~~~~~~~i~~i~~~~-~~pi~~gG--Gir~~~d~~~~~~~~~~ 378 (578)
.+-+++++.+.+.|++.|=+--.++.-. +. ......+.++++++.. ++|+++=+ |.... +
T Consensus 30 e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~-~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~-----------~ 97 (345)
T 1nvm_A 30 DDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGF-GRHTDLEYIEAVAGEISHAQIATLLLPGIGSV-----------H 97 (345)
T ss_dssp HHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBC-CSSCHHHHHHHHHTTCSSSEEEEEECBTTBCH-----------H
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccC-CCCCHHHHHHHHHhhCCCCEEEEEecCCcccH-----------H
Confidence 4667899999999999776621111100 11 1234678888887753 56765432 22223 4
Q ss_pred HHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEE-eccccccCCCCccccceeeeccCCC
Q 045794 379 VASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSI-DPRRVYITHPNDVEFKAVRVTDLGP 457 (578)
Q Consensus 379 ~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~sl-D~~~~~~~~~~~~~~~~~~~~~~~~ 457 (578)
.+++..++|++.+.|-... .+.+.. .+.++ .++++|- .+.+++ |.-.
T Consensus 98 ~i~~a~~aGvd~v~I~~~~-s~~~~~--------~~~i~-~ak~~G~-~v~~~~~~a~~--------------------- 145 (345)
T 1nvm_A 98 DLKNAYQAGARVVRVATHC-TEADVS--------KQHIE-YARNLGM-DTVGFLMMSHM--------------------- 145 (345)
T ss_dssp HHHHHHHHTCCEEEEEEET-TCGGGG--------HHHHH-HHHHHTC-EEEEEEESTTS---------------------
T ss_pred HHHHHHhCCcCEEEEEEec-cHHHHH--------HHHHH-HHHHCCC-EEEEEEEeCCC---------------------
Confidence 5999999999998885322 111111 13343 3455664 355544 2110
Q ss_pred CCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCC-HHHHHHHHhhC--CCcEEEec----C
Q 045794 458 NGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFD-MDLIKLISDAV--SIPVIASS----G 530 (578)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d-~~li~~l~~~~--~ipVIasG----G 530 (578)
...-.+.++++.+.+.|++.|-+.|.. |.+...+ .++++.+++.+ ++||-+-+ |
T Consensus 146 -----------------~~~e~~~~ia~~~~~~Ga~~i~l~DT~--G~~~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G 206 (345)
T 1nvm_A 146 -----------------IPAEKLAEQGKLMESYGATCIYMADSG--GAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLS 206 (345)
T ss_dssp -----------------SCHHHHHHHHHHHHHHTCSEEEEECTT--CCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTS
T ss_pred -----------------CCHHHHHHHHHHHHHCCCCEEEECCCc--CccCHHHHHHHHHHHHHhcCCCceEEEEECCCcc
Confidence 001136789999999999998888874 5554333 36888898888 78887733 5
Q ss_pred CCCHHHHHHHHHhcCch---HHhhhhhhccCCCCHHHHHHHHHhCCCe
Q 045794 531 AGAVEHFSDVFRKTNAS---AALAAGIFHRKEVPIQSVKEHLYKEGIE 575 (578)
Q Consensus 531 i~s~eDi~~l~~~~G~~---gv~vgsa~~~~~~~~~~~~~~l~~~~i~ 575 (578)
.+-..-+..+ + .||+ +.+.|-.=-.|..+++++...|.+.|+.
T Consensus 207 ~avAn~laA~-~-aGa~~vd~tv~GlG~~aGN~~le~lv~~L~~~g~~ 252 (345)
T 1nvm_A 207 LGVANSIVAV-E-EGCDRVDASLAGMGAGAGNAPLEVFIAVAERLGWN 252 (345)
T ss_dssp CHHHHHHHHH-H-TTCCEEEEBGGGCSSTTCBCBHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHH-H-cCCCEEEecchhccCCccCcCHHHHHHHHHhcCCC
Confidence 5544545444 3 6754 4444433334667888898888877765
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.093 Score=59.21 Aligned_cols=82 Identities=10% Similarity=-0.029 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecc----cCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNIT----GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~----~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
.+.+++|+.+.+ ++|.+++.-.. .........+.+.+.++++.+.+++||..-|||++.++ +++
T Consensus 244 ~~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~-----------a~~ 311 (690)
T 3k30_A 244 EDIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLTTKPVVGVGRFTSPDA-----------MVR 311 (690)
T ss_dssp HHHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGCSSCEEECSCCCCHHH-----------HHH
T ss_pred HHHHHHHHHHHh-hcCEEEEecccccccCCCCccCCccccHHHHHHHHHHcCCeEEEeCCCCCHHH-----------HHH
Confidence 467889999877 78877654211 00000112244578889999989999999999999866 999
Q ss_pred HHHcC-cceeecchhhhcc
Q 045794 383 YFRSG-ADKISIGSDAVYA 400 (578)
Q Consensus 383 ~l~~G-a~~vv~gt~~~~~ 400 (578)
+++.| ||-|.+|..++.|
T Consensus 312 ~l~~g~~d~v~~gR~~~~~ 330 (690)
T 3k30_A 312 QIKAGILDLIGAARPSIAD 330 (690)
T ss_dssp HHHTTSCSEEEESHHHHHC
T ss_pred HHHCCCcceEEEcHHhHhC
Confidence 99998 9999999999985
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=93.38 E-value=0.18 Score=52.40 Aligned_cols=140 Identities=6% Similarity=-0.005 Sum_probs=94.4
Q ss_pred HHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCC
Q 045794 377 LEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLG 456 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~ 456 (578)
.+.++++.+.|.+.+=+-.. .+. ..+.++.+.+.+ + .+-+.+|+..
T Consensus 153 ~~~a~~~~~~G~~~iKik~~-~~~-----------d~~~v~avr~a~-~-~~~l~vDan~-------------------- 198 (375)
T 1r0m_A 153 VDLVRRHVEQGYRRIKLKIK-PGW-----------DVQPVRATREAF-P-DIRLTVDANS-------------------- 198 (375)
T ss_dssp HHHHHHHHHTTCSCEEEECB-TTB-----------SHHHHHHHHHHC-T-TSCEEEECTT--------------------
T ss_pred HHHHHHHHHhcccEEEEecC-hHH-----------HHHHHHHHHHHc-C-CCeEEEeCCC--------------------
Confidence 35677788888765433210 111 236788888888 4 3667888532
Q ss_pred CCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHH
Q 045794 457 PNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEH 536 (578)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eD 536 (578)
+|.. -+ .+++++++++++..|= +. ....|++.++++++.+++||.+.+.+.+.++
T Consensus 199 --------------~~~~---~~-~~~~~~l~~~~i~~iE------qP-~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~ 253 (375)
T 1r0m_A 199 --------------AYTL---AD-AGRLRQLDEYDLTYIE------QP-LAWDDLVDHAELARRIRTPLCLDESVASASD 253 (375)
T ss_dssp --------------CCCG---GG-HHHHHTTGGGCCSCEE------CC-SCTTCSHHHHHHHHHCSSCEEESTTCCSHHH
T ss_pred --------------CCCH---HH-HHHHHHHHhCCCcEEE------CC-CCcccHHHHHHHHHhCCCCEEecCccCCHHH
Confidence 2322 14 7888888888876551 22 2335889999999999999999999999999
Q ss_pred HHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCe
Q 045794 537 FSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIE 575 (578)
Q Consensus 537 i~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~ 575 (578)
++++++...++.+.+--.-..|-....++.+..++.|++
T Consensus 254 ~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~ 292 (375)
T 1r0m_A 254 ARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAP 292 (375)
T ss_dssp HHHHHHHTSCSEEEECTTTTTSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCEEEECcchhcCHHHHHHHHHHHHHcCCc
Confidence 999997555777764333333433356777788888887
|
| >4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.14 Score=54.23 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=84.2
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +-+.+|+.. +|.. -...++++.++++++
T Consensus 208 ~~~v~avR~a~G~~-~~l~vDan~----------------------------------~~~~---~~A~~~~~~l~~~~i 249 (421)
T 4hnl_A 208 LKMFAAIKEKYGNQ-FQMLHDVHE----------------------------------RLHP---NQAIQFAKAAEPYQL 249 (421)
T ss_dssp HHHHHHHHHHHTTS-SEEEEECTT----------------------------------CSCH---HHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhCCC-ceEeccccc----------------------------------cCCH---HHHHHHHHHhhhhhh
Confidence 46788888889865 777888643 1221 135778889999887
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
..+ +.=...-|++.++++++.+++||.+.--+.+..|++++++...++.+.+--.-..|-....++.+...+.
T Consensus 250 ~~i-------EeP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGite~~~ia~~A~~~ 322 (421)
T 4hnl_A 250 FFL-------EDILPPDQSHWLTQLRSQSATPIATGELFNNPMEWQELVKNRQIDFMRAHVSQIGGITPALKLAHFCDAM 322 (421)
T ss_dssp SEE-------ECCSCGGGGGGHHHHHTTCCCCEEECTTCCSGGGTHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHHHT
T ss_pred ccc-------ccCCcccchHHHHHHHhcCCCCeecCcceehhHHHHHHHhcCCceEEEeCCCCCCCHHHHHHHHHHHHHC
Confidence 543 1222233788899999999999999999999999999997444665553333333444466677788888
Q ss_pred CCeec
Q 045794 573 GIEVR 577 (578)
Q Consensus 573 ~i~v~ 577 (578)
|++|-
T Consensus 323 gi~v~ 327 (421)
T 4hnl_A 323 GVRIA 327 (421)
T ss_dssp TCEEC
T ss_pred CCeEE
Confidence 88763
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.44 Score=49.94 Aligned_cols=141 Identities=10% Similarity=0.059 Sum_probs=94.9
Q ss_pred HHHHHHHHHcCcce--eecchhhhccchhhhhccccCCchHHHHHHHhCC-CCeEEEEEeccccccCCCCccccceeeec
Q 045794 377 LEVASEYFRSGADK--ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG-NQAVVVSIDPRRVYITHPNDVEFKAVRVT 453 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~--vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~iv~slD~~~~~~~~~~~~~~~~~~~~ 453 (578)
.+.++++++.|... +=+|......+ .+.++.+.+.+| ++ +-+.+|+..
T Consensus 169 ~~~a~~~~~~G~~~~KlKvg~~~~~~d-----------~~~v~avR~a~gg~~-~~L~vDaN~----------------- 219 (391)
T 4e8g_A 169 ARIAAEKVAEGFPRLQIKIGGRPVEID-----------IETVRKVWERIRGTG-TRLAVDGNR----------------- 219 (391)
T ss_dssp HHHHHHHHHTTCSEEEEECCSSCHHHH-----------HHHHHHHHHHHTTTT-CEEEEECTT-----------------
T ss_pred HHHHHHHHHcCCcEEEEcCCCCCHHHH-----------HHHHHHHHHHhCCCC-CeEEEeCCC-----------------
Confidence 45677788888664 44464222211 367788888887 54 677888643
Q ss_pred cCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCC
Q 045794 454 DLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533 (578)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s 533 (578)
+|.. -+...++++++++++ .| = +- . .|++.++++++.+++||.+.--+.+
T Consensus 220 -----------------~w~~---~~A~~~~~~L~~~~i-~i--E----eP-~--~~~~~~~~l~~~~~iPIa~dE~~~~ 269 (391)
T 4e8g_A 220 -----------------SLPS---RDALRLSRECPEIPF-VL--E----QP-C--NTLEEIAAIRGRVQHGIYLDESGED 269 (391)
T ss_dssp -----------------CCCH---HHHHHHHHHCTTSCE-EE--E----SC-S--SSHHHHHHHGGGCCSCEEESTTCCS
T ss_pred -----------------CCCH---HHHHHHHHHHhhcCe-EE--e----cC-C--ccHHHHHHHHhhCCCCEEeCCCCCC
Confidence 2321 134566777777654 32 1 11 1 3899999999999999999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
..|++++++...++.+.+--....|-....++.+.+...|++|
T Consensus 270 ~~~~~~~~~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~ 312 (391)
T 4e8g_A 270 LSTVIRAAGQGLCDGFGMKLTRIGGLQQMAAFRDICEARALPH 312 (391)
T ss_dssp HHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeE
Confidence 9999999974456766644444445444666778888888876
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=93.21 E-value=0.051 Score=50.89 Aligned_cols=62 Identities=18% Similarity=0.138 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhh
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAG 553 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgs 553 (578)
.+...++.+.+...+.+=+. .|+ -.+.++++ +++|+|++|+|++.||+.+ ++ .||++|+.++
T Consensus 116 al~~~~~~I~~~kPD~iEiL--------Pg~v~p~~I~~v---~~~PiIaGGlI~t~edv~~-l~-aGA~aIsTs~ 178 (188)
T 1vkf_A 116 AVERGIEQIETLGVDVVEVL--------PGAVAPKVARKI---PGRTVIAAGLVETEEEARE-IL-KHVSAISTSS 178 (188)
T ss_dssp HHHHHHHHHHHHTCSEEEEE--------SGGGHHHHHTTS---TTSEEEEESCCCSHHHHHH-HT-TTSSEEEECC
T ss_pred HHhhhhhhccccCCCeEeec--------CCCchHHHHHHh---cCCCEEEECCcCCHHHHHH-HH-CCCeEEEeCC
Confidence 34556677777777765555 455 44666666 6899999999999999999 85 9999998665
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=93.04 E-value=0.11 Score=49.06 Aligned_cols=70 Identities=21% Similarity=0.351 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
+|.++. ...+.|++.+-+..-. ...++.++++.+.+ ++|+.+.|||+ .++ +.+++++
T Consensus 113 t~~e~~-~a~~~Gad~vk~~~~~---------~~g~~~~~~l~~~~~~~pvia~GGI~-~~~-----------~~~~~~~ 170 (205)
T 1wa3_A 113 TPTELV-KAMKLGHTILKLFPGE---------VVGPQFVKAMKGPFPNVKFVPTGGVN-LDN-----------VCEWFKA 170 (205)
T ss_dssp SHHHHH-HHHHTTCCEEEETTHH---------HHHHHHHHHHHTTCTTCEEEEBSSCC-TTT-----------HHHHHHH
T ss_pred CHHHHH-HHHHcCCCEEEEcCcc---------ccCHHHHHHHHHhCCCCcEEEcCCCC-HHH-----------HHHHHHC
Confidence 454544 4467899966532100 12367788888877 79999999997 555 9999999
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
||+.|++||..+.
T Consensus 171 Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 171 GVLAVGVGSALVK 183 (205)
T ss_dssp TCSCEEECHHHHC
T ss_pred CCCEEEECccccC
Confidence 9999999998886
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.069 Score=56.78 Aligned_cols=118 Identities=10% Similarity=0.040 Sum_probs=83.8
Q ss_pred hHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCc
Q 045794 414 SSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAG 493 (578)
Q Consensus 414 ~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~ 493 (578)
+.++.+.+.+|++ +-+.+|+.. +|.. -+...+++.++++|+.
T Consensus 216 e~v~avR~a~G~d-~~L~vDaN~----------------------------------~~~~---~~A~~~~~~L~~~~i~ 257 (426)
T 4e4f_A 216 KLFEAVRDKFGFN-EHLLHDMHH----------------------------------RLTP---IEAARFGKSVEDYRLF 257 (426)
T ss_dssp HHHHHHHHHHTTS-SEEEEECTT----------------------------------CSCH---HHHHHHHHHTGGGCCS
T ss_pred HHHHHHHHHhCCC-CEEEEECCC----------------------------------CCCH---HHHHHHHHHHhhcCCC
Confidence 5678888899865 667788532 2322 1356788888888876
Q ss_pred EEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCC
Q 045794 494 EILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEG 573 (578)
Q Consensus 494 ~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~ 573 (578)
.|= .-....|++.++++++.+++||.+.+.+.+.++++++++...++.+.+--....|.....++.+.+...|
T Consensus 258 ~iE-------eP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~GGit~~~~ia~~A~~~g 330 (426)
T 4e4f_A 258 WME-------DPTPAENQACFRLIRQHTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTITHAGGITGMRRIADFASLYQ 330 (426)
T ss_dssp EEE-------CCSCCSSGGGGHHHHTTCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTT
T ss_pred EEE-------CCCChHHHHHHHHHHhcCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcC
Confidence 551 1223347888999999999999999999999999999974456766544333344444566777888888
Q ss_pred Cee
Q 045794 574 IEV 576 (578)
Q Consensus 574 i~v 576 (578)
++|
T Consensus 331 i~v 333 (426)
T 4e4f_A 331 VRT 333 (426)
T ss_dssp CEE
T ss_pred CEE
Confidence 875
|
| >3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A | Back alignment and structure |
|---|
Probab=92.98 E-value=0.87 Score=45.54 Aligned_cols=178 Identities=11% Similarity=0.066 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHc----CCCeEEEEeccc-CCCC---CCC--CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChH
Q 045794 308 KPVELARQYYKE----GADEISFLNITG-FRDF---PLG--DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSL 377 (578)
Q Consensus 308 ~p~~~a~~~~~~----g~~~i~~~Dl~~-~~~~---~~~--~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~ 377 (578)
...++|+++.+. |+..++=.-.+- -+.. ..+ -..-++++++++++.++|+.- =+-+.++
T Consensus 32 ~~~e~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~Glp~~t--ev~d~~~--------- 100 (288)
T 3tml_A 32 MTIDTAGRLKEICEKLNVPFIYKSSYDKANRSSGKSFRGLGMDEGLRILSEVKRQLGLPVLT--DVHSIDE--------- 100 (288)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEECBC--------------CHHHHHHHHHHHHHHHCCCEEE--ECCSGGG---------
T ss_pred HHHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEE--EeCCHHH---------
Confidence 456788888875 776665444431 1100 111 124588899999999999853 2444443
Q ss_pred HHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCC
Q 045794 378 EVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGP 457 (578)
Q Consensus 378 ~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~ 457 (578)
++.+.+. +|.+-||+...++ .+++++++ +.|. -|++ +++
T Consensus 101 --v~~l~~~-vd~lkIgA~~~~n------------~~LLr~~a-~~gk-PVil----K~G-------------------- 139 (288)
T 3tml_A 101 --IEQVASV-VDVLQTPAFLCRQ------------TDFIHACA-RSGK-PVNI----KKG-------------------- 139 (288)
T ss_dssp --HHHHHHH-CSEEEECGGGTTC------------HHHHHHHH-TSSS-CEEE----ECC--------------------
T ss_pred --HHHHHHh-CCEEEECcccccC------------HHHHHHHH-ccCC-cEEE----eCC--------------------
Confidence 6666666 9999999977764 47788876 4542 1222 221
Q ss_pred CCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC------cEEEEeccCCCCCCCC--CCHHHHHHHHhhCCCcEEE--
Q 045794 458 NGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA------GEILLNCIDCDGQGKG--FDMDLIKLISDAVSIPVIA-- 527 (578)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~------~~ii~tdi~~dG~~~G--~d~~li~~l~~~~~ipVIa-- 527 (578)
...+--++...++.+.+.|. ..|+++.....=.+.- .|+..+..+++ +++||++
T Consensus 140 ---------------~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~~y~~~~~~vdl~~i~~lk~-~~~pV~~D~ 203 (288)
T 3tml_A 140 ---------------QFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGVSFGYNNLVSDMRSLAIMRE-TNAPVVFDA 203 (288)
T ss_dssp ---------------TTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEEECCEECSSSCEECCHHHHHHGGG-GSSCEEEEH
T ss_pred ---------------CCCCHHHHHHHHHHHHHcCCCccCCCCcEEEEeCCCCCCCCcCcCCHHHHHHHHh-cCCcEEEcC
Confidence 11112234566777777776 6677665433212333 38888888887 8999988
Q ss_pred -------------ecCCCCHH-HHHHHHHhcCchHHhhhh
Q 045794 528 -------------SSGAGAVE-HFSDVFRKTNASAALAAG 553 (578)
Q Consensus 528 -------------sGGi~s~e-Di~~l~~~~G~~gv~vgs 553 (578)
+||-+..- .+..+.-..||+|++|=+
T Consensus 204 sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GadGl~iE~ 243 (288)
T 3tml_A 204 THSVQLPGGQGTSSGGQREFVPVLARAAVATGVAGLFMET 243 (288)
T ss_dssp HHHTCCCC--------CTTHHHHHHHHHHHHCCSEEEEEE
T ss_pred CcccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEee
Confidence 24544332 222222236888777643
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=0.13 Score=53.55 Aligned_cols=79 Identities=25% Similarity=0.255 Sum_probs=55.7
Q ss_pred HHHHHHHHHcCCCeEEEEecccC--------CCC------------CCC-CchhHHHHHHHhhhc-cccEEEeCCccccc
Q 045794 310 VELARQYYKEGADEISFLNITGF--------RDF------------PLG-DLPMLQVLRLTSENV-FVPLTVGGGIRDFT 367 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~--------~~~------------~~~-~~~~~~~i~~i~~~~-~~pi~~gGGir~~~ 367 (578)
.+.|+.+.+.|++.|.+..--+. +.. ... ..+....+.++.+.+ .+||.+.|||++..
T Consensus 201 ~~~A~~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~~ipvia~GGI~~~~ 280 (368)
T 3vkj_A 201 METAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPDSFLVGSGGIRSGL 280 (368)
T ss_dssp HHHHHHHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHSTTCEEEEESSCCSHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHH
Confidence 37899999999997654322121 000 000 123345677777766 49999999999997
Q ss_pred cCCCCccChHHHHHHHHHcCcceeecchhhhc
Q 045794 368 DANGRHYSSLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 368 d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
| +.+.+.+||+-|.+|+..+.
T Consensus 281 d-----------~~kal~lGA~~v~ig~~~l~ 301 (368)
T 3vkj_A 281 D-----------AAKAIALGADIAGMALPVLK 301 (368)
T ss_dssp H-----------HHHHHHHTCSEEEECHHHHH
T ss_pred H-----------HHHHHHcCCCEEEEcHHHHH
Confidence 7 88888999999999997774
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=92.80 E-value=1.6 Score=42.02 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=86.1
Q ss_pred HHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHh
Q 045794 343 LQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRV 422 (578)
Q Consensus 343 ~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (578)
.+++..+.+.-=+||..+ .+.++ -++.++.+++.|++.+=+...... ..+.++++.++
T Consensus 8 ~~~~~~l~~~~ii~vir~---~~~~~-------~~~~~~al~~gGv~~iel~~k~~~------------~~~~i~~l~~~ 65 (224)
T 1vhc_A 8 QQIIEKLRELKIVPVIAL---DNADD-------ILPLADTLAKNGLSVAEITFRSEA------------AADAIRLLRAN 65 (224)
T ss_dssp HHHHHHHHHHCEEEEECC---SSGGG-------HHHHHHHHHHTTCCEEEEETTSTT------------HHHHHHHHHHH
T ss_pred HHHHHHHHHCCeEEEEeC---CCHHH-------HHHHHHHHHHcCCCEEEEeccCch------------HHHHHHHHHHh
Confidence 456666665444677554 23332 356789999999998877632111 13678889999
Q ss_pred CCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCC
Q 045794 423 YGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDC 502 (578)
Q Consensus 423 ~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~ 502 (578)
|+ + +.+..+. -+ ..+-++.+.+.|++.+..
T Consensus 66 ~~-~-l~vgaGt------------------------------------------vl-~~d~~~~A~~aGAd~v~~----- 95 (224)
T 1vhc_A 66 RP-D-FLIAAGT------------------------------------------VL-TAEQVVLAKSSGADFVVT----- 95 (224)
T ss_dssp CT-T-CEEEEES------------------------------------------CC-SHHHHHHHHHHTCSEEEC-----
T ss_pred Cc-C-cEEeeCc------------------------------------------Ee-eHHHHHHHHHCCCCEEEE-----
Confidence 96 3 3333321 11 136778888999998841
Q ss_pred CCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhh
Q 045794 503 DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALA 551 (578)
Q Consensus 503 dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~v 551 (578)
-+.|.+.++..++ .+.|++. |+.+++++.++.+ .|++.+.+
T Consensus 96 ----p~~d~~v~~~ar~-~g~~~i~--Gv~t~~e~~~A~~-~Gad~vk~ 136 (224)
T 1vhc_A 96 ----PGLNPKIVKLCQD-LNFPITP--GVNNPMAIEIALE-MGISAVKF 136 (224)
T ss_dssp ----SSCCHHHHHHHHH-TTCCEEC--EECSHHHHHHHHH-TTCCEEEE
T ss_pred ----CCCCHHHHHHHHH-hCCCEEe--ccCCHHHHHHHHH-CCCCEEEE
Confidence 1356777777666 7888887 3999999999985 89997764
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.78 Score=45.11 Aligned_cols=182 Identities=17% Similarity=0.106 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccCh--HHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSS--LEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~--~~~~~~~l 384 (578)
.+..++.+...+.|+..+.+ .. ......++..+..+++| +--| .+. -|..++. ...+++.+
T Consensus 59 ~~I~~lc~eA~~~~~aaVCV-~p-----------~~V~~a~~~L~gs~v~v--~tVi-gFP--~G~~~~~~Kv~Ea~~Ai 121 (260)
T 3r12_A 59 DDIKKLCLEARENRFHGVCV-NP-----------CYVKLAREELEGTDVKV--VTVV-GFP--LGANETRTKAHEAIFAV 121 (260)
T ss_dssp HHHHHHHHHHHHTTCSEEEE-CG-----------GGHHHHHHHHTTSCCEE--EEEE-STT--TCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEE-CH-----------HHHHHHHHHhcCCCCeE--EEEe-cCC--CCCCcHHHHHHHHHHHH
Confidence 36666777777788887764 22 12444454444334333 2222 121 1333332 33567788
Q ss_pred HcCccee--ecchhhhcc-chhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 385 RSGADKI--SIGSDAVYA-AEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 385 ~~Ga~~v--v~gt~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
+.||+-| +++-.++.+ +.+.+. +.+.++.+..+. .++-.|
T Consensus 122 ~~GAdEIDmViNig~lk~g~~~~v~-------~eI~~v~~a~~~-~~lKVI----------------------------- 164 (260)
T 3r12_A 122 ESGADEIDMVINVGMLKAKEWEYVY-------EDIRSVVESVKG-KVVKVI----------------------------- 164 (260)
T ss_dssp HHTCSEEEEECCHHHHHTTCHHHHH-------HHHHHHHHHTTT-SEEEEE-----------------------------
T ss_pred HcCCCEEEEEeehhhhccccHHHHH-------HHHHHHHHhcCC-CcEEEE-----------------------------
Confidence 9999865 445444432 223332 456666665542 222111
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC-CCCCHHHHHHHHhh--CCCcEEEecCCCCHHHHH
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG-KGFDMDLIKLISDA--VSIPVIASSGAGAVEHFS 538 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~-~G~d~~li~~l~~~--~~ipVIasGGi~s~eDi~ 538 (578)
+.-. ..++-.....++.+.+.|++.|= |+ .|.. .|..++-++.+++. ..++|-++|||++.+|+.
T Consensus 165 -------lEt~-~Lt~eei~~A~~ia~eaGADfVK-TS---TGf~~~GAT~edV~lm~~~vg~~v~VKaAGGIrt~~~al 232 (260)
T 3r12_A 165 -------IETC-YLDTEEKIAACVISKLAGAHFVK-TS---TGFGTGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAV 232 (260)
T ss_dssp -------CCGG-GCCHHHHHHHHHHHHHTTCSEEE-CC---CSSSSCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHH
T ss_pred -------EeCC-CCCHHHHHHHHHHHHHhCcCEEE-cC---CCCCCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHH
Confidence 1110 00111345677778899998654 44 3322 34444444444443 369999999999999999
Q ss_pred HHHHhcCch--HHhhhhhh
Q 045794 539 DVFRKTNAS--AALAAGIF 555 (578)
Q Consensus 539 ~l~~~~G~~--gv~vgsa~ 555 (578)
++++ .||+ |+..|..+
T Consensus 233 ~mi~-aGA~RiGtS~g~~I 250 (260)
T 3r12_A 233 KMIM-YGADRIGTSSGVKI 250 (260)
T ss_dssp HHHH-TTCSEEEESCHHHH
T ss_pred HHHH-cCCceeecchHHHH
Confidence 9996 9999 55544433
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=92.51 E-value=0.64 Score=44.99 Aligned_cols=71 Identities=17% Similarity=0.274 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCC--CCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCch--HHhhhh
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQG--KGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNAS--AALAAG 553 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~--~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~--gv~vgs 553 (578)
....++...+.|++.|= |+. |.. .|..++-++.+++.+ .++|-++|||++.+|+.++++ .|++ |+..|.
T Consensus 148 i~~a~~ia~~aGADfVK-TST---Gf~~~~gAt~edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i~-aGa~RiGtS~g~ 222 (231)
T 3ndo_A 148 LADVCRVARDAGADFVK-TST---GFHPSGGASVQAVEIMARTVGERLGVKASGGIRTAEQAAAMLD-AGATRLGLSGSR 222 (231)
T ss_dssp HHHHHHHHHHTTCSEEE-CCC---SCCTTCSCCHHHHHHHHHHHTTTSEEEEESSCCSHHHHHHHHH-TTCSEEEESSHH
T ss_pred HHHHHHHHHHHCcCEEE-cCC---CCCCCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHH-hcchhcccchHH
Confidence 45677777899998664 442 322 344455444444433 699999999999999999996 9998 655444
Q ss_pred hh
Q 045794 554 IF 555 (578)
Q Consensus 554 a~ 555 (578)
.+
T Consensus 223 ~I 224 (231)
T 3ndo_A 223 AV 224 (231)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.7 Score=48.27 Aligned_cols=116 Identities=15% Similarity=0.052 Sum_probs=78.9
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++++.+.+|++ +.+.+|+.. +|.. -+..++++.++++++
T Consensus 188 ~e~v~avR~~~g~d-~~l~vDan~----------------------------------~~~~---~~ai~~~~~l~~~~i 229 (392)
T 3p3b_A 188 IAIVRGISEVAGPA-GKIMIDANN----------------------------------AYNL---NLTKEVLAALSDVNL 229 (392)
T ss_dssp HHHHHHHHHHHCTT-CCEEEECTT----------------------------------CCCH---HHHHHHHHHTTTSCE
T ss_pred HHHHHHHHHHhCCC-CeEEEECCC----------------------------------CCCH---HHHHHHHHHHHhcCC
Confidence 37788888888865 556678532 2211 134567777777765
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHH
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDA-----VSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKE 567 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~-----~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~ 567 (578)
..+ . +. .. .|++.++++++. +++||.+.+ +.++++++++++...++.+.+--.-. |-....++.+
T Consensus 230 ~~i---E---~P-~~-~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik~~~~-Git~~~~i~~ 299 (392)
T 3p3b_A 230 YWL---E---EA-FH-EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYDIIWP-GFTHWMELGE 299 (392)
T ss_dssp EEE---E---CS-SS-CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCBTTTB-CHHHHHHHHH
T ss_pred CEE---e---cC-Cc-ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeCcccc-CHHHHHHHHH
Confidence 422 1 22 23 689999999988 899999999 99999999999744477666433333 4333456677
Q ss_pred HHHhCCCee
Q 045794 568 HLYKEGIEV 576 (578)
Q Consensus 568 ~l~~~~i~v 576 (578)
..++.|++|
T Consensus 300 ~A~~~gi~~ 308 (392)
T 3p3b_A 300 KLDAHGLRS 308 (392)
T ss_dssp HHHHTTCEE
T ss_pred HHHHcCCEE
Confidence 788888876
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=92.46 E-value=0.32 Score=49.65 Aligned_cols=94 Identities=18% Similarity=0.356 Sum_probs=59.2
Q ss_pred HHHHHHHH--HHcCCcEEEEecc-CC---CCCCCC---CCH----HHHHHHHhhCCCcEE-EecCCCCHHHHHHHHH---
Q 045794 480 AYELAKAV--EDLGAGEILLNCI-DC---DGQGKG---FDM----DLIKLISDAVSIPVI-ASSGAGAVEHFSDVFR--- 542 (578)
Q Consensus 480 ~~e~~~~~--~~~G~~~ii~tdi-~~---dG~~~G---~d~----~li~~l~~~~~ipVI-asGGi~s~eDi~~l~~--- 542 (578)
+...++.+ .++|+|-+=+-.- +. +|...| ++. +.++++.+.+.+|+| .|||+ +.+++.+.++
T Consensus 190 V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG~-~~~~fl~~v~~A~ 268 (332)
T 3iv3_A 190 VNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAGV-SAELFQETLVFAH 268 (332)
T ss_dssp HHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTTC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcCCCCEEEECCCC-CHHHHHHHHHHHH
Confidence 45677777 6779986654321 11 133222 222 346777788899976 69998 4555554432
Q ss_pred hcCc--hHHhhhhhhccCCCCH------HHHHHHHHhCCC
Q 045794 543 KTNA--SAALAAGIFHRKEVPI------QSVKEHLYKEGI 574 (578)
Q Consensus 543 ~~G~--~gv~vgsa~~~~~~~~------~~~~~~l~~~~i 574 (578)
..|+ .||++|+++.+..+.. +..+++|..+|.
T Consensus 269 ~aGa~f~Gv~~GRnvwq~~v~~~~~~~~~~~~~~l~~~g~ 308 (332)
T 3iv3_A 269 KAGAKFNGVLCGRATWAGSVQVYMEEGKEAARQWLRTSGL 308 (332)
T ss_dssp HHTCCCCEEEECHHHHTTHHHHHHHHCHHHHHHHHTTHHH
T ss_pred HcCCCcceEEeeHHHHHhhhhhhccccHHHHHHHHHHHhH
Confidence 2688 9999999997765432 356667766553
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=92.39 E-value=0.1 Score=55.04 Aligned_cols=90 Identities=7% Similarity=-0.071 Sum_probs=58.2
Q ss_pred HHHHHHHH---HHcC--CCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 309 PVELARQY---YKEG--ADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 309 p~~~a~~~---~~~g--~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
-.++++.+ .+.| ++.||+..-................++.+.+.+.+||..-|||.+.+| +++.
T Consensus 263 ~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~~~~~~~~~~~~ir~~~~~PvI~~Ggi~~~~d-----------A~~~ 331 (407)
T 3tjl_A 263 FSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIWKGVILKAGNYSYDAP-----------EFKT 331 (407)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEEECTTEETTEECCGGGCCCCSHHHHHHCCSEEEEESCGGGGTT-----------TTHH
T ss_pred HHHHHHHHHhHhhcCCceeEEEEEccccCCCCcCCccchhHHHHHHHHHhCCCEEecCCCCCHHH-----------HHHH
Confidence 36788999 7789 999999853211000000000012234444556789999999999876 4444
Q ss_pred HH----cCcceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 384 FR----SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 384 l~----~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
++ -+||-|.+|..++.| |++.+++.+
T Consensus 332 i~~~~~g~aDlVa~GR~~iaN------------PdL~~ri~~ 361 (407)
T 3tjl_A 332 LKEDIADKRTLVGFSRYFTSN------------PNLVWKLRD 361 (407)
T ss_dssp HHHHHTTSSEEEECSHHHHHC------------TTHHHHHHH
T ss_pred HHhhccCCCeEEEeChhhhhC------------chHHHHHHc
Confidence 44 469999999999984 477778765
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=92.38 E-value=2.4 Score=44.15 Aligned_cols=195 Identities=15% Similarity=0.142 Sum_probs=114.1
Q ss_pred HHHHHHHHHHcCCCeEEEEecc--cCCCC--CCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 309 PVELARQYYKEGADEISFLNIT--GFRDF--PLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~--~~~~~--~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
..++|+.+.+.|++.+-+-=.+ ..... ..+ ..-++.+++++++.++|+.. =+-+.++ ++.+.
T Consensus 158 a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~-~egl~~L~~~~~~~Gl~~~t--e~~d~~~-----------~~~l~ 223 (385)
T 3nvt_A 158 VAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLG-LEGLKILKRVSDEYGLGVIS--EIVTPAD-----------IEVAL 223 (385)
T ss_dssp HHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCT-HHHHHHHHHHHHHHTCEEEE--ECCSGGG-----------HHHHT
T ss_pred HHHHHHHHHHcCCCeEEcccccCCCChHhhcCCC-HHHHHHHHHHHHHcCCEEEE--ecCCHHH-----------HHHHH
Confidence 4667888888999844321111 00000 011 35577888888889999864 3445444 66776
Q ss_pred HcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
+. ++.+-||+...++ .+++++++ +.|. -|++ +++
T Consensus 224 ~~-vd~lkIgs~~~~n------------~~LL~~~a-~~gk-PVil----k~G--------------------------- 257 (385)
T 3nvt_A 224 DY-VDVIQIGARNMQN------------FELLKAAG-RVDK-PILL----KRG--------------------------- 257 (385)
T ss_dssp TT-CSEEEECGGGTTC------------HHHHHHHH-TSSS-CEEE----ECC---------------------------
T ss_pred hh-CCEEEECcccccC------------HHHHHHHH-ccCC-cEEE----ecC---------------------------
Confidence 66 9999999877764 47788875 4553 2333 111
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc-CCC--C-CCCCCCHHHHHHHHhhCCCcEEEe----cCCCCHH-
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI-DCD--G-QGKGFDMDLIKLISDAVSIPVIAS----SGAGAVE- 535 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi-~~d--G-~~~G~d~~li~~l~~~~~ipVIas----GGi~s~e- 535 (578)
...+--++...++.+.+.|...|++... .+. . ...-.|+..+..+++.+++||+.- +|-+..-
T Consensus 258 --------~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~~lpV~~D~th~~G~r~~v~ 329 (385)
T 3nvt_A 258 --------LSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKETHLPVMVDVTHSTGRKDLLL 329 (385)
T ss_dssp --------TTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEEEHHHHHCCGGGHH
T ss_pred --------CCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhcCCCEEEcCCCCCCccchHH
Confidence 1011112345566667778877776654 222 1 234468888889988889999543 3333221
Q ss_pred HHHHHHHhcCchHHhhhh------hhcc--CCCCHHHHHHHHHh
Q 045794 536 HFSDVFRKTNASAALAAG------IFHR--KEVPIQSVKEHLYK 571 (578)
Q Consensus 536 Di~~l~~~~G~~gv~vgs------a~~~--~~~~~~~~~~~l~~ 571 (578)
.+..+.-..||+|++|=+ ++.+ ..+.+.++++.+++
T Consensus 330 ~~a~AAvA~GA~gl~iE~H~~pd~a~~D~~~sl~p~el~~lv~~ 373 (385)
T 3nvt_A 330 PCAKAALAIEADGVMAEVHPDPAVALSDSAQQMDIPEFEEFWNA 373 (385)
T ss_dssp HHHHHHHHTTCSEEEEEBCSCGGGCSSCTTTSBCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEecCChhhcCCcccccCCHHHHHHHHHH
Confidence 222222247999888755 3333 23567777776653
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=92.37 E-value=0.67 Score=44.02 Aligned_cols=72 Identities=24% Similarity=0.249 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+|.|+.+. .+.|+|.|-+.= + ...+ -++.++.+++.+ .+|+..-|||.. ++ +.++++
T Consensus 112 ~t~~e~~~A-~~~Gad~v~~fp--a---~~~g---G~~~lk~l~~~~~~ipvvaiGGI~~-~n-----------~~~~l~ 170 (207)
T 2yw3_A 112 LTPTEVERA-LALGLSALKFFP--A---EPFQ---GVRVLRAYAEVFPEVRFLPTGGIKE-EH-----------LPHYAA 170 (207)
T ss_dssp CSHHHHHHH-HHTTCCEEEETT--T---TTTT---HHHHHHHHHHHCTTCEEEEBSSCCG-GG-----------HHHHHT
T ss_pred CCHHHHHHH-HHCCCCEEEEec--C---cccc---CHHHHHHHHhhCCCCcEEEeCCCCH-HH-----------HHHHHh
Confidence 367776554 467999887721 1 1110 257788888877 799999999984 54 999999
Q ss_pred cCcceeecchhhhc
Q 045794 386 SGADKISIGSDAVY 399 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~ 399 (578)
+|++.|++||+.+.
T Consensus 171 aGa~~vavgSai~~ 184 (207)
T 2yw3_A 171 LPNLLAVGGSWLLQ 184 (207)
T ss_dssp CSSBSCEEESGGGS
T ss_pred CCCcEEEEehhhhC
Confidence 99999999998775
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=92.26 E-value=0.46 Score=45.89 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCC-cEEEecCCCCH-HHHHHHHHhcCchHHhhhhhhccC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSI-PVIASSGAGAV-EHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~i-pVIasGGi~s~-eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
..+++...+.|++.+++-. ...+.++++++.++- ..|..+||+-. .+. ++. +.|++.+++|++++..
T Consensus 140 ~~~a~~a~~~G~~GvV~~a---------t~~~e~~~ir~~~~~~~~iv~PGI~~~g~~p-~~~-~aGad~iVvGr~I~~a 208 (228)
T 3m47_A 140 DEIARMGVDLGVKNYVGPS---------TRPERLSRLREIIGQDSFLISPGVGAQGGDP-GET-LRFADAIIVGRSIYLA 208 (228)
T ss_dssp HHHHHHHHHTTCCEEECCS---------SCHHHHHHHHHHHCSSSEEEECC----------CG-GGTCSEEEECHHHHTS
T ss_pred HHHHHHHHHhCCcEEEECC---------CChHHHHHHHHhcCCCCEEEecCcCcCCCCH-hHH-HcCCCEEEECHHHhCC
Confidence 4577778888988776421 134566677766542 34577888643 256 666 4899999999999876
Q ss_pred CCCHHHHHHH
Q 045794 559 EVPIQSVKEH 568 (578)
Q Consensus 559 ~~~~~~~~~~ 568 (578)
+-+...+++.
T Consensus 209 ~dp~~a~~~~ 218 (228)
T 3m47_A 209 DNPAAAAAGA 218 (228)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6544444433
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.31 Score=48.00 Aligned_cols=71 Identities=24% Similarity=0.290 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcce
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~ 390 (578)
..++.-.+.|||.|=-- .|... ......+.+++++... ..++|-+.||||+.+| +.+++++||+|
T Consensus 177 ~A~~ia~eaGADfVKTS--TGf~~-~GAT~edV~lm~~~vg-~~v~VKaAGGIrt~~~-----------al~mi~aGA~R 241 (260)
T 3r12_A 177 AACVISKLAGAHFVKTS--TGFGT-GGATAEDVHLMKWIVG-DEMGVKASGGIRTFED-----------AVKMIMYGADR 241 (260)
T ss_dssp HHHHHHHHTTCSEEECC--CSSSS-CCCCHHHHHHHHHHHC-TTSEEEEESSCCSHHH-----------HHHHHHTTCSE
T ss_pred HHHHHHHHhCcCEEEcC--CCCCC-CCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHH-----------HHHHHHcCCce
Confidence 34455567899954311 23211 1112234444444432 3689999999999876 99999999998
Q ss_pred eecchhhh
Q 045794 391 ISIGSDAV 398 (578)
Q Consensus 391 vv~gt~~~ 398 (578)
+ ||..-
T Consensus 242 i--GtS~g 247 (260)
T 3r12_A 242 I--GTSSG 247 (260)
T ss_dssp E--EESCH
T ss_pred e--ecchH
Confidence 5 55433
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=2.4 Score=42.20 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=94.9
Q ss_pred HHHHHHHHHHc----CCCeEEEEeccc---CCC-CCCCC--chhHHHHHHHhhhccccEEEeCCccccccCCCCccChHH
Q 045794 309 PVELARQYYKE----GADEISFLNITG---FRD-FPLGD--LPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLE 378 (578)
Q Consensus 309 p~~~a~~~~~~----g~~~i~~~Dl~~---~~~-~~~~~--~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~ 378 (578)
..++|+++.+. +...++-.-.+- +.- +..+- ..-++++++++++.++|+.- =+-+.++
T Consensus 36 ~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~L~~~~~e~Glp~~T--ev~d~~~---------- 103 (285)
T 3sz8_A 36 TLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVIT--DVHEAEQ---------- 103 (285)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCCEEE--ECCSGGG----------
T ss_pred HHHHHHHHHHHHHhheeeeEEEeecccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEE--EeCCHHH----------
Confidence 35678888765 465555555542 211 11111 24588899999999999853 3444443
Q ss_pred HHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCC
Q 045794 379 VASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPN 458 (578)
Q Consensus 379 ~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (578)
++.+.+. +|.+-||+...++ .++++++++ .|. -|++ +++.
T Consensus 104 -v~~l~~~-vd~lqIgA~~~~n------------~~LLr~va~-~gk-PVil----K~G~-------------------- 143 (285)
T 3sz8_A 104 -AAPVAEI-ADVLQVPAFLARQ------------TDLVVAIAK-AGK-PVNV----KKPQ-------------------- 143 (285)
T ss_dssp -HHHHHTT-CSEEEECGGGTTC------------HHHHHHHHH-TSS-CEEE----ECCT--------------------
T ss_pred -HHHHHHh-CCEEEECccccCC------------HHHHHHHHc-cCC-cEEE----eCCC--------------------
Confidence 6667676 9999999977764 478888774 542 2332 2221
Q ss_pred CCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC--CCHHHHHHHHhhC-CCcEEE
Q 045794 459 GEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG--FDMDLIKLISDAV-SIPVIA 527 (578)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G--~d~~li~~l~~~~-~ipVIa 527 (578)
..+--++...++.+.+.|...|+++.....=.+.- .|+..+..+++.+ ++||++
T Consensus 144 ---------------~~t~~ei~~ave~i~~~Gn~~i~L~erg~~y~~~~~~vdl~~i~~lk~~~~~~pV~~ 200 (285)
T 3sz8_A 144 ---------------FMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIF 200 (285)
T ss_dssp ---------------TSCGGGTHHHHHHHHHTTCCCEEEEECCEECSSSCEECCTTHHHHHHHHTTSCCEEE
T ss_pred ---------------CCCHHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCcCccCHHHHHHHHHhCCCCCEEE
Confidence 00111346677788888988888765433211222 4788888898888 599998
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=0.13 Score=53.29 Aligned_cols=53 Identities=15% Similarity=0.076 Sum_probs=41.7
Q ss_pred hHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 342 MLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 342 ~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
.+++++++.+.+ .+||..-|||.|.+| +.+.+.+||+-|-|+|+.+...|..+
T Consensus 264 a~~~v~~~~~~~~~~pIIg~GGI~s~~D-----------a~e~i~aGAs~Vqv~Ta~~y~GP~~~ 317 (354)
T 3tjx_A 264 ALANINAFYRRCPGKLIFGCGGVYTGED-----------AFLHVLAGASMVQVGTALQEEGPSIF 317 (354)
T ss_dssp HHHHHHHHHHHCTTSEEEEESSCCSHHH-----------HHHHHHHTEEEEEECHHHHHHCTTHH
T ss_pred HHHHHHHHHHhcCCCcEEEeCCcCCHHH-----------HHHHHHcCCCEEEEChhhhhcCchHH
Confidence 456677776665 689988899999977 88888999999999999876544443
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=92.04 E-value=0.23 Score=52.28 Aligned_cols=119 Identities=13% Similarity=0.060 Sum_probs=81.2
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +.+.+|+.. +|... +...++++++++++
T Consensus 197 ~~~v~avR~a~g~~-~~l~vDaN~----------------------------------~~~~~---~A~~~~~~L~~~~i 238 (400)
T 4dxk_A 197 LEPFEKIRKAVGDK-MDIMVEFHS----------------------------------MWQLL---PAMQIAKALTPYQT 238 (400)
T ss_dssp HHHHHHHHHHHGGG-SEEEEECTT----------------------------------CBCHH---HHHHHHHHTGGGCC
T ss_pred HHHHHHHHHHcCCC-ceEEEECCC----------------------------------CCCHH---HHHHHHHHHhhcCC
Confidence 36788888889854 667778532 23221 35678888888887
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
..|= .-....|++.++++++.+++||.+...+.+.++++++++...++.+.+--....|-.....+.+.....
T Consensus 239 ~~iE-------eP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~d~~~~GGit~~~kia~~A~~~ 311 (400)
T 4dxk_A 239 FWHE-------DPIKMDSLSSLTRYAAVSPAPISASETLGSRWAFRDLLETGAAGVVMLDISWCGGLSEARKIASMAEAW 311 (400)
T ss_dssp SEEE-------CCBCTTSGGGHHHHHHHCSSCEEECTTCCHHHHHHHHHHTTCCCEEEECTTTTTHHHHHHHHHHHHHHT
T ss_pred CEEE-------cCCCcccHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHc
Confidence 5442 112223788899999999999999999999999999997434665553333333433455677778888
Q ss_pred CCee
Q 045794 573 GIEV 576 (578)
Q Consensus 573 ~i~v 576 (578)
|++|
T Consensus 312 gi~~ 315 (400)
T 4dxk_A 312 HLPV 315 (400)
T ss_dssp TCCE
T ss_pred CCEE
Confidence 8876
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=92.02 E-value=0.3 Score=51.34 Aligned_cols=140 Identities=15% Similarity=0.157 Sum_probs=95.0
Q ss_pred HHHHHHHHHc-Ccc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeec
Q 045794 377 LEVASEYFRS-GAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVT 453 (578)
Q Consensus 377 ~~~~~~~l~~-Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~ 453 (578)
.+.++++++. |.. |+=+|.. ... ..+.++.+.+.+ ++ +.+.+|+..
T Consensus 173 ~~~a~~~~~~~G~~~~K~KvG~~-~~~-----------d~~~v~avR~~~-~~-~~l~vDaN~----------------- 221 (398)
T 4dye_A 173 AEHAVRVVEEGGFDAVKLKGTTD-CAG-----------DVAILRAVREAL-PG-VNLRVDPNA----------------- 221 (398)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSC-HHH-----------HHHHHHHHHHHC-TT-SEEEEECTT-----------------
T ss_pred HHHHHHHHHhcCCCEEEEecCCC-HHH-----------HHHHHHHHHHhC-CC-CeEEeeCCC-----------------
Confidence 3457778887 866 4444621 111 136788888888 43 667788543
Q ss_pred cCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCC
Q 045794 454 DLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533 (578)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s 533 (578)
+|.. -+...++++++++++..| +.=.. |++.++++++.+++||.+..-+.+
T Consensus 222 -----------------~w~~---~~A~~~~~~l~~~~i~~i-------EqP~~--d~~~~~~l~~~~~iPIa~dE~~~~ 272 (398)
T 4dye_A 222 -----------------AWSV---PDSVRAGIALEELDLEYL-------EDPCV--GIEGMAQVKAKVRIPLCTNMCVVR 272 (398)
T ss_dssp -----------------CSCH---HHHHHHHHHHGGGCCSEE-------ECCSS--HHHHHHHHHHHCCSCEEESSSCCS
T ss_pred -----------------CCCH---HHHHHHHHHHhhcCCCEE-------cCCCC--CHHHHHHHHhhCCCCEEeCCcCCC
Confidence 2322 135678888989887655 11122 899999999999999999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
..+++++++...++.+.+--.-..|-....++.+.+...|++|
T Consensus 273 ~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~ 315 (398)
T 4dye_A 273 FEDFAPAMRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGM 315 (398)
T ss_dssp GGGHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeE
Confidence 9999999974456666544444445445666777788888876
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.94 E-value=0.46 Score=50.61 Aligned_cols=142 Identities=14% Similarity=0.059 Sum_probs=94.9
Q ss_pred HHHHHHHHcCccee--ecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccC
Q 045794 378 EVASEYFRSGADKI--SIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDL 455 (578)
Q Consensus 378 ~~~~~~l~~Ga~~v--v~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~ 455 (578)
+.++++++.|...+ =+|...-. ..+.++.+.+.+|++ +-+.+|+..
T Consensus 207 ~~a~~~~~~Gf~~~KlKvG~~~~~------------d~~~v~avR~a~G~~-~~l~vDaN~------------------- 254 (441)
T 4a35_A 207 QLCAQALKDGWTRFKVKVGADLQD------------DMRRCQIIRDMIGPE-KTLMMDANQ------------------- 254 (441)
T ss_dssp HHHHHHHHTTCCEEEEECSSCHHH------------HHHHHHHHHHHHCTT-SEEEEECTT-------------------
T ss_pred HHHHHHHHCCCCEEEEcCCCCHHH------------HHHHHHHHHHHhCCC-CeEEEECCC-------------------
Confidence 45777888887643 44542111 136788888999865 667788543
Q ss_pred CCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhh---CCCcEEEecCCC
Q 045794 456 GPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDA---VSIPVIASSGAG 532 (578)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~---~~ipVIasGGi~ 532 (578)
+|.. -+..+++++++++++..| +.=...-|++.++++++. +++||.+.--+.
T Consensus 255 ---------------~~~~---~~A~~~~~~L~~~~~~~i-------EeP~~~~d~~~~~~l~~~l~~~~iPIa~gE~~~ 309 (441)
T 4a35_A 255 ---------------RWDV---PEAVEWMSKLAKFKPLWI-------EEPTSPDDILGHATISKALVPLGIGIATGEQCH 309 (441)
T ss_dssp ---------------CCCH---HHHHHHHHHHGGGCCSEE-------ECCSCTTCHHHHHHHHHHHGGGTCEEEECTTCC
T ss_pred ---------------CCCH---HHHHHHHHhhcccCccEE-------eCCCCcccHHHHHHHHHhccCCCCCEEeCCccc
Confidence 2322 135788899998887544 222233478999999886 789999999999
Q ss_pred CHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 533 AVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 533 s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+..+++++++...++.+.+--....|-.....+...+...|++|
T Consensus 310 ~~~~~~~~l~~~a~div~~d~~~~GGit~~~kia~lA~~~gv~v 353 (441)
T 4a35_A 310 NRVIFKQLLQAKALQFLQIDSCRLGSVNENLSVLLMAKKFEIPV 353 (441)
T ss_dssp SHHHHHHHHHTTCCSEECCCTTTSSHHHHHHHHHHHHHHTTCCB
T ss_pred cHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEE
Confidence 99999999974456655533333333444566777777778776
|
| >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A | Back alignment and structure |
|---|
Probab=91.88 E-value=1.4 Score=44.23 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=90.5
Q ss_pred hhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHH
Q 045794 341 PMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS 420 (578)
Q Consensus 341 ~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (578)
.-++.+++++++.++|+.. =+-+.++ ++.+.+ .++..-||+...++ .+++++++
T Consensus 76 ~gl~~l~~~~~~~Glp~~t--e~~d~~~-----------~~~l~~-~vd~~kIgA~~~~n------------~~Ll~~~a 129 (292)
T 1o60_A 76 EGLKIFQELKDTFGVKIIT--DVHEIYQ-----------CQPVAD-VVDIIQLPAFLARQ------------TDLVEAMA 129 (292)
T ss_dssp HHHHHHHHHHHHHCCEEEE--ECCSGGG-----------HHHHHT-TCSEEEECGGGTTC------------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEE--ecCCHHH-----------HHHHHh-cCCEEEECcccccC------------HHHHHHHH
Confidence 4577888888889999854 3344433 655555 79999999977774 47889987
Q ss_pred HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc
Q 045794 421 RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI 500 (578)
Q Consensus 421 ~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi 500 (578)
+.|. -|++ +++ ...+--.+...++.+...|...+++.-.
T Consensus 130 -~~~k-PV~l----k~G-----------------------------------~~~t~~ei~~Av~~i~~~Gn~~i~L~~r 168 (292)
T 1o60_A 130 -KTGA-VINV----KKP-----------------------------------QFLSPSQMGNIVEKIEECGNDKIILCDR 168 (292)
T ss_dssp -HTTC-EEEE----ECC-----------------------------------TTSCGGGHHHHHHHHHHTTCCCEEEEEC
T ss_pred -cCCC-cEEE----eCC-----------------------------------CCCCHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 4542 2332 222 1101114566777788899877776654
Q ss_pred CCCCCCCC--CCHHHHHHHHhhC-CCcEEE-e--------------cCCCCH-HHHHHHHHhcCchHHhhhhh
Q 045794 501 DCDGQGKG--FDMDLIKLISDAV-SIPVIA-S--------------SGAGAV-EHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 501 ~~dG~~~G--~d~~li~~l~~~~-~ipVIa-s--------------GGi~s~-eDi~~l~~~~G~~gv~vgsa 554 (578)
...-.+.- .|+..+..+++.. ..||++ + +|.+.. ..+..+.-..|++|++|=+=
T Consensus 169 g~~~~y~~~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva~Ga~Gl~IE~H 241 (292)
T 1o60_A 169 GTNFGYDNLIVDMLGFSVMKKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAH 241 (292)
T ss_dssp CEECSTTCEECCTTHHHHHHHHTTSCCEEEEHHHHCC------------CTTHHHHHHHHHHHCCSEEEEEEE
T ss_pred CCCCCCCccccCHHHHHHHHhhCCCCCEEEECCCcccccCccccCCCCChhHHHHHHHHHHHcCCCEEEEEec
Confidence 32212222 4888888888887 899999 2 332211 23433333479998887663
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=91.83 E-value=0.17 Score=51.43 Aligned_cols=80 Identities=20% Similarity=0.266 Sum_probs=54.2
Q ss_pred hHHHHHHHhhhccccEE--EeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhh--ccchhhhh-----ccccCC
Q 045794 342 MLQVLRLTSENVFVPLT--VGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAV--YAAEDYLK-----TGVKTG 412 (578)
Q Consensus 342 ~~~~i~~i~~~~~~pi~--~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~--~~~~~~~~-----~~~~~~ 412 (578)
.+++++++.+...+|+. .-|||.+.+| +.+++++|||.|.+|++.+ .|+....+ -....+
T Consensus 228 ~lell~~i~~~~~IPVV~VAeGGI~Tped-----------a~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ai~~~~~ 296 (330)
T 2yzr_A 228 LYEVLLEVKKLGRLPVVNFAAGGVATPAD-----------AALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYNYDK 296 (330)
T ss_dssp HHHHHHHHHHHTSCSSEEEECSCCCSHHH-----------HHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHhCCCCeEEEEECCCCCHHH-----------HHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 35889999887889995 5699999876 9999999999999999998 43321110 011245
Q ss_pred chHHHHHHHhCCCCeEEEEEec
Q 045794 413 KSSLEQISRVYGNQAVVVSIDP 434 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~ 434 (578)
|+.+.++++-.|. -+..+|+
T Consensus 297 ~~~~~~~s~~~~~--~m~g~~~ 316 (330)
T 2yzr_A 297 PDIVAEVSKNLGE--AMKGIDI 316 (330)
T ss_dssp HHHHHHHHTTCCC--CCCC---
T ss_pred HHHHHHHHhcccc--cCcCccc
Confidence 6666666666652 3444443
|
| >4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A | Back alignment and structure |
|---|
Probab=91.78 E-value=0.087 Score=49.60 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=32.4
Q ss_pred CCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhC-CCCEEEEechHHHHhh
Q 045794 85 NANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEK-DRPFLGICLGLQLLFQ 135 (578)
Q Consensus 85 ~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~-g~PIlGIClG~QlLa~ 135 (578)
+||+||||||......+. ....+.++++++.++ ++++-.||.|..++..
T Consensus 73 ~yD~lvvPGG~~~~~~l~--~~~~l~~~l~~~~~~~~k~iaaiC~g~~l~~a 122 (194)
T 4gdh_A 73 QYDIAIIPGGGLGAKTLS--TTPFVQQVVKEFYKKPNKWIGMICAGTLTAKT 122 (194)
T ss_dssp HCSEEEECCCHHHHHHHH--TCHHHHHHHHHHTTCTTCEEEEEGGGGHHHHH
T ss_pred cCCEEEECCCchhHhHhh--hCHHHHHHHHHhhhcCCceEEeecccccchhh
Confidence 489999999842111111 122467888887654 7899999999854443
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=1.8 Score=44.56 Aligned_cols=193 Identities=17% Similarity=0.161 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHcCCCeEEEE--ecc----cCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 308 KPVELARQYYKEGADEISFL--NIT----GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~--Dl~----~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
-..++|+.+.+.|++-+-+- .-. +.++ .+ ..-++.+++.+++.++|+.. =+-+.++ ++
T Consensus 121 ~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~g--lg-~egl~~l~~~~~e~Gl~~~t--e~~d~~~-----------~~ 184 (350)
T 1vr6_A 121 MLMETAHFLSELGVKVLRGGAYKPRTSPYSFQG--LG-EKGLEYLREAADKYGMYVVT--EALGEDD-----------LP 184 (350)
T ss_dssp HHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCC--CT-HHHHHHHHHHHHHHTCEEEE--ECSSGGG-----------HH
T ss_pred HHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcC--CC-HHHHHHHHHHHHHcCCcEEE--EeCCHHH-----------HH
Confidence 34567888888999854221 111 1111 11 46688899999999999864 3444443 66
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
.+.+. ++.+-||+...++ .++++++++ .|. -|++ +++
T Consensus 185 ~l~~~-vd~lkIgAr~~~n------------~~LL~~va~-~~k-PVil----k~G------------------------ 221 (350)
T 1vr6_A 185 KVAEY-ADIIQIGARNAQN------------FRLLSKAGS-YNK-PVLL----KRG------------------------ 221 (350)
T ss_dssp HHHHH-CSEEEECGGGTTC------------HHHHHHHHT-TCS-CEEE----ECC------------------------
T ss_pred HHHHh-CCEEEECcccccC------------HHHHHHHHc-cCC-cEEE----cCC------------------------
Confidence 67677 8999999977774 478889873 442 1332 221
Q ss_pred cceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEec--c-CCCC-CCCCCCHHHHHHHHhhCCCcEEE-ec---CCCC
Q 045794 462 YAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNC--I-DCDG-QGKGFDMDLIKLISDAVSIPVIA-SS---GAGA 533 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~td--i-~~dG-~~~G~d~~li~~l~~~~~ipVIa-sG---Gi~s 533 (578)
...+--++...++.+.+.|...+++.. + +-.+ +..-.|+..+..+++.+.+||+. +. |-+.
T Consensus 222 -----------~~~tl~ei~~Ave~i~~~GN~~viLceRG~~typ~~~~~~vdl~ai~~lk~~~~lpVi~dssHs~G~~~ 290 (350)
T 1vr6_A 222 -----------FMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRD 290 (350)
T ss_dssp -----------TTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECHHHHHCSGG
T ss_pred -----------CCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcChhhhhHHHHHHHHHhhCCCEEEeCCCCCcccc
Confidence 000001234455566678876666642 2 1112 13345888888898888899966 33 4332
Q ss_pred H-HHHHHHHHhcCchHHhhhhhh--------ccCCCCHHHHHHHHH
Q 045794 534 V-EHFSDVFRKTNASAALAAGIF--------HRKEVPIQSVKEHLY 570 (578)
Q Consensus 534 ~-eDi~~l~~~~G~~gv~vgsa~--------~~~~~~~~~~~~~l~ 570 (578)
. ..+..+.-..||+|+++=+=+ +...+.++++++.++
T Consensus 291 ~v~~~a~AAvA~GA~Gl~IE~H~~pd~al~D~~~sL~p~e~~~lv~ 336 (350)
T 1vr6_A 291 LVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQ 336 (350)
T ss_dssp GHHHHHHHHHHHTCSEEEEEBCSCGGGCSSCGGGCBCHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCEEEEEecCCcccCCCchhhcCCHHHHHHHHH
Confidence 1 122222223799988876532 123356777776664
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.38 Score=50.69 Aligned_cols=115 Identities=14% Similarity=0.189 Sum_probs=82.7
Q ss_pred hHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCc
Q 045794 414 SSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAG 493 (578)
Q Consensus 414 ~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~ 493 (578)
+.++.+.+.+|++ +.+.+|+.. +|.. -+..+++++++++|+.
T Consensus 201 e~v~avR~avG~d-~~l~vDaN~----------------------------------~~~~---~~A~~~~~~L~~~~i~ 242 (409)
T 3go2_A 201 AHLEALRDGAGPD-VEILLDLNF----------------------------------NAKP---EGYLKILRELADFDLF 242 (409)
T ss_dssp HHHHHHHHHHCTT-SEEEEECTT----------------------------------CSCH---HHHHHHHHHTTTSCCS
T ss_pred HHHHHHHHHhCCC-CEEEEECCC----------------------------------CCCH---HHHHHHHHHHhhcCCe
Confidence 6788888889865 567778532 2321 1356788888888876
Q ss_pred EEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCC
Q 045794 494 EILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEG 573 (578)
Q Consensus 494 ~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~ 573 (578)
.|= .- -.|++.++++++.+++||++.+.+.+.++++++++...++.+.+--. ..|-.....+.+.....|
T Consensus 243 ~iE---~P------~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~-~GGit~~~~ia~~A~~~g 312 (409)
T 3go2_A 243 WVE---ID------SYSPQGLAYVRNHSPHPISSCETLFGIREFKPFFDANAVDVAIVDTI-WNGVWQSMKIAAFADAHD 312 (409)
T ss_dssp EEE---CC------CSCHHHHHHHHHTCSSCEEECTTCCHHHHHHHHHHTTCCSEEEECHH-HHCHHHHHHHHHHHHHTT
T ss_pred EEE---eC------cCCHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEeCCC-CCCHHHHHHHHHHHHHcC
Confidence 543 11 13899999999999999999999999999999997445676554333 345444667777888888
Q ss_pred Cee
Q 045794 574 IEV 576 (578)
Q Consensus 574 i~v 576 (578)
++|
T Consensus 313 i~~ 315 (409)
T 3go2_A 313 INV 315 (409)
T ss_dssp CEE
T ss_pred CEE
Confidence 876
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=91.38 E-value=4.5 Score=40.12 Aligned_cols=197 Identities=17% Similarity=0.175 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHcCCCeEEEE--ecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFL--NITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~--Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
-..++|+.+.+.|++-+-+- .-.....+..+ ...-++.+++.+++.++|+.. =+-+.++ ++.+.
T Consensus 53 ~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~~~Gl~~~t--e~~d~~~-----------~~~l~ 119 (276)
T 1vs1_A 53 QVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGDEAGLPVVT--EVLDPRH-----------VETVS 119 (276)
T ss_dssp HHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCCEEE--ECCCGGG-----------HHHHH
T ss_pred HHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCCCHHHHHHHHHHHHHcCCcEEE--ecCCHHH-----------HHHHH
Confidence 34567888888999854321 11111000000 145678889999999999864 3444443 67777
Q ss_pred HcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
+. ++.+-||+...++ .++++++++ .|. -|++ ++ |
T Consensus 120 ~~-vd~~kIgs~~~~n------------~~ll~~~a~-~~k-PV~l----k~----------------------G----- 153 (276)
T 1vs1_A 120 RY-ADMLQIGARNMQN------------FPLLREVGR-SGK-PVLL----KR----------------------G----- 153 (276)
T ss_dssp HH-CSEEEECGGGTTC------------HHHHHHHHH-HTC-CEEE----EC----------------------C-----
T ss_pred Hh-CCeEEECcccccC------------HHHHHHHHc-cCC-eEEE----cC----------------------C-----
Confidence 77 8999999988774 477888874 442 2333 12 1
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEE-e-ccCC-CC-CCCCCCHHHHHHHHhhCCCcEEE-ec---CCCCH-H
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILL-N-CIDC-DG-QGKGFDMDLIKLISDAVSIPVIA-SS---GAGAV-E 535 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~-t-di~~-dG-~~~G~d~~li~~l~~~~~ipVIa-sG---Gi~s~-e 535 (578)
...+--++...++.+.+.|...+++ + ..+. .+ ...-.|+..+..+++.+++||+. +. |.++. .
T Consensus 154 --------~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~~lpVi~dssH~~g~~~~~~ 225 (276)
T 1vs1_A 154 --------FGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEATHLPVIVDPSHPAGRRSLVP 225 (276)
T ss_dssp --------TTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHBSSCEEECCHHHHCSGGGHH
T ss_pred --------CCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHhCCCEEEeCCCCCCccchHH
Confidence 0000112345566677788755554 4 3322 22 34446888899998888899864 43 43321 1
Q ss_pred HHHHHHHhcCchHHhhhhhh--------ccCCCCHHHHHHHHHh
Q 045794 536 HFSDVFRKTNASAALAAGIF--------HRKEVPIQSVKEHLYK 571 (578)
Q Consensus 536 Di~~l~~~~G~~gv~vgsa~--------~~~~~~~~~~~~~l~~ 571 (578)
.+..+.-..|++|++|=+=+ |...+.++++++.+++
T Consensus 226 ~~~~aAva~Ga~Gl~IE~H~~~d~a~~D~~~sl~p~~~~~lv~~ 269 (276)
T 1vs1_A 226 ALAKAGLAAGADGLIVEVHPNPEEALSDAKQQLTPGEFARLMGE 269 (276)
T ss_dssp HHHHHHHHTTCSEEEEEBCSSGGGCSSCGGGCBCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEecCCcccCCCchhcCCCHHHHHHHHHH
Confidence 22222223799998877643 2344567777776653
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.02 E-value=0.61 Score=48.22 Aligned_cols=140 Identities=11% Similarity=0.031 Sum_probs=93.2
Q ss_pred HHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCC
Q 045794 377 LEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLG 456 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~ 456 (578)
.+.++++.+.|.+.+=+--. .+. ..+.++.+.+.+ ++ +-+.+|+..
T Consensus 146 ~~~a~~~~~~G~~~iKik~~-~~~-----------d~~~v~avr~a~-~~-~~l~vDan~-------------------- 191 (369)
T 2zc8_A 146 LRVVERHLEEGYRRIKLKIK-PGW-----------DYEVLKAVREAF-PE-ATLTADANS-------------------- 191 (369)
T ss_dssp HHHHHHHHHTTCSCEEEECB-TTB-----------SHHHHHHHHHHC-TT-SCEEEECTT--------------------
T ss_pred HHHHHHHHHhhhheeeeecC-hhH-----------HHHHHHHHHHHc-CC-CeEEEecCC--------------------
Confidence 35677778888764433110 111 236788888888 43 557778632
Q ss_pred CCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHH
Q 045794 457 PNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEH 536 (578)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eD 536 (578)
+|.. -+ .++++.++++++..|= +. ....|++.++++++.+++||.+..-+.+.++
T Consensus 192 --------------~~~~---~~-~~~~~~l~~~~i~~iE------qP-~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~ 246 (369)
T 2zc8_A 192 --------------AYSL---AN-LAQLKRLDELRLDYIE------QP-LAYDDLLDHAKLQRELSTPICLDESLTGAEK 246 (369)
T ss_dssp --------------CCCG---GG-HHHHHGGGGGCCSCEE------CC-SCTTCSHHHHHHHHHCSSCEEESTTCCSHHH
T ss_pred --------------CCCH---HH-HHHHHHHHhCCCcEEE------CC-CCcccHHHHHHHHhhCCCCEEEcCccCCHHH
Confidence 2322 13 6788888888775432 21 2234889999999999999999999999999
Q ss_pred HHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCe
Q 045794 537 FSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIE 575 (578)
Q Consensus 537 i~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~ 575 (578)
++++++...++.+.+--.-..|-....++.+..++.|++
T Consensus 247 ~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~ 285 (369)
T 2zc8_A 247 ARKAIELGAGRVFNVKPARLGGHGESLRVHALAESAGIP 285 (369)
T ss_dssp HHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCEEEEchhhhCCHHHHHHHHHHHHHcCCc
Confidence 999997545776664333333433456777788888887
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.98 E-value=2.6 Score=41.92 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=88.8
Q ss_pred HHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCC
Q 045794 378 EVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGP 457 (578)
Q Consensus 378 ~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~ 457 (578)
+++....+.||+||=+.+..... |-+-++.+++++.+.. .--|.+.|-.+.+...
T Consensus 50 ~~a~~A~~gGAdRIELc~~l~~G-------GlTPS~g~i~~a~~~~-~ipV~vMIRPRgGdF~----------------- 104 (287)
T 3iwp_A 50 ESAVNAERGGADRIELCSGLSEG-------GTTPSMGVLQVVKQSV-QIPVFVMIRPRGGDFL----------------- 104 (287)
T ss_dssp HHHHHHHHHTCSEEEECBCGGGT-------CBCCCHHHHHHHHTTC-CSCEEEECCSSSSCSC-----------------
T ss_pred HHHHHHHHhCCCEEEECCCCCCC-------CCCCCHHHHHHHHHhc-CCCeEEEEecCCCCcc-----------------
Confidence 44899999999999998654431 2233567888876644 3346665655443110
Q ss_pred CCCCcceEEEEEcccccCCCC-CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCC---
Q 045794 458 NGEEYAWYQCTVNGGREGRPI-GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAG--- 532 (578)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~-~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~--- 532 (578)
+ . ...+ -..+-++.+.++|++.|++.-++.||+ +|.+.++++.+.. .+++...=-+.
T Consensus 105 ----------Y--s---~~E~~~M~~dI~~~~~~GAdGvVfG~L~~dg~---iD~~~~~~Li~~a~~l~vTFHRAFD~~~ 166 (287)
T 3iwp_A 105 ----------Y--S---DREIEVMKADIRLAKLYGADGLVFGALTEDGH---IDKELCMSLMAICRPLPVTFHRAFDMVH 166 (287)
T ss_dssp ----------C--C---HHHHHHHHHHHHHHHHTTCSEEEECCBCTTSC---BCHHHHHHHHHHHTTSCEEECGGGGGCS
T ss_pred ----------c--C---HHHHHHHHHHHHHHHHcCCCEEEEeeeCCCCC---cCHHHHHHHHHHcCCCcEEEECchhccC
Confidence 0 0 0011 134678889999999999999998875 5888888875543 56776554322
Q ss_pred CHHH-HHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 533 AVEH-FSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 533 s~eD-i~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
++.. +..+. ..|++-|+.+-....-...++.+++....
T Consensus 167 d~~~Ale~Li-~lGvdrILTSG~~~~a~~Gl~~Lk~Lv~~ 205 (287)
T 3iwp_A 167 DPMAALETLL-TLGFERVLTSGCDSSALEGLPLIKRLIEQ 205 (287)
T ss_dssp CHHHHHHHHH-HHTCSEEEECTTSSSTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHH-HcCCCEEECCCCCCChHHhHHHHHHHHHH
Confidence 2332 33333 35777665432222223445666665543
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=90.97 E-value=0.35 Score=47.05 Aligned_cols=64 Identities=23% Similarity=0.462 Sum_probs=42.4
Q ss_pred HHHHHHHcCCCeEEEEecc-cCCCCCCCCchhHHHHHHHhhh--ccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 312 LARQYYKEGADEISFLNIT-GFRDFPLGDLPMLQVLRLTSEN--VFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 312 ~a~~~~~~g~~~i~~~Dl~-~~~~~~~~~~~~~~~i~~i~~~--~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
.++.-.+.|+| +|.-+ |... .+.+++.++.+++. ..++|-+.||||+.+| +.+++++||
T Consensus 162 a~~ia~~aGAD---fVKTSTGf~~----ggAt~~dv~lmr~~vg~~v~VKasGGIrt~~d-----------a~~~i~aGA 223 (239)
T 3ngj_A 162 VCKRCVAAGAE---YVKTSTGFGT----HGATPEDVKLMKDTVGDKALVKAAGGIRTFDD-----------AMKMINNGA 223 (239)
T ss_dssp HHHHHHHHTCS---EEECCCSSSS----CCCCHHHHHHHHHHHGGGSEEEEESSCCSHHH-----------HHHHHHTTE
T ss_pred HHHHHHHHCcC---EEECCCCCCC----CCCCHHHHHHHHHhhCCCceEEEeCCCCCHHH-----------HHHHHHhcc
Confidence 34444678999 45555 4311 13334444444443 3688999999999876 999999999
Q ss_pred ceeec
Q 045794 389 DKISI 393 (578)
Q Consensus 389 ~~vv~ 393 (578)
+|+=.
T Consensus 224 ~riGt 228 (239)
T 3ngj_A 224 SRIGA 228 (239)
T ss_dssp EEEEE
T ss_pred cceec
Confidence 98643
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=90.95 E-value=0.18 Score=63.11 Aligned_cols=80 Identities=23% Similarity=0.171 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCCeEEEEecccCC-CCCCCC----chhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 310 VELARQYYKEGADEISFLNITGFR-DFPLGD----LPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~-~~~~~~----~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
+..|....+.|+|-++|+-.+|.+ +||.+. ...+.++.++++.+++||.++|||.+-++ +..+|
T Consensus 713 ~~~~~~~~~~g~d~~ii~~~~G~eaGGH~g~~d~~~~~l~l~~~v~~~~~ipviaaGGi~dg~~-----------~~aaL 781 (2051)
T 2uv8_G 713 ISQVINIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRHPNIMLIFGSGFGSADD-----------TYPYL 781 (2051)
T ss_dssp HHHHHHHHHHSTTSCEEEEECCSSCSEECCSCCSSHHHHHHHHHHTTCTTBCCEEESSCCSHHH-----------HTHHH
T ss_pred HHHHHHHHHhCCCceeEEEEEccCcCCCCCcccccccHHHHHHHHHhcCCceEEEeCCCCCHHH-----------HHHHH
Confidence 344566667788887777777754 444432 33556789999999999999999999876 88888
Q ss_pred -----------HcCcceeecchhhhcc
Q 045794 385 -----------RSGADKISIGSDAVYA 400 (578)
Q Consensus 385 -----------~~Ga~~vv~gt~~~~~ 400 (578)
.+||+-|-+||..+-.
T Consensus 782 ~g~w~~~~g~~~lgadGv~~GTrf~~t 808 (2051)
T 2uv8_G 782 TGEWSTKFDYPPMPFDGFLFGSRVMIA 808 (2051)
T ss_dssp HTCGGGTTTCCCCCCSCEECSGGGTTS
T ss_pred ccccccccCccCCCCceeeechHHHhC
Confidence 7999999999987753
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=90.30 E-value=0.51 Score=51.00 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCCeEEEEeccc--C-----CCCCCCCchhHHHHHHH---hhhccccEEEeCCccccccCCCCccChHHHH
Q 045794 311 ELARQYYKEGADEISFLNITG--F-----RDFPLGDLPMLQVLRLT---SENVFVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~--~-----~~~~~~~~~~~~~i~~i---~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
+.|+.+.+.|||-+- |-+.. + .-+ .+ -+.+..|.++ ++..++||+.+|||+..-| +
T Consensus 334 e~a~~Li~aGAD~vk-VGiGpGSiCtTr~v~G-vG-~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGD-----------i 399 (556)
T 4af0_A 334 EQAAQLIAAGADGLR-IGMGSGSICITQEVMA-VG-RPQGTAVYAVAEFASRFGIPCIADGGIGNIGH-----------I 399 (556)
T ss_dssp HHHHHHHHHTCSEEE-ECSSCSTTBCCTTTCC-SC-CCHHHHHHHHHHHHGGGTCCEEEESCCCSHHH-----------H
T ss_pred HHHHHHHHcCCCEEe-ecCCCCcccccccccC-CC-CcHHHHHHHHHHHHHHcCCCEEecCCcCcchH-----------H
Confidence 788899999999655 33321 1 001 11 2445555554 4557899999999999977 8
Q ss_pred HHHHHcCcceeecchhhhc
Q 045794 381 SEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~ 399 (578)
-+.|.+|||.|.+|+..-.
T Consensus 400 ~KAlaaGAd~VMlGsllAG 418 (556)
T 4af0_A 400 AKALALGASAVMMGGLLAG 418 (556)
T ss_dssp HHHHHTTCSEEEESTTTTT
T ss_pred HHHhhcCCCEEEEchhhcc
Confidence 8999999999999997664
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=90.20 E-value=2.8 Score=42.23 Aligned_cols=143 Identities=14% Similarity=0.246 Sum_probs=85.7
Q ss_pred HHHHHHHhhh-ccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 343 LQVLRLTSEN-VFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 343 ~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
..+++..+++ ..+||.+ ..+ |..+++.+++.+++|..-|.++.+.+.-.+ |.+..+++.+
T Consensus 62 ~~~v~~aa~~~~~VPVal-----HLD-----Hg~~~e~~~~ai~~GFtSVMiDgS~~p~ee---------Ni~~Tk~vv~ 122 (307)
T 3n9r_A 62 VGMVKIMCERYPHIPVAL-----HLD-----HGTTFESCEKAVKAGFTSVMIDASHHAFEE---------NLELTSKVVK 122 (307)
T ss_dssp HHHHHHHHHHSTTSCEEE-----EEE-----EECSHHHHHHHHHHTCSEEEECCTTSCHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEE-----ECC-----CCCCHHHHHHHHHhCCCcEEEECCCCCHHH---------HHHHHHHHHH
Confidence 3455555555 6788854 222 345677899999999999999655443111 3344444443
Q ss_pred ---hCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe
Q 045794 422 ---VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN 498 (578)
Q Consensus 422 ---~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t 498 (578)
.+| +++-.--|.+- |++- -+.... .+..-.++.+..+-+++.|++.+-+.
T Consensus 123 ~ah~~g-----vsVEaELG~ig------------------G~Ed---~~~~~~-~~~~yT~Peea~~Fv~~TgvD~LAva 175 (307)
T 3n9r_A 123 MAHNAG-----VSVEAELGRLM------------------GIED---NISVDE-KDAVLVNPKEAEQFVKESQVDYLAPA 175 (307)
T ss_dssp HHHHTT-----CEEEEEESCCC------------------CC--------------CCSCCHHHHHHHHHHHCCSEEEEC
T ss_pred HHHHcC-----CeEEEEeeeec------------------cccC---Cccccc-ccccCCCHHHHHHHHHHHCCCEEEEe
Confidence 355 33332222110 1100 000000 01122478888888999999988766
Q ss_pred ccCCCCCCC-----CCCHHHHHHHHhhCCCcEEEecCC
Q 045794 499 CIDCDGQGK-----GFDMDLIKLISDAVSIPVIASSGA 531 (578)
Q Consensus 499 di~~dG~~~-----G~d~~li~~l~~~~~ipVIasGGi 531 (578)
==+.-|.++ ..|++.++++.+..++|++.-||=
T Consensus 176 iGt~HG~Yk~~~~p~Ld~~~L~~I~~~~~~PLVlHGgS 213 (307)
T 3n9r_A 176 IGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGAS 213 (307)
T ss_dssp SSCCSSSBCCSSSCCCCHHHHHHHHHHHCSCEEESSCC
T ss_pred cCCcccccCCCCCCccCHHHHHHHHhcCCCCeEEeCCC
Confidence 545567664 249999999988779999999976
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=90.03 E-value=1.7 Score=43.53 Aligned_cols=151 Identities=15% Similarity=0.092 Sum_probs=91.4
Q ss_pred HHHHHHHHHHc----CCCeEEEEeccc---CCC-CCCC--CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHH
Q 045794 309 PVELARQYYKE----GADEISFLNITG---FRD-FPLG--DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLE 378 (578)
Q Consensus 309 p~~~a~~~~~~----g~~~i~~~Dl~~---~~~-~~~~--~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~ 378 (578)
..++|+.+.+. +...++-.-.+- +.- +..+ -..-++++++++++.++|+.- ++-| .+
T Consensus 57 ~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~GLpv~T-----ev~D--------~~ 123 (298)
T 3fs2_A 57 AFEMAGRLKEMTDKLGIGLVYKSSFDKANRTSLKAARGIGLEKALEVFSDLKKEYGFPVLT-----DIHT--------EE 123 (298)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECBCCCCC---------CCHHHHHHHHHHHHHHHCCCEEE-----ECCS--------HH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEcccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEE-----EeCC--------HH
Confidence 45678888765 455444443431 110 0111 124588899999999999953 3333 34
Q ss_pred HHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCC
Q 045794 379 VASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPN 458 (578)
Q Consensus 379 ~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (578)
.++.+.+. +|.+-||+...++ .+++++++ +.|. -|++ +++
T Consensus 124 ~v~~l~~~-vd~lkIgA~~~~n------------~~LLr~va-~~gk-PVil----K~G--------------------- 163 (298)
T 3fs2_A 124 QCAAVAPV-VDVLQIPAFLCRQ------------TDLLIAAA-RTGR-VVNV----KKG--------------------- 163 (298)
T ss_dssp HHHHHTTT-CSEEEECGGGTTC------------HHHHHHHH-HTTS-EEEE----ECC---------------------
T ss_pred HHHHHHhh-CCEEEECccccCC------------HHHHHHHH-ccCC-cEEE----eCC---------------------
Confidence 46666666 9999999977764 47888876 4542 2222 222
Q ss_pred CCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC--CCHHHHHHHHhhCCCcEEE
Q 045794 459 GEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG--FDMDLIKLISDAVSIPVIA 527 (578)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G--~d~~li~~l~~~~~ipVIa 527 (578)
...+--++...++.+.+.|...|+++.....=.+.- .|+..+..+++ +.+||++
T Consensus 164 --------------ms~t~~ei~~ave~i~~~Gn~~iiL~erg~~y~~~~~~vdl~~i~~lk~-~~~PV~~ 219 (298)
T 3fs2_A 164 --------------QFLAPWDMKNVLAKITESGNPNVLATERGVSFGYNTLVSDMRALPIMAG-LGAPVIF 219 (298)
T ss_dssp --------------TTCCGGGHHHHHHHHHTTTCCCEEEEECCEECSSSCEECCTTHHHHHHT-TTSCEEE
T ss_pred --------------CCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccCHHHHHHHHH-cCCcEEE
Confidence 111112456677778888988888765433212222 47888888888 8999998
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=90.01 E-value=1.5 Score=44.21 Aligned_cols=193 Identities=17% Similarity=0.191 Sum_probs=112.1
Q ss_pred HHHHHHHHcCCCeEEEEeccc-CCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 311 ELARQYYKEGADEISFLNITG-FRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~-~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
.+.+..++.++. .|+-++. ... ..+......+++..++ ..+||.+ ..+ |..++|.+++.+++|..
T Consensus 32 Ail~AAee~~sP--vIlq~s~g~~~-y~g~~~~~~~v~~~a~-~~VPVal-----HlD-----Hg~~~e~~~~ai~~GFt 97 (305)
T 1rvg_A 32 AVLEAAEEQRSP--VILALSEGAMK-YGGRALTLMAVELAKE-ARVPVAV-----HLD-----HGSSYESVLRALRAGFT 97 (305)
T ss_dssp HHHHHHHHTTCC--EEEEEEHHHHH-HHHHHHHHHHHHHHHH-CSSCEEE-----EEE-----EECSHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCC--EEEECChhHHh-hCCHHHHHHHHHHHHh-CCCcEEE-----ECC-----CCCCHHHHHHHHHcCCC
Confidence 445555566665 3444432 100 0011223456666666 8889864 222 44567889999999999
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHHH---hCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQISR---VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
-|.++.+.+.-.+ |.+..+++.+ .+| +++-.--|.+- |++- .
T Consensus 98 SVMiDgS~~p~eE---------Ni~~Tk~vv~~ah~~g-----vsVEaELG~vg------------------g~Ed---~ 142 (305)
T 1rvg_A 98 SVMIDKSHEDFET---------NVRETRRVVEAAHAVG-----VTVEAELGRLA------------------GIEE---H 142 (305)
T ss_dssp EEEECCTTSCHHH---------HHHHHHHHHHHHHHTT-----CEEEEEESCCC------------------CSCC----
T ss_pred eeeeCCCCCCHHH---------HHHHHHHHHHHHHHcC-----CEEEEEEeecc------------------CccC---C
Confidence 9999555443111 3344454443 355 33332222210 1000 0
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCC--C---CCHHHHHHHHhhCCCcEEEecCC----------
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK--G---FDMDLIKLISDAVSIPVIASSGA---------- 531 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~--G---~d~~li~~l~~~~~ipVIasGGi---------- 531 (578)
+... -.+..-.++.+..+-+++.|++.+-+.==+.-|.++ | .|++.++++.+.+++|++.-||=
T Consensus 143 ~~~~-~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~~vpLVlHGgSsv~~~~~~~~ 221 (305)
T 1rvg_A 143 VAVD-EKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLHGASAVPPELVERF 221 (305)
T ss_dssp ------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHH
T ss_pred cccc-ccccccCCHHHHHHHHHHHCCCEEEEecCccccccCCCCCCccCHHHHHHHHHhcCCCEEEeCCCCCcHHHHHHH
Confidence 0000 011112578999999999999988766556667766 4 48999999999999999999987
Q ss_pred -----------CC-HHHHHHHHHhcCchHHhhhhh
Q 045794 532 -----------GA-VEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 532 -----------~s-~eDi~~l~~~~G~~gv~vgsa 554 (578)
+. .++++++.+ .|+..+=|++-
T Consensus 222 ~~~gg~~~~~~G~p~e~i~~ai~-~GV~KiNi~Td 255 (305)
T 1rvg_A 222 RASGGEIGEAAGIHPEDIKKAIS-LGIAKINTDTD 255 (305)
T ss_dssp HHTTCCCCSCBCCCHHHHHHHHH-TTEEEEEECHH
T ss_pred HhhccccccCCCCCHHHHHHHHH-CCCeEEEEChH
Confidence 43 455666664 67666544443
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=89.99 E-value=0.7 Score=46.12 Aligned_cols=72 Identities=24% Similarity=0.391 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhh--ccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSEN--VFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~--~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
..++.-.+.|+|.|=- - .|... ......+.++++++.+. ..++|-+.||||+.+| +.+++++||
T Consensus 192 ~A~~ia~eaGADfVKT-S-TGf~~-~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~ed-----------Al~mi~aGA 257 (288)
T 3oa3_A 192 AGCVLSSLAGADYVKT-S-TGFNG-PGASIENVSLMSAVCDSLQSETRVKASGGIRTIED-----------CVKMVRAGA 257 (288)
T ss_dssp HHHHHHHHTTCSEEEC-C-CSSSS-CCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHH-----------HHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEc-C-CCCCC-CCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHH-----------HHHHHHcCC
Confidence 3455556789995431 1 23211 11224567777777652 4689999999999876 999999999
Q ss_pred ceeecchhhh
Q 045794 389 DKISIGSDAV 398 (578)
Q Consensus 389 ~~vv~gt~~~ 398 (578)
+|+ ||..-
T Consensus 258 ~Ri--GtS~g 265 (288)
T 3oa3_A 258 ERL--GASAG 265 (288)
T ss_dssp SEE--EESCH
T ss_pred cee--ehhhH
Confidence 985 55433
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=89.73 E-value=1.6 Score=45.01 Aligned_cols=142 Identities=14% Similarity=0.075 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCcc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++++.|.. |+=+|.....++ .+.++.+.+.+|. +.+.+|+..
T Consensus 148 ~~~a~~~~~~G~~~iK~Kvg~~~~~~d-----------~~~v~avr~~~~~--~~l~vDaN~------------------ 196 (365)
T 3ik4_A 148 AASAKAILARGIKSIKVKTAGVDVAYD-----------LARLRAIHQAAPT--APLIVDGNC------------------ 196 (365)
T ss_dssp HHHHHHHHHTTCCCEEEECCSSCHHHH-----------HHHHHHHHHHSSS--CCEEEECTT------------------
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCHHHH-----------HHHHHHHHHhCCC--CeEEEECCC------------------
Confidence 4557778888865 444565423221 3678888888963 466788543
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHH--HHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCC
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAV--EDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAG 532 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~--~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~ 532 (578)
+|... +...+++++ +++++ ..+-. =..--|++.++++++.+++||.+.--+.
T Consensus 197 ----------------~~~~~---~A~~~~~~L~~~~~~i--~~iEe-----P~~~~d~~~~~~l~~~~~ipIa~dE~~~ 250 (365)
T 3ik4_A 197 ----------------GYDVE---RALAFCAACKAESIPM--VLFEQ-----PLPREDWAGMAQVTAQSGFAVAADESAR 250 (365)
T ss_dssp ----------------CCCHH---HHHHHHHHHHHTTCCE--EEEEC-----CSCTTCHHHHHHHHHHSSSCEEESTTCS
T ss_pred ----------------CCCHH---HHHHHHHHHhhCCCCc--eEEEC-----CCCcccHHHHHHHHhhCCCCEEECCCCC
Confidence 23221 345677777 44433 22222 1122389999999999999999999999
Q ss_pred CHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 533 AVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 533 s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+..|++++++...++.+.+--.. .|-....++.+.+...|+++
T Consensus 251 ~~~~~~~~i~~~a~d~v~ik~~~-GGit~~~~i~~~A~~~gi~~ 293 (365)
T 3ik4_A 251 SAHDVLRIAREGTASVINIKLMK-AGVAEGLKMIAIAQAAGLGL 293 (365)
T ss_dssp SHHHHHHHHHHTCCSEEEECHHH-HCHHHHHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHHhCCCCEEEEcCCc-cCHHHHHHHHHHHHHcCCeE
Confidence 99999999875556665543333 44444566677777778775
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=89.66 E-value=1.9 Score=43.69 Aligned_cols=190 Identities=15% Similarity=0.164 Sum_probs=112.2
Q ss_pred HHHHHHHHcCCCeEEEEeccc-CCCCCCCCchhHHHHHHHhhh-ccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 311 ELARQYYKEGADEISFLNITG-FRDFPLGDLPMLQVLRLTSEN-VFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~-~~~~~~~~~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
.+.+..++.+..- |+-++. .. ...+......+++..+++ ..+||.+ ..+ |..+++.+++.+++|.
T Consensus 33 Ail~AAee~~sPv--Ilq~s~g~~-~y~g~~~~~~~v~~aa~~~~~VPVal-----HlD-----Hg~~~e~i~~ai~~GF 99 (323)
T 2isw_A 33 GIMKAVVQLKSPV--ILQCSRGAL-KYSDMIYLKKLCEAALEKHPDIPICI-----HLD-----HGDTLESVKMAIDLGF 99 (323)
T ss_dssp HHHHHHHHTTCCE--EEEEEHHHH-HHTTTHHHHHHHHHHHHHCTTSCEEE-----EEE-----EECSHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCE--EEECChhHH-HhCCHHHHHHHHHHHHHhcCCCcEEE-----ECC-----CCCCHHHHHHHHHcCC
Confidence 4555555666653 444431 10 011223344667777776 6788854 222 4566788999999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHHHH---hCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR---VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
.-|.++.+.+.-.+ |.+..+++.+ .+| +++-.--|.+ | |++-
T Consensus 100 tSVMiDgS~~p~eE---------Ni~~Tk~vv~~ah~~g-----vsVEaELG~v----------------g--g~Ed--- 144 (323)
T 2isw_A 100 SSVMIDASHHPFDE---------NVRITKEVVAYAHARS-----VSVEAELGTL----------------G--GIEE--- 144 (323)
T ss_dssp SEEEECCTTSCHHH---------HHHHHHHHHHHHHTTT-----CEEEEEESCC--------------------------
T ss_pred CeEEecCCCCCHHH---------HHHHHHHHHHHHHHcC-----CeEEEEeCCc----------------c--CCcc---
Confidence 99999555443111 3444555443 355 3333222211 0 1000
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCC--C-----CCHHHHHHHHhhCCCcEEEecCC-------
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK--G-----FDMDLIKLISDAVSIPVIASSGA------- 531 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~--G-----~d~~li~~l~~~~~ipVIasGGi------- 531 (578)
.+ . .+..-.++.+..+-+++.|++.+-+.==+.-|.++ | .|++.++++.+.+++|++.-||=
T Consensus 145 ~v--~--~~~~yTdPeea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~L~~~~L~~I~~~~~vpLVlHGgSsvp~~~~ 220 (323)
T 2isw_A 145 DV--Q--NTVQLTEPQDAKKFVELTGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLTGIPLVMHGSSSVPKDVK 220 (323)
T ss_dssp ---------CCCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCCCC----CCCCHHHHHHHHHHCSCEEECSCCCCCHHHH
T ss_pred Cc--c--cccccCCHHHHHHHHHHHCCCEEEEecCccccccCCCCCcccccCHHHHHHHHHHhCCCeEEECCCCCCHHHH
Confidence 01 0 11122578999999999999988766556667665 3 56899999999999999999954
Q ss_pred --------------C-CHHHHHHHHHhcCchHHhhhh
Q 045794 532 --------------G-AVEHFSDVFRKTNASAALAAG 553 (578)
Q Consensus 532 --------------~-s~eDi~~l~~~~G~~gv~vgs 553 (578)
+ ..++++++.+ .|+..+=|++
T Consensus 221 ~~~~~~gg~~~~~~Gvp~e~i~~ai~-~GV~KiNi~T 256 (323)
T 2isw_A 221 DMINKYGGKMPDAVGVPIESIVHAIG-EGVCKINVDS 256 (323)
T ss_dssp HHHHHTTCCCTTCBCCCHHHHHHHHH-TTEEEEEECH
T ss_pred HHHHHhccccccCCCCCHHHHHHHHH-CCCeEEEECh
Confidence 2 3466777764 6766654444
|
| >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* | Back alignment and structure |
|---|
Probab=89.66 E-value=2.5 Score=42.05 Aligned_cols=180 Identities=13% Similarity=0.082 Sum_probs=102.3
Q ss_pred HHHHHHHHHHcC----CCeEEEEecccC-CCC---CCC--CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHH
Q 045794 309 PVELARQYYKEG----ADEISFLNITGF-RDF---PLG--DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLE 378 (578)
Q Consensus 309 p~~~a~~~~~~g----~~~i~~~Dl~~~-~~~---~~~--~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~ 378 (578)
..++|+.+.+.| ...++-.+.+-+ +.. ..+ -..-++.+++++++.++|+.. =+-+.++
T Consensus 31 a~~~a~~lk~~ga~~~~~~v~k~~f~k~prts~~~~~g~~l~~gl~~l~~~~~~~Gl~~~t--e~~d~~~---------- 98 (280)
T 2qkf_A 31 TLQTCAHYVEVTRKLGIPYIFKASFDKANRSSIHSYRGVGLEEGLKIFEKVKAEFGIPVIT--DVHEPHQ---------- 98 (280)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEESCCSSCSSSSSCCCSCHHHHHHHHHHHHHHHCCCEEE--ECCSGGG----------
T ss_pred HHHHHHHHHHhhhhcceeEEEeeeeecCCCCChHHhhccchHHHHHHHHHHHHHcCCcEEE--ecCCHHH----------
Confidence 456677777654 333444444421 110 001 134577888888889999853 3344433
Q ss_pred HHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCC
Q 045794 379 VASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPN 458 (578)
Q Consensus 379 ~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (578)
++.+.+. +|.+-||+.-.++ .+++++++ +.| +.|. ++++
T Consensus 99 -~~~l~~~-~d~~kIga~~~~n------------~~ll~~~a-~~~--kPV~---lk~G--------------------- 137 (280)
T 2qkf_A 99 -CQPVAEV-CDVIQLPAFLARQ------------TDLVVAMA-KTG--NVVN---IKKP--------------------- 137 (280)
T ss_dssp -HHHHHHH-CSEEEECGGGTTB------------HHHHHHHH-HTC--CEEE---EECC---------------------
T ss_pred -HHHHHhh-CCEEEECcccccC------------HHHHHHHH-cCC--CcEE---EECC---------------------
Confidence 6667677 8999999977774 47888986 454 2222 1222
Q ss_pred CCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC--CCHHHHHHHHhhC-CCcEEEe-------
Q 045794 459 GEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG--FDMDLIKLISDAV-SIPVIAS------- 528 (578)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G--~d~~li~~l~~~~-~ipVIas------- 528 (578)
...+--.+...+..+...|...+++.-....-.+.- .|+..+..+++.. +.||++.
T Consensus 138 --------------~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~~~~~~~~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~ 203 (280)
T 2qkf_A 138 --------------QFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVIFDVTHSLQT 203 (280)
T ss_dssp --------------TTSCGGGHHHHHHHHHHTTCCCEEEEECCEECSTTCEECCTTHHHHHHHHTTTCCEEEEHHHHCC-
T ss_pred --------------CCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCccccCHHHHHHHHHhCCCCCEEEECCCCccc
Confidence 110111456677778888986666665433212222 4778888888887 8999993
Q ss_pred ----cCCCCH-----HHHHHHHHhcCchHHhhhhhh
Q 045794 529 ----SGAGAV-----EHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 529 ----GGi~s~-----eDi~~l~~~~G~~gv~vgsa~ 555 (578)
||-..- ..+....-..|++|++|=+=+
T Consensus 204 ~~~~~~~s~g~~~~~~~~a~aava~Ga~G~~IE~H~ 239 (280)
T 2qkf_A 204 RDAGSAASGGRRAQALDLALAGMATRLAGLFLESHP 239 (280)
T ss_dssp ---------CHHHHHHHHHHHHHTTCCSEEEEEC--
T ss_pred cCccccccCCchhhHHHHHHHHHHcCCCEEEEeecC
Confidence 222111 233333334788888876643
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.36 E-value=2.7 Score=42.50 Aligned_cols=70 Identities=27% Similarity=0.290 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCc-------------hhHHHHHHHhhhccccEEEeCCccccccCCCCcc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDL-------------PMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHY 374 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~-------------~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~ 374 (578)
..++.|+.+.+.||+ |+|+.+....+ +.. -...+|+.+.+.+++||.++ |
T Consensus 50 ~al~~A~~~v~~GAd---IIDIGgeSTrP-ga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpISID-------------T 112 (314)
T 3tr9_A 50 SALRTAEKMVDEGAD---ILDIGGEATNP-FVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLISVD-------------T 112 (314)
T ss_dssp HHHHHHHHHHHTTCS---EEEEECCCSCT-TC-----CHHHHHHHHHHHHHHHHHHHHCCSEEEEE-------------C
T ss_pred HHHHHHHHHHHCCCC---EEEECCCCCCC-CcccccCCCCHHHHHHHHHHHHHHHHhhCCCeEEEe-------------C
Confidence 455678888889999 78998742221 111 03466777877778999763 3
Q ss_pred ChHHHHHHHHHcCcceeecchh
Q 045794 375 SSLEVASEYFRSGADKISIGSD 396 (578)
Q Consensus 375 ~~~~~~~~~l~~Ga~~vv~gt~ 396 (578)
...+.+++.+++||+ +|++.
T Consensus 113 ~~~~Va~aAl~aGa~--iINDV 132 (314)
T 3tr9_A 113 SRPRVMREAVNTGAD--MINDQ 132 (314)
T ss_dssp SCHHHHHHHHHHTCC--EEEET
T ss_pred CCHHHHHHHHHcCCC--EEEEC
Confidence 445789999999997 44443
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=89.30 E-value=0.6 Score=56.18 Aligned_cols=78 Identities=23% Similarity=0.183 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCC---------CchhHHHHHHHhhhc-------cccEEEeCCccccccCCC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLG---------DLPMLQVLRLTSENV-------FVPLTVGGGIRDFTDANG 371 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~---------~~~~~~~i~~i~~~~-------~~pi~~gGGir~~~d~~~ 371 (578)
...+.|+...+.|+|.|.+ ++..+++.. ..+....+.++.+.+ .+||++.|||++-.|
T Consensus 1005 gi~~~A~~a~~AGAD~IvV---sG~eGGTgasp~~~~~~~G~Pt~~aL~ev~~al~~~glr~~VpVIAdGGIrtG~D--- 1078 (1479)
T 1ea0_A 1005 GIGTIAAGVAKANADIILI---SGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRD--- 1078 (1479)
T ss_dssp THHHHHHHHHHTTCSEEEE---ECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHH---
T ss_pred ChHHHHHHHHHcCCcEEEE---cCCCCCCCCCchhhhcCCchhHHHHHHHHHHHHHHcCCCCCceEEEECCCCCHHH---
Confidence 4567888899999997764 444333210 013445666666543 699999999999977
Q ss_pred CccChHHHHHHHHHcCcceeecchhhhc
Q 045794 372 RHYSSLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 372 ~~~~~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
+-+.+.+||+-|-+||..+.
T Consensus 1079 --------VakALaLGAdaV~iGTafL~ 1098 (1479)
T 1ea0_A 1079 --------IVIAAMLGAEEFGIGTASLI 1098 (1479)
T ss_dssp --------HHHHHHTTCSEEECCHHHHH
T ss_pred --------HHHHHHcCCCeeeEcHHHHH
Confidence 88999999999999998865
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=89.19 E-value=9.5 Score=37.83 Aligned_cols=218 Identities=14% Similarity=0.053 Sum_probs=119.7
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..+-+++++.+.+.|++.|-+.=....+- ...-....++++.+.+..++|+.+=. .+ .+.++++++
T Consensus 25 ~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~-~p~~~~~~e~~~~i~~~~~~~v~~l~--~n-----------~~~i~~a~~ 90 (295)
T 1ydn_A 25 TADKIALINRLSDCGYARIEATSFVSPKW-VPQLADSREVMAGIRRADGVRYSVLV--PN-----------MKGYEAAAA 90 (295)
T ss_dssp HHHHHHHHHHHTTTTCSEEEEEECSCTTT-CGGGTTHHHHHHHSCCCSSSEEEEEC--SS-----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcCEEEEccCcCccc-cccccCHHHHHHHHHhCCCCEEEEEe--CC-----------HHHHHHHHH
Confidence 35667789999999999888753322110 00001456788888765466664322 23 356999999
Q ss_pred cCcceeecchhh---hccchhhhhccccCCchHHH---HHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCC
Q 045794 386 SGADKISIGSDA---VYAAEDYLKTGVKTGKSSLE---QISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNG 459 (578)
Q Consensus 386 ~Ga~~vv~gt~~---~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (578)
+|++.|.+...+ .... .+ +.+...+.+.+. +.++.+|- .+.+.|-.--+. ++
T Consensus 91 ~G~~~V~i~~~~S~~h~~~-~~-~~~~~e~~~~~~~~v~~a~~~G~-~V~~~l~~~~~~------------------e~- 148 (295)
T 1ydn_A 91 AHADEIAVFISASEGFSKA-NI-NCTIAESIERLSPVIGAAINDGL-AIRGYVSCVVEC------------------PY- 148 (295)
T ss_dssp TTCSEEEEEEESCHHHHHH-HT-SSCHHHHHHHHHHHHHHHHHTTC-EEEEEEECSSEE------------------TT-
T ss_pred CCCCEEEEEEecCHHHHHH-Hc-CCCHHHHHHHHHHHHHHHHHcCC-eEEEEEEEEecC------------------Cc-
Confidence 999988774211 1100 00 000000112222 22345663 343323211000 00
Q ss_pred CCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCC-CcEEEec----CCCC
Q 045794 460 EEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVS-IPVIASS----GAGA 533 (578)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~-ipVIasG----Gi~s 533 (578)
+.+ ...-.+.++++.+.+.|++.|-+-| ..|.+... ..++++.+++.++ +|+-.-+ |...
T Consensus 149 -----------~~~-~~~~~~~~~~~~~~~~G~d~i~l~D--t~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~ 214 (295)
T 1ydn_A 149 -----------DGP-VTPQAVASVTEQLFSLGCHEVSLGD--TIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRAL 214 (295)
T ss_dssp -----------TEE-CCHHHHHHHHHHHHHHTCSEEEEEE--TTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHH
T ss_pred -----------CCC-CCHHHHHHHHHHHHhcCCCEEEecC--CCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHH
Confidence 000 0111356777778899999999886 34554432 4588899988886 8887765 4443
Q ss_pred HHHHHHHHHhcCchHHhhhhhh----------ccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIF----------HRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~----------~~~~~~~~~~~~~l~~~~i~v 576 (578)
.. ..++.+ .|++.+= ++.. -.|....+++...|++.|+..
T Consensus 215 an-~l~Ai~-aG~~~vd-~sv~GlG~cp~a~g~~GN~~~e~lv~~l~~~g~~~ 264 (295)
T 1ydn_A 215 DN-IRVSLE-KGLRVFD-ASVGGLGGCPFAPGAKGNVDTVAVVEMLHEMGFET 264 (295)
T ss_dssp HH-HHHHHH-HTCCEEE-EBTTCCSCBTTBTTSCCBCBHHHHHHHHHHTTCBC
T ss_pred HH-HHHHHH-hCCCEEE-eccccCCCCCCCCCCcCChhHHHHHHHHHhcCCCC
Confidence 33 344443 6876542 1211 135667899999998887764
|
| >3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* | Back alignment and structure |
|---|
Probab=89.18 E-value=6.9 Score=37.80 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV---SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~---~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
+..+..+.+.+...=.++++|+.--| +.| +++++++++.. .+|||+-.+-.+.+...++++ .|+++.+
T Consensus 156 ~~~eal~~l~~~~~~dlvllD~~mP~-~dG--~~l~~~lr~~~~~~~~~ii~~s~~~~~~~~~~a~~-~Ga~~yl----- 226 (259)
T 3luf_A 156 HAREALATLEQHPAIRLVLVDYYMPE-IDG--ISLVRMLRERYSKQQLAIIGISVSDKRGLSARYLK-QGANDFL----- 226 (259)
T ss_dssp SHHHHHHHHHHCTTEEEEEECSCCSS-SCH--HHHHHHHHHHCCTTTSEEEEEECSSSSSHHHHHHH-TTCSEEE-----
T ss_pred CHHHHHHHHhcCCCCCEEEEcCCCCC-CCH--HHHHHHHHhccCCCCCeEEEEEccCCHHHHHHHHh-cChhheE-----
Confidence 34566666666532257888886432 222 67888887643 589998777778888888885 8888664
Q ss_pred ccCCCCHHHHHHHHH
Q 045794 556 HRKEVPIQSVKEHLY 570 (578)
Q Consensus 556 ~~~~~~~~~~~~~l~ 570 (578)
.++++..++...++
T Consensus 227 -~KP~~~~~L~~~i~ 240 (259)
T 3luf_A 227 -NQPFEPEELQCRVS 240 (259)
T ss_dssp -ESSCCHHHHHHHHH
T ss_pred -cCCCCHHHHHHHHH
Confidence 67788877776554
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=89.17 E-value=1.1 Score=44.04 Aligned_cols=79 Identities=15% Similarity=0.166 Sum_probs=55.4
Q ss_pred EecCCHHHHHHHHHHc-CCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHH
Q 045794 304 RNLGKPVELARQYYKE-GADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 304 ~~~~~p~~~a~~~~~~-g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
.+..+..|+.+ ..+. |++-|-+ +.-...+. ..+++...++.+.+ ++++...|||++.+| +
T Consensus 155 vEv~~~eE~~~-A~~l~g~~iIGi-nnr~l~t~----~~d~~~~~~l~~~ip~~~~vIaEsGI~t~ed-----------v 217 (251)
T 1i4n_A 155 VEVHSREDLEK-VFSVIRPKIIGI-NTRDLDTF----EIKKNVLWELLPLVPDDTVVVAESGIKDPRE-----------L 217 (251)
T ss_dssp EEECSHHHHHH-HHTTCCCSEEEE-ECBCTTTC----CBCTTHHHHHGGGSCTTSEEEEESCCCCGGG-----------H
T ss_pred EEeCCHHHHHH-HHhcCCCCEEEE-eCcccccC----CCCHHHHHHHHHhCCCCCEEEEeCCCCCHHH-----------H
Confidence 34457767544 4567 9985544 33222111 33466677777665 567888999999988 9
Q ss_pred HHHHHcCcceeecchhhhcc
Q 045794 381 SEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+++.++ ++.|++|++..+.
T Consensus 218 ~~~~~~-a~avLVG~aimr~ 236 (251)
T 1i4n_A 218 KDLRGK-VNAVLVGTSIMKA 236 (251)
T ss_dssp HHHTTT-CSEEEECHHHHHC
T ss_pred HHHHHh-CCEEEEcHHHcCC
Confidence 999999 9999999998873
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=88.93 E-value=0.37 Score=46.34 Aligned_cols=77 Identities=12% Similarity=0.060 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCCeEEEEecc--cCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 309 PVELARQYYKEGADEISFLNIT--GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~--~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
|.+.++.+.+.|++++.+ .+. +-.++.......++.|++... .+.+|++.||||-. + ++.+.++
T Consensus 123 ~~~~~~~~~~~~~~~~v~-~~a~~~~~~Gvv~s~~e~~~ir~~~~-~~~~i~v~gGI~~~-~-----------~~~~~~a 188 (221)
T 3exr_A 123 TYDQAQQWLDAGISQAIY-HQSRDALLAGETWGEKDLNKVKKLIE-MGFRVSVTGGLSVD-T-----------LKLFEGV 188 (221)
T ss_dssp CHHHHHHHHHTTCCEEEE-ECCHHHHHHTCCCCHHHHHHHHHHHH-HTCEEEEESSCCGG-G-----------GGGGTTC
T ss_pred CHHHHHHHHcCCHHHHHH-HHHHhcCCCccccCHHHHHHHHHhhc-CCceEEEECCCCHH-H-----------HHHHHHC
Confidence 456677777778887655 332 111222222223445555442 25778999999763 3 7788999
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
|||.+|+|+..+.
T Consensus 189 Gad~~VvG~~I~~ 201 (221)
T 3exr_A 189 DVFTFIAGRGITE 201 (221)
T ss_dssp CCSEEEECHHHHT
T ss_pred CCCEEEECchhhC
Confidence 9999999998775
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=88.93 E-value=1.1 Score=43.41 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
...++++.+.+-|++.|=++-.+.+ -.+.++++++.++-.++..|.|-+.++++.+.+ .|++.++. .
T Consensus 47 ~a~~~a~al~~gGi~~iEvt~~t~~------a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~-AGA~fIvs------P 113 (232)
T 4e38_A 47 DIIPLGKVLAENGLPAAEITFRSDA------AVEAIRLLRQAQPEMLIGAGTILNGEQALAAKE-AGATFVVS------P 113 (232)
T ss_dssp GHHHHHHHHHHTTCCEEEEETTSTT------HHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHH-HTCSEEEC------S
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCC------HHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHH-cCCCEEEe------C
Confidence 5789999999999998888765433 358999999887667899999999999999996 89998862 2
Q ss_pred CCCHHHHHHHHHhCCCee
Q 045794 559 EVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 559 ~~~~~~~~~~l~~~~i~v 576 (578)
.. -.++.+++++.|+++
T Consensus 114 ~~-~~~vi~~~~~~gi~~ 130 (232)
T 4e38_A 114 GF-NPNTVRACQEIGIDI 130 (232)
T ss_dssp SC-CHHHHHHHHHHTCEE
T ss_pred CC-CHHHHHHHHHcCCCE
Confidence 23 345677788778875
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.82 E-value=6 Score=39.59 Aligned_cols=218 Identities=14% Similarity=0.107 Sum_probs=118.6
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..+-+++++.+.+.|++.|-+.=....+.-+ .-....++++.+.+..++++++= +.+ .+.+++.++
T Consensus 29 ~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~l--~~~-----------~~~i~~a~~ 94 (302)
T 2ftp_A 29 VADKIRLVDDLSAAGLDYIEVGSFVSPKWVP-QMAGSAEVFAGIRQRPGVTYAAL--APN-----------LKGFEAALE 94 (302)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECSCTTTCG-GGTTHHHHHHHSCCCTTSEEEEE--CCS-----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcCEEEECCCcCccccc-cccCHHHHHHHhhhcCCCEEEEE--eCC-----------HHHHHHHHh
Confidence 3567788999999999988875322111000 00122355666665445565431 133 456999999
Q ss_pred cCcceeec-chh-hhccchhhhhccccCCchHHHHH---HHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCC
Q 045794 386 SGADKISI-GSD-AVYAAEDYLKTGVKTGKSSLEQI---SRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGE 460 (578)
Q Consensus 386 ~Ga~~vv~-gt~-~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (578)
+|++.|-+ .+. -.-. ..-++.....|.+.++++ ++.+|. .+.+.|-.--+. ++
T Consensus 95 aG~~~v~i~~~~s~~~~-~~~~~~s~ee~l~~~~~~v~~a~~~G~-~V~~~l~~~~~~------------------e~-- 152 (302)
T 2ftp_A 95 SGVKEVAVFAAASEAFS-QRNINCSIKDSLERFVPVLEAARQHQV-RVRGYISCVLGC------------------PY-- 152 (302)
T ss_dssp TTCCEEEEEEESCHHHH-HHHHSSCHHHHHHHHHHHHHHHHHTTC-EEEEEEECTTCB------------------TT--
T ss_pred CCcCEEEEEEecCHHHH-HHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEEEEeeC------------------Cc--
Confidence 99998876 222 1100 000000000011223332 344663 344433221100 00
Q ss_pred CcceEEEEEcccccCCC-CCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC-CCcEEEec----CCCC
Q 045794 461 EYAWYQCTVNGGREGRP-IGAYELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV-SIPVIASS----GAGA 533 (578)
Q Consensus 461 ~~~~~~~~~~g~~~~~~-~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~-~ipVIasG----Gi~s 533 (578)
.. .++ -.+.++++.+.+.|++.|.+-|. .|.+... ..++++.+++.+ ++|+-.-| |...
T Consensus 153 ----------~~--~~~~~~~~~~~~~~~~~G~d~i~l~DT--~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~ 218 (302)
T 2ftp_A 153 ----------DG--DVDPRQVAWVARELQQMGCYEVSLGDT--IGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQAL 218 (302)
T ss_dssp ----------TB--CCCHHHHHHHHHHHHHTTCSEEEEEES--SSCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHH
T ss_pred ----------CC--CCCHHHHHHHHHHHHHcCCCEEEEeCC--CCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHH
Confidence 00 111 13567777778999999888854 4554432 468899998888 58997766 4443
Q ss_pred HHHHHHHHHhcCchHHhhhhhh----------ccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIF----------HRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~----------~~~~~~~~~~~~~l~~~~i~v 576 (578)
.. ..++.+ .|++.|= ++.. -.|...++++...|++.|+..
T Consensus 219 An-~laAv~-aGa~~vd-~tv~GlG~cp~a~gr~GN~~~E~lv~~l~~~g~~~ 268 (302)
T 2ftp_A 219 AN-IYASLL-EGIAVFD-SSVAGLGGCPYAKGATGNVASEDVLYLLNGLEIHT 268 (302)
T ss_dssp HH-HHHHHH-TTCCEEE-EBGGGCCBCGGGTTCBCBCBHHHHHHHHHHTTCBC
T ss_pred HH-HHHHHH-hCCCEEE-ecccccCCCCCCCCCCCChhHHHHHHHHHhcCCCC
Confidence 33 444444 7876542 2222 135677889999998887764
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=88.73 E-value=0.35 Score=62.82 Aligned_cols=79 Identities=23% Similarity=0.248 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCC---eEEEEecccCC-CCCCCCchhHHHH----HHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 311 ELARQYYKEGAD---EISFLNITGFR-DFPLGDLPMLQVL----RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 311 ~~a~~~~~~g~~---~i~~~Dl~~~~-~~~~~~~~~~~~i----~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+.|++..+.|++ .++++=..+.. +++.+......++ .++++.+++||.+||||.+-++ +..
T Consensus 555 ~~a~~~~~i~~d~~~~~y~vv~~G~eaGGH~g~~~~~~ll~~~~~~ir~~~~iPViaaGGI~d~~~-----------vaa 623 (3089)
T 3zen_D 555 EQIRSVIRIAAEVPTKPVIVHIEGGRAGGHHSWEDLDDLLLATYSELRSRSNITICVGGGIGTPER-----------SAE 623 (3089)
T ss_dssp HHHHHHHHHHTTSTTSCEEEEECCSSSSEECCSCCHHHHHHHHHHHHTTCTTEEEEEESSCCCTTT-----------THH
T ss_pred HHHHHHHHhhhhcCCCcEEEEEeCCCcCCCCCcccHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHH-----------HHH
Confidence 344444555544 22233333332 3444444556666 7888778999999999999988 888
Q ss_pred HH-----------HcCcceeecchhhhcc
Q 045794 383 YF-----------RSGADKISIGSDAVYA 400 (578)
Q Consensus 383 ~l-----------~~Ga~~vv~gt~~~~~ 400 (578)
++ .+|||-|++||..+.-
T Consensus 624 al~g~ws~~~~~p~lGAdGV~vGTrfl~t 652 (3089)
T 3zen_D 624 YLSGRWAEVHGYPLMPIDGILVGTAAMAT 652 (3089)
T ss_dssp HHHTGGGGTTTCCCCCCSEEECSSTTTTC
T ss_pred HhccccccccCccCCCCCEEEecHHHHhC
Confidence 99 9999999999988864
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=88.70 E-value=0.87 Score=44.17 Aligned_cols=71 Identities=17% Similarity=0.120 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCC--CCCCHHHHHH--HHhhCCCcEEEecCCCCHHHHHHHHHhcCch--HHhhhh
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQG--KGFDMDLIKL--ISDAVSIPVIASSGAGAVEHFSDVFRKTNAS--AALAAG 553 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~--~G~d~~li~~--l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~--gv~vgs 553 (578)
....++...+.|++.|= |+. |.. .|...+-++. +++.+.+||-++||+++.+|+.++.+ .|++ |+..|.
T Consensus 150 i~~a~ria~eaGADfVK-TsT---G~~~~~gAt~~dv~l~~m~~~v~v~VKaaGGirt~~~al~~i~-aGa~RiG~S~g~ 224 (234)
T 1n7k_A 150 LSLLVDSSRRAGADIVK-TST---GVYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVG-AGADIIGTSSAV 224 (234)
T ss_dssp HHHHHHHHHHTTCSEEE-SCC---SSSCCCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHH-TTCSEEEETTHH
T ss_pred HHHHHHHHHHhCCCEEE-eCC---CCCCCCCCCHHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHH-cCccccchHHHH
Confidence 55678888999998654 442 222 3555555555 66655599999999999999999995 9999 776555
Q ss_pred hh
Q 045794 554 IF 555 (578)
Q Consensus 554 a~ 555 (578)
.+
T Consensus 225 ~I 226 (234)
T 1n7k_A 225 KV 226 (234)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=88.46 E-value=0.75 Score=55.54 Aligned_cols=78 Identities=22% Similarity=0.124 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCC---------chhHHHHHHHhhhc-------cccEEEeCCccccccCCC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGD---------LPMLQVLRLTSENV-------FVPLTVGGGIRDFTDANG 371 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~---------~~~~~~i~~i~~~~-------~~pi~~gGGir~~~d~~~ 371 (578)
...+.|+...+.|+|.|.+ ++..+++... .+....+.++.+.+ .+||++.|||++-.|
T Consensus 1040 gi~~~A~~a~kAGAD~IvV---sG~eGGTgasp~~~~~~~GlPt~~aL~ev~~al~~~glr~~IpVIAdGGIrtG~D--- 1113 (1520)
T 1ofd_A 1040 GIGTIAAGVAKANADIIQI---SGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWD--- 1113 (1520)
T ss_dssp THHHHHHHHHHTTCSEEEE---ECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHH---
T ss_pred ChHHHHHHHHHcCCCEEEE---eCCCCccCCCcchhhcCCchhHHHHHHHHHHHHHhcCCCCCceEEEECCCCCHHH---
Confidence 4556788888899997653 4443332110 12345566665533 699999999999977
Q ss_pred CccChHHHHHHHHHcCcceeecchhhhc
Q 045794 372 RHYSSLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 372 ~~~~~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
+-+.+.+||+-|-+||..+.
T Consensus 1114 --------VakALaLGAdaV~iGTafL~ 1133 (1520)
T 1ofd_A 1114 --------VVMAALMGAEEYGFGSIAMI 1133 (1520)
T ss_dssp --------HHHHHHTTCSEEECSHHHHH
T ss_pred --------HHHHHHcCCCeeEEcHHHHH
Confidence 88999999999999998765
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=88.41 E-value=0.87 Score=45.95 Aligned_cols=91 Identities=20% Similarity=0.287 Sum_probs=66.4
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCCC--HHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHH---hcCchHHhhh
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFD--MDLIKLISDAV--SIPVIASSGAGAVEHFSDVFR---KTNASAALAA 552 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d--~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~---~~G~~gv~vg 552 (578)
+..+++.+.+.|++.|++...+-++..--.+ .++++.+.+.+ .+|||++-|-.+.++..++.+ +.|++++++.
T Consensus 38 l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~ 117 (304)
T 3l21_A 38 AARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVV 117 (304)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 4567788889999999999877665443332 24666665544 589999988778887666543 3699999999
Q ss_pred hhhccCCCCHHHHHHHHHh
Q 045794 553 GIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 553 sa~~~~~~~~~~~~~~l~~ 571 (578)
.-+|..+ +-+++.+|++.
T Consensus 118 ~P~y~~~-s~~~l~~~f~~ 135 (304)
T 3l21_A 118 TPYYSKP-PQRGLQAHFTA 135 (304)
T ss_dssp CCCSSCC-CHHHHHHHHHH
T ss_pred CCCCCCC-CHHHHHHHHHH
Confidence 8887765 77888777753
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=88.16 E-value=0.3 Score=46.60 Aligned_cols=45 Identities=16% Similarity=0.039 Sum_probs=34.4
Q ss_pred HHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 344 QVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 344 ~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+-++++++.+ ..||++.|||+- +. +++++++||+.+++|+..+..
T Consensus 151 ~~i~~lr~~~~~~~~i~v~GGI~~-~~-----------~~~~~~aGad~ivvG~~I~~a 197 (216)
T 1q6o_A 151 ADITAIKRLSDMGFKVTVTGGLAL-ED-----------LPLFKGIPIHVFIAGRSIRDA 197 (216)
T ss_dssp HHHHHHHHHHHTTCEEEEESSCCG-GG-----------GGGGTTSCCSEEEESHHHHTS
T ss_pred HHHHHHHHhcCCCCcEEEECCcCh-hh-----------HHHHHHcCCCEEEEeehhcCC
Confidence 4444444443 578999999994 43 788999999999999988863
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=88.09 E-value=2.2 Score=41.06 Aligned_cols=40 Identities=23% Similarity=0.210 Sum_probs=34.4
Q ss_pred cccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 354 FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 354 ~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
.+++..||||++.+| ++.+...|+|-+.||++.++. ++|.
T Consensus 176 ~~~ilyggsV~~~n~-----------~~~~~~~~vDG~LVG~a~l~a-~~~~ 215 (225)
T 1hg3_A 176 EVKVLCGAGISTGED-----------VKKAIELGTVGVLLASGVTKA-KDPE 215 (225)
T ss_dssp TSEEEEESSCCSHHH-----------HHHHHHTTCSEEEESHHHHTC-SSHH
T ss_pred CCEEEEeCCCCcHHH-----------HHHHHhCCCCEEEeCHHHHCC-cCHH
Confidence 578999999999876 888999999999999999983 4453
|
| >4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A | Back alignment and structure |
|---|
Probab=88.08 E-value=1 Score=46.65 Aligned_cols=142 Identities=13% Similarity=0.074 Sum_probs=90.9
Q ss_pred HHHHHHHHcCcce--eecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccC
Q 045794 378 EVASEYFRSGADK--ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDL 455 (578)
Q Consensus 378 ~~~~~~l~~Ga~~--vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~ 455 (578)
+.++++.+.|... +=+|...-. ..+.++.+.+.+|++ +-+.+|+..
T Consensus 150 ~~~~~~~~~Gf~~~K~k~g~~~~~------------di~~v~avr~~~g~~-~~l~vDaN~------------------- 197 (378)
T 4hpn_A 150 SEMAERRAEGFHACKIKIGFGVEE------------DLRVIAAVREAIGPD-MRLMIDANH------------------- 197 (378)
T ss_dssp HHHHHHHHTTCSEEEEECCSCHHH------------HHHHHHHHHHHHTTT-SEEEEECTT-------------------
T ss_pred HHHHHHHHhccceecccccCChHH------------HHHHHHHHHHhcCCc-EEEEEecCc-------------------
Confidence 3455566778764 344532211 136788998999865 677788543
Q ss_pred CCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHH
Q 045794 456 GPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVE 535 (578)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~e 535 (578)
+|.. -+..++++.++++++..| +.=...-|++.++++++.+++||.+.=-+.+..
T Consensus 198 ---------------~~~~---~~A~~~~~~l~~~~i~~i-------EeP~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~ 252 (378)
T 4hpn_A 198 ---------------GYTV---TEAITLGDRAAGFGIDWF-------EEPVVPEQLDAYARVRAGQPIPVAGGETWHGRY 252 (378)
T ss_dssp ---------------CCCH---HHHHHHHHHHGGGCCSCE-------ECCSCTTCHHHHHHHHHHSSSCEEECTTCCHHH
T ss_pred ---------------ccCH---HHHHHHHhhhhhcccchh-------hcCCCccchhhhHHHHhhCCceeeCCcCccchH
Confidence 2321 135678888888876432 122223489999999999999999888899999
Q ss_pred HHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 536 HFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 536 Di~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
|++++++...++.+.+--.-..|-.....+.+...+.|++|
T Consensus 253 ~~~~~i~~~a~d~i~~d~~~~GGit~~~~ia~~A~~~gi~v 293 (378)
T 4hpn_A 253 GMWQALSAGAVDILQPDLCGCGGFSEIQKIATLATLHGVRI 293 (378)
T ss_dssp HHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHHTCEE
T ss_pred hHHHHHHcCCCCEEeeCCeeCCChhHHHHHHHHHHHcCCeE
Confidence 99999974445544422222233333556666777778775
|
| >4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A | Back alignment and structure |
|---|
Probab=87.90 E-value=1.6 Score=45.97 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=89.3
Q ss_pred HHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCC
Q 045794 378 EVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGP 457 (578)
Q Consensus 378 ~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~ 457 (578)
+.++++.+.|...+=+..-.-.+. ..+.++.+.+.+|++ +-+.+|+..
T Consensus 194 ~~a~~~~~~G~~~~K~k~g~~~~~----------~~~~v~~vR~~~g~~-~~l~vDaN~--------------------- 241 (412)
T 4h1z_A 194 ELAAAWQAKGFSSFKFASPVADDG----------VAKEMEILRERLGPA-VRIACDMHW--------------------- 241 (412)
T ss_dssp HHHHHHHHTTCCEEEEEGGGCTTC----------HHHHHHHHHHHHCSS-SEEEEECCS---------------------
T ss_pred HHHHHHHhcCcceeccccccchhh----------HHHHHHHHHhccCCe-EEEEecccc---------------------
Confidence 446677788877555532211110 124567777888865 667788543
Q ss_pred CCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 045794 458 NGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHF 537 (578)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi 537 (578)
+|.. -+...++++++++++..+ +.=..--|++.++++++.+++||.+.=-+.+..|+
T Consensus 242 -------------~~~~---~~A~~~~~~l~~~~l~~i-------EqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~ 298 (412)
T 4h1z_A 242 -------------AHTA---SEAVALIKAMEPHGLWFA-------EAPVRTEDIDGLARVAASVSTAIAVGEEWRTVHDM 298 (412)
T ss_dssp -------------CCCH---HHHHHHHHHHGGGCEEEE-------ECCSCTTCHHHHHHHHHHCSSEEEECTTCCSHHHH
T ss_pred -------------CCCH---HHHHHHHHhhccccccee-------cCCCCccchHHHHHHHhhcCCccccCCcccchHhH
Confidence 2321 135678888888875321 11222348999999999999999988889999999
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+++++...++.+. -..-..|-.....+.+.....|++|
T Consensus 299 ~~~i~~~a~div~-~d~~~GGit~~~kia~~A~~~gi~v 336 (412)
T 4h1z_A 299 VPRVARRALAIVQ-PEMGHKGITQFMRIGAYAHVHHIKV 336 (412)
T ss_dssp HHHHHTTCCSEEC-CCHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHcCCCCEEE-ecCCCCChHHHHHHHHHHHHCCCcE
Confidence 9998743344333 2332333333455666777788876
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=87.83 E-value=4 Score=42.47 Aligned_cols=144 Identities=18% Similarity=0.176 Sum_probs=90.9
Q ss_pred HHHHHHHHHcCcc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++++.|.. |+=+|...+.++ .+.++.+.+.+|. +-+.+|+..
T Consensus 149 ~~~a~~~~~~G~~~iKlKvg~~~~~~d-----------~~~v~avR~~~~~--~~L~vDaN~------------------ 197 (389)
T 3s5s_A 149 EEAARRAAAMGFRALKVKVGGRLAASD-----------PARIEAIHAAAPG--ASLILDGNG------------------ 197 (389)
T ss_dssp HHHHHHHHHHTCCEEEEECCGGGTTTH-----------HHHHHHHHHHCTT--CEEEEECTT------------------
T ss_pred HHHHHHHHHcCCCeEEEEecCCChHHH-----------HHHHHHHHHhCCC--CeEEEECCC------------------
Confidence 4567778888865 455565433322 3778888888973 477788543
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|... +...+++++.+... .+.+.. .=..--|++.++++++.+.+||.+.=-+.+.
T Consensus 198 ----------------~w~~~---~A~~~~~~L~~~~~-~i~~iE----eP~~~~d~~~~~~l~~~~~iPIa~dEs~~~~ 253 (389)
T 3s5s_A 198 ----------------GLTAG---EALALVAHARRLGA-DVALLE----QPVPRDDWDGMKEVTRRAGVDVAADESAASA 253 (389)
T ss_dssp ----------------CSCHH---HHHHHHHHHHHTTC-EEEEEE----CCSCTTCHHHHHHHHHHSSSCEEESTTCSSH
T ss_pred ----------------CCCHH---HHHHHHHHHhhCCC-CeEEEE----CCCCcccHHHHHHHHhhCCCCEEECCCCCCH
Confidence 23211 24566777733223 233221 1112237999999999999999988889999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.|++++++...++.+. -+....|-....++.+.....|++|
T Consensus 254 ~~~~~~i~~~a~d~v~-~k~~~GGit~~~~i~~~A~~~gi~~ 294 (389)
T 3s5s_A 254 EDVLRVAAERAATVVN-IKLMKGGIAEALDIAAVARAAGLGL 294 (389)
T ss_dssp HHHHHHHHTTCCSEEE-ECHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCCCEEE-ecCCCCCHHHHHHHHHHHHHcCCeE
Confidence 9999998744455554 3333344334556677778888876
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=87.68 E-value=4.1 Score=40.94 Aligned_cols=100 Identities=23% Similarity=0.311 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHh---hhccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTS---ENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~---~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
...++.|+.+.+.||+ ++|+.+-...........+++..+. +.+++||.++. +..+.++..
T Consensus 37 ~~a~~~A~~~v~~GAd---iIDIg~g~~~v~~~eem~rvv~~i~~~~~~~~vpisIDT-------------~~~~V~eaa 100 (300)
T 3k13_A 37 DEALSIARQQVEDGAL---VIDVNMDDGLLDARTEMTTFLNLIMSEPEIARVPVMIDS-------------SKWEVIEAG 100 (300)
T ss_dssp HHHHHHHHHHHHTTCS---EEEEECCCTTSCHHHHHHHHHHHHHTCHHHHTSCEEEEC-------------SCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC---EEEECCCCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEeC-------------CCHHHHHHH
Confidence 4567788999999998 7888762111111112223333333 34689998743 345779999
Q ss_pred HH--cCcceeecchhhhcc-chhhhhccccCCchHHHHHHHhCCCCeEEEEEe
Q 045794 384 FR--SGADKISIGSDAVYA-AEDYLKTGVKTGKSSLEQISRVYGNQAVVVSID 433 (578)
Q Consensus 384 l~--~Ga~~vv~gt~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD 433 (578)
++ .|++ +|++..... .+.| +-+-.++++||..-|+...|
T Consensus 101 L~~~~Ga~--iINdIs~~~~d~~~---------~~~~~l~a~~ga~vV~mh~d 142 (300)
T 3k13_A 101 LKCLQGKS--IVNSISLKEGEEVF---------LEHARIIKQYGAATVVMAFD 142 (300)
T ss_dssp HHHCSSCC--EEEEECSTTCHHHH---------HHHHHHHHHHTCEEEEESEE
T ss_pred HHhcCCCC--EEEeCCcccCChhH---------HHHHHHHHHhCCeEEEEeeC
Confidence 99 6875 666655442 1212 23456678898654444444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 578 | ||||
| d1jvna1 | 323 | c.1.2.1 (A:230-552) Cyclase subunit (or domain) of | 2e-87 | |
| d1h5ya_ | 252 | c.1.2.1 (A:) Cyclase subunit (or domain) of imidaz | 9e-50 | |
| d1ka9f_ | 251 | c.1.2.1 (F:) Cyclase subunit (or domain) of imidaz | 5e-43 | |
| d1jvna2 | 232 | c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain | 7e-40 | |
| d1thfd_ | 253 | c.1.2.1 (D:) Cyclase subunit (or domain) of imidaz | 2e-39 | |
| d2abwa1 | 218 | c.23.16.1 (A:2-219) Pyridoxine biosynthesis protei | 2e-37 | |
| d1k9vf_ | 200 | c.23.16.1 (F:) GAT subunit, HisH, (or domain) of i | 1e-34 | |
| d1ka9h_ | 195 | c.23.16.1 (H:) GAT subunit, HisH, (or domain) of i | 1e-31 | |
| d2nv0a1 | 195 | c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bac | 3e-29 | |
| d1q7ra_ | 202 | c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus | 2e-27 | |
| d1vzwa1 | 239 | c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoi | 1e-18 | |
| d2a9va1 | 196 | c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA | 3e-11 | |
| d1qo2a_ | 241 | c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidaz | 4e-10 | |
| d1qo2a_ | 241 | c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidaz | 1e-04 | |
| d1gpma2 | 205 | c.23.16.1 (A:3-207) GMP synthetase {Escherichia co | 8e-10 | |
| d1a9xb2 | 228 | c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthe | 1e-08 | |
| d1wl8a1 | 188 | c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA | 3e-08 | |
| d1l9xa_ | 288 | c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Ho | 9e-08 | |
| d1qdlb_ | 195 | c.23.16.1 (B:) Anthranilate synthase GAT subunit, | 8e-07 | |
| d1o1ya_ | 230 | c.23.16.1 (A:) Hypothetical protein TM1158 {Thermo | 8e-06 | |
| d1i7qb_ | 192 | c.23.16.1 (B:) Anthranilate synthase GAT subunit, | 8e-04 |
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Score = 272 bits (695), Expect = 2e-87
Identities = 189/316 (59%), Positives = 236/316 (74%), Gaps = 1/316 (0%)
Query: 264 LKLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADE 323
L +R+IACLDVR ND+GDLVVTKGDQYDVRE + VRNLGKPV+LA++YY++GADE
Sbjct: 5 YGLTRRIIACLDVRTNDQGDLVVTKGDQYDVREKSDGKGVRNLGKPVQLAQKYYQQGADE 64
Query: 324 ISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383
++FLNIT FRD PL D PML+VL+ ++ VFVPLTVGGGI+D D +G +LEVAS Y
Sbjct: 65 VTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLY 124
Query: 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSL-EQISRVYGNQAVVVSIDPRRVYITHP 442
FRSGADK+SIG+DAVYAAE Y + G + +S E IS+ YG QAVV+S+DP+RVY+
Sbjct: 125 FRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQ 184
Query: 443 NDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDC 502
D + K GPNGE+Y WYQCT+ GGRE R +G +EL +A E LGAGEILLNCID
Sbjct: 185 ADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDK 244
Query: 503 DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPI 562
DG G+D++LI+ + DAV IPVIASSGAG EHF + F KT A A L AG+FHR E +
Sbjct: 245 DGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTV 304
Query: 563 QSVKEHLYKEGIEVRI 578
VKE+L + G++VR+
Sbjct: 305 NDVKEYLLEHGLKVRM 320
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 170 bits (432), Expect = 9e-50
Identities = 117/313 (37%), Positives = 168/313 (53%), Gaps = 62/313 (19%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
+A R+I CLD+ D G VV KG + +R +G PVE+A +Y +EGADEI+
Sbjct: 2 MALRIIPCLDI---DGGAKVVVKGVNFQ--------GIREVGDPVEMAVRYEEEGADEIA 50
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
L+IT + + ++ +E V +P+ VGGG+R LE A+ FR
Sbjct: 51 ILDITAAPEG---RATFIDSVKRVAEAVSIPVLVGGGVRS-----------LEDATTLFR 96
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
+GADK+S+ + AV + ++R +G+Q+ VV+ID +
Sbjct: 97 AGADKVSVNTAAVR------------NPQLVALLAREFGSQSTVVAIDAKW--------- 135
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
NGE +Y+ V GGRE + A + AK VE+LGAGEILL ID DG
Sbjct: 136 ------------NGE---YYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGT 180
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G G+D++LI+ ++D+V IPVIAS GAG VEHF + A A LAA +FH + + I V
Sbjct: 181 GLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAA-AAGADAVLAASLFHFRVLSIAQV 239
Query: 566 KEHLYKEGIEVRI 578
K +L + G+EVRI
Sbjct: 240 KRYLKERGVEVRI 252
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Score = 152 bits (385), Expect = 5e-43
Identities = 112/313 (35%), Positives = 163/313 (52%), Gaps = 64/313 (20%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR++ CLDV G +V KG + +R+ G PVE AR Y + GADE+
Sbjct: 2 LAKRIVPCLDVH---AGRVV--KGVNFV--------NLRDAGDPVEAARAYDEAGADELV 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+I+ + +L V+ +E VF+PLTVGGG+R LE A +
Sbjct: 49 FLDISATHEE---RAILLDVVARVAERVFIPLTVGGGVRS-----------LEDARKLLL 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
SGADK+S+ S AV E + +++ +G QAVV++ID R
Sbjct: 95 SGADKVSVNSAAVRRPEL------------IRELADHFGAQAVVLAIDARWRGD------ 136
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+ + V GGR + A E A +LGAGEILL +D DG
Sbjct: 137 ------------------FPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGT 178
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
+G+D+ L +++++AV +PVIAS GAG +EHF + F + A AALAA +FH E+PI +
Sbjct: 179 KEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAF-QAGAEAALAASVFHFGEIPIPKL 237
Query: 566 KEHLYKEGIEVRI 578
K +L ++G+ VR+
Sbjct: 238 KRYLAEKGVHVRL 250
|
| >d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Score = 143 bits (360), Expect = 7e-40
Identities = 78/224 (34%), Positives = 114/224 (50%), Gaps = 8/224 (3%)
Query: 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED--ILNANRLIFPGVGAFAAAMDVLNK 106
VV ++D +GN++S+ NAI HLG+ ++ V++P+D I +RLI PGVG + +D L
Sbjct: 6 VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFN 65
Query: 107 TGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQ 166
G + + YIE +P +GIC+GLQ LF S E+ GL I + RFD S
Sbjct: 66 RGFEKPIREYIESGKPIMGICVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEI 125
Query: 167 IGWNALQITKDSEILDD----VGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGD-NFIASV 221
+ + LD H + + + +N W + YG FIA+V
Sbjct: 126 GWNSCIPSENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAV 185
Query: 222 RRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTN-IPKKPTEGKAL 264
+ N+ A QFHPEKSG GL+V+ FL ++ IP E K L
Sbjct: 186 NKNNIFATQFHPEKSGKAGLNVIENFLKQQSPPIPNYSAEEKEL 229
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Score = 142 bits (359), Expect = 2e-39
Identities = 108/313 (34%), Positives = 158/313 (50%), Gaps = 64/313 (20%)
Query: 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEIS 325
LAKR+IACLDV+ D V KG ++ +R+ G PVEL + Y + G DE+
Sbjct: 2 LAKRIIACLDVK-----DGRVVKGSNFE--------NLRDSGDPVELGKFYSEIGIDELV 48
Query: 326 FLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385
FL+IT + ML+++ +E + +P TVGGGI DF A+ E
Sbjct: 49 FLDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIHDFETAS-----------ELIL 94
Query: 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDV 445
GADK+SI + AV S + QI++ +G+QAVVV+ID +RV
Sbjct: 95 RGADKVSINTAAV------------ENPSLITQIAQTFGSQAVVVAIDAKRV-------- 134
Query: 446 EFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505
+ G++ I + VE GAGEILL ID DG
Sbjct: 135 ----------------DGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT 178
Query: 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSV 565
G+D ++I+ + ++P+IAS GAG +EHF + F A AALAA +FH +E+ ++ +
Sbjct: 179 KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-LAGADAALAASVFHFREIDVREL 237
Query: 566 KEHLYKEGIEVRI 578
KE+L K G+ VR+
Sbjct: 238 KEYLKKHGVNVRL 250
|
| >d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Pyridoxine biosynthesis protein 2, Pdx2 species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 135 bits (341), Expect = 2e-37
Identities = 38/213 (17%), Positives = 63/213 (29%), Gaps = 12/213 (5%)
Query: 46 SDSVVTLLDYGAGNVRSVRNAIRHLGFG---IKDVQTPEDILNANRLIFPGVGAFAAAMD 102
S+ + +L G+ N L I V+ D+ + L+ PG +
Sbjct: 1 SEITIGVLSLQ-GDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRC 59
Query: 103 VLNK-TGMAEAL-CAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVV---GRFD 157
+ + AL +P G C G LL ++ E + G
Sbjct: 60 CAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITIC 119
Query: 158 SSNGFRVPQIGWNALQITKDSEILDDV-GDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDN 216
+ +L I DS + + + + S +YG N
Sbjct: 120 RNFYGSQNDSFICSLNIISDSSAFKKDLTAACIRAPYIREILSDEVKVLATFSHESYGPN 179
Query: 217 FIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLH 249
IA+V + N FHPE + F
Sbjct: 180 IIAAVEQNNCLGTVFHPELLPHTA--FQQYFYE 210
|
| >d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Score = 127 bits (320), Expect = 1e-34
Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 15/203 (7%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQ----TPEDILNANRLIFPGVGAFAAAMDVLN 105
+ ++ G GN+ ++ ++ +DV + L PGVG F M L
Sbjct: 3 IGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGEGMRRLR 62
Query: 106 KTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVP 165
+ + + + ++E +R +G+CLG+QLLF+ SEE V GL LI G V + S +
Sbjct: 63 ENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMG 122
Query: 166 QIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGN 225
+ + YFVH+YRA+ + + + +T G+ F ++VR+G
Sbjct: 123 WNEVIFKDTFPN---------GYYYFVHTYRAVC--EEEHVLGTTEYDGEIFPSAVRKGR 171
Query: 226 VHAVQFHPEKSGDVGLSVLRRFL 248
+ QFHPEKS +G +L + +
Sbjct: 172 ILGFQFHPEKSSKIGRKLLEKVI 194
|
| >d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Score = 119 bits (298), Expect = 1e-31
Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 9/199 (4%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
L+DYG+GN+RS A+ GF + Q P+ A+ L+ PG G F M ++G
Sbjct: 3 ALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQESGF 62
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
E + ++E+ PFLGIC+G+Q+L++ SEE + G+ FR ++
Sbjct: 63 VERVRRHLERGLPFLGICVGMQVLYEGSEEAPG------VRGLGLVPGEVRRFRAGRVPQ 116
Query: 170 NALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAV 229
+ + H YF +SY + + G F A + + N+ A
Sbjct: 117 MGWNALEFGGAFAPLTGRHFYFANSYYGPLTPYSLGK---GEYEGTPFTALLAKENLLAP 173
Query: 230 QFHPEKSGDVGLSVLRRFL 248
QFHPEKSG GL+ L
Sbjct: 174 QFHPEKSGKAGLAFLALAR 192
|
| >d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus subtilis [TaxId: 1423]
Score = 112 bits (281), Expect = 3e-29
Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 20/200 (10%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ +L G VR +AI G V+ PE + + LI PG +++
Sbjct: 4 IGVLGLQ-GAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGE-STTMRRLIDTYQF 61
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
E L + + +P G C GL +L + + N
Sbjct: 62 MEPLREFAAQGKPMFGTCAGLIILAKEIAGS-----------DNPHLGLLNVVVERNSFG 110
Query: 170 NALQITKDSEILDDVGDH-HVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHA 228
+ + + + + F+ + + + +N E + +A ++G
Sbjct: 111 RQVDSFEADLTIKGLDEPFTGVFIRAPHILEAGENVEV---LSEHNGRIVA-AKQGQFLG 166
Query: 229 VQFHPEKSGDVGLSVLRRFL 248
FHPE + D + + F+
Sbjct: 167 CSFHPELTEDHRV--TQLFV 184
|
| >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus stearothermophilus [TaxId: 1422]
Score = 107 bits (267), Expect = 2e-27
Identities = 44/200 (22%), Positives = 72/200 (36%), Gaps = 18/200 (9%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ +L G VR AI G V+ E + + L+ PG G ++++ G+
Sbjct: 9 IGVLGLQ-GAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPG-GESTTMRRLIDRYGL 66
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
E L + +P G C GL LL + LGL+ V R +
Sbjct: 67 MEPLKQFAAAGKPMFGTCAGLILLAKRIVGY-DEPHLGLMDITVERNSFGRQRESFEAEL 125
Query: 170 NALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAV 229
+ + G V+ + + + V Y D +A R+G
Sbjct: 126 SIKGVGD--------GFVGVFIRAPHI----VEAGDGVDVLATYNDRIVA-ARQGQFLGC 172
Query: 230 QFHPEKSGDVGLSVLRRFLH 249
FHPE + D L ++ FL+
Sbjct: 173 SFHPELTDDHRL--MQYFLN 190
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Score = 83.4 bits (205), Expect = 1e-18
Identities = 37/304 (12%), Positives = 89/304 (29%), Gaps = 70/304 (23%)
Query: 268 KRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFL 327
++ +DVR G V + + + G P+E A + + GA+ + +
Sbjct: 3 LELLPAVDVR---DGQAV--RLVHGE------SGTETSYGSPLEAALAWQRSGAEWLHLV 51
Query: 328 NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387
++ ++ ++ + + + + + + +G
Sbjct: 52 DLDAAFGTG----DNRALIAEVAQAMDIKVELS-----------GGIRDDDTLAAALATG 96
Query: 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEF 447
++++G+ A+ E K + G +I+
Sbjct: 97 CTRVNLGTAALETPEWVAKVIAEHGD----KIAVGL------------------------ 128
Query: 448 KAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK 507
G YE + G ++ I DG +
Sbjct: 129 --------------DVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQ 174
Query: 508 GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDV--FRKTNASAALAAGIFHRKEVPIQSV 565
G +++L+K + A PV+AS G +++ + A+ + K ++
Sbjct: 175 GPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEA 234
Query: 566 KEHL 569
E
Sbjct: 235 LEAT 238
|
| >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthase subunit A, GuaAA species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 60.3 bits (145), Expect = 3e-11
Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 24/202 (11%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ ++D G +R LG K V P DI ++ G+ A ++ +
Sbjct: 4 IYVVDNGGQWTHREWRVLRELGVDTKIV--PNDIDSSELDGLDGLVLSGGAPNIDEELDK 61
Query: 110 AEALCAYIE-KDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIG 168
++ YI+ + P LGIC+G Q + S + P+ G
Sbjct: 62 LGSVGKYIDDHNYPILGICVGAQFIALH------------------FGASVVKAKHPEFG 103
Query: 169 WNALQITKDSEILDDVGDH-HVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVH 227
+ + I + V+ H+ + D+ +S+ R ++
Sbjct: 104 KTKVSVMHSENIFGGLPSEITVWENHNDEIINLPDDFTLAASSATCQVQGFYHKTR-PIY 162
Query: 228 AVQFHPE-KSGDVGLSVLRRFL 248
A QFHPE + G + R F+
Sbjct: 163 ATQFHPEVEHTQYGRDIFRNFI 184
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Score = 58.1 bits (139), Expect = 4e-10
Identities = 23/208 (11%), Positives = 55/208 (26%), Gaps = 15/208 (7%)
Query: 377 LEVASEYFRSGADKISI----------GSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426
+E+ + G I + G + + + + +
Sbjct: 33 VELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLSEFAEHIQIGGGIRSLDYAEKLR 92
Query: 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKA 486
+ + + + + G I L K
Sbjct: 93 KLGYRRQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKR 152
Query: 487 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFR---- 542
+++ G EI+ I+ DG + D L K I+ + V+A+ G + +
Sbjct: 153 LKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTE 212
Query: 543 -KTNASAALAAGIFHRKEVPIQSVKEHL 569
+ F + ++ +K +
Sbjct: 213 TNGLLKGVIVGRAFLEGILTVEVMKRYA 240
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Score = 41.5 bits (96), Expect = 1e-04
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 269 RVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLN 328
V+ +D+ ++ KG KEN + PVEL + +EG I ++
Sbjct: 2 LVVPAIDLFRGKVARMI--KGR--------KENTIFYEKDPVELVEKLIEEGFTLIHVVD 51
Query: 329 IT 330
++
Sbjct: 52 LS 53
|
| >d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthetase species: Escherichia coli [TaxId: 562]
Score = 56.5 bits (135), Expect = 8e-10
Identities = 31/201 (15%), Positives = 66/201 (32%), Gaps = 12/201 (5%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGM 109
+ +LD+G+ + V +R LG + + + R P + + +
Sbjct: 8 ILILDFGSQYTQLVARRVRELGVYCE-LWAWDVTEAQIRDFNPSGIILSGGPESTTEENS 66
Query: 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW 169
A E P G+C G+Q + + + +V +
Sbjct: 67 PRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEAS----------NEREFGYAQVEVVND 116
Query: 170 NALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAV 229
+AL + + D ++ + + + ++ I + + V
Sbjct: 117 SALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIMANEEKRFYGV 176
Query: 230 QFHPEKS-GDVGLSVLRRFLH 249
QFHPE + G+ +L RF+
Sbjct: 177 QFHPEVTHTRQGMRMLERFVR 197
|
| >d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 53.7 bits (128), Expect = 1e-08
Identities = 34/208 (16%), Positives = 65/208 (31%), Gaps = 39/208 (18%)
Query: 50 VTLLDYGAGNVRSVRNAIRHLGFGIKDV---QTPEDIL--NANRLIFPGVGAFAAAMDVL 104
V D+GA R++ + G + V + ED+L N + + A D
Sbjct: 42 VVAYDFGA--KRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCD-- 97
Query: 105 NKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRV 164
A+ ++E D P GICLG QLL ++G +
Sbjct: 98 ---YAITAIQKFLETDIPVFGICLGHQLLAL-----------------------ASGAKT 131
Query: 165 PQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRR- 223
++ + + ++ H + + + + D + + R
Sbjct: 132 VKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRT 191
Query: 224 -GNVHAVQFHPEKSG--DVGLSVLRRFL 248
+ Q +PE S + F+
Sbjct: 192 DKPAFSFQGNPEASPGPHDAAPLFDHFI 219
|
| >d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: gamma-glutamyl hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (122), Expect = 9e-08
Identities = 22/164 (13%), Positives = 48/164 (29%), Gaps = 16/164 (9%)
Query: 85 NANRLIFPGVGA-------FAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLL---F 134
+ N ++FPG A N + + P G CLG + L
Sbjct: 59 SINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDD----GDYFPVWGTCLGFEELSLLI 114
Query: 135 QSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHS 194
+ + + + + L + + + +
Sbjct: 115 SGECLLTATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNF 174
Query: 195 YRAMPSDDNKEWVSSTCNYGDNFIASV--RRGNVHAVQFHPEKS 236
+++ + FI+++ + V+ VQ+HPEK+
Sbjct: 175 TMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKA 218
|
| >d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 47.6 bits (112), Expect = 8e-07
Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 20/177 (11%)
Query: 76 DVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135
D + + I + G++ + Y+ K P LG+CLG Q +
Sbjct: 34 DEISIKGIERIDPDRLIISPGPGTPEKR-EDIGVSLDVIKYLGKRTPILGVCLGHQAIGY 92
Query: 136 SSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSY 195
+ + R ++ I + Y
Sbjct: 93 AFGAK------------IRRARKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVV 140
Query: 196 RAMPSDDNKEWVSSTCNYGDNFIASVR--RGNVHAVQFHPEKS-GDVGLSVLRRFLH 249
+ + +S+ DN I ++ ++ VQFHPE +G +L FL+
Sbjct: 141 DEVHRPLIVDAISAE----DNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFLN 193
|
| >d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein TM1158 species: Thermotoga maritima [TaxId: 2336]
Score = 45.0 bits (105), Expect = 8e-06
Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 33/195 (16%)
Query: 62 SVRNAIRHLGFGIKDVQT------PEDILNANRLIFPGVGAFAAAMDVLNK-TGMAEALC 114
+ + R + + T + + ++ G A + + +
Sbjct: 19 MMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIE 78
Query: 115 AYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQI 174
++K+ PFLGICLG Q+L + G +IGW ++
Sbjct: 79 EILKKEIPFLGICLGSQMLAKVL-----------------GASVYRGKNGEEIGWYFVEK 121
Query: 175 TKDSEILDDVGDH-HVYFVHSYRAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHP 233
D++ + D V+ H +S G +QFH
Sbjct: 122 VSDNKFFREFPDRLRVFQWHGDTFDLPRRATRVFTSE----KYENQGFVYGKAVGLQFHI 177
Query: 234 EKSGDVGLSVLRRFL 248
E VG ++R++
Sbjct: 178 E----VGARTMKRWI 188
|
| >d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Serratia marcescens [TaxId: 615]
Score = 38.7 bits (89), Expect = 8e-04
Identities = 26/173 (15%), Positives = 46/173 (26%), Gaps = 28/173 (16%)
Query: 79 TPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSE 138
E + + V + ++ G L + P +GICLG Q + +
Sbjct: 39 IIERLQHME----QPVLMLSPGPGTPSEAGCMPELLQRLRGQLPIIGICLGHQAIVE--- 91
Query: 139 ENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAM 198
G + G + + + + +
Sbjct: 92 ----AYGGQVGQA-----------GEILHGKASAIAHDGEGMFAGMANPLPVARYHSLVG 136
Query: 199 PSDDNKEWVSSTCNYGDNFIASVR--RGNVHAVQFHPEKS-GDVGLSVLRRFL 248
N + + +VR R V QFHPE G +L + L
Sbjct: 137 S---NIPADLTVNARFGEMVMAVRDDRRRVCGFQFHPESILTTHGARLLEQTL 186
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 578 | |||
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 100.0 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 100.0 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 100.0 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 100.0 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 100.0 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 100.0 | |
| d1jvna2 | 232 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.97 | |
| d1k9vf_ | 200 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.96 | |
| d1ka9h_ | 195 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.95 | |
| d1wl8a1 | 188 | GMP synthase subunit A, GuaAA {Archaeon Pyrococcus | 99.95 | |
| d2a9va1 | 196 | GMP synthase subunit A, GuaAA {Archaeon Thermoplas | 99.94 | |
| d2nv0a1 | 195 | Hypothetical protein YaaE {Bacillus subtilis [TaxI | 99.93 | |
| d1a9xb2 | 228 | Carbamoyl phosphate synthetase, small subunit C-te | 99.93 | |
| d1q7ra_ | 202 | Hypothetical protein YaaE {Bacillus stearothermoph | 99.93 | |
| d2abwa1 | 218 | Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p | 99.92 | |
| d1qdlb_ | 195 | Anthranilate synthase GAT subunit, TrpG {Archaeon | 99.92 | |
| d1gpma2 | 205 | GMP synthetase {Escherichia coli [TaxId: 562]} | 99.91 | |
| d1i7qb_ | 192 | Anthranilate synthase GAT subunit, TrpG {Serratia | 99.9 | |
| d1o1ya_ | 230 | Hypothetical protein TM1158 {Thermotoga maritima [ | 99.88 | |
| d1s1ma1 | 258 | CTP synthase PyrG, C-terminal domain {Escherichia | 99.74 | |
| d1vcoa1 | 250 | CTP synthase PyrG, C-terminal domain {Thermus ther | 99.71 | |
| d1l9xa_ | 288 | gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta | 99.66 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 99.25 | |
| d2ghra1 | 281 | Homoserine O-succinyltransferase HTS (MetA) {Bacil | 99.23 | |
| d1t3ta2 | 262 | FGAM synthase PurL, amidotransferase domain {Salmo | 99.13 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.09 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 98.97 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.9 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.89 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.84 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.77 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.72 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.71 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 98.66 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 98.66 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 98.33 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 98.32 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 98.27 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 98.26 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 98.25 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 98.15 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 98.13 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 98.1 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 98.05 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 98.03 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 98.02 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 98.01 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 97.97 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 97.94 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 97.89 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 97.88 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 97.88 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 97.82 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 97.71 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 97.7 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 97.7 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 97.69 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 97.64 | |
| d1g2ia_ | 166 | Intracellular protease {Archaeon Pyrococcus horiko | 97.61 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 97.59 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 97.57 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 97.57 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 97.56 | |
| d1oi4a1 | 170 | Hypothetical protein YhbO {Escherichia coli [TaxId | 97.53 | |
| d1p80a1 | 156 | Catalase, C-terminal domain {Escherichia coli, HPI | 97.49 | |
| d1sy7a1 | 184 | Catalase, C-terminal domain {Neurospora crassa [Ta | 97.49 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 97.45 | |
| d1p5fa_ | 186 | DJ-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.44 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 97.36 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 97.32 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 97.26 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 97.25 | |
| d2fexa1 | 188 | Hypothetical protein Atu0886 {Agrobacterium tumefa | 97.24 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 97.23 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 97.23 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 97.23 | |
| d2ab0a1 | 195 | Protein ThiJ (YajL) {Escherichia coli [TaxId: 562] | 97.22 | |
| d1vhqa_ | 217 | Putative sigma cross-reacting protein 27A (SCRP-27 | 97.16 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 97.13 | |
| d1u9ca_ | 221 | GK2698 ortholog {Bacillus stearothermophilus [TaxI | 97.11 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 97.0 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 96.98 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 96.95 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 96.93 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 96.91 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 96.89 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 96.86 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 96.85 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 96.84 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 96.73 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 96.72 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 96.5 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 96.43 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 96.38 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 96.31 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 96.28 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 96.27 | |
| d1qvwa_ | 236 | Hypothetical protein Ydr533Cp {Baker's yeast (Sacc | 96.2 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 96.07 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 96.04 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 95.98 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 95.98 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 95.9 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 95.89 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 95.85 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 95.79 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 95.77 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 95.68 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 95.65 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 95.65 | |
| d1fyea_ | 229 | Aspartyl dipeptidase PepE {Salmonella typhimurium | 95.51 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 95.41 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 95.38 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 95.33 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 95.28 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 95.23 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 95.22 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 95.15 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 95.04 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 94.89 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 94.75 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 94.67 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 94.67 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 94.65 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 94.63 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 94.54 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 94.52 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 94.5 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 94.44 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 94.44 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 94.43 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 94.29 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 94.26 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 94.26 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 94.24 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 94.24 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 94.16 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 94.13 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 93.92 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.82 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 93.61 | |
| d1n57a_ | 279 | HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} | 93.57 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 93.57 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 93.47 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 93.39 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 93.29 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 93.23 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 93.1 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 93.09 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 93.06 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 92.81 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 92.63 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 92.58 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 92.4 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 92.4 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 92.01 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 91.54 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.36 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 91.33 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 91.2 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 91.2 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 91.01 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.0 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 90.71 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 90.54 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 90.47 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 90.38 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 90.22 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 90.22 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 89.84 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 89.71 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 89.67 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 89.62 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 89.59 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 89.49 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 89.35 | |
| d1z0sa1 | 249 | Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa | 88.84 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 88.84 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 88.72 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 88.6 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 88.07 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 87.97 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 87.76 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 87.44 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 87.01 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 86.94 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 86.93 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 86.79 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 86.69 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 86.61 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 86.5 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 86.14 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 85.79 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 85.32 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 85.26 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 84.99 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 84.93 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 84.7 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 84.58 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 84.52 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 84.5 | |
| d1zh2a1 | 119 | Transcriptional regulatory protein KdpE, N-termina | 84.48 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 84.33 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 84.19 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 83.87 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 83.52 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 83.5 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 83.31 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 82.42 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 82.33 | |
| d1qkka_ | 140 | Transcriptional regulatory protein DctD, receiver | 82.2 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 82.13 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 81.95 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 81.48 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 81.22 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 80.66 | |
| d1p6qa_ | 129 | CheY protein {Sinorhizobium meliloti, CheY2 [TaxId | 80.65 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 80.61 |
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=100.00 E-value=2e-57 Score=464.33 Aligned_cols=311 Identities=59% Similarity=0.992 Sum_probs=258.8
Q ss_pred cccceeEEEeeeEeecCCCCE---EEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCc
Q 045794 264 LKLAKRVIACLDVRANDKGDL---VVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDL 340 (578)
Q Consensus 264 ~~~~~riIp~iDl~~~~~g~~---v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~ 340 (578)
.||++||||+||++ +|+| +++||.+|+.+.+......+..|||+++|+.|+++||||||++||+|+.++...+.
T Consensus 5 ~~l~kRIIP~ldi~---~g~~~~~~l~Kg~~f~~~~~~~~~~~r~iGdP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~ 81 (323)
T d1jvna1 5 YGLTRRIIACLDVR---TNDQGDLVVTKGDQYDVREKSDGKGVRNLGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDT 81 (323)
T ss_dssp GGCCCCEEEEEEEE---ECTTSCEESSTTC---------------CHHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGC
T ss_pred CCCCccEEEEEEEe---CCccceEEEEcCcccceeecccccCccccCCHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCc
Confidence 68999999999999 7775 47899988754444445667789999999999999999999999999877655667
Q ss_pred hhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhcc--ccCCchHHHH
Q 045794 341 PMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTG--VKTGKSSLEQ 418 (578)
Q Consensus 341 ~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~--~~~~~~~l~~ 418 (578)
.++++|+++++++++||++|||||+++|+++.--++.|.|++|+++|||||+|||+++++ |+|+.+- .-.||.++++
T Consensus 82 ~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~GadKVvI~T~ai~~-p~~~~e~~~~~~n~~li~~ 160 (323)
T d1jvna1 82 PMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVYA-AEKYYELGNRGDGTSPIET 160 (323)
T ss_dssp HHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHHHHH-HHHHHHTTSCCCSCSHHHH
T ss_pred hHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHHHcCCCeEEechHHhhC-hHHHHHHHhhcccchhHHH
Confidence 889999999999999999999999999988887889999999999999999999999995 5665321 1147899999
Q ss_pred HHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe
Q 045794 419 ISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN 498 (578)
Q Consensus 419 ~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t 498 (578)
+++.||+|+|++|||++........+--.+.++.....++|+.+.||+|+++||++.+++++.+|++.++++|++||++|
T Consensus 161 i~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~gg~~~t~~~l~~~i~~~~~~G~GEIllt 240 (323)
T d1jvna1 161 ISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLN 240 (323)
T ss_dssp HHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHhCCceEEEEEEEEeccccccccccccccccccccCCCccceeEEEEEcCCeEecCchHHHHhhhhhccCcceeEEE
Confidence 99999999999999998642110000011223334445678888999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeecC
Q 045794 499 CIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578 (578)
Q Consensus 499 di~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~~ 578 (578)
++++|||++|+|+++++++.+.+++|||++||+++++|+.+++++.+++||++|++||++.+++.++|++|++++|+||+
T Consensus 241 dIdrDGt~~G~D~el~~~i~~~~~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~~~~~si~elK~~L~~~~i~vR~ 320 (323)
T d1jvna1 241 CIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLEHGLKVRM 320 (323)
T ss_dssp CGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHHHHTTCCCCC
T ss_pred eecccccccccchhHHHHHHHhCCCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHHHcCCCCHHHHHHHHHHCCCccCC
Confidence 99999999999999999999999999999999999999999887789999999999999999999999999999999995
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=100.00 E-value=1.5e-51 Score=411.33 Aligned_cols=251 Identities=45% Similarity=0.759 Sum_probs=232.9
Q ss_pred cceeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHH
Q 045794 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQV 345 (578)
Q Consensus 266 ~~~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~ 345 (578)
|.||||||||++ +|+||++||..|+ ..++.+||+++|+.|++.||+|||++||+++.. ++..+.++
T Consensus 2 ~~MrIIP~IDi~---~g~vv~~kg~~~~--------~~~~~~dP~~~a~~~~~~gadei~ivDl~~~~~---~~~~~~~~ 67 (252)
T d1h5ya_ 2 MALRIIPCLDID---GGAKVVVKGVNFQ--------GIREVGDPVEMAVRYEEEGADEIAILDITAAPE---GRATFIDS 67 (252)
T ss_dssp CBCEEEEEEEEC---GGGCEECTTCCCH--------HHHEEECHHHHHHHHHHTTCSCEEEEECCCCTT---THHHHHHH
T ss_pred CcEEEEEEEEEE---CCEEEEEEeecCc--------ceEECCCHHHHHHHHHHCCCCEEEEEecccccc---ccccHHHH
Confidence 679999999999 8999888887754 555678999999999999999999999999854 33678899
Q ss_pred HHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 346 LRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 346 i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
|+++++.+++|+++|||||+.+| +++++++||+||++||.++++ |++++++++.||+
T Consensus 68 i~~i~~~~~~pi~~gGGIr~~e~-----------~~~ll~~G~~kVii~s~~~~~------------~~~~~~~~~~~G~ 124 (252)
T d1h5ya_ 68 VKRVAEAVSIPVLVGGGVRSLED-----------ATTLFRAGADKVSVNTAAVRN------------PQLVALLAREFGS 124 (252)
T ss_dssp HHHHHHHCSSCEEEESSCCSHHH-----------HHHHHHHTCSEEEESHHHHHC------------THHHHHHHHHHCG
T ss_pred HHHHHhhcCCcceeecccchhhh-----------hhhHhhcCCcEEEecccccCC------------cchHHHHHHhcCC
Confidence 99999999999999999999976 999999999999999999995 4788999999999
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
|+|++|||++.+. + .|+++++||++.+++++.+++++++++|++++++||+++||+
T Consensus 125 q~iv~slD~~~~~--------------------~----~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG~ 180 (252)
T d1h5ya_ 125 QSTVVAIDAKWNG--------------------E----YYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGT 180 (252)
T ss_dssp GGEEEEEEEEECS--------------------S----SEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTT
T ss_pred CcEEEEEEEEEcC--------------------C----cEEEEEeCCeEcCCCCHHHHHHHHHhcCCCEEEEEeecccCc
Confidence 9999999998641 1 278999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeecC
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~~ 578 (578)
++|+|+++++++++.+++|+|++||+++.+|++++.+ .|++||++|++||++.++++++|++|+++||+||+
T Consensus 181 ~~G~d~~~~~~i~~~~~~pii~~GGv~~~~di~~l~~-~g~~gv~~gs~l~~~~~~~~~lk~~l~~~~i~vr~ 252 (252)
T d1h5ya_ 181 GLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAA-AGADAVLAASLFHFRVLSIAQVKRYLKERGVEVRI 252 (252)
T ss_dssp CSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTTSSCHHHHHHHHHHTTCBCCC
T ss_pred cCCcCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHH-CCCCEEEEhhHHHcCCCCHHHHHHHHHHcCCcccC
Confidence 9999999999999999999999999999999999985 89999999999999999999999999999999996
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.7e-50 Score=402.81 Aligned_cols=250 Identities=44% Similarity=0.731 Sum_probs=231.6
Q ss_pred ccceeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHH
Q 045794 265 KLAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQ 344 (578)
Q Consensus 265 ~~~~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~ 344 (578)
|+++||||+||++ +|+| |||..++ ..++.+||+++|+.|.+.|++|+|++||+++.++ +..|.+
T Consensus 1 Ml~kRIIP~Idi~---~g~~--Vk~~~~~--------~~~~~gdP~~~a~~~~~~g~dei~ivDld~~~~~---~~~~~~ 64 (253)
T d1thfd_ 1 MLAKRIIACLDVK---DGRV--VKGSNFE--------NLRDSGDPVELGKFYSEIGIDELVFLDITASVEK---RKTMLE 64 (253)
T ss_dssp CCCCEEEEEEEEE---TTEE--CCCSCCT--------TSSCTTCHHHHHHHHHHTTCCEEEEEESSCSSSH---HHHHHH
T ss_pred CCCCceEEEEEEE---CCEE--EECCCCc--------eeEECCCHHHHHHHHHHcCCCEEEEEeecccccC---cccHHH
Confidence 8899999999999 8985 5777754 5567899999999999999999999999997543 467899
Q ss_pred HHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCC
Q 045794 345 VLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG 424 (578)
Q Consensus 345 ~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (578)
+++++++++++|+|+|||||+.++ +++++++||+||++||.++++ |+++++++++||
T Consensus 65 ~i~~i~~~~~~pi~vgGGIr~~e~-----------i~~~l~~Ga~kviigs~~~~n------------~~~l~~~~~~~G 121 (253)
T d1thfd_ 65 LVEKVAEQIDIPFTVGGGIHDFET-----------ASELILRGADKVSINTAAVEN------------PSLITQIAQTFG 121 (253)
T ss_dssp HHHHHHTTCCSCEEEESSCCSHHH-----------HHHHHHTTCSEEEESHHHHHC------------THHHHHHHHHHC
T ss_pred HHHHHHhccCccceeecccccchh-----------hhhHHhcCCCEEEEChHHhhC------------hHHHHHHHHHcC
Confidence 999999999999999999999976 999999999999999999995 478899999999
Q ss_pred CCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 425 NQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 425 ~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
+|++++++|++.. ++ .|++.+++|++.+..++.++++++++.|++++++||+++||
T Consensus 122 ~~~iv~~id~~~~--------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG 177 (253)
T d1thfd_ 122 SQAVVVAIDAKRV--------------------DG----EFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDG 177 (253)
T ss_dssp GGGEEEEEEEEEE--------------------TT----EEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTT
T ss_pred CeeEEEeeeeccc--------------------CC----ceeeeeeecccccchhHHHHHHHHHhccCCEEEEEEecccC
Confidence 9999999998753 12 37899999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeecC
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~~ 578 (578)
|++|+|+++++++++.+++|+|++||+++++|+.++++ .|++||++|+|||++.+++++++++|+++||+||+
T Consensus 178 t~~G~d~~ll~~i~~~~~~pvi~~GGv~s~~di~~l~~-~g~~gvivgsal~~~~~~~~~~k~~l~~~~i~vr~ 250 (253)
T d1thfd_ 178 TKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-AGADAALAASVFHFREIDVRELKEYLKKHGVNVRL 250 (253)
T ss_dssp SCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTTCSCHHHHHHHHHHTTCCCCC
T ss_pred ccCCccccccccccccccceEEEecCCCCHHHHHHHHH-CCCCEEEEchHHHcCCCCHHHHHHHHHHCCCcEeC
Confidence 99999999999999999999999999999999999985 89999999999999999999999999999999995
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.1e-49 Score=395.88 Aligned_cols=249 Identities=44% Similarity=0.734 Sum_probs=229.1
Q ss_pred cceeEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHH
Q 045794 266 LAKRVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQV 345 (578)
Q Consensus 266 ~~~riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~ 345 (578)
|++||||+||++ +|+|| ||..|+ ..++.+||+++|+.|.++|++|+|++||+++..+ +..|.++
T Consensus 2 l~kRIIP~IDi~---~G~~V--k~~~~~--------~~~~~gdP~~~a~~~~~~g~dei~iiDl~~~~~~---~~~~~~~ 65 (251)
T d1ka9f_ 2 LAKRIVPCLDVH---AGRVV--KGVNFV--------NLRDAGDPVEAARAYDEAGADELVFLDISATHEE---RAILLDV 65 (251)
T ss_dssp CCBEEEEEEEEE---TTEET--TCCCSS--------CCSSTTCHHHHHHHHHHHTCSCEEEEECCSSTTC---HHHHHHH
T ss_pred CCCcEEEEEEEE---CCEEE--ECccCC--------ceEECCCHHHHHHHHHHcCCCEEEEEeccccccc---chhHHHH
Confidence 679999999999 89855 555543 4456799999999999999999999999998543 4678999
Q ss_pred HHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 346 LRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 346 i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
|+++++.+++|+|+|||||+.++ +++|+++||++|++||.++++ |++++++++.||+
T Consensus 66 i~~i~~~~~~pi~vgGGIrs~e~-----------~~~ll~~Ga~kVii~s~~~~n------------~~~i~~~~~~~G~ 122 (251)
T d1ka9f_ 66 VARVAERVFIPLTVGGGVRSLED-----------ARKLLLSGADKVSVNSAAVRR------------PELIRELADHFGA 122 (251)
T ss_dssp HHHHHTTCCSCEEEESSCCSHHH-----------HHHHHHHTCSEEEECHHHHHC------------THHHHHHHHHHCG
T ss_pred HHHHHhccCcchheeccccCHHH-----------HHHHHHcCCCEEEECchhhhC------------HHHHHHHHHhhcc
Confidence 99999999999999999999976 999999999999999999985 5888999999999
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
|++++++|++... ..|.+.++||++.+++++.++++.+++.|++++++||+++|||
T Consensus 123 q~iv~~id~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG~ 178 (251)
T d1ka9f_ 123 QAVVLAIDARWRG------------------------DFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGT 178 (251)
T ss_dssp GGEEEEEEEEEET------------------------TEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTT
T ss_pred cccccccchhhcc------------------------cceEEEeccceecCCccHHHHHHHHHhcCCCEEEEEeecccCc
Confidence 9999999987641 1368999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeecC
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 578 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~~ 578 (578)
++|+|+++++++.+.+++|+|++||+++.+|+.++++ .|++||++|+|||++.++++++|++|+++||+||+
T Consensus 179 ~~G~d~~l~~~i~~~~~~pii~~GGv~~~~dl~~l~~-~g~~gviig~al~~g~~~~~~~k~~l~~~~i~vr~ 250 (251)
T d1ka9f_ 179 KEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQ-AGAEAALAASVFHFGEIPIPKLKRYLAEKGVHVRL 250 (251)
T ss_dssp CSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTTSSCHHHHHHHHHHTTCCBCC
T ss_pred cCCcchhHHHHHHhhcceeEEEecCCCCHHHHHHHHH-CCCCEEEEhHHHHcCCCCHHHHHHHHHHCCCcccc
Confidence 9999999999999999999999999999999999986 89999999999999999999999999999999995
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.2e-45 Score=366.43 Aligned_cols=235 Identities=21% Similarity=0.288 Sum_probs=208.2
Q ss_pred eeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHH
Q 045794 268 KRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVL 346 (578)
Q Consensus 268 ~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i 346 (578)
|+|||||||+ +|+|| +++|+++. ..++.+||+++|+.|.+.|++++|++|||++..+ +..+..++
T Consensus 1 M~iIP~iDl~---~GkvVrl~~G~~~~--------~~~y~~dP~~~a~~~~~~g~~~l~ivDLda~~~~---~~~~~~~~ 66 (241)
T d1qo2a_ 1 MLVVPAIDLF---RGKVARMIKGRKEN--------TIFYEKDPVELVEKLIEEGFTLIHVVDLSNAIEN---SGENLPVL 66 (241)
T ss_dssp CEEEEEEEEE---TTEEEEEGGGCGGG--------EEEESSCHHHHHHHHHHTTCCCEEEEEHHHHHHC---CCTTHHHH
T ss_pred CEEEEEEEEE---CCEEEEEeCcccCC--------ceEECCCHHHHHHHHHHCCCCEEEEEeccccccc---CCcchhhe
Confidence 6899999999 99999 99999853 6678899999999999999999999999997543 35566766
Q ss_pred HHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCC
Q 045794 347 RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQ 426 (578)
Q Consensus 347 ~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 426 (578)
+.+++ ..+|+++|||||+.+| ++++++.||++|+++|+++++ |++++++++ |+ +
T Consensus 67 ~~~~~-~~~pl~~gGGI~s~~~-----------~~~~~~~Ga~kVvi~s~~~~~------------~~~~~~~~~-~~-~ 120 (241)
T d1qo2a_ 67 EKLSE-FAEHIQIGGGIRSLDY-----------AEKLRKLGYRRQIVSSKVLED------------PSFLKSLRE-ID-V 120 (241)
T ss_dssp HHGGG-GGGGEEEESSCCSHHH-----------HHHHHHTTCCEEEECHHHHHC------------TTHHHHHHT-TT-C
T ss_pred ehhcc-cccchhhhhhhhhhhh-----------hhhccccccceEecCcccccC------------chhhhhhcc-cc-c
Confidence 66655 5689999999999976 999999999999999999885 355566544 54 5
Q ss_pred eEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC
Q 045794 427 AVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG 506 (578)
Q Consensus 427 ~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~ 506 (578)
++++++|+++. ++.++||.+..++++.+++++++++|++++++|++++|||+
T Consensus 121 ~~~v~iD~~~~----------------------------~~~~~g~~~~~~~~~~~~~~~~~~~g~~eii~~dId~dGt~ 172 (241)
T d1qo2a_ 121 EPVFSLDTRGG----------------------------RVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTL 172 (241)
T ss_dssp EEEEEEEEETT----------------------------EECCTTCSSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHT
T ss_pred ceeeecccccc----------------------------cccccCcccceeeehhHHHHHhhccccceEEEeehhhhhhc
Confidence 78899998763 67789999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH-----hcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 507 KGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFR-----KTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 507 ~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~-----~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+|+|+++++++.+..++|+|++||+++.+|++++.+ ..|++||++|+|||+|.++++++|+|||
T Consensus 173 ~G~d~~l~~~i~~~~~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gvivG~al~~g~l~~~~~k~~l~ 241 (241)
T d1qo2a_ 173 QEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVMKRYAR 241 (241)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHHHHHHC
T ss_pred cccchhhhhhhhccCCceEEEECCCCCHHHHHHHHHccccccCCEeeEEEHHHHHCCCCCHHHHHHHhC
Confidence 999999999999989999999999999999999975 1358999999999999999999999985
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=9e-45 Score=359.73 Aligned_cols=234 Identities=18% Similarity=0.324 Sum_probs=197.2
Q ss_pred ceeEEEeeeEeecCCCCEE-EEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHH
Q 045794 267 AKRVIACLDVRANDKGDLV-VTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQV 345 (578)
Q Consensus 267 ~~riIp~iDl~~~~~g~~v-~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~ 345 (578)
+|||||||||+ +|+|| +++|++ . ..+..+||+++|+.|.+.||++||++|||++.++ ..|.++
T Consensus 2 kM~iIP~IDl~---~g~vV~~~~g~~-~--------~~~~~~dP~~~a~~~~~~ga~~l~i~DLd~~~~~----~~~~~~ 65 (239)
T d1vzwa1 2 KLELLPAVDVR---DGQAVRLVHGES-G--------TETSYGSPLEAALAWQRSGAEWLHLVDLDAAFGT----GDNRAL 65 (239)
T ss_dssp CCEEEEEEEEE---TTEEBC-----------------CCBCCCHHHHHHHHHHTTCSEEEEEEHHHHHTS----CCCHHH
T ss_pred CCEEEEEEEEE---CCeEEEEECccc-c--------CeeecCCHHHHHHHHHHcCCCEEEEEeecccccc----cchHHH
Confidence 58999999999 99988 888875 2 3345689999999999999999999999987542 456899
Q ss_pred HHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCC
Q 045794 346 LRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGN 425 (578)
Q Consensus 346 i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 425 (578)
++++++++++|+|+|||||+.+| ++++++.||++|++||.++++ |++++++++.||+
T Consensus 66 i~~i~~~~~~pi~vGGGIrs~~~-----------~~~ll~~Ga~kVvi~s~~~~~------------~~~~~~~~~~~g~ 122 (239)
T d1vzwa1 66 IAEVAQAMDIKVELSGGIRDDDT-----------LAAALATGCTRVNLGTAALET------------PEWVAKVIAEHGD 122 (239)
T ss_dssp HHHHHHHCSSEEEEESSCCSHHH-----------HHHHHHTTCSEEEECHHHHHC------------HHHHHHHHHHHGG
T ss_pred HHHHHhhcCcceEeecccccchh-----------hhhhhccccccchhhHHhhhc------------cccchhhhccCCc
Confidence 99999999999999999999976 999999999999999999985 4788999999995
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQ 505 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~ 505 (578)
++++++|.+.+ ++..+||.... .+..++++++.+.|+++||+|++++|||
T Consensus 123 -~~vv~~d~~~~----------------------------~~~~~g~~~~~-~~~~~~~~~~~~~g~~eii~tdi~~dGt 172 (239)
T d1vzwa1 123 -KIAVGLDVRGT----------------------------TLRGRGWTRDG-GDLYETLDRLNKEGCARYVVTDIAKDGT 172 (239)
T ss_dssp -GEEEEEEEETT----------------------------EECCSSSCCCC-CBHHHHHHHHHHTTCCCEEEEEC-----
T ss_pred -eeeeeecccee----------------------------eecCccceeec-cccchhhhhhhhccccEEEEEeecccce
Confidence 58899998875 45568887764 4789999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH--hcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 506 GKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFR--KTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 506 ~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~--~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
++|+|+++++++++.+++|+|++|||++.+|++++.+ ..|++||+||+|||+|.++++|+++.+
T Consensus 173 ~~G~d~~l~~~i~~~~~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al~~g~i~~~e~~~~~ 238 (239)
T d1vzwa1 173 LQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEALEAT 238 (239)
T ss_dssp --CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHHHHH
T ss_pred ecCCcchhhhhhhhccCceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHHHCCCCCHHHHHHhh
Confidence 9999999999999999999999999999999999853 249999999999999999999999875
|
| >d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=3e-29 Score=240.66 Aligned_cols=192 Identities=32% Similarity=0.582 Sum_probs=146.1
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCe-----EEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFG-----IKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~-----v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
|+|+|+|||++|+.++.++|+++|.. +...+ ..+...+|+|||||.|++.+.+..+.+.++.+.|+++++.++|
T Consensus 1 MKI~IiDyg~gN~~si~~al~~~g~~~~~~~~~~~~-~~~~~~~D~lIlPG~G~f~~~~~~l~~~~~~~~i~~~~~~~~P 79 (200)
T d1k9vf_ 1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVE-SPRNDLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERY 79 (200)
T ss_dssp CEEEEECSSSSCCHHHHHHHHHHTTTSSSCEEEEES-SSCSCCCSEEEECCCSCHHHHHHHHHHTTCHHHHHHHHHTTCE
T ss_pred CEEEEEeCCCcHHHHHHHHHHHhccccccceEEEeC-ChHhhccCeEEEcChHHHHHHHHhhhcccccccccccccccce
Confidence 57999999999999999999998843 33333 3445789999999988777777778777889999999999999
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCC
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~ 202 (578)
|||||+|||+|+..+.+++...+++..+.++.... ..+.++.+|........ .+....|+.|++.+.+.+
T Consensus 80 iLGIClG~QlL~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~hs~~~~~~~- 149 (200)
T d1k9vf_ 80 VVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLR---SRRLPHMGWNEVIFKDT------FPNGYYYFVHTYRAVCEE- 149 (200)
T ss_dssp EEEETHHHHTTEEEETTSTTCCCCCCEEEEEEECS---CSSCSEEEEEEEEESSS------SCCEEEEEEESEEEEECG-
T ss_pred EEEEecceeEEeeecccCccccccccccccccccc---ccccccccccccccccc------CCceEEEEeeeeeecccc-
Confidence 99999999999998766666667777776665533 34678888877654322 224566888988876433
Q ss_pred CCCcEEEEee-cCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 203 NKEWVSSTCN-YGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 203 ~~~~~~~~~~-~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
....+... .+..++.+++++|+||+|||||.+...|.+||++|+++.-
T Consensus 150 --~~~~~~~~~~~~~~~a~v~~~ni~GvQFHPEkS~~~G~~ll~nFl~~~~ 198 (200)
T d1k9vf_ 150 --EHVLGTTEYDGEIFPSAVRKGRILGFQFHPEKSSKIGRKLLEKVIECSL 198 (200)
T ss_dssp --GGEEEEEEETTEEEEEEEEETTEEEESSBGGGSHHHHHHHHHHHHHHHH
T ss_pred --cceEEEEEECCeEEEEEEEcCCEEEEeCCCcccchhHHHHHHHHHhhhh
Confidence 23333433 3445566788899999999999876678999999998753
|
| >d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=1.8e-27 Score=225.92 Aligned_cols=194 Identities=39% Similarity=0.664 Sum_probs=149.7
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
|+|+|+|||++|+.++.++|++.|+++++++.++++.++|++||||++.+...+..+...++...+......++|+||||
T Consensus 1 Mki~IiD~G~gN~~si~~~l~~lg~~~~i~~~~~~i~~~d~lIlpG~g~~~~~~~~~~~~~~~~~~~~~~~~g~pilGiC 80 (195)
T d1ka9h_ 1 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGIC 80 (195)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTTSCSSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECT
T ss_pred CEEEEEeCCCcHHHHHHHHHHHCCCeEEEECCHHHHHHHhhhhcCCCccccchhhhccccCCcccccccccccchhhhhh
Confidence 57999999999999999999999999999999999999999999999987777766665567778888889999999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeeeecCCCCCCcE
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRAMPSDDNKEWV 207 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v~~~~~~~~~~ 207 (578)
+|||+|+....+.....|+.+...++.... ....++.++........ .........+..|++.....+. ..
T Consensus 81 lG~qll~~~~~e~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~ 151 (195)
T d1ka9h_ 81 VGMQVLYEGSEEAPGVRGLGLVPGEVRRFR---AGRVPQMGWNALEFGGA---FAPLTGRHFYFANSYYGPLTPY---SL 151 (195)
T ss_dssp HHHHTTSSEETTSTTCCCCCSSSSEEEECC---SSSSSEEEEEECEECGG---GGGGTTCEEEEEESEECCCCTT---CC
T ss_pred hhhheeeeccccccccCCceeeeccccccc---ccccccccccccccccc---cccccccccccccceeeecccc---ce
Confidence 999999987666655667776666665432 23456666655443222 1122245667778876554332 23
Q ss_pred EEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhh
Q 045794 208 SSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHP 250 (578)
Q Consensus 208 ~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~ 250 (578)
.....++..++.+++++|+||+|||||.+...|.+|+++|+++
T Consensus 152 ~~~~~~~~~~~a~v~~~ni~GvQFHPEkS~~~G~~lL~nF~~~ 194 (195)
T d1ka9h_ 152 GKGEYEGTPFTALLAKENLLAPQFHPEKSGKAGLAFLALARRY 194 (195)
T ss_dssp EEEEETTEEEEEEEECSSEEEESSCTTSSHHHHHHHHHHHHHH
T ss_pred eeeecCCceEEEEEEcCCEEEEeCCcccccHhHHHHHHHHHHh
Confidence 3445556677888888999999999998877899999999986
|
| >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthase subunit A, GuaAA species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=4.1e-27 Score=225.11 Aligned_cols=180 Identities=19% Similarity=0.293 Sum_probs=135.2
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCc---cCCCCCCEEEECCCCCchHH-HHHHHhhcHHHHHHHHHhCCCCE
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP---EDILNANRLIFPGVGAFAAA-MDVLNKTGMAEALCAYIEKDRPF 123 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~---~dl~~~DGlILpGGg~~~~~-~~~l~~~~l~~~i~~~~~~g~PI 123 (578)
++|+|+||++++.+++.|+|+++|++++++++. .++.++||||||||.....+ ..+ +..+++.+.+.++|+
T Consensus 2 ~ki~iiD~g~~~~~~i~r~l~~lg~~~~i~~~d~~~~~~~~~dgiIl~Gg~~~~~~~~~~-----~~~l~~~~~~~~~Pi 76 (196)
T d2a9va1 2 LKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGAPNIDEELDK-----LGSVGKYIDDHNYPI 76 (196)
T ss_dssp CBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGGTTCSEEEEEEECSCGGGTGGG-----HHHHHHHHHHCCSCE
T ss_pred CEEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCCHHHHhcCCcEEEeccccccccccch-----hhhHHHHHhhcCceE
Confidence 359999999999999999999999998888643 45789999999987433222 112 234455556789999
Q ss_pred EEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCC
Q 045794 124 LGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDD 202 (578)
Q Consensus 124 lGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~ 202 (578)
||||+|||+|+.+ .| +++.+ ...++.++..+.+...++++.+++ .+.++++|++.+...+.
T Consensus 77 lGIC~G~Qll~~~-------~g-----g~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~~ 138 (196)
T d2a9va1 77 LGICVGAQFIALH-------FG-----ASVVK------AKHPEFGKTKVSVMHSENIFGGLPSEITVWENHNDEIINLPD 138 (196)
T ss_dssp EEETHHHHHHHHH-------TT-----CEEEE------EEEEEEEEEEEEESCCCGGGTTCCSEEEEEEEEEEEEESCCT
T ss_pred EEeehhhhhhhhc-------cc-----ccccc------ccccccccceEEEecCCccccCCCCceEEEecceeEEEeCCC
Confidence 9999999999995 23 34443 123456778888888889998887 68889999998875543
Q ss_pred CCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccC-cchHHHHHHHhhhccC
Q 045794 203 NKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSG-DVGLSVLRRFLHPKTN 253 (578)
Q Consensus 203 ~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~-~~~~~l~~~Fl~~~~~ 253 (578)
.+.......+..++++++ +|+||+|||||+.. .++..||++|++.+++
T Consensus 139 ---~~~v~a~~~~~~v~ai~~~~~~i~gvQfHPE~~~s~~G~~il~~F~~~~~~ 189 (196)
T d2a9va1 139 ---DFTLAASSATCQVQGFYHKTRPIYATQFHPEVEHTQYGRDIFRNFIGICAS 189 (196)
T ss_dssp ---TEEEEEECSSCSCSEEEESSSSEEEESSCTTSTTSTTHHHHHHHHHHHHHH
T ss_pred ---ccceeecccccchheEEECCCCEEEEEeCcccCCCccHHHHHHHHHHHHHH
Confidence 233333334556788884 48999999999754 4789999999998864
|
| >d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus subtilis [TaxId: 1423]
Probab=99.93 E-value=1.2e-25 Score=214.77 Aligned_cols=188 Identities=22% Similarity=0.335 Sum_probs=135.7
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEe
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGIC 127 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIC 127 (578)
++|+|+|++ |+..+++++|+++|+++++++.++++.++|+||||||.. ......+...++.+.|+++++.++|+||||
T Consensus 2 ~~igv~~~~-G~~~~~~~al~~~G~~~~~i~~~~~l~~~D~lIlPGG~~-~~~~~~~~~~~~~~~I~~~~~~g~pilGIC 79 (195)
T d2nv0a1 2 LTIGVLGLQ-GAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGES-TTMRRLIDTYQFMEPLREFAAQGKPMFGTC 79 (195)
T ss_dssp CEEEEECSS-SCCHHHHHHHHHTTCEEEEECSGGGGGGCSEEEECCSCH-HHHHHHHHHTTCHHHHHHHHHTTCCEEEET
T ss_pred cEEEEEecC-ChHHHHHHHHHHCCCcEEEECCHHHHhhCCEEEECCCCc-cHHHHHhhhchhcchhhhhhhhcceeeecc
Confidence 469999994 899999999999999999999999999999999999653 334444555578889999999999999999
Q ss_pred chHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCCCc
Q 045794 128 LGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNKEW 206 (578)
Q Consensus 128 lG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~~~ 206 (578)
+|||+|+.++.+ +...++|+.++.+.+... ..+... .+.. ..+.+++ ....+.+|++++...++.
T Consensus 80 ~G~Qll~~~~~g-~~~~~lg~~~~~~~~~~~--~~~~~~-~~~~-------~~~~~~~~~~~~~~~h~~~~~~~~~~--- 145 (195)
T d2nv0a1 80 AGLIILAKEIAG-SDNPHLGLLNVVVERNSF--GRQVDS-FEAD-------LTIKGLDEPFTGVFIRAPHILEAGEN--- 145 (195)
T ss_dssp HHHHHHSBCCC-----CCCCCSCEEEECCCS--CTTTSE-EEEE-------ECCTTCSSCEEEEEESCCEEEEECTT---
T ss_pred ccHHHHHhhhcc-cccccccccccccccccc--ccccee-eeee-------ecccCCCCCceEEEEeeeEEEecCCC---
Confidence 999999986533 334677888777654221 122222 2222 2233444 567788888887765542
Q ss_pred EEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccCC
Q 045794 207 VSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 207 ~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~ 254 (578)
....+.+++. +.++++++++|+|||||++.+. +++++|++.++..
T Consensus 146 ~~vla~~~~~-~~a~~~~ni~g~QFHPE~s~~~--~~~~~F~~~~~~~ 190 (195)
T d2nv0a1 146 VEVLSEHNGR-IVAAKQGQFLGCSFHPELTEDH--RVTQLFVEMVEEY 190 (195)
T ss_dssp CEEEEEETTE-EEEEEETTEEEESSCTTSSSCC--HHHHHHHHHHHHH
T ss_pred ceeeeeECCE-EEEEEECCEEEEEeCCcccCCc--HHHHHHHHHHHHH
Confidence 2223344444 4578889999999999998644 6889999887653
|
| >d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.7e-25 Score=218.26 Aligned_cols=179 Identities=17% Similarity=0.227 Sum_probs=127.9
Q ss_pred CCCCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC---C--CCCCEEEECCCC-CchHHHHHHHhhcHHHHHHHHH
Q 045794 44 TSSDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED---I--LNANRLIFPGVG-AFAAAMDVLNKTGMAEALCAYI 117 (578)
Q Consensus 44 ~~~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d---l--~~~DGlILpGGg-~~~~~~~~l~~~~l~~~i~~~~ 117 (578)
+..+.+|+|+|+| .+++++|.|+++|+.++++++... + .++|||||+||+ ++..... ..+.+++++
T Consensus 36 ~~~~~~i~~~D~G--~k~~ilr~l~~~~~~~~v~p~~~~~~~i~~~~pdgivlS~GPg~P~~~~~------~~~~~~~~~ 107 (228)
T d1a9xb2 36 DELPFHVVAYDFG--AKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDY------AITAIQKFL 107 (228)
T ss_dssp GGCCEEEEEEESS--CCHHHHHHHHHTTEEEEEEETTCCHHHHHTTCCSEEEECCCSBCSTTCHH------HHHHHHHHT
T ss_pred CCCcceEEEEeCC--CcHHhHhHHHhcCceEEEcCCCCCHHHHHhcCCCEEEEeCCCCccccchh------HHHHHHHHH
Confidence 3556789999976 778999999999999999887532 2 479999998875 4333211 245677777
Q ss_pred hCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCCCeEEEEEeeeee
Q 045794 118 EKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVGDHHVYFVHSYRA 197 (578)
Q Consensus 118 ~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~~~~~~~~H~~~v 197 (578)
+.++||||||+|||+|+.+ .| +++.+ ...++.|............+ ....++|++..
T Consensus 108 ~~~iPILGIClG~Qlia~~-------~G-----g~v~k------~~~~~~G~~~~~~~~~~~~~-----~~~~~~~~~~~ 164 (228)
T d1a9xb2 108 ETDIPVFGICLGHQLLALA-------SG-----AKTVK------MKFGHHGGNHPVKDVEKNVV-----MITAQNHGFAV 164 (228)
T ss_dssp TSCCCEEEETHHHHHHHHH-------TT-----CCEEE------EEEEEEEEEEEEEETTTTEE-----EEEEEEEEEEE
T ss_pred hCCCCEEEEEcChHHHHHH-------cC-----Cceee------ccccccccccccccccccee-----eeeccccccee
Confidence 8899999999999999995 24 56555 22345665554443333322 34567888776
Q ss_pred ecCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccC--cchHHHHHHHhhhccC
Q 045794 198 MPSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSG--DVGLSVLRRFLHPKTN 253 (578)
Q Consensus 198 ~~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~--~~~~~l~~~Fl~~~~~ 253 (578)
........+.......+++.++|+++ .++||+|||||... .++..||++|++.++.
T Consensus 165 ~~~~~~~~~~v~~~s~~d~~i~ai~h~~~~i~gVQFHPE~~~t~~dg~~l~~nFl~~i~~ 224 (228)
T d1a9xb2 165 DEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGNPEASPGPHDAAPLFDHFIELIEQ 224 (228)
T ss_dssp CSTTCCTTEEEEEEETTTCCEEEEEESSSSEEEESSCTTCSSSCSTTTHHHHHHHHHHHH
T ss_pred cccccccceEEEEEecCCCcEEEEEECCCCEEEEeCCCCCCCCcccHHHHHHHHHHHHHH
Confidence 54443334444445556788999995 48999999999864 3688999999998763
|
| >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.93 E-value=2.2e-26 Score=221.00 Aligned_cols=190 Identities=24% Similarity=0.373 Sum_probs=137.3
Q ss_pred CCcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEE
Q 045794 46 SDSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPEDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLG 125 (578)
Q Consensus 46 ~~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlG 125 (578)
..++|+|+|++ |++.++.++|++.|+++.+++.++++.++|+||||||. +...+..+...++.++|+++++.++|+||
T Consensus 5 ~~mkIgii~~~-Gn~~s~~~al~~~G~~~~~v~~~~~l~~~D~lIlPGG~-~~~~~~~l~~~~l~~~I~~~~~~gkPiLG 82 (202)
T d1q7ra_ 5 SNMKIGVLGLQ-GAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGE-STTMRRLIDRYGLMEPLKQFAAAGKPMFG 82 (202)
T ss_dssp CCCEEEEESCG-GGCHHHHHHHHHTTCEEEEECSGGGGTTCSEEEECCCC-HHHHHHHHHHTTCHHHHHHHHHTTCCEEE
T ss_pred cCCEEEEEECC-CCHHHHHHHHHHCCCcEEEECCHHHHhcCCEEEECCCC-cHHHHHHhhhhHHHHHHhhhccccceeee
Confidence 46889999994 79999999999999999999999999999999999954 45566677767888999999999999999
Q ss_pred EechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeeecCCCCC
Q 045794 126 ICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAMPSDDNK 204 (578)
Q Consensus 126 IClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~~~~~~~ 204 (578)
||+|||+|+..+.++ ...++|+.++++...... ....... ..+ .+.... ....+.+|+.++...+...
T Consensus 83 IClG~Qll~~~~~~~-~~~~lg~~~~~v~~~~~~--~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (202)
T d1q7ra_ 83 TCAGLILLAKRIVGY-DEPHLGLMDITVERNSFG--RQRESFE-AEL-------SIKGVGDGFVGVFIRAPHIVEAGDGV 151 (202)
T ss_dssp ETTHHHHHEEEEESS-CCCCCCCEEEEEECHHHH--CCCCCEE-EEE-------EETTTEEEEEEEESSCCEEEEECTTC
T ss_pred eehhhHHhhhhcccc-ceeecccccccccccccc--cccccce-ecc-------ccccccCCcceEEEeeccccccccce
Confidence 999999999876443 346788888877542211 0011111 111 111222 3455666776666554422
Q ss_pred CcEEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccCC
Q 045794 205 EWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 205 ~~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~~ 254 (578)
. . .+.+++ .+.+++++++||+|||||.+.+ .+++++|++.++..
T Consensus 152 ~-~--~a~~~~-~~~a~~~gni~G~QFHPEkS~~--~~il~~Fl~~~~~~ 195 (202)
T d1q7ra_ 152 D-V--LATYND-RIVAARQGQFLGCSFHPELTDD--HRLMQYFLNMVKEA 195 (202)
T ss_dssp E-E--EEEETT-EEEEEEETTEEEESSCGGGSSC--CHHHHHHHHHHHHH
T ss_pred e-E--EeecCC-EEEEEEeCCEEEEEeCCccCCC--hHHHHHHHHHHHHh
Confidence 2 2 233444 3567889999999999999763 47999999998754
|
| >d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Pyridoxine biosynthesis protein 2, Pdx2 species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.92 E-value=1.9e-25 Score=216.47 Aligned_cols=199 Identities=19% Similarity=0.198 Sum_probs=131.9
Q ss_pred CcEEEEEECCCCCHHHHHHHHHHCC---CeEEEeCCccCCCCCCEEEECCCCCchHHHHHH-HhhcHHHHHHHH-HhCCC
Q 045794 47 DSVVTLLDYGAGNVRSVRNAIRHLG---FGIKDVQTPEDILNANRLIFPGVGAFAAAMDVL-NKTGMAEALCAY-IEKDR 121 (578)
Q Consensus 47 ~~~I~vld~~~g~~~~i~~~L~~~G---v~v~~v~~~~dl~~~DGlILpGGg~~~~~~~~l-~~~~l~~~i~~~-~~~g~ 121 (578)
+++|+|+|+ .|+..+..++|+++| +++.+++.++++.++|+||||||+++...+..+ ....+.+.+.++ ...++
T Consensus 2 ~ikIGvl~l-~G~~~~~~~al~~lg~~~~~v~~~~~~~~l~~~D~lIlPGgg~~~~~~~~~~~~~~~~~~i~~~~~~~gk 80 (218)
T d2abwa1 2 EITIGVLSL-QGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKK 80 (218)
T ss_dssp CEEEEEECT-TSCCHHHHHHHHTTCCTTEEEEEECSHHHHHTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCC
T ss_pred CCEEEEEeC-CCcHHHHHHHHHHcCCCceEEEEeCCHHHHhhCCEEEEcCCCccHHHHHHHHHhccchHHHHHHHHHcCC
Confidence 578999999 489999999999998 577888999999999999999998765544332 222444545444 45799
Q ss_pred CEEEEechHHHHhhhcccCC------CcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEee
Q 045794 122 PFLGICLGLQLLFQSSEENG------PVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHS 194 (578)
Q Consensus 122 PIlGIClG~QlLa~a~~e~~------~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~ 194 (578)
||||||+|||||+..+.+.. ...+++..+.++..... .+.++..+..+........+.... ....|+.|+
T Consensus 81 PilGIC~G~QlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~h~ 157 (218)
T d2abwa1 81 PIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFY---GSQNDSFICSLNIISDSSAFKKDLTAACIRAPYI 157 (218)
T ss_dssp CEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC-------CCEEEEECEECCCCTTCCTTCEEEEESCCEE
T ss_pred eEEEecHHHHHHHHhccCCccccccccccccccccccceeccc---CCcccccccceeeccCCccccCcccceeEEeeEE
Confidence 99999999999998765432 12344555444433211 122334444555555555554333 345566777
Q ss_pred eeeecCCCCCCcEEEEeec--CCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhccC
Q 045794 195 YRAMPSDDNKEWVSSTCNY--GDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKTN 253 (578)
Q Consensus 195 ~~v~~~~~~~~~~~~~~~~--~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~~ 253 (578)
+...... ...+...... +..++++++++|++|+|||||++.+. +++++|+++++.
T Consensus 158 ~~~~~~~--~~~~a~~~~~~~g~~~i~av~~~ni~G~QFHPE~s~d~--r~~~~F~~~v~~ 214 (218)
T d2abwa1 158 REILSDE--VKVLATFSHESYGPNIIAAVEQNNCLGTVFHPELLPHT--AFQQYFYEKVKN 214 (218)
T ss_dssp EEECCTT--CEEEEEEEETTTEEEEEEEEEETTEEEESSCGGGSSCC--HHHHHHHHHHHH
T ss_pred EEeecCC--hhhheeeccccCCCeEEEEEecCCEEEEEcCCeecCCc--hHHHHHHHHHHh
Confidence 7654322 2222222222 23578899999999999999997644 689999998764
|
| >d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.92 E-value=5.9e-24 Score=202.61 Aligned_cols=180 Identities=21% Similarity=0.311 Sum_probs=125.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCeEEEeCCcc----CC--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCC
Q 045794 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPE----DI--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRP 122 (578)
Q Consensus 49 ~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~----dl--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~P 122 (578)
+|+|+|+.+++.+|++++|++.|+++++++.++ ++ .++|||+++||+....+.... .....+.++++.++|
T Consensus 3 ~~liiD~~dsft~Ni~~~l~~lG~~~~vi~~d~~~~~~i~~~~~~gvilsgGp~~~~~~~~~---~~~~~i~~~~~~~~P 79 (195)
T d1qdlb_ 3 LTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDI---GVSLDVIKYLGKRTP 79 (195)
T ss_dssp EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHH---TTHHHHHHHHTTTSC
T ss_pred EEEEEECCCchHHHHHHHHHhCCCeEEEEeCCCCCHHHHHhhCCCccccCCCCCcccccccc---ccchhhhhhhcCCCC
Confidence 489999888999999999999999998887532 22 368999999885433332222 223456667788999
Q ss_pred EEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeee-EEEEEc--cCCcccccCC-CeEEEEEeeeeee
Q 045794 123 FLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGW-NALQIT--KDSEILDDVG-DHHVYFVHSYRAM 198 (578)
Q Consensus 123 IlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~-~~i~~~--~~~~l~~~l~-~~~~~~~H~~~v~ 198 (578)
+||||+|||+|+.+ .| +++.+.. .++.|. ..+... ....++.+++ .+.++++|++.+.
T Consensus 80 iLGIClG~Qll~~~-------~G-----~~v~~~~------~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~h~~~~~ 141 (195)
T d1qdlb_ 80 ILGVCLGHQAIGYA-------FG-----AKIRRAR------KVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVD 141 (195)
T ss_dssp EEEETHHHHHHHHH-------TT-----CEEEEEE------EEEEEEEEEEEECCSSCCSTTTTCCSEEEEEEEEEEEEE
T ss_pred EEEeehhhhhhhhc-------cC-----CEEEeec------ccccccccccccccccccccccCCCccceeeecceeeee
Confidence 99999999999995 34 4554421 122332 222222 2345777776 6788999998876
Q ss_pred cCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCcccC-cchHHHHHHHhhhc
Q 045794 199 PSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKSG-DVGLSVLRRFLHPK 251 (578)
Q Consensus 199 ~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~~-~~~~~l~~~Fl~~~ 251 (578)
..+. ..........+..++++++ +|+||+|||||++. ..+..|++||++.+
T Consensus 142 ~~~~--~~~~~~~~~~~~~i~ai~~~~~~i~GvQFHPE~~~s~~G~~il~nFl~~i 195 (195)
T d1qdlb_ 142 EVHR--PLIVDAISAEDNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFLNRV 195 (195)
T ss_dssp CCCT--TEEEEEEESSSCCEEEEEESSSSEEEESSBTTSTTCTTHHHHHHHHHHHC
T ss_pred cccc--CcccceeccCCCcEEEEEECCCCEEEEEcCCCCCCCcchHHHHHHHHhhC
Confidence 5443 2223333445567899984 58999999999865 57899999999864
|
| >d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthetase species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.8e-24 Score=207.79 Aligned_cols=179 Identities=20% Similarity=0.331 Sum_probs=124.2
Q ss_pred CcEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC-----CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCC
Q 045794 47 DSVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED-----ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDR 121 (578)
Q Consensus 47 ~~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d-----l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~ 121 (578)
+.+|+|+|||+++..++.|+|+++|+++++++.... ...+||++++||+....+.. ....+...++.++
T Consensus 5 ~~kI~IiD~G~~~~~~I~r~lr~lg~~~~I~~~d~~~~~~~~~~~~giils~gp~~~~~~~------~~~~~~~~~~~~~ 78 (205)
T d1gpma2 5 KHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEEN------SPRAPQYVFEAGV 78 (205)
T ss_dssp SSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESCCCHHHHHHHCCSEEEECCCSSCTTSTT------CCCCCGGGGTSSS
T ss_pred cCeEEEEECCchHHHHHHHHHHHCCCEEEEECCCCCHHHHhhcCCCeEEecCCCCccchhh------hhhHHHHHHhCCC
Confidence 457999999999999999999999999988876432 24689999988753322211 1123445567899
Q ss_pred CEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC---------CeEEEEE
Q 045794 122 PFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG---------DHHVYFV 192 (578)
Q Consensus 122 PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~---------~~~~~~~ 192 (578)
|+||||+|||+|+.+ .| +++.+ ...+++||..+.......++.+++ ...++.+
T Consensus 79 PiLGIClG~Qlla~~-------~G-----g~v~~------~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (205)
T d1gpma2 79 PVFGVCYGMQTMAMQ-------LG-----GHVEA------SNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMS 140 (205)
T ss_dssp CEEEETHHHHHHHHH-------HT-----CEEEC------CSSCEEEEEEEEECSCCTTTTTCCSEECTTSCEEEEEEEE
T ss_pred CEEEeccchhhhhhh-------cC-----Ccccc------ccccccCcceeccccccccccccccccccCCccceeeecc
Confidence 999999999999995 23 56654 345688998888776665554432 2356777
Q ss_pred eeeeeecCCCCCCcEEEEeecCCceEEEEE--eCCEEEEeeCCcccC-cchHHHHHHHhhhcc
Q 045794 193 HSYRAMPSDDNKEWVSSTCNYGDNFIASVR--RGNVHAVQFHPEKSG-DVGLSVLRRFLHPKT 252 (578)
Q Consensus 193 H~~~v~~~~~~~~~~~~~~~~~d~~iegi~--~~~i~gvQFHPE~~~-~~~~~l~~~Fl~~~~ 252 (578)
|++.+...+.. ..... ...+..++++. ++|+||+|||||++. .++..||+||++.+.
T Consensus 141 h~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~ni~gvQFHPE~s~s~~G~~il~nFl~~i~ 200 (205)
T d1gpma2 141 HGDKVTAIPSD--FITVA-STESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDIC 200 (205)
T ss_dssp ECSEEEECCTT--CEEEE-ECSSCSCSEEEETTTTEEEESBCTTSTTSTTHHHHHHHHHHTTS
T ss_pred ccccccccccc--ceeee-ccCCCceEEEEeCCCCEEEEEeecccCCCccHHHHHHHHHHHHh
Confidence 77766554432 22222 22233334444 569999999999975 588999999996543
|
| >d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Serratia marcescens [TaxId: 615]
Probab=99.90 E-value=2.5e-23 Score=197.98 Aligned_cols=177 Identities=19% Similarity=0.262 Sum_probs=129.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCeEEEeCCccC-------C--CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhC
Q 045794 49 VVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTPED-------I--LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEK 119 (578)
Q Consensus 49 ~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~~d-------l--~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~ 119 (578)
.|+|+|..+++.+++++.|+++|+++++++.... + .++|+|+++||.....+. .....+++.++.
T Consensus 2 niliiD~~DSFt~ni~~~l~~lG~~~~v~~~~~~~~~~~~~l~~~~~~~iils~Gpg~~~~~------~~~~~i~~~l~~ 75 (192)
T d1i7qb_ 2 DILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEA------GCMPELLQRLRG 75 (192)
T ss_dssp EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCHHHHHHHHHHCSSEEEEECCCSSCGGGS------TTHHHHHHHHBT
T ss_pred cEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCcccccHHHHHhcCCCeEEecCcccccccc------ccchhhHHhhhc
Confidence 3889998889999999999999999998865321 2 368999997764322221 112346677788
Q ss_pred CCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeeeeee
Q 045794 120 DRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSYRAM 198 (578)
Q Consensus 120 g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~~v~ 198 (578)
++|+||||+|||+|+.+ .| +++.+ .+.++.|+.........+++...+ ...++.+|++.+.
T Consensus 76 ~iPiLGIClG~Q~la~~-------~G-----g~v~~------~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~h~~~~~ 137 (192)
T d1i7qb_ 76 QLPIIGICLGHQAIVEA-------YG-----GQVGQ------AGEILHGKASAIAHDGEGMFAGMANPLPVARYHSLVGS 137 (192)
T ss_dssp TBCEEEETHHHHHHHHH-------TT-----CEEEE------EEEEEEEEEEEEEECCCGGGTTCCSSEEEEEEEEEEEE
T ss_pred CccEEeeeHHHHHHHHH-------CC-----CeEEE------CCcccccceEEEeecCCCceeeccccceEEeecccccc
Confidence 99999999999999995 34 56654 234567777766677778887777 7788999999887
Q ss_pred cCCCCCCcEEEEeecCCceEEEEEe--CCEEEEeeCCccc-CcchHHHHHHHhhhccC
Q 045794 199 PSDDNKEWVSSTCNYGDNFIASVRR--GNVHAVQFHPEKS-GDVGLSVLRRFLHPKTN 253 (578)
Q Consensus 199 ~~~~~~~~~~~~~~~~d~~iegi~~--~~i~gvQFHPE~~-~~~~~~l~~~Fl~~~~~ 253 (578)
..+. . +...+.. +..++++++ +++||+|||||.. +.++..|+++|+.+..|
T Consensus 138 ~~~~--~-~~~~a~~-~~~i~ai~~~~~~i~GvQFHPEs~~t~~G~~il~nFl~~~~~ 191 (192)
T d1i7qb_ 138 NIPA--D-LTVNARF-GEMVMAVRDDRRRVCGFQFHPESILTTHGARLLEQTLAWALA 191 (192)
T ss_dssp SCCT--T-SEEEEEE-TTEEEEEEETTTTEEEESSCTTSTTSTTHHHHHHHHHHHHHC
T ss_pred cccc--e-eeeecCC-CCeeEEEEECCCCEEEEEeCCCcCCCCChHHHHHHHHHHHhc
Confidence 6543 2 2223333 356899984 5899999999975 34789999999987644
|
| >d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein TM1158 species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=1.4e-22 Score=198.03 Aligned_cols=179 Identities=20% Similarity=0.251 Sum_probs=129.6
Q ss_pred CcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCCc------cCCCCCCEEEECCCCCchHH---HHHHHhhcHHHHHHHH
Q 045794 47 DSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQTP------EDILNANRLIFPGVGAFAAA---MDVLNKTGMAEALCAY 116 (578)
Q Consensus 47 ~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~~------~dl~~~DGlILpGGg~~~~~---~~~l~~~~l~~~i~~~ 116 (578)
.++|+|+... ......+.++|+++|+++.+++.. +++.+|||||++||+....+ ..|+. .+.++|+++
T Consensus 3 ~mrvli~qh~~~e~~G~~~~~l~~~g~~~~~~~~~~~~~~p~~l~~~d~iii~Ggp~~~~d~~~~~~~~--~~~~~i~~~ 80 (230)
T d1o1ya_ 3 HVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLK--YEFQLIEEI 80 (230)
T ss_dssp CCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCGGGCSEEEECCCSCCTTCTTTCTHHH--HHHHHHHHH
T ss_pred ceEEEEEECCCCCCcHHHHHHHHHCCCEEEEEECCCCCcCCcchhhCCEEEEcCCCcccccchhhhhhH--HHHHHHHHH
Confidence 4778888322 223447889999999999988643 34678999999998532221 23555 467889999
Q ss_pred HhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCCCCCcceeeeEEEEEccCCcccccCC-CeEEEEEeee
Q 045794 117 IEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSNGFRVPQIGWNALQITKDSEILDDVG-DHHVYFVHSY 195 (578)
Q Consensus 117 ~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~~~~~~~~G~~~i~~~~~~~l~~~l~-~~~~~~~H~~ 195 (578)
++.++|+||||+|||+|+.+ .| +++.+ ....++.|+..+....+++++.+++ .+.++++|++
T Consensus 81 ~~~~~PilGIC~G~Qlla~a-------lG-----g~V~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~d 143 (230)
T d1o1ya_ 81 LKKEIPFLGICLGSQMLAKV-------LG-----ASVYR-----GKNGEEIGWYFVEKVSDNKFFREFPDRLRVFQWHGD 143 (230)
T ss_dssp HHHTCCEEEETHHHHHHHHH-------TT-----CCEEE-----CTTCCEEEEEEEEECCCCGGGTTSCSEEEEEEEESE
T ss_pred HHhcceEEEeecCHHHHHHH-------hc-----ccccc-----ccccccccccccccccchhhhccCCccceEEEecce
Confidence 99999999999999999995 23 56655 1234678888888888899999888 7789999987
Q ss_pred eeecCCCCCCcEEEEeecCCceEEEEEeCCEEEEeeCCcccCcchHHHHHHHhhhcc
Q 045794 196 RAMPSDDNKEWVSSTCNYGDNFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLHPKT 252 (578)
Q Consensus 196 ~v~~~~~~~~~~~~~~~~~d~~iegi~~~~i~gvQFHPE~~~~~~~~l~~~Fl~~~~ 252 (578)
... .|... ..+++.. ...+++++.+++||+|||||++. .++++|++..+
T Consensus 144 ~~~-lp~~~-~~la~s~--~~~~qa~~~~~~~g~QfHPE~~~----~~~~~~i~~~~ 192 (230)
T d1o1ya_ 144 TFD-LPRRA-TRVFTSE--KYENQGFVYGKAVGLQFHIEVGA----RTMKRWIEAYK 192 (230)
T ss_dssp EEC-CCTTC-EEEEECS--SCSCSEEEETTEEEESSBSSCCH----HHHHHHHHHTH
T ss_pred eee-eccch-hhhhhhc--CCceEEEEecCEeEEEeCCCCCH----HHHHHHHHHhH
Confidence 443 44332 2333322 22367888899999999999954 67888876554
|
| >d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=3.5e-18 Score=165.95 Aligned_cols=195 Identities=19% Similarity=0.282 Sum_probs=119.2
Q ss_pred cEEEEEECC---CCCHHHHHHHHHHCC------CeEEEeCC-------ccCCCCCCEEEECCCCCchHHHHHHHhhcHHH
Q 045794 48 SVVTLLDYG---AGNVRSVRNAIRHLG------FGIKDVQT-------PEDILNANRLIFPGVGAFAAAMDVLNKTGMAE 111 (578)
Q Consensus 48 ~~I~vld~~---~g~~~~i~~~L~~~G------v~v~~v~~-------~~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~ 111 (578)
.+|+++.=. .....++.++|..+| +++.+++. .+.|.++|||++|||-... .. .+...
T Consensus 4 v~Ia~vGKY~~l~DaY~Sv~eaL~ha~~~~~~~v~i~wi~s~~~e~~~~~~L~~~dGIlvPGGFG~R----G~--eGki~ 77 (258)
T d1s1ma1 4 VTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYR----GV--EGMIT 77 (258)
T ss_dssp EEEEEEESSCSSGGGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSST----TH--HHHHH
T ss_pred eEEEEEeCcCCCchhHHhHHHHHHHhHHhcCCeEEEEEEccccccccccccccccccEEeecccCcC----CH--HHHHH
Confidence 458887411 123457778887765 35556643 2348899999999983221 11 25677
Q ss_pred HHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCC--------------------------CCCCcc
Q 045794 112 ALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSS--------------------------NGFRVP 165 (578)
Q Consensus 112 ~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~--------------------------~~~~~~ 165 (578)
.++.+.++++|+||||+|||+++..+..+ -+|+-++..+.|.++ ......
T Consensus 78 ai~yARen~iPfLGIClGmQ~avIE~ARn----vlg~~~A~S~Ef~p~t~~pvi~~~~~~~~~~~~~~~~~~~~~~GgTm 153 (258)
T d1s1ma1 78 TARFARENNIPYLGICLGMQVALIDYARH----VANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTM 153 (258)
T ss_dssp HHHHHHHTTCCEEEETHHHHHHHHHHHHH----HHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CC
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHHHH----hCCCCCCcCCCCCCCCCCCEEEecccccccCCceeEeecccCccccc
Confidence 89999999999999999999999874311 111211221111110 001224
Q ss_pred eeeeEEEEEccCCcccccCCCeEEEEE--eeeeeecC--C--CCCCcEEEEeecCC-ceEEEEE---eCCEEEEeeCCcc
Q 045794 166 QIGWNALQITKDSEILDDVGDHHVYFV--HSYRAMPS--D--DNKEWVSSTCNYGD-NFIASVR---RGNVHAVQFHPEK 235 (578)
Q Consensus 166 ~~G~~~i~~~~~~~l~~~l~~~~~~~~--H~~~v~~~--~--~~~~~~~~~~~~~d-~~iegi~---~~~i~gvQFHPE~ 235 (578)
.+|.+++.+.+++...+.+....+.+. |+|.+.+. + ....+ ..+....+ +.+|+++ +.+++|+|||||+
T Consensus 154 rlG~~~~~l~~~s~~~~~Y~~~~i~ERHRHRYevN~~y~~~le~~gl-~~sG~s~dg~~vEiiEl~~HPffvg~QfHPEf 232 (258)
T d1s1ma1 154 RLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGL-RVAGRSGDDQLVEIIEVPNHPWFVACQFHPEF 232 (258)
T ss_dssp EEEEEEEEECTTCHHHHHTTSSEEEEEEEECCEECHHHHHHHHHTTC-EEEEECSSSCCEEEEECTTSSSEEEESSCGGG
T ss_pred cCcccchhhhhHHHHHHhcCcceehhhhhcchhhhhhhhhhhhcCCc-eeeeecCCCCeEEEEEeCCCCeEEEecCCccc
Confidence 567788888777766655554445554 44444321 0 12233 34444444 4689999 4579999999999
Q ss_pred cCc--chHHHHHHHhhhccC
Q 045794 236 SGD--VGLSVLRRFLHPKTN 253 (578)
Q Consensus 236 ~~~--~~~~l~~~Fl~~~~~ 253 (578)
.+. .-..+|..|+.++..
T Consensus 233 ~Srp~~p~PLF~~Fi~Aa~~ 252 (258)
T d1s1ma1 233 TSTPRDGHPLFAGFVKAASE 252 (258)
T ss_dssp TCCTTTCCHHHHHHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHH
Confidence 764 234799999987653
|
| >d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=1.4e-17 Score=161.10 Aligned_cols=193 Identities=20% Similarity=0.252 Sum_probs=117.2
Q ss_pred cEEEEEE----CCCCCHHHHHHHHHHCC------CeEEEeCCc--------cCCCCCCEEEECCCCCchHHHHHHHhhcH
Q 045794 48 SVVTLLD----YGAGNVRSVRNAIRHLG------FGIKDVQTP--------EDILNANRLIFPGVGAFAAAMDVLNKTGM 109 (578)
Q Consensus 48 ~~I~vld----~~~g~~~~i~~~L~~~G------v~v~~v~~~--------~dl~~~DGlILpGGg~~~~~~~~l~~~~l 109 (578)
.+|+++. +.+ ...++.++|..+| +++.+++.. +.|.++|||++|||.... .++ +.
T Consensus 4 v~IaiVGKY~~l~D-aY~Si~eAL~hA~~~~~~~v~i~wi~s~~l~~~~~~~~L~~~dGIlvPGGFG~r----G~e--Gk 76 (250)
T d1vcoa1 4 VKIAIAGKYVKMPD-AYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGVR----GIE--GK 76 (250)
T ss_dssp EEEEEEESCC---C-TTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSST----THH--HH
T ss_pred EEEEEEeCCCCCch-HHHHHHHHHHHhHHhcCCeEEEEEEcchhcchhhHHHHHhcCCeEEecCCCCcc----chH--HH
Confidence 4577874 222 3357777877665 455666542 227899999999984221 111 55
Q ss_pred HHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCC----------------CCCCcceeeeEEEE
Q 045794 110 AEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSS----------------NGFRVPQIGWNALQ 173 (578)
Q Consensus 110 ~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~----------------~~~~~~~~G~~~i~ 173 (578)
...++.+.++++|+||||+|||++...+..+ .+|+-++..+.|.++ .......+|.+++.
T Consensus 77 i~ai~yARen~iPfLGIClGmQ~avIEfARn----vlgl~~A~s~Ef~~~~~~pvi~~~~e~~~~~~~ggtmRLG~~~~~ 152 (250)
T d1vcoa1 77 VRAAQYARERKIPYLGICLGLQIAVIEFARN----VAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMR 152 (250)
T ss_dssp HHHHHHHHHTTCCEEEETHHHHHHHHHHHHH----TSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEE
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHHHHHH----HHHhhcccccccCCCCCCeEEEeeccceeccccCccccccceeee
Confidence 6788999999999999999999999875321 122222222221111 01123456778888
Q ss_pred EccCCcccccCCCeEEEEE--eeeeeecCC----CCCCcEEEEeecC------CceEEEEE---eCCEEEEeeCCcccCc
Q 045794 174 ITKDSEILDDVGDHHVYFV--HSYRAMPSD----DNKEWVSSTCNYG------DNFIASVR---RGNVHAVQFHPEKSGD 238 (578)
Q Consensus 174 ~~~~~~l~~~l~~~~~~~~--H~~~v~~~~----~~~~~~~~~~~~~------d~~iegi~---~~~i~gvQFHPE~~~~ 238 (578)
+.+++.+.+.+....+.+. |+|.+.+.- .... +..+.... .+.+|+++ +.+++|+|||||+.+.
T Consensus 153 l~~~S~~~~~Y~~~~i~ERhRHRYevN~~y~~~le~~g-l~~sg~~~d~~~~~~~lvEiiEl~~HPffvgvQfHPEf~Sr 231 (250)
T d1vcoa1 153 IKPGTLLHRLYGKEEVLERHRHRYEVNPLYVDGLERAG-LVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSR 231 (250)
T ss_dssp ECTTSHHHHHHCCSEEEEEEEESEEECHHHHHHHHHHT-EEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCB
T ss_pred ecCCcHHHhhccccEEeehcccceeechhhhHHHHhcc-ccccccCcccccCCCCeEEEEECCCCCcEEEecCCccccCC
Confidence 8877766655554455554 444443210 1112 33333222 25788888 4578899999999764
Q ss_pred --chHHHHHHHhhhcc
Q 045794 239 --VGLSVLRRFLHPKT 252 (578)
Q Consensus 239 --~~~~l~~~Fl~~~~ 252 (578)
.-..+|..|+.++-
T Consensus 232 p~~phPLF~~fi~Aal 247 (250)
T d1vcoa1 232 PMRPSPPFVGFVEAAL 247 (250)
T ss_dssp TTBCCHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHH
Confidence 44689999998753
|
| >d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: gamma-glutamyl hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=4.1e-17 Score=164.14 Aligned_cols=91 Identities=16% Similarity=0.131 Sum_probs=60.1
Q ss_pred CCcEEEEEECCC-----------CCHHHHHHHHHHCCCeEEEeCCccC-------CCCCCEEEECCCCCchHHHHHHH-h
Q 045794 46 SDSVVTLLDYGA-----------GNVRSVRNAIRHLGFGIKDVQTPED-------ILNANRLIFPGVGAFAAAMDVLN-K 106 (578)
Q Consensus 46 ~~~~I~vld~~~-----------g~~~~i~~~L~~~Gv~v~~v~~~~d-------l~~~DGlILpGGg~~~~~~~~l~-~ 106 (578)
.+|.|+|+.-.+ ....+++++++++|+++..++...+ +..+||||+|||+.........+ .
T Consensus 2 ~kPiIGI~~~~~~~~~~~~~~~~yi~~sYvk~ie~aGa~vvpi~~~~~~~~~~~~l~~idGillpGG~~~~~~~~~~~~~ 81 (288)
T d1l9xa_ 2 KKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVA 81 (288)
T ss_dssp CCCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHH
T ss_pred CCCEEEEeCCcccCcccccchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHhhcCCeEecCCCCCcccccccccc
Confidence 468888873111 1234789999999999988876532 56799999999964332222221 1
Q ss_pred hcHHHHH--HHHHhCCCCEEEEechHHHHhhh
Q 045794 107 TGMAEAL--CAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 107 ~~l~~~i--~~~~~~g~PIlGIClG~QlLa~a 136 (578)
+.+.+.. +.+.+.++||||||+|||+|+.+
T Consensus 82 r~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~ 113 (288)
T d1l9xa_ 82 KIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL 113 (288)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhCCCCeEEEcHHHHHHHHH
Confidence 2233332 33334568999999999999995
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=99.25 E-value=1.4e-11 Score=123.91 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
...++++.+++.|++.|++|.+++...+.|+ ||+.++++++ ++|||++|||.+.+|+.++++.+||||||+|++++.
T Consensus 137 ~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~~~--~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~ 214 (305)
T d1vhna_ 137 EVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIG 214 (305)
T ss_dssp CHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTT
T ss_pred hhhHHHHHHHHhCCcEEEechhhhhhccccchhhhHHHhhhh--hhhhhcccccccHHHHHHHHHhcCCCeEehhHHHHH
Confidence 5689999999999999999999999999997 9999988865 699999999999999999998899999999999999
Q ss_pred CCCCHHHHHHHHHhC
Q 045794 558 KEVPIQSVKEHLYKE 572 (578)
Q Consensus 558 ~~~~~~~~~~~l~~~ 572 (578)
++|.|.++++++...
T Consensus 215 nP~if~~i~~~l~~~ 229 (305)
T d1vhna_ 215 RPWIFKQIKDFLRSG 229 (305)
T ss_dssp CTTHHHHHHHHHHHS
T ss_pred hhhHhhhhhhhhcCC
Confidence 999999999988764
|
| >d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: HTS-like domain: Homoserine O-succinyltransferase HTS (MetA) species: Bacillus cereus [TaxId: 1396]
Probab=99.23 E-value=4.9e-11 Score=118.09 Aligned_cols=148 Identities=14% Similarity=0.082 Sum_probs=89.0
Q ss_pred CCCCEEEECCCCCch---HHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhhcccCCCcCCCcccCceeeeecCCC
Q 045794 84 LNANRLIFPGVGAFA---AAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQSSEENGPVNGLGLIPGVVGRFDSSN 160 (578)
Q Consensus 84 ~~~DGlILpGGg~~~---~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a~~e~~~~~Glgl~~~~v~~~~~~~ 160 (578)
.++||+||+|++... .+..++. .+.+.++++.+..+|+||||+|+|+++.++ | |.+.+.
T Consensus 82 ~~fDglIITGap~~~~~fedv~y~~--eL~eii~~a~~~~~~~lgiCwGaQa~~~~l-------g-----Gi~k~~---- 143 (281)
T d2ghra1 82 EKFDGLIITGAPVETLSFEEVDYWE--ELKRIMEYSKTNVTSTLHICWGAQAGLYHH-------Y-----GVQKYP---- 143 (281)
T ss_dssp CCEEEEEECCCSCTTSCGGGSTTHH--HHHHHHHHHHHHEEEEEEETHHHHHHHHHH-------H-----CCCCEE----
T ss_pred ccCCEEEEeCCCCCcccccccccHH--HHHHHHHHHHhcCCCeEEEcHHHHHHHHHh-------C-----CCcccc----
Confidence 469999999985322 2334554 467788888888999999999999999962 1 222110
Q ss_pred CCCcceeeeEEEEE-ccCCcccccCC-CeEEEEEeeeeeec--CCCCCCcEEEEeecCCceEEEEE--eCCEEEEeeCCc
Q 045794 161 GFRVPQIGWNALQI-TKDSEILDDVG-DHHVYFVHSYRAMP--SDDNKEWVSSTCNYGDNFIASVR--RGNVHAVQFHPE 234 (578)
Q Consensus 161 ~~~~~~~G~~~i~~-~~~~~l~~~l~-~~~~~~~H~~~v~~--~~~~~~~~~~~~~~~d~~iegi~--~~~i~gvQFHPE 234 (578)
.+....|..+..+ ...++++.+++ .+.+.+.|...+.. +...+........ +...+.++. .++++++|+|||
T Consensus 144 -~~~k~~Gv~~~~~~~~~~pL~~g~~d~f~~p~Sr~~~~~~d~v~~~p~l~vLa~S-~~~g~~~~~~~~~~~~~iQgHPE 221 (281)
T d2ghra1 144 -LKEKMFGVFEHEVREQHVKLLQGFDELFFAPHSRHTEVRESDIREVKELTLLANS-EEAGVHLVIGQEGRQVFALGHSE 221 (281)
T ss_dssp -EEEEEEEEEEEEECCSSCGGGTTCCSEEEEEEEEEEECCHHHHHTCTTEEEEEEE-TTTEEEEEEEGGGTEEEECSCTT
T ss_pred -CCCceEEEEEEeeccCCChhccCCcchhheeeeecccCCHHHHhhCCCceEEeec-CCcccEEEEECCCCEEEEeCCCC
Confidence 1223456554443 45678988887 56666666443331 1122222222222 222233444 458999999999
Q ss_pred ccCcchHHHHHHHhhhccCC
Q 045794 235 KSGDVGLSVLRRFLHPKTNI 254 (578)
Q Consensus 235 ~~~~~~~~l~~~Fl~~~~~~ 254 (578)
++.. .|.+.+.+-+...
T Consensus 222 Yd~~---tL~~EY~RD~~~g 238 (281)
T d2ghra1 222 YSCD---TLKQEYERDRDKG 238 (281)
T ss_dssp CCTT---HHHHHHHHHHHTT
T ss_pred cchh---HHHHHHHHHHHcC
Confidence 9763 4566666555443
|
| >d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: FGAM synthase PurL, amidotransferase domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.13 E-value=1.3e-09 Score=106.43 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=68.6
Q ss_pred CCCCcEEEEEECC-CCCHHHHHHHHHHCCCeEEEeCC------ccCCCCCCEEEECCCCCchHHHH----H----HHhhc
Q 045794 44 TSSDSVVTLLDYG-AGNVRSVRNAIRHLGFGIKDVQT------PEDILNANRLIFPGVGAFAAAMD----V----LNKTG 108 (578)
Q Consensus 44 ~~~~~~I~vld~~-~g~~~~i~~~L~~~Gv~v~~v~~------~~dl~~~DGlILpGGg~~~~~~~----~----l~~~~ 108 (578)
.+.+|+|+||-++ +..-.+...+|+.+|++++.+.. ..+|.++|+|++|||-++.+.+. + +....
T Consensus 3 ~~~kpkvaVl~~pGtNcd~e~~~Af~~aG~~~~~v~~~dl~~~~~~L~~~~~lvipGGFSygD~l~ag~~~a~~~~~~~~ 82 (262)
T d1t3ta2 3 TGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHR 82 (262)
T ss_dssp TTCCCEEEEEECTTBCCHHHHHHHHHHTTCEEEEEEHHHHHHTSCCGGGCSEEEECCBCGGGGTTSTTHHHHHHHHHSHH
T ss_pred CCCCCeEEEEeCCCCCcHHHHHHHHHHcCCceEEEEeeecccCcccccccceEEEeccccccccccchhHHHhhhhhhhH
Confidence 4578999999875 55777899999999999988754 34689999999999965554321 1 11112
Q ss_pred HHHHHHHHH-hCCCCEEEEechHHHHhhh
Q 045794 109 MAEALCAYI-EKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 109 l~~~i~~~~-~~g~PIlGIClG~QlLa~a 136 (578)
+...+.++. +.++|+||||-|+|+|.+.
T Consensus 83 ~~~~~~~f~~~~~~~iLGICNGfQiL~el 111 (262)
T d1t3ta2 83 VRDEFETFFHRPQTLALGVCNGCQMMSNL 111 (262)
T ss_dssp HHHHHHHHHHSSSCEEEEETHHHHHHHTT
T ss_pred HHHHHHHHhhcCCceEEeechHHHHHHHh
Confidence 344555555 4689999999999999983
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.09 E-value=5.4e-10 Score=106.24 Aligned_cols=179 Identities=18% Similarity=0.183 Sum_probs=120.5
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
.++|+.....|+..+++-+ .+.++.+.+....|+..- --....+....+.+..+..+.+.++|++
T Consensus 26 a~~A~aa~~~Ga~~i~~~~--------------~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~agad 90 (222)
T d1y0ea_ 26 SKMALAAYEGGAVGIRANT--------------KEDILAIKETVDLPVIGI-VKRDYDHSDVFITATSKEVDELIESQCE 90 (222)
T ss_dssp HHHHHHHHHHTCSEEEEES--------------HHHHHHHHHHCCSCEEEE-CBCCCTTCCCCBSCSHHHHHHHHHHTCS
T ss_pred HHHHHHHHHCCCeEEecCC--------------HHHHHHHHHhcCCcccee-eccCCcchHHhhcccHHHHHhHHHcCCC
Confidence 5678888888999876522 233455555566665311 0111112234667788899999999999
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTV 469 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (578)
.|.+......+..+.+ .+.++.+.+.+. ..+ +..+
T Consensus 91 ~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~-v~~~------------------------------------ 125 (222)
T d1y0ea_ 91 VIALDATLQQRPKETL-------DELVSYIRTHAP-NVE-IMAD------------------------------------ 125 (222)
T ss_dssp EEEEECSCSCCSSSCH-------HHHHHHHHHHCT-TSE-EEEE------------------------------------
T ss_pred EEEeeccccccccchH-------HHHHHHHHHhCC-ceE-Eeec------------------------------------
Confidence 9988765554321111 245555555443 222 2222
Q ss_pred cccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCC-----CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 045794 470 NGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGF-----DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 470 ~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-----d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
....+.+..+.+.|++.|.++.....++..+. ++++++++++.+++|||++|||++.+|+.++++ .
T Consensus 126 --------~~t~~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~~-~ 196 (222)
T d1y0ea_ 126 --------IATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMD-L 196 (222)
T ss_dssp --------CSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHH-T
T ss_pred --------CCCHHHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHH-c
Confidence 11245677888999998887665444444443 478899999999999999999999999999996 9
Q ss_pred CchHHhhhhhhcc
Q 045794 545 NASAALAAGIFHR 557 (578)
Q Consensus 545 G~~gv~vgsa~~~ 557 (578)
||+||++||++.+
T Consensus 197 GAdgV~iGsAi~r 209 (222)
T d1y0ea_ 197 GVHCSVVGGAITR 209 (222)
T ss_dssp TCSEEEECHHHHC
T ss_pred CCCEEEEchhhcC
Confidence 9999999999963
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.97 E-value=2.6e-09 Score=102.08 Aligned_cols=180 Identities=12% Similarity=0.050 Sum_probs=123.9
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
.++|+...+.|+..|.+-+ .+.++++++.+..|+.....+ ........+.+..+..+.+...|++
T Consensus 36 ~~~A~a~~~~Ga~~i~~~~--------------~~~~~~ir~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gad 100 (230)
T d1yxya1 36 PLMAKAAQEAGAVGIRANS--------------VRDIKEIQAITDLPIIGIIKK-DYPPQEPFITATMTEVDQLAALNIA 100 (230)
T ss_dssp HHHHHHHHHHTCSEEEEES--------------HHHHHHHHTTCCSCEEEECBC-CCTTSCCCBSCSHHHHHHHHTTTCS
T ss_pred HHHHHHHHHCCCeEEEecC--------------hhhHHHHHhhhhcchhhhhcc-cCCcceeeechhHHHHHHHHhcCCC
Confidence 3678999999999886632 244667777778887543322 2222234667778889999999999
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTV 469 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (578)
.+.+.+...... +. ....++++++...|+. .++. .+
T Consensus 101 ~i~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~-~~v~-~~------------------------------------ 136 (230)
T d1yxya1 101 VIAMDCTKRDRH-DG-----LDIASFIRQVKEKYPN-QLLM-AD------------------------------------ 136 (230)
T ss_dssp EEEEECCSSCCT-TC-----CCHHHHHHHHHHHCTT-CEEE-EE------------------------------------
T ss_pred EEEEeccccccc-ch-----hhHHHHHHHHHhcCCC-ceEe-cC------------------------------------
Confidence 998877554321 11 1113666677676642 2222 12
Q ss_pred cccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC--CCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCch
Q 045794 470 NGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG--FDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNAS 547 (578)
Q Consensus 470 ~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G--~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~ 547 (578)
+...+.++.+.+.|++.|.++.....+...+ .....+.+.....++|||+.|||++.+|+.++++ .||+
T Consensus 137 --------v~t~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~t~~d~~~al~-~GAd 207 (230)
T d1yxya1 137 --------ISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKIND-LGVA 207 (230)
T ss_dssp --------CSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHT-TCCS
T ss_pred --------CCCHHHHHHHHhcCCCEEEeecccccccccccchHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH-cCCC
Confidence 1225678888999999888887766554333 2333455566678999999999999999999995 9999
Q ss_pred HHhhhhhhcc
Q 045794 548 AALAAGIFHR 557 (578)
Q Consensus 548 gv~vgsa~~~ 557 (578)
||+|||++..
T Consensus 208 ~V~vGsAi~~ 217 (230)
T d1yxya1 208 GIVVGGAITR 217 (230)
T ss_dssp EEEECHHHHC
T ss_pred EEEEChhhcC
Confidence 9999999973
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.90 E-value=4.3e-10 Score=109.87 Aligned_cols=97 Identities=25% Similarity=0.332 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+|.++++.+++.|++++.+.|+++.-....+++++++++.+.+.+|+.++|||++.++++++++ .||+.|+++|.+..+
T Consensus 33 dP~~~a~~~~~~gadei~ivDl~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~-~G~~kVii~s~~~~~ 111 (252)
T d1h5ya_ 33 DPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFR-AGADKVSVNTAAVRN 111 (252)
T ss_dssp CHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH-HTCSEEEESHHHHHC
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccccccccHHHHHHHHHhhcCCcceeecccchhhhhhhHhh-cCCcEEEecccccCC
Confidence 7999999999999999999999877444557889999999999999999999999999999996 999999999999988
Q ss_pred CCCHHHHHHHHHhCCCee
Q 045794 559 EVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 559 ~~~~~~~~~~l~~~~i~v 576 (578)
+..+.++.+.+.++.+-+
T Consensus 112 ~~~~~~~~~~~G~q~iv~ 129 (252)
T d1h5ya_ 112 PQLVALLAREFGSQSTVV 129 (252)
T ss_dssp THHHHHHHHHHCGGGEEE
T ss_pred cchHHHHHHhcCCCcEEE
Confidence 888888888888876543
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.89 E-value=9e-10 Score=107.62 Aligned_cols=97 Identities=15% Similarity=0.243 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+|.++++.+.+.|++++.+.|+++.-.....++++++++++.+.+|+.++|||++.++++++++ .||+.|++||+++.+
T Consensus 31 dP~~~a~~~~~~g~dei~ivDld~~~~~~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~-~Ga~kviigs~~~~n 109 (253)
T d1thfd_ 31 DPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELIL-RGADKVSINTAAVEN 109 (253)
T ss_dssp CHHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH-TTCSEEEESHHHHHC
T ss_pred CHHHHHHHHHHcCCCEEEEEeecccccCcccHHHHHHHHHhccCccceeecccccchhhhhHHh-cCCCEEEEChHHhhC
Confidence 6999999999999999999998765333446889999999999999999999999999999996 999999999999998
Q ss_pred CCCHHHHHHHHHhCCCee
Q 045794 559 EVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 559 ~~~~~~~~~~l~~~~i~v 576 (578)
+-.+.++.+.+.++.+.+
T Consensus 110 ~~~l~~~~~~~G~~~iv~ 127 (253)
T d1thfd_ 110 PSLITQIAQTFGSQAVVV 127 (253)
T ss_dssp THHHHHHHHHHCGGGEEE
T ss_pred hHHHHHHHHHcCCeeEEE
Confidence 877888888888776543
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.84 E-value=9e-10 Score=107.49 Aligned_cols=122 Identities=16% Similarity=0.238 Sum_probs=100.7
Q ss_pred CeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCC-CCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 045794 426 QAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGR-PIGAYELAKAVEDLGAGEILLNCIDCDG 504 (578)
Q Consensus 426 ~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~e~~~~~~~~G~~~ii~tdi~~dG 504 (578)
.||+.+||++++++. +. .++.... --+|.+.++.+.+.|++++.+.|+++.-
T Consensus 4 kRIIP~IDi~~G~~V----------k~-----------------~~~~~~~~~gdP~~~a~~~~~~g~dei~iiDl~~~~ 56 (251)
T d1ka9f_ 4 KRIVPCLDVHAGRVV----------KG-----------------VNFVNLRDAGDPVEAARAYDEAGADELVFLDISATH 56 (251)
T ss_dssp BEEEEEEEEETTEET----------TC-----------------CCSSCCSSTTCHHHHHHHHHHHTCSCEEEEECCSST
T ss_pred CcEEEEEEEECCEEE----------EC-----------------ccCCceEECCCHHHHHHHHHHcCCCEEEEEeccccc
Confidence 589999999987542 11 1121111 1269999999999999999999998765
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCe
Q 045794 505 QGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIE 575 (578)
Q Consensus 505 ~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~ 575 (578)
...+.++++++++.+.+.+|+.++|||++.++++++++ .|++.|++||.++.++-.++++.+.+.++.+.
T Consensus 57 ~~~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~-~Ga~kVii~s~~~~n~~~i~~~~~~~G~q~iv 126 (251)
T d1ka9f_ 57 EERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLL-SGADKVSVNSAAVRRPELIRELADHFGAQAVV 126 (251)
T ss_dssp TCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH-HTCSEEEECHHHHHCTHHHHHHHHHHCGGGEE
T ss_pred ccchhHHHHHHHHHhccCcchheeccccCHHHHHHHHH-cCCCEEEECchhhhCHHHHHHHHHhhcccccc
Confidence 55567889999999999999999999999999999996 99999999999999888788888888877654
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=98.77 E-value=2.5e-09 Score=107.34 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCC--CC-CCCCCHHHHHHHHhhCCCcEEEecCCCCHHHH-----------HHHHHhc
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCD--GQ-GKGFDMDLIKLISDAVSIPVIASSGAGAVEHF-----------SDVFRKT 544 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~d--G~-~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi-----------~~l~~~~ 544 (578)
+|++.++.+.+.|+++|++.|+++. |. ...+++++++++++.+.+|+.++|||++.+|+ +++++ .
T Consensus 49 dP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~-~ 127 (323)
T d1jvna1 49 KPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFR-S 127 (323)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHH-H
T ss_pred CHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHHH-c
Confidence 7999999999999999999999753 22 23456899999999999999999999998875 67885 8
Q ss_pred CchHHhhhhhhc-------------cCCCCHHHHHHHHHhCCCee
Q 045794 545 NASAALAAGIFH-------------RKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 545 G~~gv~vgsa~~-------------~~~~~~~~~~~~l~~~~i~v 576 (578)
||+.|++||++. .++-.++++.+.+++|.|.+
T Consensus 128 GadKVvI~T~ai~~p~~~~e~~~~~~n~~li~~i~~~fGsq~Ivv 172 (323)
T d1jvna1 128 GADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVI 172 (323)
T ss_dssp TCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEE
T ss_pred CCCeEEechHHhhChHHHHHHHhhcccchhHHHHHHHhCCceEEE
Confidence 999999999874 56667899999999997755
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.72 E-value=6.1e-09 Score=100.66 Aligned_cols=92 Identities=20% Similarity=0.134 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+|++.++.+.+.|++++.+.|+++- ..++.+.++++++++.+.+|+.++|||++.++++++++ .|++.|+++|.++..
T Consensus 32 dP~~~a~~~~~~ga~~l~i~DLd~~-~~~~~~~~~i~~i~~~~~~pi~vGGGIrs~~~~~~ll~-~Ga~kVvi~s~~~~~ 109 (239)
T d1vzwa1 32 SPLEAALAWQRSGAEWLHLVDLDAA-FGTGDNRALIAEVAQAMDIKVELSGGIRDDDTLAAALA-TGCTRVNLGTAALET 109 (239)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHH-HTSCCCHHHHHHHHHHCSSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHHHHC
T ss_pred CHHHHHHHHHHcCCCEEEEEeeccc-ccccchHHHHHHHHhhcCcceEeecccccchhhhhhhc-cccccchhhHHhhhc
Confidence 7999999999999999999999866 45678999999999999999999999999999999996 999999999999988
Q ss_pred CCCHHHHHHHHHhC
Q 045794 559 EVPIQSVKEHLYKE 572 (578)
Q Consensus 559 ~~~~~~~~~~l~~~ 572 (578)
+-.+.++.+.+.++
T Consensus 110 ~~~~~~~~~~~g~~ 123 (239)
T d1vzwa1 110 PEWVAKVIAEHGDK 123 (239)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred cccchhhhccCCce
Confidence 77777777777765
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=98.71 E-value=5.5e-09 Score=101.14 Aligned_cols=103 Identities=19% Similarity=0.182 Sum_probs=85.6
Q ss_pred eEEEeeeEeecCCCCEEEEecceeeeeeccccccEEecCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHH
Q 045794 269 RVIACLDVRANDKGDLVVTKGDQYDVREHTKENEVRNLGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRL 348 (578)
Q Consensus 269 riIp~iDl~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~ 348 (578)
+++.++|++ +++ +..+||+ .... -++.++++.+.+.|+.++++.|++. +|+ ..+.|++++++
T Consensus 121 ~~~v~iD~~---~~~-~~~~g~~----------~~~~-~~~~~~~~~~~~~g~~eii~~dId~--dGt-~~G~d~~l~~~ 182 (241)
T d1qo2a_ 121 EPVFSLDTR---GGR-VAFKGWL----------AEEE-IDPVSLLKRLKEYGLEEIVHTEIEK--DGT-LQEHDFSLTKK 182 (241)
T ss_dssp EEEEEEEEE---TTE-ECCTTCS----------SCSC-CCHHHHHHHHHTTTCCEEEEEETTH--HHH-TCCCCHHHHHH
T ss_pred ceeeecccc---ccc-ccccCcc----------ccee-eehhHHHHHhhccccceEEEeehhh--hhh-ccccchhhhhh
Confidence 567799999 776 4678876 2222 5899999999999999999999986 333 34789999999
Q ss_pred HhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC------cceeecchhhhcc
Q 045794 349 TSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG------ADKISIGSDAVYA 400 (578)
Q Consensus 349 i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G------a~~vv~gt~~~~~ 400 (578)
+.+.+.+|+.++||+++.+| ++++.+.| ++-|++|++....
T Consensus 183 i~~~~~~pvi~~GGv~s~~d-----------i~~l~~ig~~~~~~~~gvivG~al~~g 229 (241)
T d1qo2a_ 183 IAIEAEVKVLAAGGISSENS-----------LKTAQKVHTETNGLLKGVIVGRAFLEG 229 (241)
T ss_dssp HHHHHTCEEEEESSCCSHHH-----------HHHHHHHHHHTTTSEEEEEECHHHHTT
T ss_pred hhccCCceEEEECCCCCHHH-----------HHHHHHccccccCCEeeEEEHHHHHCC
Confidence 99989999999999999987 88887765 7889999998874
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=98.66 E-value=3e-07 Score=88.37 Aligned_cols=185 Identities=21% Similarity=0.140 Sum_probs=127.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEe-cccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLN-ITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~D-l~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
-||.++|+.|.+.||.-|.++- =.-+ +| +++.++++++.+.+||.----|-+.- ++.+...
T Consensus 65 ~dp~~~A~~y~~~GA~aiSVLTe~~~F-~G------s~~dl~~v~~~~~iPvLrKDFIid~~-----------QI~ea~~ 126 (254)
T d1vc4a_ 65 VDPVEAALAYARGGARAVSVLTEPHRF-GG------SLLDLKRVREAVDLPLLRKDFVVDPF-----------MLEEARA 126 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCCSSS-CC------CHHHHHHHHHHCCSCEEEESCCCSHH-----------HHHHHHH
T ss_pred CCHHHHHHHHHhcCCceEEEEcCcccc-cc------cHHHHHHHHHHcCCCcccCCccccHH-----------HHHHHHh
Confidence 5999999999999999999864 2222 22 26677888888899998777777753 3778888
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|||.|.+-.+.+.+ +. .+++ +.+...|-+. ++-+
T Consensus 127 ~GADaVLLIaall~~--~l--------~~l~-~~A~~lgl~~-LVEv--------------------------------- 161 (254)
T d1vc4a_ 127 FGASAALLIVALLGE--LT--------GAYL-EEARRLGLEA-LVEV--------------------------------- 161 (254)
T ss_dssp TTCSEEEEEHHHHGG--GH--------HHHH-HHHHHHTCEE-EEEE---------------------------------
T ss_pred ccchHHHHHHHHHHH--HH--------HHHH-HHHHHhCCce-EEEe---------------------------------
Confidence 999999887665542 21 1444 4466677542 2211
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCH--HHHHHHHhh-CCCcEEEecCCCCHHHHHHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDM--DLIKLISDA-VSIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~--~li~~l~~~-~~ipVIasGGi~s~eDi~~l~~ 542 (578)
+. .+-++.+.+.|+.-|-+++++-.-....++. .+.+.+.+. .++.+|+.+||.+.+|++.+ +
T Consensus 162 ----h~---------~~El~~a~~~~a~iIGINnRdL~t~~vd~~~~~~l~~~i~~~~~~~i~IsESGI~~~~dv~~l-~ 227 (254)
T d1vc4a_ 162 ----HT---------ERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKAL-E 227 (254)
T ss_dssp ----CS---------HHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTT-T
T ss_pred ----cc---------HHHHhhhhcCCCCEEEEeccchhhhhcchHHHHHhhhcccccCCCCEEEEccCCCCHHHHHHH-H
Confidence 11 3445667788998888988766533223332 222223332 25779999999999999886 4
Q ss_pred hcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 543 KTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
.|++|++||+++...+..-..+++.+
T Consensus 228 -~g~davLIGesLm~~~d~~~~l~~L~ 253 (254)
T d1vc4a_ 228 -GLFDAVLIGTSLMRAPDLEAALRELV 253 (254)
T ss_dssp -TTCSEEEECHHHHTSSCHHHHHHHHH
T ss_pred -cCCCEEEEChhhcCCCCHHHHHHHhc
Confidence 69999999999998776555565544
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.66 E-value=3.7e-07 Score=87.46 Aligned_cols=175 Identities=18% Similarity=0.276 Sum_probs=124.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.||.++|+ |++.||.-|.|+ |=.-+ + + +++.++.+++.+.+||-. ++ ||.-.. ++.+...
T Consensus 63 ~d~~~~a~-~~~~gA~aiSVLTd~~~F-~---G---s~~dl~~v~~~~~~PiLr----KD------FIid~~-QI~ea~~ 123 (247)
T d1a53a_ 63 RDPIEYSK-FMERYAVGLSILTEEKYF-N---G---SYETLRKIASSVSIPILM----KD------FIVKES-QIDDAYN 123 (247)
T ss_dssp CCHHHHHH-HHTTTCSEEEEECCCTTT-C---C---CHHHHHHHHHHCCSCEEE----ES------CCCSHH-HHHHHHH
T ss_pred cCHHHHHH-HHHhCCCeEEEecCcccc-c---c---chHHHHHHHhccccceee----cc------cccChH-HHHHHHH
Confidence 48999996 667899998875 33332 1 1 367788888889999963 22 233333 4667778
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|||.|.+=.+.+.+ .++ +.+-+.+..+|-+.++ . |
T Consensus 124 ~GADaiLLI~~~L~~-~~l---------~~l~~~a~~lgl~~Lv---E------------------v------------- 159 (247)
T d1a53a_ 124 LGADTVLLIVKILTE-REL---------ESLLEYARSYGMEPLI---E------------------I------------- 159 (247)
T ss_dssp HTCSEEEEEGGGSCH-HHH---------HHHHHHHHTTTCCCEE---E------------------E-------------
T ss_pred hhcchhhhhhhhccH-HHH---------HHHHHHHHHHhhhHHh---h------------------c-------------
Confidence 999999998777753 222 3344556777755322 1 1
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRK 543 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~ 543 (578)
...+-++++.+.|++-|-+++++-. .-..|.+...++...+ ++.+|+.+||.+.+|++++.+
T Consensus 160 -------------h~~~El~~a~~~~a~iIGINnRnL~--t~~vd~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~- 223 (247)
T d1a53a_ 160 -------------NDENDLDIALRIGARFIGINSRDLE--TLEINKENQRKLISMIPSNVVKVAESGISERNEIEELRK- 223 (247)
T ss_dssp -------------CSHHHHHHHHHTTCSEEEEESBCTT--TCCBCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHH-
T ss_pred -------------CCHHHHHHHHhCCCCeEeeeccChh--hhhhhhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHH-
Confidence 1144566777899988878876653 4456888887877766 688999999999999999985
Q ss_pred cCchHHhhhhhhccCCC
Q 045794 544 TNASAALAAGIFHRKEV 560 (578)
Q Consensus 544 ~G~~gv~vgsa~~~~~~ 560 (578)
.|++|++||+++...+-
T Consensus 224 ~G~davLIGeaLmk~~d 240 (247)
T d1a53a_ 224 LGVNAFLIGSSLMRNPE 240 (247)
T ss_dssp TTCCEEEECHHHHHCTT
T ss_pred CCCCEEEECHHHcCCCc
Confidence 99999999999998664
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.33 E-value=3.2e-06 Score=84.21 Aligned_cols=96 Identities=22% Similarity=0.310 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC-------C---------------CCCCCCC-----HHHHHHHHhhC-CCcEEEecC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC-------D---------------GQGKGFD-----MDLIKLISDAV-SIPVIASSG 530 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~-------d---------------G~~~G~d-----~~li~~l~~~~-~ipVIasGG 530 (578)
+..++++.+++.|++.+++++... + |-+.|+. ++.++++++.+ ++|||++||
T Consensus 184 ~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~GG 263 (312)
T d1gtea2 184 DIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGG 263 (312)
T ss_dssp CHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESS
T ss_pred hHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEEEEcC
Confidence 467899999999999999765311 1 1123332 57788888877 599999999
Q ss_pred CCCHHHHHHHHHhcCchHHhhhhhhcc-CCCCH----HHHHHHHHhCCCe
Q 045794 531 AGAVEHFSDVFRKTNASAALAAGIFHR-KEVPI----QSVKEHLYKEGIE 575 (578)
Q Consensus 531 i~s~eDi~~l~~~~G~~gv~vgsa~~~-~~~~~----~~~~~~l~~~~i~ 575 (578)
|.+.+|+.+.+. +||++|.++|+++. |+..+ ++++++|.++|++
T Consensus 264 I~~~~d~~~~l~-aGA~~Vqv~ta~~~~G~~~i~~i~~~L~~~m~~~g~~ 312 (312)
T d1gtea2 264 IDSAESGLQFLH-SGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIE 312 (312)
T ss_dssp CCSHHHHHHHHH-TTCSEEEESHHHHTSCTTHHHHHHHHHHHHHHHTTCG
T ss_pred CCCHHHHHHHHH-cCCCeeEECHhhhccChHHHHHHHHHHHHHHHHcCCC
Confidence 999999999996 99999999998764 45434 4566677777763
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.32 E-value=2.6e-06 Score=80.46 Aligned_cols=192 Identities=14% Similarity=0.168 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+..+.++.+.+.|++++| +|+ |+..- .+-.-..+.++.+.+.+.+|+.+===+.+.+. -++++.+
T Consensus 14 ~~l~~~i~~~~~~g~d~iH-iDimDg~Fv--pn~s~g~~~i~~i~~~t~~~~dvHLMv~~P~~----------~i~~~~~ 80 (217)
T d2flia1 14 ANFASELARIEETDAEYVH-IDIMDGQFV--PNISFGADVVASMRKHSKLVFDCHLMVVDPER----------YVEAFAQ 80 (217)
T ss_dssp GGHHHHHHHHHHTTCCEEE-EEEEBSSSS--SCBCBCHHHHHHHHTTCCSEEEEEEESSSGGG----------GHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEE-EEcccCcCC--CccccCHHHHHHHHhcCCCceEeEEEecCHHH----------HHHHHHH
Confidence 4666788888899999999 454 33211 11233367888888877888766434445442 4899999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.|.+-..+..+.. +.++.+ +..|. ++-+++....
T Consensus 81 ~ga~~i~~H~E~~~~~~-----------~~i~~i-~~~g~-~~Gial~p~T----------------------------- 118 (217)
T d2flia1 81 AGADIMTIHTESTRHIH-----------GALQKI-KAAGM-KAGVVINPGT----------------------------- 118 (217)
T ss_dssp HTCSEEEEEGGGCSCHH-----------HHHHHH-HHTTS-EEEEEECTTS-----------------------------
T ss_pred cCCcEEEeccccccCHH-----------HHHHHH-HhcCC-eEEEEecCCc-----------------------------
Confidence 99999999877776432 345554 44653 5666675322
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCC---HHHHHHHHhh-----CCCcEEEecCCCCHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFD---MDLIKLISDA-----VSIPVIASSGAGAVEHF 537 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d---~~li~~l~~~-----~~ipVIasGGi~s~eDi 537 (578)
. .+.++.+.+ -++.|+++.+.-.-..+.+. ++.++++++. .+++|.+-|||. .+.+
T Consensus 119 -----------~---~~~~~~~l~-~id~vliM~V~pG~~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i 182 (217)
T d2flia1 119 -----------P---ATALEPLLD-LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTI 182 (217)
T ss_dssp -----------C---GGGGGGGTT-TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTH
T ss_pred -----------c---hhHHHhHHh-hcCEEEEEEEcCcccccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCC-HHHH
Confidence 1 111122222 27999999997654555554 3445555432 367899999995 5789
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
..+.+ .||+.+++||++...+ ++.+..+.|++
T Consensus 183 ~~l~~-aGad~~V~Gsaif~~~-d~~~~i~~lr~ 214 (217)
T d2flia1 183 RACYE-AGANVFVAGSYLFKAS-DLVSQVQTLRT 214 (217)
T ss_dssp HHHHH-HTCCEEEESHHHHTSS-CHHHHHHHHHH
T ss_pred HHHHH-CCCCEEEEchHHhCCC-CHHHHHHHHHH
Confidence 99985 9999999999998655 55555555553
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.27 E-value=6.3e-06 Score=78.29 Aligned_cols=174 Identities=21% Similarity=0.251 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+++++++...+.|++.|++=+=++........-.-...+++++++.++++.+- +. ++-.++.
T Consensus 30 ~~~~~~v~~al~~Gv~~iqlR~K~~~~~~~~~~~~~a~~l~~lc~~~~~~liIn----d~-------------~~lA~~~ 92 (226)
T d2tpsa_ 30 ADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVN----DD-------------VELALNL 92 (226)
T ss_dssp SCHHHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEE----SC-------------HHHHHHH
T ss_pred cCHHHHHHHHHHCCCCEEEEcCCCccchhHHHHHHHHHHHHHHHHHhCCeEEEc----CC-------------HHHHhhc
Confidence 689999999999999998876432210000011122344666777788998753 32 5567778
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|+|.|=+|..... +.++.+.+|...+.+|..
T Consensus 93 ~adGvHl~~~d~~----------------~~~~r~~~~~~iig~S~h--------------------------------- 123 (226)
T d2tpsa_ 93 KADGIHIGQEDAN----------------AKEVRAAIGDMILGVSAH--------------------------------- 123 (226)
T ss_dssp TCSEEEECTTSSC----------------HHHHHHHHTTSEEEEEEC---------------------------------
T ss_pred cCCEEEeccccch----------------hhhhhhcccceeeeeecc---------------------------------
Confidence 9999999864432 234455566433323221
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC----CCHHHHHHHHh-hCCCcEEEecCCCCHHHHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG----FDMDLIKLISD-AVSIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G----~d~~li~~l~~-~~~ipVIasGGi~s~eDi~~l~ 541 (578)
+ .+.++.+.+.|++.+.+-.+-...+..+ ..++.++.+.+ .+++||+|-||| +.+++.++.
T Consensus 124 ------------~-~~e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~~~~~Pv~AiGGI-~~~ni~~l~ 189 (226)
T d2tpsa_ 124 ------------T-MSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGI-TIDNAAPVI 189 (226)
T ss_dssp ------------S-HHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSC-CTTTSHHHH
T ss_pred ------------c-hHHHHHHHhCcCCeEEEecccccccccccccccccchhHHHHHhcCCCCEEEecCC-CHHHHHHHH
Confidence 1 3455677788999999887754444333 24577777764 578999999999 789999998
Q ss_pred HhcCchHHhhhhhhccCCCC
Q 045794 542 RKTNASAALAAGIFHRKEVP 561 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~~~ 561 (578)
+ .|++|+.+.+++...+-+
T Consensus 190 ~-~Ga~giAvis~I~~a~dp 208 (226)
T d2tpsa_ 190 Q-AGADGVSMISAISQAEDP 208 (226)
T ss_dssp H-TTCSEEEESHHHHTSSCH
T ss_pred H-hCCCEEEEhHHhhcCCCH
Confidence 5 999999999999876544
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=98.26 E-value=5.5e-06 Score=77.50 Aligned_cols=169 Identities=17% Similarity=0.172 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
+.++.++...+.|++.+++=+=+.... ........++++++..++++.+ .+. ++-..+.|
T Consensus 18 ~~~~~v~~~l~~Gv~~vqlR~k~~~~~---e~~~~a~~l~~i~~~~~~~lii----nd~-------------~~lA~~~~ 77 (206)
T d1xi3a_ 18 PEVESVREALEGGATAIQMRIKNAPTR---EMYEIGKTLRQLTREYDALFFV----DDR-------------VDVALAVD 77 (206)
T ss_dssp CHHHHHHHHHHTTCSEEEECCCSCCHH---HHHHHHHHHHHHHHHTTCEEEE----ESC-------------HHHHHHHT
T ss_pred CHHHHHHHHHHcCCCEEEEcCCCCCHH---HHHHHHHHHHHHHHHcCCeEEe----chh-------------HHHHHhcc
Confidence 457888888889999888643222100 0112234466777777888875 332 56677889
Q ss_pred cceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEE
Q 045794 388 ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQC 467 (578)
Q Consensus 388 a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (578)
++.|=+|..... + +..+.++++.++. ..+.
T Consensus 78 adGvHl~~~~~~----------------~-~~~~~~~~~~iig-~s~h-------------------------------- 107 (206)
T d1xi3a_ 78 ADGVQLGPEDMP----------------I-EVAKEIAPNLIIG-ASVY-------------------------------- 107 (206)
T ss_dssp CSEEEECTTSCC----------------H-HHHHHHCTTSEEE-EEES--------------------------------
T ss_pred CceEeecccccc----------------H-hhhhhcccccccc-cccC--------------------------------
Confidence 999999864322 1 2234445554433 2211
Q ss_pred EEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCC---CCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 045794 468 TVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK---GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 468 ~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~---G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
+ .+.++.+.+.|++.+.+-.+-...+.. ...++.++++.+..++||+|-||| +.+++.++++ .
T Consensus 108 -----------~-~~e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~~~Pv~AiGGI-~~~ni~~~~~-~ 173 (206)
T d1xi3a_ 108 -----------S-LEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGI-NKDNAREVLK-T 173 (206)
T ss_dssp -----------S-HHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSC-CTTTHHHHHT-T
T ss_pred -----------C-HHHHHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhcCCCEEEECCC-CHHHHHHHHH-h
Confidence 1 345667788899999988765443333 347899999999999999999999 7789999985 9
Q ss_pred CchHHhhhhhhccCCC
Q 045794 545 NASAALAAGIFHRKEV 560 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~ 560 (578)
|++||.+.+++...+-
T Consensus 174 Ga~gvAvis~I~~~~d 189 (206)
T d1xi3a_ 174 GVDGIAVISAVMGAED 189 (206)
T ss_dssp TCSEEEESHHHHTSSS
T ss_pred CCCEEEEhHHHHCCCC
Confidence 9999999999976554
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=98.25 E-value=1.9e-06 Score=86.45 Aligned_cols=176 Identities=17% Similarity=0.234 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+| ++|..+.++|. +-++- +.. ......+.++++.+ ...++-+.-|+..- .++.++.++++
T Consensus 49 ~~~-~mA~als~~GG--lGvi~--r~~----~~e~~~~~i~~vk~-~~~~v~~~vgv~~~---------~~e~~~~li~a 109 (330)
T d1vrda1 49 TEA-ALAKALAREGG--IGIIH--KNL----TPDEQARQVSIVKK-TRLLVGAAVGTSPE---------TMERVEKLVKA 109 (330)
T ss_dssp CSH-HHHHHHHTTTC--EEEEC--SSS----CHHHHHHHHHHHHT-CCBCCEEEECSSTT---------HHHHHHHHHHT
T ss_pred CCH-HHHHHHHHCCC--eEEee--ccc----chhhhHHHHHHHhh-hccEEEEEEecCHH---------HHHHHHHHHHC
Confidence 344 78888888765 33331 210 11222334444433 33444444455432 35789999999
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
|++.++|.++.-. ...+. +.++.+.+.|..-.|++ =
T Consensus 110 gvd~ivId~A~G~-~~~~~--------~~ik~ik~~~~~~~via-G---------------------------------- 145 (330)
T d1vrda1 110 GVDVIVIDTAHGH-SRRVI--------ETLEMIKADYPDLPVVA-G---------------------------------- 145 (330)
T ss_dssp TCSEEEECCSCCS-SHHHH--------HHHHHHHHHCTTSCEEE-E----------------------------------
T ss_pred CCCEEEEecCCCC-chhHH--------HHHHHHHHhCCCCCEEe-e----------------------------------
Confidence 9999999766554 23332 67788887775433333 1
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC-------CCCCCCC-CCHHHH---HHHHhhCCCcEEEecCCCCHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID-------CDGQGKG-FDMDLI---KLISDAVSIPVIASSGAGAVE 535 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~-------~dG~~~G-~d~~li---~~l~~~~~ipVIasGGi~s~e 535 (578)
++...+.++.+.+.|++.|.+ .+. +..+.-| |.+..+ .+.++..++||||.|||.+..
T Consensus 146 ----------nV~t~~~a~~l~~~GaD~v~V-Gig~Gs~ctt~~~~G~g~p~~sai~~~~~~~~~~~vpvIAdGGi~~~g 214 (330)
T d1vrda1 146 ----------NVATPEGTEALIKAGADAVKV-GVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSG 214 (330)
T ss_dssp ----------EECSHHHHHHHHHTTCSEEEE-CSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHH
T ss_pred ----------chhHHHHHHHHHHcCCCEEee-ccccCccccccceeccccccchhHHHHHHHHHhcCceEEecCCcccCC
Confidence 222367889999999999886 332 2222333 244444 444566689999999999999
Q ss_pred HHHHHHHhcCchHHhhhhhhcc
Q 045794 536 HFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 536 Di~~l~~~~G~~gv~vgsa~~~ 557 (578)
|+.+++. +|||+||+|+.|..
T Consensus 215 diakAla-~GAd~Vm~Gs~fa~ 235 (330)
T d1vrda1 215 DIVKALA-AGAESVMVGSIFAG 235 (330)
T ss_dssp HHHHHHH-TTCSEEEESHHHHT
T ss_pred chheeee-ccCceeeecchhee
Confidence 9999995 99999999998854
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=98.15 E-value=6.8e-07 Score=88.97 Aligned_cols=95 Identities=22% Similarity=0.277 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCC----------------CCCCCC-----CHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCD----------------GQGKGF-----DMDLIKLISDAVSIPVIASSGAGAVEHF 537 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~d----------------G~~~G~-----d~~li~~l~~~~~ipVIasGGi~s~eDi 537 (578)
+..++++.+++.|++.+++.+.... |.++|+ .++.++++++.+++|||++|||.+.+|+
T Consensus 177 ~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~~ipIig~GGI~s~~Da 256 (311)
T d1ep3a_ 177 DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDV 256 (311)
T ss_dssp CSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHHH
T ss_pred chHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhcceeEEEeCCcCCHHHH
Confidence 3578999999999999997653211 112332 4789999999999999999999999999
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHHH----HhCCC
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEHL----YKEGI 574 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l----~~~~i 574 (578)
.+.+. +||++|++||+++.+++.+.++++.| .+.|+
T Consensus 257 ~~~i~-~GAd~V~ig~~~~~~P~i~~~I~~~L~~~m~~~g~ 296 (311)
T d1ep3a_ 257 LEMYM-AGASAVAVGTANFADPFVCPKIIDKLPELMDQYRI 296 (311)
T ss_dssp HHHHH-HTCSEEEECTHHHHCTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHH-cCCCEEEecHHHHcCChHHHHHHHHHHHHHHHcCC
Confidence 99985 89999999999999999877775544 55554
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=98.13 E-value=3.5e-05 Score=73.42 Aligned_cols=186 Identities=22% Similarity=0.183 Sum_probs=122.3
Q ss_pred ecCCHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 305 NLGKPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 305 ~~~~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
...||.++|+.|. .||.-|.|+ |=.-+ +| +++.++.+++.+.+||.--==|-+. . ++.+.
T Consensus 59 ~~~d~~~~a~~ye-~GA~aiSVLTd~~~F-~G------s~~~l~~vr~~~~~PiLrKDFIid~----------~-QI~ea 119 (251)
T d1i4na_ 59 ADASLEDFIRMYD-ELADAISILTEKHYF-KG------DPAFVRAARNLTCRPILAKDFYIDT----------V-QVKLA 119 (251)
T ss_dssp TTCCHHHHHHHHH-HHCSEEEEECCCSSS-CC------CTHHHHHHHTTCCSCEEEECCCCST----------H-HHHHH
T ss_pred CCccHHHHHHHHh-cCCcceEEecccCCC-CC------CHHHHHHHhhcccCchhhhhhhhCH----------H-HHHHH
Confidence 3469999999885 699998875 44333 22 2466778888889999642222232 2 36667
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
..+|||.|.+=...+.+ ..+ +.+-+.+..+|-+.+| +|.
T Consensus 120 ~~~GADaiLLI~~~L~~-~~l---------~~l~~~a~~lgle~Lv---------------------Evh---------- 158 (251)
T d1i4na_ 120 SSVGADAILIIARILTA-EQI---------KEIYEAAEELGMDSLV---------------------EVH---------- 158 (251)
T ss_dssp HHTTCSEEEEEGGGSCH-HHH---------HHHHHHHHTTTCEEEE---------------------EEC----------
T ss_pred HhhccceEEeecccccH-HHH---------HHHHHHHHHhCCeeec---------------------ccC----------
Confidence 78999999887777753 112 2344555667754222 111
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVF 541 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~ 541 (578)
+..|+-+.+...++.-|-+++++-. ---.|++...++.... +..+|+.+||.+++|++.+
T Consensus 159 ---------------~~~El~~al~~~~a~iiGINnRdL~--t~~vd~~~~~~L~~~ip~~~~~IaESGI~~~~d~~~l- 220 (251)
T d1i4na_ 159 ---------------SREDLEKVFSVIRPKIIGINTRDLD--TFEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDL- 220 (251)
T ss_dssp ---------------SHHHHHHHHTTCCCSEEEEECBCTT--TCCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHH-
T ss_pred ---------------CHHHHHHHhcccccceeeeeecchh--ccchhhhHHHHHHhhCCCCCEEEEcCCCCCHHHHHHH-
Confidence 2234444445567887778877654 2234666666776655 5789999999999999886
Q ss_pred HhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 542 RKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 542 ~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
+ .|++|++||+++...+.+-. ..+.|+
T Consensus 221 ~-~G~davLIG~sLm~~~~p~~-~l~~l~ 247 (251)
T d1i4na_ 221 R-GKVNAVLVGTSIMKAENPRR-FLEEMR 247 (251)
T ss_dssp T-TTCSEEEECHHHHHCSSHHH-HHHHHH
T ss_pred H-hCCCEEEEChHHhCCCCHHH-HHHHHH
Confidence 4 69999999999998775444 444443
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=3.1e-05 Score=73.92 Aligned_cols=185 Identities=17% Similarity=0.159 Sum_probs=123.7
Q ss_pred EecCCHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 304 RNLGKPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 304 ~~~~~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+...||.++++ |++.||.-|.|+ |=.-+ +| . ++.++.+++.+.+||---= ||.-. -++.+
T Consensus 65 ~~~~~p~~~a~-~~~~gA~aiSVLTe~~~F-~G---s---~~~l~~v~~~~~~PiLrKD----------FIid~-~QI~e 125 (254)
T d1piia2 65 RDDFDPARIAA-IYKHYASAISVLTDEKYF-QG---S---FNFLPIVSQIAPQPILCKD----------FIIDP-YQIYL 125 (254)
T ss_dssp CSSCCHHHHHH-HHTTTCSEEEEECCSTTT-CC---C---TTHHHHHHHHCCSCEEEES----------CCCSH-HHHHH
T ss_pred cccchhHHHHH-HHHhccCceEEecccccC-CC---C---HHHHHHHHhccccccchhc----------ccCcH-HHHHH
Confidence 34469999887 668899998875 43333 22 2 3455667777889985322 22222 23667
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
...+|||.|.+=.+.+.+ ..+ ..+-+.+..+|-+. ++ +|
T Consensus 126 ar~~GADavLLI~~~L~~-~~l---------~~l~~~a~~lgl~~-LV--------------------Ev---------- 164 (254)
T d1piia2 126 ARYYQADACLLMLSVLDD-DQY---------RQLAAVAHSLEMGV-LT--------------------EV---------- 164 (254)
T ss_dssp HHHTTCSEEEEETTTCCH-HHH---------HHHHHHHHHTTCEE-EE--------------------EE----------
T ss_pred HHhhccchhhhhHhhhcc-cHH---------HHHHHHHHHHhhhH-HH--------------------hh----------
Confidence 778999999987777763 222 23445567788553 22 11
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l 540 (578)
+ + .+-++++.+.|++-|-+++++-.- -..|++...++.... +..+|+.+||.+.+|++.+
T Consensus 165 -------h------~---~~El~~a~~~~a~iIGINnRnL~t--f~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l 226 (254)
T d1piia2 165 -------S------N---EEEQERAIALGAKVVGINNRDLRD--LSIDLNRTRELAPKLGHNVTVISESGINTYAQVREL 226 (254)
T ss_dssp -------C------S---HHHHHHHHHTTCSEEEEESEETTT--TEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHH
T ss_pred -------c------c---HHHHHHHHhhcccccCccccchhh--hhhhhHHHHHHHHhCCCCCEEEEcCCCCCHHHHHHH
Confidence 1 1 345667778899988888776542 234777666665544 5678999999999999887
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVKEH 568 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~~~ 568 (578)
+ .|++|++||+++...+-+-..+++.
T Consensus 227 -~-~g~davLiGeslm~~~dp~~~l~~L 252 (254)
T d1piia2 227 -S-HFANGFLIGSALMAHDDLHAAVRRV 252 (254)
T ss_dssp -T-TTCSEEEECHHHHTCSCHHHHHHHH
T ss_pred -H-cCCCEEEEChHHhCCCCHHHHHHHH
Confidence 4 6999999999999877655555544
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.05 E-value=2.7e-05 Score=73.82 Aligned_cols=195 Identities=18% Similarity=0.180 Sum_probs=127.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+-.+.++.+.+.|++++| +|+ |+..- .+-.-..+.++.+.+.+.+|+.+===+...+ +-++++.+
T Consensus 23 ~~l~~~i~~l~~~g~d~iH-iDImDG~Fv--pn~t~~~~~v~~i~~~t~~~~dvHLMv~~P~----------~~i~~~~~ 89 (230)
T d1rpxa_ 23 SKLGEQVKAIEQAGCDWIH-VDVMDGRFV--PNITIGPLVVDSLRPITDLPLDVHLMIVEPD----------QRVPDFIK 89 (230)
T ss_dssp GGHHHHHHHHHHTTCCCEE-EEEEBSSSS--SCBCCCHHHHHHHGGGCCSCEEEEEESSSHH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEE-EeCccCCcC--CccccChHHHhhhhhccCceeeeeeeecchh----------hhHHHHhh
Confidence 3556778888889999999 565 44321 1223346788999887888876643445543 56889999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|++.|++=..+.... ++ .++++.+. ..|. ++-++|....
T Consensus 90 ~g~~~i~~H~E~~~~~-~~--------~~~i~~ik-~~g~-k~Gialnp~T----------------------------- 129 (230)
T d1rpxa_ 90 AGADIVSVHCEQSSTI-HL--------HRTINQIK-SLGA-KAGVVLNPGT----------------------------- 129 (230)
T ss_dssp TTCSEEEEECSTTTCS-CH--------HHHHHHHH-HTTS-EEEEEECTTC-----------------------------
T ss_pred cccceeEEeccccccc-cH--------HHHHHHHH-HcCC-eEEEEeCCCC-----------------------------
Confidence 9999999987654421 11 14555654 4553 5666665321
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHh--------hCCCcEEEecCCCCHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISD--------AVSIPVIASSGAGAVEHF 537 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~--------~~~ipVIasGGi~s~eDi 537 (578)
.++.++.+.+. ++.|+++.+.-.-..+.+..+.++++++ ..++.|.+=|||. .+.+
T Consensus 130 --------------~~~~l~~~l~~-vD~VllM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn-~~~i 193 (230)
T d1rpxa_ 130 --------------PLTAIEYVLDA-VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNA 193 (230)
T ss_dssp --------------CGGGGTTTTTT-CSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTH
T ss_pred --------------CHHHHHHHHhh-CCEEEEEEecCCcccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcC-HHHH
Confidence 12222233333 8999999997644556665444443322 2368899999995 4789
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
..+.+ .||+.+++||++...+ ++.+..+.|++.
T Consensus 194 ~~l~~-~Gad~~V~GS~if~~~-d~~~~i~~lk~~ 226 (230)
T d1rpxa_ 194 YKVIE-AGANALVAGSAVFGAP-DYAEAIKGIKTS 226 (230)
T ss_dssp HHHHH-HTCCEEEESHHHHTSS-CHHHHHHHHHTC
T ss_pred HHHHH-cCCCEEEEChHHHCCC-CHHHHHHHHHHh
Confidence 99985 9999999999997655 566667777764
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.03 E-value=2.3e-05 Score=75.09 Aligned_cols=154 Identities=17% Similarity=0.215 Sum_probs=102.6
Q ss_pred hhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHH
Q 045794 341 PMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS 420 (578)
Q Consensus 341 ~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (578)
.-+++++++++...+|+.+=+-.+.+ +.|.-.+-++++.++|++.+++--.-.+.. +.+.+++
T Consensus 67 ~~~~~~~~~r~~~~~pivlm~Y~N~i-----~~~G~~~f~~~~~~~Gv~GliipDLP~eE~------------~~~~~~~ 129 (248)
T d1geqa_ 67 EAFWIVKEFRRHSSTPIVLMTYYNPI-----YRAGVRNFLAEAKASGVDGILVVDLPVFHA------------KEFTEIA 129 (248)
T ss_dssp HHHHHHHHHHTTCCCCEEEEECHHHH-----HHHCHHHHHHHHHHHTCCEEEETTCCGGGH------------HHHHHHH
T ss_pred HHHHHHHHHhhcCCCcEEEEeccccc-----cccCHHHHhhhhcccCeeEEeccCCcHHHH------------HHHHhhc
Confidence 45677888888888999877766653 223333457888899999998854434322 3355666
Q ss_pred HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc
Q 045794 421 RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI 500 (578)
Q Consensus 421 ~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi 500 (578)
+++|-.-|.+ +- ..+..+.++++.+..-+.|-+..+
T Consensus 130 ~~~gl~~I~l-va-------------------------------------------Ptt~~~ri~~i~~~s~gFiY~vs~ 165 (248)
T d1geqa_ 130 REEGIKTVFL-AA-------------------------------------------PNTPDERLKVIDDMTTGFVYLVSL 165 (248)
T ss_dssp HHHTCEEEEE-EC-------------------------------------------TTCCHHHHHHHHHHCSSEEEEECC
T ss_pred cccCcceEEE-ec-------------------------------------------ccchhHHHHHHHhcCCCeEEEEec
Confidence 7777443222 21 223456777776665555555443
Q ss_pred C-CCCCCCCCC---HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 501 D-CDGQGKGFD---MDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 501 ~-~dG~~~G~d---~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
. ..|...... .+.++++++.++.||.++-||+++||++++.+ .++|||+|||++-
T Consensus 166 ~GvTG~~~~~~~~~~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~-~~ADGvIVGSaiv 224 (248)
T d1geqa_ 166 YGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLK-EGANGVVVGSALV 224 (248)
T ss_dssp C-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEECHHHH
T ss_pred ccccccchhhhhhHHHHHHHHhhhcccceeeecccCCHHHHHHHHh-cCCCEEEECHHHH
Confidence 2 234343332 36889999999999999999999999999885 8999999999984
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.02 E-value=1.6e-05 Score=80.50 Aligned_cols=175 Identities=17% Similarity=0.213 Sum_probs=116.0
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
++|..+.++|. +-++..... .....+.+++..+.. ...+.+.-|+..- .++.++.++++|+|
T Consensus 59 ~mA~~ls~~Gg--lgvlhr~~~------~~e~~~~~~~~~~~~~~~~v~aavGv~~~---------~~er~~~l~~agvd 121 (365)
T d1zfja1 59 KMAIAIARAGG--LGVIHKNMS------ITEQAEEVRKVKRSEGRLLVAAAVGVTSD---------TFERAEALFEAGAD 121 (365)
T ss_dssp HHHHHHHHTTC--EEEECCSSC------HHHHHHHHHHHHHHTSCBCCEEEECSSTT---------HHHHHHHHHHHTCS
T ss_pred HHHHHHHHCCC--ceEEcCccC------HHHHHHHhhhhhhccCceEEEEEeccCch---------HHHHHHHHHHcCCC
Confidence 78888888764 555544321 122334444444332 3444455566542 35789999999999
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTV 469 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (578)
.++|.++--. ...+ .+.++++.+.|+...|++ =
T Consensus 122 ~ivID~A~G~-s~~~--------~~~i~~ik~~~~~~~iIa-G------------------------------------- 154 (365)
T d1zfja1 122 AIVIDTAHGH-SAGV--------LRKIAEIRAHFPNRTLIA-G------------------------------------- 154 (365)
T ss_dssp EEEECCSCTT-CHHH--------HHHHHHHHHHCSSSCEEE-E-------------------------------------
T ss_pred EEEEECCccc-ccch--------hHHHHHHHhhCCCcceee-c-------------------------------------
Confidence 9999765443 2222 367888888886444443 1
Q ss_pred cccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCCC-CHHHHHHH---HhhCCCcEEEecCCCCHHHHHH
Q 045794 470 NGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKGF-DMDLIKLI---SDAVSIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 470 ~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G~-d~~li~~l---~~~~~ipVIasGGi~s~eDi~~ 539 (578)
++...+.++.|.+.|++.|.+- ..++..+.-|. .+..+.++ +....+||||-|||++.-|+.+
T Consensus 155 -------NV~T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~K 227 (365)
T d1zfja1 155 -------NIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVK 227 (365)
T ss_dssp -------EECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHH
T ss_pred -------ccccHHHHHHHHhcCCceEEeeecccccccCcceeeeeccchhHHHHHHHHHHhCCceEEecCCcCcchhhhh
Confidence 2233678899999999988753 23444444443 44444433 4566899999999999999999
Q ss_pred HHHhcCchHHhhhhhhcc
Q 045794 540 VFRKTNASAALAAGIFHR 557 (578)
Q Consensus 540 l~~~~G~~gv~vgsa~~~ 557 (578)
++. +|||+||+|+.|..
T Consensus 228 Ala-~GAd~VMlG~~lAg 244 (365)
T d1zfja1 228 ALA-AGGNAVMLGSMFAG 244 (365)
T ss_dssp HHH-TTCSEEEESTTTTT
T ss_pred hhh-ccCCEEEecchhcc
Confidence 996 99999999998864
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=98.01 E-value=4.1e-05 Score=74.15 Aligned_cols=185 Identities=15% Similarity=0.175 Sum_probs=120.1
Q ss_pred HHHHHHHHHHcCCCeEEEE----ecccCCCCCC-------------CCchhHHHHHHHhhhc-cccEEEeCCccccccCC
Q 045794 309 PVELARQYYKEGADEISFL----NITGFRDFPL-------------GDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~----Dl~~~~~~~~-------------~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~ 370 (578)
-.++++.+.+.|+|-|=+= |--+ ||+. .-..-+++++++++.. .+|+.+=+-.+.+-
T Consensus 33 ~~~~~~~l~~~GaDiiElGiPfSDP~a--DGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~--- 107 (267)
T d1qopa_ 33 SLKIIDTLIDAGADALELGVPFSDPLA--DGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVF--- 107 (267)
T ss_dssp HHHHHHHHHHTTCSSEEEECCCSCCTT--CCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHH---
T ss_pred HHHHHHHHHHcCCCEEEECCCCCcccc--cchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEeeccchh---
Confidence 3678888999999955542 2211 2211 1112356677777764 78998888666542
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCcccccee
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAV 450 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~ 450 (578)
.|.-.+-++++-++|++-+++-=...+.. +.+.+.++++|-. .+.-+-
T Consensus 108 --~~G~~~f~~~~~~~Gv~GliipDlP~ee~------------~~~~~~~~~~~l~-~I~lva----------------- 155 (267)
T d1qopa_ 108 --NNGIDAFYARCEQVGVDSVLVADVPVEES------------APFRQAALRHNIA-PIFICP----------------- 155 (267)
T ss_dssp --TTCHHHHHHHHHHHTCCEEEETTCCGGGC------------HHHHHHHHHTTCE-EECEEC-----------------
T ss_pred --hcCchHHHHHHHhcCCCceeccchhhhhh------------HHHHHhhhccCce-EEEEec-----------------
Confidence 23333447888899999998854444322 4456778888754 332221
Q ss_pred eeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC-CCCCCCCC--C-HHHHHHHHhhCCCcEE
Q 045794 451 RVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID-CDGQGKGF--D-MDLIKLISDAVSIPVI 526 (578)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~-~dG~~~G~--d-~~li~~l~~~~~ipVI 526 (578)
..+..+.++++.+..-+.|-+..+. ..|..... + .+.++++++.+++||+
T Consensus 156 --------------------------Ptt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~ 209 (267)
T d1qopa_ 156 --------------------------PNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPAL 209 (267)
T ss_dssp --------------------------TTCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEE
T ss_pred --------------------------ccccHHHHHHHHhhCchhhhhhcccccCCcccccchhHHHHHHHHhhhccCCce
Confidence 2233566677777654444444433 23333322 2 4789999999999999
Q ss_pred EecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 527 asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
++.||+++||++++.+ .++|||+||||+-+
T Consensus 210 vGFGI~~~e~v~~~~~-~~ADGvIVGSAivk 239 (267)
T d1qopa_ 210 QGFGISSPEQVSAAVR-AGAAGAISGSAIVK 239 (267)
T ss_dssp EESSCCSHHHHHHHHH-TTCSEEEECHHHHH
T ss_pred eecccCCHHHHHHHHh-cCCCEEEECHHHHH
Confidence 9999999999998875 89999999998854
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=97.97 E-value=2.1e-05 Score=73.09 Aligned_cols=171 Identities=15% Similarity=0.129 Sum_probs=118.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++++.+.+.|++-+=|. |.. ..-++.|+++++...-.+.+| |-|.+.++ +++..+
T Consensus 21 ~~a~~~~~al~~~Gi~~iEit-lr~--------p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~-----------~~~a~~ 80 (202)
T d1wa3a1 21 EEAKEKALAVFEGGVHLIEIT-FTV--------PDADTVIKELSFLKEKGAIIGAGTVTSVEQ-----------CRKAVE 80 (202)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE-TTS--------TTHHHHHHHTHHHHHTTCEEEEESCCSHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEe-cCC--------ccHHHHHHHHHHhcCCCcEEEecccccHHH-----------HHHHHh
Confidence 467789999999999866553 322 224788888875443346677 78888765 999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.++- --+ ++++++... +++- -++.
T Consensus 81 aGa~fivs--P~~-------------~~~v~~~~~-~~~i-~~iP----------------------------------- 108 (202)
T d1wa3a1 81 SGAEFIVS--PHL-------------DEEISQFCK-EKGV-FYMP----------------------------------- 108 (202)
T ss_dssp HTCSEEEC--SSC-------------CHHHHHHHH-HHTC-EEEC-----------------------------------
T ss_pred hcccEEeC--CCC-------------cHHHHHHHH-hcCC-ceeC-----------------------------------
Confidence 99998762 111 245565554 4431 1111
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
| -.++- .+..+.++|++.+=+.....- |+ ..++.+...+ ++|+++.||| +.+++.+.++ .
T Consensus 109 -----G-----v~Tps-Ei~~A~~~G~~~lK~fPa~~~----G~--~~lk~l~~p~p~i~~iptGGI-~~~n~~~~l~-a 169 (202)
T d1wa3a1 109 -----G-----VMTPT-ELVKAMKLGHTILKLFPGEVV----GP--QFVKAMKGPFPNVKFVPTGGV-NLDNVCEWFK-A 169 (202)
T ss_dssp -----E-----ECSHH-HHHHHHHTTCCEEEETTHHHH----HH--HHHHHHHTTCTTCEEEEBSSC-CTTTHHHHHH-H
T ss_pred -----C-----cCcHH-HHHHHHHCCCCEEEecchhhc----CH--HHHHHHhCcccCCcEEeeCCC-CHHHHHHHHH-C
Confidence 1 11333 445556899999998876432 33 6788887766 6999999999 7899999996 8
Q ss_pred CchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 545 NASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
|+.+|.+||++..+. ++++++..+
T Consensus 170 ga~avg~Gs~l~~~~--~~~i~~~a~ 193 (202)
T d1wa3a1 170 GVLAVGVGSALVKGT--PDEVREKAK 193 (202)
T ss_dssp TCSCEEECHHHHCSC--HHHHHHHHH
T ss_pred CCeEEEEchhhcCCC--HHHHHHHHH
Confidence 999999999999875 456665544
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.94 E-value=8.2e-06 Score=76.04 Aligned_cols=199 Identities=15% Similarity=0.153 Sum_probs=124.1
Q ss_pred HHHHHHHHcCCCeEEEE-----ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 311 ELARQYYKEGADEISFL-----NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~-----Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
|.|+..++.|+-.++.+ |+.. .+...+.++.++|++|.+.+.+|+..--.|..+-. ++-|-.
T Consensus 12 eqA~iAe~aGAvaVmaLervpadiR~--~GGvaRm~dp~~i~ei~~~vsipvmak~righ~~e-----------aqiLe~ 78 (254)
T d1znna1 12 EQAKIAEAAGAVAVMALERVPADIRA--AGGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVE-----------ARVLEA 78 (254)
T ss_dssp HHHHHHHHHTCSEEEECC-----------CCCCCCCCHHHHHHHHHHCSSCEEEEEETTCHHH-----------HHHHHH
T ss_pred HHHHHhhccCceeEeeeccCCHHHHh--cCCcccCCCHHHHHHHHHhcccccccccCCCchHH-----------HHhHHh
Confidence 88999999999988775 3332 23346788999999999999999998888888754 777777
Q ss_pred cCcceeecc---hhhhccc--------hhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 386 SGADKISIG---SDAVYAA--------EDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 386 ~Ga~~vv~g---t~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.|.|.+.-. |.+..+. -+|+| |.++..+.++++.+ |..
T Consensus 79 ~~vd~ideseVLTpad~~~hi~k~~fkvpfVc-g~r~Lgealrri~E--gAa---------------------------- 127 (254)
T d1znna1 79 LGVDYIDESEVLTPADEEFHIDKRQFTVPFVC-GCRDLGEAARRIAE--GAS---------------------------- 127 (254)
T ss_dssp HTCSEEEEETTSCCSCSSCCCCGGGCSSCEEE-EESSHHHHHHHHHT--TCS----------------------------
T ss_pred hCCCcccHhHhcccccHHHhhcccceeeeeeC-CCCccchhHHHHHH--HHH----------------------------
Confidence 888876542 2121110 11333 22333334444433 211
Q ss_pred CCCCCCCcceEEEEEcccccCCCC-CHHHHHHHHHHcCCcEEEEec---cCCCCCCCCCCHHHHHHHHh--hCCCcEEEe
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPI-GAYELAKAVEDLGAGEILLNC---IDCDGQGKGFDMDLIKLISD--AVSIPVIAS 528 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~-~~~e~~~~~~~~G~~~ii~td---i~~dG~~~G~d~~li~~l~~--~~~ipVIas 528 (578)
.+.++|-.-..++ +....++.+.+.+.. +...+ ...-+...|..++++.++.+ .+++|+++.
T Consensus 128 -----------mIrtkGeagtgnvveav~h~R~i~~~i~~-~~~m~~~el~~~ak~lg~p~~l~~~v~~~g~l~v~~~~~ 195 (254)
T d1znna1 128 -----------MLRTKGEPGTGNIVEAVRHMRKVNAQIRK-VVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAA 195 (254)
T ss_dssp -----------EEEECCCTTSCCCHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEE
T ss_pred -----------HHHhCCccCCCcHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHhhCCchHHHHHHHHhCCCCceEEec
Confidence 3334442211121 223344445444322 11011 11223345677889988876 468999999
Q ss_pred cCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 529 SGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 529 GGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
|||+++.|...+.+ +|||||++||++.....+.+..+
T Consensus 196 ~Gi~tpadaa~~Me-lG~dgV~v~s~I~~s~dP~~~a~ 232 (254)
T d1znna1 196 GGVTTPADAALMMH-LGADGVFVGSGIFKSENPEKYAR 232 (254)
T ss_dssp SSCCSHHHHHHHHH-TTCSEEEECGGGGGSSCHHHHHH
T ss_pred CCCCChhhHHHHHH-cCCCEEEEcchhhcCCCHHHHHH
Confidence 99999999999996 99999999999987776555443
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=97.89 E-value=9.1e-06 Score=76.12 Aligned_cols=79 Identities=15% Similarity=-0.015 Sum_probs=60.7
Q ss_pred HHHHHHHHcCCCeEEEEecccCC--CCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 311 ELARQYYKEGADEISFLNITGFR--DFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~--~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
+-++...+.|++.|.+....... .+......+++.++++.+.+++||.++|||++.+| +++++++||
T Consensus 130 ~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iPVia~GGI~t~~d-----------~~~~~~~GA 198 (222)
T d1y0ea_ 130 EEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDM-----------YKRVMDLGV 198 (222)
T ss_dssp HHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHH-----------HHHHHHTTC
T ss_pred HHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcCCCcEEEeCCCCCHHH-----------HHHHHHcCC
Confidence 44667788999987654443221 12223456789999999999999999999999977 999999999
Q ss_pred ceeecchhhhccc
Q 045794 389 DKISIGSDAVYAA 401 (578)
Q Consensus 389 ~~vv~gt~~~~~~ 401 (578)
|.|++||+. .+|
T Consensus 199 dgV~iGsAi-~rp 210 (222)
T d1y0ea_ 199 HCSVVGGAI-TRP 210 (222)
T ss_dssp SEEEECHHH-HCH
T ss_pred CEEEEchhh-cCH
Confidence 999999954 444
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=97.88 E-value=5.9e-05 Score=71.04 Aligned_cols=196 Identities=16% Similarity=0.143 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+-.+..+.+.+.|++++| +|+ |+..- .+-.-..+.++.+.+.+.+|+.+===+.+.+. -++++.+
T Consensus 15 ~~l~~~i~~l~~~g~d~iH-iDImDG~Fv--pn~t~~~~~~~~i~~~t~~~~dvHLMv~~P~~----------~i~~~~~ 81 (221)
T d1tqja_ 15 SRLGEEIKAVDEAGADWIH-VDVMDGRFV--PNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK----------YVEDFAK 81 (221)
T ss_dssp GGHHHHHHHHHHTTCSEEE-EEEEBSSSS--SCBCBCHHHHHHHGGGCCSEEEEEEESSSGGG----------THHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEE-EECccCCcc--CccccCcHhHHhhhhccCcceeeeEEEeCHHH----------HHHHHhh
Confidence 3555667777888999999 565 44321 12233467888888777777766545556553 4899999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|++.+++-..+..++ ++ .+.+..+ +..|. ++-++|....
T Consensus 82 ~g~~~i~~H~E~~~~~-~~--------~~~~~~i-~~~g~-~~Gial~p~T----------------------------- 121 (221)
T d1tqja_ 82 AGADIISVHVEHNASP-HL--------HRTLCQI-RELGK-KAGAVLNPST----------------------------- 121 (221)
T ss_dssp HTCSEEEEECSTTTCT-TH--------HHHHHHH-HHTTC-EEEEEECTTC-----------------------------
T ss_pred ccceEEEEeeccccCh-hh--------HHHHHHH-HHCCC-CEEEEecCCC-----------------------------
Confidence 9999999976544321 11 1334444 45663 5566665322
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCH---HHHHHHHhh-----CCCcEEEecCCCCHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDM---DLIKLISDA-----VSIPVIASSGAGAVEHF 537 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~---~li~~l~~~-----~~ipVIasGGi~s~eDi 537 (578)
. .+.+..+.+. ++.++++.+.-.-..+.+.. +.++++++. .++++.+=|||.. +.+
T Consensus 122 -----------~---~~~l~~~l~~-~d~vlvM~V~pG~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~-~~i 185 (221)
T d1tqja_ 122 -----------P---LDFLEYVLPV-CDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNT 185 (221)
T ss_dssp -----------C---GGGGTTTGGG-CSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTT
T ss_pred -----------c---HHHHHHHHhh-hcEEEEEEecCCCCCcccchhhHHHHHHHHhhhhccccceEEEEECCcCH-HHH
Confidence 0 1122222232 79999999976445566654 444443332 3678999999954 788
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCC
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEG 573 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~ 573 (578)
.++.+ .||+.+++||+++..+ ++.+..+.|++..
T Consensus 186 ~~l~~-~Gad~~V~GS~if~~~-d~~~~i~~lr~~~ 219 (221)
T d1tqja_ 186 WQVLE-AGANAIVAGSAVFNAP-NYAEAIAGVRNSK 219 (221)
T ss_dssp HHHHH-HTCCEEEESHHHHTSS-CHHHHHHHHHTCC
T ss_pred HHHHH-cCCCEEEEChHHhCCC-CHHHHHHHHHhcc
Confidence 89885 9999999999997655 5777777777653
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.88 E-value=4.1e-05 Score=77.84 Aligned_cols=125 Identities=17% Similarity=0.184 Sum_probs=88.0
Q ss_pred HHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCC
Q 045794 377 LEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLG 456 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~ 456 (578)
.+.++.+.++|++.+++.++.-.. ..+ .+.++.+.+.+....|++ =
T Consensus 121 ~~~~~~l~~agv~vi~id~a~g~~-~~~--------~~~i~~ik~~~~~~~iIa-G------------------------ 166 (378)
T d1jr1a1 121 KYRLDLLALAGVDVVVLDSSQGNS-IFQ--------INMIKYMKEKYPNLQVIG-G------------------------ 166 (378)
T ss_dssp HHHHHHHHHHTCCEEEECCSSCCS-HHH--------HHHHHHHHHHSTTCEEEE-E------------------------
T ss_pred HHHHHHHHhhccceEeeeccCccc-hhh--------HHHHHHHHHHCCCCceee-c------------------------
Confidence 456788889999999997665542 222 266778888885443333 1
Q ss_pred CCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCC-------C-CCHHHHHH---HHhhCCCcE
Q 045794 457 PNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGK-------G-FDMDLIKL---ISDAVSIPV 525 (578)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~-------G-~d~~li~~---l~~~~~ipV 525 (578)
++...+.++.|.+.|++.|.+ .+...+-+. | |.+..+.. .+....+||
T Consensus 167 --------------------nVaT~e~a~~L~~aGAD~VkV-GiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpI 225 (378)
T d1jr1a1 167 --------------------NVVTAAQAKNLIDAGVDALRV-GMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPV 225 (378)
T ss_dssp --------------------EECSHHHHHHHHHHTCSEEEE-CSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCE
T ss_pred --------------------ccccHHHHHHHHHhCCCEEee-ccccccccccccccccCcccchhhhHHHHhhcccCCce
Confidence 223367889999999998875 333222222 3 34544444 445668999
Q ss_pred EEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 526 IASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 526 IasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
||.|||.+.-|+.+++. +|||+||+|+.|..
T Consensus 226 IADGGi~~~gdiakAla-~GAd~VMmGs~fAg 256 (378)
T d1jr1a1 226 IADGGIQNVGHIAKALA-LGASTVMMGSLLAA 256 (378)
T ss_dssp EEESCCCSHHHHHHHHH-TTCSEEEESTTTTT
T ss_pred ecccccccCCceeeEEE-eecceeeecceeee
Confidence 99999999999999995 99999999999864
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=97.82 E-value=1.3e-05 Score=82.10 Aligned_cols=126 Identities=19% Similarity=0.257 Sum_probs=91.0
Q ss_pred HHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCC
Q 045794 377 LEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLG 456 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~ 456 (578)
.+.++.|.++|+|.++|.++--.. ..+ .++++.+.+.|+.--|++
T Consensus 153 ~~ra~~L~~aG~D~ivID~AhG~s-~~~--------~~~i~~ik~~~~~v~vIa-------------------------- 197 (388)
T d1eepa_ 153 IERVEELVKAHVDILVIDSAHGHS-TRI--------IELIKKIKTKYPNLDLIA-------------------------- 197 (388)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSS-HHH--------HHHHHHHHHHCTTCEEEE--------------------------
T ss_pred HHHHHHHHhhccceeeeeccccch-HHH--------HHHHHHHHHHCCCCceee--------------------------
Confidence 577999999999999998765442 223 278889988886443333
Q ss_pred CCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCCC-CHHHHHHH---HhhCCCcEE
Q 045794 457 PNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKGF-DMDLIKLI---SDAVSIPVI 526 (578)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G~-d~~li~~l---~~~~~ipVI 526 (578)
| ++-..+.++.|.+.|++.|.+- ..++.-+.-|. -+..+..+ +....+|||
T Consensus 198 --G-----------------NV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~~vpiI 258 (388)
T d1eepa_ 198 --G-----------------NIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICII 258 (388)
T ss_dssp --E-----------------EECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEE
T ss_pred --c-----------------cccCHHHHHHHHhcCCCeeeeccccccccccccccccCcchHHHHHHHHHHhccCCceEE
Confidence 1 2334788999999999998743 22333333343 34555444 334479999
Q ss_pred EecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 527 asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+-|||++.-|+.+++. +|||+||+|++|..
T Consensus 259 ADGGi~~~Gdi~KAla-~GAd~VMlG~~lAg 288 (388)
T d1eepa_ 259 ADGGIRFSGDVVKAIA-AGADSVMIGNLFAG 288 (388)
T ss_dssp EESCCCSHHHHHHHHH-HTCSEEEECHHHHT
T ss_pred eccccCcCCceeeeEE-eccceeecchhhhc
Confidence 9999999999999995 99999999998864
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=97.71 E-value=2.2e-05 Score=73.53 Aligned_cols=81 Identities=22% Similarity=0.380 Sum_probs=70.6
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
.-+++++++.||..|.-.. +--|+.+|+ |...++.+.+..++|||+-+||+++.|..++.+ +|||||++++|+....
T Consensus 136 ~v~ak~Le~~Gc~avMPlg-sPIGSg~Gl~n~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AME-lG~daVLvNTAIA~a~ 213 (251)
T d1xm3a_ 136 VVLARKLEELGVHAIMPGA-SPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAME-LGADGVLLNTAVSGAD 213 (251)
T ss_dssp HHHHHHHHHHTCSCBEECS-SSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTSS
T ss_pred HHHHHHHHHcCChhHHHhh-hhhhcCCCcCChHHHHHHHhcCCccEEEecCCCCHHHHHHHHH-ccCCEEEechhhhcCC
Confidence 5699999999998776544 445889998 899999999999999999999999999999996 9999999999998766
Q ss_pred CCHH
Q 045794 560 VPIQ 563 (578)
Q Consensus 560 ~~~~ 563 (578)
.+..
T Consensus 214 dPv~ 217 (251)
T d1xm3a_ 214 DPVK 217 (251)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 6544
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=97.70 E-value=0.00012 Score=70.36 Aligned_cols=181 Identities=16% Similarity=0.164 Sum_probs=115.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEec---c--------------cCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCC
Q 045794 308 KPVELARQYYKEGADEISFLNI---T--------------GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl---~--------------~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~ 370 (578)
.-.++++.+.+.|+|-|=+ -+ | +...+ ..-..-+++++++++....|+.+=+..+..-+.
T Consensus 32 ~~~~~l~~l~~~G~DiiEl-GiPfSDP~aDGpvIq~a~~rAL~~G-~~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~~~- 108 (261)
T d1rd5a_ 32 TTAEALRLLDGCGADVIEL-GVPCSDPYIDGPIIQASVARALASG-TTMDAVLEMLREVTPELSCPVVLLSYYKPIMFR- 108 (261)
T ss_dssp HHHHHHHHHHHTTCSSEEE-ECCCSCCTTSCHHHHHHHHHHHTTT-CCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSC-
T ss_pred HHHHHHHHHHHcCCCEEEE-CCCCCCcCcCCcceeeeeeeccccC-cchhhhhhhhhcccccccCceeeeeeecchhhH-
Confidence 3457888888889885443 21 1 11111 122345677888888888999877776655321
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCcccccee
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAV 450 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~ 450 (578)
-++++-++|++.+++==.-++.. +.+.+.++++|-. .+.-+-
T Consensus 109 --------~~~~~~~~GvdG~IipDlp~eE~------------~~~~~~~~~~gl~-~I~lva----------------- 150 (261)
T d1rd5a_ 109 --------SLAKMKEAGVHGLIVPDLPYVAA------------HSLWSEAKNNNLE-LVLLTT----------------- 150 (261)
T ss_dssp --------CTHHHHHTTCCEEECTTCBTTTH------------HHHHHHHHHTTCE-ECEEEC-----------------
T ss_pred --------HHHHHHhcCceeeeecCccHHHH------------HHHHHHHhccccc-eEEEec-----------------
Confidence 14567789999998843333321 3345566777743 222121
Q ss_pred eeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc-CCCCCCCCC--C-HHHHHHHHhhCCCcEE
Q 045794 451 RVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI-DCDGQGKGF--D-MDLIKLISDAVSIPVI 526 (578)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi-~~dG~~~G~--d-~~li~~l~~~~~ipVI 526 (578)
..+..+.++++.+..-+.|-+... ...|..... + .+.++++++.+++||+
T Consensus 151 --------------------------Ptt~~~Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pi~ 204 (261)
T d1rd5a_ 151 --------------------------PAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVA 204 (261)
T ss_dssp --------------------------TTSCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEE
T ss_pred --------------------------cCCchhHHHHHHhcCcchhhhhhccCcccccccchhHHHHHHHHhhhccCCCeE
Confidence 223356666666664444443332 333433332 2 3688899999999999
Q ss_pred EecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 527 asGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
++-||++++|++++.+ .|+|||+|||++.
T Consensus 205 vGFGI~~~e~v~~~~~-~gaDGvIVGSaiv 233 (261)
T d1rd5a_ 205 VGFGISKPEHVKQIAQ-WGADGVIIGSAMV 233 (261)
T ss_dssp EESCCCSHHHHHHHHH-TTCSEEEECHHHH
T ss_pred EEcCCCCHHHHHHHHh-cCCCEEEECHHHH
Confidence 9999999999999985 8999999999985
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.70 E-value=3.2e-05 Score=73.05 Aligned_cols=82 Identities=16% Similarity=0.310 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
.-+++++++.|+..+. .--+--|+.+|+ +...++.+.+..++|||+.+||+++.|..++.+ +|||||+++|++....
T Consensus 138 ~v~ak~le~~Gc~~vM-plgsPIGsg~Gi~n~~~l~~i~~~~~vpvivdAGIg~psdaa~AME-lG~dgVLvnsaIa~A~ 215 (243)
T d1wv2a_ 138 PIIARQLAEIGCIAVM-PLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAME-LGCEAVLMNTAIAHAK 215 (243)
T ss_dssp HHHHHHHHHSCCSEEE-ECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHH-HTCSEEEESHHHHTSS
T ss_pred HHHHhHHHHcCceeee-ecccccccccccccHHHHHhccccCCcceEeecccCCHHHHHHHHH-ccCCEEEechHhhcCC
Confidence 5689999999997554 445667889998 888899998889999999999999999999996 9999999999998766
Q ss_pred CCHHH
Q 045794 560 VPIQS 564 (578)
Q Consensus 560 ~~~~~ 564 (578)
.+..-
T Consensus 216 dP~~m 220 (243)
T d1wv2a_ 216 DPVMM 220 (243)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 55443
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.69 E-value=0.00053 Score=64.26 Aligned_cols=193 Identities=16% Similarity=0.148 Sum_probs=125.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+..+-.+.+.+.|++++| +|+ |+..- .+-.-..+.++.+.+.+..|+.+===+.+.+. -++++.+
T Consensus 14 ~~l~~ei~~l~~~~~d~iH-iDimDg~Fv--pn~t~~~~~i~~i~~~~~~~~dvHLMv~~p~~----------~i~~~~~ 80 (220)
T d1h1ya_ 14 ANLAAEADRMVRLGADWLH-MDIMDGHFV--PNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSD----------YVEPLAK 80 (220)
T ss_dssp GGHHHHHHHHHHTTCSEEE-EEEEBSSSS--SCBCBCHHHHHHHHTTCCSEEEEEEESSCGGG----------GHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEE-EeeecCccc--cccccCchhhhhhhhhcchhhhhHHHhcchhh----------hhHHhhh
Confidence 3455666677778999999 454 44321 12344578899998877777766444455543 4889999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+|++.|.+-.++..+.. .++++.+ +..| -+.-+++....
T Consensus 81 ~g~~~I~~H~E~~~~~~----------~~~i~~i-~~~g-~~~Glal~p~t----------------------------- 119 (220)
T d1h1ya_ 81 AGASGFTFHIEVSRDNW----------QELIQSI-KAKG-MRPGVSLRPGT----------------------------- 119 (220)
T ss_dssp HTCSEEEEEGGGCTTTH----------HHHHHHH-HHTT-CEEEEEECTTS-----------------------------
T ss_pred cccceeeecccccchhH----------HHHHHHH-HHcC-CCcceeecccc-----------------------------
Confidence 99999999887765321 1345555 4455 34555554221
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHc-CCcEEEEeccCCCCCCCCCC---HHHHHHHHhhC-CCcEEEecCCCCHHHHHHH
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDL-GAGEILLNCIDCDGQGKGFD---MDLIKLISDAV-SIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~-G~~~ii~tdi~~dG~~~G~d---~~li~~l~~~~-~ipVIasGGi~s~eDi~~l 540 (578)
+ +.++...+... .++.++++.+.-....+.++ ++.++++++.. ++++.+=|||. .+.+..+
T Consensus 120 -----------~--~~~~~~~l~~~~~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~~~~~~I~VDGGIn-~~~i~~l 185 (220)
T d1h1ya_ 120 -----------P--VEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLG-PSTIDVA 185 (220)
T ss_dssp -----------C--GGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCS-TTTHHHH
T ss_pred -----------c--hhHHHHHHhcccccceEEEEecCCCCcccccchhhhHHHHHHHhcCCCceEEEEecCC-HHHHHHH
Confidence 1 11222223332 37899999998777777776 45556665533 68999999995 4789999
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
.+ .||+.+++||++...+ ++.+..+.|
T Consensus 186 ~~-aGad~~V~GS~if~~~-d~~~~i~~l 212 (220)
T d1h1ya_ 186 AS-AGANCIVAGSSIFGAA-EPGEVISAL 212 (220)
T ss_dssp HH-HTCCEEEESHHHHTSS-CHHHHHHHH
T ss_pred HH-CCCCEEEECHHHHCCC-CHHHHHHHH
Confidence 85 9999999999987654 444443333
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=97.64 E-value=0.0016 Score=61.46 Aligned_cols=175 Identities=18% Similarity=0.140 Sum_probs=120.3
Q ss_pred HHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChH------HHHHHH
Q 045794 311 ELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSL------EVASEY 383 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~------~~~~~~ 383 (578)
+=|..-.+.||++|-+. +|.- +| -.+...+|+.+.+.+.+||.+ =||--. -.|+|+.. ++++.+
T Consensus 11 ~~a~~A~~~GAdRIELc~~l~~--GG---lTPS~g~i~~~~~~~~iPv~v--MIRPR~--GdF~Ys~~E~~~M~~di~~~ 81 (247)
T d1twda_ 11 ECALTAQQNGADRVELCAAPKE--GG---LTPSLGVLKSVRQRVTIPVHP--IIRPRG--GDFCYSDGEFAAILEDVRTV 81 (247)
T ss_dssp HHHHHHHHTTCSEEEECBCGGG--TC---BCCCHHHHHHHHHHCCSCEEE--BCCSSS--SCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCCccc--CC---CCCCHHHHHHHHHhcCCCeEE--EEecCC--CCCCCCHHHHHHHHHHHHHH
Confidence 45566678899999985 5543 22 266789999999999999987 455321 24888764 467888
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYA 463 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (578)
.++|++.||+|...-+ ...+.+.++++.+.-++-.+++
T Consensus 82 k~~G~dGvV~G~L~~d---------g~iD~~~~~~L~~~a~~l~vTF--------------------------------- 119 (247)
T d1twda_ 82 RELGFPGLVTGVLDVD---------GNVDMPRMEKIMAAAGPLAVTF--------------------------------- 119 (247)
T ss_dssp HHTTCSEEEECCBCTT---------SSBCHHHHHHHHHHHTTSEEEE---------------------------------
T ss_pred HHcCCCeEEEEEECCC---------CCccHHHHHHHHHHhcccCeee---------------------------------
Confidence 8999999999974433 2456788888887665433433
Q ss_pred eEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHH
Q 045794 464 WYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~ 542 (578)
|-..... .++.+.++.+.++|+++|+-..=.. ... -.++.|+++.+.. ..-|+++|||.. +.+..+.+
T Consensus 120 ------HRAfD~~-~d~~~al~~Li~lG~~rILTSGg~~-~a~--~G~~~L~~L~~~a~~~iIm~GgGI~~-~Ni~~l~~ 188 (247)
T d1twda_ 120 ------HRAFDMC-ANPLYTLNNLAELGIARVLTSGQKS-DAL--QGLSKIMELIAHRDAPIIMAGAGVRA-ENLHHFLD 188 (247)
T ss_dssp ------CGGGGGC-SCHHHHHHHHHHHTCCEEEECTTSS-STT--TTHHHHHHHHTSSSCCEEEEESSCCT-TTHHHHHH
T ss_pred ------ehhhhhh-CCHHHHHHHHHhcCCCeEeccCCCC-chh--HHHHHHHHHHHhcCCcEEEecCCCCH-HHHHHHHH
Confidence 2222222 3688999999999999998554221 111 2478888887654 334788999854 77888885
Q ss_pred hcCchH
Q 045794 543 KTNASA 548 (578)
Q Consensus 543 ~~G~~g 548 (578)
+|+..
T Consensus 189 -~g~~e 193 (247)
T d1twda_ 189 -AGVLE 193 (247)
T ss_dssp -HTCSE
T ss_pred -cCCCE
Confidence 77664
|
| >d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Intracellular protease species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.61 E-value=2.7e-05 Score=69.85 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=59.0
Q ss_pred cEEEEEECC-CC--CHHHHHHHHHHCCCeEEEeCCc------------------cC--CCCCCEEEECCCCCchHHHHHH
Q 045794 48 SVVTLLDYG-AG--NVRSVRNAIRHLGFGIKDVQTP------------------ED--ILNANRLIFPGVGAFAAAMDVL 104 (578)
Q Consensus 48 ~~I~vld~~-~g--~~~~i~~~L~~~Gv~v~~v~~~------------------~d--l~~~DGlILpGGg~~~~~~~~l 104 (578)
++|+|+=++ .. -.....+.|++.|+++.++... ++ ..+||+||+|||..+. ...
T Consensus 1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~~~~---~~~ 77 (166)
T d1g2ia_ 1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPE---RVR 77 (166)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHH---HHT
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCceEeecCCcEEeccccHHHcCcccccEEEEecccchh---hhc
Confidence 356666432 11 1223457889999999887532 11 3579999999985221 111
Q ss_pred HhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 105 NKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 105 ~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
....+.++++++.++++||.+||-|-.+|+.+
T Consensus 78 ~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 109 (166)
T d1g2ia_ 78 LNEKAVSIARKMFSEGKPVASICHGPQILISA 109 (166)
T ss_dssp TCHHHHHHHHHHHHTTCCEEEETTTTHHHHHH
T ss_pred cChHHHHHHHHHHhcCCeeeeccccchhhhhc
Confidence 22357789999999999999999999999983
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=97.59 E-value=0.00038 Score=65.28 Aligned_cols=195 Identities=13% Similarity=0.054 Sum_probs=119.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEec-ccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNI-TGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl-~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+-.+..+.+.+.|+++|| +|+ |+..- .+-.-..+.++++.+.. .+|+.+===+.+.+. -++.+.
T Consensus 15 ~~l~~~i~~l~~~~~d~iH-iDimDG~Fv--pn~t~g~~~v~~i~~~~~~~~~dvHLMv~~P~~----------~i~~~~ 81 (221)
T d1tqxa_ 15 SKLAEETQRMESLGAEWIH-LDVMDMHFV--PNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEK----------YVPLLK 81 (221)
T ss_dssp GGHHHHHHHHHHTTCSEEE-EEEEBSSSS--SCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGG----------GGGGCT
T ss_pred HHHHHHHHHHHHcCCCEEE-EECccCcCc--CccccChHHHhhhhhcCCchhhhhhHHhhhhhh----------hhhhhh
Confidence 3555667778888999999 565 44211 11122356788887754 577766555666654 255666
Q ss_pred HcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcce
Q 045794 385 RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAW 464 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (578)
++|++.+.+-+.... .++.. +.++++ ++.|. ++-+++....
T Consensus 82 ~~~~~~i~~~~~~~~-~~~~~--------~~i~~i-~~~g~-~~Gial~p~t---------------------------- 122 (221)
T d1tqxa_ 82 TSNQLTFHFEALNED-TERCI--------QLAKEI-RDNNL-WCGISIKPKT---------------------------- 122 (221)
T ss_dssp TSSEEEEEGGGGTTC-HHHHH--------HHHHHH-HTTTC-EEEEEECTTS----------------------------
T ss_pred hcCceeEEeehhccc-cchhh--------HHHHHH-HhcCC-eEEEeecccc----------------------------
Confidence 788887776443322 11111 334444 44553 4555554221
Q ss_pred EEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCC---HHHHHHHHhhC-CCcEEEecCCCCHHHHHHH
Q 045794 465 YQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFD---MDLIKLISDAV-SIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 465 ~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d---~~li~~l~~~~-~ipVIasGGi~s~eDi~~l 540 (578)
++..+...+....++.++++.+.-....+.++ ++-++++++.. ++.+.+=||| +.+.+..+
T Consensus 123 --------------~~~~~~~~l~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~~~~~I~VDGGI-n~~~i~~l 187 (221)
T d1tqxa_ 123 --------------DVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGL-NIETTEIS 187 (221)
T ss_dssp --------------CGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSC-CHHHHHHH
T ss_pred --------------ccccchhhcccccccEEEEEeecccccccccCcchhHHHHHHHHhcCCcceEEEccc-CHHhHHHH
Confidence 12223333333458999999997755566665 45566666554 6889999999 56889999
Q ss_pred HHhcCchHHhhhhhhccCCCCHHHHHHHHH
Q 045794 541 FRKTNASAALAAGIFHRKEVPIQSVKEHLY 570 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~ 570 (578)
.+ .||+.+++||++...+ ++.+..+.|+
T Consensus 188 ~~-aGad~iV~GS~if~~~-d~~~~i~~Lr 215 (221)
T d1tqxa_ 188 AS-HGANIIVAGTSIFNAE-DPKYVIDTMR 215 (221)
T ss_dssp HH-HTCCEEEESHHHHTCS-SHHHHHHHHH
T ss_pred HH-cCCCEEEEChHHHCCC-CHHHHHHHHH
Confidence 85 9999999999998655 4444444443
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=97.57 E-value=0.00038 Score=64.72 Aligned_cols=173 Identities=13% Similarity=0.162 Sum_probs=118.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++++.+.+.|++-|=|. ++. ..-++.|++++++.. -+.+| |.|.+.++ ++++.+
T Consensus 26 ~~~~~~~~al~~~Gi~~iEit-l~~--------~~a~~~I~~l~~~~p-~~~vGaGTV~~~~~-----------~~~a~~ 84 (212)
T d1vhca_ 26 DDILPLADTLAKNGLSVAEIT-FRS--------EAAADAIRLLRANRP-DFLIAAGTVLTAEQ-----------VVLAKS 84 (212)
T ss_dssp GGHHHHHHHHHHTTCCEEEEE-TTS--------TTHHHHHHHHHHHCT-TCEEEEESCCSHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEe-CCC--------hhHHHHHHHHHhcCC-CceEeeeecccHHH-----------HHHHHh
Confidence 578899999999999866654 322 224788999987764 36677 77888765 999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.++-=. + ++++++.. .+++- -.
T Consensus 85 aGa~FivSP~--~-------------~~~v~~~a-~~~~i-~~------------------------------------- 110 (212)
T d1vhca_ 85 SGADFVVTPG--L-------------NPKIVKLC-QDLNF-PI------------------------------------- 110 (212)
T ss_dssp HTCSEEECSS--C-------------CHHHHHHH-HHTTC-CE-------------------------------------
T ss_pred hCCcEEECCC--C-------------CHHHHHHH-HhcCC-Cc-------------------------------------
Confidence 9999876521 1 24556554 44431 01
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
+.| -.++ ..+..+.++|++.+=+...+.- .|+ ..++.+..-. ++|++..||| +.+++.+.++ .
T Consensus 111 ---iPG-----v~Tp-sEi~~A~~~G~~~vK~FPA~~~---gG~--~~lkal~~p~p~~~~~ptGGV-~~~N~~~yl~-~ 174 (212)
T d1vhca_ 111 ---TPG-----VNNP-MAIEIALEMGISAVKFFPAEAS---GGV--KMIKALLGPYAQLQIMPTGGI-GLHNIRDYLA-I 174 (212)
T ss_dssp ---ECE-----ECSH-HHHHHHHHTTCCEEEETTTTTT---THH--HHHHHHHTTTTTCEEEEBSSC-CTTTHHHHHT-S
T ss_pred ---cCC-----cCCH-HHHHHHHHCCCCEEEEcccccc---chH--HHHHHHhccccCCeEEecCCC-CHHHHHHHHh-C
Confidence 111 1133 3455677899999999887533 233 5678887766 6999999999 5699999995 8
Q ss_pred CchHHhhhhhhccCCC----CHHHHHHHHH
Q 045794 545 NASAALAAGIFHRKEV----PIQSVKEHLY 570 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~----~~~~~~~~l~ 570 (578)
|+.++..||.+..+.+ +++++++..+
T Consensus 175 g~v~~~~Gs~l~~~~~i~~~d~~~i~~~a~ 204 (212)
T d1vhca_ 175 PNIVACGGSWFVEKKLIQSNNWDEIGRLVR 204 (212)
T ss_dssp TTBCCEEECGGGCHHHHHTTCHHHHHHHHH
T ss_pred CCEEEEEChhhCCHHHHhcCCHHHHHHHHH
Confidence 8888888887764322 3556655544
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=0.00051 Score=63.81 Aligned_cols=173 Identities=13% Similarity=0.156 Sum_probs=118.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++++.+.+.|++-|=|.- +. ..-++.|++++++.. -+.+| |.|.+.++ ++++.+
T Consensus 27 ~~a~~~~~al~~~Gi~~iEitl-~t--------p~a~~~I~~l~~~~p-~~~vGaGTV~~~~~-----------~~~a~~ 85 (213)
T d1wbha1 27 EHAVPMAKALVAGGVRVLNVTL-RT--------ECAVDAIRAIAKEVP-EAIVGAGTVLNPQQ-----------LAEVTE 85 (213)
T ss_dssp GGHHHHHHHHHHTTCCEEEEES-CS--------TTHHHHHHHHHHHCT-TSEEEEESCCSHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEeC-CC--------hhHHHHHHHHHHHCC-CCeeeccccccHHH-----------HHHHHH
Confidence 4778999999999998665542 22 223789999998764 25677 77888765 999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.++-=. + ++++++.. .+.+- -.+
T Consensus 86 aGa~FivSP~--~-------------~~~v~~~a-~~~~i-~~i------------------------------------ 112 (213)
T d1wbha1 86 AGAQFAISPG--L-------------TEPLLKAA-TEGTI-PLI------------------------------------ 112 (213)
T ss_dssp HTCSCEEESS--C-------------CHHHHHHH-HHSSS-CEE------------------------------------
T ss_pred CCCcEEECCC--C-------------CHHHHHHH-HhcCC-Ccc------------------------------------
Confidence 9999776522 1 23556554 44431 111
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
.| -.++-| +..+.++|++.+=+...+.-| | ...++.++.-. ++++++.|||. .+++.+.++ .
T Consensus 113 ----PG-----v~TpsE-i~~A~~~G~~~vKlFPA~~~G---g--~~~lkal~~p~p~~~~~ptGGV~-~~n~~~yl~-~ 175 (213)
T d1wbha1 113 ----PG-----ISTVSE-LMLGMDYGLKEFKFFPAEANG---G--VKALQAIAGPFSQVRFCPTGGIS-PANYRDYLA-L 175 (213)
T ss_dssp ----EE-----ESSHHH-HHHHHHTTCCEEEETTTTTTT---H--HHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHT-S
T ss_pred ----CC-----cCCHHH-HHHHHHCCCCEEEeccchhcC---h--HHHHHHhcCcccCCceeeeCCCC-HHHHHHHHh-C
Confidence 11 123344 455778999999999875443 1 35677777755 78999999995 689999985 8
Q ss_pred CchHHhhhhhhccCCC----CHHHHHHHHH
Q 045794 545 NASAALAAGIFHRKEV----PIQSVKEHLY 570 (578)
Q Consensus 545 G~~gv~vgsa~~~~~~----~~~~~~~~l~ 570 (578)
|+.++..||.+..+.+ +++++.+..+
T Consensus 176 g~v~~~~Gs~l~~~~~i~~~d~~~i~~~a~ 205 (213)
T d1wbha1 176 KSVLCIGGSWLVPADALEAGDYDRITKLAR 205 (213)
T ss_dssp TTBSCEEEGGGSCHHHHHHTCHHHHHHHHH
T ss_pred CCEEEEEChhhCChhhhhcCCHHHHHHHHH
Confidence 9999988998865543 3455555444
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=0.00027 Score=70.52 Aligned_cols=87 Identities=18% Similarity=0.163 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccC--------CCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHh
Q 045794 479 GAYELAKAVEDLGAGEILLNCID--------CDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAAL 550 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~--------~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~ 550 (578)
+..++++.+++.|++.+-+..-. ......|......+++++.+++|||+.|++.+++++.+++++..||.|.
T Consensus 229 ~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~ 308 (330)
T d1ps9a1 229 ETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVS 308 (330)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHHHHHHHCCCcchhH
Confidence 35788899999999988765321 1122335566788899999999999999999999999999855599999
Q ss_pred hhhhhccCCCCHHHH
Q 045794 551 AAGIFHRKEVPIQSV 565 (578)
Q Consensus 551 vgsa~~~~~~~~~~~ 565 (578)
+|+++...+.-...+
T Consensus 309 ~gR~~iadP~~~~k~ 323 (330)
T d1ps9a1 309 MARPFLADAELLSKA 323 (330)
T ss_dssp ESTHHHHCTTHHHHH
T ss_pred hhHHHHhChhHHHHH
Confidence 999998877544443
|
| >d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein YhbO species: Escherichia coli [TaxId: 562]
Probab=97.53 E-value=0.0001 Score=66.40 Aligned_cols=85 Identities=16% Similarity=0.333 Sum_probs=59.4
Q ss_pred EEEEEECC---CCCHHHHHHHHHHCCCeEEEeCCc--------------------cC--CCCCCEEEECCCCCchHHHHH
Q 045794 49 VVTLLDYG---AGNVRSVRNAIRHLGFGIKDVQTP--------------------ED--ILNANRLIFPGVGAFAAAMDV 103 (578)
Q Consensus 49 ~I~vld~~---~g~~~~i~~~L~~~Gv~v~~v~~~--------------------~d--l~~~DGlILpGGg~~~~~~~~ 103 (578)
+|+|+=++ ..-.....+.|++.|+++.++... ++ ..+||+||+|||... . ..
T Consensus 3 kIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~~~--~-~l 79 (170)
T d1oi4a1 3 KIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSP--D-YL 79 (170)
T ss_dssp EEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHH--H-HH
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccchhh--h-hh
Confidence 47777443 112334567899999998776421 11 357899999998421 1 11
Q ss_pred HHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 104 LNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 104 l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.....+.++++++.+.++||.+||-|-.+|+.+
T Consensus 80 ~~~~~~~~~i~~~~~~~k~i~aiC~g~~~La~~ 112 (170)
T d1oi4a1 80 RGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 112 (170)
T ss_dssp TTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred ccChHHHHHHHHHhhcCCeeeecccchHHHhhh
Confidence 223357789999999999999999999999983
|
| >d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Catalase, C-terminal domain domain: Catalase, C-terminal domain species: Escherichia coli, HPII [TaxId: 562]
Probab=97.49 E-value=9.7e-05 Score=65.53 Aligned_cols=85 Identities=14% Similarity=0.111 Sum_probs=60.8
Q ss_pred cEEEEEECC-C--CCHHHHHHHHHHCCCeEEEeCCc------------------c--CCCCCCEEEECCCCCchHHHHHH
Q 045794 48 SVVTLLDYG-A--GNVRSVRNAIRHLGFGIKDVQTP------------------E--DILNANRLIFPGVGAFAAAMDVL 104 (578)
Q Consensus 48 ~~I~vld~~-~--g~~~~i~~~L~~~Gv~v~~v~~~------------------~--dl~~~DGlILpGGg~~~~~~~~l 104 (578)
++|+|+=++ . .-...+.+.|++.|+++.++... . ....||+||+|||.. ..+.
T Consensus 4 rkVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~~--~~l~-- 79 (156)
T d1p80a1 4 RVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNI--ADIA-- 79 (156)
T ss_dssp CEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCSCT--HHHH--
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecccccccccceeEEeeeeeeccCCcccCCEEEeeCCch--HHHh--
Confidence 468888543 1 13445778999999998876431 0 124699999999853 2221
Q ss_pred HhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 105 NKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 105 ~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
......++++++.+.++||-+||-|.++|+.+
T Consensus 80 ~~~~~~~~i~e~~~~~K~I~aic~g~~~La~a 111 (156)
T d1p80a1 80 DNGDANYYLMEAYKHLKPIALAGDARKFKATI 111 (156)
T ss_dssp TCHHHHHHHHHHHHTTCCEEEEGGGGGGGGTT
T ss_pred cchHHHHHHHHHHHcCCeEEEECchHHHHHHc
Confidence 12246789999999999999999999999984
|
| >d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Catalase, C-terminal domain domain: Catalase, C-terminal domain species: Neurospora crassa [TaxId: 5141]
Probab=97.49 E-value=5.7e-05 Score=68.61 Aligned_cols=87 Identities=9% Similarity=-0.017 Sum_probs=60.6
Q ss_pred cEEEEEECC-C--CCHHHHHHHHHHCCCeEEEeCCc------------------c--CCCCCCEEEECCCCCchHHHHHH
Q 045794 48 SVVTLLDYG-A--GNVRSVRNAIRHLGFGIKDVQTP------------------E--DILNANRLIFPGVGAFAAAMDVL 104 (578)
Q Consensus 48 ~~I~vld~~-~--g~~~~i~~~L~~~Gv~v~~v~~~------------------~--dl~~~DGlILpGGg~~~~~~~~l 104 (578)
++|+|+=++ . .-+....+.|++.|+++.++... . ...+||++++|||........
T Consensus 4 rkI~ilv~dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~~~~~-- 81 (184)
T d1sy7a1 4 RRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLS-- 81 (184)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHH--
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHCCCEEEEEEecCCcccccccccccccccccccccccceEEEEeeccccccccc--
Confidence 458887553 1 12334577899999999887431 0 124689999999752221111
Q ss_pred HhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 105 NKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 105 ~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
....+.++++++.+.++||.+||-|-++|+.+
T Consensus 82 ~~~~~~~~l~~~~~~~k~i~aic~G~~~La~a 113 (184)
T d1sy7a1 82 KNGRALHWIREAFGHLKAIGATGEAVDLVAKA 113 (184)
T ss_dssp TCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred cccchhHHHHHHHhcCCceEEechHHHHHHHc
Confidence 12256789999999999999999999999994
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=97.45 E-value=0.0017 Score=60.73 Aligned_cols=87 Identities=14% Similarity=0.220 Sum_probs=64.1
Q ss_pred HHHHHHHHcCCcEEEEeccCCCCCCCCCC---HH----HHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCchHHhhhh
Q 045794 482 ELAKAVEDLGAGEILLNCIDCDGQGKGFD---MD----LIKLISDA-VSIPVIASSGAGAVEHFSDVFRKTNASAALAAG 553 (578)
Q Consensus 482 e~~~~~~~~G~~~ii~tdi~~dG~~~G~d---~~----li~~l~~~-~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgs 553 (578)
...+.+.+.+...|.|-.+..-|+..... .+ .++.+.+. -++||+++|||.+.+|...+.+ .|+||++||+
T Consensus 127 ~~~~~~~~~~~~iiAyEpvwaIGtg~~~~~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~~~-~g~dGvLVGs 205 (224)
T d1hg3a_ 127 AVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIE-LGTVGVLLAS 205 (224)
T ss_dssp HHHHHHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH-TTCSEEEESH
T ss_pred HHHHhhhhcccceEEecchHhhccccCCCchhhhhhhhhhhhhhhhccccceEEeCCcCCHHHHHHHHh-CCCCEEEEcc
Confidence 34556677788888888888888876643 33 33333332 2689999999999999999985 8999999999
Q ss_pred hhccCCCCHHHHHHHH
Q 045794 554 IFHRKEVPIQSVKEHL 569 (578)
Q Consensus 554 a~~~~~~~~~~~~~~l 569 (578)
|....+-..+.+++..
T Consensus 206 Asl~a~d~~~~~~~l~ 221 (224)
T d1hg3a_ 206 GVTKAKDPEKAIWDLV 221 (224)
T ss_dssp HHHTCSSHHHHHHHHH
T ss_pred eeecCcCHHHHHHHHH
Confidence 9987766555555444
|
| >d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: DJ-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.00014 Score=66.22 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=53.3
Q ss_pred HHHHHHHHCCCeEEEeCCc-------------------cC---CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhC
Q 045794 62 SVRNAIRHLGFGIKDVQTP-------------------ED---ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEK 119 (578)
Q Consensus 62 ~i~~~L~~~Gv~v~~v~~~-------------------~d---l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~ 119 (578)
...+.|++.|+++.++... ++ ..+||+|++|||......+. ....+.++++++.++
T Consensus 19 ~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~~~l~--~~~~l~~~lr~~~~~ 96 (186)
T d1p5fa_ 19 IPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLS--ESAAVKEILKEQENR 96 (186)
T ss_dssp HHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHHHHHH--HCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCcccccccc--chHHHHHHHHHhhcc
Confidence 3467899999999887421 01 14799999999742122221 223577899999999
Q ss_pred CCCEEEEechHHHHhhh
Q 045794 120 DRPFLGICLGLQLLFQS 136 (578)
Q Consensus 120 g~PIlGIClG~QlLa~a 136 (578)
++||.+||-|..+|+.+
T Consensus 97 ~k~i~aiC~G~~~La~a 113 (186)
T d1p5fa_ 97 KGLIAAICAGPTALLAH 113 (186)
T ss_dssp TCEEEEETTTHHHHHHT
T ss_pred ccceeecccCcchhhhc
Confidence 99999999999999983
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=97.36 E-value=0.00053 Score=68.43 Aligned_cols=90 Identities=10% Similarity=0.063 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCC----CCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhh
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCD----GQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~d----G~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa 554 (578)
+..++++.+++.|++.+-+..-... ....|...++.+.+++.+++||++.|++.++++..+++++..||.|.+|++
T Consensus 229 ~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~ 308 (337)
T d1z41a1 229 DHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRE 308 (337)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHH
T ss_pred hhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceehhhHH
Confidence 3578999999999998887643321 123477889999999999999999999999999999997555999999999
Q ss_pred hccCCCCHHHHHHH
Q 045794 555 FHRKEVPIQSVKEH 568 (578)
Q Consensus 555 ~~~~~~~~~~~~~~ 568 (578)
+...+.-...+++-
T Consensus 309 ~iadPd~~~k~~~~ 322 (337)
T d1z41a1 309 LLRDPFFARTAAKQ 322 (337)
T ss_dssp HHHCTTHHHHHHHH
T ss_pred HHhCchHHHHHHhh
Confidence 98888655555544
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=97.32 E-value=0.00078 Score=63.26 Aligned_cols=86 Identities=17% Similarity=0.264 Sum_probs=65.0
Q ss_pred HHHHHHHcCCcEEEEeccCCCCCCCCCCH---HH----HHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhh
Q 045794 483 LAKAVEDLGAGEILLNCIDCDGQGKGFDM---DL----IKLISDA-VSIPVIASSGAGAVEHFSDVFRKTNASAALAAGI 554 (578)
Q Consensus 483 ~~~~~~~~G~~~ii~tdi~~dG~~~G~d~---~l----i~~l~~~-~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa 554 (578)
...+..+.+...|.|-.+..-|+...+.. +. ++.+.+. .++||+++|||.+.++...+.+ .|+||++||+|
T Consensus 126 ~~~~~~~~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~~-~g~dGvLVGsA 204 (226)
T d1w0ma_ 126 TSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALR-LGTRGVLLASA 204 (226)
T ss_dssp HHHHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH-TTCSEEEECHH
T ss_pred HhhhhhccccceeeecchhhccCCCCCChhhhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHhc-CCCCEEEechh
Confidence 44566788888999999988888877643 32 3333333 3799999999999999999985 89999999999
Q ss_pred hccCCCCHHHHHHHH
Q 045794 555 FHRKEVPIQSVKEHL 569 (578)
Q Consensus 555 ~~~~~~~~~~~~~~l 569 (578)
+...+-.+..+++..
T Consensus 205 ~l~a~d~~~~i~~l~ 219 (226)
T d1w0ma_ 205 AVKAKDPYAKIVELA 219 (226)
T ss_dssp HHTCSSHHHHHHHHH
T ss_pred eecCCCHHHHHHHHH
Confidence 987766555554443
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=97.26 E-value=0.0001 Score=75.85 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCC-----------CCCCCC-----CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCD-----------GQGKGF-----DMDLIKLISDAV--SIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~d-----------G~~~G~-----d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l 540 (578)
.+.++++.+.+.|++.+++++.... |-++|+ -+..++++.+.+ ++|||+.|||.+.+|+.+.
T Consensus 281 ~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~ 360 (409)
T d1tv5a1 281 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEK 360 (409)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHH
T ss_pred hhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHH
Confidence 3689999999999999998875432 223332 256778888877 4999999999999999999
Q ss_pred HHhcCchHHhhhhhh-ccCCCCH----HHHHHHHHhCCC
Q 045794 541 FRKTNASAALAAGIF-HRKEVPI----QSVKEHLYKEGI 574 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~-~~~~~~~----~~~~~~l~~~~i 574 (578)
+. +||+.|.++|++ +.|+-.+ ++++++|++.|+
T Consensus 361 i~-AGAs~VQv~T~li~~Gp~~v~~I~~~L~~~l~~~g~ 398 (409)
T d1tv5a1 361 IE-AGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGY 398 (409)
T ss_dssp HH-TTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHHTC
T ss_pred HH-cCCCHHhhhhHHHhcChHHHHHHHHHHHHHHHHcCC
Confidence 96 999999999986 6666544 556667777775
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=97.25 E-value=0.0004 Score=70.04 Aligned_cols=128 Identities=23% Similarity=0.249 Sum_probs=86.7
Q ss_pred HHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCC
Q 045794 377 LEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLG 456 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~ 456 (578)
.+.++.+.++|++.+++.++--.. ..+ .+.++.+.+.+++...+++=
T Consensus 112 ~~~~~~L~~ag~d~i~IDvAhG~~-~~v--------~~~i~~ir~~~~~~~~IiAG------------------------ 158 (362)
T d1pvna1 112 RERVPALVEAGADVLCIDSSDGFS-EWQ--------KITIGWIREKYGDKVKVGAG------------------------ 158 (362)
T ss_dssp HHHHHHHHHHTCSEEEECCSCCCB-HHH--------HHHHHHHHHHHGGGSCEEEE------------------------
T ss_pred HHHHHHHhhcCceEEeechhccch-hHH--------HHHHHHHHHhhccceeeecc------------------------
Confidence 467889999999999997654442 222 26777887777544323211
Q ss_pred CCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCC-CCHHHHHHHHhh---------
Q 045794 457 PNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKG-FDMDLIKLISDA--------- 520 (578)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G-~d~~li~~l~~~--------- 520 (578)
++-..+.++.|.+.|++.|.+= ..++.-+.-| |-+..+.+++++
T Consensus 159 --------------------NVaT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG~Pq~sAv~e~a~~~~~~~~~~~ 218 (362)
T d1pvna1 159 --------------------NIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETG 218 (362)
T ss_dssp --------------------EECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHTCBCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred --------------------cccCHHHHHHHHHhCCcEEEecccccccccchhhhccCCchHHHHHHHHHHHHHhhhhcc
Confidence 1223577888999999987742 1222223333 244555444322
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 521 VSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 521 ~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
..+|||+-|||++.-|+.+++. +|||.||+|+.|...
T Consensus 219 ~~v~iiaDGGi~~~gdi~KAla-~GAd~VM~G~~lAg~ 255 (362)
T d1pvna1 219 IYIPVCSDGGIVYDYHMTLALA-MGADFIMLGRYFARF 255 (362)
T ss_dssp EECCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTB
T ss_pred cCCceeeccccCcccceeEEEE-Eeccceeehhhhhcc
Confidence 2589999999999999999995 999999999998643
|
| >d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein Atu0886 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.24 E-value=0.00037 Score=63.64 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=52.5
Q ss_pred HHHHHHHHHH-CCCeEEEeCCc------------------cC--CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHh
Q 045794 60 VRSVRNAIRH-LGFGIKDVQTP------------------ED--ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIE 118 (578)
Q Consensus 60 ~~~i~~~L~~-~Gv~v~~v~~~------------------~d--l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~ 118 (578)
...+...|+. .|+++.++... ++ ..+||+||+|||.... ......+.++++++.+
T Consensus 17 ~~~~~~~l~~~~g~~v~~vs~~~~~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~~~----~~~~~~l~~~lr~~~~ 92 (188)
T d2fexa1 17 PALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWE----KGTAADLGGLVKRFRD 92 (188)
T ss_dssp SHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHH----HTCCCCCHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcEEEEEeCCCCcEEcCCCCEEeecCchHHCChhhccEEEecCCcccc----ccccHHHHHHHHHHHH
Confidence 3455667764 79998886432 11 3579999999975211 1112357789999999
Q ss_pred CCCCEEEEechHHHHhh
Q 045794 119 KDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 119 ~g~PIlGIClG~QlLa~ 135 (578)
.++||.+||-|-.+|+.
T Consensus 93 ~~~~i~aiC~g~~~La~ 109 (188)
T d2fexa1 93 RDRLVAGICAAASALGG 109 (188)
T ss_dssp TTCEEEEETHHHHHHHH
T ss_pred hCCEEEEecchhHHHHH
Confidence 99999999999999998
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.23 E-value=0.00029 Score=65.92 Aligned_cols=76 Identities=12% Similarity=-0.046 Sum_probs=54.1
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcce
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~ 390 (578)
+-++...+.|++.|.+--....... .........+.++....++|+.++|||++.+| +.+++++|||-
T Consensus 141 ~~a~~a~~~Gad~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ipvia~GGI~t~~d-----------~~~al~~GAd~ 208 (230)
T d1yxya1 141 DEGLVAHQAGIDFVGTTLSGYTPYS-RQEAGPDVALIEALCKAGIAVIAEGKIHSPEE-----------AKKINDLGVAG 208 (230)
T ss_dssp HHHHHHHHTTCSEEECTTTTSSTTS-CCSSSCCHHHHHHHHHTTCCEEEESCCCSHHH-----------HHHHHTTCCSE
T ss_pred HHHHHHHhcCCCEEEeecccccccc-cccchHHHHHHHHHhcCCCeEEEeCCCCCHHH-----------HHHHHHcCCCE
Confidence 5577778999997654333332111 11122233456666678999999999999977 99999999999
Q ss_pred eecchhhh
Q 045794 391 ISIGSDAV 398 (578)
Q Consensus 391 vv~gt~~~ 398 (578)
|++||+..
T Consensus 209 V~vGsAi~ 216 (230)
T d1yxya1 209 IVVGGAIT 216 (230)
T ss_dssp EEECHHHH
T ss_pred EEEChhhc
Confidence 99999654
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.23 E-value=0.0012 Score=65.77 Aligned_cols=87 Identities=15% Similarity=0.026 Sum_probs=66.6
Q ss_pred HHHHHHHHHHcCCcEEEEeccC--C--------CCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHH
Q 045794 480 AYELAKAVEDLGAGEILLNCID--C--------DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAA 549 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~--~--------dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv 549 (578)
....+..+.+.+++.+-++..+ . .....|..+++.+.+++.+++|||+.||+.+++++.+++++..||.|
T Consensus 239 ~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l~~G~aDlV 318 (340)
T d1djqa1 239 DGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADII 318 (340)
T ss_dssp HHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHHHHHHHHTTSCSBE
T ss_pred hHHHHHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHCCCccch
Confidence 3456677888899887654321 1 11235668888999999999999999999999999999974459999
Q ss_pred hhhhhhccCCCCHHHHH
Q 045794 550 LAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 550 ~vgsa~~~~~~~~~~~~ 566 (578)
.+|+++...+.-...++
T Consensus 319 ~~gR~~iadPdl~~k~~ 335 (340)
T d1djqa1 319 GCARPSIADPFLPQKVE 335 (340)
T ss_dssp EESHHHHHCTTHHHHHH
T ss_pred hhHHHHHHCccHHHHHH
Confidence 99999988876554443
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=97.23 E-value=0.00041 Score=66.85 Aligned_cols=83 Identities=24% Similarity=0.217 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..|.+..+...+..-..||++-..|..+.... .....+.|+++++.+++||.+|-||++.|| ++++++
T Consensus 157 tt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~-----------v~~~~~ 225 (267)
T d1qopa_ 157 NADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQ-----------VSAAVR 225 (267)
T ss_dssp TCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHH-----------HHHHHH
T ss_pred cccHHHHHHHHhhCchhhhhhcccccCCcccccchhHHHHHHHHhhhccCCceeecccCCHHH-----------HHHHHh
Confidence 35556777777776778999999886543221 122357788898888999999999999976 999999
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
.|||-|||||+.++.
T Consensus 226 ~~ADGvIVGSAivk~ 240 (267)
T d1qopa_ 226 AGAAGAISGSAIVKI 240 (267)
T ss_dssp TTCSEEEECHHHHHH
T ss_pred cCCCEEEECHHHHHH
Confidence 999999999998873
|
| >d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Protein ThiJ (YajL) species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.00025 Score=65.30 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=50.9
Q ss_pred HHHHHHHCCCeEEEeCCc---------------------c--CCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhC
Q 045794 63 VRNAIRHLGFGIKDVQTP---------------------E--DILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEK 119 (578)
Q Consensus 63 i~~~L~~~Gv~v~~v~~~---------------------~--dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~ 119 (578)
..+.|+++|+++.++... + +..+||+||+|||......+. ....+.++++++.++
T Consensus 20 p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~l~--~~~~l~~~lr~~~~~ 97 (195)
T d2ab0a1 20 TIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFR--DSTLLVETVKQFHRS 97 (195)
T ss_dssp HHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHH--HCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCcccccc--ccHHHHHHHHHHhhc
Confidence 456788999988776310 0 136799999999742111111 223577899999999
Q ss_pred CCCEEEEech-HHHHhh
Q 045794 120 DRPFLGICLG-LQLLFQ 135 (578)
Q Consensus 120 g~PIlGIClG-~QlLa~ 135 (578)
++||.+||-| ..+|+.
T Consensus 98 gk~i~aiC~g~a~lLa~ 114 (195)
T d2ab0a1 98 GRIVAAICAAPATVLVP 114 (195)
T ss_dssp TCEEEEETHHHHHHTTT
T ss_pred cceeeeeeccchhhhhh
Confidence 9999999999 688887
|
| >d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.00018 Score=67.48 Aligned_cols=74 Identities=18% Similarity=0.166 Sum_probs=53.0
Q ss_pred HHHHHHHCCCeEEEeCCc------------------------------------c--CCCCCCEEEECCCCCchHHHHHH
Q 045794 63 VRNAIRHLGFGIKDVQTP------------------------------------E--DILNANRLIFPGVGAFAAAMDVL 104 (578)
Q Consensus 63 i~~~L~~~Gv~v~~v~~~------------------------------------~--dl~~~DGlILpGGg~~~~~~~~l 104 (578)
....|+++|+++.++.+. + +..+||+||||||......+...
T Consensus 25 ~~~~L~raG~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~~v~~~~yDaliiPGG~g~~~~l~~~ 104 (217)
T d1vhqa_ 25 TLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNF 104 (217)
T ss_dssp HHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHHHTSBCH
T ss_pred HHHHHHHCCCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccccCChHHCCHhHCCEEEecCCcccHHHHhhh
Confidence 467899999999876421 1 13579999999985322211100
Q ss_pred -------H-hhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 105 -------N-KTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 105 -------~-~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
+ ...+.++++++.++++||-+||.|-++|+..
T Consensus 105 ~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~ 144 (217)
T d1vhqa_ 105 ASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKI 144 (217)
T ss_dssp HHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHH
T ss_pred hccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 0 1246788999999999999999999999984
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=97.13 E-value=0.00093 Score=64.24 Aligned_cols=166 Identities=14% Similarity=0.197 Sum_probs=103.6
Q ss_pred hhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHH
Q 045794 341 PMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS 420 (578)
Q Consensus 341 ~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~ 420 (578)
..+++++++++...+|+.+=+-.+.+- .|.--+=++++.++|++.+++=-.-.+.. +.+.+.+
T Consensus 78 ~~~~~~~~~r~~~~~pivlm~Y~N~i~-----~~G~~~F~~~~~~aGvdGliipDLP~ee~------------~~~~~~~ 140 (271)
T d1ujpa_ 78 GALELVREVRALTEKPLFLMTYLNPVL-----AWGPERFFGLFKQAGATGVILPDLPPDED------------PGLVRLA 140 (271)
T ss_dssp HHHHHHHHHHHHCCSCEEEECCHHHHH-----HHCHHHHHHHHHHHTCCEEECTTCCGGGC------------HHHHHHH
T ss_pred hHHHHHHHHhcccCCcEEEEeechhhh-----hCCchhHhHHHhhcCceeEeccchhhhhH------------HHHHHHh
Confidence 457788888888889998767655431 12222337888899999988854444422 2344556
Q ss_pred HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEecc
Q 045794 421 RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCI 500 (578)
Q Consensus 421 ~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi 500 (578)
+++|-.-|.+ +- ..+..+.++.+.+..-+.|-+..+
T Consensus 141 ~~~gl~~I~l-vs-------------------------------------------PtT~~eRi~~i~~~s~GFIY~Vs~ 176 (271)
T d1ujpa_ 141 QEIGLETVFL-LA-------------------------------------------PTSTDARIATVVRHATGFVYAVSV 176 (271)
T ss_dssp HHHTCEEECE-EC-------------------------------------------TTCCHHHHHHHHTTCCSCEEEECC
T ss_pred hccccceeec-cC-------------------------------------------CCcchHHHHHHHHhCcchhhhhcc
Confidence 7776432222 11 223466777777775444443333
Q ss_pred -CCCCCCCCC---CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc----CCCC----HHHHHHH
Q 045794 501 -DCDGQGKGF---DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR----KEVP----IQSVKEH 568 (578)
Q Consensus 501 -~~dG~~~G~---d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~----~~~~----~~~~~~~ 568 (578)
...|..... -.+.++++++.+++||.++=||++++|++.+ .+||||+|||++-. +. + +++++++
T Consensus 177 ~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~---~~ADGvIVGSAiV~~i~e~~-~~~~~~~~i~~~ 252 (271)
T d1ujpa_ 177 TGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA---AVADGVVVGSALVRALEEGR-SLAPLLQEIRQG 252 (271)
T ss_dssp ------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH---TTSSEEEECHHHHHHHHTTC-CHHHHHHHHHHH
T ss_pred cCccCccccchHHHHHHHHhhhccccCCeEEeCCCCCHHHHHHh---CCCCEEEEcHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 223433222 2478899999999999999999999999864 38999999999853 32 2 4556666
Q ss_pred HHh
Q 045794 569 LYK 571 (578)
Q Consensus 569 l~~ 571 (578)
+++
T Consensus 253 l~~ 255 (271)
T d1ujpa_ 253 LQR 255 (271)
T ss_dssp HBC
T ss_pred HHH
Confidence 644
|
| >d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: GK2698 ortholog species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.11 E-value=0.00031 Score=65.93 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=53.5
Q ss_pred HHHHHHHHCCCeEEEeCCc-------------------------------c--CCCCCCEEEECCCCCchHHHHHHHhhc
Q 045794 62 SVRNAIRHLGFGIKDVQTP-------------------------------E--DILNANRLIFPGVGAFAAAMDVLNKTG 108 (578)
Q Consensus 62 ~i~~~L~~~Gv~v~~v~~~-------------------------------~--dl~~~DGlILpGGg~~~~~~~~l~~~~ 108 (578)
.-.+.|+++|++|.+.+.. . ++.+||+|+||||.....++ .....
T Consensus 30 ~P~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~dYd~v~iPGG~g~~~~l--~~~~~ 107 (221)
T d1u9ca_ 30 VPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDF--PDNET 107 (221)
T ss_dssp HHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHS--TTCHH
T ss_pred HHHHHHHHCCCEEEEEecCCCcceeccCccccccchhHHHHHHhhCCCChhHCCHhHCCEEEeCCCCchhhcc--hhhHH
Confidence 3457899999999987531 0 13679999999985322221 12225
Q ss_pred HHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 109 MAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 109 l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
+.+.++++.+.++||-+||.|-++|+.+
T Consensus 108 l~~li~~~~~~~k~iaAIChgp~~l~~a 135 (221)
T d1u9ca_ 108 LQYVLQQFAEDGRIIAAVCHGPSGLVNA 135 (221)
T ss_dssp HHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHHHhccCcceeecccceeeecc
Confidence 6788899999999999999999999874
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00014 Score=72.62 Aligned_cols=89 Identities=17% Similarity=0.224 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCC-------------CCCCCCC-----HHHHHHHHhhC--CCcEEEecCCCCHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCD-------------GQGKGFD-----MDLIKLISDAV--SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~d-------------G~~~G~d-----~~li~~l~~~~--~ipVIasGGi~s~eDi~ 538 (578)
.+.+.++.+.+.|++.++.++.... |-+.|+- +..++++++.+ ++|||++|||.+.+|+.
T Consensus 226 ~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~~~~~~ipIIG~GGI~s~~Da~ 305 (336)
T d1f76a_ 226 ELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAR 305 (336)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHH
T ss_pred hhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHcCCCCeEEEECCCCCHHHHH
Confidence 5678888999999999997653211 3333432 45667777766 69999999999999999
Q ss_pred HHHHhcCchHHhhhhhh-ccCCCCHHHHHHH
Q 045794 539 DVFRKTNASAALAAGIF-HRKEVPIQSVKEH 568 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~-~~~~~~~~~~~~~ 568 (578)
+.+. .||+.|.++|++ +.|+..++++.+.
T Consensus 306 e~i~-aGAsaVQv~Tal~~~Gp~ii~~I~~e 335 (336)
T d1f76a_ 306 EKIA-AGASLVQIYSGFIFKGPPLIKEIVTH 335 (336)
T ss_dssp HHHH-HTCSEEEESHHHHHHCHHHHHHHHHH
T ss_pred HHHH-cCCcHHHHHHHHHhcChHHHHHHHhh
Confidence 9995 999999999996 6787666666553
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=96.98 E-value=0.0028 Score=58.72 Aligned_cols=159 Identities=15% Similarity=0.089 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEe-CCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVG-GGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~g-GGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++++.+.+.|++-|=|.- .. ...++.|+.++++.. -+.+| |.|.+.++ ++++.+
T Consensus 29 ~~a~~~~~al~~~Gi~~iEitl-~~--------p~a~~~i~~l~~~~p-~~~vGaGTV~~~~~-----------~~~a~~ 87 (216)
T d1mxsa_ 29 EDILPLADALAAGGIRTLEVTL-RS--------QHGLKAIQVLREQRP-ELCVGAGTVLDRSM-----------FAAVEA 87 (216)
T ss_dssp GGHHHHHHHHHHTTCCEEEEES-SS--------THHHHHHHHHHHHCT-TSEEEEECCCSHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEeC-CC--------hhHHHHHHHHHHhCC-CcceeeeeeecHHH-----------HHHHHh
Confidence 5788999999999998655432 21 234789999998764 36777 88888765 999999
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceE
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWY 465 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (578)
+||+.++--. + ++++++.. .+.+-
T Consensus 88 aGa~FivsP~--~-------------~~~v~~~a-~~~~i---------------------------------------- 111 (216)
T d1mxsa_ 88 AGAQFVVTPG--I-------------TEDILEAG-VDSEI---------------------------------------- 111 (216)
T ss_dssp HTCSSEECSS--C-------------CHHHHHHH-HHCSS----------------------------------------
T ss_pred CCCCEEECCC--C-------------cHHHHHHH-HhcCC----------------------------------------
Confidence 9998776522 1 23556544 44431
Q ss_pred EEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 045794 466 QCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKT 544 (578)
Q Consensus 466 ~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~ 544 (578)
..+.|. .++- .+..+.++|++.+=+...+..| | ...++.++.-. ++|+++.|||. .+++.+.++ .
T Consensus 112 -~~iPGv-----~Tps-Ei~~A~~~G~~~vKlFPA~~~~---g--~~~ikal~~p~p~~~fiptGGV~-~~n~~~yl~-~ 177 (216)
T d1mxsa_ 112 -PLLPGI-----STPS-EIMMGYALGYRRFKLFPAEISG---G--VAAIKAFGGPFGDIRFCPTGGVN-PANVRNYMA-L 177 (216)
T ss_dssp -CEECEE-----CSHH-HHHHHHTTTCCEEEETTHHHHT---H--HHHHHHHHTTTTTCEEEEBSSCC-TTTHHHHHH-S
T ss_pred -CccCCc-----CCHH-HHHHHHHCCCCEEEeccccccc---c--HHHHHHHhcccccCceeccCCCC-HHHHHHHHh-c
Confidence 112221 2333 4556778999999998865432 2 35777777655 69999999995 689999886 5
Q ss_pred CchHHhhhhhhc
Q 045794 545 NASAALAAGIFH 556 (578)
Q Consensus 545 G~~gv~vgsa~~ 556 (578)
|.-.+..|+.+.
T Consensus 178 ~~v~avggs~l~ 189 (216)
T d1mxsa_ 178 PNVMCVGTTWML 189 (216)
T ss_dssp TTBCCEEECTTS
T ss_pred CCeEEEEccccC
Confidence 555555566554
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=96.95 E-value=0.00081 Score=64.48 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.|.+..+...+..-..||++-..+..+.... .....+.++++.+.+++||.+|-||++.+| ++++.+.
T Consensus 153 t~~~Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pi~vGFGI~~~e~-----------v~~~~~~ 221 (261)
T d1rd5a_ 153 IPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEH-----------VKQIAQW 221 (261)
T ss_dssp SCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHH-----------HHHHHHT
T ss_pred CchhHHHHHHhcCcchhhhhhccCcccccccchhHHHHHHHHhhhccCCCeEEEcCCCCHHH-----------HHHHHhc
Confidence 4557777777776778999988776543321 234456888888888999999999999977 9999999
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
|||.|||||+.++
T Consensus 222 gaDGvIVGSaiv~ 234 (261)
T d1rd5a_ 222 GADGVIIGSAMVR 234 (261)
T ss_dssp TCSEEEECHHHHH
T ss_pred CCCEEEECHHHHH
Confidence 9999999999886
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.93 E-value=0.00078 Score=66.31 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHcCCCeEEEEeccc----CC-----C---------------CCCCCchhHHHHHHHhhhc-cccEEEeC
Q 045794 307 GKPVELARQYYKEGADEISFLNITG----FR-----D---------------FPLGDLPMLQVLRLTSENV-FVPLTVGG 361 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~----~~-----~---------------~~~~~~~~~~~i~~i~~~~-~~pi~~gG 361 (578)
.++.++++...+.|++.+.+++--. .. . +..-+...++.++++++.+ ++||...|
T Consensus 183 ~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~G 262 (312)
T d1gtea2 183 TDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATG 262 (312)
T ss_dssp SCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEES
T ss_pred hhHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEEEEc
Confidence 5778999999999999998875311 00 0 0001123478889988877 59999999
Q ss_pred CccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 362 GIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 362 Gir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
||++.+| +.+++.+||+-|-|+|+++.+.+.++
T Consensus 263 GI~~~~d-----------~~~~l~aGA~~Vqv~ta~~~~G~~~i 295 (312)
T d1gtea2 263 GIDSAES-----------GLQFLHSGASVLQVCSAVQNQDFTVI 295 (312)
T ss_dssp SCCSHHH-----------HHHHHHTTCSEEEESHHHHTSCTTHH
T ss_pred CCCCHHH-----------HHHHHHcCCCeeEECHhhhccChHHH
Confidence 9999977 89999999999999999998654443
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=96.91 E-value=0.00051 Score=67.38 Aligned_cols=83 Identities=20% Similarity=0.302 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCC------------------CCCCCchhHHHHHHHhhhccccEEEeCCcccccc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRD------------------FPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTD 368 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~------------------~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d 368 (578)
.+..++++.+.+.|++.+.+.+-..... +..-....++.++++++.+++||...|||++.+|
T Consensus 176 ~~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~~ipIig~GGI~s~~D 255 (311)
T d1ep3a_ 176 TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQD 255 (311)
T ss_dssp SCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHH
T ss_pred cchHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhcceeEEEeCCcCCHHH
Confidence 4778999999999999998865321100 0000123588899999999999999999999977
Q ss_pred CCCCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 369 ANGRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
+.+++.+||+-|-+||.++.+
T Consensus 256 -----------a~~~i~~GAd~V~ig~~~~~~ 276 (311)
T d1ep3a_ 256 -----------VLEMYMAGASAVAVGTANFAD 276 (311)
T ss_dssp -----------HHHHHHHTCSEEEECTHHHHC
T ss_pred -----------HHHHHHcCCCEEEecHHHHcC
Confidence 888889999999999999885
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.89 E-value=0.00094 Score=63.47 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.|.+..+...+..-..||++-..+..+.... .....+.++++++.+++|+.+|-||++.|| ++++++.
T Consensus 144 t~~~ri~~i~~~s~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t~~Pv~vGFGI~~~e~-----------v~~~~~~ 212 (248)
T d1geqa_ 144 TPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREH-----------VVSLLKE 212 (248)
T ss_dssp CCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHH-----------HHHHHHT
T ss_pred chhHHHHHHHhcCCCeEEEEecccccccchhhhhhHHHHHHHHhhhcccceeeecccCCHHH-----------HHHHHhc
Confidence 4557777777777788999998876443221 234467889999888999999999999976 9999999
Q ss_pred Ccceeecchhhhc
Q 045794 387 GADKISIGSDAVY 399 (578)
Q Consensus 387 Ga~~vv~gt~~~~ 399 (578)
|||.||+||+.++
T Consensus 213 ~ADGvIVGSaiv~ 225 (248)
T d1geqa_ 213 GANGVVVGSALVK 225 (248)
T ss_dssp TCSEEEECHHHHH
T ss_pred CCCEEEECHHHHH
Confidence 9999999999886
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.00047 Score=69.63 Aligned_cols=95 Identities=16% Similarity=0.254 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCC-------------CCCCCCC-----CHHHHHHHHhhC--CCcEEEecCCCCHHHHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDC-------------DGQGKGF-----DMDLIKLISDAV--SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~-------------dG~~~G~-----d~~li~~l~~~~--~ipVIasGGi~s~eDi~ 538 (578)
++.++++.+.+.|++.++..+... .|.+.|. -+..++.+.+.+ ++|||+.|||.+.+|+.
T Consensus 235 ~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~ 314 (367)
T d1d3ga_ 235 DKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDAL 314 (367)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHH
T ss_pred hhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCCCccEEEECCCCCHHHHH
Confidence 366789999999999999765321 1222333 235666776655 69999999999999999
Q ss_pred HHHHhcCchHHhhhhhh-ccCCCCH----HHHHHHHHhCCC
Q 045794 539 DVFRKTNASAALAAGIF-HRKEVPI----QSVKEHLYKEGI 574 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~-~~~~~~~----~~~~~~l~~~~i 574 (578)
+.+. .||+.|.++|++ +.|+-.+ ++++++|.++|+
T Consensus 315 e~i~-aGAs~VQi~Ta~~~~Gp~ii~~I~~~L~~~l~~~G~ 354 (367)
T d1d3ga_ 315 EKIR-AGASLVQLYTALTFWGPPVVGKVKRELEALLKEQGF 354 (367)
T ss_dssp HHHH-HTCSEEEESHHHHHHCTHHHHHHHHHHHHHHHHTTC
T ss_pred HHHH-cCCCHHHhhHHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 9996 999999999996 5676544 566667777776
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=96.85 E-value=0.00039 Score=68.41 Aligned_cols=94 Identities=11% Similarity=0.107 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCCcEEEEeccC---------CC----------CCCCCC-----CHHHHHHHHhhC--CCcEEEecCCCC
Q 045794 480 AYELAKAVEDLGAGEILLNCID---------CD----------GQGKGF-----DMDLIKLISDAV--SIPVIASSGAGA 533 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~---------~d----------G~~~G~-----d~~li~~l~~~~--~ipVIasGGi~s 533 (578)
+...++.+.+.+++.+..++.. ++ |-+.|. .+..+.++.+.+ ++|||++|||.+
T Consensus 174 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~~~~~~Iig~GGI~s 253 (311)
T d1juba_ 174 FDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIET 253 (311)
T ss_dssp HHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCS
T ss_pred HHHHHHHHHhhccceEeccccccccccccccccccccccccccCCccccccCchHHHHHHHHHHhcCCCeeEEecCCcCC
Confidence 4556778888888887754321 11 223332 245667777766 499999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhc-cCCCCH----HHHHHHHHhCCC
Q 045794 534 VEHFSDVFRKTNASAALAAGIFH-RKEVPI----QSVKEHLYKEGI 574 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~-~~~~~~----~~~~~~l~~~~i 574 (578)
.+|+.+.+. +||+.|.++|+++ .|+..+ ++++++|.++|+
T Consensus 254 ~~Da~~~i~-aGA~~Vql~tal~~~Gp~~i~~i~~~L~~~m~~~G~ 298 (311)
T d1juba_ 254 GQDAFEHLL-CGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGY 298 (311)
T ss_dssp HHHHHHHHH-HTCSEEEECHHHHHHCTHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHH-cCCCceeeeHhhHhcChHHHHHHHHHHHHHHHHcCC
Confidence 999999995 9999999999984 565544 455666666665
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.0014 Score=59.79 Aligned_cols=86 Identities=21% Similarity=0.318 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCcEEEEeccC---CCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 481 YELAKAVEDLGAGEILLNCID---CDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~---~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
.+.++.+.+.+++.++++-.. ..|....+ .++.+++... ...|+.+.||+ +.+++.++.+ .|+|.++|||+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~~~-~~~~i~~~gGi-~~~~~~~~~~-~Gad~iVVGr~I~ 193 (213)
T d1q6oa_ 117 WEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSD-MGFKVTVTGGL-ALEDLPLFKG-IPIHVFIAGRSIR 193 (213)
T ss_dssp HHHHHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHH-TTCEEEEESSC-CGGGGGGGTT-SCCSEEEESHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHhcccCcCCeeCCHHHHHHHHHhhc-cCceEecCCCc-CcCCHHHHHH-cCCCEEEEChhhc
Confidence 456777888999888764211 12222222 2344444443 46889999998 5799999985 8999999999999
Q ss_pred cCCCCHHHHHHHH
Q 045794 557 RKEVPIQSVKEHL 569 (578)
Q Consensus 557 ~~~~~~~~~~~~l 569 (578)
..+-+.+.++++.
T Consensus 194 ~a~dp~~a~~~~~ 206 (213)
T d1q6oa_ 194 DAASPVEAARQFK 206 (213)
T ss_dssp TSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 8776655555543
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=96.73 E-value=0.0019 Score=63.45 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=50.6
Q ss_pred HHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh-ccCCCCH----HHHHHHHHhCCC
Q 045794 511 MDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF-HRKEVPI----QSVKEHLYKEGI 574 (578)
Q Consensus 511 ~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~-~~~~~~~----~~~~~~l~~~~i 574 (578)
+..+.++.+.+ ..|||++|||.+.+|+.+.+. .||+.|.++|++ ++|+..+ ++++++|+++|+
T Consensus 230 l~~v~~~~~~~~~~~Iig~GGI~s~~Da~e~i~-aGAs~Vqv~Tal~~~Gp~~i~~i~~~L~~~l~~~G~ 298 (312)
T d2b4ga1 230 LANVNAFFRRCPDKLVFGCGGVYSGEEAFLHIL-AGASMVQVGTALHDEGPIIFARLNKELQEIMTNKGY 298 (312)
T ss_dssp HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH-HTEEEEEESHHHHHHCTTHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHcCCCceeecCCcCCHHHHHHHHH-cCCChheeehhhHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 56777777666 578999999999999999985 999999999987 4566544 566667777776
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=96.72 E-value=0.00036 Score=65.84 Aligned_cols=57 Identities=9% Similarity=0.091 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHH
Q 045794 508 GFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHL 569 (578)
Q Consensus 508 G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l 569 (578)
..+.+.+..+++.. ++|+++++||+++|+++++. .+||||+||||+.+. +++..+..
T Consensus 166 ~~~~~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~--~~ADgVVVGSAiv~~---ie~~~~~~ 223 (229)
T d1viza_ 166 LGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA--EHADVIVVGNAVYED---FDRALKTV 223 (229)
T ss_dssp CCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHH--TTCSEEEECTHHHHC---HHHHHTHH
T ss_pred cccchhHHHHHhhccCcceEEEcccCCHHHHHHHH--cCCCEEEECHHHHhh---HHHHHHHH
Confidence 44677788876655 59999999999999999986 489999999999864 45444433
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.50 E-value=0.0028 Score=59.12 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHH-cCCCeEEEEecc-cCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 307 GKPVELARQYYK-EGADEISFLNIT-GFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 307 ~~p~~~a~~~~~-~g~~~i~~~Dl~-~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
..|++..+.|.. ..++.+.+.-.. |..+.. -....++-|+++++.. .+.|+|+|||+. +.++.+
T Consensus 121 ~t~~~~~~~~l~~~~~d~vlim~V~pG~~GQ~-f~~~~l~KI~~lr~~~~~~~I~VDGGIn~------------~~i~~l 187 (221)
T d1tqxa_ 121 KTDVQKLVPILDTNLINTVLVMTVEPGFGGQS-FMHDMMGKVSFLRKKYKNLNIQVDGGLNI------------ETTEIS 187 (221)
T ss_dssp TSCGGGGHHHHTTTCCSEEEEESSCTTCSSCC-CCGGGHHHHHHHHHHCTTCEEEEESSCCH------------HHHHHH
T ss_pred ccccccchhhcccccccEEEEEeecccccccc-cCcchhHHHHHHHHhcCCcceEEEcccCH------------HhHHHH
Confidence 456666666664 458888776665 443332 2356677788887654 588999999998 469999
Q ss_pred HHcCcceeecchhhhcc
Q 045794 384 FRSGADKISIGSDAVYA 400 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~ 400 (578)
.++|||.+|.||+.+..
T Consensus 188 ~~aGad~iV~GS~if~~ 204 (221)
T d1tqxa_ 188 ASHGANIIVAGTSIFNA 204 (221)
T ss_dssp HHHTCCEEEESHHHHTC
T ss_pred HHcCCCEEEEChHHHCC
Confidence 99999999999999874
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.43 E-value=0.0017 Score=65.42 Aligned_cols=123 Identities=14% Similarity=0.178 Sum_probs=80.4
Q ss_pred HHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCC
Q 045794 377 LEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLG 456 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~ 456 (578)
++.++.+.++|+|.++|.++--. ...+ .+.++++.+.|+ ..|++ =.+..
T Consensus 118 ~~r~~~l~~aGvd~ivID~A~Gh-~~~~--------i~~lK~ir~~~~-~~vIa-GNVaT-------------------- 166 (368)
T d2cu0a1 118 IKRAIELDKAGVDVIVVDTAHAH-NLKA--------IKSMKEMRQKVD-ADFIV-GNIAN-------------------- 166 (368)
T ss_dssp HHHHHHHHHTTCSEEEEECSCCC-CHHH--------HHHHHHHHHTCC-SEEEE-EEECC--------------------
T ss_pred HHHHHHHHHcCCCEEEecCcccc-hhhh--------hhhhhhhhhhcc-cceee-ccccC--------------------
Confidence 57789999999999999776544 2333 367889888885 33443 22111
Q ss_pred CCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEe------ccCCCCCCCCC-CHHHHHHHH---hhCCCcEE
Q 045794 457 PNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLN------CIDCDGQGKGF-DMDLIKLIS---DAVSIPVI 526 (578)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~t------di~~dG~~~G~-d~~li~~l~---~~~~ipVI 526 (578)
.+.+.. ..|++.|-+- ..++.-+.-|+ -+..+.++. ...++|||
T Consensus 167 ------------------------~e~~~~--l~gaD~VkVGIG~Gs~CTTr~~tGvG~Pq~sAi~e~~~~~~~~~~~ii 220 (368)
T d2cu0a1 167 ------------------------PKAVDD--LTFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVI 220 (368)
T ss_dssp ------------------------HHHHTT--CTTSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEE
T ss_pred ------------------------HHHHHh--hhcCcceeecccCcccccchhhcccccchHHHHHHHHHHHhccCCeeE
Confidence 122222 2467766531 12233333343 345555554 34479999
Q ss_pred EecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 527 asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+-||+++.-|+.+++. +|||.||+|+.|..
T Consensus 221 ADGGi~~~Gdi~KAla-~GAd~VMlG~~lAg 250 (368)
T d2cu0a1 221 ADGGIRYSGDIVKAIA-AGADAVMLGNLLAG 250 (368)
T ss_dssp EESCCCSHHHHHHHHH-TTCSEEEESTTTTT
T ss_pred ecCCCCcCChhheeee-eccceeeccchhcc
Confidence 9999999999999996 99999999999754
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.02 Score=54.95 Aligned_cols=198 Identities=12% Similarity=0.093 Sum_probs=122.2
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
..+.+..++.+++- |+-+....-...+-..-..+++.+++...+||.+ ..+ |+.+++.+++.+++|.+
T Consensus 31 ~avi~AAe~~~sPv--Ilq~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~l-----HlD-----H~~~~e~i~~ai~~Gft 98 (284)
T d1gvfa_ 31 QAILEVCSEMRSPV--ILAGTPGTFKHIALEEIYALCSAYSTTYNMPLAL-----HLD-----HHESLDDIRRKVHAGVR 98 (284)
T ss_dssp HHHHHHHHHHTCCC--EEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEE-----EEE-----EECCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCE--EEEcCHhHHhhCCHHHHHHHHHHHHHhcCCeEEe-----eec-----cccchHHHHHHHhcCCC
Confidence 34555555666763 3444421001112123445677788888899864 222 56778999999999999
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
-|.++...+.-.+ |.+..+++. ..+| +++-.--|.+.- .. +|
T Consensus 99 SVMiD~S~lp~ee---------Ni~~t~~vv~~ah~~g-----v~VE~ElG~v~g----------~e----d~------- 143 (284)
T d1gvfa_ 99 SAMIDGSHFPFAE---------NVKLVKSVVDFCHSQD-----CSVEAELGRLGG----------VE----DD------- 143 (284)
T ss_dssp EEEECCTTSCHHH---------HHHHHHHHHHHHHHTT-----CEEEEEESCCC--------------------------
T ss_pred eEEEECCCCCHHH---------HHHHHHHHHHHHHhhc-----cceeeeeeeecc----------cc----cc-------
Confidence 9999666554211 334444444 4465 233322222100 00 00
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCcEEEecCCCCHHH-HHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG---FDMDLIKLISDAVSIPVIASSGAGAVEH-FSDVFR 542 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G---~d~~li~~l~~~~~ipVIasGGi~s~eD-i~~l~~ 542 (578)
.. ..-....-.++.+..+-+++-|++.+-+.-=+.-|.++| .|+++++++.+.+++|++.-||-+.++| ++++.
T Consensus 144 ~~-~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~l~~~~L~~i~~~~~vPLVlHGgSG~~~e~i~~ai- 221 (284)
T d1gvfa_ 144 MS-VDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTI- 221 (284)
T ss_dssp -------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCCSCEEECCCTTCCHHHHHHHH-
T ss_pred cc-ccccccccCCHHHHHHHHHHhCCCEEeeecCceeeccCCCCccccchhhhhhccccCCeEeeCCCCCCHHHHHHHH-
Confidence 00 000011234789999999999999988766666677665 4899999999999999999999887766 55555
Q ss_pred hcCchHHhhhhhhc
Q 045794 543 KTNASAALAAGIFH 556 (578)
Q Consensus 543 ~~G~~gv~vgsa~~ 556 (578)
+.|+..+=|++.+.
T Consensus 222 ~~Gi~KiNi~T~l~ 235 (284)
T d1gvfa_ 222 ELGVTKVNVATELK 235 (284)
T ss_dssp HTTEEEEEECHHHH
T ss_pred HcCeEEEEechHHH
Confidence 58988877777653
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=96.31 E-value=0.0058 Score=56.75 Aligned_cols=80 Identities=24% Similarity=0.161 Sum_probs=61.7
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..|| -+|+++.+.|+.-++-. -+--+...+ -.|...|+.|.++.++||.|++||.+..| +....+
T Consensus 133 ~~D~-v~ak~Le~~Gc~avMPl--gsPIGSg~G-l~n~~~l~~i~~~~~vPvIvDAGIG~pSd-----------Aa~AME 197 (251)
T d1xm3a_ 133 SDDV-VLARKLEELGVHAIMPG--ASPIGSGQG-ILNPLNLSFIIEQAKVPVIVDAGIGSPKD-----------AAYAME 197 (251)
T ss_dssp CSCH-HHHHHHHHHTCSCBEEC--SSSTTCCCC-CSCHHHHHHHHHHCSSCBEEESCCCSHHH-----------HHHHHH
T ss_pred CCCH-HHHHHHHHcCChhHHHh--hhhhhcCCC-cCChHHHHHHHhcCCccEEEecCCCCHHH-----------HHHHHH
Confidence 3566 68999999999877643 221122122 45677778888889999999999999987 899999
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
+|+|-|.++|+.-..
T Consensus 198 lG~daVLvNTAIA~a 212 (251)
T d1xm3a_ 198 LGADGVLLNTAVSGA 212 (251)
T ss_dssp TTCSEEEESHHHHTS
T ss_pred ccCCEEEechhhhcC
Confidence 999999999987653
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=96.28 E-value=0.0071 Score=60.82 Aligned_cols=122 Identities=13% Similarity=0.123 Sum_probs=83.3
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCC-CCCHHHHHHHHHHcC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGR-PIGAYELAKAVEDLG 491 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~e~~~~~~~~G 491 (578)
.|.++.+.+..|++.|.+.+..... ..|..... .......++.++..|
T Consensus 217 ~EIi~aIR~~vg~~~v~~r~~~~~~-------------------------------~~g~~~~~~~~~~~~~~~~ld~~~ 265 (374)
T d1gwja_ 217 LEVVDAVAEVFGPERVGIRLTPFLE-------------------------------LFGLTDDEPEAMAFYLAGELDRRG 265 (374)
T ss_dssp HHHHHHHHHHHCGGGEEEEECTTCC-------------------------------CTTCCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCcceeeeeeeecc-------------------------------ccCCcccchHHHHHHhhccccccC
Confidence 5889999999998877665542211 01111110 111345677889999
Q ss_pred CcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 492 AGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 492 ~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
++.+-++.-...+..........+.+++.+++|||+.|++ +++...+++++..||.|.+|+++...+.-...++
T Consensus 266 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i-~~~~ae~~l~~g~aDlV~~gR~~iadPd~~~K~~ 339 (374)
T d1gwja_ 266 LAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIANPDLPERFR 339 (374)
T ss_dssp CSEEEEECSCBTTBCCCCCTTHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred ceEEEeccCcccCCCcchhHHHHHHHHHHcCCCEEEECCc-CHHHHHHHHHcCCCcEehhhHHHHHCccHHHHHH
Confidence 9988776544433333333446678899999999999999 7899999997666999999999987775444443
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.27 E-value=0.00074 Score=63.65 Aligned_cols=62 Identities=11% Similarity=0.153 Sum_probs=46.5
Q ss_pred CcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 492 AGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 492 ~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
++...+|.... ..+.+.+.+.++++.. ++||++++||++.|+++++.+ ++|||+|||++.+.
T Consensus 159 vs~~gvtg~~~---~~~~~~~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~--~ADgvIVGSaive~ 221 (231)
T d2f6ua1 159 FNLPIIYIEYS---GTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR--YADTIIVGNVIYEK 221 (231)
T ss_dssp TCCSEEEEECT---TSCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH--HSSEEEECHHHHHH
T ss_pred cceEEEEEecc---cccchhhHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHh--cCCEEEEChHHhcc
Confidence 45555555332 2345677777776655 699999999999999999874 79999999999653
|
| >d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein Ydr533Cp species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.20 E-value=0.003 Score=59.54 Aligned_cols=50 Identities=4% Similarity=0.006 Sum_probs=38.5
Q ss_pred CCCCEEEECCCCCchHHHHHH-HhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 84 LNANRLIFPGVGAFAAAMDVL-NKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 84 ~~~DGlILpGGg~~~~~~~~l-~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.+||+|+||||... +..+ ....+.++++++.++++||-+||-|-+.|+.+
T Consensus 96 ~~ydav~ipGG~g~---~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~ 146 (236)
T d1qvwa_ 96 DDYQIFMASAGHGT---LFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGL 146 (236)
T ss_dssp GGCSEEEECCSTTH---HHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hHCCEEEEeCCccc---hhcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHH
Confidence 57999999998532 2222 22356788999999999999999999988763
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=96.07 E-value=0.0097 Score=58.92 Aligned_cols=95 Identities=17% Similarity=0.096 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCC-CCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRD-FPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~-~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+.+++++.+.+.|++.+++.--..... .....+.+....+++.+.+++||.+-|+|++.++ ++++++
T Consensus 228 ~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~-----------ae~~l~ 296 (337)
T d1z41a1 228 ADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSM-----------AEEILQ 296 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHH-----------HHHHHH
T ss_pred hhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhcCceEEEeCCcCCHHH-----------HHHHHH
Confidence 5788899999999999888764432211 1122356778888999999999999999999865 999999
Q ss_pred cC-cceeecchhhhccchhhhhccccCCchHHHHHHHhCC
Q 045794 386 SG-ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG 424 (578)
Q Consensus 386 ~G-a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (578)
.| ||-|.+|-.++.| |++.+++.+.-+
T Consensus 297 ~g~~D~V~~gR~~iad------------Pd~~~k~~~~~~ 324 (337)
T d1z41a1 297 NGRADLIFIGRELLRD------------PFFARTAAKQLN 324 (337)
T ss_dssp TTSCSEEEECHHHHHC------------TTHHHHHHHHTT
T ss_pred CCCcceehhhHHHHhC------------chHHHHHHhhCC
Confidence 98 9999999999985 466677776543
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=96.04 E-value=0.028 Score=56.03 Aligned_cols=123 Identities=12% Similarity=0.189 Sum_probs=83.5
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.|.++.+.+..|++.|.+-+...... .|. ..|+.+ .-+..++++.+++.|+
T Consensus 214 ~Eii~aIr~~~g~d~i~~r~s~~~~~--------------~~~-------------~~gg~~--~~e~~~~~~~l~~~gv 264 (363)
T d1vyra_ 214 LEVVDAVCNEWSADRIGIRVSPIGTF--------------QNV-------------DNGPNE--EADALYLIEELAKRGI 264 (363)
T ss_dssp HHHHHHHHHHSCGGGEEEEECCSSCB--------------TTB-------------CCCTTH--HHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhhhcCCCCcceeecccccc--------------cch-------------hhcccc--hHHHHHHHHHHHhcCC
Confidence 58889999999988765555432210 000 011111 1145678999999999
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
+.+-+..-+.. ...++...+.+.+++.+++||++.|++ +++.+.+++++..||.|.+|+++...+.-...++
T Consensus 265 d~i~vs~~~~~-~~~~~~~~~~~~~~~~~~~~vi~~G~~-t~~~ae~~l~~G~~DlV~~gR~liadP~~~~K~~ 336 (363)
T d1vyra_ 265 AYLHMSETDLA-GGKPYSEAFRQKVRERFHGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQ 336 (363)
T ss_dssp SEEEEECCBTT-BCCCCCHHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred eeeecccCCcc-CCccccHHHHHHHHHhcCceEEecCCC-CHHHHHHHHHCCCcceehhhHHHHHCccHHHHHH
Confidence 98776543322 123457778888899999999888765 8999999997445999999999987775444433
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=95.98 E-value=0.0093 Score=58.53 Aligned_cols=74 Identities=20% Similarity=0.213 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCC------------------CCCC-CHHHHHHHHhhC-CCcEEEecCCCCHHHHHHH
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQ------------------GKGF-DMDLIKLISDAV-SIPVIASSGAGAVEHFSDV 540 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~------------------~~G~-d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l 540 (578)
.+.++.+.+.|++.|.+-+- .|+ ..|+ ....+.++.... ++|||+.|||++..|+.++
T Consensus 172 ~~~a~~~~~~GaD~i~v~~~--gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~v~viadGGIr~g~Dv~KA 249 (329)
T d1p0ka_ 172 KASAGKLYEAGAAAVDIGGY--GGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKA 249 (329)
T ss_dssp HHHHHHHHHHTCSEEEEEC-----------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEcCC--CCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcCCceEEEcCCcccHHHHHHH
Confidence 56667788899999987431 111 0111 234444444433 7999999999999999999
Q ss_pred HHhcCchHHhhhhhhcc
Q 045794 541 FRKTNASAALAAGIFHR 557 (578)
Q Consensus 541 ~~~~G~~gv~vgsa~~~ 557 (578)
+. +||++|++|+.+..
T Consensus 250 la-lGAdaV~iGr~~l~ 265 (329)
T d1p0ka_ 250 IA-LGASCTGMAGHFLK 265 (329)
T ss_dssp HH-TTCSEEEECHHHHH
T ss_pred HH-cCCCchhccHHHHH
Confidence 95 99999999997764
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.98 E-value=0.0073 Score=60.10 Aligned_cols=77 Identities=13% Similarity=0.051 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCC-HHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFD-MDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d-~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+-+..+.+.|++.+++.+-..-..-.++. .+.+.++++.+ ++|||++|||++-.|+.+++. +||++|.+|+.+..
T Consensus 228 ~~da~~a~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Dv~KALA-LGA~~V~igrp~L~ 306 (349)
T d1tb3a1 228 KEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALA-LGARCIFLGRPILW 306 (349)
T ss_dssp HHHHHHHHHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHH-TTCSCEEESHHHHH
T ss_pred hHHHHHHHHhhccceeeeccccccccccccchhhcceeeeccCCCeeEEeccCcCcHHHHHHHHH-cCCCEEEEChHHHH
Confidence 456778889999999987643333333443 46777776655 689999999999999999995 99999999997764
Q ss_pred C
Q 045794 558 K 558 (578)
Q Consensus 558 ~ 558 (578)
+
T Consensus 307 ~ 307 (349)
T d1tb3a1 307 G 307 (349)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.90 E-value=0.016 Score=54.15 Aligned_cols=79 Identities=22% Similarity=0.237 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.|| -+|+.+++.|+.-++= +..--+. ...-.|...++.+.+..++|+.+++||.+.+| +...+++
T Consensus 136 ~D~-v~ak~le~~Gc~~vMp--lgsPIGs-g~Gi~n~~~l~~i~~~~~vpvivdAGIg~psd-----------aa~AMEl 200 (243)
T d1wv2a_ 136 DDP-IIARQLAEIGCIAVMP--LAGLIGS-GLGICNPYNLRIILEEAKVPVLVDAGVGTASD-----------AAIAMEL 200 (243)
T ss_dssp SCH-HHHHHHHHSCCSEEEE--CSSSTTC-CCCCSCHHHHHHHHHHCSSCBEEESCCCSHHH-----------HHHHHHH
T ss_pred CCH-HHHhHHHHcCceeeee--ccccccc-ccccccHHHHHhccccCCcceEeecccCCHHH-----------HHHHHHc
Confidence 455 6899999999985553 3221111 11134555666677778999999999999987 9999999
Q ss_pred Ccceeecchhhhcc
Q 045794 387 GADKISIGSDAVYA 400 (578)
Q Consensus 387 Ga~~vv~gt~~~~~ 400 (578)
|+|-|.++|+-.+.
T Consensus 201 G~dgVLvnsaIa~A 214 (243)
T d1wv2a_ 201 GCEAVLMNTAIAHA 214 (243)
T ss_dssp TCSEEEESHHHHTS
T ss_pred cCCEEEechHhhcC
Confidence 99999999988764
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=95.89 E-value=0.013 Score=54.99 Aligned_cols=163 Identities=13% Similarity=0.077 Sum_probs=106.8
Q ss_pred cccEEEeCCccccccCCCCccChHHHHHHHHHcCcce--eecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEE
Q 045794 354 FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK--ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVS 431 (578)
Q Consensus 354 ~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~--vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~s 431 (578)
.+|+...||..+..+ ..---.+.++++++.|... +=+|...+++. .+.++++.+.+|++ +-+.
T Consensus 5 kv~vYas~g~~~~~~---~~~~~~~~~~~~~~~Gf~~~Kikvg~~~~~~d-----------i~~v~~vr~~~g~~-~~l~ 69 (247)
T d1tzza1 5 RVFVYAAGGYYYPGK---GLSMLRGEMRGYLDRGYNVVKMKIGGAPIEED-----------RMRIEAVLEEIGKD-AQLA 69 (247)
T ss_dssp EEEEEEECCCC-------CHHHHHHHHHHHHTTTCSEEEEECSSSCHHHH-----------HHHHHHHHHHHTTT-CEEE
T ss_pred ceEEEEeCCcCCCCc---CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHH-----------HHHHHHHHHhccCC-ceEE
Confidence 477877777643221 0111346788899999764 44454434321 36788888999876 6678
Q ss_pred EeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCH
Q 045794 432 IDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDM 511 (578)
Q Consensus 432 lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~ 511 (578)
+|+... |.. -+.+++++.+++.++..+ +.-...-|+
T Consensus 70 vDan~~----------------------------------~~~---~~Ai~~~~~l~~~~i~wi-------EeP~~~~d~ 105 (247)
T d1tzza1 70 VDANGR----------------------------------FNL---ETGIAYAKMLRDYPLFWY-------EEVGDPLDY 105 (247)
T ss_dssp EECTTC----------------------------------CCH---HHHHHHHHHHTTSCCSEE-------ECCSCTTCH
T ss_pred eccccc----------------------------------ccc---hhHHHHHhhcchhhhhhh-------ccccccccc
Confidence 896542 211 146788888888876422 122333489
Q ss_pred HHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc-----hHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 512 DLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNA-----SAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 512 ~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~-----~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+.++++++.+++||.+.-.+.+..++..+++ .|+ |.+.+.-....|-....++.+.+.+.|+++
T Consensus 106 ~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~-~~a~~~~~Di~~~d~~~~GGit~~~~i~~~a~~~g~~~ 174 (247)
T d1tzza1 106 ALQAALAEFYPGPMATGENLFSHQDARNLLR-YGGMRPDRDWLQFDCALSYGLCEYQRTLEVLKTHGWSP 174 (247)
T ss_dssp HHHHHHTTTCCSCEEECTTCCSHHHHHHHHH-HSCCCTTTCEECCCTTTTTCHHHHHHHHHHHHHTTCCG
T ss_pred hhhhhhhhccccccccchhhhhhHHHHHHHH-ccCCcCcceeEeeccccccchhHHHHHHHHHHHcCCCe
Confidence 9999999999999998889999999999986 554 334433333334444667888888888764
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=95.85 E-value=0.0039 Score=58.45 Aligned_cols=47 Identities=28% Similarity=0.402 Sum_probs=37.4
Q ss_pred HHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccc
Q 045794 343 LQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAA 401 (578)
Q Consensus 343 ~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~ 401 (578)
.+.+..+.+.. .+|+.+|+||++.|+ ++++. .+||.||+||+..++.
T Consensus 169 ~~~~~~v~~~~~~~Pl~VGFGIst~e~-----------a~~v~-~~ADgVVVGSAiv~~i 216 (229)
T d1viza_ 169 IEAVKKTKAVLETSTLFYGGGIKDAET-----------AKQYA-EHADVIVVGNAVYEDF 216 (229)
T ss_dssp HHHHHHHHHTCSSSEEEEESSCCSHHH-----------HHHHH-TTCSEEEECTHHHHCH
T ss_pred chhHHHHHhhccCcceEEEcccCCHHH-----------HHHHH-cCCCEEEECHHHHhhH
Confidence 35555555543 689999999999976 98887 6999999999988753
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.79 E-value=0.012 Score=54.54 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHc--CCCeEEEEecc-cCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHH
Q 045794 307 GKPVELARQYYKE--GADEISFLNIT-GFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 307 ~~p~~~a~~~~~~--g~~~i~~~Dl~-~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
..|++..+.|... -++.+.+.-.+ +..+.. -....++-|+++.+.. .++|+++|||+.- .+..
T Consensus 118 ~t~~~~~~~~l~~~~~~d~vlim~v~PG~~GQ~-f~~~~l~kI~~l~~~~~~~~I~VDGGIn~~------------~i~~ 184 (220)
T d1h1ya_ 118 GTPVEEVFPLVEAENPVELVLVMTVEPGFGGQK-FMPEMMEKVRALRKKYPSLDIEVDGGLGPS------------TIDV 184 (220)
T ss_dssp TSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCC-CCGGGHHHHHHHHHHCTTSEEEEESSCSTT------------THHH
T ss_pred ccchhHHHHHHhcccccceEEEEecCCCCcccc-cchhhhHHHHHHHhcCCCceEEEEecCCHH------------HHHH
Confidence 3455555656553 36777776555 443332 2345677778876643 6899999999994 4999
Q ss_pred HHHcCcceeecchhhhcc
Q 045794 383 YFRSGADKISIGSDAVYA 400 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~ 400 (578)
+.++|||.+|+||+.+.+
T Consensus 185 l~~aGad~~V~GS~if~~ 202 (220)
T d1h1ya_ 185 AASAGANCIVAGSSIFGA 202 (220)
T ss_dssp HHHHTCCEEEESHHHHTS
T ss_pred HHHCCCCEEEECHHHHCC
Confidence 999999999999999874
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.77 E-value=0.0039 Score=62.01 Aligned_cols=76 Identities=17% Similarity=0.108 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+.+..+.+.|++.+++-+-..-....++ -.+.+.++....++|||++|||++--|+.+++. +||+.|.+|+.+..
T Consensus 233 ~~~~~~a~~~g~~~~~~s~~gg~~~~~~~~~~~~l~~i~~~~~~~viasGGIR~G~Dv~KALa-LGAd~vgigrp~L~ 309 (353)
T d1p4ca_ 233 AEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALA-LGAEAVLLGRATLY 309 (353)
T ss_dssp HHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHHCSCEEECSSCCSHHHHHHHHH-TTCSCEEESHHHHH
T ss_pred hhhHHHHHhcCCchhhhcccccccccccccchhcccchhcccccceeecCCcCchHHHHHHHH-cCCCEEEEcHHHHH
Confidence 56778888999999887754333333333 446666777777899999999999999999995 99999999997654
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=95.68 E-value=0.0078 Score=60.25 Aligned_cols=123 Identities=11% Similarity=0.038 Sum_probs=78.4
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.|+++++.+..|++.|++-+-..... ..++........+..++.+...++
T Consensus 212 ~Eii~aIr~~~g~~~i~~r~s~~~~~------------------------------~~~g~~~~~~~~l~~~~~~~~~d~ 261 (364)
T d1icpa_ 212 LEIVEAVANEIGSDRVGIRISPFAHY------------------------------NEAGDTNPTALGLYMVESLNKYDL 261 (364)
T ss_dssp HHHHHHHHHHHCGGGEEEEECTTCCT------------------------------TTCCCSCHHHHHHHHHHHHGGGCC
T ss_pred HHHhhhhhcccCCcceeEEecccccc------------------------------cCCcCcchHHHHHHHHHHhhccce
Confidence 58999999999988776655322110 111111111113456666677777
Q ss_pred cEEEEeccCCCCCCC-CCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 493 GEILLNCIDCDGQGK-GFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~-G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
..+-+.......... +...+....+++.++.|++++||+ ++++..+++.+.+||.|.+|+++...+.-...+|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~vi~~g~~-~~~~ae~~l~~g~aD~V~~gR~~iadPd~~~k~~ 335 (364)
T d1icpa_ 262 AYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFISNPDLPKRFE 335 (364)
T ss_dssp SEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred eeeeeecCcccccccccccHHHHHHHHHhcCCCEEEECCC-CHHHHHHHHHcCCCceehhHHHHHHCccHHHHHH
Confidence 766666544433322 223455667888889999999997 7788888887678999999999987775444433
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=95.65 E-value=0.017 Score=57.34 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
.+.+..+.+.|++.+++-+-...+...++ -.+.+..+++.+ ++|||++|||++--|+.+++. +||+.|.+|+.+.
T Consensus 235 ~~da~~a~~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALa-LGAd~vgigrp~L 312 (359)
T d1goxa_ 235 AEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALA-LGAAGVFIGRPVV 312 (359)
T ss_dssp HHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHH-HTCSEEEECHHHH
T ss_pred hHHHHHHHHccccceecccccccccccccchhhhchhhhhccCCccceeeccCcCcHHHHHHHHH-cCCCEEEEcHHHH
Confidence 56777888999999997765544444444 456777776655 589999999999999999995 9999999998654
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=95.65 E-value=0.096 Score=50.59 Aligned_cols=194 Identities=14% Similarity=0.144 Sum_probs=116.7
Q ss_pred HHHHHHHHcCCCeEEEEeccc-CCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 311 ELARQYYKEGADEISFLNITG-FRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~-~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
.+.+..++...+-| +-+.. ... . ........++.+++...+||.+ ..+ |..++|.+++.+++|.+
T Consensus 32 avi~AAee~~sPvI--iq~s~~~~~-~-~~~~~~~~~~~~a~~~~vpv~l-----HlD-----H~~~~e~i~~ai~~Gft 97 (305)
T d1rvga_ 32 AVLEAAEEQRSPVI--LALSEGAMK-Y-GGRALTLMAVELAKEARVPVAV-----HLD-----HGSSYESVLRALRAGFT 97 (305)
T ss_dssp HHHHHHHHTTCCEE--EEEEHHHHH-H-HHHHHHHHHHHHHHHCSSCEEE-----EEE-----EECSHHHHHHHHHTTCS
T ss_pred HHHHHHHHHCCCEE--EECCccHHh-H-ccHHHHHHHHHHHhccCCcEEE-----eeh-----hccChhhhHHHHhcCCc
Confidence 44555555556533 44431 100 0 1123345677778888999864 222 46678899999999999
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHH---HhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
-|.++.+.+.-.+ |.+..+++. ..+| +++-.--|.+--. .+|
T Consensus 98 SVMiDgS~l~~ee---------Ni~~Tk~vv~~Ah~~g-----v~VEaElG~igg~--------------Ed~------- 142 (305)
T d1rvga_ 98 SVMIDKSHEDFET---------NVRETRRVVEAAHAVG-----VTVEAELGRLAGI--------------EEH------- 142 (305)
T ss_dssp EEEECCTTSCHHH---------HHHHHHHHHHHHHHTT-----CEEEEEESCCCCS--------------CC--------
T ss_pred eEEEcCccccHHH---------HHHHHHHHHHHhchhc-----eeEEeeeeeeecc--------------ccc-------
Confidence 9999554443111 234444443 4465 3333222222100 000
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCC-----CCHHHHHHHHhhCCCcEEEecCC----------
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKG-----FDMDLIKLISDAVSIPVIASSGA---------- 531 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G-----~d~~li~~l~~~~~ipVIasGGi---------- 531 (578)
+.... .+..-.++.+..+-+++-|++.+-+--=+.-|.++| .|+++++++.+.+++|+..-||=
T Consensus 143 ~~~~~-~~~~~T~peea~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~~~PLVlHGgS~vp~~~~~~~ 221 (305)
T d1rvga_ 143 VAVDE-KDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLHGASAVPPELVERF 221 (305)
T ss_dssp ------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHH
T ss_pred ccccc-cccccCCHHHHHHHHHHhCccHhhhhhhhhhcccCCCCcccchHHHHHHHHhccCCCeeccCCccccHHHHhhh
Confidence 00000 011123688888888899999888665566677655 58999999999999999999964
Q ss_pred ------------CCHHHHHHHHHhcCchHHhhhhhh
Q 045794 532 ------------GAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 532 ------------~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
-+.++++++.+ .|+..+=+++-+
T Consensus 222 ~~~g~~lhg~sG~~~e~i~~ai~-~GV~KiNi~T~l 256 (305)
T d1rvga_ 222 RASGGEIGEAAGIHPEDIKKAIS-LGIAKINTDTDL 256 (305)
T ss_dssp HHTTCCCCSCBCCCHHHHHHHHH-TTEEEEEECHHH
T ss_pred cccCcccCCCCCCCHHHHHHHHH-cCeEEEEeChHH
Confidence 13677888885 888877666644
|
| >d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Aspartyl dipeptidase PepE domain: Aspartyl dipeptidase PepE species: Salmonella typhimurium [TaxId: 90371]
Probab=95.51 E-value=0.0095 Score=55.67 Aligned_cols=77 Identities=14% Similarity=0.272 Sum_probs=60.6
Q ss_pred HHHHHHHHHHCCCeEEEeCCccC----CCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhh
Q 045794 60 VRSVRNAIRHLGFGIKDVQTPED----ILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQ 135 (578)
Q Consensus 60 ~~~i~~~L~~~Gv~v~~v~~~~d----l~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~ 135 (578)
.....+.+..+|+++..+...++ +.++|+|+++||. +......++..++.+.|+++.++|.++.|.-.|..+++.
T Consensus 50 ~~~~~~~~~~l~~~v~~l~~~~~~~~~l~~ad~I~v~GGn-~~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~v~~~ 128 (229)
T d1fyea_ 50 TDKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGGGN-TFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACP 128 (229)
T ss_dssp HHHHHHHHGGGTCEEEEGGGSSCHHHHHHHCSEEEECCSC-HHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSS
T ss_pred HHHHHHHhhhcCceeEEecccccHHHHHhhCCEEEEcCCC-HHHHHHHHHhCCHHHHHHHHHHcCCeEEEeChhHhhcCc
Confidence 34455677888999988754433 6789999999965 344556667778899999999999999999999999887
Q ss_pred hc
Q 045794 136 SS 137 (578)
Q Consensus 136 a~ 137 (578)
.+
T Consensus 129 ~~ 130 (229)
T d1fyea_ 129 TI 130 (229)
T ss_dssp BS
T ss_pred cc
Confidence 53
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.41 E-value=0.0036 Score=58.71 Aligned_cols=46 Identities=26% Similarity=0.282 Sum_probs=37.2
Q ss_pred HHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 343 LQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 343 ~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
.+.+.++.+.. .+|+.+|+||++.|+ ++++.+ +||.||+||+.+++
T Consensus 175 ~~~~~~~~k~~~~~Pv~VGFGI~s~e~-----------a~~~~~-~ADgvIVGSaive~ 221 (231)
T d2f6ua1 175 PELVAEVKKVLDKARLFYGGGIDSREK-----------AREMLR-YADTIIVGNVIYEK 221 (231)
T ss_dssp HHHHHHHHHHCSSSEEEEESCCCSHHH-----------HHHHHH-HSSEEEECHHHHHH
T ss_pred hhHHHHHHHhcCCCCEEEEeCcCCHHH-----------HHHHHh-cCCEEEEChHHhcc
Confidence 45555555554 699999999999876 988876 79999999998774
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.02 Score=56.34 Aligned_cols=83 Identities=24% Similarity=0.162 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEeccc-----CCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITG-----FRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~-----~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
.+-+++++.+.+.|++.+++.--.. ........+.+....+++.+.+.+||.+.|+|++.++ ++
T Consensus 228 ~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~-----------ae 296 (330)
T d1ps9a1 228 AETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQV-----------AD 296 (330)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHH-----------HH
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHH-----------HH
Confidence 4678899999999999888643110 0011122355677888999889999999999999865 99
Q ss_pred HHHHcC-cceeecchhhhcc
Q 045794 382 EYFRSG-ADKISIGSDAVYA 400 (578)
Q Consensus 382 ~~l~~G-a~~vv~gt~~~~~ 400 (578)
++++.| ||-|.+|-..+.|
T Consensus 297 ~~l~~g~~D~V~~gR~~iad 316 (330)
T d1ps9a1 297 DILSRGDADMVSMARPFLAD 316 (330)
T ss_dssp HHHHTTSCSEEEESTHHHHC
T ss_pred HHHHCCCcchhHhhHHHHhC
Confidence 999998 9999999998885
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=95.33 E-value=0.05 Score=49.34 Aligned_cols=78 Identities=17% Similarity=0.126 Sum_probs=57.5
Q ss_pred cCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc--cCCCCHHHHHH
Q 045794 490 LGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH--RKEVPIQSVKE 567 (578)
Q Consensus 490 ~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~--~~~~~~~~~~~ 567 (578)
..++. ++.|....|+..|.++++...+.. ...|++.+||+. ++.+.++.+ .++.||=+.|.+- .|.-++..+++
T Consensus 116 ~~~~~-~L~D~~~~g~g~~~~~~~~~~~~~-~~~~~~LAGGl~-~~Nv~~~~~-~~p~gvDvsSGvE~~~G~KD~~ki~~ 191 (200)
T d1v5xa_ 116 YPAQA-LLLDGKRPGSGEAYPRAWAKPLLA-TGRRVILAGGIA-PENLEEVLA-LRPYALDLASGVEEAPGVKSAEKLRA 191 (200)
T ss_dssp SSCSE-EEEECSSTTSCCCCCGGGGHHHHH-TTSCEEECSSCC-STTHHHHHH-HCCSEEEESGGGEEETTEECHHHHHH
T ss_pred cchhh-eeecccccCcccccchHHHhhhhh-ccCceEecCCCC-HHHHHHHHh-cCCCEEEEcCceECCCCccCHHHHHH
Confidence 34554 456667778888888776655433 356999999994 678999985 7999998899884 35667888887
Q ss_pred HHHh
Q 045794 568 HLYK 571 (578)
Q Consensus 568 ~l~~ 571 (578)
++++
T Consensus 192 f~~~ 195 (200)
T d1v5xa_ 192 LFAR 195 (200)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=95.28 E-value=0.024 Score=53.03 Aligned_cols=156 Identities=12% Similarity=0.093 Sum_probs=103.0
Q ss_pred cccEEEeCCc-cccccCCCCccChHHHHHHHHHcCcc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEE
Q 045794 354 FVPLTVGGGI-RDFTDANGRHYSSLEVASEYFRSGAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVV 430 (578)
Q Consensus 354 ~~pi~~gGGi-r~~~d~~~~~~~~~~~~~~~l~~Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~ 430 (578)
.+|+.+..|+ .|.|+ -.+.++++++.|.. |+=+|. .. ..+.++++.+.+|. +-+
T Consensus 4 ~i~~~~s~g~~~~~e~-------~~~~~~~~~~~Gf~~~Kikvg~---~~-----------D~~~v~~ir~~~~~--~~l 60 (244)
T d1wufa1 4 SIKVGVSIGLQQNVET-------LLQLVNQYVDQGYERVKLKIAP---NK-----------DIQFVEAVRKSFPK--LSL 60 (244)
T ss_dssp EEEBCEEECCCSCHHH-------HHHHHHHHHHHTCCEEEEECBT---TB-----------SHHHHHHHHTTCTT--SEE
T ss_pred eEEEeEEeCCCCCHHH-------HHHHHHHHHHCCCCEEEEEeCC---cH-----------HHHHHHHHHHhccc--hhh
Confidence 3667667787 45554 35668888888976 444453 11 13778899888874 456
Q ss_pred EEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCC
Q 045794 431 SIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFD 510 (578)
Q Consensus 431 slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d 510 (578)
.+|+.. +|... ... .+++++++++..+ +.=..--|
T Consensus 61 ~vDaN~----------------------------------~~~~~---~a~-~~~~l~~~~~~wi-------EeP~~~~d 95 (244)
T d1wufa1 61 MADANS----------------------------------AYNRE---DFL-LLKELDQYDLEMI-------EQPFGTKD 95 (244)
T ss_dssp EEECTT----------------------------------CCCGG---GHH-HHHTTGGGTCSEE-------ECCSCSSC
T ss_pred hhhhhc----------------------------------cccch---hhh-hhhcccccchhhh-------cCcccccc
Confidence 678543 23221 233 4577778776543 11122237
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeec
Q 045794 511 MDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 577 (578)
Q Consensus 511 ~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~ 577 (578)
++.++++++.+++||.+.-.+.++.++.++.+...++.+.+--....|-.....+.+.+...|++|-
T Consensus 96 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~ki~~~a~~~gi~v~ 162 (244)
T d1wufa1 96 FVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVW 162 (244)
T ss_dssp SHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHTCCSEEEECTGGGTSHHHHHHHHHHHHHTTCEEE
T ss_pred hhhhhccccccccccccCccccchhhhhhhccccccceeecccccccchhhHHHHHHHHHHcCCEEe
Confidence 8899999999999999999999999999999743456655333334454446777788888888763
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=95.23 E-value=0.12 Score=50.50 Aligned_cols=191 Identities=17% Similarity=0.168 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHcCCCeEEE------EecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 308 KPVELARQYYKEGADEISF------LNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~------~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
...++|+.+.+.|++.+.= ......++ .+ ..-+++++++.+++++|+.. -|.+.++ ++
T Consensus 109 ~~~~~A~~lke~g~~~~r~g~fKpRtsp~sf~g--~g-~~gL~~l~~~k~~~glpvvT--dV~~~~~-----------~~ 172 (338)
T d1vr6a1 109 MLMETAHFLSELGVKVLRGGAYKPRTSPYSFQG--LG-EKGLEYLREAADKYGMYVVT--EALGEDD-----------LP 172 (338)
T ss_dssp HHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCC--CT-HHHHHHHHHHHHHHTCEEEE--ECSSGGG-----------HH
T ss_pred HHHHHHHHHHHhCccccccceeccccccccccc--ch-HHHHHHHHHHHhhcCceeEE--eccchhh-----------hh
Confidence 4678999999999884331 12222221 12 45689999999999999976 4677666 66
Q ss_pred HHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCC
Q 045794 382 EYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEE 461 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (578)
.+.+. +|.+=||+-..++ .++|+++.+ .+ +.|. +|++.
T Consensus 173 ~~~e~-~DilQI~A~~~~n------------~~LL~~~g~-t~--kpV~---lKkG~----------------------- 210 (338)
T d1vr6a1 173 KVAEY-ADIIQIGARNAQN------------FRLLSKAGS-YN--KPVL---LKRGF----------------------- 210 (338)
T ss_dssp HHHHH-CSEEEECGGGTTC------------HHHHHHHHT-TC--SCEE---EECCT-----------------------
T ss_pred hhhce-eeeEEechhhccC------------HHHHHHhhc-cC--CcEE---ecCcc-----------------------
Confidence 66665 8988889766663 588888865 23 2222 23321
Q ss_pred cceEEEEEcccccCCCCCHH---HHHHHHHHcCCcEEEEeccCC---CC-CCCCCCHHHHHHHHhhCCCcEEE----ecC
Q 045794 462 YAWYQCTVNGGREGRPIGAY---ELAKAVEDLGAGEILLNCIDC---DG-QGKGFDMDLIKLISDAVSIPVIA----SSG 530 (578)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~---e~~~~~~~~G~~~ii~tdi~~---dG-~~~G~d~~li~~l~~~~~ipVIa----sGG 530 (578)
..++. ..++.+.+.|-..|+++.+.. .+ +..-.|+..+..+++....|||+ +||
T Consensus 211 ---------------~~s~~e~l~aae~i~~~Gn~~vilcERG~~t~~~~~~~~lD~~~i~~~k~~~~lPVi~DpsHs~G 275 (338)
T d1vr6a1 211 ---------------MNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGG 275 (338)
T ss_dssp ---------------TCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECHHHHHC
T ss_pred ---------------ccchhhhhhhHHHHHhcCCccceeeeccccccccccccchhhcccceeeccccCceeeCCCCCCC
Confidence 22344 456667789999999998753 22 22235888888888888899986 566
Q ss_pred CCCH-HHHHHHHHhcCchHHhhhh------hhcc--CCCCHHHHHHHHHh
Q 045794 531 AGAV-EHFSDVFRKTNASAALAAG------IFHR--KEVPIQSVKEHLYK 571 (578)
Q Consensus 531 i~s~-eDi~~l~~~~G~~gv~vgs------a~~~--~~~~~~~~~~~l~~ 571 (578)
-+.. ..+.++.-..|+||+++=. |+.+ ..+++.++++.+++
T Consensus 276 ~r~~v~~larAAvA~GadGl~iE~Hp~P~~AlsDg~q~l~~~~~~~ll~~ 325 (338)
T d1vr6a1 276 RRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQE 325 (338)
T ss_dssp SGGGHHHHHHHHHHHTCSEEEEEBCSCGGGCSSCGGGCBCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhCCCEEEEEeCCCcccCCCCccccCCHHHHHHHHHH
Confidence 5544 2344443347999988754 2222 23677777777654
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=95.22 E-value=0.019 Score=53.72 Aligned_cols=143 Identities=16% Similarity=0.125 Sum_probs=98.3
Q ss_pred HHHHHHHH-cCcc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 378 EVASEYFR-SGAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 378 ~~~~~~l~-~Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
+.+.+.++ .|.. |+=+|...++.+ .+.++.+.+.+|++ +-+.+|+..
T Consensus 22 ~~~~~~~~~~G~~~~KiKvG~~~~~~D-----------i~~i~~ir~~~g~~-~~l~vDaN~------------------ 71 (242)
T d1muca1 22 AEARHMLEIRRHRVFKLKIGANPVEQD-----------LKHVVTIKRELGDS-ASVRVDVNQ------------------ 71 (242)
T ss_dssp HHHHHHHHTTSCSEEEEECSSSCHHHH-----------HHHHHHHHHHHGGG-SEEEEECTT------------------
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHH-----------HHHHHHHHHHhCCC-CEEEEecCC------------------
Confidence 44555454 4765 455565444322 36788998989864 778888643
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|.. -+..++++.++++++..+ +.-..--|++.++++++.+++||.+.-.+.+.
T Consensus 72 ----------------~~~~---~~A~~~~~~l~~~~i~~i-------EeP~~~~d~~~~~~L~~~~~~pIa~~E~~~~~ 125 (242)
T d1muca1 72 ----------------YWDE---SQAIRACQVLGDNGIDLI-------EQPISRINRGGQVRLNQRTPAPIMADESIESV 125 (242)
T ss_dssp ----------------CBCH---HHHHHHHHHHHHTTCCCE-------ECCBCTTCHHHHHHHHHHCSSCEEESTTCSSH
T ss_pred ----------------CCcH---HHHHHHHHHhhhhhHHHh-------hcchhhhhhhhhhhhhhhhhheeecccccccc
Confidence 2321 146789999999887543 22233348899999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.++..+++..-++.+.+--....|-.....+.+.+++.|++|
T Consensus 126 ~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i~~~A~~~gi~~ 167 (242)
T d1muca1 126 EDAFSLAADGAASIFALKIAKNGGPRAVLRTAQIAEAAGIGL 167 (242)
T ss_dssp HHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEE
T ss_pred cchhhhhhcccccccccccccchhHHHHHHHHHHHHhCCCCc
Confidence 999999974446655544344455555777888888888876
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=95.15 E-value=0.008 Score=58.24 Aligned_cols=74 Identities=20% Similarity=0.208 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCC---------C-----------CCC-CHHHHHHHHhhC-CCcEEEecCCCCHHHHH
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQ---------G-----------KGF-DMDLIKLISDAV-SIPVIASSGAGAVEHFS 538 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~---------~-----------~G~-d~~li~~l~~~~-~ipVIasGGi~s~eDi~ 538 (578)
.+.++.+.+.|++.|++-+. .|+ . .|. -.+.+.++.+.. ++|||+.|||++-.|+.
T Consensus 173 ~e~a~~~~~aGvd~i~vsn~--gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~~i~Ii~dGGIr~g~Dv~ 250 (310)
T d1vcfa1 173 REAALALRDLPLAAVDVAGA--GGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGA 250 (310)
T ss_dssp HHHHHHHTTSCCSEEECCCB--TSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHH
T ss_pred HHHHHHHHHcCCCEEEeccc--cccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcCCCeEEeCCCCCchHHHH
Confidence 67788899999998885432 121 0 111 234445554443 79999999999999999
Q ss_pred HHHHhcCchHHhhhhhhcc
Q 045794 539 DVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 539 ~l~~~~G~~gv~vgsa~~~ 557 (578)
+++. +||++|++|+++..
T Consensus 251 KALa-lGAdaV~iGr~~l~ 268 (310)
T d1vcfa1 251 KALA-LGADLLAVARPLLR 268 (310)
T ss_dssp HHHH-HTCSEEEECGGGHH
T ss_pred HHHH-hCCCEeeEhHHHHH
Confidence 9995 99999999998864
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=95.04 E-value=0.013 Score=56.06 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCC-CchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLG-DLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
..|.+..+...+..-..||++-..+..+.... .....+.++++.+.+++|+.+|=||++.+| ++.+
T Consensus 154 tT~~eRi~~i~~~s~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~-----------v~~~-- 220 (271)
T d1ujpa_ 154 TSTDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKAT-----------AAQA-- 220 (271)
T ss_dssp TCCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTCCSCEEEESCCCSHHH-----------HHHH--
T ss_pred CcchHHHHHHHHhCcchhhhhcccCccCccccchHHHHHHHHhhhccccCCeEEeCCCCCHHH-----------HHHh--
Confidence 35667788887776778999998876543211 123467788888888999999999999876 7765
Q ss_pred cCcceeecchhhhc
Q 045794 386 SGADKISIGSDAVY 399 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~ 399 (578)
.+||.|||||+.++
T Consensus 221 ~~ADGvIVGSAiV~ 234 (271)
T d1ujpa_ 221 AVADGVVVGSALVR 234 (271)
T ss_dssp TTSSEEEECHHHHH
T ss_pred CCCCEEEEcHHHHH
Confidence 59999999999886
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=94.89 E-value=0.054 Score=50.60 Aligned_cols=141 Identities=14% Similarity=0.117 Sum_probs=99.8
Q ss_pred HHHHHHcCcce--eecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCC
Q 045794 380 ASEYFRSGADK--ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGP 457 (578)
Q Consensus 380 ~~~~l~~Ga~~--vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~ 457 (578)
++.+.+.|... +=+|....+.+ .+.++.+.+.+|.+ +-+.+|+...
T Consensus 25 ~~~~~~~Gf~~~KiKvG~~~~~~D-----------~~~v~~ir~~~g~~-~~l~vDaN~~-------------------- 72 (244)
T d2chra1 25 VEMIERRRHNRFKVKLGFRSPQDD-----------LIHMEALSNSLGSK-AYLRVDVNQA-------------------- 72 (244)
T ss_dssp HHHHHTTSCCEEEEECSSSCHHHH-----------HHHHHHHHHHTTTT-SEEEEECTTC--------------------
T ss_pred HHHHHhCCCCEEEEEcCCCCHHHH-----------HHHHHHHHHhcCCC-ceEEEeCCCC--------------------
Confidence 34445568764 44454333321 36788999999865 6677886432
Q ss_pred CCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 045794 458 NGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHF 537 (578)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi 537 (578)
|.. -+..++++++++.++..+ = .=..--|++.++++++.+++||...-.+.+.+++
T Consensus 73 --------------~~~---~~A~~~~~~l~~~~i~~i--E-----eP~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~ 128 (244)
T d2chra1 73 --------------WDE---QVASVYIPELEALGVELI--E-----QPVGRENTQALRRLSDNNRVAIMADESLSTLASA 128 (244)
T ss_dssp --------------CCT---HHHHHHHHHHHTTTCCEE--E-----CCSCSSCHHHHHHHHHHCSSEEEESSSCCSHHHH
T ss_pred --------------cch---HHHHHHHHHHhhhhHHHH--h-----hhhhhccchhhhhhccceeeeeeecccccccchh
Confidence 321 146788899999886421 1 1112227899999999999999999999999999
Q ss_pred HHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 538 SDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 538 ~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.++.+...++.+.+.-....|-.....+.+.+.+.|++|
T Consensus 129 ~~~i~~~~~d~v~~d~~~~GGit~~~~i~~~a~~~gi~~ 167 (244)
T d2chra1 129 FDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIAS 167 (244)
T ss_dssp HHHHTTTCCSEECCCHHHHTSHHHHHHHHHHHHHHTCEE
T ss_pred hhhhhcceeEEEeeccccccchHHHHHHHHHHHHcCCCe
Confidence 999975568888777666667777888888888889876
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=94.75 E-value=0.054 Score=50.08 Aligned_cols=154 Identities=19% Similarity=0.247 Sum_probs=105.7
Q ss_pred CccccccCCCCccChHHHHHHHHHcCcc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEecccccc
Q 045794 362 GIRDFTDANGRHYSSLEVASEYFRSGAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYI 439 (578)
Q Consensus 362 Gir~~~d~~~~~~~~~~~~~~~l~~Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~ 439 (578)
|+.+.|+ -.+.++++++.|.. |+=+|..-+..+ .+.++++.+.+|++ +-+.+|+..
T Consensus 12 ~~~~pe~-------~~~~a~~~~~~G~~~~Kikig~~~~~~d-----------~~~i~~ir~~~g~~-~~i~vD~N~--- 69 (234)
T d1jpma1 12 SVNSPEE-------MAADAENYLKQGFQTLKIKVGKDDIATD-----------IARIQEIRKRVGSA-VKLRLDANQ--- 69 (234)
T ss_dssp CCSCHHH-------HHHHHHHHHHTTCCEEEEECSSSCHHHH-----------HHHHHHHHHHHGGG-SEEEEECTT---
T ss_pred cCCCHHH-------HHHHHHHHHHCCCCEEEEECCCCCHHHH-----------HHHHHHHHHHcCch-hhhhhhccc---
Confidence 5666665 35778999999977 555564333321 36788888888864 666788643
Q ss_pred CCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHh
Q 045794 440 THPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISD 519 (578)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~ 519 (578)
+|.. -+..++++++++.+.+-..+=.-- .--|++.++++++
T Consensus 70 -------------------------------~~~~---~~a~~~~~~le~~~~~i~~~EeP~-----~~~d~~~~~~l~~ 110 (234)
T d1jpma1 70 -------------------------------GWRP---KEAVTAIRKMEDAGLGIELVEQPV-----HKDDLAGLKKVTD 110 (234)
T ss_dssp -------------------------------CSCH---HHHHHHHHHHHHTTCCEEEEECCS-----CTTCHHHHHHHHH
T ss_pred -------------------------------ccch---HHHHHHHHHHHhccCceeeecCCc-----cccCHHHHHHhhc
Confidence 1221 135778888888766633333322 2238899999999
Q ss_pred hCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 520 AVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 520 ~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
.+++||.......+..++.++++...++.+.+--....|-.....+.+.+.+.|++|
T Consensus 111 ~~~~pia~gE~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i~~~a~~~g~~~ 167 (234)
T d1jpma1 111 ATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVEC 167 (234)
T ss_dssp HCSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCE
T ss_pred cccceeecccccccchhhhhhhccCCcCeEEEeeecCCCHHHHHHHHHHHHhcCeeE
Confidence 999999999999999999999874446666654444555555777888888888875
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=94.67 E-value=0.014 Score=54.46 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecc-cCCCCCCCCchhHHHHHHHhh-----hccccEEEeCCccccccCCCCccChHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNIT-GFRDFPLGDLPMLQVLRLTSE-----NVFVPLTVGGGIRDFTDANGRHYSSLEVA 380 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~-~~~~~~~~~~~~~~~i~~i~~-----~~~~pi~~gGGir~~~d~~~~~~~~~~~~ 380 (578)
..|++..+.|... +|.|++.-.+ |..+... ....++-|+++.+ ...+.|+++|||+.. .+
T Consensus 128 ~T~~~~l~~~l~~-vD~VllM~V~PGf~GQ~f-~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~~------------~i 193 (230)
T d1rpxa_ 128 GTPLTAIEYVLDA-VDLVLIMSVNPGFGGQSF-IESQVKKISDLRKICAERGLNPWIEVDGGVGPK------------NA 193 (230)
T ss_dssp TCCGGGGTTTTTT-CSEEEEESSCTTCSSCCC-CTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTT------------TH
T ss_pred CCCHHHHHHHHhh-CCEEEEEEecCCcccchh-hhhhHHHHHHHHHHHHhcCCceEEEEECCcCHH------------HH
Confidence 3455555555544 8999998776 4433222 2344555555432 246889999999984 49
Q ss_pred HHHHHcCcceeecchhhhcc
Q 045794 381 SEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 381 ~~~l~~Ga~~vv~gt~~~~~ 400 (578)
..+.++|||.+|+||+.+.+
T Consensus 194 ~~l~~~Gad~~V~GS~if~~ 213 (230)
T d1rpxa_ 194 YKVIEAGANALVAGSAVFGA 213 (230)
T ss_dssp HHHHHHTCCEEEESHHHHTS
T ss_pred HHHHHcCCCEEEEChHHHCC
Confidence 99999999999999999875
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.67 E-value=0.023 Score=55.92 Aligned_cols=92 Identities=21% Similarity=0.225 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCC------------C---CCCCchhHHHHHHHhhhc--cccEEEeCCccccccCC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRD------------F---PLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~------------~---~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~ 370 (578)
+..++|+...+.|++.+..++-..... + ..-+...++.++++++.+ .+||.-.|||.+.+|
T Consensus 226 ~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~~~~~~ipIIG~GGI~s~~D-- 303 (336)
T d1f76a_ 226 ELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIA-- 303 (336)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHH--
T ss_pred hhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHcCCCCeEEEECCCCCHHH--
Confidence 556788888889999998876532111 0 111234467778888776 699988899999977
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
+.+++.+||+-|=++|+.+.+. |.+++++.+
T Consensus 304 ---------a~e~i~aGAsaVQv~Tal~~~G-----------p~ii~~I~~ 334 (336)
T d1f76a_ 304 ---------AREKIAAGASLVQIYSGFIFKG-----------PPLIKEIVT 334 (336)
T ss_dssp ---------HHHHHHHTCSEEEESHHHHHHC-----------HHHHHHHHH
T ss_pred ---------HHHHHHcCCcHHHHHHHHHhcC-----------hHHHHHHHh
Confidence 9999999999999999986543 567777765
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=94.65 E-value=0.014 Score=56.71 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=45.0
Q ss_pred hhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 341 PMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 341 ~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
..++.++++.+.+ .+||...|||++.+| +.+++.+||+-|-++|+.+.+-++++
T Consensus 227 ~al~~i~~i~~~~~~~~~Iig~GGI~s~~D-----------a~~~i~aGA~~Vql~tal~~~Gp~~i 282 (311)
T d1juba_ 227 TALANVRAFYTRLKPEIQIIGTGGIETGQD-----------AFEHLLCGATMLQIGTALHKEGPAIF 282 (311)
T ss_dssp HHHHHHHHHHTTSCTTSEEEEESSCCSHHH-----------HHHHHHHTCSEEEECHHHHHHCTHHH
T ss_pred hHHHHHHHHHHhcCCCeeEEecCCcCCHHH-----------HHHHHHcCCCceeeeHhhHhcChHHH
Confidence 3567788888776 499999999999987 99999999999999999987644444
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.63 E-value=0.038 Score=50.92 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCCeEEEEecc-cCCCCCCCCchhHHHHHHHhh-----hccccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 310 VELARQYYKEGADEISFLNIT-GFRDFPLGDLPMLQVLRLTSE-----NVFVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~-~~~~~~~~~~~~~~~i~~i~~-----~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
++..+.|.+ -++.+.+.=.+ |..+.. -....++-|+++++ ...++|+++|||+.. .++.+
T Consensus 120 ~~~~~~~l~-~id~vliM~V~pG~~Gq~-f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn~~------------~i~~l 185 (217)
T d2flia1 120 ATALEPLLD-LVDQVLIMTVNPGFGGQA-FIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNK------------TIRAC 185 (217)
T ss_dssp GGGGGGGTT-TCSEEEEESSCTTCSSCC-CCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTT------------THHHH
T ss_pred hhHHHhHHh-hcCEEEEEEEcCcccccc-cchhhHHHHHHHHHHHHhcCCCeEEEEeCCCCHH------------HHHHH
Confidence 333343333 37888887666 333322 23444555555553 235789999999873 49999
Q ss_pred HHcCcceeecchhhhcc
Q 045794 384 FRSGADKISIGSDAVYA 400 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~ 400 (578)
.++|||.+|+||+.++.
T Consensus 186 ~~aGad~~V~Gsaif~~ 202 (217)
T d2flia1 186 YEAGANVFVAGSYLFKA 202 (217)
T ss_dssp HHHTCCEEEESHHHHTS
T ss_pred HHCCCCEEEEchHHhCC
Confidence 99999999999998874
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=94.54 E-value=0.037 Score=52.03 Aligned_cols=81 Identities=26% Similarity=0.305 Sum_probs=52.5
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
..++...+.|++.|= --.|... .+...+.++.+.+.+ .+.|-+.||||+.+| +.+++++|+
T Consensus 169 ~a~~ia~~aGadfvK--TSTGf~~----~gat~e~V~~m~~~~~~~~giKasGGIrt~~~-----------a~~~i~aGa 231 (251)
T d1o0ya_ 169 AACVISKLAGAHFVK--TSTGFGT----GGATAEDVHLMKWIVGDEMGVKASGGIRTFED-----------AVKMIMYGA 231 (251)
T ss_dssp HHHHHHHHTTCSEEE--CCCSSSS----CCCCHHHHHHHHHHHCTTSEEEEESSCCSHHH-----------HHHHHHTTC
T ss_pred HHHHHHHHhCcceee--ccCCCCC----CCcCHHHHHHHHHHhCCCceEeccCCcCCHHH-----------HHHHHHHhh
Confidence 455666678998432 1123211 123344444444333 366778999999876 999999999
Q ss_pred ceeecchhhhccchhhhhccccCCchHHHHHHHhCC
Q 045794 389 DKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYG 424 (578)
Q Consensus 389 ~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 424 (578)
++ |||..-. ++++++.++||
T Consensus 232 ~r--iGtSs~~--------------~i~~~~~~r~G 251 (251)
T d1o0ya_ 232 DR--IGTSSGV--------------KIVQGGEERYG 251 (251)
T ss_dssp SE--EEESCHH--------------HHHHHHHHHCC
T ss_pred HH--hCCCcHH--------------HHhhhHhhcCC
Confidence 98 4775443 67899988887
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.017 Score=57.59 Aligned_cols=87 Identities=21% Similarity=0.124 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCC---------------CCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRD---------------FPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDAN 370 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~---------------~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~ 370 (578)
+..++|+...+.|++.+..++-..... +...+...+..++.+.+.+ ++||...|||.+.+|
T Consensus 235 ~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~D-- 312 (367)
T d1d3ga_ 235 DKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQD-- 312 (367)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHH--
T ss_pred hhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCCCccEEEECCCCCHHH--
Confidence 566788888899999999875421110 1111244566777776654 699999999999977
Q ss_pred CCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 371 GRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 371 ~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
+.+++.+||+-|=++|+.+...|.++
T Consensus 313 ---------a~e~i~aGAs~VQi~Ta~~~~Gp~ii 338 (367)
T d1d3ga_ 313 ---------ALEKIRAGASLVQLYTALTFWGPPVV 338 (367)
T ss_dssp ---------HHHHHHHTCSEEEESHHHHHHCTHHH
T ss_pred ---------HHHHHHcCCCHHHhhHHHHhcCcHHH
Confidence 99999999999999999865444444
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=94.50 E-value=0.05 Score=50.72 Aligned_cols=136 Identities=12% Similarity=0.115 Sum_probs=96.0
Q ss_pred HcCcc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 385 RSGAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 385 ~~Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
+.|.. |+=+|...+..+ .+.++.+.+.+|+ .+-+.+|+...
T Consensus 30 ~~G~~~~KiKvG~~~~~~D-----------i~~v~~ir~~~g~-~~~l~vDaN~~------------------------- 72 (243)
T d1nu5a1 30 TRRHNRFKVKLGARTPAQD-----------LEHIRSIVKAVGD-RASVRVDVNQG------------------------- 72 (243)
T ss_dssp TTSCSEEEEECSSSCHHHH-----------HHHHHHHHHHHGG-GCEEEEECTTC-------------------------
T ss_pred hCCCCEEEEEeCCCCHHHH-----------HHHHHHHHHHhCc-ccceEEECCCC-------------------------
Confidence 45765 455575444321 3678888899985 57888996432
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFR 542 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~ 542 (578)
|.- -+..++++++++.++..+ +.=...-|++.++++++.+++||...--+.+.+++..+.+
T Consensus 73 ---------~~~---~~A~~~~~~l~~~~~~~i-------EeP~~~~~~~~~~~l~~~~~ipIa~gE~~~~~~~~~~~i~ 133 (243)
T d1nu5a1 73 ---------WDE---QTASIWIPRLEEAGVELV-------EQPVPRANFGALRRLTEQNGVAILADESLSSLSSAFELAR 133 (243)
T ss_dssp ---------CCH---HHHHHHHHHHHHHTCCEE-------ECCSCTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHH
T ss_pred ---------ccc---hhHHHHHHHhcchhhhhh-------hhhhhhccccccccchhccccccccccccccchhhhhccc
Confidence 321 146788889998886543 1112223789999999999999999999999999999997
Q ss_pred hcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 543 KTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 543 ~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
...++.+.+--....|-.....+.+.+...|++|
T Consensus 134 ~~~~d~~~~d~~~~GGit~~~~i~~~a~~~gi~~ 167 (243)
T d1nu5a1 134 DHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISS 167 (243)
T ss_dssp TTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEE
T ss_pred cccccccccccccccchHHHHHHHHHHHHcCCCc
Confidence 5446776655555556556778888888888876
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.44 E-value=0.047 Score=55.30 Aligned_cols=76 Identities=9% Similarity=0.035 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHh-----h--CCCcEEEecCCCCHHHHHHHHHhcCchHHhhh
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISD-----A--VSIPVIASSGAGAVEHFSDVFRKTNASAALAA 552 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~-----~--~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vg 552 (578)
.+-+..+.+.|++.+++-+-.....-.++ ....+.++.+ . -++|||++|||++--|+.+++. +||++|.+|
T Consensus 257 ~~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALA-LGAdaVgig 335 (414)
T d1kbia1 257 TEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALC-LGAKGVGLG 335 (414)
T ss_dssp HHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHH-HTCSEEEEC
T ss_pred hHHHHHHHhcCCcceeeccccccccccccccccchhhhhhhhhhhccCCceeEEecCCcCcHHHHHHHHH-cCCCEEEEc
Confidence 45667788999999987764333222222 2233333322 1 2589999999999999999995 999999999
Q ss_pred hhhcc
Q 045794 553 GIFHR 557 (578)
Q Consensus 553 sa~~~ 557 (578)
+.+..
T Consensus 336 rp~L~ 340 (414)
T d1kbia1 336 RPFLY 340 (414)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=94.44 E-value=0.04 Score=50.91 Aligned_cols=81 Identities=14% Similarity=0.036 Sum_probs=50.0
Q ss_pred HHHHHHHcCCCeEEEEecccCCCCCCCCc----hhHHHHHHHhhh-ccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 312 LARQYYKEGADEISFLNITGFRDFPLGDL----PMLQVLRLTSEN-VFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 312 ~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~----~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.++.+.+.+..-|-+--.-++-.+..... .....++.+.+. -++||.+||||++.+| ++.+...
T Consensus 128 ~~~~~~~~~~~iiAyEpvwaIGtg~~~~~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~-----------~~~~~~~ 196 (224)
T d1hg3a_ 128 VSAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGED-----------VKKAIEL 196 (224)
T ss_dssp HHHHHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHH-----------HHHHHHT
T ss_pred HHHhhhhcccceEEecchHhhccccCCCchhhhhhhhhhhhhhhhccccceEEeCCcCCHHH-----------HHHHHhC
Confidence 34555566666555534433321111111 112333333332 2689999999999866 8899999
Q ss_pred Ccceeecchhhhccchhh
Q 045794 387 GADKISIGSDAVYAAEDY 404 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~ 404 (578)
|+|-+.|||+.++. ++|
T Consensus 197 g~dGvLVGsAsl~a-~d~ 213 (224)
T d1hg3a_ 197 GTVGVLLASGVTKA-KDP 213 (224)
T ss_dssp TCSEEEESHHHHTC-SSH
T ss_pred CCCEEEEcceeecC-cCH
Confidence 99999999999983 444
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=94.43 E-value=0.024 Score=55.09 Aligned_cols=89 Identities=22% Similarity=0.220 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH-
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR- 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~- 385 (578)
.+..++++.+.+.|++.|.|===.+.+ .. ....+.+.|+++.+ .+||.+-|||.+.+| +.+.++
T Consensus 136 ~~~~~~~~~l~~~G~~~itvH~Rt~~q-~~-~~~a~~~~i~~~~~--~ipvi~NGdI~s~~d-----------~~~~l~~ 200 (305)
T d1vhna_ 136 NEVEEIYRILVEEGVDEVFIHTRTVVQ-SF-TGRAEWKALSVLEK--RIPTFVSGDIFTPED-----------AKRALEE 200 (305)
T ss_dssp CCHHHHHHHHHHTTCCEEEEESSCTTT-TT-SSCCCGGGGGGSCC--SSCEEEESSCCSHHH-----------HHHHHHH
T ss_pred chhhHHHHHHHHhCCcEEEechhhhhh-cc-ccchhhhHHHhhhh--hhhhhcccccccHHH-----------HHHHHHh
Confidence 466799999999999988864222322 11 22456788888766 589999999999977 888876
Q ss_pred cCcceeecchhhhccchhhhhccccCCchHHHHHHHh
Q 045794 386 SGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRV 422 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (578)
.|+|.|.||-.++.| |-++.++.+.
T Consensus 201 tg~dgVMiGRgal~n------------P~if~~i~~~ 225 (305)
T d1vhna_ 201 SGCDGLLVARGAIGR------------PWIFKQIKDF 225 (305)
T ss_dssp HCCSEEEESGGGTTC------------TTHHHHHHHH
T ss_pred cCCCeEehhHHHHHh------------hhHhhhhhhh
Confidence 599999999999995 3566777654
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=94.29 E-value=0.072 Score=49.02 Aligned_cols=145 Identities=15% Similarity=0.078 Sum_probs=96.9
Q ss_pred HHHHHHHHHcCcc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.|.++++.+.|.. |+=+|...+.++ .+.++.+.+.+|++ +-+.+|+..
T Consensus 17 ~e~~~~~~~~G~~~~KikvG~~~~~~d-----------i~~i~~ir~~~g~~-~~l~vDaN~------------------ 66 (227)
T d2mnra1 17 TERAVTAAELGFRAVKTKIGYPALDQD-----------LAVVRSIRQAVGDD-FGIMVDYNQ------------------ 66 (227)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSHHHH-----------HHHHHHHHHHHCTT-SEEEEECTT------------------
T ss_pred HHHHHHHHHCCCCEEEEccCCCCHHHH-----------HHHHHHHHHHhCCC-cEEEEeccc------------------
Confidence 3556777777865 444465434322 36788999999865 666788643
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|.- -...++++.+++.++..+= + =...-|++.++++++.+++||.+.-.+.+.
T Consensus 67 ----------------~~~~---~~A~~~~~~l~~~~~~~iE--e-----P~~~~~~~~~~~l~~~~~ipia~gE~~~~~ 120 (227)
T d2mnra1 67 ----------------SLDV---PAAIKRSQALQQEGVTWIE--E-----PTLQHDYEGHQRIQSKLNVPVQMGENWLGP 120 (227)
T ss_dssp ----------------CSCH---HHHHHHHHHHHHHTCSEEE--C-----CSCTTCHHHHHHHHHTCSSCEEECTTCCSH
T ss_pred ----------------cCCh---HHHHHHHHHhhhchhhhhc--C-----cccccchhhhHHHHHHcCCccccCceeEee
Confidence 2311 1467889999998864331 1 122237899999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeec
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 577 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~ 577 (578)
+++..+++...++.+.+--....|-....++.+...+.|++|-
T Consensus 121 ~~~~~~~~~~~~d~~~~d~~~~GGit~~~~i~~~a~~~g~~~~ 163 (227)
T d2mnra1 121 EEMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMS 163 (227)
T ss_dssp HHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHHTCCBC
T ss_pred chhhhhHhcCceeeeecccccccchhhHHHHHHHHHHcCCccc
Confidence 9999999754555554333333344446777778888887763
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=94.26 E-value=0.073 Score=48.15 Aligned_cols=163 Identities=12% Similarity=0.067 Sum_probs=97.0
Q ss_pred CccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCC
Q 045794 362 GIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITH 441 (578)
Q Consensus 362 Gir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~ 441 (578)
||++.+| ++.+.++|||.+=+- .....|-+ .+++...++.+....+.+-|.++.....+.
T Consensus 7 GIt~~~d-----------~~~~~~~gaD~iGfi--f~~~SpR~------Vs~~~a~~i~~~~~~~~V~Vfv~~~~~~i~- 66 (198)
T d1piia1 7 GLTRGQD-----------AKAAYDAGAIYGGLI--FVATSPRC------VNVEQAQEVMAAAPLQYVGVFRNHDIADVV- 66 (198)
T ss_dssp CCCSHHH-----------HHHHHHHTCSEEEEE--CCTTCTTB------CCHHHHHHHHHHCCCEEEEEESSCCHHHHH-
T ss_pred CCCcHHH-----------HHHHHhCCCCEEEEE--ccCCCCCC------cCHHHHHHhhhhcccccceeeeccchhhHH-
Confidence 8999876 999999999965442 22222223 357888888888765665555543221110
Q ss_pred CCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHc-----------------------CCcEEEEe
Q 045794 442 PNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDL-----------------------GAGEILLN 498 (578)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~-----------------------G~~~ii~t 498 (578)
..++.. +.+ .+..+|-. + .+.++.+.+. .++.++ .
T Consensus 67 ------~~~~~~--~~d-------~iQlHG~e-----~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l-l 124 (198)
T d1piia1 67 ------DKAKVL--SLA-------AVQLHGNE-----E-QLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYV-L 124 (198)
T ss_dssp ------HHHHHH--TCS-------EEEECSCC-----C-HHHHHHHHHHSCTTSEEEEEEECSSSCCCCCCTTCCEEE-E
T ss_pred ------Hhhhcc--ccc-------ceeecCCc-----c-HHHHHHHhccccccccceeccchhhhhhHHHhhhhcccc-c
Confidence 011110 110 35555521 1 1223333221 123333 3
Q ss_pred ccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc--CCCCHHHHHHHHHh
Q 045794 499 CIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR--KEVPIQSVKEHLYK 571 (578)
Q Consensus 499 di~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~--~~~~~~~~~~~l~~ 571 (578)
|-..-|+.+-+||++++. ....|++.+||+ +++.+.++.+ .++.||=+.|.+-. |.-+...+++++.+
T Consensus 125 d~~~gGtG~~fdw~~~~~---~~~~~~~LAGGl-~~~Nv~~a~~-~~p~gvDvsSGvE~~pG~KD~~ki~~f~~~ 194 (198)
T d1piia1 125 DNGQGGSGQRFDWSLLNG---QSLGNVLLAGGL-GADNCVEAAQ-TGCAGLDFNSAVESQPGIKDARLLASVFQT 194 (198)
T ss_dssp ESCSCCSSCCCCGGGGTT---SCCTTEEEESSC-CTTTHHHHHT-TCCSEEEECGGGEEETTEECHHHHHHHHHH
T ss_pred CCcccccceeeehhhhcc---cccceeEEecCC-CHHHHHHHHh-cCCCEEEeCCcccCCCCCcCHHHHHHHHHH
Confidence 434557777789988654 345699999999 7899999985 89999988888843 44567777776653
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.26 E-value=0.07 Score=52.42 Aligned_cols=92 Identities=11% Similarity=-0.054 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccC-------CCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGF-------RDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEV 379 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~-------~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~ 379 (578)
......+..+.+.|++.+++--.+-. .......+.+++..+.+.+.+++||.+-|||++.++
T Consensus 237 e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~----------- 305 (340)
T d1djqa1 237 EVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEK----------- 305 (340)
T ss_dssp TTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHH-----------
T ss_pred hhhHHHHHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHH-----------
Confidence 34556667777889998776422100 001112355778888888889999999999999865
Q ss_pred HHHHHHcC-cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 380 ASEYFRSG-ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 380 ~~~~l~~G-a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
++++++.| ||-|.+|..++.| |++.+++.+
T Consensus 306 a~~~l~~G~aDlV~~gR~~iad------------Pdl~~k~~~ 336 (340)
T d1djqa1 306 MIEIVTKGYADIIGCARPSIAD------------PFLPQKVEQ 336 (340)
T ss_dssp HHHHHHTTSCSBEEESHHHHHC------------TTHHHHHHT
T ss_pred HHHHHHCCCccchhhHHHHHHC------------ccHHHHHHc
Confidence 99999998 9999999999985 466667653
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=94.24 E-value=0.38 Score=45.53 Aligned_cols=197 Identities=17% Similarity=0.120 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecc-----cCCC-CCCCCchhHHHHHHHhhhccccEEEe--CCccccccCCCCccChHH
Q 045794 307 GKPVELARQYYKEGADEISFLNIT-----GFRD-FPLGDLPMLQVLRLTSENVFVPLTVG--GGIRDFTDANGRHYSSLE 378 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~-----~~~~-~~~~~~~~~~~i~~i~~~~~~pi~~g--GGir~~~d~~~~~~~~~~ 378 (578)
-|+. -|+..++.|++-++.--.. |..| +.......++.+++|++.+.+||.++ .|-.+..+ -.+
T Consensus 24 ~Da~-SAr~~e~aGf~a~~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~~-------v~~ 95 (275)
T d1s2wa_ 24 HNGL-SARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNN-------ARR 95 (275)
T ss_dssp CSHH-HHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHH-------HHH
T ss_pred cCHH-HHHHHHHcCCCEEEhhHHHHHHHcCCCCCCccchhhHHHHHHhhhcccCCceeEecccccccchH-------HHH
Confidence 4554 4677778899988864221 2222 22345678889999999999999986 23333322 136
Q ss_pred HHHHHHHcCcceeec-chhhhccchhhhhcccc---CCc----hHHHHHHHh-CCCCe-EEEEEeccccccCCCCccccc
Q 045794 379 VASEYFRSGADKISI-GSDAVYAAEDYLKTGVK---TGK----SSLEQISRV-YGNQA-VVVSIDPRRVYITHPNDVEFK 448 (578)
Q Consensus 379 ~~~~~l~~Ga~~vv~-gt~~~~~~~~~~~~~~~---~~~----~~l~~~~~~-~g~~~-iv~slD~~~~~~~~~~~~~~~ 448 (578)
.++++.++|+.-|.| ....-++...+ . ++. ... ..++.+.+. -+++. |+.=-|.+..
T Consensus 96 tv~~~~~aGaagi~iEDq~~pk~~~~~-~-~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~~----------- 162 (275)
T d1s2wa_ 96 LVRKLEDRGVAGACLEDKLFPKTNSLH-D-GRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIA----------- 162 (275)
T ss_dssp HHHHHHHTTCCEEEEECBCC----------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTT-----------
T ss_pred HHHHHHHhccceeEeeccccccccccc-c-ccccccccHHHHHHHHHhhhhhccCcceeEEecchhhhh-----------
Confidence 789999999998888 22111100000 0 000 000 122222221 22222 3333332210
Q ss_pred eeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHh--hCCCcEE
Q 045794 449 AVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISD--AVSIPVI 526 (578)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~--~~~ipVI 526 (578)
+ .|. -+.++-++.+.+.|++.+.+.....+ .+.++.+.. ...+|+.
T Consensus 163 ----------~----------~gl-----~eai~R~~aY~eAGAD~vf~~~~~~~-------~~~~~~~~~~~~~~~pl~ 210 (275)
T d1s2wa_ 163 ----------G----------WGL-----DEALKRAEAYRNAGADAILMHSKKAD-------PSDIEAFMKAWNNQGPVV 210 (275)
T ss_dssp ----------T----------CCH-----HHHHHHHHHHHHTTCSEEEECCCSSS-------SHHHHHHHHHHTTCSCEE
T ss_pred ----------c----------CCH-----HHHHHHHHHHHhcCCCeeeeccccCc-------HHHHHHHHHhhcCCCCEE
Confidence 0 011 13577888999999999998776433 134444433 3478998
Q ss_pred EecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 527 ASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 527 asGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+..+-...-.+.+|.+ .|+.-++.|..++.
T Consensus 211 ~~~~~~~~~~~~eL~~-lGv~~v~~g~~~~~ 240 (275)
T d1s2wa_ 211 IVPTKYYKTPTDHFRD-MGVSMVIWANHNLR 240 (275)
T ss_dssp ECCSTTTTSCHHHHHH-HTCCEEEECSHHHH
T ss_pred EecccccccHHHHHHH-cCCCEEEEchHHHH
Confidence 8765443334556664 89888877765554
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=94.24 E-value=0.039 Score=51.04 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCCeEEEEecc-cCCCCCCCCchhHHHHHHHhh---h--ccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 309 PVELARQYYKEGADEISFLNIT-GFRDFPLGDLPMLQVLRLTSE---N--VFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~-~~~~~~~~~~~~~~~i~~i~~---~--~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
|++..+.|.+ -++.+++.-.+ |..+.. -....++-|+++.+ + ..++|+++|||+.. .+..
T Consensus 122 ~~~~l~~~l~-~~d~vlvM~V~pG~~GQ~-f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~~------------~i~~ 187 (221)
T d1tqja_ 122 PLDFLEYVLP-VCDLILIMSVNPGFGGQS-FIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPN------------NTWQ 187 (221)
T ss_dssp CGGGGTTTGG-GCSEEEEESSCC----CC-CCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTT------------TTHH
T ss_pred cHHHHHHHHh-hhcEEEEEEecCCCCCcc-cchhhHHHHHHHHhhhhccccceEEEEECCcCHH------------HHHH
Confidence 3344444433 37888887776 343322 22344455555443 2 35789999999984 4899
Q ss_pred HHHcCcceeecchhhhcc
Q 045794 383 YFRSGADKISIGSDAVYA 400 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~ 400 (578)
+.++||+.+|+||+.+++
T Consensus 188 l~~~Gad~~V~GS~if~~ 205 (221)
T d1tqja_ 188 VLEAGANAIVAGSAVFNA 205 (221)
T ss_dssp HHHHTCCEEEESHHHHTS
T ss_pred HHHcCCCEEEEChHHhCC
Confidence 999999999999998874
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=94.16 E-value=0.1 Score=48.32 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=104.2
Q ss_pred cccEEEeCCcc-ccccCCCCccChHHHHHHHHHcCccee--ecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEE
Q 045794 354 FVPLTVGGGIR-DFTDANGRHYSSLEVASEYFRSGADKI--SIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVV 430 (578)
Q Consensus 354 ~~pi~~gGGir-~~~d~~~~~~~~~~~~~~~l~~Ga~~v--v~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~ 430 (578)
.+|+.+.+|+. +.++ -.+.++++++.|...+ =+|. .. +.+.++.+.+.+|++ +-+
T Consensus 4 ~ipvy~s~g~~~~~~~-------~~~~~~~~~~~Gf~~~Kikvg~---~~-----------Di~~i~~ir~~~g~~-~~l 61 (242)
T d1sjda1 4 SVPCGVSVGIMDTIPQ-------LLDVVGGYLDEGYVRIKLKIEP---GW-----------DVEPVRAVRERFGDD-VLL 61 (242)
T ss_dssp EEEBEEEECCCSCHHH-------HHHHHHHHHHHTCSEEEEECBT---TB-----------SHHHHHHHHHHHCTT-SEE
T ss_pred eeEeeEEeCCCCCHHH-------HHHHHHHHHHcCCCEEEEECCc---hh-----------HHHHHHHHHHHhCCC-eeE
Confidence 47887777774 5554 3466888888998653 3342 11 246788998989865 667
Q ss_pred EEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCC
Q 045794 431 SIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFD 510 (578)
Q Consensus 431 slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d 510 (578)
.+|+... |... +...+++ +++.++..| =+ =..--|
T Consensus 62 ~vDaN~~----------------------------------~~~~---~a~~~~~-l~~~~~~~i--Ee-----P~~~~d 96 (242)
T d1sjda1 62 QVDANTA----------------------------------YTLG---DAPQLAR-LDPFGLLLI--EQ-----PLEEED 96 (242)
T ss_dssp EEECTTC----------------------------------CCGG---GHHHHHT-TGGGCCSEE--EC-----CSCTTC
T ss_pred eeccccc----------------------------------cchh---hhhHHhh-hhhhhhHHH--Hh-----hhhhhh
Confidence 8886432 2211 2455554 677765432 11 122238
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeec
Q 045794 511 MDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 577 (578)
Q Consensus 511 ~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~ 577 (578)
++.++++++.+++||.+.--+.+..++.++.+..-++.+.+--....|-....++.+.+.+.|+++-
T Consensus 97 ~~~~~~l~~~~~~pia~gE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGit~~~~i~~~A~~~~i~~~ 163 (242)
T d1sjda1 97 VLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVW 163 (242)
T ss_dssp HHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhccCcccccccccccchhhhhhhhcCccCEEEeccccCccchhhhHHHHHHHHCCCEEe
Confidence 8999999999999999888999999999999743466665433333344446778888888888763
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=94.13 E-value=0.088 Score=47.80 Aligned_cols=81 Identities=27% Similarity=0.250 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+..+ ++...+.|+|.+.+==+-.....+......++.++++++.+.+||.+=|||+. ++ +.++++.
T Consensus 107 h~~~e-~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~~~Pv~AiGGI~~-~n-----------i~~~~~~ 173 (206)
T d1xi3a_ 107 YSLEE-ALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGINK-DN-----------AREVLKT 173 (206)
T ss_dssp SSHHH-HHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCCT-TT-----------HHHHHTT
T ss_pred CCHHH-HHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhcCCCEEEECCCCH-HH-----------HHHHHHh
Confidence 35544 45556789998876444322111122345688999999999999999999966 34 9999999
Q ss_pred Ccceeecchhhhcc
Q 045794 387 GADKISIGSDAVYA 400 (578)
Q Consensus 387 Ga~~vv~gt~~~~~ 400 (578)
|++.|++.++.+..
T Consensus 174 Ga~gvAvis~I~~~ 187 (206)
T d1xi3a_ 174 GVDGIAVISAVMGA 187 (206)
T ss_dssp TCSEEEESHHHHTS
T ss_pred CCCEEEEhHHHHCC
Confidence 99999999988863
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.92 E-value=0.05 Score=54.35 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCC-----CCchhHHHH---HHHhhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPL-----GDLPMLQVL---RLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~-----~~~~~~~~i---~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+.|+.+.+.|||-| .+.+..-..++. -..+.+..+ .+.++..++||+.+|||++..| +-+
T Consensus 172 e~a~~L~~aGAD~V-kVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gd-----------iak 239 (378)
T d1jr1a1 172 AQAKNLIDAGVDAL-RVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGH-----------IAK 239 (378)
T ss_dssp HHHHHHHHHTCSEE-EECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHH-----------HHH
T ss_pred HHHHHHHHhCCCEE-eeccccccccccccccccCcccchhhhHHHHhhcccCCceecccccccCCc-----------eee
Confidence 66888899999954 566653211110 012334444 4445567899999999999977 889
Q ss_pred HHHcCcceeecchhhhcc
Q 045794 383 YFRSGADKISIGSDAVYA 400 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~ 400 (578)
.|.+|||-|.+||.....
T Consensus 240 Ala~GAd~VMmGs~fAgt 257 (378)
T d1jr1a1 240 ALALGASTVMMGSLLAAT 257 (378)
T ss_dssp HHHTTCSEEEESTTTTTB
T ss_pred EEEeecceeeecceeeee
Confidence 999999999999987763
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.82 E-value=0.54 Score=42.45 Aligned_cols=165 Identities=19% Similarity=0.201 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHH-HHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVAS-EYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~-~~l~~ 386 (578)
.-..+|.+|.+.|-+ +.++.+|-.+ ..-.+-++..++..++|+.....-.+.+++ ...+. .....
T Consensus 26 TiaKLA~~~~~~g~k-V~lit~Dt~R------~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~-------~~~~~~~~~~~ 91 (207)
T d1ls1a2 26 TAAKLALYYKGKGRR-PLLVAADTQR------PAAREQLRLLGEKVGVPVLEVMDGESPESI-------RRRVEEKARLE 91 (207)
T ss_dssp HHHHHHHHHHHTTCC-EEEEECCSSC------HHHHHHHHHHHHHHTCCEEECCTTCCHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCc-EEEEeccccc------chHHHHHHHHHHhcCCccccccccchhhHH-------HHHHHHHHhhc
Confidence 455788888888864 8899998753 233566777788889999865444443210 00011 11235
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
+.|.|+|.|+-........ .+.+.++.+...++.+.+.+|...+
T Consensus 92 ~~d~vlIDTaGr~~~d~~~-------~~el~~~~~~~~~~~~llv~~a~~~----------------------------- 135 (207)
T d1ls1a2 92 ARDLILVDTAGRLQIDEPL-------MGELARLKEVLGPDEVLLVLDAMTG----------------------------- 135 (207)
T ss_dssp TCCEEEEECCCCSSCCHHH-------HHHHHHHHHHHCCSEEEEEEEGGGT-----------------------------
T ss_pred cCcceeecccccchhhhhh-------HHHHHHHHhhcCCceEEEEeccccc-----------------------------
Confidence 7899999887765321100 1333444444566777777775432
Q ss_pred EEEcccccCCCCCHHHHHHHHH-HcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVE-DLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFS 538 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~-~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~ 538 (578)
.+..+.++.+. ..+++.+|+|-++.+... |. +-.+...+++||.+.|+=..+||+.
T Consensus 136 -----------~~~~~~~~~f~~~~~~~~~I~TKlDe~~~~-G~----~l~~~~~~~~Pi~~i~~Gq~pedl~ 192 (207)
T d1ls1a2 136 -----------QEALSVARAFDEKVGVTGLVLTKLDGDARG-GA----ALSARHVTGKPIYFAGVSEKPEGLE 192 (207)
T ss_dssp -----------HHHHHHHHHHHHHTCCCEEEEECGGGCSSC-HH----HHHHHHHHCCCEEEEC------CCE
T ss_pred -----------hhHHHHHHHHHhhCCCCeeEEeecCccccc-hH----HHHHHHHHCCCEEEEeCCCChhhcc
Confidence 13456666664 589999999999866443 22 2233445678985544434677664
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=93.61 E-value=0.05 Score=52.39 Aligned_cols=91 Identities=23% Similarity=0.281 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCC---CHHHHHHHHhhCCCc-EEEecCCCCHHHHHHHHH---hcCchHHhhh
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGF---DMDLIKLISDAVSIP-VIASSGAGAVEHFSDVFR---KTNASAALAA 552 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~---d~~li~~l~~~~~ip-VIasGGi~s~eDi~~l~~---~~G~~gv~vg 552 (578)
+...++++.++|++-+-+- ..- ...+. +....+++.+.+.+| |+.|||+ +.+++.+.++ ..||.|+++|
T Consensus 177 i~~a~r~~~e~GaDi~K~~-~p~--~~~~~~~~~~~~~~~~~~~~~~p~vvLs~G~-~~~~f~~~l~~A~~aGa~G~~~G 252 (291)
T d1to3a_ 177 IIDAAKELGDSGADLYKVE-MPL--YGKGARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAG 252 (291)
T ss_dssp HHHHHHHHTTSSCSEEEEC-CGG--GGCSCHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHhcCCcEEEEe-cCC--CchhhhHHHHHHHHHHhhcCCCcEEEEeCCC-CHHHHHHHHHHHHHCCCeEEEeC
Confidence 5677888899999855433 221 12223 334566677777899 6777886 5566655432 2799999999
Q ss_pred hhhccCCCCHHHHHHHHHhCCC
Q 045794 553 GIFHRKEVPIQSVKEHLYKEGI 574 (578)
Q Consensus 553 sa~~~~~~~~~~~~~~l~~~~i 574 (578)
+.+....+.....++++.+.++
T Consensus 253 R~iw~~~~~~~~~~~~l~~~~~ 274 (291)
T d1to3a_ 253 RAVWSSVIGLPDTELMLRDVSA 274 (291)
T ss_dssp HHHHGGGTTCSCHHHHHHHTHH
T ss_pred hhhhhCcccCccHHHHHHHHHH
Confidence 9998765544444555655543
|
| >d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: HSP31 (HchA; YedU) species: Escherichia coli [TaxId: 562]
Probab=93.57 E-value=0.019 Score=55.11 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=37.6
Q ss_pred CCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEEechHHHHhhh
Q 045794 84 LNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGICLGLQLLFQS 136 (578)
Q Consensus 84 ~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGIClG~QlLa~a 136 (578)
.+||+|++|||.....++ .....+.+.++++.++++||-+||-|=..|..+
T Consensus 140 ~dYdav~iPGGhG~~~dL--~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a 190 (279)
T d1n57a_ 140 SEYAAIFVPGGHGALIGL--PESQDVAAALQWAIKNDRFVISLCHGPAAFLAL 190 (279)
T ss_dssp CSEEEEEECCSGGGGSSG--GGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGG
T ss_pred ccccEEEecCCccchhhh--hHHHHHHHHHHHHHHcCCcceeccccchhhhhc
Confidence 479999999984211111 122246788999999999999999999888764
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.57 E-value=0.13 Score=47.90 Aligned_cols=151 Identities=18% Similarity=0.138 Sum_probs=95.7
Q ss_pred HHHHHHHHHcCcceee--cchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADKIS--IGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~vv--~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++.+.|...+= +|.......+++ ..+.+.++.+.+.+|++ +-+.+|+...
T Consensus 28 ~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~-----~~d~~~v~avR~~~G~~-~~l~vDaN~~----------------- 84 (255)
T d1rvka1 28 GRFAETLVKRGYKGIKLHTWMPPVSWAPDV-----KMDLKACAAVREAVGPD-IRLMIDAFHW----------------- 84 (255)
T ss_dssp HHHHHHHHHHTCSEEEEECCCTTSTTCCCH-----HHHHHHHHHHHHHHCTT-SEEEEECCTT-----------------
T ss_pred HHHHHHHHHcCCCEEEEcCCCCccccccCH-----HHHHHHHHHHHHHcCCc-cceecccccc-----------------
Confidence 4677888888866433 342211000000 01247788898999875 6678886432
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
|.. -+..++++.++++++..+ +.=...-|++.++++++.+++||.+...+.+.
T Consensus 85 -----------------~~~---~~A~~~~~~l~~~~l~~i-------EeP~~~~d~~~~~~l~~~~~~pI~~~E~~~~~ 137 (255)
T d1rvka1 85 -----------------YSR---TDALALGRGLEKLGFDWI-------EEPMDEQSLSSYKWLSDNLDIPVVGPESAAGK 137 (255)
T ss_dssp -----------------CCH---HHHHHHHHHHHTTTCSEE-------ECCSCTTCHHHHHHHHHHCSSCEEECSSCSSH
T ss_pred -----------------ccc---chhhhhhhhcccchhhhh-------cCCcccccHHHHHHHHHhcccceeehhhcccc
Confidence 221 136788999999887532 11122237899999999999999888888876
Q ss_pred -HHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCeec
Q 045794 535 -EHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 577 (578)
Q Consensus 535 -eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v~ 577 (578)
+++..+++...++.+.+--....|-....++.+.+...|++|.
T Consensus 138 ~~~~~~~i~~~~~dii~~d~~~~GGit~~~~i~~~a~~~gi~v~ 181 (255)
T d1rvka1 138 HWHRAEWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGMECE 181 (255)
T ss_dssp HHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEE
T ss_pred hhhhhhhhhhchhhhccccccccccchHHHHHHHHHHHhcccee
Confidence 4677787644555544333333444457778888888888763
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=93.47 E-value=0.081 Score=48.84 Aligned_cols=70 Identities=30% Similarity=0.445 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 310 VELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
...++...+.|+|.|= --.|.. ..+..++.++.+.+.+ .+.|-+.||||+++| +.+++++|
T Consensus 135 ~~a~~~a~~aGadfiK--TSTG~~----~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~-----------a~~~i~~G 197 (225)
T d1mzha_ 135 KKAVEICIEAGADFIK--TSTGFA----PRGTTLEEVRLIKSSAKGRIKVKASGGIRDLET-----------AISMIEAG 197 (225)
T ss_dssp HHHHHHHHHHTCSEEE--CCCSCS----SSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHH-----------HHHHHHTT
T ss_pred HHHHHHHHHcccceEe--ecCCCC----CCCCCHHHHHHHHHHhCCCceEECcCCCCCHHH-----------HHHHHHhc
Confidence 4566666778999543 112321 1233344444444443 478899999999876 99999999
Q ss_pred cceeecchhhh
Q 045794 388 ADKISIGSDAV 398 (578)
Q Consensus 388 a~~vv~gt~~~ 398 (578)
++| |||...
T Consensus 198 a~R--iGtSs~ 206 (225)
T d1mzha_ 198 ADR--IGTSSG 206 (225)
T ss_dssp CSE--EEESCH
T ss_pred hhh--eecCcH
Confidence 998 566444
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=93.39 E-value=0.18 Score=47.06 Aligned_cols=166 Identities=8% Similarity=0.067 Sum_probs=99.9
Q ss_pred cccEEEeCCccccccCCCCccChHHHHHHHHHcCcc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEE
Q 045794 354 FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVS 431 (578)
Q Consensus 354 ~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~s 431 (578)
.+|+...+|..+... ..+--..+.++++++.|.. |+=+|...++.+ .+.++.+.+.+|++ +-+.
T Consensus 5 ~ip~Yas~~~~~~~~--~~~~~~~~~~~~~~~~Gf~~~Kikvg~~~~~~d-----------i~~v~avr~~~G~~-~~l~ 70 (256)
T d2gdqa1 5 EIPVYASFQSYSDSP--QWISRSVSNVEAQLKKGFEQIKVKIGGTSFKED-----------VRHINALQHTAGSS-ITMI 70 (256)
T ss_dssp EEEEEEECCCBCSST--THHHHHHHHHHHHHTTTCCEEEEECSSSCHHHH-----------HHHHHHHHHHHCTT-SEEE
T ss_pred eEEeCeecCcCCCCH--HHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH-----------HHHHHHHHHHcCCC-eEEe
Confidence 467776655443211 0001123467777888865 444454333321 36788888889865 6678
Q ss_pred EeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCH
Q 045794 432 IDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDM 511 (578)
Q Consensus 432 lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~ 511 (578)
+|+... |.- -+..++++.+++. ..|.+.. .-..--|+
T Consensus 71 vDan~~----------------------------------~~~---~~A~~~~~~l~~~--~~i~~~E----eP~~~~d~ 107 (256)
T d2gdqa1 71 LDANQS----------------------------------YDA---AAAFKWERYFSEW--TNIGWLE----EPLPFDQP 107 (256)
T ss_dssp EECTTC----------------------------------CCH---HHHHTTHHHHTTC--SCEEEEE----CCSCSSCH
T ss_pred eccccC----------------------------------CCH---HHHHHHHHHHhhc--CceeEec----cccccchH
Confidence 886432 211 1235566666553 2232222 11122389
Q ss_pred HHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 512 DLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 512 ~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+.++++++.+++||.+.=.+.+.+++.++++...++.+.+--....|-....++.+.+.+.|++|
T Consensus 108 ~~~~~l~~~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~i~~~a~~~~i~v 172 (256)
T d2gdqa1 108 QDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFGVRA 172 (256)
T ss_dssp HHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHhhcccceeecCccccchhhHHHHHHhhcceeeeccccccccHHHHHHHHHHHhhhcccc
Confidence 99999999999998888889999999999974445555433333334444677777888888876
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=93.29 E-value=0.086 Score=51.59 Aligned_cols=77 Identities=25% Similarity=0.308 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCC------CCCCchhHHH---HHHHhhhccccEEEeCCccccccCCCCccChHHHHH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDF------PLGDLPMLQV---LRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~------~~~~~~~~~~---i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
+.|+.+.+.|||-+-+ -+..-.-+ ..+ .+.+.. +.+.++..++||+.+|||++..| +-
T Consensus 151 ~~a~~l~~~GaD~v~V-Gig~Gs~ctt~~~~G~g-~p~~sai~~~~~~~~~~~vpvIAdGGi~~~gd-----------ia 217 (330)
T d1vrda1 151 EGTEALIKAGADAVKV-GVGPGSICTTRVVAGVG-VPQLTAVMECSEVARKYDVPIIADGGIRYSGD-----------IV 217 (330)
T ss_dssp HHHHHHHHTTCSEEEE-CSSCSTTCHHHHHHCCC-CCHHHHHHHHHHHHHTTTCCEEEESCCCSHHH-----------HH
T ss_pred HHHHHHHHcCCCEEee-ccccCccccccceeccc-cccchhHHHHHHHHHhcCceEEecCCcccCCc-----------hh
Confidence 6788899999997664 44320000 011 223334 44455667899999999999977 88
Q ss_pred HHHHcCcceeecchhhhcc
Q 045794 382 EYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~ 400 (578)
+.|.+|||-|.+||.....
T Consensus 218 kAla~GAd~Vm~Gs~fa~~ 236 (330)
T d1vrda1 218 KALAAGAESVMVGSIFAGT 236 (330)
T ss_dssp HHHHTTCSEEEESHHHHTB
T ss_pred eeeeccCceeeecchheee
Confidence 9999999999999977763
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.23 E-value=0.11 Score=52.49 Aligned_cols=87 Identities=20% Similarity=0.125 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCC----------CC---CchhHHHHHHHhhhcc--ccEEEeCCccccccCCCC
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFP----------LG---DLPMLQVLRLTSENVF--VPLTVGGGIRDFTDANGR 372 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~----------~~---~~~~~~~i~~i~~~~~--~pi~~gGGir~~~d~~~~ 372 (578)
+-.++++...+.|++.+.+.+-....... .+ ....++.++++.+.++ +||.--|||.|.+|
T Consensus 281 ~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~D---- 356 (409)
T d1tv5a1 281 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLD---- 356 (409)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHH----
T ss_pred hhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceEEEECCCCCHHH----
Confidence 46788999999999999887643211100 00 1135777888888774 99988899999977
Q ss_pred ccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 373 HYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 373 ~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
+.+.+.+||+-|=|+|..+.+-|.++
T Consensus 357 -------a~e~i~AGAs~VQv~T~li~~Gp~~v 382 (409)
T d1tv5a1 357 -------ALEKIEAGASVCQLYSCLVFNGMKSA 382 (409)
T ss_dssp -------HHHHHHTTEEEEEESHHHHHHGGGHH
T ss_pred -------HHHHHHcCCCHHhhhhHHHhcChHHH
Confidence 99999999999999999887544444
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=93.10 E-value=0.074 Score=51.72 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=50.7
Q ss_pred HHHHHHHHcCCCeEEEEecccCCC-CC-------------CCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccC
Q 045794 311 ELARQYYKEGADEISFLNITGFRD-FP-------------LGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYS 375 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~-~~-------------~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~ 375 (578)
+.++.+.+.|+|.|.+-.--+... .. ..-.+....+.++.... ++||+++||||+-.|
T Consensus 173 ~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~v~viadGGIr~g~D------- 245 (329)
T d1p0ka_ 173 ASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALD------- 245 (329)
T ss_dssp HHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHH-------
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcCCceEEEcCCcccHHH-------
Confidence 556667789999887654322100 00 00012334444444433 699999999999987
Q ss_pred hHHHHHHHHHcCcceeecchhhhc
Q 045794 376 SLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 376 ~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
+-+.+.+|||.|.+|+..+.
T Consensus 246 ----v~KAlalGAdaV~iGr~~l~ 265 (329)
T d1p0ka_ 246 ----VAKAIALGASCTGMAGHFLK 265 (329)
T ss_dssp ----HHHHHHTTCSEEEECHHHHH
T ss_pred ----HHHHHHcCCCchhccHHHHH
Confidence 88899999999999997665
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=93.09 E-value=0.13 Score=50.86 Aligned_cols=87 Identities=11% Similarity=0.108 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+.+++++.+.+.|++.+|+-.-+-... ..-+..+-+.+.+.+.+|+..+| +.+.+ .++++++.
T Consensus 250 ~e~~~~~~~l~~~gvd~i~vs~~~~~~~----~~~~~~~~~~~~~~~~~~vi~~G-~~t~~-----------~ae~~l~~ 313 (363)
T d1vyra_ 250 ADALYLIEELAKRGIAYLHMSETDLAGG----KPYSEAFRQKVRERFHGVIIGAG-AYTAE-----------KAEDLIGK 313 (363)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCBTTBC----CCCCHHHHHHHHHHCCSEEEEES-SCCHH-----------HHHHHHHT
T ss_pred HHHHHHHHHHHhcCCeeeecccCCccCC----ccccHHHHHHHHHhcCceEEecC-CCCHH-----------HHHHHHHC
Confidence 3677889999999999999875443211 12335566667777788886555 55765 49999999
Q ss_pred C-cceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 387 G-ADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 387 G-a~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
| ||-|.+|..++.| |++.+++.+
T Consensus 314 G~~DlV~~gR~liad------------P~~~~K~~~ 337 (363)
T d1vyra_ 314 GLIDAVAFGRDYIAN------------PDLVARLQK 337 (363)
T ss_dssp TSCSEEEESHHHHHC------------TTHHHHHHH
T ss_pred CCcceehhhHHHHHC------------ccHHHHHHh
Confidence 9 8999999999985 466677765
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=93.06 E-value=0.2 Score=46.92 Aligned_cols=94 Identities=19% Similarity=0.120 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhc
Q 045794 477 PIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFH 556 (578)
Q Consensus 477 ~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~ 556 (578)
++++.+.++.+++.|+..|-+.. |..+-|=+++.++.+++.+++||..--=|-++-.+.+... .|||+|++-.++.
T Consensus 64 ~~dp~~~A~~y~~~GA~aiSVLT---e~~~F~Gs~~dl~~v~~~~~iPvLrKDFIid~~QI~ea~~-~GADaVLLIaall 139 (254)
T d1vc4a_ 64 EVDPVEAALAYARGGARAVSVLT---EPHRFGGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARA-FGASAALLIVALL 139 (254)
T ss_dssp SCCHHHHHHHHHHTTCSEEEEEC---CCSSSCCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHH-TTCSEEEEEHHHH
T ss_pred cCCHHHHHHHHHhcCCceEEEEc---CcccccccHHHHHHHHHHcCCCcccCCccccHHHHHHHHh-ccchHHHHHHHHH
Confidence 57899999999999999887554 5566667888999999999999999999999999999975 9999997666665
Q ss_pred cCCCCHHHHHHHHHhCCCee
Q 045794 557 RKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 557 ~~~~~~~~~~~~l~~~~i~v 576 (578)
.. ...++.+...+-|+++
T Consensus 140 ~~--~l~~l~~~A~~lgl~~ 157 (254)
T d1vc4a_ 140 GE--LTGAYLEEARRLGLEA 157 (254)
T ss_dssp GG--GHHHHHHHHHHHTCEE
T ss_pred HH--HHHHHHHHHHHhCCce
Confidence 43 3566666666666654
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=92.81 E-value=0.82 Score=40.96 Aligned_cols=184 Identities=15% Similarity=0.056 Sum_probs=109.0
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHH-cCcc
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFR-SGAD 389 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~-~Ga~ 389 (578)
+-|+...++|+|.+=++=.... .|-...+.+++|.+...-.+ .. |-++..++.+.+.+.++ .+.+
T Consensus 13 ~da~~~~~~gad~iGfI~~~~S-----pR~Vs~~~a~~i~~~~~~~~------~~---V~V~v~~~~~~i~~~~~~~~~~ 78 (205)
T d1nsja_ 13 EDALFSVESGADAVGFVFYPKS-----KRYISPEDARRISVELPPFV------FR---VGVFVNEEPEKILDVASYVQLN 78 (205)
T ss_dssp HHHHHHHHHTCSEEEEECCTTC-----TTBCCHHHHHHHHHHSCSSS------EE---EEEESSCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHhCCCCEEeEeccCCC-----CCccCHHHHHHHHhhhcccc------ee---eccccccHHHHHHhhhhhcccc
Confidence 5567777889999887643221 24556777888877553211 11 12234455666666654 4666
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEE
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTV 469 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (578)
.|=+-. -+ +++.++++...+ .++.++-..
T Consensus 79 ~vQlhg--~e------------~~~~~~~~~~~~---~~~~~~~~~---------------------------------- 107 (205)
T d1nsja_ 79 AVQLHG--EE------------PIELCRKIAERI---LVIKAVGVS---------------------------------- 107 (205)
T ss_dssp EEEECS--CC------------CHHHHHHHHTTS---EEEEEEEES----------------------------------
T ss_pred chhccc--hh------------hHHHHhhcccce---eeeeecccc----------------------------------
Confidence 665521 11 135566665544 233332211
Q ss_pred cccccCCCCCHHHHHHHHHHcCCcEEEEeccCC--CCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCch
Q 045794 470 NGGREGRPIGAYELAKAVEDLGAGEILLNCIDC--DGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNAS 547 (578)
Q Consensus 470 ~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~--dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~ 547 (578)
+..+. ..+.+.....+++...+. .|+..-+||++++.+... ..|++.+||+ +++.+.++++..+++
T Consensus 108 ---------~~~~~-~~~~~~~~~~~l~d~~~~~~GGtG~~~dw~~~~~~~~~-~~~~~LAGGl-~~~Nv~~ai~~~~p~ 175 (205)
T d1nsja_ 108 ---------NERDM-ERALNYREFPILLDTKTPEYGGSGKTFDWSLILPYRDR-FRYLVLSGGL-NPENVRSAIDVVRPF 175 (205)
T ss_dssp ---------SHHHH-HHHGGGTTSCEEEEESCSSSSSCCSCCCGGGTGGGGGG-SSCEEEESSC-CTTTHHHHHHHHCCS
T ss_pred ---------chHHH-HHHhhcccceeeeccccccCCCCCcccchhhcccchhc-ccceeeecCC-CHHHHHHHHHHhCCC
Confidence 11222 223333334444433322 356666899998887654 3489999999 679999888768888
Q ss_pred HHhhhhhhc--cCCCCHHHHHHHHHh
Q 045794 548 AALAAGIFH--RKEVPIQSVKEHLYK 571 (578)
Q Consensus 548 gv~vgsa~~--~~~~~~~~~~~~l~~ 571 (578)
||=+.|.+- .|.-++..+++++.+
T Consensus 176 gvDvsSgvE~~~G~KD~~ki~~f~~~ 201 (205)
T d1nsja_ 176 AVDVSSGVEAFPGKKDHDSIKMFIKN 201 (205)
T ss_dssp EEEESGGGEEETTEECHHHHHHHHHH
T ss_pred EEEEcCcccCCCCccCHHHHHHHHHH
Confidence 887888884 356678888887764
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=92.63 E-value=0.081 Score=50.73 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCCeEEEEecccCC--------C-C-------CCCCchhHHHHHHHhhh-ccccEEEeCCccccccCCCC
Q 045794 310 VELARQYYKEGADEISFLNITGFR--------D-F-------PLGDLPMLQVLRLTSEN-VFVPLTVGGGIRDFTDANGR 372 (578)
Q Consensus 310 ~~~a~~~~~~g~~~i~~~Dl~~~~--------~-~-------~~~~~~~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~ 372 (578)
.+.++.+.+.|++.|.+-+-.+.. + + .....+.+..+.++.+. -++||++.||||+-.|
T Consensus 173 ~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~~i~Ii~dGGIr~g~D---- 248 (310)
T d1vcfa1 173 REAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTD---- 248 (310)
T ss_dssp HHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHH----
T ss_pred HHHHHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcCCCeEEeCCCCCchHH----
Confidence 477888889999987654332210 0 0 00001234445555443 3699999999999987
Q ss_pred ccChHHHHHHHHHcCcceeecchhhhc
Q 045794 373 HYSSLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 373 ~~~~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
+-+.+.+||+-|.+|+..+.
T Consensus 249 -------v~KALalGAdaV~iGr~~l~ 268 (310)
T d1vcfa1 249 -------GAKALALGADLLAVARPLLR 268 (310)
T ss_dssp -------HHHHHHHTCSEEEECGGGHH
T ss_pred -------HHHHHHhCCCEeeEhHHHHH
Confidence 88889999999999998775
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=92.58 E-value=0.17 Score=44.34 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
.+-++++.+.|++.|.+=..+ .+.+++..+.. .+.+-+|||| +++.+.+..+ +|+|.+++|+..|.
T Consensus 89 ~~~~~~a~~~g~diImLDN~~---------pe~~~~av~~i~~~~~lEaSGgI-~~~ni~~ya~-~GVD~IS~galt~~ 156 (167)
T d1qapa1 89 LDELDDALKAGADIIMLDNFN---------TDQMREAVKRVNGQARLEVSGNV-TAETLREFAE-TGVDFISVGALTKH 156 (167)
T ss_dssp HHHHHHHHHTTCSEEEESSCC---------HHHHHHHHHTTCTTCCEEECCCS-CHHHHHHHHH-TTCSEEECSHHHHE
T ss_pred HHHHHHHHhcCCcEEEecCCC---------HHHHHHHHHhcCCceEEEEeCCC-CHHHHHHHHH-cCCCEEECCcccCC
Confidence 455677778999977765443 45555555544 5788899999 7899999985 99999999998775
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.40 E-value=0.18 Score=46.73 Aligned_cols=71 Identities=27% Similarity=0.299 Sum_probs=43.8
Q ss_pred HHHHHHHHcCCCeEEEEecc-cCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcc
Q 045794 311 ELARQYYKEGADEISFLNIT-GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGAD 389 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~-~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~ 389 (578)
.+++...+.|++.| -=+ |... ......+...+.+......+.|-+.||||+.+| +.+++++||+
T Consensus 152 ~a~~~a~~aGadFV---KTSTG~~~-~gat~~~~~~l~~~~~~~~vgIKasGGIrt~~~-----------a~~~i~aGa~ 216 (234)
T d1n7ka_ 152 LLVDSSRRAGADIV---KTSTGVYT-KGGDPVTVFRLASLAKPLGMGVKASGGIRSGID-----------AVLAVGAGAD 216 (234)
T ss_dssp HHHHHHHHTTCSEE---ESCCSSSC-CCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHH-----------HHHHHHTTCS
T ss_pred HHHHHHHHhhhhhe---eecccccC-CCCCHHHHHHHHHHhcCCCCcEEeeCCcCCHHH-----------HHHHHHccCc
Confidence 44555567899843 222 3211 111223343444444444678899999999876 9999999999
Q ss_pred eeecchhhh
Q 045794 390 KISIGSDAV 398 (578)
Q Consensus 390 ~vv~gt~~~ 398 (578)
| |||..-
T Consensus 217 r--IGtSs~ 223 (234)
T d1n7ka_ 217 I--IGTSSA 223 (234)
T ss_dssp E--EEETTH
T ss_pred e--eecchH
Confidence 7 576543
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=92.40 E-value=0.14 Score=47.18 Aligned_cols=154 Identities=10% Similarity=0.072 Sum_probs=99.2
Q ss_pred ccEEEeCCcc-ccccCCCCccChHHHHHHHHHcCcc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEE
Q 045794 355 VPLTVGGGIR-DFTDANGRHYSSLEVASEYFRSGAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVS 431 (578)
Q Consensus 355 ~pi~~gGGir-~~~d~~~~~~~~~~~~~~~l~~Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~s 431 (578)
+|+.+..|+. +.++ .++.++.+.+.|.. |+=+|. -. ..+.++.+.+.++ + +.+.
T Consensus 5 ipv~~s~g~~~~~~~-------~~~~~~~~~~~G~~~~Kikvg~--~~------------D~~~v~~ir~~~~-d-~~l~ 61 (241)
T d1wuea1 5 IPVGISLGIQEDLPQ-------LLKQVQLAVEKGYQRVKLKIRP--GY------------DVEPVALIRQHFP-N-LPLM 61 (241)
T ss_dssp EECCEEECCCSCHHH-------HHHHHHHHHHTTCSCEEEECBT--TB------------SHHHHHHHHHHCT-T-SCEE
T ss_pred EEEEEEeCCCCCHHH-------HHHHHHHHHHCCCCEEEEEcCc--cH------------HHHHHHHHHHhcc-c-ccee
Confidence 5776666765 3322 35678888889987 444453 11 2367888888886 3 5566
Q ss_pred EeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCH
Q 045794 432 IDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDM 511 (578)
Q Consensus 432 lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~ 511 (578)
+|+... |... +...+ .++.+.++..+ +.=..--|+
T Consensus 62 vDaN~~----------------------------------~~~~---~a~~~-~~~~~~~i~~i-------EeP~~~~~~ 96 (241)
T d1wuea1 62 VDANSA----------------------------------YTLA---DLPQL-QRLDHYQLAMI-------EQPFAADDF 96 (241)
T ss_dssp EECTTC----------------------------------CCGG---GHHHH-HGGGGSCCSCE-------ECCSCTTCS
T ss_pred eccccc----------------------------------CCHH---Hhhhh-hhhhhhhhhhh-------cCcccccch
Confidence 786432 2211 23333 33444443211 111122368
Q ss_pred HHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 512 DLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 512 ~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+.++++++.+++||.+.-.+.+..++..+.+...++.+.+--....|-....++.+.+++.|++|
T Consensus 97 ~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~~~d~i~~d~~~~GGit~~~~i~~~a~~~~i~v 161 (241)
T d1wuea1 97 LDHAQLQRELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLV 161 (241)
T ss_dssp HHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEE
T ss_pred hhhhhhhcccccccccCcccccchhhhhhhhhhhhhhhccccccccCcHHHHHHHHHHHHcCCEE
Confidence 89999999999999999999999999999975456766544444455555778888999999876
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.01 E-value=0.24 Score=44.88 Aligned_cols=166 Identities=13% Similarity=0.138 Sum_probs=94.9
Q ss_pred HHHHHHHhhhccccEEEeCCccccccCCCCccCh-HHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 343 LQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSS-LEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 343 ~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~-~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
.+.|+++.+..+.||.++-=..+.. .| ...++.++++|+|.+.+-..+=.+ .+ +.+.+.++
T Consensus 43 ~~~v~~l~~~~~~~i~~D~K~~DIg-------~t~~~~~~~~~~~gad~~TVh~~~g~~---~i--------~~~~~~a~ 104 (212)
T d1km4a_ 43 MDIIAEFRKRFGCRIIADFAVADIP-------ETNEKICRATFKAGADAIIVHGFPGAD---SV--------RACLNVAE 104 (212)
T ss_dssp THHHHHHHHHHCCEEEEEEEECSCH-------HHHHHHHHHHHHTTCSEEEEESTTCHH---HH--------HHHHHHHH
T ss_pred HHHHHHHHHhcccceehhhhhhccc-------cHHHHhHhhhccccccEEEEeccCChH---HH--------HHHHHHHH
Confidence 3678888887788887763333321 11 134677889999999885433221 11 22345556
Q ss_pred hCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccC
Q 045794 422 VYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCID 501 (578)
Q Consensus 422 ~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~ 501 (578)
.++. .+++-...-. .++.....-...+.++...+.|++.++.-.
T Consensus 105 ~~~~-~~~~l~~~s~---------------------------------~~~~~~~~~~~~~~~~~~~~~g~~g~v~~~-- 148 (212)
T d1km4a_ 105 EMGR-EVFLLTEMSH---------------------------------PGAEMFIQGAADEIARMGVDLGVKNYVGPS-- 148 (212)
T ss_dssp HHTC-EEEEECSCSS---------------------------------GGGGTTHHHHHHHHHHHHHHHTCCEEECCT--
T ss_pred hcCC-ccccchhhcc---------------------------------hhhhhhhhhHHHHHHHHHHHhCCccccccc--
Confidence 6763 3333111110 011110011133455555677777665211
Q ss_pred CCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHH-HHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 502 CDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVE-HFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 502 ~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~e-Di~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
-..+.++.+++.+ .-.++..+||+... +..+.. .+++.++||++++.-..+.+.+++++++
T Consensus 149 -------~~~~~i~~ir~~~~~~~~~vtpGI~~~g~~~~d~~--~~ad~iIvGR~I~~a~dP~~aa~~i~~~ 211 (212)
T d1km4a_ 149 -------TRPERLSRLREIIGQDSFLISPGVGAQGGDPGETL--RFADAIIVGRSIYLADNPAAAAAGIIES 211 (212)
T ss_dssp -------TCHHHHHHHHHHHCSSSEEEECCBSTTSBCHHHHT--TTCSEEEECHHHHTSSSHHHHHHHHHHH
T ss_pred -------cCHHHHhhhhhccCCceeEEcCccccCCCCHHHHH--hhCCEEEECchhccCCCHHHHHHHHHHh
Confidence 2345667776665 45678899997543 333332 4789999999999888878777777653
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=91.54 E-value=0.19 Score=46.21 Aligned_cols=82 Identities=18% Similarity=0.130 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCch----hHHHHHHHhhh-ccccEEEeCCccccccCCCCccChHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLP----MLQVLRLTSEN-VFVPLTVGGGIRDFTDANGRHYSSLEVAS 381 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~----~~~~i~~i~~~-~~~pi~~gGGir~~~d~~~~~~~~~~~~~ 381 (578)
++|.+. +...+.+.+.|-+--.-++-.+...... ....++.+.+. -++||.+||||++-+| +.
T Consensus 122 ge~~~~-~~~~~~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~-----------~~ 189 (226)
T d1w0ma_ 122 PDPRTS-LAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDD-----------VA 189 (226)
T ss_dssp SSHHHH-HHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHH-----------HH
T ss_pred CchHHh-hhhhccccceeeecchhhccCCCCCChhhhhHhhhhhhhhhccCCCceEEEecCcCChHH-----------HH
Confidence 344433 4445677776666555554221110011 11233444333 2689999999999866 88
Q ss_pred HHHHcCcceeecchhhhcc
Q 045794 382 EYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 382 ~~l~~Ga~~vv~gt~~~~~ 400 (578)
.+...|+|-+.+||+.++.
T Consensus 190 ~~~~~g~dGvLVGsA~l~a 208 (226)
T d1w0ma_ 190 AALRLGTRGVLLASAAVKA 208 (226)
T ss_dssp HHHHTTCSEEEECHHHHTC
T ss_pred HHhcCCCCEEEechheecC
Confidence 8999999999999999974
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.36 E-value=1.9 Score=38.73 Aligned_cols=160 Identities=18% Similarity=0.249 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH---
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF--- 384 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l--- 384 (578)
.-..+|.+|...|. .+-++-.|..+ ..-.+-++..++..++|+. .+.+.+|. .+.+++..
T Consensus 25 TiAKLA~~~~~~g~-kV~lit~Dt~R------~gA~eQL~~~a~~l~v~~~---~~~~~~d~-------~~~l~~~~~~a 87 (211)
T d2qy9a2 25 TIGKLARQFEQQGK-SVMLAAGDTFR------AAAVEQLQVWGQRNNIPVI---AQHTGADS-------ASVIFDAIQAA 87 (211)
T ss_dssp HHHHHHHHHHTTTC-CEEEECCCTTC------HHHHHHHHHHHHHTTCCEE---CCSTTCCH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-cEEEEeccccc------ccchhhhhhhhhhcCCccc---ccccCCCH-------HHHHHHHHHHH
Confidence 45578888887775 59999888753 2235666777788899997 44454440 12233332
Q ss_pred -HcCcceeecchhhhccchhhhhccccCCchHHHHHH---HhC------CCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 385 -RSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVY------GNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 385 -~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~------g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
..+.|.|+|.|+-..... .++++|+. +.. .+..+++.+|.-.+
T Consensus 88 ~~~~~d~ilIDTaGr~~~d----------~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~----------------- 140 (211)
T d2qy9a2 88 KARNIDVLIADTAGRLQNK----------SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG----------------- 140 (211)
T ss_dssp HHTTCSEEEECCCCCGGGH----------HHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT-----------------
T ss_pred HHcCCCEEEeccCCCcccc----------HHHHHHHHHHHHHHhhhcccCcceeeeehhcccC-----------------
Confidence 247899999997754221 23344443 221 13467777775432
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
.-...+....++..+++.+|+|-+|....+ |.=+ .+...+++||.+-|.=...
T Consensus 141 ----------------------~~~~~~~~~~~~~~~~~~lIlTKlDe~~~~-G~~l----~~~~~~~~Pi~~i~~Gq~v 193 (211)
T d2qy9a2 141 ----------------------QNAVSQAKLFHEAVGLTGITLTKLDGTAKG-GVIF----SVADQFGIPIRYIGVGERI 193 (211)
T ss_dssp ----------------------HHHHHHHHHHHHHSCCCEEEEECCTTCTTT-THHH----HHHHHHCCCEEEEECSSSG
T ss_pred ----------------------cchHHHHhhhhhccCCceEEEeecCCCCCc-cHHH----HHHHHHCCCEEEEeCCCCc
Confidence 113567888889999999999999876544 3222 2334457898655543445
Q ss_pred HHHH
Q 045794 535 EHFS 538 (578)
Q Consensus 535 eDi~ 538 (578)
+|+.
T Consensus 194 ~Dl~ 197 (211)
T d2qy9a2 194 EDLR 197 (211)
T ss_dssp GGEE
T ss_pred ccCc
Confidence 6643
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=91.33 E-value=0.93 Score=42.00 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHH-HhhCCCcEEEecCCC--CHHHHHHHHH---hcCchHHhhhhh
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLI-SDAVSIPVIASSGAG--AVEHFSDVFR---KTNASAALAAGI 554 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l-~~~~~ipVIasGGi~--s~eDi~~l~~---~~G~~gv~vgsa 554 (578)
...++.+.++|++-+= +.... |.+...++ .....+||+..||-. +.+++.+..+ ..|+.|+++|+.
T Consensus 160 ~~aaria~ElGaDivK-~~~p~-------~~~~~~~~v~~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRn 231 (251)
T d1ojxa_ 160 AYAARIALELGADAMK-IKYTG-------DPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRN 231 (251)
T ss_dssp HHHHHHHHHHTCSEEE-ECCCS-------SHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred HHHHHHHHHhCCCEEE-ecCCC-------cHHHHHHHHHhcCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechh
Confidence 3557888999998554 33321 23444444 456688988887754 4666544332 269999999999
Q ss_pred hccCCCCHHHHHHHH
Q 045794 555 FHRKEVPIQSVKEHL 569 (578)
Q Consensus 555 ~~~~~~~~~~~~~~l 569 (578)
+.+.+- ..++.+.+
T Consensus 232 i~q~~~-p~~~~~al 245 (251)
T d1ojxa_ 232 VWQRRD-ALKFARAL 245 (251)
T ss_dssp HHTSTT-HHHHHHHH
T ss_pred hhCcCc-HHHHHHHH
Confidence 987663 44444444
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=91.20 E-value=0.084 Score=51.05 Aligned_cols=53 Identities=13% Similarity=0.028 Sum_probs=42.7
Q ss_pred hHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhccchhhh
Q 045794 342 MLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEDYL 405 (578)
Q Consensus 342 ~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~ 405 (578)
.++.++++.+.+ ..||..+|||.+.+| +.+++.+||+-|=++|+.+.+-+.++
T Consensus 229 al~~v~~~~~~~~~~~Iig~GGI~s~~D-----------a~e~i~aGAs~Vqv~Tal~~~Gp~~i 282 (312)
T d2b4ga1 229 ALANVNAFFRRCPDKLVFGCGGVYSGEE-----------AFLHILAGASMVQVGTALHDEGPIIF 282 (312)
T ss_dssp HHHHHHHHHHHCTTSEEEEESSCCSHHH-----------HHHHHHHTEEEEEESHHHHHHCTTHH
T ss_pred hhHHHHHHHHHcCCCceeecCCcCCHHH-----------HHHHHHcCCChheeehhhHhcCcHHH
Confidence 467788887776 466777799999877 99999999999999999987644444
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.20 E-value=0.17 Score=49.68 Aligned_cols=76 Identities=24% Similarity=0.207 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
+-++...+.|++.+.+-+-.+..- ..-...++.+.++.+.+ .+||.+.||||+=.| +-+.|.+||
T Consensus 229 ~da~~a~~~G~d~i~vsnhggr~~--d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~D-----------v~KALALGA 295 (349)
T d1tb3a1 229 EDAELAMKHNVQGIVVSNHGGRQL--DEVSASIDALREVVAAVKGKIEVYMDGGVRTGTD-----------VLKALALGA 295 (349)
T ss_dssp HHHHHHHHTTCSEEEECCGGGTSS--CSBCCHHHHHHHHHHHHTTSSEEEEESSCCSHHH-----------HHHHHHTTC
T ss_pred HHHHHHHHhhccceeeeccccccc--cccccchhhcceeeeccCCCeeEEeccCcCcHHH-----------HHHHHHcCC
Confidence 456666789999998877665321 12244577778887765 689999999999877 888999999
Q ss_pred ceeecchhhhc
Q 045794 389 DKISIGSDAVY 399 (578)
Q Consensus 389 ~~vv~gt~~~~ 399 (578)
+-|-+|...+.
T Consensus 296 ~~V~igrp~L~ 306 (349)
T d1tb3a1 296 RCIFLGRPILW 306 (349)
T ss_dssp SCEEESHHHHH
T ss_pred CEEEEChHHHH
Confidence 99999876664
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.01 E-value=0.23 Score=49.05 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=55.2
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCC-----CCCchhHHHHHHH---hhhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFP-----LGDLPMLQVLRLT---SENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~-----~~~~~~~~~i~~i---~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+.|+.+.+.|||-| .|-+..-..++ .-.-+.+..|.+. ++..++||+.+|||++..| +-+
T Consensus 160 e~a~~L~~aGaD~V-kVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GD-----------i~K 227 (365)
T d1zfja1 160 EGARALYDAGVDVV-KVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGD-----------IVK 227 (365)
T ss_dssp HHHHHHHHTTCSEE-EECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHH-----------HHH
T ss_pred HHHHHHHhcCCceE-EeeecccccccCcceeeeeccchhHHHHHHHHHHhCCceEEecCCcCcchh-----------hhh
Confidence 77888999999955 46653200010 0012445555444 4567899999999999987 889
Q ss_pred HHHcCcceeecchhhhcc
Q 045794 383 YFRSGADKISIGSDAVYA 400 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~ 400 (578)
.|.+|||.|.+|+.+...
T Consensus 228 Ala~GAd~VMlG~~lAg~ 245 (365)
T d1zfja1 228 ALAAGGNAVMLGSMFAGT 245 (365)
T ss_dssp HHHTTCSEEEESTTTTTB
T ss_pred hhhccCCEEEecchhccc
Confidence 999999999999987763
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.00 E-value=1.1 Score=40.22 Aligned_cols=159 Identities=18% Similarity=0.256 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHH----
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEY---- 383 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~---- 383 (578)
.-..+|.++...|- .+-++-.|..+-+ -.+-++..++..++|+....--.+.. +.+++.
T Consensus 22 TiaKLA~~~~~~g~-kV~lit~Dt~R~g------A~eQL~~~a~~l~i~~~~~~~~~d~~----------~~~~~~~~~~ 84 (207)
T d1okkd2 22 TIAKLGRYYQNLGK-KVMFCAGDTFRAA------GGTQLSEWGKRLSIPVIQGPEGTDPA----------ALAYDAVQAM 84 (207)
T ss_dssp HHHHHHHHHHTTTC-CEEEECCCCSSTT------HHHHHHHHHHHHTCCEECCCTTCCHH----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-cEEEEEecccccc------chhhHhhcccccCceEEeccCCccHH----------HHHHHHHHHH
Confidence 45568888887885 5888888865432 25666777888889997443333321 112222
Q ss_pred HHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhC---------CCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 384 FRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVY---------GNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
...+.|.|+|+|+-.... +.++++++.+.. -+..+++.+|.-.+
T Consensus 85 ~~~~~d~ilIDTaGr~~~----------d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~----------------- 137 (207)
T d1okkd2 85 KARGYDLLFVDTAGRLHT----------KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG----------------- 137 (207)
T ss_dssp HHHTCSEEEECCCCCCTT----------CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC-----------------
T ss_pred HHCCCCEEEcCccccchh----------hHHHHHHHHHHHHHhhhcccCCCceEEEEeecccC-----------------
Confidence 224789999999876421 224444443221 23456777775432
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcE-EEecCCCC
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPV-IASSGAGA 533 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipV-IasGGi~s 533 (578)
.-+..+..+.+...+++.+|+|-+|..-.. |.=++ +...+++|| ..+.|-+
T Consensus 138 ----------------------~~~~~~~~~~~~~~~~~~lI~TKlDet~~~-G~~l~----~~~~~~~Pi~~i~~Gq~- 189 (207)
T d1okkd2 138 ----------------------QNGLEQAKKFHEAVGLTGVIVTKLDGTAKG-GVLIP----IVRTLKVPIKFVGVGEG- 189 (207)
T ss_dssp ----------------------THHHHHHHHHHHHHCCSEEEEECTTSSCCC-TTHHH----HHHHHCCCEEEEECSSS-
T ss_pred ----------------------chHHHHHHHhhhccCCceEEEeccCCCCCc-cHHHH----HHHHHCCCEEEEeCCCC-
Confidence 114567888888999999999998865333 33222 334457887 4555644
Q ss_pred HHHHH
Q 045794 534 VEHFS 538 (578)
Q Consensus 534 ~eDi~ 538 (578)
++|+.
T Consensus 190 p~Dl~ 194 (207)
T d1okkd2 190 PDDLQ 194 (207)
T ss_dssp TTCEE
T ss_pred hHhCc
Confidence 77765
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=90.71 E-value=0.48 Score=45.09 Aligned_cols=195 Identities=17% Similarity=0.178 Sum_probs=110.6
Q ss_pred ecCCHHHHHHHHHHcCCCeEEEE--ecc----cCCC-CCCCCchhHHHHHHHhhhccccEEEeCC--ccc-cccCCCCcc
Q 045794 305 NLGKPVELARQYYKEGADEISFL--NIT----GFRD-FPLGDLPMLQVLRLTSENVFVPLTVGGG--IRD-FTDANGRHY 374 (578)
Q Consensus 305 ~~~~p~~~a~~~~~~g~~~i~~~--Dl~----~~~~-~~~~~~~~~~~i~~i~~~~~~pi~~gGG--ir~-~~d~~~~~~ 374 (578)
..-||.. |+...+.|++-+++- -+. |..| +.......++.+++|++.+.+||.+++- -.+ ...
T Consensus 22 ~~~D~~s-A~~~e~~Gf~a~~~sg~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~~~~------ 94 (289)
T d1muma_ 22 GTINANH-ALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFN------ 94 (289)
T ss_dssp ECSSHHH-HHHHHHTTCSCEEECHHHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHH------
T ss_pred cCCCHHH-HHHHHHcCCCEEEhhHHHHHHHccCCCCCCCCChHHHHHHHHHHhcccCCCeeecccccccccchH------
Confidence 3457754 477788999998873 122 2222 2223456778899999999999998632 121 111
Q ss_pred ChHHHHHHHHHcCcceeec-chhhhccchhhhhccccC--CchHHHHH---HHhCCC-Ce-EEEEEeccccccCCCCccc
Q 045794 375 SSLEVASEYFRSGADKISI-GSDAVYAAEDYLKTGVKT--GKSSLEQI---SRVYGN-QA-VVVSIDPRRVYITHPNDVE 446 (578)
Q Consensus 375 ~~~~~~~~~l~~Ga~~vv~-gt~~~~~~~~~~~~~~~~--~~~~l~~~---~~~~g~-~~-iv~slD~~~~~~~~~~~~~ 446 (578)
-.+.++++.++|+.-|.| ....-++.. ... ++.. -.+.+.++ .+.-+. +- |++-.|+..
T Consensus 95 -v~~~v~~~~~aGvagi~iEDq~~pk~~g-~~~-~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~---------- 161 (289)
T d1muma_ 95 -VARTVKSMIKAGAAGLHIEDQVGAKRCG-HRP-NKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALA---------- 161 (289)
T ss_dssp -HHHHHHHHHHHTCSEEEEECBCCCSSTT-CCS-CCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHH----------
T ss_pred -HHHHHHHHHHCCCCEEEecCcccccccc-ccc-ccceecHHHHHHHHHHHHHhcCCcchhheecccccc----------
Confidence 136789999999988888 221111000 000 0000 01222332 222221 22 333333321
Q ss_pred cceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEE
Q 045794 447 FKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVI 526 (578)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVI 526 (578)
..|.. ..++-++.+.+.|++.+.+..+. +.+.++++++.+++|+.
T Consensus 162 ----------------------~~g~~-----eAi~R~~aY~eAGAD~vf~~~~~--------~~~~~~~~~~~~~~Pl~ 206 (289)
T d1muma_ 162 ----------------------VEGLD-----AAIERAQAYVEAGAEMLFPEAIT--------ELAMYRQFADAVQVPIL 206 (289)
T ss_dssp ----------------------HHCHH-----HHHHHHHHHHHTTCSEEEETTCC--------CHHHHHHHHHHHCSCBE
T ss_pred ----------------------ccCHH-----HHHHHHHHhhhcCCcEEEecCCC--------CHHHHHHHHHhcCCCEE
Confidence 01111 35778889999999988876543 46889999998888875
Q ss_pred E---ecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 527 A---SSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 527 a---sGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
+ .||-...-++.+|.+ .|+.-++.+...
T Consensus 207 ~~~~~~~~~p~~s~~eL~~-~Gv~~v~~~~~~ 237 (289)
T d1muma_ 207 ANITEFGATPLFTTDELRS-AHVAMALYPLSA 237 (289)
T ss_dssp EECCSSSSSCCCCHHHHHH-TTCSEEEESSHH
T ss_pred EeecCcCCCccchHHHHHH-hccceEEechHH
Confidence 4 344433334566664 888877765544
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.54 E-value=0.15 Score=49.84 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcce
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~ 390 (578)
+-++...+.|++.+.+-+-.+..-. ......+++.++....++||.+.||||+--| +-+.|.+||+-
T Consensus 234 ~~~~~a~~~g~~~~~~s~~gg~~~~--~~~~~~~~l~~i~~~~~~~viasGGIR~G~D-----------v~KALaLGAd~ 300 (353)
T d1p4ca_ 234 EDADRCIAEGADGVILSNHGGRQLD--CAISPMEVLAQSVAKTGKPVLIDSGFRRGSD-----------IVKALALGAEA 300 (353)
T ss_dssp HHHHHHHHTTCSEEEECCGGGTSCT--TCCCGGGTHHHHHHHHCSCEEECSSCCSHHH-----------HHHHHHTTCSC
T ss_pred hhHHHHHhcCCchhhhccccccccc--ccccchhcccchhcccccceeecCCcCchHH-----------HHHHHHcCCCE
Confidence 4566777899999888776543211 1233456667777778899999999999877 88899999999
Q ss_pred eecchhhhc
Q 045794 391 ISIGSDAVY 399 (578)
Q Consensus 391 vv~gt~~~~ 399 (578)
|-+|...+.
T Consensus 301 vgigrp~L~ 309 (353)
T d1p4ca_ 301 VLLGRATLY 309 (353)
T ss_dssp EEESHHHHH
T ss_pred EEEcHHHHH
Confidence 999876553
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.47 E-value=0.14 Score=45.12 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCH-HHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDM-DLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~-~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
++-++++.+.|++.|++=..+-+ ++ +.++.+.+.. .+.+-+|||| +++.+.+..+ +|+|.+++|+..|.
T Consensus 89 ~~q~~~a~~~~~diImLDN~sp~------~~k~~v~~~~~~~~~i~lEaSGgI-~~~ni~~ya~-~GvD~IS~galt~s 159 (169)
T d1qpoa1 89 LEQLDAVLPEKPELILLDNFAVW------QTQTAVQRRDSRAPTVMLESSGGL-SLQTAATYAE-TGVDYLAVGALTHS 159 (169)
T ss_dssp HHHHHHHGGGCCSEEEEETCCHH------HHHHHHHHHHHHCTTCEEEEESSC-CTTTHHHHHH-TTCSEEECGGGTSS
T ss_pred HHHhhhhhhcCCcEEEecCcChH------hHHHHHHHhhccCCeeEEEEeCCC-CHHHHHHHHH-cCCCEEECCccccC
Confidence 56778888999998776544322 22 2333333332 4678899999 7899999985 99999999988885
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.38 E-value=0.47 Score=38.45 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+..+..+.+.+...+ ++++|+.--+ +.| +++++++++..++|||+-.+-.+.++..++++ .|+++.+ .+
T Consensus 32 ~~~eal~~~~~~~~d-lillD~~mp~-~~G--~~~~~~i~~~~~~pvI~lt~~~~~~~~~~a~~-~Ga~d~l------~K 100 (117)
T d2a9pa1 32 NGREALEQFEAEQPD-IIILDLMLPE-IDG--LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLE-LGADDYV------TK 100 (117)
T ss_dssp SHHHHHHHHHHHCCS-EEEECSSCSS-SCH--HHHHHHHHTTCCCCEEEEESCCSHHHHHHHHH-HTCSEEE------ES
T ss_pred CHHHHHHHHHhcCCC-EEEeccccCC-CCc--cHHHHHHHhCCCCCEEEEecCCCHHHHHHHHH-cCCCEEE------EC
Confidence 446677777777776 6668875432 223 68999998877899999888899999888885 8888654 57
Q ss_pred CCCHHHHHHHHHh
Q 045794 559 EVPIQSVKEHLYK 571 (578)
Q Consensus 559 ~~~~~~~~~~l~~ 571 (578)
++...++...+++
T Consensus 101 P~~~~~L~~~i~~ 113 (117)
T d2a9pa1 101 PFSNRELQARVKA 113 (117)
T ss_dssp SCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8888888776653
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=90.22 E-value=0.13 Score=45.90 Aligned_cols=80 Identities=15% Similarity=0.079 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHcCCCeEEEE-ecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFL-NITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~-Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
.+.+.++.+.+.+++.+.+. -.+.-..+.......++.+++... ...++.++||++- ++ ++++.++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~~~-~~~~i~~~gGi~~-~~-----------~~~~~~~ 181 (213)
T d1q6oa_ 115 WTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSD-MGFKVTVTGGLAL-ED-----------LPLFKGI 181 (213)
T ss_dssp CCHHHHHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHH-TTCEEEEESSCCG-GG-----------GGGGTTS
T ss_pred CCHHHHHHHHHhHHHHHHHHHhcccCcCCeeCCHHHHHHHHHhhc-cCceEecCCCcCc-CC-----------HHHHHHc
Confidence 44566788888888876542 111111122223445666666654 5689999999985 33 8889999
Q ss_pred Ccceeecchhhhcc
Q 045794 387 GADKISIGSDAVYA 400 (578)
Q Consensus 387 Ga~~vv~gt~~~~~ 400 (578)
|||.+|+|++..+.
T Consensus 182 Gad~iVVGr~I~~a 195 (213)
T d1q6oa_ 182 PIHVFIAGRSIRDA 195 (213)
T ss_dssp CCSEEEESHHHHTS
T ss_pred CCCEEEEChhhcCC
Confidence 99999999988864
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=90.22 E-value=0.17 Score=49.94 Aligned_cols=81 Identities=22% Similarity=0.194 Sum_probs=57.3
Q ss_pred ecCCHHHHHHHHHHcCCCeEEEEecccCCCC------CCCCchhHHHHHHHhhh---------ccccEEEeCCccccccC
Q 045794 305 NLGKPVELARQYYKEGADEISFLNITGFRDF------PLGDLPMLQVLRLTSEN---------VFVPLTVGGGIRDFTDA 369 (578)
Q Consensus 305 ~~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~------~~~~~~~~~~i~~i~~~---------~~~pi~~gGGir~~~d~ 369 (578)
+...| +.++.+.+.|+| ++.|.+..=.-+ ..+ -+.+..|.+.++. .++||+.+||||+..|
T Consensus 159 NVaT~-e~~~~L~~aGaD-~vkVGIG~Gs~CTTr~~tGvG-~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gd- 234 (362)
T d1pvna1 159 NIVDG-EGFRYLADAGAD-FIKIGIGGGSICITREQKGIG-RGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYH- 234 (362)
T ss_dssp EECSH-HHHHHHHHHTCS-EEEECSSCSTTBCHHHHTCBC-CCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHH-
T ss_pred cccCH-HHHHHHHHhCCc-EEEecccccccccchhhhccC-CchHHHHHHHHHHHHHhhhhcccCCceeeccccCcccc-
Confidence 33455 678889999999 455666421000 012 3556677666432 3599999999999987
Q ss_pred CCCccChHHHHHHHHHcCcceeecchhhhc
Q 045794 370 NGRHYSSLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 370 ~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
+-+.|.+|||.|.+|+.+-.
T Consensus 235 ----------i~KAla~GAd~VM~G~~lAg 254 (362)
T d1pvna1 235 ----------MTLALAMGADFIMLGRYFAR 254 (362)
T ss_dssp ----------HHHHHHTTCSEEEESHHHHT
T ss_pred ----------eeEEEEEeccceeehhhhhc
Confidence 88999999999999987765
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=89.84 E-value=0.48 Score=43.53 Aligned_cols=139 Identities=7% Similarity=0.074 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCcce--eecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGADK--ISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~~--vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++++.|... +=+|.. . +.+.++.+.+.+|.- -+.+|+..
T Consensus 21 ~~~~~~~~~~G~~~~KiKvg~~--~------------D~~~v~~ir~~~~d~--~l~vD~n~------------------ 66 (243)
T d1r0ma1 21 VDLVRRHVEQGYRRIKLKIKPG--W------------DVQPVRATREAFPDI--RLTVDANS------------------ 66 (243)
T ss_dssp HHHHHHHHHTTCSCEEEECBTT--B------------SHHHHHHHHHHCTTS--CEEEECTT------------------
T ss_pred HHHHHHHHHcCCCEEEEEcCcc--h------------hHHHHHHHHHhccCc--eEEEeccc------------------
Confidence 47788888999764 334421 1 236788888889843 45578543
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCH
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAV 534 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~ 534 (578)
+|... +... ++.+.+.++..+ +.-...-|++.++++++.+++||.+.-.+.+.
T Consensus 67 ----------------~~~~~---~a~~-~~~l~~~~~~~i-------EeP~~~~d~~~~~~l~~~~~ipia~gE~~~~~ 119 (243)
T d1r0ma1 67 ----------------AYTLA---DAGR-LRQLDEYDLTYI-------EQPLAWDDLVDHAELARRIRTPLCLDESVASA 119 (243)
T ss_dssp ----------------CCCGG---GHHH-HHTTGGGCCSCE-------ECCSCTTCSHHHHHHHHHCSSCEEESTTCCSH
T ss_pred ----------------cCchH---HHHH-hhhhhhccchhh-------hhhccccchHHHHHHhhcCCcccccccchhhh
Confidence 22221 1233 355566554321 11122337889999999999999999999999
Q ss_pred HHHHHHHHhcCchHHhhhhhhccC-CCCHHHHHHHHHhCCCeec
Q 045794 535 EHFSDVFRKTNASAALAAGIFHRK-EVPIQSVKEHLYKEGIEVR 577 (578)
Q Consensus 535 eDi~~l~~~~G~~gv~vgsa~~~~-~~~~~~~~~~l~~~~i~v~ 577 (578)
.++..+++...++.+. -....-| -....++.+.+.+.|++|-
T Consensus 120 ~~~~~~i~~~~~d~v~-~d~~~~GGit~~~~i~~~A~~~gi~v~ 162 (243)
T d1r0ma1 120 SDARKALALGAGGVIN-LKVARVGGHAESRRVHDVAQSFGAPVW 162 (243)
T ss_dssp HHHHHHHHHTSCSEEE-ECTTTTTSHHHHHHHHHHHHHTTCCEE
T ss_pred hhhhhhhhccccccee-cccceeccHHHHHHHHHHHHHCCCcee
Confidence 9999999754456554 4444434 3346788888888888763
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=89.71 E-value=0.94 Score=42.56 Aligned_cols=120 Identities=11% Similarity=0.102 Sum_probs=84.1
Q ss_pred chHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCC
Q 045794 413 KSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGA 492 (578)
Q Consensus 413 ~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~ 492 (578)
.+.++.+.+.+|++ +-+.+|+... |.. -+.+.+++.++++++
T Consensus 81 i~~v~aiRe~vG~~-~~l~vDan~~----------------------------------~~~---~~Ai~~~~~L~~~~l 122 (278)
T d2gl5a1 81 EARIAAMREAMGDD-ADIIVEIHSL----------------------------------LGT---NSAIQFAKAIEKYRI 122 (278)
T ss_dssp HHHHHHHHHHHCSS-SEEEEECTTC----------------------------------SCH---HHHHHHHHHHGGGCE
T ss_pred HHHHHHHHHHhccc-cceeeccccc----------------------------------ccc---hhhHHHHHHhccccc
Confidence 46678888889965 7778886432 211 135778888888765
Q ss_pred cEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhC
Q 045794 493 GEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 493 ~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
.. +=+ -..--|++.++++++.+++||.++-.+.+.++++.+++...++.+.+--....|-.....+.+.+.+.
T Consensus 123 ~w--iEe-----Pi~~~d~~~~~~L~~~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~kia~la~~~ 195 (278)
T d2gl5a1 123 FL--YEE-----PIHPLNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYANIY 195 (278)
T ss_dssp EE--EEC-----SSCSSCHHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTT
T ss_pred ce--ecc-----cccccchhhhhhhccccccceecccccCChHHHhhhhccccceeEeeccccccchhhHHHhhhhhhhh
Confidence 32 222 12223889999999999999999888999999999997555565554433344545577788888888
Q ss_pred CCeec
Q 045794 573 GIEVR 577 (578)
Q Consensus 573 ~i~v~ 577 (578)
|++|-
T Consensus 196 gi~v~ 200 (278)
T d2gl5a1 196 DTTVQ 200 (278)
T ss_dssp TCEEC
T ss_pred ccccc
Confidence 88873
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=89.67 E-value=1.8 Score=39.30 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCC-CCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHH
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQG-KGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAA 549 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~-~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv 549 (578)
.+...++.+.+.|++.|= |+ .|.. .|...+.++.+++.+ .+.|=++|||++.+++.++++ +|++-+
T Consensus 133 ei~~a~~~a~~aGadfiK-TS---TG~~~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~-~Ga~Ri 201 (225)
T d1mzha_ 133 EIKKAVEICIEAGADFIK-TS---TGFAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIE-AGADRI 201 (225)
T ss_dssp HHHHHHHHHHHHTCSEEE-CC---CSCSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHH-TTCSEE
T ss_pred HHHHHHHHHHHcccceEe-ec---CCCCCCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHH-hchhhe
Confidence 367788889999999665 43 2322 345666666665544 588999999999999999996 899853
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.62 E-value=0.64 Score=37.86 Aligned_cols=81 Identities=10% Similarity=0.141 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+..+..+.+.+.-++ +++.|+.--+ +.| +++++++++..++|+|+-.|-.+.++..++++ .|+++.+ .+
T Consensus 34 ~~~~al~~l~~~~~d-lii~D~~mp~-~~G--~~~~~~~r~~~~~pii~lt~~~~~~~~~~a~~-~Ga~dyl------~K 102 (121)
T d1xhfa1 34 DGAEMHQILSEYDIN-LVIMDINLPG-KNG--LLLARELREQANVALMFLTGRDNEVDKILGLE-IGADDYI------TK 102 (121)
T ss_dssp SHHHHHHHHHHSCCS-EEEECSSCSS-SCH--HHHHHHHHHHCCCEEEEEESCCSHHHHHHHHH-HTCSEEE------ES
T ss_pred ChHHHHHHHHhcCCC-EEEeecccCC-ccC--cHHHHHHHhcCCCcEEEEECCCCHHHHHHHHH-cCCCEEE------eC
Confidence 456777788888776 6667875432 344 68889998888999999999999999999885 8988765 56
Q ss_pred CCCHHHHHHHHH
Q 045794 559 EVPIQSVKEHLY 570 (578)
Q Consensus 559 ~~~~~~~~~~l~ 570 (578)
++...++...++
T Consensus 103 P~~~~~L~~~v~ 114 (121)
T d1xhfa1 103 PFNPRELTIRAR 114 (121)
T ss_dssp SCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 788777766554
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=89.59 E-value=0.27 Score=44.39 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFR 385 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~ 385 (578)
.+|-|+.+.+ +.|++.+-+.=-+.. + ...++.+..-+ ++|+..-||| +.++ +.+|++
T Consensus 111 ~TpsEi~~A~-~~G~~~lK~fPa~~~-------G--~~~lk~l~~p~p~i~~iptGGI-~~~n-----------~~~~l~ 168 (202)
T d1wa3a1 111 MTPTELVKAM-KLGHTILKLFPGEVV-------G--PQFVKAMKGPFPNVKFVPTGGV-NLDN-----------VCEWFK 168 (202)
T ss_dssp CSHHHHHHHH-HTTCCEEEETTHHHH-------H--HHHHHHHHTTCTTCEEEEBSSC-CTTT-----------HHHHHH
T ss_pred CcHHHHHHHH-HCCCCEEEecchhhc-------C--HHHHHHHhCcccCCcEEeeCCC-CHHH-----------HHHHHH
Confidence 4888888876 689998877543321 1 25677776654 6899999999 5555 999999
Q ss_pred cCcceeecchhhhcc
Q 045794 386 SGADKISIGSDAVYA 400 (578)
Q Consensus 386 ~Ga~~vv~gt~~~~~ 400 (578)
+|+..|.+||..++.
T Consensus 169 aga~avg~Gs~l~~~ 183 (202)
T d1wa3a1 169 AGVLAVGVGSALVKG 183 (202)
T ss_dssp HTCSCEEECHHHHCS
T ss_pred CCCeEEEEchhhcCC
Confidence 999999999998874
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.49 E-value=0.43 Score=42.88 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=38.2
Q ss_pred HHHHHHHhhCC-CcEEEecCCCC-HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHh
Q 045794 512 DLIKLISDAVS-IPVIASSGAGA-VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 512 ~li~~l~~~~~-ipVIasGGi~s-~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~ 571 (578)
+.++.+++..+ --.+...||+. -.+..++.+ .|++-++||++++..+.+.+.++++..+
T Consensus 144 ~~~~~~r~~~~~~~~i~~pGI~~~~~~~~~ai~-~Gad~iVvGR~I~~a~dP~~aa~~i~~~ 204 (206)
T d2czda1 144 ERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVK-AGADYIIVGRAIYNAPNPREAAKAIYDE 204 (206)
T ss_dssp HHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHH-HTCSEEEECHHHHTSSSHHHHHHHHHHH
T ss_pred hhhhhhhhhhcccceEECCCccccCCCHHHHHH-hCCCEEEEChhhccCCCHHHHHHHHHHH
Confidence 33444544442 12355566653 246666764 7999999999999888777777766543
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=89.35 E-value=0.2 Score=42.45 Aligned_cols=87 Identities=15% Similarity=0.083 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCH-HHHHHHHhh--CCCcEEEecCCCC----HHHHHHHHHhcCchHH
Q 045794 477 PIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDM-DLIKLISDA--VSIPVIASSGAGA----VEHFSDVFRKTNASAA 549 (578)
Q Consensus 477 ~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~-~li~~l~~~--~~ipVIasGGi~s----~eDi~~l~~~~G~~gv 549 (578)
+..+.++++.+.+.+++-|.+-.... ..+ +.+ ++++.+++. .++||+++|++.+ ..++..-+++.|++++
T Consensus 40 ~~p~e~iv~a~~~~~~d~v~lS~~~~-~~~--~~~~~~~~~l~~~~~~~i~iivGG~~~~~~~~~~~~~~~l~~~Gv~~i 116 (137)
T d1ccwa_ 40 LSPQELFIKAAIETKADAILVSSLYG-QGE--IDCKGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRV 116 (137)
T ss_dssp EECHHHHHHHHHHHTCSEEEEEECSS-THH--HHHTTHHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEE
T ss_pred ccCHHHHHHHHHhcCCCEEEEeeccc-cch--HHHHHHHHHHHHhccCCCEEEEeCCcCCCccccHHHHHHHHHcCCCEE
Confidence 45789999999999998666544322 221 111 344555443 3699999998864 4555555555888866
Q ss_pred hhhhhhccCCCCHHHHHHHHHhC
Q 045794 550 LAAGIFHRKEVPIQSVKEHLYKE 572 (578)
Q Consensus 550 ~vgsa~~~~~~~~~~~~~~l~~~ 572 (578)
. ...-+++++.++++++
T Consensus 117 f------~~~t~~~~~~~~l~~~ 133 (137)
T d1ccwa_ 117 Y------APGTPPEVGIADLKKD 133 (137)
T ss_dssp C------CTTCCHHHHHHHHHHH
T ss_pred E------CCCCCHHHHHHHHHHH
Confidence 4 4456677888877653
|
| >d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: NAD kinase/diacylglycerol kinase-like superfamily: NAD kinase/diacylglycerol kinase-like family: NAD kinase-like domain: Inorganic polyphosphate/ATP-NAD kinase PpnK species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.84 E-value=0.32 Score=45.39 Aligned_cols=71 Identities=18% Similarity=0.319 Sum_probs=51.3
Q ss_pred cEEEEEECCCCCHHHHHHHHHHCCCeEEEeCCc-cCCCCCCEEEECCCCCchHHHHHHHhhcHHHHHHHHHhCCCCEEEE
Q 045794 48 SVVTLLDYGAGNVRSVRNAIRHLGFGIKDVQTP-EDILNANRLIFPGVGAFAAAMDVLNKTGMAEALCAYIEKDRPFLGI 126 (578)
Q Consensus 48 ~~I~vld~~~g~~~~i~~~L~~~Gv~v~~v~~~-~dl~~~DGlILpGGg~~~~~~~~l~~~~l~~~i~~~~~~g~PIlGI 126 (578)
++++|+=-..+....+.+.|++.++++.++..+ ++++++|.+|.-||.- -++..++.+ +...||+||
T Consensus 1 mr~~iv~k~d~~~k~i~e~l~~~~~~~~~~~~~~~~~~~~D~vi~iGGDG-----------T~L~a~~~~-~~~~PilGI 68 (249)
T d1z0sa1 1 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDG-----------TILRILQKL-KRCPPIFGI 68 (249)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHH-----------HHHHHHTTC-SSCCCEEEE
T ss_pred CeEEEEECCchhHHHHHHHHHhcCCeEEEecCccccccCCCEEEEECCcH-----------HHHHHHHHh-cCCCcEEEE
Confidence 457777655678889999999999999887654 5578899999888631 122334332 356899999
Q ss_pred echH
Q 045794 127 CLGL 130 (578)
Q Consensus 127 ClG~ 130 (578)
-.|.
T Consensus 69 n~G~ 72 (249)
T d1z0sa1 69 NTGR 72 (249)
T ss_dssp ECSS
T ss_pred Cccc
Confidence 8875
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.84 E-value=0.66 Score=38.22 Aligned_cols=81 Identities=12% Similarity=0.203 Sum_probs=56.2
Q ss_pred HHHHHHHHHHc--CCcEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 480 AYELAKAVEDL--GAGEILLNCIDCDGQGKGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 480 ~~e~~~~~~~~--G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
.++.+++.... .++ ++++|+.--+ +. .+++++++++.. .+|||+--+-.+.++..++++ .|+++.+
T Consensus 38 Al~~l~~~~~~~~~~d-lillD~~mP~-~d--G~el~~~ir~~~~~~~piI~lT~~~~~~~~~~~~~-~G~~~~l----- 107 (128)
T d2r25b1 38 AFDKVKELTSKGENYN-MIFMDVQMPK-VD--GLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLE-SGMNGFL----- 107 (128)
T ss_dssp HHHHHHHHHHHTCCCS-EEEECSCCSS-SC--HHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHH-TTCSEEE-----
T ss_pred HHHHHHhhhhccCCCC-EEEEEeCCCC-CC--HHHHHHHHHHccCCCCeEEEEECCCCHHHHHHHHH-cCCCEEE-----
Confidence 34555544332 343 6778875432 22 368888886543 689998888899999999986 8988765
Q ss_pred ccCCCCHHHHHHHHHh
Q 045794 556 HRKEVPIQSVKEHLYK 571 (578)
Q Consensus 556 ~~~~~~~~~~~~~l~~ 571 (578)
.+++...++.+.+++
T Consensus 108 -~KP~~~~~L~~~l~~ 122 (128)
T d2r25b1 108 -SKPIKRPKLKTILTE 122 (128)
T ss_dssp -ESSCCHHHHHHHHHH
T ss_pred -ECCCCHHHHHHHHHH
Confidence 678888888887764
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=88.72 E-value=2.3 Score=38.15 Aligned_cols=174 Identities=17% Similarity=0.164 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccCh--HHHHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSS--LEVASEYFR 385 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~--~~~~~~~l~ 385 (578)
+-.++++.-.++|+.-+.+ +....++.++..+..++ .++.-| .+.. |..++. ...++++++
T Consensus 19 ~i~~lc~~A~~~~~~aVcV------------~P~~v~~a~~~l~~s~v--~v~~Vi-gFP~--G~~~~~~k~~e~~~ai~ 81 (211)
T d1ub3a_ 19 EVAKAAEEALEYGFYGLCI------------PPSYVAWVRARYPHAPF--RLVTVV-GFPL--GYQEKEVKALEAALACA 81 (211)
T ss_dssp HHHHHHHHHHHHTCSEEEC------------CGGGHHHHHHHCTTCSS--EEEEEE-STTT--CCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCeEEEE------------CHHHHHHHHHHccCCCC--ceEEEE-eccc--ccCcHHHHHHHHHHHHH
Confidence 4455666666667665442 13346666666554433 333334 2332 433332 456788889
Q ss_pred cCcce--eecchhhhcc-chhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 386 SGADK--ISIGSDAVYA-AEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 386 ~Ga~~--vv~gt~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
.||+- +|++-.++.+ +.+.+. +.+.++.+..+...+-+-|..-
T Consensus 82 ~GA~EiD~V~n~~~~~~g~~~~v~-------~ei~~v~~~~~~~~lKVIlEt~--------------------------- 127 (211)
T d1ub3a_ 82 RGADEVDMVLHLGRAKAGDLDYLE-------AEVRAVREAVPQAVLKVILETG--------------------------- 127 (211)
T ss_dssp TTCSEEEEECCHHHHHTTCHHHHH-------HHHHHHHHHSTTSEEEEECCGG---------------------------
T ss_pred cCCCeEEEeeccchhhcCCHHHHH-------HHHHHHHHhccCCceEEEeccc---------------------------
Confidence 99985 4556555543 222332 4566666666532111211110
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC-CCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG-KGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~-~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~ 539 (578)
. .++-.+...++.+.+.|++.|= |+. |.. .|...+.++.+++.. .+.|=++|||++.+++.+
T Consensus 128 ----------~-L~~~ei~~a~~~a~~aGadfiK-TST---G~~~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~ 192 (211)
T d1ub3a_ 128 ----------Y-FSPEEIARLAEAAIRGGADFLK-TST---GFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALR 192 (211)
T ss_dssp ----------G-SCHHHHHHHHHHHHHHTCSEEE-CCC---SSSSCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHH
T ss_pred ----------c-CCHHHHHHHHHHHHHhccceEE-ecC---CCCCCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHH
Confidence 0 0122356778888899998544 543 433 355666666665544 478889999999999999
Q ss_pred HHHhcCchH
Q 045794 540 VFRKTNASA 548 (578)
Q Consensus 540 l~~~~G~~g 548 (578)
+++ +|++-
T Consensus 193 ~l~-aGa~r 200 (211)
T d1ub3a_ 193 MLK-AGASR 200 (211)
T ss_dssp HHH-TTCSE
T ss_pred HHH-HhhhH
Confidence 996 88874
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=88.60 E-value=0.74 Score=41.69 Aligned_cols=84 Identities=12% Similarity=0.024 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+...+++.+.+.|++.|=+|-.+.. -++.++++++...-=++..|.|-+.++++++.+ .|++-++ .
T Consensus 27 ~~~~~~~al~~~Gi~~iEitl~~~~------a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~-aGa~Fiv-------S 92 (212)
T d1vhca_ 27 DILPLADTLAKNGLSVAEITFRSEA------AADAIRLLRANRPDFLIAAGTVLTAEQVVLAKS-SGADFVV-------T 92 (212)
T ss_dssp GHHHHHHHHHHTTCCEEEEETTSTT------HHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHH-HTCSEEE-------C
T ss_pred HHHHHHHHHHHCCCCEEEEeCCChh------HHHHHHHHHhcCCCceEeeeecccHHHHHHHHh-hCCcEEE-------C
Confidence 5788999999999998888865432 358889998776445799999999999999986 8888665 3
Q ss_pred CCCHHHHHHHHHhCCCee
Q 045794 559 EVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 559 ~~~~~~~~~~l~~~~i~v 576 (578)
+..-.++.+++++.++++
T Consensus 93 P~~~~~v~~~a~~~~i~~ 110 (212)
T d1vhca_ 93 PGLNPKIVKLCQDLNFPI 110 (212)
T ss_dssp SSCCHHHHHHHHHTTCCE
T ss_pred CCCCHHHHHHHHhcCCCc
Confidence 333457888888888864
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=88.07 E-value=0.49 Score=46.28 Aligned_cols=75 Identities=25% Similarity=0.212 Sum_probs=56.4
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHHHcCc
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGA 388 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga 388 (578)
+-+....+.|++.+.+-+..+.. ...-....+.+..+.+.+ ++||.++||||+=-| +-+.+.+||
T Consensus 236 ~da~~a~~~g~~~~~vsnhggr~--ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~D-----------i~KALaLGA 302 (359)
T d1goxa_ 236 EDARLAVQHGAAGIIVSNHGARQ--LDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTD-----------VFKALALGA 302 (359)
T ss_dssp HHHHHHHHTTCSEEEECCGGGTS--STTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHH-----------HHHHHHHTC
T ss_pred HHHHHHHHccccceecccccccc--cccccchhhhchhhhhccCCccceeeccCcCcHHH-----------HHHHHHcCC
Confidence 55666678999999888776532 112245567777776655 589999999999877 888999999
Q ss_pred ceeecchhhh
Q 045794 389 DKISIGSDAV 398 (578)
Q Consensus 389 ~~vv~gt~~~ 398 (578)
+.|-+|-..+
T Consensus 303 d~vgigrp~L 312 (359)
T d1goxa_ 303 AGVFIGRPVV 312 (359)
T ss_dssp SEEEECHHHH
T ss_pred CEEEEcHHHH
Confidence 9999986544
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=87.97 E-value=0.8 Score=41.53 Aligned_cols=84 Identities=12% Similarity=0.081 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+..++++.+.+.|+..+=+|-.+.+ -++.++.+++...-=++..|.|.+.++++++.+ .|++-++ .
T Consensus 30 ~a~~~~~al~~~Gi~~iEitl~~p~------a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~-aGa~Fiv-------s 95 (216)
T d1mxsa_ 30 DILPLADALAAGGIRTLEVTLRSQH------GLKAIQVLREQRPELCVGAGTVLDRSMFAAVEA-AGAQFVV-------T 95 (216)
T ss_dssp GHHHHHHHHHHTTCCEEEEESSSTH------HHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHH-HTCSSEE-------C
T ss_pred HHHHHHHHHHHCCCCEEEEeCCChh------HHHHHHHHHHhCCCcceeeeeeecHHHHHHHHh-CCCCEEE-------C
Confidence 5789999999999998777765432 358899998876545799999999999999986 8888665 3
Q ss_pred CCCHHHHHHHHHhCCCee
Q 045794 559 EVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 559 ~~~~~~~~~~l~~~~i~v 576 (578)
+..-.++.+++++.++++
T Consensus 96 P~~~~~v~~~a~~~~i~~ 113 (216)
T d1mxsa_ 96 PGITEDILEAGVDSEIPL 113 (216)
T ss_dssp SSCCHHHHHHHHHCSSCE
T ss_pred CCCcHHHHHHHHhcCCCc
Confidence 334567888888888864
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=87.76 E-value=0.43 Score=43.32 Aligned_cols=66 Identities=27% Similarity=0.396 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcCcce
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADK 390 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~ 390 (578)
.+++...+.|++.|= --.|... ......+..++++.... .+.|-+.||||++++ +.+++++|++|
T Consensus 136 ~a~~~a~~aGadfiK--TSTG~~~-~gat~e~v~~m~~~~~~-~~~iKasGGIrt~~~-----------a~~~l~aGa~r 200 (211)
T d1ub3a_ 136 RLAEAAIRGGADFLK--TSTGFGP-RGASLEDVALLVRVAQG-RAQVKAAGGIRDRET-----------ALRMLKAGASR 200 (211)
T ss_dssp HHHHHHHHHTCSEEE--CCCSSSS-CCCCHHHHHHHHHHHTT-SSEEEEESSCCSHHH-----------HHHHHHTTCSE
T ss_pred HHHHHHHHhccceEE--ecCCCCC-CCCCHHHHHHHHHHhCC-CceEECcCCCCCHHH-----------HHHHHHHhhhH
Confidence 455666678998432 1123211 11123344444444431 466888999999876 99999999997
Q ss_pred e
Q 045794 391 I 391 (578)
Q Consensus 391 v 391 (578)
+
T Consensus 201 i 201 (211)
T d1ub3a_ 201 L 201 (211)
T ss_dssp E
T ss_pred h
Confidence 4
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=87.44 E-value=0.93 Score=41.28 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCC-CCchhHHHHHHHhh-hccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPL-GDLPMLQVLRLTSE-NVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~-~~~~~~~~i~~i~~-~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.++.++.+ ..+.|+|.+.+==+=.....+. ....-.+.++.+.+ .+.+||.+-||| +.++ +.+++
T Consensus 123 h~~~e~~~-a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~~~~~Pv~AiGGI-~~~n-----------i~~l~ 189 (226)
T d2tpsa_ 123 HTMSEVKQ-AEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGI-TIDN-----------AAPVI 189 (226)
T ss_dssp CSHHHHHH-HHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSC-CTTT-----------SHHHH
T ss_pred cchHHHHH-HHhCcCCeEEEecccccccccccccccccchhHHHHHhcCCCCEEEecCC-CHHH-----------HHHHH
Confidence 46555544 4567999887644321110011 11122456666654 468999999999 4455 99999
Q ss_pred HcCcceeecchhhhcc
Q 045794 385 RSGADKISIGSDAVYA 400 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~~ 400 (578)
++|++.|++.+..+..
T Consensus 190 ~~Ga~giAvis~I~~a 205 (226)
T d2tpsa_ 190 QAGADGVSMISAISQA 205 (226)
T ss_dssp HTTCSEEEESHHHHTS
T ss_pred HhCCCEEEEhHHhhcC
Confidence 9999999999988874
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=87.01 E-value=0.79 Score=42.27 Aligned_cols=143 Identities=12% Similarity=0.086 Sum_probs=91.7
Q ss_pred HHHHHHHHHcCcc--eeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeecc
Q 045794 377 LEVASEYFRSGAD--KISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTD 454 (578)
Q Consensus 377 ~~~~~~~l~~Ga~--~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~ 454 (578)
.+.++++++.|.. |+=+|...-.+ .+.++++.+.+|++ +-+.+|+...
T Consensus 20 ~~~a~~~~~~Gf~~~KikvG~~~~~d------------i~~v~~vr~~~g~~-~~l~vDaN~~----------------- 69 (252)
T d1yeya1 20 VRLAKEAVADGFRTIKLKVGANVQDD------------IRRCRLARAAIGPD-IAMAVDANQR----------------- 69 (252)
T ss_dssp HHHHHHHHHTTCSEEEEECCSCHHHH------------HHHHHHHHHHHCSS-SEEEEECTTC-----------------
T ss_pred HHHHHHHHHcCCCEEEEECCCCHHHH------------HHHHHHHHHHhCCC-ceEeeccccC-----------------
Confidence 4567888888876 45556532221 36788998999865 6678886432
Q ss_pred CCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhh-CCCcEEEecCCCC
Q 045794 455 LGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDA-VSIPVIASSGAGA 533 (578)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~-~~ipVIasGGi~s 533 (578)
|.. -+...+++.++++++..+ +.=..-.|++.+.++.+. +.+||.+.=.+.+
T Consensus 70 -----------------~~~---~~A~~~~~~l~~~~~~~i-------EeP~~~~d~~~~~~~~~~~~~ipia~gE~~~~ 122 (252)
T d1yeya1 70 -----------------WDV---GPAIDWMRQLAEFDIAWI-------EEPTSPDDVLGHAAIRQGITPVPVSTGEHTQN 122 (252)
T ss_dssp -----------------CCH---HHHHHHHHTTGGGCCSCE-------ECCSCTTCHHHHHHHHHHSTTSCEECCTTCCS
T ss_pred -----------------cch---HHHHHHHHhhhhcCceee-------cCCcchhhHHHHHHHhhccCCCceeccccccc
Confidence 211 134666777766655332 112233477777776655 6899999999999
Q ss_pred HHHHHHHHHhcCchHHhhhhhhccCCCCHHHHHHHHHhCCCee
Q 045794 534 VEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 534 ~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~~~l~~~~i~v 576 (578)
..++.++++...+|.+.+--....|-.....+.+...+.+++|
T Consensus 123 ~~~~~~~i~~~a~d~~~~d~~~~GGit~~~kia~~A~~~~i~v 165 (252)
T d1yeya1 123 RVVFKQLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRV 165 (252)
T ss_dssp HHHHHHHHHHTCCSEECCCTTTSSHHHHHHHHHHHHHHHTCEE
T ss_pred hhhhhhHhhccccceeccccccccCchhhhHHHHHHHHcCCEE
Confidence 9999999975446666543333333334566777777777776
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=86.94 E-value=0.89 Score=42.99 Aligned_cols=83 Identities=22% Similarity=0.188 Sum_probs=64.0
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEecccCCCCC-CCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 306 LGKPVELARQYYKEGADEISFLNITGFRDFP-LGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~-~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
+.+|.+..+.+++.|+|.|-+ -+...-+.. .....+++.+++|.+.+++|+.+=||=...+ ++++++.
T Consensus 153 ~T~peea~~Fv~~TgvD~LAv-aiGt~HG~y~~~p~l~~~~L~~i~~~~~vPLVlHGgSG~~~----------e~i~~ai 221 (284)
T d1gvfa_ 153 LTDPQEAKRFVELTGVDSLAV-AIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPD----------EFVRRTI 221 (284)
T ss_dssp SCCHHHHHHHHHHHCCSEEEE-CSSCCSSCCSSCCCCCHHHHHHHHHHCCSCEEECCCTTCCH----------HHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCEEee-ecCceeeccCCCCccccchhhhhhccccCCeEeeCCCCCCH----------HHHHHHH
Confidence 479999999999999997664 332211111 1234678999999999999998888777654 5799999
Q ss_pred HcCcceeecchhhhc
Q 045794 385 RSGADKISIGSDAVY 399 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~ 399 (578)
+.|+.||-++|....
T Consensus 222 ~~Gi~KiNi~T~l~~ 236 (284)
T d1gvfa_ 222 ELGVTKVNVATELKI 236 (284)
T ss_dssp HTTEEEEEECHHHHH
T ss_pred HcCeEEEEechHHHH
Confidence 999999999998776
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=86.93 E-value=0.36 Score=48.18 Aligned_cols=52 Identities=10% Similarity=0.015 Sum_probs=39.9
Q ss_pred HHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHHHH
Q 045794 515 KLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVK 566 (578)
Q Consensus 515 ~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~~~ 566 (578)
+.+++.+++|||+.||+.+.+++.+.+.+.+||.|.+|+++...+.-...++
T Consensus 310 ~~ik~~~~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~l~~K~~ 361 (399)
T d1oyaa_ 310 DFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLE 361 (399)
T ss_dssp THHHHHCCSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHH
T ss_pred HHHHHHhCCCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHHHCccHHHHHH
Confidence 3466778999999999988777766665578999999999987765444433
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=86.79 E-value=3.2 Score=38.24 Aligned_cols=175 Identities=17% Similarity=0.115 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccCh--HHHHHHHHH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSS--LEVASEYFR 385 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~--~~~~~~~l~ 385 (578)
+..++++.-.++|+.-+.+- ....++.++..+..++.+ +.-| .|.. |..++. +..++..++
T Consensus 52 ~i~~lc~~A~~~~~aaVcV~------------P~~v~~a~~~L~gs~v~v--~tVi-gFP~--G~~~~~~K~~Ea~~Ai~ 114 (251)
T d1o0ya_ 52 DIKKLCLEARENRFHGVCVN------------PCYVKLAREELEGTDVKV--VTVV-GFPL--GANETRTKAHEAIFAVE 114 (251)
T ss_dssp HHHHHHHHHHHHTCSEEEEC------------GGGHHHHHHHHTTSCCEE--EEEE-STTT--CCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCceEEEEC------------HHHHHHHHHHhcCCCceE--Eeec-cCCC--CCCcHHHHHHHHHHHHH
Confidence 45556666667787766531 234666776665444444 2223 2332 433333 345788899
Q ss_pred cCcce--eecchhhhccc-hhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCc
Q 045794 386 SGADK--ISIGSDAVYAA-EDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEY 462 (578)
Q Consensus 386 ~Ga~~--vv~gt~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (578)
.||+- +|++-.++.+. -+.+. +.++++.+..+...+-+-|.. .
T Consensus 115 ~GAdEID~Vin~~~l~~g~~~~v~-------~ei~~v~~~~~~~~lKVIlEt--~------------------------- 160 (251)
T d1o0ya_ 115 SGADEIDMVINVGMLKAKEWEYVY-------EDIRSVVESVKGKVVKVIIET--C------------------------- 160 (251)
T ss_dssp HTCSEEEEECCHHHHHTTCHHHHH-------HHHHHHHHHTTTSEEEEECCG--G-------------------------
T ss_pred cCCceEEEEeccchhhcCCHHHHH-------HHHHHHHHHhcccceeeeecc--c-------------------------
Confidence 99985 45566666532 22221 445555555542222221110 0
Q ss_pred ceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCC-CCCCHHHHHHHHhhC--CCcEEEecCCCCHHHHHH
Q 045794 463 AWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQG-KGFDMDLIKLISDAV--SIPVIASSGAGAVEHFSD 539 (578)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~-~G~d~~li~~l~~~~--~ipVIasGGi~s~eDi~~ 539 (578)
..++-.....++.+.+.|++.|= |+ .|.. .|...+.++.+++.+ .+.|=++|||++.+++.+
T Consensus 161 -----------~L~~~e~~~a~~ia~~aGadfvK-TS---TGf~~~gat~e~V~~m~~~~~~~~giKasGGIrt~~~a~~ 225 (251)
T d1o0ya_ 161 -----------YLDTEEKIAACVISKLAGAHFVK-TS---TGFGTGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVK 225 (251)
T ss_dssp -----------GCCHHHHHHHHHHHHHTTCSEEE-CC---CSSSSCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHH
T ss_pred -----------ccCcHHHHHHHHHHHHhCcceee-cc---CCCCCCCcCHHHHHHHHHHhCCCceEeccCCcCCHHHHHH
Confidence 00112356788888999998543 44 3332 244566555555433 477889999999999999
Q ss_pred HHHhcCchHH
Q 045794 540 VFRKTNASAA 549 (578)
Q Consensus 540 l~~~~G~~gv 549 (578)
++. +|++-+
T Consensus 226 ~i~-aGa~ri 234 (251)
T d1o0ya_ 226 MIM-YGADRI 234 (251)
T ss_dssp HHH-TTCSEE
T ss_pred HHH-HhhHHh
Confidence 996 899853
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=86.69 E-value=2.4 Score=38.99 Aligned_cols=108 Identities=22% Similarity=0.300 Sum_probs=72.3
Q ss_pred hHHHHHHHHHcCcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccC
Q 045794 376 SLEVASEYFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDL 455 (578)
Q Consensus 376 ~~~~~~~~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~ 455 (578)
|++++....+.|||||=+.+..... |-+-++.+++.+.+... --|.+.|=.|.+...
T Consensus 9 s~~~a~~A~~~GAdRIELc~~l~~G-------GlTPS~g~i~~~~~~~~-iPv~vMIRPR~GdF~--------------- 65 (247)
T d1twda_ 9 SMECALTAQQNGADRVELCAAPKEG-------GLTPSLGVLKSVRQRVT-IPVHPIIRPRGGDFC--------------- 65 (247)
T ss_dssp SHHHHHHHHHTTCSEEEECBCGGGT-------CBCCCHHHHHHHHHHCC-SCEEEBCCSSSSCSC---------------
T ss_pred CHHHHHHHHHcCCCEEEEcCCcccC-------CCCCCHHHHHHHHHhcC-CCeEEEEecCCCCCC---------------
Confidence 4566999999999999998655442 33335678888877663 336665554443110
Q ss_pred CCCCCCcceEEEEEcccccCCCC-CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEE
Q 045794 456 GPNGEEYAWYQCTVNGGREGRPI-GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVI 526 (578)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~-~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVI 526 (578)
+ ....+ ...+-++.+.++|++.|++--++.||+ +|.+.++++.+.. +.|++
T Consensus 66 ------------Y-----s~~E~~~M~~di~~~k~~G~dGvV~G~L~~dg~---iD~~~~~~L~~~a~~l~vT 118 (247)
T d1twda_ 66 ------------Y-----SDGEFAAILEDVRTVRELGFPGLVTGVLDVDGN---VDMPRMEKIMAAAGPLAVT 118 (247)
T ss_dssp ------------C-----CHHHHHHHHHHHHHHHHTTCSEEEECCBCTTSS---BCHHHHHHHHHHHTTSEEE
T ss_pred ------------C-----CHHHHHHHHHHHHHHHHcCCCeEEEEEECCCCC---ccHHHHHHHHHHhcccCee
Confidence 0 00011 245678889999999999999988875 6888888886644 56653
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=86.61 E-value=3 Score=37.37 Aligned_cols=159 Identities=18% Similarity=0.260 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHH-----HH
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVA-----SE 382 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~-----~~ 382 (578)
.-..+|.+|...|- .+-++-.|-.+ ..-.+-++..++..++|+... .+.+| +..+ ..
T Consensus 27 TiAKLAa~~~~~~~-kV~lit~Dt~R------~gA~eQL~~~a~~l~i~~~~~---~~~~d--------~~~~~~~~~~~ 88 (213)
T d1vmaa2 27 SCGKLAKMFVDEGK-SVVLAAADTFR------AAAIEQLKIWGERVGATVISH---SEGAD--------PAAVAFDAVAH 88 (213)
T ss_dssp HHHHHHHHHHHTTC-CEEEEEECTTC------HHHHHHHHHHHHHHTCEEECC---STTCC--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-ceEEEeecccc------cchhHHHHHHhhhcCcccccc---CCCCc--------HHHHHHHHHHH
Confidence 45578888888884 58888888643 223455677777788999743 33333 1111 11
Q ss_pred HHHcCcceeecchhhhccchhhhhccccCCchHHHHHH---HhCC------CCeEEEEEeccccccCCCCccccceeeec
Q 045794 383 YFRSGADKISIGSDAVYAAEDYLKTGVKTGKSSLEQIS---RVYG------NQAVVVSIDPRRVYITHPNDVEFKAVRVT 453 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g------~~~iv~slD~~~~~~~~~~~~~~~~~~~~ 453 (578)
....+.|.|+|.|+-..... .++++++. +... +..+++.+|.-.+
T Consensus 89 ~~~~~~d~ilIDTaGr~~~d----------~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~---------------- 142 (213)
T d1vmaa2 89 ALARNKDVVIIDTAGRLHTK----------KNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG---------------- 142 (213)
T ss_dssp HHHTTCSEEEEEECCCCSCH----------HHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH----------------
T ss_pred HHHcCCCEEEEeccccccch----------HHHHHHHHHHHhhhhhccccccceeEEeeccccC----------------
Confidence 22348899999998765321 23344433 2221 3456677775432
Q ss_pred cCCCCCCCcceEEEEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCC
Q 045794 454 DLGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGA 533 (578)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s 533 (578)
.-+..+..+.+...+++.+|+|-+|...++ |. ++ .+...+++||.+-|.=..
T Consensus 143 -----------------------~~~~~~~~~~~~~~~~~~lI~TKlDe~~~~-G~---~l-~~~~~~~~Pi~~i~~Gq~ 194 (213)
T d1vmaa2 143 -----------------------QNGLVQAKIFKEAVNVTGIILTKLDGTAKG-GI---TL-AIARELGIPIKFIGVGEK 194 (213)
T ss_dssp -----------------------HHHHHHHHHHHHHSCCCEEEEECGGGCSCT-TH---HH-HHHHHHCCCEEEEECSSS
T ss_pred -----------------------cchhhhhhhhccccCCceEEEecccCCCcc-cH---HH-HHHHHHCCCEEEEeCCCC
Confidence 114567888899999999999998876443 32 22 233445789855543334
Q ss_pred HHHHH
Q 045794 534 VEHFS 538 (578)
Q Consensus 534 ~eDi~ 538 (578)
.+|+.
T Consensus 195 v~Dl~ 199 (213)
T d1vmaa2 195 AEDLR 199 (213)
T ss_dssp GGGEE
T ss_pred cccCc
Confidence 56654
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.50 E-value=1.2 Score=41.13 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=56.0
Q ss_pred cEEecCCHHHHHHHHHHcCCCeEEEE--ecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChH
Q 045794 302 EVRNLGKPVELARQYYKEGADEISFL--NITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSL 377 (578)
Q Consensus 302 ~~~~~~~p~~~a~~~~~~g~~~i~~~--Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~ 377 (578)
.+.+..+..|+-+.+ +.|++-|-|- ||... ..+++...++...+ +..+..=+||.+.+|
T Consensus 155 ~LvEvh~~~El~~a~-~~~a~iIGINnRnL~t~-------~vd~~~~~~L~~~ip~~~~~IaESGI~t~~d--------- 217 (247)
T d1a53a_ 155 PLIEINDENDLDIAL-RIGARFIGINSRDLETL-------EINKENQRKLISMIPSNVVKVAESGISERNE--------- 217 (247)
T ss_dssp CEEEECSHHHHHHHH-HTTCSEEEEESBCTTTC-------CBCHHHHHHHHHHSCTTSEEEEESCCCCHHH---------
T ss_pred HHhhcCCHHHHHHHH-hCCCCeEeeeccChhhh-------hhhhhHHHHHHhhCCCCCeEEEecCCCCHHH---------
Confidence 556667888866554 6889855543 23221 23345555555544 456667799999977
Q ss_pred HHHHHHHHcCcceeecchhhhcc
Q 045794 378 EVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 378 ~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
++++.++|++-+.||++.+++
T Consensus 218 --v~~l~~~G~davLIGeaLmk~ 238 (247)
T d1a53a_ 218 --IEELRKLGVNAFLIGSSLMRN 238 (247)
T ss_dssp --HHHHHHTTCCEEEECHHHHHC
T ss_pred --HHHHHHCCCCEEEECHHHcCC
Confidence 999999999999999999985
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=86.14 E-value=1.7 Score=35.05 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+..+....+.+.-.+ +++.|+.-- .+.| +++++++++.. .+|+|+-.+-.+.++..++++ .||++.+ .
T Consensus 32 ~g~eal~~l~~~~~d-liilD~~mP-~~~G--~e~~~~i~~~~~~~pvi~lt~~~~~~~~~~a~~-~Ga~~yl------~ 100 (119)
T d2pl1a1 32 DAKEADYYLNEHIPD-IAIVDLGLP-DEDG--LSLIRRWRSNDVSLPILVLTARESWQDKVEVLS-AGADDYV------T 100 (119)
T ss_dssp SHHHHHHHHHHSCCS-EEEECSCCS-SSCH--HHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHH-TTCSEEE------E
T ss_pred CHHHHHHHHHhcccc-eeehhccCC-Cchh--HHHHHHHHhcCcccceEeeeccCCHHHHHHHHH-cCCCEEE------E
Confidence 346667777777676 667887542 1223 68899997754 799999999999999999985 8998765 5
Q ss_pred CCCCHHHHHHHHH
Q 045794 558 KEVPIQSVKEHLY 570 (578)
Q Consensus 558 ~~~~~~~~~~~l~ 570 (578)
+++...++...++
T Consensus 101 KP~~~~~L~~~v~ 113 (119)
T d2pl1a1 101 KPFHIEEVMARMQ 113 (119)
T ss_dssp SSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 7788877776654
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.79 E-value=0.23 Score=43.66 Aligned_cols=67 Identities=19% Similarity=0.146 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHH----HHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKL----ISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~----l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
.+-+.++.+.|++.|.+-.. ..+.+++ +...- .+.+-+|||| +++.+.+.. ++|+|.+++|+..
T Consensus 88 ~~e~~~a~~~g~d~i~LDn~---------~pe~~k~~~~~lk~~~~~i~lEaSGGI-~~~ni~~~a-~~GVD~Is~g~lt 156 (170)
T d1o4ua1 88 LEDALRAVEAGADIVMLDNL---------SPEEVKDISRRIKDINPNVIVEVSGGI-TEENVSLYD-FETVDVISSSRLT 156 (170)
T ss_dssp HHHHHHHHHTTCSEEEEESC---------CHHHHHHHHHHHHHHCTTSEEEEEECC-CTTTGGGGC-CTTCCEEEEGGGT
T ss_pred HHHHHHHHhcCccEEEEcCc---------ChhhHhHHHHHHHhhCCcEEEEEECCC-CHHHHHHHH-HcCCCEEEcCccc
Confidence 56677788899997765433 3344443 33322 5778999999 779999887 4999999999888
Q ss_pred ccC
Q 045794 556 HRK 558 (578)
Q Consensus 556 ~~~ 558 (578)
|.-
T Consensus 157 ~~a 159 (170)
T d1o4ua1 157 LQE 159 (170)
T ss_dssp SSC
T ss_pred cCC
Confidence 853
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=85.32 E-value=0.24 Score=49.11 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=43.0
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCCCCHHH
Q 045794 511 MDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQS 564 (578)
Q Consensus 511 ~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~~~~~~ 564 (578)
.++.+.+++.+++||+++||+ +++...++++...||.|.+|+++...+.-...
T Consensus 296 ~~~~~~ik~~~~~pv~~~Gg~-~~~~ae~~l~~G~~DlV~~gR~liaDPdlv~K 348 (380)
T d1q45a_ 296 AKLMKSLRMAYNGTFMSSGGF-NKELGMQAVQQGDADLVSYGRLFIANPDLVSR 348 (380)
T ss_dssp HHHHHHHHHHSCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHH
T ss_pred HHHHHHHhhccCCcEEeCCCC-CHHHHHHHHHcCCccchhhhHHHHHCccHHHH
Confidence 356777888899999999998 68888888875569999999999877754433
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=85.26 E-value=0.26 Score=49.09 Aligned_cols=77 Identities=23% Similarity=0.198 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCC-----CCCchhHHHHHHHh---hhccccEEEeCCccccccCCCCccChHHHHHH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFP-----LGDLPMLQVLRLTS---ENVFVPLTVGGGIRDFTDANGRHYSSLEVASE 382 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~-----~~~~~~~~~i~~i~---~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~ 382 (578)
+.|+.+.+.|||-|- |-+-.-.-++ .-.-+.+..+.+.. ....+||+.+||||+.-| +-+
T Consensus 204 e~a~~L~~~GaD~Vk-VGiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gd-----------i~K 271 (388)
T d1eepa_ 204 EAALDLISVGADCLK-VGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGD-----------VVK 271 (388)
T ss_dssp HHHHHHHTTTCSEEE-ECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHH-----------HHH
T ss_pred HHHHHHHhcCCCeee-eccccccccccccccccCcchHHHHHHHHHHhccCCceEEeccccCcCCc-----------eee
Confidence 778889999999554 5443100000 00123455555444 345899999999999987 889
Q ss_pred HHHcCcceeecchhhhc
Q 045794 383 YFRSGADKISIGSDAVY 399 (578)
Q Consensus 383 ~l~~Ga~~vv~gt~~~~ 399 (578)
.|.+|||.|.+|+....
T Consensus 272 Ala~GAd~VMlG~~lAg 288 (388)
T d1eepa_ 272 AIAAGADSVMIGNLFAG 288 (388)
T ss_dssp HHHHTCSEEEECHHHHT
T ss_pred eEEeccceeecchhhhc
Confidence 99999999999997765
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=84.99 E-value=0.89 Score=42.75 Aligned_cols=91 Identities=16% Similarity=0.251 Sum_probs=66.5
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCCC--HHHHHHHHhhC--CCcEEEecCCCCHHHHHHH---HHhcCchHHhhh
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFD--MDLIKLISDAV--SIPVIASSGAGAVEHFSDV---FRKTNASAALAA 552 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d--~~li~~l~~~~--~ipVIasGGi~s~eDi~~l---~~~~G~~gv~vg 552 (578)
+...++.+.+.|++.+++..-+-++..-..+ .++++.+.+.+ ++|||++-|-.+.++..++ .++.|++++++.
T Consensus 26 ~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~ilv~ 105 (292)
T d1xkya1 26 TTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLV 105 (292)
T ss_dssp HHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCCEEEEC
Confidence 4578888889999999998887776555443 24566665544 5899999998888876555 334799999988
Q ss_pred hhhccCCCCHHHHHHHHHh
Q 045794 553 GIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 553 sa~~~~~~~~~~~~~~l~~ 571 (578)
--++.+ .+-+++.+|++.
T Consensus 106 pP~~~~-~s~~~i~~~~~~ 123 (292)
T d1xkya1 106 APYYNK-PSQEGMYQHFKA 123 (292)
T ss_dssp CCCSSC-CCHHHHHHHHHH
T ss_pred CCCCCC-CCHHHHHHHHHH
Confidence 766654 356777777653
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=84.93 E-value=1.1 Score=41.58 Aligned_cols=94 Identities=14% Similarity=0.077 Sum_probs=70.5
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhh-hhh
Q 045794 476 RPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALA-AGI 554 (578)
Q Consensus 476 ~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~v-gsa 554 (578)
.+.++.++++.++ .|+..|-+. .|..+-|=+++.++.+++.+++||+.-==|-++-.+.+... .|||+|++ .++
T Consensus 59 ~~~d~~~~a~~ye-~GA~aiSVL---Td~~~F~Gs~~~l~~vr~~~~~PiLrKDFIid~~QI~ea~~-~GADaiLLI~~~ 133 (251)
T d1i4na_ 59 ADASLEDFIRMYD-ELADAISIL---TEKHYFKGDPAFVRAARNLTCRPILAKDFYIDTVQVKLASS-VGADAILIIARI 133 (251)
T ss_dssp TTCCHHHHHHHHH-HHCSEEEEE---CCCSSSCCCTHHHHHHHTTCCSCEEEECCCCSTHHHHHHHH-TTCSEEEEEGGG
T ss_pred CCccHHHHHHHHh-cCCcceEEe---cccCCCCCCHHHHHHHhhcccCchhhhhhhhCHHHHHHHHh-hccceEEeeccc
Confidence 3678999999996 588877533 23444444678899999999999999999999999999975 99999754 444
Q ss_pred hccCCCCHHHHHHHHHhCCCee
Q 045794 555 FHRKEVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 555 ~~~~~~~~~~~~~~l~~~~i~v 576 (578)
+... .+.++.++.++-|+++
T Consensus 134 L~~~--~l~~l~~~a~~lgle~ 153 (251)
T d1i4na_ 134 LTAE--QIKEIYEAAEELGMDS 153 (251)
T ss_dssp SCHH--HHHHHHHHHHTTTCEE
T ss_pred ccHH--HHHHHHHHHHHhCCee
Confidence 4222 3677777777778765
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=84.70 E-value=1.1 Score=36.37 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 481 YELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 481 ~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
.+..+.+.+..++ ++++|+.--+ +. .+++++++++.. .+|||.-.+..+.++..++++ .|+++.+ .++
T Consensus 37 ~~a~~~l~~~~~d-lii~D~~mp~-~~--G~el~~~l~~~~~~~piI~~t~~~~~~~~~~a~~-~Ga~dyl------~KP 105 (123)
T d1krwa_ 37 NEVLAALASKTPD-VLLSDIRMPG-MD--GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQ-QGAFDYL------PKP 105 (123)
T ss_dssp HHHHHHHTTCCCS-EEEECCSSSS-ST--THHHHHHHHHHSSSCCEEESCCCSCHHHHHHHHH-HTEEEEC------SSC
T ss_pred HHHHHHHHhCCCC-EEEehhhcCC-ch--HHHHHHHHHHhCCCCeEEEEecCCCHHHHHHHHH-cCCCeEE------eCc
Confidence 5666667676665 6668865322 22 467888886644 789999999999999999986 7887654 567
Q ss_pred CCHHHHHHHHHh
Q 045794 560 VPIQSVKEHLYK 571 (578)
Q Consensus 560 ~~~~~~~~~l~~ 571 (578)
+...++...+.+
T Consensus 106 ~~~~eL~~~i~~ 117 (123)
T d1krwa_ 106 FDIDEAVALVER 117 (123)
T ss_dssp CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 777777766543
|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.58 E-value=0.74 Score=43.00 Aligned_cols=99 Identities=15% Similarity=0.206 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHc
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRS 386 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~ 386 (578)
...++.|+...+.||+ ++|++....+...-.....+++.+...+++|+.++ |+..+.++..|+.
T Consensus 40 d~~~~~A~~qv~~GA~---iLDIn~~~~~~~e~~~m~~li~~l~~~~d~PlsID-------------T~~~~v~eaaLk~ 103 (260)
T d3bofa1 40 EIVIKEAKTQVEKGAE---VLDVNFGIESQIDVRYVEKIVQTLPYVSNVPLSLD-------------IQNVDLTERALRA 103 (260)
T ss_dssp HHHHHHHHHHHHTTCS---EEEEECSSGGGSCHHHHHHHHHHHHHHTCSCEEEE-------------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC---EEEeecCCchhhhHHHHHHHHHHHHhcCCCCcccc-------------CCCHHHHHHHHHH
Confidence 4567789999999997 56776432222222456678888888889999863 4556789999988
Q ss_pred --CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEe
Q 045794 387 --GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSID 433 (578)
Q Consensus 387 --Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD 433 (578)
|+ .+|++..... .. .+.+-.++++||..-|+..+|
T Consensus 104 ~~G~--~iINsis~e~-~~---------~~~~~~l~~~yga~vI~l~~d 140 (260)
T d3bofa1 104 YPGR--SLFNSAKVDE-EE---------LEMKINLLKKYGGTLIVLLMG 140 (260)
T ss_dssp CSSC--CEEEEEESCH-HH---------HHHHHHHHHHHCCEEEEESCS
T ss_pred hcCc--ceEeeccccc-ch---------HHHHHHHHHhcCCCEEEEecC
Confidence 75 4777766652 11 144567889998654444333
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=84.52 E-value=1.2 Score=43.84 Aligned_cols=84 Identities=14% Similarity=0.044 Sum_probs=58.4
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChHHHHHHHHHcC-cc
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG-AD 389 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G-a~ 389 (578)
++++.+...|++.+|+-.-+-.... ... .....+.+++.+++||.+.|++ +.+ .++++++.| ||
T Consensus 256 ~~~~~ld~~~i~~~~~~~~~~~~~~-~~~--~~~~~~~i~~~~~~pvi~~G~i-~~~-----------~ae~~l~~g~aD 320 (374)
T d1gwja_ 256 YLAGELDRRGLAYLHFNEPDWIGGD-ITY--PEGFREQMRQRFKGGLIYCGNY-DAG-----------RAQARLDDNTAD 320 (374)
T ss_dssp HHHHHHHHHTCSEEEEECSCBTTBC-CCC--CTTHHHHHHHHCCSEEEEESSC-CHH-----------HHHHHHHTTSCS
T ss_pred HhhccccccCceEEEeccCcccCCC-cch--hHHHHHHHHHHcCCCEEEECCc-CHH-----------HHHHHHHcCCCc
Confidence 3466667789999987654422111 111 1234566777889999999998 443 488889887 99
Q ss_pred eeecchhhhccchhhhhccccCCchHHHHHHH
Q 045794 390 KISIGSDAVYAAEDYLKTGVKTGKSSLEQISR 421 (578)
Q Consensus 390 ~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~ 421 (578)
-|.+|-.++.| |++.+++.+
T Consensus 321 lV~~gR~~iad------------Pd~~~K~~~ 340 (374)
T d1gwja_ 321 AVAFGRPFIAN------------PDLPERFRL 340 (374)
T ss_dssp EEEESHHHHHC------------TTHHHHHHH
T ss_pred EehhhHHHHHC------------ccHHHHHHc
Confidence 99999999985 466677765
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=84.50 E-value=2.1 Score=34.45 Aligned_cols=82 Identities=16% Similarity=0.252 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+..+..+.+.+..++ ++++|+.--|+ .| +++++++++.. .+|||+--+-.+.++..++.+ .|+++.+ .
T Consensus 33 ~g~eal~~~~~~~~d-lillD~~mP~~-~G--~el~~~lr~~~~~~pvi~lt~~~~~~~~~~a~~-~Ga~~yl------~ 101 (119)
T d1peya_ 33 NGLQALDIVTKERPD-LVLLDMKIPGM-DG--IEILKRMKVIDENIRVIIMTAYGELDMIQESKE-LGALTHF------A 101 (119)
T ss_dssp SHHHHHHHHHHHCCS-EEEEESCCTTC-CH--HHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHH-TTCCEEE------E
T ss_pred CHHHHHHHHHhCCCC-EEEEeccCCCC-CH--HHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHH-CCCCEEE------E
Confidence 345666777777676 66678765432 22 68888887644 689999988999999999885 8888654 5
Q ss_pred CCCCHHHHHHHHHh
Q 045794 558 KEVPIQSVKEHLYK 571 (578)
Q Consensus 558 ~~~~~~~~~~~l~~ 571 (578)
++++..++.+.+++
T Consensus 102 KP~~~~~L~~~v~~ 115 (119)
T d1peya_ 102 KPFDIDEIRDAVKK 115 (119)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 78889888887764
|
| >d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein KdpE, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.48 E-value=1.3 Score=35.80 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=59.4
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccCC
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKE 559 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~~ 559 (578)
..+..+.+.+.-++ ++++|+.--+ +.| +++++++++...+|+|+--+-.+.++..++++ .||+..+ .++
T Consensus 33 ~~eal~~l~~~~~d-liilD~~mP~-~~G--~e~~~~ir~~~~~piI~lt~~~~~~~~~~a~~-~Ga~dyl------~KP 101 (119)
T d1zh2a1 33 LQRGLLEAATRKPD-LIILDLGLPD-GDG--IEFIRDLRQWSAVPVIVLSARSEESDKIAALD-AGADDYL------SKP 101 (119)
T ss_dssp HHHHHHHHHHHCCS-EEEEESEETT-EEH--HHHHHHHHTTCCCCEEEEESCCSHHHHHHHHH-HTCSEEE------ESS
T ss_pred HHHHHHHHHhcCCC-EEEeccccCC-CCC--chHHHHHHhccCCcEEEEeccCCHHHHHHHHH-cCCCEEE------ECC
Confidence 45666677777776 6678875432 222 68999998888899999999999999999885 8888665 567
Q ss_pred CCHHHHHHHHH
Q 045794 560 VPIQSVKEHLY 570 (578)
Q Consensus 560 ~~~~~~~~~l~ 570 (578)
+...++...++
T Consensus 102 ~~~~~L~~~i~ 112 (119)
T d1zh2a1 102 FGIGELQARLR 112 (119)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 77777766554
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=84.33 E-value=0.85 Score=42.96 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCCC--HHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHH---hcCchHHhhh
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFD--MDLIKLISDAV--SIPVIASSGAGAVEHFSDVFR---KTNASAALAA 552 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d--~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~---~~G~~gv~vg 552 (578)
+.+.++.+.+.|++.|++...+-++..--.+ .++++.+.+.. .+|||++-|-.+.++..++.+ +.|++++++.
T Consensus 24 ~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad~v~v~ 103 (295)
T d1o5ka_ 24 YERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVV 103 (295)
T ss_dssp HHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCCEEEEe
Confidence 4577888889999999998877665443332 13444444444 589999999889888665543 3699999987
Q ss_pred hhhccCCCCHHHHHHHHHh
Q 045794 553 GIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 553 sa~~~~~~~~~~~~~~l~~ 571 (578)
--+|.. .+-+++.+|++.
T Consensus 104 pP~y~~-~s~~~i~~~~~~ 121 (295)
T d1o5ka_ 104 TPYYNK-PTQEGLYQHYKY 121 (295)
T ss_dssp CCCSSC-CCHHHHHHHHHH
T ss_pred CCCCCC-CCHHHHHHHHHH
Confidence 776654 467778777764
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=84.19 E-value=13 Score=32.80 Aligned_cols=167 Identities=13% Similarity=0.109 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhccccEEEeCCccccccCCCCccChH-HHHHHHHHc
Q 045794 308 KPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTDANGRHYSSL-EVASEYFRS 386 (578)
Q Consensus 308 ~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d~~~~~~~~~-~~~~~~l~~ 386 (578)
.-..+|.+|.+.|. .+-++-+|-.+ ..-.+-++..++..++|+.. +.+.+|. ...+ +.++.....
T Consensus 28 TiAKLA~~~~~~g~-kV~lit~Dt~R------~ga~eQL~~~a~~l~v~~~~---~~~~~~~----~~~~~~a~~~~~~~ 93 (211)
T d1j8yf2 28 TAGKLAYFYKKKGF-KVGLVGADVYR------PAALEQLQQLGQQIGVPVYG---EPGEKDV----VGIAKRGVEKFLSE 93 (211)
T ss_dssp HHHHHHHHHHHTTC-CEEEEECCCSS------HHHHHHHHHHHHHHTCCEEC---CTTCCCH----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCC-ceEEEEeeccc------cchhHHHHHhccccCcceee---cccchhh----hHHHHHHHHHhhcc
Confidence 55678888888876 48899888653 22356667777778899984 4444330 0000 112233456
Q ss_pred CcceeecchhhhccchhhhhccccCCchHHHHHHHhCCCCeEEEEEeccccccCCCCccccceeeeccCCCCCCCcceEE
Q 045794 387 GADKISIGSDAVYAAEDYLKTGVKTGKSSLEQISRVYGNQAVVVSIDPRRVYITHPNDVEFKAVRVTDLGPNGEEYAWYQ 466 (578)
Q Consensus 387 Ga~~vv~gt~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~iv~slD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (578)
+.|.|.|+|+-.....+.. ...+.+.++.+...+..+.+.+|.-.+.
T Consensus 94 ~~d~IlIDTaGr~~~~~~~-----~~~~el~~~~~~~~~~~~~LVl~a~~~~---------------------------- 140 (211)
T d1j8yf2 94 KMEIIIVDTAGRHGYGEEA-----ALLEEMKNIYEAIKPDEVTLVIDASIGQ---------------------------- 140 (211)
T ss_dssp TCSEEEEECCCSCCTTCHH-----HHHHHHHHHHHHHCCSEEEEEEEGGGGG----------------------------
T ss_pred CCceEEEecCCcCccchhh-----HHHHHHHHHHhhcCCceEEEEEecccCc----------------------------
Confidence 8999999988753110000 0013345555666666778878754321
Q ss_pred EEEcccccCCCCCHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 045794 467 CTVNGGREGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHF 537 (578)
Q Consensus 467 ~~~~g~~~~~~~~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi 537 (578)
-...+....+...+++.+|+|-+|..... ..+-.+....++||.+-|.=...+|+
T Consensus 141 -----------~~~~~~~~~~~~~~~~~lI~TKlDet~~~-----G~~l~~~~~~~lPi~~it~Gq~v~DL 195 (211)
T d1j8yf2 141 -----------KAYDLASKFNQASKIGTIIITKMDGTAKG-----GGALSAVAATGATIKFIGTGEKIDEL 195 (211)
T ss_dssp -----------GHHHHHHHHHHHCTTEEEEEECTTSCSCH-----HHHHHHHHTTTCCEEEEECSSSTTCE
T ss_pred -----------chHHHHhhhhcccCcceEEEecccCCCcc-----cHHHHHHHHHCcCEEEEeCCCCcccC
Confidence 13467777888899999999998876442 23334455678898554432233443
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=83.87 E-value=1.8 Score=39.51 Aligned_cols=64 Identities=19% Similarity=0.088 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCC-CCCCHHHHHHH---HhhCCCcEEEecCCCCHHHHHHHHHhcCchH
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQG-KGFDMDLIKLI---SDAVSIPVIASSGAGAVEHFSDVFRKTNASA 548 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~-~G~d~~li~~l---~~~~~ipVIasGGi~s~eDi~~l~~~~G~~g 548 (578)
+...++.+.+.|++.|= |+ .|.. .|-..+.+..+ .....++|=++|||++.+|..++++ +|++-
T Consensus 150 i~~a~~~a~~aGadFVK-TS---TG~~~~gat~~~~~~l~~~~~~~~vgIKasGGIrt~~~a~~~i~-aGa~r 217 (234)
T d1n7ka_ 150 LSLLVDSSRRAGADIVK-TS---TGVYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVG-AGADI 217 (234)
T ss_dssp HHHHHHHHHHTTCSEEE-SC---CSSSCCCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHH-TTCSE
T ss_pred HHHHHHHHHHhhhhhee-ec---ccccCCCCCHHHHHHHHHHhcCCCCcEEeeCCcCCHHHHHHHHH-ccCce
Confidence 56677778899998654 44 3432 23333333333 3333688999999999999999996 89884
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=83.52 E-value=1.3 Score=38.41 Aligned_cols=68 Identities=26% Similarity=0.353 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc--cccEEEeCCccccccCCCCccChHHHHHHHH
Q 045794 307 GKPVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV--FVPLTVGGGIRDFTDANGRHYSSLEVASEYF 384 (578)
Q Consensus 307 ~~p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l 384 (578)
.+. +.++...+.|+|.|. ||.. . .+.+++..+.. .+.+++.|||.- +.+++|-
T Consensus 87 ~~~-~~~~~a~~~g~diIm---LDN~-----~----pe~~~~av~~i~~~~~lEaSGgI~~------------~ni~~ya 141 (167)
T d1qapa1 87 ENL-DELDDALKAGADIIM---LDNF-----N----TDQMREAVKRVNGQARLEVSGNVTA------------ETLREFA 141 (167)
T ss_dssp SSH-HHHHHHHHTTCSEEE---ESSC-----C----HHHHHHHHHTTCTTCCEEECCCSCH------------HHHHHHH
T ss_pred CcH-HHHHHHHhcCCcEEE---ecCC-----C----HHHHHHHHHhcCCceEEEEeCCCCH------------HHHHHHH
Confidence 444 445666678999655 4442 1 23333333333 578999999987 5699999
Q ss_pred HcCcceeecchhhhc
Q 045794 385 RSGADKISIGSDAVY 399 (578)
Q Consensus 385 ~~Ga~~vv~gt~~~~ 399 (578)
..|+|.|++|+....
T Consensus 142 ~~GVD~IS~galt~~ 156 (167)
T d1qapa1 142 ETGVDFISVGALTKH 156 (167)
T ss_dssp HTTCSEEECSHHHHE
T ss_pred HcCCCEEECCcccCC
Confidence 999999999987654
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=83.50 E-value=5.1 Score=32.71 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCC-CHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGF-DMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~-d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
..+..+.+.+..++ ++++|+.-- |. .+++++++++.. ..|+++--+-.+.+++.++++ .||++.+ .
T Consensus 37 ~~~al~~~~~~~~D-lvllD~~mP----~~~G~el~~~ir~~~~~~~vivlt~~~~~~~~~~a~~-~Ga~~yl------~ 104 (138)
T d1a04a2 37 GEQGIELAESLDPD-LILLDLNMP----GMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALK-RGADGYL------L 104 (138)
T ss_dssp HHHHHHHHHHHCCS-EEEEETTST----TSCHHHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHH-TTCSEEE------E
T ss_pred HHHHHHHHHhcCCC-EEEEecCCC----CCCHHHHHHHHHhhCCCCCEEEEEEECCHHHHHHHHH-cCCCEEE------E
Confidence 35566666666676 667887543 33 378999998754 688888888889999999986 8988765 5
Q ss_pred CCCCHHHHHHHHHh
Q 045794 558 KEVPIQSVKEHLYK 571 (578)
Q Consensus 558 ~~~~~~~~~~~l~~ 571 (578)
+++..+++.+.+.+
T Consensus 105 Kp~~~~~L~~~i~~ 118 (138)
T d1a04a2 105 KDMEPEDLLKALHQ 118 (138)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 67777777776653
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.31 E-value=1.2 Score=41.88 Aligned_cols=91 Identities=20% Similarity=0.283 Sum_probs=64.8
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCCCCCC--HHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHH---hcCchHHhhh
Q 045794 480 AYELAKAVEDLGAGEILLNCIDCDGQGKGFD--MDLIKLISDAV--SIPVIASSGAGAVEHFSDVFR---KTNASAALAA 552 (578)
Q Consensus 480 ~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d--~~li~~l~~~~--~ipVIasGGi~s~eDi~~l~~---~~G~~gv~vg 552 (578)
+...++.+.+.|++.+++...+-++..--.+ .++++.+.+.+ .+|++++-|-.+.++..++.+ +.|++++++.
T Consensus 30 l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~i~ 109 (296)
T d1xxxa1 30 AARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVV 109 (296)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCCeEEEE
Confidence 4567888889999999998876665433332 23455554444 589999998888887666543 3699999988
Q ss_pred hhhccCCCCHHHHHHHHHh
Q 045794 553 GIFHRKEVPIQSVKEHLYK 571 (578)
Q Consensus 553 sa~~~~~~~~~~~~~~l~~ 571 (578)
.-++.. .+-+++.++++.
T Consensus 110 ~P~~~~-~~~~~l~~~~~~ 127 (296)
T d1xxxa1 110 TPYYSK-PPQRGLQAHFTA 127 (296)
T ss_dssp CCCSSC-CCHHHHHHHHHH
T ss_pred eccCCC-CCHHHHHHHHHH
Confidence 887765 467777777654
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.42 E-value=0.43 Score=47.07 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=39.4
Q ss_pred hhHHHHHHHhh---hccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhc
Q 045794 341 PMLQVLRLTSE---NVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 341 ~~~~~i~~i~~---~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
+.+..|.+..+ ..++||+.+|||++..| +-+.|.+|||.|.+|+.+-.
T Consensus 200 Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gd-----------i~KAla~GAd~VMlG~~lAg 250 (368)
T d2cu0a1 200 PQITAVAMVADRAQEYGLYVIADGGIRYSGD-----------IVKAIAAGADAVMLGNLLAG 250 (368)
T ss_dssp CHHHHHHHHHHHHHHHTCEEEEESCCCSHHH-----------HHHHHHTTCSEEEESTTTTT
T ss_pred chHHHHHHHHHHHhccCCeeEecCCCCcCCh-----------hheeeeeccceeeccchhcc
Confidence 45666666653 45799999999999977 88999999999999997665
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.33 E-value=1.5 Score=38.04 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhhhc-cccEEEeCCccccccCCCCccChHHHHHHHHHcC
Q 045794 309 PVELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSENV-FVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSG 387 (578)
Q Consensus 309 p~~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~G 387 (578)
-++.++...+.|+|.|. ||.. .....-+.++.+.... .+.+++.|||.- + .+++|...|
T Consensus 88 s~~q~~~a~~~~~diIm---LDN~-----sp~~~k~~v~~~~~~~~~i~lEaSGgI~~-~-----------ni~~ya~~G 147 (169)
T d1qpoa1 88 SLEQLDAVLPEKPELIL---LDNF-----AVWQTQTAVQRRDSRAPTVMLESSGGLSL-Q-----------TAATYAETG 147 (169)
T ss_dssp SHHHHHHHGGGCCSEEE---EETC-----CHHHHHHHHHHHHHHCTTCEEEEESSCCT-T-----------THHHHHHTT
T ss_pred cHHHhhhhhhcCCcEEE---ecCc-----ChHhHHHHHHHhhccCCeeEEEEeCCCCH-H-----------HHHHHHHcC
Confidence 34666777788999665 3332 1012223344433322 467999999965 3 399999999
Q ss_pred cceeecchhhhc
Q 045794 388 ADKISIGSDAVY 399 (578)
Q Consensus 388 a~~vv~gt~~~~ 399 (578)
+|.|++|+....
T Consensus 148 vD~IS~galt~s 159 (169)
T d1qpoa1 148 VDYLAVGALTHS 159 (169)
T ss_dssp CSEEECGGGTSS
T ss_pred CCEEECCccccC
Confidence 999999986654
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Probab=82.20 E-value=0.7 Score=38.64 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+..+....+.+.-++ ++++|+.--+ +.| +++++++++.. ++|||+-.|-.+.++..++++ .||+..+ .
T Consensus 32 ~~~~al~~l~~~~~d-lil~D~~mP~-~~G--~el~~~lr~~~~~~pvI~lT~~~~~~~~~~a~~-~Ga~dyl------~ 100 (140)
T d1qkka_ 32 SATEALAGLSADFAG-IVISDIRMPG-MDG--LALFRKILALDPDLPMILVTGHGDIPMAVQAIQ-DGAYDFI------A 100 (140)
T ss_dssp CHHHHHHTCCTTCCS-EEEEESCCSS-SCH--HHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHH-TTCCEEE------E
T ss_pred ChHHHHHHHhccCcc-hHHHhhccCC-CCH--HHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHH-cCCCEee------c
Confidence 456677777776676 6778876442 333 47788887644 799999999999999999996 8888765 4
Q ss_pred CCCCHHHHHHHHH
Q 045794 558 KEVPIQSVKEHLY 570 (578)
Q Consensus 558 ~~~~~~~~~~~l~ 570 (578)
+++...++...++
T Consensus 101 KP~~~~~L~~~i~ 113 (140)
T d1qkka_ 101 KPFAADRLVQSAR 113 (140)
T ss_dssp SSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 6677766655543
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.13 E-value=0.92 Score=41.39 Aligned_cols=47 Identities=28% Similarity=0.352 Sum_probs=39.6
Q ss_pred HHHHHHHhh--hccccEEEeCCccccccCCCCccChHHHHHHHHHcCcceeecchhhhcc
Q 045794 343 LQVLRLTSE--NVFVPLTVGGGIRDFTDANGRHYSSLEVASEYFRSGADKISIGSDAVYA 400 (578)
Q Consensus 343 ~~~i~~i~~--~~~~pi~~gGGir~~~d~~~~~~~~~~~~~~~l~~Ga~~vv~gt~~~~~ 400 (578)
.+++.++.+ +..+|+.+.|||.+..| +....++|+|-|.+||..++.
T Consensus 176 ~~l~~~v~~~g~l~v~~~~~~Gi~tpad-----------aa~~MelG~dgV~v~s~I~~s 224 (254)
T d1znna1 176 VEVLREIKRLGRLPVVNFAAGGVTTPAD-----------AALMMHLGADGVFVGSGIFKS 224 (254)
T ss_dssp HHHHHHHHHHTSCSSEEEEESSCCSHHH-----------HHHHHHTTCSEEEECGGGGGS
T ss_pred hHHHHHHHHhCCCCceEEecCCCCChhh-----------HHHHHHcCCCEEEEcchhhcC
Confidence 456666665 46789999999999987 889999999999999988874
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=81.95 E-value=2.1 Score=40.70 Aligned_cols=93 Identities=19% Similarity=0.083 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEecc---cCCCCCCCCchhHHHHHHHhhhccccEEEeCCcccccc-----------CCC
Q 045794 306 LGKPVELARQYYKEGADEISFLNIT---GFRDFPLGDLPMLQVLRLTSENVFVPLTVGGGIRDFTD-----------ANG 371 (578)
Q Consensus 306 ~~~p~~~a~~~~~~g~~~i~~~Dl~---~~~~~~~~~~~~~~~i~~i~~~~~~pi~~gGGir~~~d-----------~~~ 371 (578)
+.+|.+..+...+.|+|.|-+ -+. +.-.+..+...+++.+++|.+.+++|+.+=||=.-..+ .-|
T Consensus 152 ~T~peea~~Fv~~TgvD~LAv-aiGn~HG~Yk~~~~~~l~~~~l~~I~~~~~~PLVlHGgS~vp~~~~~~~~~~g~~lhg 230 (305)
T d1rvga_ 152 LTNPEEARIFMERTGADYLAV-AIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEIGE 230 (305)
T ss_dssp CCCHHHHHHHHHHHCCSEEEE-CSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCCCCS
T ss_pred cCCHHHHHHHHHHhCccHhhh-hhhhhhcccCCCCcccchHHHHHHHHhccCCCeeccCCccccHHHHhhhcccCcccCC
Confidence 469988887777889996654 332 22111112236789999999999999988775310000 000
Q ss_pred CccChHHHHHHHHHcCcceeecchhhhc
Q 045794 372 RHYSSLEVASEYFRSGADKISIGSDAVY 399 (578)
Q Consensus 372 ~~~~~~~~~~~~l~~Ga~~vv~gt~~~~ 399 (578)
..--+-+++++..+.|+.||-++|....
T Consensus 231 ~sG~~~e~i~~ai~~GV~KiNi~T~l~~ 258 (305)
T d1rvga_ 231 AAGIHPEDIKKAISLGIAKINTDTDLRL 258 (305)
T ss_dssp CBCCCHHHHHHHHHTTEEEEEECHHHHH
T ss_pred CCCCCHHHHHHHHHcCeEEEEeChHHHH
Confidence 0011126799999999999999998776
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=81.48 E-value=2.2 Score=39.83 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCC-CCCCCCHHHHHHHHhhCCCcEEE------ecCCCCHHHHHHHHHhcCch
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDG-QGKGFDMDLIKLISDAVSIPVIA------SSGAGAVEHFSDVFRKTNAS 547 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG-~~~G~d~~li~~l~~~~~ipVIa------sGGi~s~eDi~~l~~~~G~~ 547 (578)
+.++.++.+++.|++.++++.----. +..+. ++.++++++++++|+++ .|---+++.+.++.+..++-
T Consensus 86 ~~i~~a~~a~~~Gad~ilv~pP~~~~~s~~~i-~~~~~~v~~~~~~pi~iYn~P~~~~~~~~~~~~~~l~~~p~v~ 160 (292)
T d1xkya1 86 ASIDLTKKATEVGVDAVMLVAPYYNKPSQEGM-YQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIV 160 (292)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHH-HHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCCHHHH-HHHHHHHhccCCCcEEEEeCCcccCCccCHHHHhhhccCCCEE
Confidence 46789999999999999987432111 11111 45677788888999977 34446788888876533433
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=81.22 E-value=2.2 Score=34.54 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhcc
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAV-SIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHR 557 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~-~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~ 557 (578)
+..+..+.+.+..+ .++++|+.--++ . .+++++++++.. .+|+|+-.|-++.+...++++ .|++..+ .
T Consensus 35 ~~~~al~~~~~~~~-dlvi~D~~mp~~-~--G~e~~~~lr~~~~~~~iI~lt~~~~~~~~~~a~~-~Ga~~yl------~ 103 (123)
T d1dbwa_ 35 SAEAFLAFAPDVRN-GVLVTDLRMPDM-S--GVELLRNLGDLKINIPSIVITGHGDVPMAVEAMK-AGAVDFI------E 103 (123)
T ss_dssp CHHHHHHHGGGCCS-EEEEEECCSTTS-C--HHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHH-TTCSEEE------E
T ss_pred CHHHHHHHHhhcCC-cEEEEeccCccc-c--chHHHHHHHhcCCCCeEEEEEeeCCHHHHHHHHH-CCCCEEE------E
Confidence 34566666666655 577899865432 2 357888887644 799999999999999999986 8888655 5
Q ss_pred CCCCHHHHHHHHHh
Q 045794 558 KEVPIQSVKEHLYK 571 (578)
Q Consensus 558 ~~~~~~~~~~~l~~ 571 (578)
++++..++.+.+++
T Consensus 104 KP~~~~~L~~~i~~ 117 (123)
T d1dbwa_ 104 KPFEDTVIIEAIER 117 (123)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 78888888777654
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=80.66 E-value=2.2 Score=38.36 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhhccC
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRK 558 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~~~~ 558 (578)
+..++++.+.+.|+..|=+|-.+.. -++.++++++..+-=++..|.|.+.++++++.+ .|++-++ .
T Consensus 28 ~a~~~~~al~~~Gi~~iEitl~tp~------a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~-aGa~Fiv-------S 93 (213)
T d1wbha1 28 HAVPMAKALVAGGVRVLNVTLRTEC------AVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTE-AGAQFAI-------S 93 (213)
T ss_dssp GHHHHHHHHHHTTCCEEEEESCSTT------HHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHH-HTCSCEE-------E
T ss_pred HHHHHHHHHHHCCCCEEEEeCCChh------HHHHHHHHHHHCCCCeeeccccccHHHHHHHHH-CCCcEEE-------C
Confidence 4689999999999998877765422 368999998876445799999999999999986 8988765 2
Q ss_pred CCCHHHHHHHHHhCCCee
Q 045794 559 EVPIQSVKEHLYKEGIEV 576 (578)
Q Consensus 559 ~~~~~~~~~~l~~~~i~v 576 (578)
+..-.++.+++++.++++
T Consensus 94 P~~~~~v~~~a~~~~i~~ 111 (213)
T d1wbha1 94 PGLTEPLLKAATEGTIPL 111 (213)
T ss_dssp SSCCHHHHHHHHHSSSCE
T ss_pred CCCCHHHHHHHHhcCCCc
Confidence 233456888888888764
|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Sinorhizobium meliloti, CheY2 [TaxId: 382]
Probab=80.65 E-value=4 Score=33.07 Aligned_cols=82 Identities=11% Similarity=0.112 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCCCCCCHHHHHHHHhh---CCCcEEEecCCCCHHHHHHHHHhcCchHHhhhhhh
Q 045794 479 GAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDA---VSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIF 555 (578)
Q Consensus 479 ~~~e~~~~~~~~G~~~ii~tdi~~dG~~~G~d~~li~~l~~~---~~ipVIasGGi~s~eDi~~l~~~~G~~gv~vgsa~ 555 (578)
+..+..+.+.+...+ ++++|+.--+ +. .+++++++++. ..+|+|+--+-.+.++..++++ .|+++.+
T Consensus 39 ~~~~al~~l~~~~~d-lii~D~~mP~-~~--G~el~~~lr~~~~~~~~pii~lt~~~~~~~~~~a~~-~G~~~~l----- 108 (129)
T d1p6qa_ 39 DGEQGMKIMAQNPHH-LVISDFNMPK-MD--GLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAA-LGANNVL----- 108 (129)
T ss_dssp SHHHHHHHHHTSCCS-EEEECSSSCS-SC--HHHHHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHH-HTCSCEE-----
T ss_pred CHHHHHHHHHhCCCC-eEEeeeecCC-CC--hHHHHHHHHhCcccCCCeEEEEEecCCHHHHHHHHH-CCCCEEE-----
Confidence 345666677776666 6678875432 22 36888888763 2689988888889999999985 8888654
Q ss_pred ccCCCCHHHHHHHHHh
Q 045794 556 HRKEVPIQSVKEHLYK 571 (578)
Q Consensus 556 ~~~~~~~~~~~~~l~~ 571 (578)
.++++..++.+.+++
T Consensus 109 -~KP~~~~~L~~~i~~ 123 (129)
T d1p6qa_ 109 -AKPFTIEKMKAAIEA 123 (129)
T ss_dssp -CCCSSHHHHHHHHHH
T ss_pred -ECCCCHHHHHHHHHH
Confidence 688888888877653
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.61 E-value=1.3 Score=44.08 Aligned_cols=76 Identities=24% Similarity=0.221 Sum_probs=53.2
Q ss_pred HHHHHHHHcCCCeEEEEecccCCCCCCCCchhHHHHHHHhh-----hc--cccEEEeCCccccccCCCCccChHHHHHHH
Q 045794 311 ELARQYYKEGADEISFLNITGFRDFPLGDLPMLQVLRLTSE-----NV--FVPLTVGGGIRDFTDANGRHYSSLEVASEY 383 (578)
Q Consensus 311 ~~a~~~~~~g~~~i~~~Dl~~~~~~~~~~~~~~~~i~~i~~-----~~--~~pi~~gGGir~~~d~~~~~~~~~~~~~~~ 383 (578)
+-|....+.|++.+.+.+-.+..-. ........+..+.+ .+ .+||.+.||||+=-| +-+.
T Consensus 258 ~da~~~~~~G~~~i~vsnhggr~~d--~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~D-----------VaKA 324 (414)
T d1kbia1 258 EDVIKAAEIGVSGVVLSNHGGRQLD--FSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTD-----------VLKA 324 (414)
T ss_dssp HHHHHHHHTTCSEEEECCTTTTSST--TCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHH-----------HHHH
T ss_pred HHHHHHHhcCCcceeeccccccccc--cccccccchhhhhhhhhhhccCCceeEEecCCcCcHHH-----------HHHH
Confidence 4566677899999998877653211 11223344444332 12 589999999999877 8888
Q ss_pred HHcCcceeecchhhhc
Q 045794 384 FRSGADKISIGSDAVY 399 (578)
Q Consensus 384 l~~Ga~~vv~gt~~~~ 399 (578)
+.+||+-|-+|...+.
T Consensus 325 LALGAdaVgigrp~L~ 340 (414)
T d1kbia1 325 LCLGAKGVGLGRPFLY 340 (414)
T ss_dssp HHHTCSEEEECHHHHH
T ss_pred HHcCCCEEEEcHHHHH
Confidence 9999999999876664
|