Citrus Sinensis ID: 045820
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 225 | 2.2.26 [Sep-21-2011] | |||||||
| Q9T0D6 | 566 | Pentatricopeptide repeat- | yes | no | 0.52 | 0.206 | 0.343 | 2e-15 | |
| Q9SUD8 | 704 | Pentatricopeptide repeat- | no | no | 0.702 | 0.224 | 0.267 | 1e-14 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.52 | 0.160 | 0.358 | 8e-14 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.573 | 0.172 | 0.294 | 1e-13 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.848 | 0.174 | 0.276 | 2e-13 | |
| Q9FNL2 | 472 | Pentatricopeptide repeat- | no | no | 0.724 | 0.345 | 0.276 | 2e-12 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.528 | 0.157 | 0.326 | 2e-12 | |
| Q9FMD3 | 504 | Pentatricopeptide repeat- | no | no | 0.542 | 0.242 | 0.309 | 3e-12 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.533 | 0.131 | 0.313 | 6e-12 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.751 | 0.282 | 0.243 | 9e-12 |
| >sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ +EM ++ DG+ P++YTY +M+ CK GR+ +A ++ +E ERGV+ N+VT
Sbjct: 247 GVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTY 306
Query: 162 IQLLQRL--EM---------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM G P IT+N +I CGVGK+ KAL L +
Sbjct: 307 NTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKS 366
Query: 205 HGKIPSRTSHDMLI 218
G PS ++++L+
Sbjct: 367 RGLSPSLVTYNILV 380
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010 OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+ L++ +++ N +K G +WS+ + L+ A G+++EA
Sbjct: 188 CEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCK----------------AGKMDEA 231
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ- 166
L +K GL+ D+ YT+++ GFC G + L +E +ERG + +T L++
Sbjct: 232 MGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRG 291
Query: 167 ----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+E G P T+ +I LCGVGK +AL LL LM E + P+
Sbjct: 292 FCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPN 351
Query: 211 RTSHDMLIKKL 221
+++++I KL
Sbjct: 352 AVTYNIIINKL 362
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V A E+L +++N G KP+VY+YT ++DGFCK+G+ +EA +LNE G+ N V
Sbjct: 403 GLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGF 462
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EM G P TFN++I LC V +I AL LL M
Sbjct: 463 NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 522
Query: 205 HGKIPSRTSHDMLI 218
G + + +++ LI
Sbjct: 523 EGVVANTVTYNTLI 536
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 17/146 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ H + G++E+A +L ++K GL PDV +Y+ ++ GFC+ +EA+ + E +E+G+
Sbjct: 423 NGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIK 482
Query: 156 QNVVTLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
+ +T L+Q L +G P T+ +I A C G + KAL L
Sbjct: 483 PDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQL 542
Query: 199 LFLMYEHGKIPSRTSHDMLIKKLDQQ 224
M E G +P ++ +LI L++Q
Sbjct: 543 HNEMVEKGVLPDVVTYSVLINGLNKQ 568
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 97/228 (42%), Gaps = 37/228 (16%)
Query: 28 ESLDLKENPRSLQAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
E L +P + +D I KE + +F ++ G S + LL L
Sbjct: 323 EMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNA 382
Query: 87 EQDTAVKFF----SNHLMVGRV---------------EEAYEMLMNVKNDGLKPDVYTYT 127
E D A F+ N + VGR+ +EA +L + DG+ PD+ TY+
Sbjct: 383 EFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYS 442
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQRLEM-------------- 170
A+++GFCKVGR A E++ G++ N + TLI R+
Sbjct: 443 ALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILE 502
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
GH TFN ++ +LC GK+ +A + M G +P+ S D LI
Sbjct: 503 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 36/199 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------------NH 98
+ IF + K G + + L+ L D A K F+ N
Sbjct: 177 LKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLING 236
Query: 99 LMVGR-VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
L + V+EA L +K+ G++P+V+TY+++MDG CK GRS +AMEL + RG N
Sbjct: 237 LCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPN 296
Query: 158 VVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+VT ++LL R+ + G P + VI C + K +A L
Sbjct: 297 MVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLD 356
Query: 201 LMYEHGKIPSRTSHDMLIK 219
M G P+R + ++ +K
Sbjct: 357 EMILGGITPNRLTWNIHVK 375
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 19/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ A E++ + +G PDVYTY +++ G CK+G EA+E+L++ I R + N VT
Sbjct: 309 GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTY 368
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF-LMY 203
L+ L G +P TFN++IQ LC + + H+ + LF M
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC-LTRNHRVAMELFEEMR 427
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P +++MLI L
Sbjct: 428 SKGCEPDEFTYNMLIDSL 445
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 17/139 (12%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M R++EA EM + + G PDV TY+ +++G+CK + M+L E +RGV +N V
Sbjct: 303 MYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTV 362
Query: 160 TLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T L+Q + G P IT+N ++ LC GKI KAL++L M
Sbjct: 363 TYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADM 422
Query: 203 YEHGKIPSRTSHDMLIKKL 221
++G +++++I+ +
Sbjct: 423 QKNGMDADIVTYNIIIRGM 441
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + AY +L + + GL PD +TYT+++D CK R EA +L + ++GV NVV
Sbjct: 476 GNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMY 535
Query: 162 IQLLQ------RLEMGH-----------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ +++ H +P ++TFN +I LC GK+ +A LL M +
Sbjct: 536 TALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVK 595
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ ++ +LI +L
Sbjct: 596 IGLQPTVSTDTILIHRL 612
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NH 98
L IDI + + G + +N LL + D A+++ N
Sbjct: 360 LGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNT 419
Query: 99 LMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
++ G+VE+A E+L + + G P + TY ++DG K G++ +A++LL+E +
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD 479
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ + +T L+ L MG P +TFN+++ LC + +A+
Sbjct: 480 LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAI 539
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L M G P+ TS+ +LI+ L
Sbjct: 540 DFLVFMINRGCKPNETSYTILIEGL 564
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 225 | ||||||
| 224140601 | 535 | predicted protein [Populus trichocarpa] | 0.617 | 0.259 | 0.329 | 3e-18 | |
| 255575578 | 271 | pentatricopeptide repeat-containing prot | 0.693 | 0.575 | 0.312 | 7e-18 | |
| 357506669 | 583 | Pentatricopeptide repeat-containing prot | 0.617 | 0.238 | 0.300 | 4e-15 | |
| 302806665 | 1636 | hypothetical protein SELMODRAFT_424099 [ | 0.702 | 0.096 | 0.246 | 6e-15 | |
| 302809105 | 725 | hypothetical protein SELMODRAFT_123660 [ | 0.702 | 0.217 | 0.246 | 6e-15 | |
| 297838419 | 568 | pentatricopeptide repeat-containing prot | 0.52 | 0.205 | 0.350 | 1e-13 | |
| 449508067 | 830 | PREDICTED: pentatricopeptide repeat-cont | 0.524 | 0.142 | 0.333 | 1e-13 | |
| 15234269 | 566 | pentatricopeptide repeat-containing prot | 0.52 | 0.206 | 0.343 | 1e-13 | |
| 449463386 | 830 | PREDICTED: pentatricopeptide repeat-cont | 0.524 | 0.142 | 0.333 | 1e-13 | |
| 359475386 | 762 | PREDICTED: pentatricopeptide repeat-cont | 0.693 | 0.204 | 0.285 | 2e-13 |
| >gi|224140601|ref|XP_002323670.1| predicted protein [Populus trichocarpa] gi|222868300|gb|EEF05431.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 87/173 (50%), Gaps = 34/173 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L+ +F + + G ++ +N LL + VGR++EA+
Sbjct: 223 KMGQLQNTFQVFEVMDRIGCKPNIQTYNCLLKGMCY----------------VGRIDEAF 266
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E++ ++K ++PD+YTYTA+MDGFCKVGRS+EAMELLNEA+E G+ NVV
Sbjct: 267 ELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELLNEAMEMGLAPNVV--------- 317
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
TFN ++ G+ K +L LM + +P S+ L+ L
Sbjct: 318 ---------TFNTLLDGYAKEGRPLKGFGVLKLMKQRKCMPDYISYSTLLHGL 361
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575578|ref|XP_002528689.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223531861|gb|EEF33678.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 33/189 (17%)
Query: 28 ESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87
ES+ LQ ++ +D I+A P K R +I + KDG S+SDFNDLLMALV+ NE
Sbjct: 43 ESVKFDAKASRLQVEKLLDAIRALPFKGRTEILDVFGKDGEIPSISDFNDLLMALVIANE 102
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
D A+ +S +V GL PD +T++ ++ CK ++EA +L+
Sbjct: 103 LDLALNMYS----------------DVSTLGLVPDSWTFSIVIRCHCKRNDADEAKRVLD 146
Query: 148 EAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVG 190
+E G+ NVVT L+ +G P T+N +++ LC +G
Sbjct: 147 RMLENGLNPNVVTFTTLINSFCKKGKLQKAYEVIDVMNTIGCQPNVQTYNCLLKGLCYIG 206
Query: 191 KIHKALLLL 199
K+ +A +L
Sbjct: 207 KVEEAYEIL 215
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357506669|ref|XP_003623623.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355498638|gb|AES79841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 34/173 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +K+ +++F +++ G V +N LL L VGRV+EA
Sbjct: 193 KRGKVKKAMEVFEFLERKGLKLGVQAYNCLLRGLAY----------------VGRVDEAV 236
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+LM++K + DVY+Y+A+M+G CKVGRS+EAMEL +EA+ G+
Sbjct: 237 EILMDMKTGNIGVDVYSYSAVMNGLCKVGRSDEAMELFDEAVGVGLR------------- 283
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN +I+ G+ + + +L +M EHG + ++ ++ L
Sbjct: 284 -----PDVVTFNALIEGYSREGREMEGVGVLKMMKEHGCVADLINYKTVLHGL 331
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii] gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 89/191 (46%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA L E + + + G + ++ +N ++ H +GR++EA
Sbjct: 994 CKAGKLDEATALLQRMTRSGCSPNIVTYNTII----------------DGHCKLGRIDEA 1037
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
Y +L + + G +P+V TYT ++D FCK G++ +A+ L+ +E+G N+ T LL
Sbjct: 1038 YHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDM 1097
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
++ G +P +++N VI LC K+H+ +LLL M + +P
Sbjct: 1098 FCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPD 1157
Query: 211 RTSHDMLIKKL 221
+ + +I +
Sbjct: 1158 IVTFNTIIDAM 1168
|
Source: Selaginella moellendorffii Species: Selaginella moellendorffii Genus: Selaginella Family: Selaginellaceae Order: Selaginellales Class: Isoetopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii] gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 89/191 (46%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA L E + + + G + ++ +N ++ H +GR++EA
Sbjct: 266 CKAGKLDEATALLQRMTRSGCSPNIVTYNTII----------------DGHCKLGRIDEA 309
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
Y +L + + G +P+V TYT ++D FCK G++ +A+ L+ +E+G N+ T LL
Sbjct: 310 YHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDM 369
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
++ G +P +++N VI LC K+H+ +LLL M + +P
Sbjct: 370 FCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPD 429
Query: 211 RTSHDMLIKKL 221
+ + +I +
Sbjct: 430 IVTFNTIIDAM 440
|
Source: Selaginella moellendorffii Species: Selaginella moellendorffii Genus: Selaginella Family: Selaginellaceae Order: Selaginellales Class: Isoetopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ +EM ++ DG+ P++YTY +M+ CK GR+ +A +L +E ERGV+ N+VT
Sbjct: 247 GIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTY 306
Query: 162 IQLLQRL--EM---------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM G P IT+N +I CGVGK+ KAL L +
Sbjct: 307 NTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKS 366
Query: 205 HGKIPSRTSHDMLI 218
G PS ++++L+
Sbjct: 367 RGLSPSLVTYNILV 380
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA +ML + G++P VYTYT + C G S+EA+ELL + +RG N+ T
Sbjct: 286 GRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTF 345
Query: 162 IQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L G +P T+T+N +I LC G+ A + M
Sbjct: 346 TALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLS 405
Query: 205 HGKIPSRTSHDMLIK 219
HG +PS +++ +IK
Sbjct: 406 HGSLPSTQTYNEIIK 420
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana] gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana] gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ +EM ++ DG+ P++YTY +M+ CK GR+ +A ++ +E ERGV+ N+VT
Sbjct: 247 GVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTY 306
Query: 162 IQLLQRL--EM---------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM G P IT+N +I CGVGK+ KAL L +
Sbjct: 307 NTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKS 366
Query: 205 HGKIPSRTSHDMLI 218
G PS ++++L+
Sbjct: 367 RGLSPSLVTYNILV 380
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA +ML + G++P VYTYT + C G S+EA+ELL + +RG N+ T
Sbjct: 286 GRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTF 345
Query: 162 IQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L G +P T+T+N +I LC G+ A + M
Sbjct: 346 TALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLS 405
Query: 205 HGKIPSRTSHDMLIK 219
HG +PS +++ +IK
Sbjct: 406 HGSLPSTQTYNEIIK 420
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 33/189 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L E I N + + G + SV +N F H ++ R+EEA ++
Sbjct: 405 LNEAYRILNEMTESGFSPSVVTYN----------------AFIHGHCVLERMEEALGVVQ 448
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------ 166
+ GL PDV +Y+ I+ GFC+ G + A ++ E +E+GV+ + VT L+Q
Sbjct: 449 EMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMR 508
Query: 167 -----------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
L+MG P T+ +I A C G ++KAL L M G +P ++
Sbjct: 509 RLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYS 568
Query: 216 MLIKKLDQQ 224
+LI L++Q
Sbjct: 569 VLINGLNKQ 577
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 225 | ||||||
| TAIR|locus:2139732 | 566 | AT4G11690 [Arabidopsis thalian | 0.284 | 0.113 | 0.375 | 1.7e-11 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.315 | 0.095 | 0.323 | 3.4e-11 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.551 | 0.169 | 0.315 | 4.2e-11 | |
| TAIR|locus:2161408 | 472 | AT5G46100 "AT5G46100" [Arabido | 0.288 | 0.137 | 0.446 | 1.7e-10 | |
| TAIR|locus:2039558 | 799 | AT2G26790 [Arabidopsis thalian | 0.586 | 0.165 | 0.309 | 2.2e-10 | |
| TAIR|locus:2024367 | 607 | AT1G09680 "AT1G09680" [Arabido | 0.462 | 0.171 | 0.254 | 4.4e-10 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.52 | 0.189 | 0.291 | 1.1e-06 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.568 | 0.167 | 0.279 | 2.3e-09 | |
| TAIR|locus:2084978 | 602 | AT3G04760 [Arabidopsis thalian | 0.297 | 0.111 | 0.358 | 3.1e-06 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.528 | 0.130 | 0.288 | 4.6e-07 |
| TAIR|locus:2139732 AT4G11690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 24/64 (37%), Positives = 42/64 (65%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ +EM ++ DG+ P++YTY +M+ CK GR+ +A ++ +E ERGV+ N+VT
Sbjct: 247 GVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTY 306
Query: 162 IQLL 165
L+
Sbjct: 307 NTLI 310
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 23/71 (32%), Positives = 45/71 (63%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ H + G++E+A +L ++K GL PDV +Y+ ++ GFC+ +EA+ + E +E+G+
Sbjct: 423 NGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIK 482
Query: 156 QNVVTLIQLLQ 166
+ +T L+Q
Sbjct: 483 PDTITYSSLIQ 493
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 144 (55.7 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 41/130 (31%), Positives = 67/130 (51%)
Query: 54 KERIDIFNS-IKKDGTNWSVSD----FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K I IFN+ I T+ + D +D++ + ++ + T + G V A
Sbjct: 350 KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLAL 409
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+L +++N G KP+VY+YT ++DGFCK+G+ +EA +LNE G+ N V L+
Sbjct: 410 EVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAF 469
Query: 169 EMGH-IPRTI 177
H IP +
Sbjct: 470 CKEHRIPEAV 479
|
|
| TAIR|locus:2161408 AT5G46100 "AT5G46100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 146 (56.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V+EA L +K+ G++P+V+TY+++MDG CK GRS +AMEL + RG N+VT
Sbjct: 243 VDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTT 302
Query: 164 LLQRL 168
L+ L
Sbjct: 303 LITGL 307
|
|
| TAIR|locus:2039558 AT2G26790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 154 (59.3 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 43/139 (30%), Positives = 74/139 (53%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSI-----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
+A F+DK+ LK I + I K D ++ F + + L+ V F
Sbjct: 336 EALGFLDKMLGKGLKVNCVIVSLILQCYCKMDMCLEALEKFKEFRDMNIFLDRVCYNVAF 395
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ + GRVEEA+E+L +K+ G+ PDV YT ++DG+C G+ +A++L++E I G+
Sbjct: 396 DALSKL-GRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGM 454
Query: 155 TQNVVTLIQLLQRLEM-GH 172
+ +++T L+ L GH
Sbjct: 455 SPDLITYNVLVSGLARNGH 473
|
|
| TAIR|locus:2024367 AT1G09680 "AT1G09680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 119 (46.9 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 28/110 (25%), Positives = 55/110 (50%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVK 115
+ N K+G ++SD + + + Q T V F + + VG ++E + + ++
Sbjct: 246 LMNKFCKEG---NISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQME 302
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
+PDV+TY+A+++ CK + + A L +E +RG+ N V L+
Sbjct: 303 KSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLI 352
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 39/134 (29%), Positives = 68/134 (50%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G ++A + ++ G+K DV TY++++ G C G+ ++ ++L E I R + +VVT
Sbjct: 259 GSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTF 318
Query: 161 --LI-------QLLQRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI +LL+ E+ G P TIT+N++I C +H+A + LM
Sbjct: 319 SALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVS 378
Query: 205 HGKIPSRTSHDMLI 218
G P ++ +LI
Sbjct: 379 KGCEPDIVTYSILI 392
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 130 (50.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 38/136 (27%), Positives = 68/136 (50%)
Query: 39 LQAQRFVDKIKASPLKERIDIFNSIKKDGTNWS-VSDFNDLLMALVMLNEQDTAVKFFSN 97
L+A + +++ L + FN + VSD + L+ VM+++ F N
Sbjct: 408 LEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVK--VMISKGYFPDIFTFN 465
Query: 98 HLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
L+ G ++E A E+L + ++G+ PDVYTY ++++G CK + + ME +E+
Sbjct: 466 ILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEK 525
Query: 153 GVTQNVVTLIQLLQRL 168
G N+ T LL+ L
Sbjct: 526 GCAPNLFTFNILLESL 541
|
|
| TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++EEA +L +K GL PD Y+Y ++ FC+ GR + A+E L I G ++V
Sbjct: 347 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNY 406
Query: 162 IQLLQRL 168
+L L
Sbjct: 407 NTVLATL 413
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 142 (55.0 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 39/135 (28%), Positives = 68/135 (50%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL---------------N 147
+ E+A E+L + GL P+V TY A+++G+CK G +A++++ N
Sbjct: 373 KFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYN 432
Query: 148 EAIERGVTQNVVTLIQLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
E I+ NV + +L + LE +P +T+N++I C G A LL LM + G
Sbjct: 433 ELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRG 492
Query: 207 KIPSRTSHDMLIKKL 221
+P + ++ +I L
Sbjct: 493 LVPDQWTYTSMIDSL 507
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00161314 | hypothetical protein (535 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 225 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 8e-12
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 18/67 (26%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN 180
PDV TY ++DG+CK G+ EA++L NE +RG+ NV T++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVY------------------TYS 42
Query: 181 NVIQALC 187
+I LC
Sbjct: 43 ILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 2e-10
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
GLKPDV TY ++DG C+ GR +EA+ELL+E
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 1e-09
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 97 NHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
N L+ G+VEEA ++ +K G+KP+VYTY+ ++DG CK
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 4e-06
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
TY ++DG CK GR EA+EL E ERG+ +V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 6e-06
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
TY +++ G+CK G+ EA+EL E E+GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-05
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+E+L + + G+K +Y+++M +A+EL + +
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED----------IKS 712
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
I+L P T N +I ALC ++ KAL +L M G P+ ++ +L+
Sbjct: 713 IKLR--------PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 3e-04
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+N +I C GK+ +AL L M + G P+ ++ +LI L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.001
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 20/120 (16%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMN 113
K+ ++++ IK +VS N L+ AL N+ + +A E+L
Sbjct: 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQ----------------LPKALEVLSE 744
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQL-LQRLE 169
+K GL P+ TY+ ++ + ++ ++LL++A E G+ N+V + L L+R E
Sbjct: 745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFE 804
|
Length = 1060 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 225 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.62 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.54 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.51 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.31 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.3 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.25 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.19 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.03 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.97 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.97 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.94 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.93 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.88 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.86 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.86 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.85 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.84 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.82 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.77 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.75 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.71 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.69 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 98.67 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.67 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.58 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.57 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.56 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.56 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.5 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.45 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.45 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.44 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.44 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.42 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.42 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 98.4 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.39 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.39 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.38 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.37 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.35 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 98.3 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.29 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.27 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.25 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.21 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.2 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.19 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.16 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.11 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 98.1 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.1 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.1 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.07 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.05 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 98.05 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 97.96 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.95 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 97.91 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.89 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.89 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.88 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 97.87 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 97.86 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 97.85 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.8 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.75 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.73 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.7 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.68 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.66 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.64 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.61 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 97.58 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.58 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.56 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 97.56 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.52 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 97.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.48 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 97.46 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.43 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.43 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 97.41 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.4 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.39 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.39 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.37 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.35 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.34 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 97.3 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.29 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.28 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.25 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.25 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.25 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.25 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.25 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 97.23 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 97.19 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.17 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.17 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.17 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.12 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.12 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.11 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 97.09 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.09 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.02 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.98 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.95 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 96.93 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 96.91 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.88 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 96.87 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.83 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 96.75 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 96.71 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.7 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 96.69 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.67 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.64 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.63 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.63 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.6 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 96.56 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.56 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.55 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.5 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 96.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 96.47 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 96.46 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.46 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.45 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.42 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 96.39 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 96.36 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.33 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.29 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.26 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 96.24 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 96.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.22 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 96.21 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.03 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 96.02 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 95.98 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 95.97 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 95.97 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.95 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.85 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 95.84 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.79 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.64 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 95.62 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.5 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 95.4 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 95.39 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 95.37 | |
| PLN02789 | 320 | farnesyltranstransferase | 95.26 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.23 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 94.99 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.98 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 94.92 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 94.89 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 94.8 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 94.72 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 94.71 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 94.66 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 94.6 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.44 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.34 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 94.31 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.31 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.26 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 94.19 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 94.17 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 94.05 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.04 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.85 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 93.76 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 93.74 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 93.73 | |
| PLN02789 | 320 | farnesyltranstransferase | 93.69 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 93.69 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 93.65 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 93.37 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.32 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 93.2 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.99 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.89 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 92.86 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.76 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 92.73 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 92.69 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.65 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 92.36 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 92.22 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.14 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.11 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.76 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.68 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 91.62 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 91.51 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.35 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.35 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 91.33 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 91.31 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.26 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.82 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 90.79 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 90.78 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 90.29 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.19 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.16 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.12 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.09 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 89.92 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.76 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.27 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 89.27 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.9 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 88.81 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.72 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.39 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 88.34 | |
| PF11848 | 48 | DUF3368: Domain of unknown function (DUF3368); Int | 88.23 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 88.1 | |
| PRK10564 | 303 | maltose regulon periplasmic protein; Provisional | 87.92 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 87.84 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 87.83 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.79 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 87.44 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 87.38 | |
| PF11848 | 48 | DUF3368: Domain of unknown function (DUF3368); Int | 86.95 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 86.46 | |
| PF11663 | 140 | Toxin_YhaV: Toxin with endonuclease activity YhaV; | 86.37 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.31 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.24 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.02 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.54 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.47 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 85.39 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 84.61 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 84.5 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 84.35 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 84.04 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.0 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 83.82 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 83.62 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 83.05 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 83.0 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 82.93 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 82.86 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 82.82 | |
| PF10366 | 108 | Vps39_1: Vacuolar sorting protein 39 domain 1; Int | 82.51 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.5 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 81.57 | |
| PF11663 | 140 | Toxin_YhaV: Toxin with endonuclease activity YhaV; | 80.96 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 80.83 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 80.81 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 80.58 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.53 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=282.62 Aligned_cols=214 Identities=20% Similarity=0.284 Sum_probs=115.2
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcch-------hhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRS-------LQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
+|+.++.+|++.|++++|.+++++|.. ..|+.++..+ +.|++++|.++|++|++.|+.||..+|++||.+|+
T Consensus 474 tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~ 553 (1060)
T PLN03218 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 334555555555555555555554432 2233444422 45555555555555555555555555555555555
Q ss_pred hcCCHHHHHHHHHHH--------------------------------------------------------HhcCCHHHH
Q 045820 84 MLNEQDTAVKFFSNH--------------------------------------------------------LMVGRVEEA 107 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~--------------------------------------------------------~~~g~~~~a 107 (225)
+.|++++|.++|++| ++.|++++|
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 555555555555444 344445555
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-----------------HHhhc
Q 045820 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEM 170 (225)
Q Consensus 108 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~ 170 (225)
.++|++|.+.|+.||..+|+++|++|++.|++++|.++|++|.+.|+.||..+|++|| +|.+.
T Consensus 634 l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~ 713 (1060)
T PLN03218 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 5555555555555555555555555555555555555555555555555555555554 33345
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 171 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|++.|
T Consensus 714 g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 5666666666666666666666666666666666666666666666666666554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=281.37 Aligned_cols=217 Identities=16% Similarity=0.226 Sum_probs=199.6
Q ss_pred CCCCC-chhhHhhhcCCCCCChhhcchhhcCcch---------hhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhh
Q 045820 6 ANSPT-PFSVLLVDSPSRSPSAAESLDLKENPRS---------LQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSD 74 (225)
Q Consensus 6 ~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~ 74 (225)
+..|+ .+|+.++.+|++.|++++|.+++.+|.. ..|+.++..+ +.|++++|.++|+.|.+.|+.|+..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 34444 5666889999999999999988887743 3466777754 89999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH-------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 045820 75 FNDLLMALVMLNEQDTAVKFFSNH-------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135 (225)
Q Consensus 75 ~~~li~~~~~~~~~~~a~~~~~~~-------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 135 (225)
|+++|.+|++.|++++|.++|++| ++.|++++|.++|++|.+.|+.||..+||++|.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999 7789999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHH-----------------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 045820 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198 (225)
Q Consensus 136 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 198 (225)
.|++++|.++|++|.+.|+.||..||+++| +|.+.|+.||..||+++|.+|++.|++++|.++
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999 577889999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhh
Q 045820 199 LFLMYEHGKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 199 ~~~m~~~g~~p~~~~~~~ll~~~~ 222 (225)
|++|.+.|+.||..+|++|+..|.
T Consensus 777 ~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 777 LSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999997653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=262.88 Aligned_cols=219 Identities=15% Similarity=0.180 Sum_probs=190.5
Q ss_pred CCCC-chhhHhhhcCCCCCChhhcchhhcCcch---hhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCC----------
Q 045820 7 NSPT-PFSVLLVDSPSRSPSAAESLDLKENPRS---LQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWS---------- 71 (225)
Q Consensus 7 ~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~---------- 71 (225)
..|+ .+++.+++.|++.|++++|.++|++|.. ..|+.++..+ +.|++++|+++|++|.+.|+.|+
T Consensus 154 ~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a 233 (697)
T PLN03081 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233 (697)
T ss_pred CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 3344 5666899999999999999999998754 4588888754 88999999999999977766555
Q ss_pred -------------------------hhhHHHHHHHHHhcCCHHHHHHHHHHH---------------HhcCCHHHHHHHH
Q 045820 72 -------------------------VSDFNDLLMALVMLNEQDTAVKFFSNH---------------LMVGRVEEAYEML 111 (225)
Q Consensus 72 -------------------------~~~~~~li~~~~~~~~~~~a~~~~~~~---------------~~~g~~~~a~~~~ 111 (225)
..+||+||++|+++|++++|.++|++| ++.|++++|.++|
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 455677888999999999999999888 8889999999999
Q ss_pred HHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhh-------------cCCCCCHHH
Q 045820 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE-------------MGHIPRTIT 178 (225)
Q Consensus 112 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~-------------~~~~p~~~~ 178 (225)
++|.+.|+.||..||++++.+|++.|++++|.+++.+|.+.|+.||..+|++|+.++. .-..||..+
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t 393 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS 393 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeee
Confidence 9999999999999999999999999999999999999999999999999999995542 234689999
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
||+||.+|+++|+.++|.++|++|.+.|+.||..||+.+|.+|+++|
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999998876
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=256.40 Aligned_cols=208 Identities=17% Similarity=0.247 Sum_probs=191.7
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcch---hhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRS---LQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 86 (225)
.+++.|++.|++.|++++|.++|++|.. ..|+.++..+ +.|++++|+++|++|.+.|+.||..||+++|.+|++.|
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 5566899999999999999999998764 4677888755 89999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH-------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 87 EQDTAVKFFSNH-------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 87 ~~~~a~~~~~~~-------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
+++.|.+++..| ++.|++++|.++|++|. .||+.+||+||.+|+++|+.++|.++|+
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999988 78899999999999997 4899999999999999999999999999
Q ss_pred HHHHcCCCccHHHHHHHH-----------------HHhh-cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC
Q 045820 148 EAIERGVTQNVVTLIQLL-----------------QRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 148 ~m~~~g~~p~~~t~~~l~-----------------~~~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
+|.+.|+.||..||++++ .|.+ .|+.|+..+|+.+|.+|++.|++++|.+++++| ++.|
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p 492 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKP 492 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCC
Confidence 999999999999999999 3433 589999999999999999999999999998765 6899
Q ss_pred CHHHHHHHHHHhhcCC
Q 045820 210 SRTSHDMLIKKLDQQP 225 (225)
Q Consensus 210 ~~~~~~~ll~~~~~~g 225 (225)
|..+|++|+.+|+++|
T Consensus 493 ~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 493 TVNMWAALLTACRIHK 508 (697)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999998875
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=252.87 Aligned_cols=215 Identities=16% Similarity=0.174 Sum_probs=181.1
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcch---hhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhH-----------
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRS---LQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDF----------- 75 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~----------- 75 (225)
..++.++..|++.|+++.|.++|++|.. ..|+.++..+ +.|++++|+++|++|++.|+.||..||
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 4556788888888888888888888653 4577777755 788888888888888887777776665
Q ss_pred ------------------------HHHHHHHHhcCCHHHHHHHHHHH---------------HhcCCHHHHHHHHHHHhh
Q 045820 76 ------------------------NDLLMALVMLNEQDTAVKFFSNH---------------LMVGRVEEAYEMLMNVKN 116 (225)
Q Consensus 76 ------------------------~~li~~~~~~~~~~~a~~~~~~~---------------~~~g~~~~a~~~~~~m~~ 116 (225)
|+||.+|++.|+++.|.++|++| ++.|++++|+++|++|.+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 66667778888888888888877 778999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh-------------hcCCCCCHHHHHHHH
Q 045820 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-------------EMGHIPRTITFNNVI 183 (225)
Q Consensus 117 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~-------------~~~~~p~~~~~~~li 183 (225)
.|+.||..||+++|.+|++.|+.+.|.+++..|.+.|+.||..+|++|+.++ +.-..||..+||++|
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li 361 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHH
Confidence 9999999999999999999999999999999999999999999999999333 333468889999999
Q ss_pred HHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 184 QALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 999999999999999999998999999999999998888765
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=243.41 Aligned_cols=214 Identities=14% Similarity=0.156 Sum_probs=148.6
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcc---hhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPR---SLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML- 85 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~- 85 (225)
..++.|+++|++.|++++|.++|++|. ...|+.++..+ +.|++++|+++|++|.+.|+.||..||+.+|.+|++.
T Consensus 223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred chHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 455577788888888888888877764 34566666644 7777777777777777776666666555555555554
Q ss_pred ----------------------------------CCHHHHHHHHHHH---------------HhcCCHHHHHHHHHHHhh
Q 045820 86 ----------------------------------NEQDTAVKFFSNH---------------LMVGRVEEAYEMLMNVKN 116 (225)
Q Consensus 86 ----------------------------------~~~~~a~~~~~~~---------------~~~g~~~~a~~~~~~m~~ 116 (225)
|+++.|.++|++| .+.|++++|.++|++|.+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5555555555444 556666666777776666
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh-------------hcCCCCCHHHHHHHH
Q 045820 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-------------EMGHIPRTITFNNVI 183 (225)
Q Consensus 117 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~-------------~~~~~p~~~~~~~li 183 (225)
.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.|+..+|++|+.++ +.-..+|..+||++|
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi 462 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 6666777777777777777777777777777777777777777777766332 222356777888888
Q ss_pred HHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 184 QALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
.+|+++|+.++|.++|++|.+ +++||..||+.+|.+|++.|
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 888888888888888888875 58899999999988888754
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-17 Score=92.40 Aligned_cols=50 Identities=32% Similarity=0.549 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||++||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999986
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-14 Score=112.46 Aligned_cols=179 Identities=20% Similarity=0.273 Sum_probs=145.4
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--CHHHHH-HHHHHH----------HhcCCHHH
Q 045820 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN--EQDTAV-KFFSNH----------LMVGRVEE 106 (225)
Q Consensus 40 ~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--~~~~a~-~~~~~~----------~~~g~~~~ 106 (225)
+-+.++..+.+|.++++.-+|+.|++.|+..+...--.|+..-+-.+ ++--+. +-|-.| =+.|++.+
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 45568888999999999999999999999999988777776544333 222222 233333 22343333
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-------------HHhhcCCC
Q 045820 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-------------QRLEMGHI 173 (225)
Q Consensus 107 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-------------~~~~~~~~ 173 (225)
++-+.. +.+..||.+||.+.||-...+.|.+++.+-.....+.+..+||.+| +|....+.
T Consensus 198 ---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 198 ---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMT 270 (625)
T ss_pred ---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcC
Confidence 333333 3467899999999999999999999999999999999999999999 78899999
Q ss_pred CCHHHHHHHHHHHHccCcHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 174 PRTITFNNVIQALCGVGKIHK----ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
||..|||+++++.++.|+++. |.+++.+|++-|+.|...+|..+|+.++|.+
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~ 326 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRES 326 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccC
Confidence 999999999999999998875 5789999999999999999999999999864
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-15 Score=86.40 Aligned_cols=50 Identities=42% Similarity=0.913 Sum_probs=45.7
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 045820 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG 188 (225)
Q Consensus 121 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~ 188 (225)
||+.+||++|++|++.|++++|.++|++|++.|++ ||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~------------------P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIK------------------PDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC------------------CCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999998 777777777787764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-12 Score=105.64 Aligned_cols=208 Identities=17% Similarity=0.139 Sum_probs=147.8
Q ss_pred chhhHhhhcCCCCCChhhcchhhcC----cch------hhhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKEN----PRS------LQAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLL 79 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~----~~~------~~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 79 (225)
..+..+...+.+.|++++|...++. +.. ..+..+.. .++.|++++|..+|+++.+. -+.+..+++.+.
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la 148 (389)
T PRK11788 70 ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLL 148 (389)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4555777788888888888876544 221 11222333 34778889999888888765 244677888888
Q ss_pred HHHHhcCCHHHHHHHHHHH-----------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 045820 80 MALVMLNEQDTAVKFFSNH-----------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136 (225)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~-----------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 136 (225)
..+.+.|++++|.+.++.+ ...|++++|...|+++.+.. +.+...+..+...|.+.
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 149 EIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHC
Confidence 8888888888888887666 24588888888888887643 22455777788888888
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh-------------h--cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 137 GRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-------------E--MGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 137 g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~-------------~--~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
|++++|..+++++.+.+......+++.+...+ + ....|+...+..+...+.+.|++++|..++++
T Consensus 228 g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 228 GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88888988888888654332234444444111 0 12347777778888999999999999999998
Q ss_pred HHhcCCCCCHHHHHHHHHHhh
Q 045820 202 MYEHGKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 202 m~~~g~~p~~~~~~~ll~~~~ 222 (225)
+.+. .|+..+++.++..+.
T Consensus 308 ~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 308 QLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHh--CcCHHHHHHHHHHhh
Confidence 8865 688888888887765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-12 Score=104.39 Aligned_cols=208 Identities=14% Similarity=0.063 Sum_probs=152.4
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHh
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWS---VSDFNDLLMALVM 84 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~ 84 (225)
.....+...|++++|+..+.++.... +..+.. ....|++++|..+++.+.+.+..++ ...+..+...|.+
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 33445677899999999998864332 122222 2388999999999999987643222 3568889999999
Q ss_pred cCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCC----HHhHHHHHHHHHhcCCHHHH
Q 045820 85 LNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPD----VYTYTAIMDGFCKVGRSNEA 142 (225)
Q Consensus 85 ~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a 142 (225)
.|+++.|..+|+++ .+.|++++|.+.++.+.+.+..++ ...|..+...+.+.|++++|
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999888 568999999999999987653332 12456677788999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHH-----------------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 143 MELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 143 ~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
...|+++.+..- .+...+..+. ++.+.+......+++.+..+|.+.|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999987542 2233443333 1222221122467889999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHhhcCC
Q 045820 206 GKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 206 g~~p~~~~~~~ll~~~~~~g 225 (225)
.|+...+..+...+.++|
T Consensus 279 --~p~~~~~~~la~~~~~~g 296 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQE 296 (389)
T ss_pred --CCCchHHHHHHHHHHHhC
Confidence 477777788888887765
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-09 Score=95.97 Aligned_cols=171 Identities=12% Similarity=0.067 Sum_probs=99.8
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
+.|++++|...|+.+.+.. +.+...+..+..++.+.|++++|...|+.+ ...|++++|.++
T Consensus 613 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 691 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555555665555554432 224444555555555556666665555544 445666666666
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH----------------HhhcCCCC
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ----------------RLEMGHIP 174 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~----------------~~~~~~~p 174 (225)
++.+.+.+ +.+...+..+...+.+.|++++|...|.++.+.+..+ .++..+.. ..-.....
T Consensus 692 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 768 (899)
T TIGR02917 692 AKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768 (899)
T ss_pred HHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 66665543 2355566666666777777777777777766554322 33322221 01112234
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
+...+..+...|...|++++|..+|+++.+.. +.+..+++.+...+.+.
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 56677777777888888888888888887653 34566677666666544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-10 Score=98.74 Aligned_cols=211 Identities=16% Similarity=0.086 Sum_probs=166.4
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+...+.+.|++++|...+.+.... .+..+.. .+..|++++|..+++.+.+.+ +.+...+..+...+.
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 45557788899999999999998774322 1222333 348899999999999998875 557788888999999
Q ss_pred hcCCHHHHHHHHHHH-----------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 84 MLNEQDTAVKFFSNH-----------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~-----------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
+.|++++|...|+.+ ...|++++|.+.+.++.+.. +.+...++.+...|.+.|++++|...|
T Consensus 715 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred HCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 999999999999876 56799999999999988753 457888999999999999999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHh------------hc--C-CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 147 NEAIERGVTQNVVTLIQLLQRL------------EM--G-HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 147 ~~m~~~g~~p~~~t~~~l~~~~------------~~--~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
+++.+.. +.+..+++.+.... +. . ..-+..++..+...+...|++++|..+++++.+.+.. +.
T Consensus 794 ~~~~~~~-p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~ 871 (899)
T TIGR02917 794 RTVVKKA-PDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AA 871 (899)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ch
Confidence 9998865 34566666554211 11 1 1234556778888899999999999999999987643 88
Q ss_pred HHHHHHHHHhhcCC
Q 045820 212 TSHDMLIKKLDQQP 225 (225)
Q Consensus 212 ~~~~~ll~~~~~~g 225 (225)
.++..+..+|.+.|
T Consensus 872 ~~~~~l~~~~~~~g 885 (899)
T TIGR02917 872 AIRYHLALALLATG 885 (899)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998876
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-10 Score=89.93 Aligned_cols=97 Identities=14% Similarity=0.336 Sum_probs=84.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHH---------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 045820 69 NWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133 (225)
Q Consensus 69 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 133 (225)
+.+..||.+||.+.|+-...+.|.+++++- ...-.+....++..+|.+..+.||..|||+++.+.
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 557889999999999999999999999887 22223344478999999999999999999999999
Q ss_pred HhcCCHHH----HHHHHHHHHHcCCCccHHHHHHHH
Q 045820 134 CKVGRSNE----AMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 134 ~~~g~~~~----a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
++.|+++. |.+++.+|++.|+.|+..+|..+|
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~ii 319 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLII 319 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 99998776 478889999999999999999998
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-11 Score=64.09 Aligned_cols=34 Identities=50% Similarity=0.991 Sum_probs=32.4
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 117 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
+|+.||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999984
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-11 Score=62.50 Aligned_cols=34 Identities=29% Similarity=0.563 Sum_probs=31.7
Q ss_pred cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 170 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
+|+.||..|||+||.+||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678999999999999999999999999999984
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.1e-07 Score=67.48 Aligned_cols=154 Identities=15% Similarity=0.081 Sum_probs=106.3
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAY 108 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~ 108 (225)
....|++++|...+++..+.. +.+...+..+...+...|+++.|.+.++.. ...|++++|.
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~ 119 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAM 119 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 347788888888888776553 334566777777888888888887777655 4567788888
Q ss_pred HHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 045820 109 EMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALC 187 (225)
Q Consensus 109 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~ 187 (225)
+.|.+..+....+ ....+..+-..+.+.|++++|...+.+..+..- .+...+..+...+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------------~~~~~~~~la~~~~ 180 (234)
T TIGR02521 120 QQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-------------------QRPESLLELAELYY 180 (234)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------------------CChHHHHHHHHHHH
Confidence 8888776532222 344566677778888888888888888776432 23456777778888
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 188 GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 188 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
..|++++|..++++..+. ...+...+..+...+
T Consensus 181 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT-YNQTAESLWLGIRIA 213 (234)
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 888888888888888765 233445554444444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.5e-07 Score=79.42 Aligned_cols=211 Identities=17% Similarity=0.118 Sum_probs=147.7
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh-----hhH-HHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL-----QAQ-RFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
.....+..+....|++++|+..+++.... ... .+.. ..+.|++++|...+++..+.. +-+...+..+...+.
T Consensus 77 ~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~ 155 (656)
T PRK15174 77 DLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLV 155 (656)
T ss_pred hHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 44555557777899999999888874332 111 2222 348899999999999887762 335677888999999
Q ss_pred hcCCHHHHHHHHHHH-----------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 84 MLNEQDTAVKFFSNH-----------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~-----------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
..|+.++|...++.+ ...|++++|...++.+.+....++...+..+..++.+.|++++|...+
T Consensus 156 ~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~ 235 (656)
T PRK15174 156 LMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTG 235 (656)
T ss_pred HCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999998888665 457999999999999876543344555666678889999999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHh-hc------------------CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 147 NEAIERGVTQNVVTLIQLLQRL-EM------------------GHIP-RTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 147 ~~m~~~g~~p~~~t~~~l~~~~-~~------------------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
++..+..-. +...+..+-..+ .. ...| +...+..+...+...|++++|...+++..+.
T Consensus 236 ~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l- 313 (656)
T PRK15174 236 ESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT- 313 (656)
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 998875422 222222222100 00 1223 4567888899999999999999999998874
Q ss_pred CCCC-HHHHHHHHHHhhcCC
Q 045820 207 KIPS-RTSHDMLIKKLDQQP 225 (225)
Q Consensus 207 ~~p~-~~~~~~ll~~~~~~g 225 (225)
.|+ ...+..+-.+|.+.|
T Consensus 314 -~P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 314 -HPDLPYVRAMYARALRQVG 332 (656)
T ss_pred -CCCCHHHHHHHHHHHHHCC
Confidence 344 455556666666554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.9e-09 Score=88.21 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=109.9
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---------CCCCCCHHhHHH
Q 045820 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN---------DGLKPDVYTYTA 128 (225)
Q Consensus 58 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~---------~g~~p~~~~~~~ 128 (225)
..+-.+...|+.||.+||..+|.-||..|+++.|- +|..| +..+..--..+|.-... +--.|...||+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~ 88 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTN 88 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCCCCchhHHHH
Confidence 46677889999999999999999999999999998 88777 11111111111111110 112578889999
Q ss_pred HHHHHHhcCCHHH---HHHHHHHHH----HcC-----------------CCccHHHHHHHH-------------------
Q 045820 129 IMDGFCKVGRSNE---AMELLNEAI----ERG-----------------VTQNVVTLIQLL------------------- 165 (225)
Q Consensus 129 ll~~~~~~g~~~~---a~~~~~~m~----~~g-----------------~~p~~~t~~~l~------------------- 165 (225)
++.+|.++||+.. .++.+.... ..| .-||..+-..+.
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 9999999998654 333222211 122 224444333222
Q ss_pred ------------------------HHhhcCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 045820 166 ------------------------QRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220 (225)
Q Consensus 166 ------------------------~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 220 (225)
.+++.... |+..+|.+++.+-.-+|+++.|..++.+|.+.|+..+.+-|-.|+-+
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 33444444 99999999999999999999999999999999988887766655543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.5e-07 Score=78.75 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=35.1
Q ss_pred HHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 045820 107 AYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQA 185 (225)
Q Consensus 107 a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~ 185 (225)
|...|++..+. .| +...+..+...+.+.|++++|...+++..+.. |+ +...+..+...
T Consensus 269 A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~-----------------~~~a~~~La~~ 327 (656)
T PRK15174 269 AAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PD-----------------LPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC-----------------CHHHHHHHHHH
Confidence 44444444432 22 33344444555555555555555555444321 11 22334444455
Q ss_pred HHccCcHHHHHHHHHHHHh
Q 045820 186 LCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 186 ~~~~g~~~~a~~~~~~m~~ 204 (225)
|.+.|++++|...++.+.+
T Consensus 328 l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=78.96 Aligned_cols=206 Identities=14% Similarity=0.161 Sum_probs=84.7
Q ss_pred HhhhcCCCCCChhhcchhhcC-cchh------hhHHHHHH--HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 15 LLVDSPSRSPSAAESLDLKEN-PRSL------QAQRFVDK--IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~-~~~~------~~~~l~~~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
.+...+.+.|++++|++++.+ .... .+..+... ...++.+.|...++++.+.+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 557778889999999998843 2222 12222222 2678889999999988876544 56667777777 688
Q ss_pred CCHHHHHHHHHHH-----------------HhcCCHHHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 86 NEQDTAVKFFSNH-----------------LMVGRVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 86 ~~~~~a~~~~~~~-----------------~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
++.++|.+++... ...++++++.+++++..... .+.+...|..+-..+.+.|+.++|+.+++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888776544 66788899999988876532 34577788888888999999999999999
Q ss_pred HHHHcCCCcc-HHHHHHHH----------------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 148 EAIERGVTQN-VVTLIQLL----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 148 ~m~~~g~~p~-~~t~~~l~----------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
+..+.. |+ ....+.++ .........|...|..+..+|...|+.++|..++++..+.. +-|
T Consensus 171 ~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 988753 43 33444443 11222234667788999999999999999999999988742 336
Q ss_pred HHHHHHHHHHhhcCC
Q 045820 211 RTSHDMLIKKLDQQP 225 (225)
Q Consensus 211 ~~~~~~ll~~~~~~g 225 (225)
..+...+.+++...|
T Consensus 248 ~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 248 PLWLLAYADALEQAG 262 (280)
T ss_dssp HHHHHHHHHHHT---
T ss_pred ccccccccccccccc
Confidence 777777777776655
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.3e-08 Score=82.89 Aligned_cols=172 Identities=15% Similarity=0.074 Sum_probs=107.1
Q ss_pred CCCCchhhHhhhcCCCCCChhhcchhhcCcchhhh--H-HHHHHH-----HhCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 045820 7 NSPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQA--Q-RFVDKI-----KASPLKERIDIFNSIKKDGTNWSVSDFNDL 78 (225)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-~l~~~~-----~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 78 (225)
.|...+|..++..||..|+++.|- .|.-|+..+. . .+.... ++++.+.+. .|...||..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 444567789999999999998877 6655543332 1 122222 333443333 7888999999
Q ss_pred HHHHHhcCCHHH---HHHHHHHH-------------------------------------HhcCCHHHHH----------
Q 045820 79 LMALVMLNEQDT---AVKFFSNH-------------------------------------LMVGRVEEAY---------- 108 (225)
Q Consensus 79 i~~~~~~~~~~~---a~~~~~~~-------------------------------------~~~g~~~~a~---------- 108 (225)
+.+|...||+.. +.+.+..+ .-.|.++.++
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999998654 33322222 1112222222
Q ss_pred --------------------HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH---
Q 045820 109 --------------------EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165 (225)
Q Consensus 109 --------------------~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~--- 165 (225)
++.+..+.-.-.|+..+|.+++++-.-+|+.+.|..++.+|++.|+..+.+.|-.|+
T Consensus 170 ~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g~ 249 (1088)
T KOG4318|consen 170 WNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLGI 249 (1088)
T ss_pred ccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhcC
Confidence 222222221115899999999999999999999999999999999986666554444
Q ss_pred -----------HHhhcCCCCCHHHHHHHHHHHHccC
Q 045820 166 -----------QRLEMGHIPRTITFNNVIQALCGVG 190 (225)
Q Consensus 166 -----------~~~~~~~~p~~~~~~~li~~~~~~g 190 (225)
.|.+.|+.|+..|+..-+..+..+|
T Consensus 250 ~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 250 NAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred ccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 3444455555555555444444433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.9e-07 Score=66.18 Aligned_cols=172 Identities=11% Similarity=0.017 Sum_probs=134.3
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
.+..+...+...|++++|.+.+.+..... +..+.. ....|++++|...+++..+.. +.+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 44466788889999999998887632221 111222 337899999999999887764 3356778888899999
Q ss_pred cCCHHHHHHHHHHH--------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 045820 85 LNEQDTAVKFFSNH--------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144 (225)
Q Consensus 85 ~~~~~~a~~~~~~~--------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 144 (225)
.|++++|.+.++.. ...|++++|...|.+..+.. +.+...+..+...+.+.|++++|..
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999988776 45689999999999987643 2356678889999999999999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 145 LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 145 ~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.+++..+.. . .+...+..+...+...|+.++|..+.+.+.+
T Consensus 191 ~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 191 YLERYQQTY-N------------------QTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHhC-C------------------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999988762 2 4556667778888899999999999888765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-06 Score=70.34 Aligned_cols=205 Identities=11% Similarity=0.066 Sum_probs=144.7
Q ss_pred hhcCCCCCChhhcchhhcCcchhh----hHH-HH---HHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 045820 17 VDSPSRSPSAAESLDLKENPRSLQ----AQR-FV---DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88 (225)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~----~~~-l~---~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 88 (225)
.....+.|++++|.+.+.++.... ... +. -.+..|+++.|...++.+.+.. +-+......+...|.+.|++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhH
Confidence 444488999999998887754332 111 12 2448899999999999998775 33677888999999999999
Q ss_pred HHHHHHHHHHHhcCCH--------------------------HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 045820 89 DTAVKFFSNHLMVGRV--------------------------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142 (225)
Q Consensus 89 ~~a~~~~~~~~~~g~~--------------------------~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 142 (225)
+.|..++..+.+.+.. +...++++.+.+ ..+.+......+..++.+.|+.++|
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~-~~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR-KTRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH-HHhCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999998888443322 112222222211 1234677788899999999999999
Q ss_pred HHHHHHHHHcCCCccHH-HHHHHH-----------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 143 MELLNEAIERGVTQNVV-TLIQLL-----------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 143 ~~~~~~m~~~g~~p~~~-t~~~l~-----------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
..++++..+....|... .|..+. +...+..+-|...+.++-..+.+.+++++|.+.|+...+. .|+
T Consensus 283 ~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~ 360 (398)
T PRK10747 283 QQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPD 360 (398)
T ss_pred HHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 99999988854333222 222221 1122333345566888889999999999999999999974 699
Q ss_pred HHHHHHHHHHhhcCC
Q 045820 211 RTSHDMLIKKLDQQP 225 (225)
Q Consensus 211 ~~~~~~ll~~~~~~g 225 (225)
..++..+-..+.+.|
T Consensus 361 ~~~~~~La~~~~~~g 375 (398)
T PRK10747 361 AYDYAWLADALDRLH 375 (398)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999888888887765
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.4e-09 Score=54.34 Aligned_cols=35 Identities=37% Similarity=0.673 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.6e-09 Score=54.00 Aligned_cols=34 Identities=47% Similarity=0.977 Sum_probs=32.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 157 (225)
.+||++|.+|++.|++++|.++|++|++.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999976
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.7e-09 Score=53.47 Aligned_cols=34 Identities=35% Similarity=0.618 Sum_probs=32.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 156 (225)
+.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999986
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.7e-09 Score=53.09 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC
Q 045820 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
+.+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999998
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-06 Score=73.32 Aligned_cols=190 Identities=16% Similarity=0.080 Sum_probs=136.4
Q ss_pred hhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 13 SVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
+..+-..+...|++++|+..+.+.... .+..+.. ....|++++|...|+...+.. +-+..+|..+-..+...
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIK 412 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 335556677889999999888763221 1112222 337899999999999887663 33577888999999999
Q ss_pred CCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 86 NEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 86 ~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
|++++|...|++. .+.|++++|...|++..+. .| +...|+.+-..+...|++++|...|
T Consensus 413 g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred CCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999998777 5679999999999998764 34 5678899999999999999999999
Q ss_pred HHHHHcCCCccHHH------HHH---HH----------HHhhc--CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 147 NEAIERGVTQNVVT------LIQ---LL----------QRLEM--GHIPR-TITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 147 ~~m~~~g~~p~~~t------~~~---l~----------~~~~~--~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
++..+..-..+... ++. +. ..++. ...|+ ...+..+...+.+.|++++|..+|++..+
T Consensus 491 ~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 491 DTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99876532211111 110 00 11111 12343 34678888899999999999999988876
Q ss_pred c
Q 045820 205 H 205 (225)
Q Consensus 205 ~ 205 (225)
.
T Consensus 571 l 571 (615)
T TIGR00990 571 L 571 (615)
T ss_pred H
Confidence 4
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.8e-06 Score=67.61 Aligned_cols=210 Identities=10% Similarity=0.051 Sum_probs=143.3
Q ss_pred HhhhcCCCCCChhhcchhhcCcchh----h--hHH--HHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSL----Q--AQR--FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~--l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 86 (225)
.......+.|++++|.+.+.+.... . ... ..-.+..|+++.|...++.+.+.. +-+..++..+...+.+.|
T Consensus 123 laA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 123 KAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSG 201 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHh
Confidence 4456678889999999988774221 1 111 112347999999999999999885 336678899999999999
Q ss_pred CHHHHHHHHHHHHhcCC-----------------HHHH-----HHHHHHHhhCCC---CCCHHhHHHHHHHHHhcCCHHH
Q 045820 87 EQDTAVKFFSNHLMVGR-----------------VEEA-----YEMLMNVKNDGL---KPDVYTYTAIMDGFCKVGRSNE 141 (225)
Q Consensus 87 ~~~~a~~~~~~~~~~g~-----------------~~~a-----~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~g~~~~ 141 (225)
+++.|.+++..+.+.+- ++.+ .+.+..+.+... +.+...+-.+...+...|+.++
T Consensus 202 d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~ 281 (409)
T TIGR00540 202 AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDS 281 (409)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHH
Confidence 99999999988843311 1111 113333332211 1277888999999999999999
Q ss_pred HHHHHHHHHHcCCCccHH---HHHHHH-----------HHhh--cCCCCCH---HHHHHHHHHHHccCcHHHHHHHHHHH
Q 045820 142 AMELLNEAIERGVTQNVV---TLIQLL-----------QRLE--MGHIPRT---ITFNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 142 a~~~~~~m~~~g~~p~~~---t~~~l~-----------~~~~--~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
|..++++..+..-..... .+.... +..+ ....|+. ....++-..+.+.|++++|.+.|+..
T Consensus 282 A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a 361 (409)
T TIGR00540 282 AQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV 361 (409)
T ss_pred HHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 999999998753322211 122111 1111 1223444 45567788889999999999999965
Q ss_pred HhcCCCCCHHHHHHHHHHhhcCC
Q 045820 203 YEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 203 ~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
......|+..++..+...+.+.|
T Consensus 362 ~a~~~~p~~~~~~~La~ll~~~g 384 (409)
T TIGR00540 362 AACKEQLDANDLAMAADAFDQAG 384 (409)
T ss_pred HHhhcCCCHHHHHHHHHHHHHcC
Confidence 55456799999888888877654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.8e-06 Score=74.46 Aligned_cols=186 Identities=13% Similarity=0.028 Sum_probs=125.1
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcch---hhhHHHHH---HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRS---LQAQRFVD---KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~l~~---~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
.+..+-.++.. +++.+|+..+.+-.. .....+.. ....|++++|...|+.+... .|+...+..+..++.+.
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~ 555 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAA 555 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHC
Confidence 33444444444 788888875544111 11222211 23789999999999987654 55556677778888999
Q ss_pred CCHHHHHHHHHHH---------------Hhc---CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 86 NEQDTAVKFFSNH---------------LMV---GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 86 ~~~~~a~~~~~~~---------------~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
|+.+.|...++.. ... |++++|...|++..+. .|+...|..+-..+.+.|+.++|+..++
T Consensus 556 Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 556 GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999988665 223 9999999999998864 5678889999999999999999999999
Q ss_pred HHHHcCCCccHHH-HHHHH-------------HHhhc--CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 148 EAIERGVTQNVVT-LIQLL-------------QRLEM--GHIP-RTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 148 ~m~~~g~~p~~~t-~~~l~-------------~~~~~--~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
+..+.. |+... ++.+- ..+.. ...| +...+..+-.++...|++++|...+++..+
T Consensus 634 ~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 634 AALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 988763 33222 22111 11111 1122 445666666777777777777777776664
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.3e-07 Score=72.33 Aligned_cols=136 Identities=19% Similarity=0.230 Sum_probs=59.9
Q ss_pred HhCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYE 109 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~ 109 (225)
+.++++++..+++...+. ..+.+...|..+-..+.+.|+.++|..++++. ...|+.+++.+
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~ 201 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEARE 201 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 445555555555554322 12334445555555555555555555555444 33455555555
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV 189 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~ 189 (225)
++....+.. +.|...+..+-.+|...|+.++|...|++..+.. +.|......+...+...
T Consensus 202 ~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-------------------p~d~~~~~~~a~~l~~~ 261 (280)
T PF13429_consen 202 ALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-------------------PDDPLWLLAYADALEQA 261 (280)
T ss_dssp HHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-------------------TT-HHHHHHHHHHHT--
T ss_pred HHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-------------------ccccccccccccccccc
Confidence 555544322 2233344555555555555555555555554432 14788888999999999
Q ss_pred CcHHHHHHHHHHHHh
Q 045820 190 GKIHKALLLLFLMYE 204 (225)
Q Consensus 190 g~~~~a~~~~~~m~~ 204 (225)
|+.++|.++.++..+
T Consensus 262 g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 262 GRKDEALRLRRQALR 276 (280)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 999999999877643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.8e-06 Score=63.38 Aligned_cols=118 Identities=10% Similarity=0.145 Sum_probs=93.9
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH---------------------
Q 045820 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--------------------- 98 (225)
Q Consensus 40 ~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------- 98 (225)
+|-.=++.+-+.+.++|.++|-+|.+.. +-+..+--+|=+.|-+.|.+|.|.++.+.+
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 3445566678899999999999998752 335556667888888899999999998777
Q ss_pred -HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 045820 99 -LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159 (225)
Q Consensus 99 -~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 159 (225)
-..|-+|.|+.+|..+.+.|. .-...---++..|-...+|++|.++-+++.+.+-++..+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~ 177 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV 177 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh
Confidence 668999999999999987552 234466778999999999999999999998887666544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.1e-07 Score=65.54 Aligned_cols=104 Identities=20% Similarity=0.238 Sum_probs=86.0
Q ss_pred CCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHH
Q 045820 120 KPDVYTYTAIMDGFCKV-----GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194 (225)
Q Consensus 120 ~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 194 (225)
..|-.+|..+++.|.+. |..+=....+..|.+.|+.-|..+|+.|++..-+|.-.....+.++..-|- .+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp--~Qq~c 121 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYP--RQQEC 121 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCc--HHHHH
Confidence 56888999999999765 678888888999999999999999999998887776555555555444333 45578
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 195 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
|++++++|...|+.||..|+..|++.|.+.+
T Consensus 122 ~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 122 AIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 9999999999999999999999999998864
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-05 Score=62.80 Aligned_cols=173 Identities=16% Similarity=0.106 Sum_probs=114.9
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCH------------------------
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV------------------------ 104 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~------------------------ 104 (225)
..|+.+.|..=.+++.+.+ +-+.........+|.+.|++..+..++..+.+.|-+
T Consensus 165 ~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 165 NRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred hCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 5566666666666665553 335566677777777777777777777666222111
Q ss_pred --HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH---------HHh---hc
Q 045820 105 --EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---------QRL---EM 170 (225)
Q Consensus 105 --~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~---------~~~---~~ 170 (225)
+.-...++...+ ..+-++..-.+++.-+.+.|+.++|.++..+-.+.+..|...++.--+ +.. -+
T Consensus 244 ~~~gL~~~W~~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 244 GSEGLKTWWKNQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred cchHHHHHHHhccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 111112222211 122345555677888899999999999999999998888844333322 111 12
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 171 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
...-+...+.+|=.-|.+++.|.+|.+.|+...+ .+|+..+|+.+-++|.+.|
T Consensus 323 ~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g 375 (400)
T COG3071 323 QHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLG 375 (400)
T ss_pred hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcC
Confidence 2233447888999999999999999999996554 6799999999999988765
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.6e-08 Score=48.49 Aligned_cols=31 Identities=42% Similarity=0.942 Sum_probs=29.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
+|||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999875
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.7e-06 Score=67.79 Aligned_cols=112 Identities=16% Similarity=0.113 Sum_probs=78.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHH---------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNH---------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFC 134 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~---------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~ 134 (225)
++.....+..++...|+.+.|..++++. ...++.+++.+..+...+. .| |...+-++-..|.
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLM 339 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH
Confidence 4444555566666666666666666555 3346666666666666543 33 4445666667777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 135 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
+.+++++|...|+...+. .|+..+|-.+...+.+.|+.++|.+++++-..
T Consensus 340 ~~~~~~~A~~~le~al~~--------------------~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQ--------------------RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HCCCHHHHHHHHHHHHhc--------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777777777776654 38999999999999999999999999997643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-05 Score=68.44 Aligned_cols=152 Identities=15% Similarity=0.043 Sum_probs=101.4
Q ss_pred CCHHHHHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 51 SPLKERIDIFNSIKKDG-TNW-SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
+++++|...|+...+.+ ..| ....|+.+-..+...|++++|...|+.. ...|++++|...
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46777888887776654 233 3445666677777778888888877665 456788888888
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHH-------------HHhh---cCCC
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN-VVTLIQLL-------------QRLE---MGHI 173 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l~-------------~~~~---~~~~ 173 (225)
|++..+.. +-+...|..+-..|...|++++|...|++..+.. |+ ...+..+- ..++ ....
T Consensus 388 ~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 388 FDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 88776542 2246677777778888888888888888777643 32 22222211 1111 1122
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
-+...|+.+-..+...|++++|...|+...+.
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34677888888888899999999999888764
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-07 Score=47.98 Aligned_cols=31 Identities=32% Similarity=0.601 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhcCC
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 207 (225)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999875
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.3e-06 Score=55.17 Aligned_cols=90 Identities=16% Similarity=0.231 Sum_probs=73.3
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045820 39 LQAQRFVDKIKASPLKERIDIFNSIKKDGT-NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND 117 (225)
Q Consensus 39 ~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~ 117 (225)
...+.+..++..+++...-.+|..+++.|+ .|+..+|+.++.+.++..--.. .-.+.+-..+.+|..|...
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~--------~ie~kl~~LLtvYqDiL~~ 98 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSE--------DIENKLTNLLTVYQDILSN 98 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccch--------hHHHHHHHHHHHHHHHHHh
Confidence 345567778889999999999999999999 9999999999999987542111 1123456788899999999
Q ss_pred CCCCCHHhHHHHHHHHHhc
Q 045820 118 GLKPDVYTYTAIMDGFCKV 136 (225)
Q Consensus 118 g~~p~~~~~~~ll~~~~~~ 136 (225)
+++|+..+||.++..+.+.
T Consensus 99 ~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 99 KLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred ccCCcHHHHHHHHHHHHHh
Confidence 9999999999999887653
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-05 Score=71.57 Aligned_cols=86 Identities=13% Similarity=-0.000 Sum_probs=45.8
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
+.|+.++|...|++..+.. +-+...+..+...|...|++++|+..++...+.. ..+...+
T Consensus 615 ~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-------------------p~~~~~~ 674 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-------------------NDSLNTQ 674 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-------------------CCChHHH
Confidence 3344444444444444321 1133444444444444444444444444433221 1234456
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
..+...+...|++++|.++++.+...
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 66677777888888888888888764
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.6e-06 Score=53.52 Aligned_cols=79 Identities=13% Similarity=0.189 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC--------cHHHHHH
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGV-TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG--------KIHKALL 197 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g--------~~~~a~~ 197 (225)
..-|..+...+++....-+|..+++.|+ . |++.+|+.++.+.++.. .+-+...
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~l------------------Psv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLt 90 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITL------------------PSVELYNKVLKSIAKRELDSEDIENKLTNLLT 90 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCC------------------CcHHHHHHHHHHHHHccccchhHHHHHHHHHH
Confidence 4456666666999999999999999999 6 66666666666665432 3456788
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 198 LLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 198 ~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
+++.|...+++|+..||+.++..+.+
T Consensus 91 vYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 91 VYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 99999999999999999999998765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.6e-05 Score=65.20 Aligned_cols=128 Identities=11% Similarity=0.030 Sum_probs=84.2
Q ss_pred CCCChhhcchhhcCcchh-----hhHHHHH--HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045820 22 RSPSAAESLDLKENPRSL-----QAQRFVD--KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94 (225)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~-----~~~~l~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 94 (225)
..+++++|...+++.... .....+. ....|++++|...|++..+.+ +-+...|..+-..+...|++++|...
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 445577777776653221 1212222 237789999999998887764 33456677788888888888888887
Q ss_pred HHHH------------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 95 FSNH------------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 95 ~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
++.. ...|++++|...+.+..+.. .| +...+..+-.++...|+.++|...+.++..
T Consensus 395 ~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 395 INECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 7665 34577777777777765432 23 334456666677777888888887776544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.5e-05 Score=64.70 Aligned_cols=132 Identities=14% Similarity=0.036 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHH
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLM 112 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~ 112 (225)
+++++|...+++..+.. +-+...|..+-..+...|++++|...|++. ...|++++|...++
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45789999999887764 336677888878888899999999998776 66799999999999
Q ss_pred HHhhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHccC
Q 045820 113 NVKNDGLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP-RTITFNNVIQALCGVG 190 (225)
Q Consensus 113 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p-~~~~~~~li~~~~~~g 190 (225)
+..+. .|+ ...+...+..+...|++++|...+.+..+..- | +...+..+-.++...|
T Consensus 397 ~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-------------------p~~~~~~~~la~~l~~~G 455 (553)
T PRK12370 397 ECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL-------------------QDNPILLSMQVMFLSLKG 455 (553)
T ss_pred HHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-------------------ccCHHHHHHHHHHHHhCC
Confidence 98764 343 22333445556678889999999888776532 3 2334566667777788
Q ss_pred cHHHHHHHHHHHHh
Q 045820 191 KIHKALLLLFLMYE 204 (225)
Q Consensus 191 ~~~~a~~~~~~m~~ 204 (225)
+.++|...++++..
T Consensus 456 ~~~eA~~~~~~~~~ 469 (553)
T PRK12370 456 KHELARKLTKEIST 469 (553)
T ss_pred CHHHHHHHHHHhhh
Confidence 88888888877654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=5e-05 Score=68.62 Aligned_cols=97 Identities=10% Similarity=0.011 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHH
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLM 112 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~ 112 (225)
|++++|...+++..+. .|+...|..+-.++.+.|+.++|...|++. ...|+.++|...|+
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444444444444433 233444444444444445555544444433 33444445544444
Q ss_pred HHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 113 NVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 113 ~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
+..+. .| +...+..+-.++.+.|++++|+..+++..+
T Consensus 668 ~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 668 RAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44432 22 333444444444455555555554444443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.7e-05 Score=62.92 Aligned_cols=52 Identities=13% Similarity=0.076 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHH-ccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 172 HIPRTITFNNVIQALC-GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 172 ~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
+.|+..-|..+|..|. +.|++.+|++++++..+ .++-|......|++.+..-
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccc
Confidence 5678888877775554 46888888888887654 4556777777777666543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-05 Score=66.80 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=117.6
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWS-VSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYE 109 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~ 109 (225)
..|+++.|++.+++-.+. .|+ ...||.|-+++-..|++++|.+.|... ...|.++.|..
T Consensus 298 eqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred ccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence 788999999999887765 444 456999999999999999999988766 56688888888
Q ss_pred HHHHHhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH--------HHHHH------HHHhhcC--C
Q 045820 110 MLMNVKNDGLKPDV-YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--------TLIQL------LQRLEMG--H 172 (225)
Q Consensus 110 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--------t~~~l------~~~~~~~--~ 172 (225)
+|....+ +.|.- ..+|.+-..|-+.|++++|...+++..+ ++|+-. ||.-+ ++++.+. +
T Consensus 376 ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 376 LYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 8887765 45543 4588888888888999999888888765 344321 22211 1333332 2
Q ss_pred CCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH-HHHHHHHH
Q 045820 173 IPR-TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR-TSHDMLIK 219 (225)
Q Consensus 173 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~ 219 (225)
.|. ....+.|-+.|-..|++.+|++-+++..+ ++||. ..|..++.
T Consensus 452 nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh 498 (966)
T KOG4626|consen 452 NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLH 498 (966)
T ss_pred CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHH
Confidence 343 35688899999999999999999999875 56764 34444443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.9e-05 Score=69.12 Aligned_cols=182 Identities=11% Similarity=0.033 Sum_probs=123.6
Q ss_pred hhhcCCCCCChhhcchhhcCcchhh-------hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 045820 16 LVDSPSRSPSAAESLDLKENPRSLQ-------AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88 (225)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 88 (225)
+...+...|++++|++.+++..... +.......+.|++++|...|++..+.. +-+...+..+...+...++.
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~ 545 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRD 545 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCH
Confidence 3445667888888888887733221 111112347899999999998887642 22344444444455667778
Q ss_pred HHHHHHHHHH----------------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHH
Q 045820 89 DTAVKFFSNH----------------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN 140 (225)
Q Consensus 89 ~~a~~~~~~~----------------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 140 (225)
++|...++.+ ...|+.++|..+++. .+.+...+..+-..+.+.|+++
T Consensus 546 ~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 546 RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHH
Confidence 7777766542 456788888888762 2345566777888889999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC-HHHHHHHHH
Q 045820 141 EAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS-RTSHDMLIK 219 (225)
Q Consensus 141 ~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 219 (225)
+|...|++..+..- .+...+..+...|...|+.++|.+.++...+. .|+ ..++..+-.
T Consensus 621 ~A~~~y~~al~~~P-------------------~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~ 679 (1157)
T PRK11447 621 AARAAYQRVLTREP-------------------GNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVAL 679 (1157)
T ss_pred HHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHH
Confidence 99999998887531 45778899999999999999999999987753 343 344444545
Q ss_pred HhhcC
Q 045820 220 KLDQQ 224 (225)
Q Consensus 220 ~~~~~ 224 (225)
++.+.
T Consensus 680 ~~~~~ 684 (1157)
T PRK11447 680 AWAAL 684 (1157)
T ss_pred HHHhC
Confidence 44443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00012 Score=55.44 Aligned_cols=171 Identities=13% Similarity=0.107 Sum_probs=103.1
Q ss_pred hhhcCCCCCChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCC-CC-ChhhHHHHHHHHHhcCCHHHHHH
Q 045820 16 LVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGT-NW-SVSDFNDLLMALVMLNEQDTAVK 93 (225)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~-~~-~~~~~~~li~~~~~~~~~~~a~~ 93 (225)
++.+|+...+.+.. ..-......-+......+..|+++.|...|++..+..- .| ...++..+-.++.+.|+++.|..
T Consensus 13 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~ 91 (235)
T TIGR03302 13 LLAGCSSKKKKEAD-PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIA 91 (235)
T ss_pred HHhhccCCcccccC-CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34455555333333 23333333334444445577777777777777655421 11 11345556666767777777777
Q ss_pred HHHHH---------------------H--------hcCCHHHHHHHHHHHhhCCCCCCH-HhH-----------------
Q 045820 94 FFSNH---------------------L--------MVGRVEEAYEMLMNVKNDGLKPDV-YTY----------------- 126 (225)
Q Consensus 94 ~~~~~---------------------~--------~~g~~~~a~~~~~~m~~~g~~p~~-~~~----------------- 126 (225)
.++.+ . ..|+.++|.+.|++..+. .|+. ..+
T Consensus 92 ~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 92 AADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred HHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 76665 0 115566777777776653 2321 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
-.+-..|.+.|++++|...+.+..+..-. -......+..+..++.+.|+.++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPD----------------TPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCC----------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 13445677889999999999888765310 0023568889999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.7e-05 Score=67.07 Aligned_cols=173 Identities=10% Similarity=0.001 Sum_probs=112.0
Q ss_pred cCCCCCChhhcchhhcCcchhhh------HH-HH-HHHHhCCHHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCC
Q 045820 19 SPSRSPSAAESLDLKENPRSLQA------QR-FV-DKIKASPLKERIDIFNSIKKDGTNW---SVSDFNDLLMALVMLNE 87 (225)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~------~~-l~-~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~~~ 87 (225)
.+...|++++|+..++++....- .. +. ..+..|++++|+..|+++.+..-.. ....+..+..++.+.|+
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 33455788888887777554421 01 11 2347888888888888876542111 13445666777778888
Q ss_pred HHHHHHHHHHH---------------------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 045820 88 QDTAVKFFSNH---------------------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134 (225)
Q Consensus 88 ~~~a~~~~~~~---------------------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 134 (225)
+++|..+++.+ ...|+.++|.++++++.... +-+...+..+...+.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 88887776655 33456677777777765531 224556666777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHH
Q 045820 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213 (225)
Q Consensus 135 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 213 (225)
+.|+.++|+..+++..+.. || ...+-.....+...|++++|..+++++++. .|+...
T Consensus 405 ~~g~~~~A~~~l~~al~l~--------------------Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~ 462 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLE--------------------PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPG 462 (765)
T ss_pred hcCCHHHHHHHHHHHHhhC--------------------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHH
Confidence 7777777777777666542 43 556667777888899999999999999873 354443
Q ss_pred H
Q 045820 214 H 214 (225)
Q Consensus 214 ~ 214 (225)
.
T Consensus 463 ~ 463 (765)
T PRK10049 463 V 463 (765)
T ss_pred H
Confidence 3
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.1e-05 Score=66.77 Aligned_cols=77 Identities=6% Similarity=-0.022 Sum_probs=49.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-----------------HHhhc-----CCCCCHHHHHHHHHHH
Q 045820 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEM-----GHIPRTITFNNVIQAL 186 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~-----~~~p~~~~~~~li~~~ 186 (225)
.+-++.+.|+..++..-++.++..|.+....+--.+. ..... ...++......|.-+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 4556667777777777777777666542222222222 11111 1123455568899999
Q ss_pred HccCcHHHHHHHHHHHHhc
Q 045820 187 CGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 187 ~~~g~~~~a~~~~~~m~~~ 205 (225)
...+++++|..+++.+.+.
T Consensus 378 ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HhcccHHHHHHHHHHHHhc
Confidence 9999999999999999873
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00015 Score=64.36 Aligned_cols=161 Identities=11% Similarity=0.051 Sum_probs=116.7
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHH------------------
Q 045820 39 LQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSV--SDFNDLLMALVMLNEQDTAVKFFSNH------------------ 98 (225)
Q Consensus 39 ~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~------------------ 98 (225)
..+...+...+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.+.|...+++.
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 4466777788999999999999988766 4443 234 8888888889999999988776
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|.++|+++.+.. +-+...+..+...|...++.++|+..+++..+.. |+...
T Consensus 113 ~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--------------------p~~~~ 171 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--------------------PTVQN 171 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--------------------cchHH
Confidence 35699999999999998753 2245666677888999999999999999887653 56555
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
+-.++..+...++..+|++.++++.+.. +-+...+..++.++.+.
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRN 216 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 6444444444566656899999988753 22455556665555544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.2e-05 Score=58.82 Aligned_cols=112 Identities=14% Similarity=0.166 Sum_probs=84.5
Q ss_pred hhhhHHHHHHH------HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--HhcCCHHHHHH
Q 045820 38 SLQAQRFVDKI------KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--LMVGRVEEAYE 109 (225)
Q Consensus 38 ~~~~~~l~~~~------~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--~~~g~~~~a~~ 109 (225)
..++..++..+ +.|+++-....+..|.+-|+.-|..+|+.||+.+=+ |.+- -..+|+.+ ---.+-+-|.+
T Consensus 47 K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 47 KATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred HHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhccCcHHHHHHHH
Confidence 33444455544 678888888999999999999999999999999976 4332 33344444 23456688999
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGR-SNEAMELLNEAIE 151 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~ 151 (225)
++++|+..|+.||..|+..+++.|++.+. ..+..++.-.|.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986 3444555555544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00018 Score=55.76 Aligned_cols=137 Identities=20% Similarity=0.278 Sum_probs=82.9
Q ss_pred HhhhcCCCCCChhhcchhhcC----cchhhhHH------HH-HHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 15 LLVDSPSRSPSAAESLDLKEN----PRSLQAQR------FV-DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~------l~-~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
.|=+-|-+.|..++|+++-.. |+-..-.. +- +++++|-++.|..+|..+.+.|. .-....-.|+..|-
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ 152 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHH
Confidence 444556677777777765443 22111111 11 23477888888888888776542 23445666777777
Q ss_pred hcCCHHHHHHHHHHH---------------------------------------------------------HhcCCHHH
Q 045820 84 MLNEQDTAVKFFSNH---------------------------------------------------------LMVGRVEE 106 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~---------------------------------------------------------~~~g~~~~ 106 (225)
...+|++|.++-+++ ...|+++.
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQK 232 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHH
Confidence 777777777765544 44566666
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 107 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
|.+.++...+.+..--..+-..+..+|...|+.++....+..+.+.
T Consensus 233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6666666665543333445566666666666666666666666554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00021 Score=59.69 Aligned_cols=210 Identities=15% Similarity=0.124 Sum_probs=138.2
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh----------hhHHHHH-----HHHhCCHHHHHHHHHHHHhc-----C-CC
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL----------QAQRFVD-----KIKASPLKERIDIFNSIKKD-----G-TN 69 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~l~~-----~~~~~~~~~a~~~~~~m~~~-----g-~~ 69 (225)
.+...|...|...|+++.|..++.+--.. .+..+++ ....+.+++|..+|+.+..- | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45557888999999999999988773322 1222222 12678999999999887432 2 12
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHHHHHHHHH--------------------------HhcCCHHHHHHHHHHHhhC---CC
Q 045820 70 W-SVSDFNDLLMALVMLNEQDTAVKFFSNH--------------------------LMVGRVEEAYEMLMNVKND---GL 119 (225)
Q Consensus 70 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------------~~~g~~~~a~~~~~~m~~~---g~ 119 (225)
| -..+++.|-.+|.+.|++++|...++.. ...+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 2344666777899999999888877555 6678888888888765431 12
Q ss_pred CCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCccH---HHHHHHH-----------------------
Q 045820 120 KPD----VYTYTAIMDGFCKVGRSNEAMELLNEAIERG----VTQNV---VTLIQLL----------------------- 165 (225)
Q Consensus 120 ~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g----~~p~~---~t~~~l~----------------------- 165 (225)
.++ ..+++.+-..|-+.|++++|++++++....- -.-+. ..++.+-
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 3568999999999999999999998876431 11111 1222221
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh------cCCCCCHHHHHHHHHH
Q 045820 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE------HGKIPSRTSHDMLIKK 220 (225)
Q Consensus 166 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------~g~~p~~~~~~~ll~~ 220 (225)
..+..+..-...+|..|...|...|++++|+++.+.... ....|+.........-
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLAD 500 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhH
Confidence 111112222345899999999999999999998877652 1355666655554433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.8e-05 Score=62.66 Aligned_cols=130 Identities=15% Similarity=0.234 Sum_probs=99.4
Q ss_pred HHHHHHh---cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHhHHHHHHHH
Q 045820 59 IFNSIKK---DGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND--GLKPDVYTYTAIMDGF 133 (225)
Q Consensus 59 ~~~~m~~---~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~ 133 (225)
++..|.+ .+.+.+......+++.+....+ ++.+..++.+.... ....-..|..++++.|
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~----------------~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~ 113 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDD----------------LDEVEDVLYKFRHSPNCSYLLPSTHHALVRQC 113 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhH----------------HHHHHHHHHHHHcCcccccccCccHHHHHHHH
Confidence 5555533 3556677778888887754444 45555555555543 2222334557999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHH
Q 045820 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213 (225)
Q Consensus 134 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 213 (225)
.+.|..+++..++..=...|+- ||..+||.||..+.+.|++..|.++..+|..+....+..|
T Consensus 114 l~~~~~~~~l~~L~n~~~yGiF------------------~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t 175 (429)
T PF10037_consen 114 LELGAEDELLELLKNRLQYGIF------------------PDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPST 175 (429)
T ss_pred HhcCCHHHHHHHHhChhhcccC------------------CChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchH
Confidence 9999999999999999999988 8999999999999999999999999999998888788888
Q ss_pred HHHHHHHhh
Q 045820 214 HDMLIKKLD 222 (225)
Q Consensus 214 ~~~ll~~~~ 222 (225)
+.--+.+|.
T Consensus 176 ~~L~l~~~~ 184 (429)
T PF10037_consen 176 QALALYSCY 184 (429)
T ss_pred HHHHHHHHH
Confidence 777666654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00058 Score=60.82 Aligned_cols=143 Identities=13% Similarity=-0.012 Sum_probs=106.4
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHH----------------------HhcCC
Q 045820 47 KIKASPLKERIDIFNSIKKDGTN-WSVSDFNDLLMALVMLNEQDTAVKFFSNH----------------------LMVGR 103 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~----------------------~~~g~ 103 (225)
.+..+++++|+..|+.+.+.+-+ |+. .-..+-.+|...|++++|...|+.+ ...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 35778999999999999887632 332 1222567898899999999888766 24478
Q ss_pred HHHHHHHHHHHhhCCC-----------CCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhh
Q 045820 104 VEEAYEMLMNVKNDGL-----------KPD---VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169 (225)
Q Consensus 104 ~~~a~~~~~~m~~~g~-----------~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~ 169 (225)
+++|..+++.+.+... .|+ ...+......+...|+.++|+.+++++....-
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P--------------- 390 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP--------------- 390 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------
Confidence 8888888888876421 122 22445667788888899999999888876532
Q ss_pred cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 170 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
-+...+..+...+...|++++|++.+++..+. .|+.
T Consensus 391 ----~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~ 426 (765)
T PRK10049 391 ----GNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRN 426 (765)
T ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCC
Confidence 45678889999999999999999999998874 4664
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00018 Score=59.24 Aligned_cols=32 Identities=9% Similarity=-0.084 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 172 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
..||...+..+...+.+.|+.++|.+++++-.
T Consensus 366 ~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 366 EQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34899999999999999999999999999854
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.4e-05 Score=59.71 Aligned_cols=131 Identities=19% Similarity=0.198 Sum_probs=85.7
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------------Hh-cCCHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------------LM-VGRVEEAY 108 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------~~-~g~~~~a~ 108 (225)
..|++++|++++..- -+.......+..|.+.+++|.|.+.++.| .. .+.+.+|.
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHH
Confidence 445566665554321 24445555556666666666666666555 11 24689999
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 045820 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG 188 (225)
Q Consensus 109 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~ 188 (225)
.+|+++.+. ..++..+.|.+..++...|++++|+.++.+..+..- -|..+...+|-+...
T Consensus 188 y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-------------------~~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 188 YIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-------------------NDPDTLANLIVCSLH 247 (290)
T ss_dssp HHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-------------------CCHHHHHHHHHHHHH
Confidence 999998764 467889999999999999999999999998764332 344566666777777
Q ss_pred cCcH-HHHHHHHHHHHhc
Q 045820 189 VGKI-HKALLLLFLMYEH 205 (225)
Q Consensus 189 ~g~~-~~a~~~~~~m~~~ 205 (225)
.|+. +.+.+++.++...
T Consensus 248 ~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 248 LGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp TT-TCHHHHHHHHHCHHH
T ss_pred hCCChhHHHHHHHHHHHh
Confidence 7766 6677888887753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.002 Score=50.69 Aligned_cols=164 Identities=16% Similarity=0.085 Sum_probs=114.3
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
+.|+.++|...|++..+.. +-+...|+.+-..+...|+++.|...|+.. ...|++++|.+.
T Consensus 76 ~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 76 SLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7899999999999887764 336788999999999999999999998777 557999999999
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH-H-----------HHhhcCCCC----
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL-L-----------QRLEMGHIP---- 174 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-~-----------~~~~~~~~p---- 174 (225)
|++..+. .|+..........+...++.++|...|.+..... .|+...+... + .....++.-
T Consensus 155 ~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l 231 (296)
T PRK11189 155 LLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGWNIVEFYLGKISEETLMERLKAGATDNTEL 231 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHH
Confidence 9998764 4543222222223455678999999997755332 2322222111 1 111112111
Q ss_pred ---CHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 045820 175 ---RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217 (225)
Q Consensus 175 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 217 (225)
....|..+-..+.+.|+.++|...|++..+.. .||..-+...
T Consensus 232 ~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~ 276 (296)
T PRK11189 232 AERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYA 276 (296)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHH
Confidence 23578889999999999999999999998754 3465555443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00017 Score=60.55 Aligned_cols=146 Identities=21% Similarity=0.177 Sum_probs=92.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHH--
Q 045820 69 NWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTA-- 128 (225)
Q Consensus 69 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-- 128 (225)
+-++.+|.++=+.|.-+++.+.|.+.|+.. .....+|.|...|.... ..|...||+
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwY 493 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWY 493 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHH
Confidence 446788999999999999999999999887 55667778887777655 567777766
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-------------HHhhcCCCC---CHHHHHHHHHHHHccCc
Q 045820 129 -IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-------------QRLEMGHIP---RTITFNNVIQALCGVGK 191 (225)
Q Consensus 129 -ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-------------~~~~~~~~p---~~~~~~~li~~~~~~g~ 191 (225)
+-..|.|.++++.|+.-|.+..+.+-. +.+..+.+- ++++.-+.. |.-.----...+...++
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 445678888999999888887765432 222111111 122222211 22222233344556677
Q ss_pred HHHHHHHHHHHHhcCCCCCHHH-HHHHHHHh
Q 045820 192 IHKALLLLFLMYEHGKIPSRTS-HDMLIKKL 221 (225)
Q Consensus 192 ~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~ 221 (225)
.++|...++++++ +.|+..+ |..+-+.|
T Consensus 573 ~~eal~~LEeLk~--~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 573 YVEALQELEELKE--LVPQESSVFALLGKIY 601 (638)
T ss_pred hHHHHHHHHHHHH--hCcchHHHHHHHHHHH
Confidence 8888888888876 4565544 33333333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00059 Score=55.41 Aligned_cols=204 Identities=11% Similarity=0.081 Sum_probs=128.8
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhhhH------HHHHHH--HhCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHh
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQAQ------RFVDKI--KASPLKERIDIFNSIKKDGT--NWSVSDFNDLLMALVM 84 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~l~~~~--~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~ 84 (225)
++..++.+-.+.+++++-.......++. ..+..+ ...+++.|..+|++++++.. --|..+|+.++..--.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 4444555555556665554443333221 122222 67899999999999988721 1277888888766544
Q ss_pred cCCHH-HHHHHHHHH--------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 85 LNEQD-TAVKFFSNH--------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 85 ~~~~~-~a~~~~~~~--------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
+..+. .|..+++-- +-.++.++|...|.+..+- .| ....|+.|-.-|..-.+...|..-++.
T Consensus 312 ~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 43332 233332111 5567788888888887763 34 456788888888888888888888888
Q ss_pred HHHcCCCccH-------HHHHHHH--------HHhhcCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHH
Q 045820 149 AIERGVTQNV-------VTLIQLL--------QRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212 (225)
Q Consensus 149 m~~~g~~p~~-------~t~~~l~--------~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 212 (225)
..+..-. |- .+|-++= -.....++ -|...|.+|-.+|.+.++.++|++-|+.....|-. +..
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~ 467 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS 467 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence 7654211 11 1222221 11122333 47889999999999999999999999998876633 567
Q ss_pred HHHHHHHHhh
Q 045820 213 SHDMLIKKLD 222 (225)
Q Consensus 213 ~~~~ll~~~~ 222 (225)
.+..|-+.|-
T Consensus 468 ~l~~LakLye 477 (559)
T KOG1155|consen 468 ALVRLAKLYE 477 (559)
T ss_pred HHHHHHHHHH
Confidence 7777766654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00086 Score=56.55 Aligned_cols=186 Identities=14% Similarity=0.151 Sum_probs=109.3
Q ss_pred hcCCCCCChhhcchhhcCcchh-----hhHHHHH--HHHhCCHHHHHHHHHHHHhcCCCCChhhHH-HHHHHHHhc----
Q 045820 18 DSPSRSPSAAESLDLKENPRSL-----QAQRFVD--KIKASPLKERIDIFNSIKKDGTNWSVSDFN-DLLMALVML---- 85 (225)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~-----~~~~l~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~---- 85 (225)
..+...|++++|++.+..-... ++..... .++.|+.++|..+|..+.+. .|+...|- .+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 4457789999999999773332 3332222 34889999999999999988 45555544 444444222
Q ss_pred -CCHHHHHHHHHHH--------------------------------------------------HhcCCHHHHHHHHHHH
Q 045820 86 -NEQDTAVKFFSNH--------------------------------------------------LMVGRVEEAYEMLMNV 114 (225)
Q Consensus 86 -~~~~~a~~~~~~~--------------------------------------------------~~~g~~~~a~~~~~~m 114 (225)
.+.+...++|+++ .......-..+++...
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 3567777888777 1122233333444443
Q ss_pred hhC----C----------CCCCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH-HHHH--H----------
Q 045820 115 KND----G----------LKPDVYTY--TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-LIQL--L---------- 165 (225)
Q Consensus 115 ~~~----g----------~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~l--~---------- 165 (225)
... | -.|+...| .-+-..|-..|++++|+..+++.++.. |+..- |..- |
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHH
Confidence 321 1 13444344 555667889999999999999888753 43221 1111 1
Q ss_pred -HHhh--cCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCC
Q 045820 166 -QRLE--MGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207 (225)
Q Consensus 166 -~~~~--~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 207 (225)
+..+ .... -|...=+--...+.++|++++|.+++....+.+.
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 1111 1111 2333444445555677777777777777766554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.3e-05 Score=62.84 Aligned_cols=189 Identities=12% Similarity=0.085 Sum_probs=135.5
Q ss_pred CCCC-chhhHhhhcCCCCCChhhcchhhcCcchhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 7 NSPT-PFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 7 ~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
.||. .....+...+...|...+|+..++++.- +.+.+.|+ ..|+.++|..+..+..+. +|++..|..+-+...+
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlem--w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEM--WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH--HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3444 3344777788899999999998887654 55555554 788999999998877763 8899999999998887
Q ss_pred cCCHHHHHHHHHHH----------------------------------------------HhcCCHHHHHHHHHHHhhCC
Q 045820 85 LNEQDTAVKFFSNH----------------------------------------------LMVGRVEEAYEMLMNVKNDG 118 (225)
Q Consensus 85 ~~~~~~a~~~~~~~----------------------------------------------~~~g~~~~a~~~~~~m~~~g 118 (225)
..-+++|.++++.. .+.+++..|.+.|.....
T Consensus 470 ~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt-- 547 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT-- 547 (777)
T ss_pred hHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--
Confidence 77788888887665 445555666666655553
Q ss_pred CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 045820 119 LKPDV-YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197 (225)
Q Consensus 119 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 197 (225)
..||- ..||.+-.+|.+.++-.+|...+.+..+... -+...|...+..-.+.|.+++|++
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-------------------~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-------------------QHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-------------------CCCeeeechhhhhhhcccHHHHHH
Confidence 35644 4588888888888888888888888777663 355677777888888999999999
Q ss_pred HHHHHHhc-CCCCCHHHHHHHHHH
Q 045820 198 LLFLMYEH-GKIPSRTSHDMLIKK 220 (225)
Q Consensus 198 ~~~~m~~~-g~~p~~~~~~~ll~~ 220 (225)
.+..+.+- .-.-|...-..++..
T Consensus 609 A~~rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 609 AYHRLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHHHHHHhhhhcccchhhHHHHHH
Confidence 98888652 111255555554443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0023 Score=50.99 Aligned_cols=163 Identities=11% Similarity=0.068 Sum_probs=129.4
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------------HhcCCHHHHH
Q 045820 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------------LMVGRVEEAY 108 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------~~~g~~~~a~ 108 (225)
+-.|++.+|.++..+-.+++-. ....|-.-..+--.-||.+.+-..+.+. ...|+.+.|.
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 3679999999998886666544 4445666667777779999999888777 6678889999
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH-------HHHHHHHH--------------
Q 045820 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-------TLIQLLQR-------------- 167 (225)
Q Consensus 109 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------t~~~l~~~-------------- 167 (225)
.-.++..+.+ +-.+........+|.+.|++.....+...|.+.|.--|.. +|+.+++-
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 8888888764 3367789999999999999999999999999999766554 77777721
Q ss_pred --hhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHH
Q 045820 168 --LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212 (225)
Q Consensus 168 --~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 212 (225)
.....+-+...-.+++.-+.+.|+.++|.++.++-.+++.-|+..
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~ 299 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC 299 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH
Confidence 122344567778889999999999999999999999988877743
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.5e-05 Score=60.65 Aligned_cols=110 Identities=23% Similarity=0.318 Sum_probs=84.6
Q ss_pred hhHHHHHHH-HhCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 045820 40 QAQRFVDKI-KASPLKERIDIFNSIKKD--GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116 (225)
Q Consensus 40 ~~~~l~~~~-~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~ 116 (225)
.+..+++.+ ...+++.+..++-..+.. ....-..|.+++|..|.+.|.. +.+..++..=..
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~----------------~~~l~~L~n~~~ 131 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAE----------------DELLELLKNRLQ 131 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCH----------------HHHHHHHhChhh
Confidence 344566666 456688888888777765 3444455667999999665554 555555555567
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 117 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
.|+-||.++||.+|+.+.+.|++..|.++...|...+...+..|+..-+
T Consensus 132 yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l 180 (429)
T PF10037_consen 132 YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALAL 180 (429)
T ss_pred cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 8999999999999999999999999999999999888887877776665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00081 Score=56.71 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=72.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CccHHHHHHHHHHhhcC-----
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-TQNVVTLIQLLQRLEMG----- 171 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~l~~~~~~~----- 171 (225)
...|+++.|...|++..+. .|+ ...||.+-.|+-..|++.+|++++.+.....- -+|+..--.-+.+....
T Consensus 297 yeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred eccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHH
Confidence 5568888888888888763 564 45799999999999999999999988776432 12221111112111111
Q ss_pred --------CCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 172 --------HIPR-TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 172 --------~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
+-|. ....|.|-.-|-+.|+.++|+.-+++..+ +.|+.
T Consensus 375 ~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f 421 (966)
T KOG4626|consen 375 RLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF 421 (966)
T ss_pred HHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH
Confidence 1122 23567778888888888888888888775 56654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00018 Score=62.93 Aligned_cols=105 Identities=14% Similarity=0.112 Sum_probs=80.1
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
..+..++|+++|.+..+.. +-|...-|-+-..++..|++++|..||.+.++... -+..+|
T Consensus 624 ~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-------------------~~~dv~ 683 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-------------------DFEDVW 683 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-------------------hCCcee
Confidence 5577899999999888753 44888889999999999999999999999998764 233567
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhcC
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEH-GKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~ 224 (225)
-.+-++|+..|++..|+++|+...+. +-.-+......|-+++.+.
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 77777888888888888888776653 4455666677777666554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00083 Score=46.93 Aligned_cols=95 Identities=9% Similarity=-0.073 Sum_probs=76.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|...|....... +.+...|..+-.++.+.|++++|...|++..+..- .+...
T Consensus 35 ~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-------------------~~~~a 94 (144)
T PRK15359 35 WQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-------------------SHPEP 94 (144)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------------------CCcHH
Confidence 45577777777777776542 34778899999999999999999999999997642 57788
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHH
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 215 (225)
+..+-.++...|+.++|...|+...+. .|+...+.
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 999999999999999999999999874 46554443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00031 Score=53.63 Aligned_cols=104 Identities=20% Similarity=0.214 Sum_probs=83.1
Q ss_pred CCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHH
Q 045820 120 KPDVYTYTAIMDGFCKV-----GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194 (225)
Q Consensus 120 ~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 194 (225)
+-|-.+|-+.+..|... ++++-....+..|++.|+.-|..+|+.|+...-+|.-.-...|..+.-.|=+.. +=
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ--~C 141 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQ--NC 141 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhh--hH
Confidence 34666677777777554 567778888899999999999999999998887776555566666666665544 45
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 195 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
+++++++|...|+.||-.+=..|+.+|.|+|
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 7899999999999999999999999999875
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.3e-05 Score=57.88 Aligned_cols=185 Identities=14% Similarity=0.064 Sum_probs=105.4
Q ss_pred HhhhcCCCCCChhhcchhhcC---cchhhhHHHHHHHHh-CCHHHHHHHHHHHHhcCCCCChhhHHH-HHHHHHhcCCHH
Q 045820 15 LLVDSPSRSPSAAESLDLKEN---PRSLQAQRFVDKIKA-SPLKERIDIFNSIKKDGTNWSVSDFND-LLMALVMLNEQD 89 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~-li~~~~~~~~~~ 89 (225)
.+..++...|+++.++.-... +.......+...+.. .+-+.++.-+++.......++..++.. .-..+...|+++
T Consensus 40 ~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~ 119 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE 119 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence 555666666776665544432 222223334444433 334444444444433333322223322 223455568888
Q ss_pred HHHHHHHHH-------------HhcCCHHHHHHHHHHHhhCCCCCCHHh---HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 90 TAVKFFSNH-------------LMVGRVEEAYEMLMNVKNDGLKPDVYT---YTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 90 ~a~~~~~~~-------------~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.|.+++..- .+.++++.|.+.++.|.+.. .|... ..+.++.+...+.+++|..+|+++...
T Consensus 120 ~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~- 196 (290)
T PF04733_consen 120 EALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK- 196 (290)
T ss_dssp HHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-
T ss_pred HHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-
Confidence 777664332 77899999999999998642 33322 333344443345789999999997654
Q ss_pred CCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 154 ~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
.. ++..+.|.+..++...|++++|.+++.+..+.. +-|..|...++-+.
T Consensus 197 ~~------------------~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 197 FG------------------STPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCS 245 (290)
T ss_dssp S--------------------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHH
T ss_pred cC------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHH
Confidence 22 778889999999999999999999999987543 22444555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00016 Score=49.18 Aligned_cols=97 Identities=12% Similarity=0.052 Sum_probs=73.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
|..++.++|-++++.|+.+....+++.. .|+.++..--..- --......|+..+..+++.+|+.+|++..|.++.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~~~~~-~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKKKEGD-YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCccccCc-cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4678899999999999999999998643 3433222100000 112234569999999999999999999999999999
Q ss_pred HHh-cCCCCCHHHHHHHHHHh
Q 045820 202 MYE-HGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 202 m~~-~g~~p~~~~~~~ll~~~ 221 (225)
..+ .++..+..+|..|++-.
T Consensus 78 fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 78 FSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHHcCCCCCHHHHHHHHHHH
Confidence 986 48998999999998754
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0021 Score=48.76 Aligned_cols=127 Identities=15% Similarity=0.161 Sum_probs=92.8
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHHhhCCCCCCHH
Q 045820 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------LMVGRVEEAYEMLMNVKNDGLKPDVY 124 (225)
Q Consensus 58 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------~~~g~~~~a~~~~~~m~~~g~~p~~~ 124 (225)
++.+.+......-+...-..-...|++.+++++|++..... .+..+.+-|.+.+++|.+- -+..
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 44555555544444444444455688889999998876443 6778889999999999862 3445
Q ss_pred hHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 125 TYTAIMDGFC----KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 125 ~~~~ll~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
|.+-+-.+|. ..+.+.+|+-+|++|.+.-. |+..+-|...-++...|++++|..+++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~-------------------~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTP-------------------PTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccC-------------------CChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 6655555554 44679999999999987432 888888999999999999999999999
Q ss_pred HHHhcC
Q 045820 201 LMYEHG 206 (225)
Q Consensus 201 ~m~~~g 206 (225)
+.....
T Consensus 232 eaL~kd 237 (299)
T KOG3081|consen 232 EALDKD 237 (299)
T ss_pred HHHhcc
Confidence 988653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00076 Score=52.62 Aligned_cols=104 Identities=12% Similarity=0.074 Sum_probs=84.3
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
+.|-+.+|...|..-.+. .|-+.||-.|-.+|.+..+.+.|+.+|.+- -..++.++|.++
T Consensus 235 rLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~l 312 (478)
T KOG1129|consen 235 RLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQL 312 (478)
T ss_pred HhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHH
Confidence 788888898888776666 567778888999999999999998888655 345788888888
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 155 (225)
|++..+.. +.++....++-.+|.-.++.+-|++.++++.+.|+.
T Consensus 313 Yk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~ 356 (478)
T KOG1129|consen 313 YKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ 356 (478)
T ss_pred HHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC
Confidence 88887642 346777788888888889999999999999999985
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0057 Score=45.47 Aligned_cols=112 Identities=17% Similarity=0.049 Sum_probs=90.7
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcC
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVG 102 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g 102 (225)
...-+..+..|+...|..-++.-.++. +-+..+|..+-..|-+.|+.+.|.+-|+.. +..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 344556779999999999999888774 336778999999999999999999999777 8889
Q ss_pred CHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 103 RVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.+++|...|++....-.-+ -..||..+--+..+.|+.+.|+..|.+-.+..
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 9999999999987632222 34578787778889999999999999887654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0045 Score=48.49 Aligned_cols=187 Identities=8% Similarity=-0.045 Sum_probs=137.1
Q ss_pred HhhhcCCCCCChhhcchhhcCc-----chhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhH-HHHHHHHHhcCC
Q 045820 15 LLVDSPSRSPSAAESLDLKENP-----RSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDF-NDLLMALVMLNE 87 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~~~ 87 (225)
.+-++|.|-|.+.+|.+.+++- ...++-.+-..+ +-.++..|+.+|.+-.+. .|-.+|| .-+-..+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHh
Confidence 6788999999999999877662 233344444444 789999999999887765 4555554 445566667789
Q ss_pred HHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 88 QDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 88 ~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
.+.|.++|+.. .-.++.+-|+..|.++.+.|+ -+...|+.+--+|.-.+.++-++-.|.+.
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 99999999888 335889999999999999996 46667888777888888999999999888
Q ss_pred HHcCCCccHH---HHHHHH------------HHh---hcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 150 IERGVTQNVV---TLIQLL------------QRL---EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 150 ~~~g~~p~~~---t~~~l~------------~~~---~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
...-..|+.. =||.-. +.+ -..-.-+.+.+|.|----.+.|++++|..+++....
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 7765544332 122211 211 122224567888888888899999999999988764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0051 Score=45.42 Aligned_cols=131 Identities=8% Similarity=0.113 Sum_probs=90.4
Q ss_pred hCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHH
Q 045820 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTA 128 (225)
Q Consensus 50 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ 128 (225)
.++.+++...++...+.. +.|...|..+-..|...|+ +++|...|++..+. .| +...+..
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~----------------~~~A~~a~~~Al~l--~P~~~~~~~~ 112 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND----------------YDNALLAYRQALQL--RGENAELYAA 112 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 445566666666555443 4477778888778855555 45555555555543 34 5666777
Q ss_pred HHHH-HHhcCC--HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 129 IMDG-FCKVGR--SNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 129 ll~~-~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
+-.+ +...|+ .++|..++++..+..- -+...+..+-..+.+.|++++|...|+.+.+.
T Consensus 113 lA~aL~~~~g~~~~~~A~~~l~~al~~dP-------------------~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 113 LATVLYYQAGQHMTPQTREMIDKALALDA-------------------NEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCC-------------------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7666 467676 5999999999998753 36778888889999999999999999999874
Q ss_pred CCCCCHHHHHHHHHH
Q 045820 206 GKIPSRTSHDMLIKK 220 (225)
Q Consensus 206 g~~p~~~~~~~ll~~ 220 (225)
..|+..-+..+ .+
T Consensus 174 -~~~~~~r~~~i-~~ 186 (198)
T PRK10370 174 -NSPRVNRTQLV-ES 186 (198)
T ss_pred -CCCCccHHHHH-HH
Confidence 35565554444 44
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0049 Score=46.79 Aligned_cols=120 Identities=16% Similarity=0.175 Sum_probs=80.2
Q ss_pred cCCCCCChhhcchhhcCcchhhhHHHHHH--HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 19 SPSRSPSAAESLDLKENPRSLQAQRFVDK--IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96 (225)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~l~~~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 96 (225)
.|.+.|++++|++............+-.. ++..+++.|...+++|.+-. +..|.+-|-.+|.+.-
T Consensus 117 i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la---------- 183 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLA---------- 183 (299)
T ss_pred HhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHh----------
Confidence 35666666666666665333333333332 25666666666666665432 4445555555554431
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 97 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
...+.+.+|+-+|++|-++ ..|+..+-|-...++...|++++|+.++++.....-
T Consensus 184 --~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 184 --TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred --ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 3345688999999999764 578999999999999999999999999999987654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0024 Score=51.97 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=60.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHH
Q 045820 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN 180 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~ 180 (225)
.++-.+|.+++++.... .+-|....+.-...+.+.++++.|+.+.+++.+..- -+..+|.
T Consensus 213 ~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP-------------------~~f~~W~ 272 (395)
T PF09295_consen 213 MNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSP-------------------SEFETWY 272 (395)
T ss_pred cCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc-------------------hhHHHHH
Confidence 34555666666655542 123555666666777888888888888888887541 2456999
Q ss_pred HHHHHHHccCcHHHHHHHHHHHH
Q 045820 181 NVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 181 ~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
.|..+|.+.|+++.|...++.+-
T Consensus 273 ~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 273 QLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999988774
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0074 Score=42.12 Aligned_cols=126 Identities=13% Similarity=0.108 Sum_probs=83.1
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHH--HHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLL--MALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g 118 (225)
|..++..+..++...+...++.+.+..-.-.......|. ..+ ...|++++|...|+...+..
T Consensus 15 y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~----------------~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 15 YEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAA----------------YEQGDYDEAKAALEKALANA 78 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH----------------HHCCCHHHHHHHHHHHHhhC
Confidence 455666667899999988999988773221122222222 333 45567777777777777655
Q ss_pred CCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 045820 119 LKPDV--YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196 (225)
Q Consensus 119 ~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 196 (225)
..|+. ...-.+-..+...|++++|+..++...... .....+...-..|...|+.++|.
T Consensus 79 ~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--------------------~~~~~~~~~Gdi~~~~g~~~~A~ 138 (145)
T PF09976_consen 79 PDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--------------------FKALAAELLGDIYLAQGDYDEAR 138 (145)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--------------------hHHHHHHHHHHHHHHCCCHHHHH
Confidence 33332 233446778888999999999997633222 23445666778899999999999
Q ss_pred HHHHHH
Q 045820 197 LLLFLM 202 (225)
Q Consensus 197 ~~~~~m 202 (225)
..|+.-
T Consensus 139 ~~y~~A 144 (145)
T PF09976_consen 139 AAYQKA 144 (145)
T ss_pred HHHHHh
Confidence 998763
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0018 Score=44.43 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=75.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|.+.|......+ +.+...|..+-..+.+.|++++|..++++..+..- .+..+
T Consensus 28 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-------------------~~~~~ 87 (135)
T TIGR02552 28 YQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-------------------DDPRP 87 (135)
T ss_pred HHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------------CChHH
Confidence 34456666666666666543 34677888899999999999999999998877642 46677
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 219 (225)
+..+-..|...|++++|...|+...+. .|+...+..+..
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 126 (135)
T TIGR02552 88 YFHAAECLLALGEPESALKALDLAIEI--CGENPEYSELKE 126 (135)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHHHH
Confidence 888888999999999999999998874 466666554433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0017 Score=52.81 Aligned_cols=101 Identities=17% Similarity=0.265 Sum_probs=83.6
Q ss_pred HHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCH
Q 045820 44 FVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRV 104 (225)
Q Consensus 44 l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~ 104 (225)
++..+ ..++++.|..+|+++.+.. |+ ....+...+...++-.+|.+++.+. .+.++.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 44444 5688999999999999874 44 4556888888888888888887666 678999
Q ss_pred HHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 105 EEAYEMLMNVKNDGLKPDV-YTYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
+.|+++.++..+ ..|+. .+|..+..+|.+.|+++.|+..++.+.
T Consensus 251 ~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999987 46755 589999999999999999999998875
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0069 Score=49.71 Aligned_cols=133 Identities=9% Similarity=0.070 Sum_probs=106.8
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
..+++..|.++|++-.... ..+...|-..+.+=.++..+..|..+++.. -..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5678899999999887665 447888998999999999999999988776 557999999999
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG 190 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g 190 (225)
|++..+ -.|+...|++.|+-=.+-..++.|..++++..-. +|++.+|--...--.++|
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--------------------HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--------------------HPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--------------------cccHHHHHHHHHHHHhcC
Confidence 999886 4899999999999999999999999999998753 255566655555555666
Q ss_pred cHHHHHHHHHHHHh
Q 045820 191 KIHKALLLLFLMYE 204 (225)
Q Consensus 191 ~~~~a~~~~~~m~~ 204 (225)
++..|..+|....+
T Consensus 222 ~~~~aR~VyerAie 235 (677)
T KOG1915|consen 222 NVALARSVYERAIE 235 (677)
T ss_pred cHHHHHHHHHHHHH
Confidence 66666666665554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0016 Score=44.32 Aligned_cols=91 Identities=16% Similarity=0.126 Sum_probs=68.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNH---LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
|..++.++|.++++.|+++....+++.. ...|...... .-......|+..+..+++.+|+..+++..|.++.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~----~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd 76 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGD----YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVD 76 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCc----cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4678899999999999999999988777 1111110000 12345678999999999999999999999999999
Q ss_pred HHH-HcCCCccHHHHHHHH
Q 045820 148 EAI-ERGVTQNVVTLIQLL 165 (225)
Q Consensus 148 ~m~-~~g~~p~~~t~~~l~ 165 (225)
... ..++..+..+|..|+
T Consensus 77 ~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 77 FFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred HHHHHcCCCCCHHHHHHHH
Confidence 987 467775555555555
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.023 Score=44.81 Aligned_cols=102 Identities=18% Similarity=0.066 Sum_probs=78.2
Q ss_pred hCCHHHHHHHHHHHHhcC-CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHH
Q 045820 50 ASPLKERIDIFNSIKKDG-TNWS--VSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAY 108 (225)
Q Consensus 50 ~~~~~~a~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~ 108 (225)
.++.+.++.-+.++.... ..|+ ...|..+-..+.+.|+.+.|...|++. ...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456677777777777542 2222 345777777888999999999888776 6679999999
Q ss_pred HHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 109 EMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 109 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..|++..+. .| +..+|..+-.++...|++++|...|++..+..
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999998763 45 45677888888899999999999999888653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00024 Score=44.65 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHHHhhCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 101 VGRVEEAYEMLMNVKNDGL-KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
.|+++.|..+|+++.+... .++...+-.+-.+|.+.|++++|..++++ .+.+. .+....
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-------------------~~~~~~ 61 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-------------------SNPDIH 61 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-------------------CHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-------------------CCHHHH
Confidence 5788999999999887533 22444555589999999999999999988 33221 122333
Q ss_pred HHHHHHHHccCcHHHHHHHHHH
Q 045820 180 NNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~ 201 (225)
-.+..+|.+.|++++|++++++
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhc
Confidence 4557889999999999999875
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.029 Score=45.16 Aligned_cols=139 Identities=11% Similarity=0.035 Sum_probs=93.3
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHH---HHHHHHhcCCHHHHHHHHHHH------------------HhcCCHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFND---LLMALVMLNEQDTAVKFFSNH------------------LMVGRVE 105 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~ 105 (225)
....|++++|..++++..+.. +-+...+.. ........+..+.+.+.+... ...|+++
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 131 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYD 131 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHH
Confidence 447899999999998877652 334444442 111112234444444443211 5678889
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC--HHHHHHHH
Q 045820 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR--TITFNNVI 183 (225)
Q Consensus 106 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~--~~~~~~li 183 (225)
+|...+++..+.. +.+...+..+-..|...|++++|...+++.....-. .|+ ...|-.+.
T Consensus 132 ~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----------------~~~~~~~~~~~la 193 (355)
T cd05804 132 RAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----------------SSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----------------CcchhHHHHHHHH
Confidence 9999998887743 234567788888888999999999998887654211 022 23456778
Q ss_pred HHHHccCcHHHHHHHHHHHHh
Q 045820 184 QALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..+...|+.++|..++++...
T Consensus 194 ~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 194 LFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHCCCHHHHHHHHHHHhc
Confidence 889999999999999999864
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0045 Score=50.86 Aligned_cols=182 Identities=14% Similarity=0.081 Sum_probs=122.6
Q ss_pred CCCCCChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-
Q 045820 20 PSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH- 98 (225)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~- 98 (225)
.....++++++.+.......-+..-.-++...+.++.+..|+.-.+.+ +-|+.+|..--..+.-.++++.|..=|++.
T Consensus 343 ~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555444432222222447788888888888776654 225666766666666666666666666554
Q ss_pred -----------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----c
Q 045820 99 -----------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-----Q 156 (225)
Q Consensus 99 -----------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-----p 156 (225)
.+.+.++++...|++.+.+ ++-....||..-..+...+++++|.+.|+..+...-. .
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v 500 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV 500 (606)
T ss_pred hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc
Confidence 6778999999999998864 4446778999999999999999999999987754211 1
Q ss_pred cHHH--------------HHHHHHHhhcCCCCCH---HHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 157 NVVT--------------LIQLLQRLEMGHIPRT---ITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 157 ~~~t--------------~~~l~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
+..+ ++..+.++++-++.|. ..|-.|-..-.+.|+.++|+++|++-.
T Consensus 501 ~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1111 1222255555555554 468888888899999999999999764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0075 Score=42.07 Aligned_cols=113 Identities=18% Similarity=0.157 Sum_probs=80.6
Q ss_pred HHhCCHHHHHHHHHHHHhc--C-CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 045820 48 IKASPLKERIDIFNSIKKD--G-TNWSV--SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD 122 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~--g-~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 122 (225)
...++.+.+...+++.... | +-++. ..|..-.....+..-.+....+.......|++++|..+...+.... +-|
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~ 95 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD-PYD 95 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCC
Confidence 3567888898888887654 2 33342 3577777777777767777777777788999999999999998743 348
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIE-----RGVTQNVVTL 161 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~ 161 (225)
...|-.+|.+|...|+...|.++|+++.+ .|+.|+..|-
T Consensus 96 E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 96 EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 88999999999999999999999988743 4888766543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.017 Score=47.32 Aligned_cols=134 Identities=16% Similarity=0.121 Sum_probs=107.0
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
-.++.++|...|++-.+.+ +-....|+.+=.-|..-.+...|.+-++.. ...+...-|+-.
T Consensus 342 lr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyY 420 (559)
T KOG1155|consen 342 LRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYY 420 (559)
T ss_pred HHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHH
Confidence 4578899999998877664 225566888888899888888888888766 334556666777
Q ss_pred HHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc
Q 045820 111 LMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV 189 (225)
Q Consensus 111 ~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~ 189 (225)
|.+... .+| |...|.++-.+|.+.++.++|..+|......|- .+...+..|-..|-+.
T Consensus 421 fqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-------------------te~~~l~~LakLye~l 479 (559)
T KOG1155|consen 421 FQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-------------------TEGSALVRLAKLYEEL 479 (559)
T ss_pred HHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-------------------cchHHHHHHHHHHHHH
Confidence 776654 466 889999999999999999999999999988764 3457788888999999
Q ss_pred CcHHHHHHHHHHHHh
Q 045820 190 GKIHKALLLLFLMYE 204 (225)
Q Consensus 190 g~~~~a~~~~~~m~~ 204 (225)
++.++|.+.|+...+
T Consensus 480 ~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYVE 494 (559)
T ss_pred HhHHHHHHHHHHHHH
Confidence 999999888887765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.062 Score=47.39 Aligned_cols=165 Identities=12% Similarity=0.081 Sum_probs=115.6
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHH
Q 045820 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYE 109 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~ 109 (225)
...|+.++|..++.+..+.. +.+...|-+|-..|-..|+.+++...+-.. .+.|.++.|.-
T Consensus 150 farg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 36699999999999988774 557888999999999999999888765332 67788999999
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH---------------------HHh
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---------------------QRL 168 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~---------------------~~~ 168 (225)
+|.+..+.. +++...+--=...|-+.|+...|.+.|.++....-..|..-+-.++ ...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999988753 3444444444678999999999999999988654322222222222 111
Q ss_pred -hcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHH
Q 045820 169 -EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214 (225)
Q Consensus 169 -~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 214 (225)
..+-..+...++.++..|.+..+++.|......+.....++|..-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~ 354 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW 354 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh
Confidence 1123345566778888888888888888877777765555554433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.03 Score=46.04 Aligned_cols=143 Identities=14% Similarity=0.120 Sum_probs=76.9
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLK 120 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~ 120 (225)
|-.-+..+..|++++|+..++.+.+. .+-|+.-+......+.+.++.++|.+ .++++.+. .
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e----------------~~~kal~l--~ 370 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIE----------------RLKKALAL--D 370 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHH----------------HHHHHHhc--C
Confidence 44455666889999999999998877 23355555666667755565555544 44444442 3
Q ss_pred CC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 045820 121 PD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199 (225)
Q Consensus 121 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 199 (225)
|+ ....-.+-.+|.+.|+..+|..++++-.... +-|+..|..|-+.++.-- -....-.+--.+|...|+++.|+..+
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g-~~~~a~~A~AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELG-NRAEALLARAEGYALAGRLEQAIIFL 448 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhC-chHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 43 3334445566666666666666666655432 223333333332222111 11122223334445555566666666
Q ss_pred HHHHh
Q 045820 200 FLMYE 204 (225)
Q Consensus 200 ~~m~~ 204 (225)
....+
T Consensus 449 ~~A~~ 453 (484)
T COG4783 449 MRASQ 453 (484)
T ss_pred HHHHH
Confidence 55554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.011 Score=49.31 Aligned_cols=179 Identities=15% Similarity=0.076 Sum_probs=126.1
Q ss_pred CCCCCChhhcchhhcCcchh------hhHHHHHHH-HhCCHHHHHHHHHHHHhc--C-CCCChhhHHHHHHHHHhcCCHH
Q 045820 20 PSRSPSAAESLDLKENPRSL------QAQRFVDKI-KASPLKERIDIFNSIKKD--G-TNWSVSDFNDLLMALVMLNEQD 89 (225)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~------~~~~l~~~~-~~~~~~~a~~~~~~m~~~--g-~~~~~~~~~~li~~~~~~~~~~ 89 (225)
|.-.|.+.+|.+.+.+-... +|-.+-+.+ -.+..+.|...+..--+. | ..|.. | +---|.+.+.++
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L--Y--lgmey~~t~n~k 397 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL--Y--LGMEYMRTNNLK 397 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH--H--HHHHHHHhccHH
Confidence 44458888999888773322 122233333 456677777766543322 2 23333 2 222466677888
Q ss_pred HHHHHHHHH------------------HhcCCHHHHHHHHHHHhh----CCC-C-CCHHhHHHHHHHHHhcCCHHHHHHH
Q 045820 90 TAVKFFSNH------------------LMVGRVEEAYEMLMNVKN----DGL-K-PDVYTYTAIMDGFCKVGRSNEAMEL 145 (225)
Q Consensus 90 ~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~----~g~-~-p~~~~~~~ll~~~~~~g~~~~a~~~ 145 (225)
.|.++|.+. ...+.+.+|..+|..... .+- + .-..+++.+-.+|.+.+.+++|...
T Consensus 398 LAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 398 LAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 888887666 456788888888887652 111 1 1345688899999999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 146 LNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 146 ~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
+++.....- .|..++.++--.|...|+++.|++.|.+-. .+.||..+-..++..+..
T Consensus 478 ~q~aL~l~~-------------------k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 478 YQKALLLSP-------------------KDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHcCC-------------------CchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 999887643 588999999999999999999999999877 478999888888876543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0061 Score=51.59 Aligned_cols=172 Identities=15% Similarity=0.116 Sum_probs=113.4
Q ss_pred CCCchhhHhhhcCCCCCChhhcchhhcCcchhh----hHHHH--H-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHH--
Q 045820 8 SPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQ----AQRFV--D-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDL-- 78 (225)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~l~--~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-- 78 (225)
..+.++-.+=++|+-.++.+.|++.|.+.-... |.-.+ + .+....++.|...|+.-. .+|+..||+.
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYG 494 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYG 494 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHh
Confidence 344555577778888888888888887633222 22111 1 235556677776665443 4566666653
Q ss_pred -HHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHh-HHHHHHHHHhcCC
Q 045820 79 -LMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYT-YTAIMDGFCKVGR 138 (225)
Q Consensus 79 -i~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~ 138 (225)
--.|.+.++++.|.-.|+.. -+.|+.++|+++|++..-...+ |+.. |.. ...+.-.++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~-~~il~~~~~ 572 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR-ASILFSLGR 572 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH-HHHHHhhcc
Confidence 44577788888887777666 5567888888888876643322 3333 443 445666777
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 139 SNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 139 ~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
+++|+..++++++.- |+ ...|..+-..|.+.|+.+.|..-|-.+.+-
T Consensus 573 ~~eal~~LEeLk~~v--------------------P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 573 YVEALQELEELKELV--------------------PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hHHHHHHHHHHHHhC--------------------cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 888888888887742 44 456777778899999999999888888764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.027 Score=49.56 Aligned_cols=113 Identities=11% Similarity=-0.004 Sum_probs=76.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMD 131 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~ 131 (225)
+...+-.|-....+.|..++|..+++.. .+.+++++|...+++..+. .| +....+.+-.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHH
Confidence 3444555555555555555555555444 5567777777777777664 45 4455677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 132 GFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 132 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
++.+.|++++|..+|++....+- -+..++..+-.++-..|+.++|...|+...+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p-------------------~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHP-------------------EFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCC-------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888888888888888887331 2356777777778888888888888887765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.042 Score=48.37 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
++..|.-+..+|...|++.+|+.+|..+...-.--+...|-.+-.+|-.
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 4567888889999999999999999998875333345666666655543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0031 Score=48.77 Aligned_cols=136 Identities=16% Similarity=0.125 Sum_probs=84.5
Q ss_pred HhhhcCCCCCChhhcchhhcCc-----chhhhHH--HHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--c
Q 045820 15 LLVDSPSRSPSAAESLDLKENP-----RSLQAQR--FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM--L 85 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~--l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~ 85 (225)
.|-.+|-+..++.+|...+.+. +...|.. .-..++++.+.+|+++...|.+. |+...-..-+.+-.+ .
T Consensus 49 lLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse 125 (459)
T KOG4340|consen 49 LLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSE 125 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhccc
Confidence 4444555555555555555442 2222221 11234677777777777766543 233322222333222 3
Q ss_pred CCHHHHHHHHHHH----------------HhcCCHHHHHHHHHHHhh-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 86 NEQDTAVKFFSNH----------------LMVGRVEEAYEMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 86 ~~~~~a~~~~~~~----------------~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
+|+..+..+.++. .+.|+.+.|.+-|....+ .|..| ...||.-+ ++-+.|+++.|++...+
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISE 203 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 5666666666665 678999999999999876 55544 55898877 55567889999999999
Q ss_pred HHHcCCC
Q 045820 149 AIERGVT 155 (225)
Q Consensus 149 m~~~g~~ 155 (225)
.++.|++
T Consensus 204 IieRG~r 210 (459)
T KOG4340|consen 204 IIERGIR 210 (459)
T ss_pred HHHhhhh
Confidence 9998875
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.016 Score=39.56 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=66.0
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
.+..|++++|...|+.....+ +.+...|..+-..+.+.|++ ++|...|++..+.+ +.+...+
T Consensus 27 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~----------------~~A~~~~~~~~~~~-p~~~~~~ 88 (135)
T TIGR02552 27 LYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEY----------------EEAIDAYALAAALD-PDDPRPY 88 (135)
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhcC-CCChHHH
Confidence 458899999999999987764 34677777787778555555 55555555554432 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+-..|...|++++|...|++..+..
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 777889999999999999999888753
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0074 Score=37.43 Aligned_cols=86 Identities=22% Similarity=0.250 Sum_probs=65.9
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
..|++++|...|.+..+.. +.+...+..+...+...+++++|...++...+... .+..++
T Consensus 12 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------------------~~~~~~ 71 (100)
T cd00189 12 KLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-------------------DNAKAY 71 (100)
T ss_pred HHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------------cchhHH
Confidence 3466677777777766532 22446788888899999999999999999887643 344678
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
..+...+...|+.++|...+....+.
T Consensus 72 ~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 72 YNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 88889999999999999999887653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.023 Score=39.60 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=55.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
.+...++..+...|++++|..+...+....- .|...|..+|.+|...|+..+|.++|+.+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-------------------~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDP-------------------YDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST-------------------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-------------------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3556677888899999999999999987643 578899999999999999999999999885
Q ss_pred h-----cCCCCCHHHHHH
Q 045820 204 E-----HGKIPSRTSHDM 216 (225)
Q Consensus 204 ~-----~g~~p~~~~~~~ 216 (225)
+ -|+.|+..+-..
T Consensus 124 ~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 124 RRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHS----HHHHHH
T ss_pred HHHHHHhCcCcCHHHHHH
Confidence 3 399999877543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0086 Score=48.46 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=80.7
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|...+++..+..- .+...
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-------------------~~~~a 72 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-------------------SLAKA 72 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------------------CCHHH
Confidence 46689999999999988643 23667788888999999999999999999987642 35677
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
|..+-.+|...|++++|...|++..+. .|+......++.-|
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 888889999999999999999999863 46666655555444
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.007 Score=46.89 Aligned_cols=103 Identities=16% Similarity=0.077 Sum_probs=69.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCC-------------CC---------------HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLK-------------PD---------------VYTYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~-------------p~---------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
.+.|+.+.|++...++.++|++ || +..+|.-...+-+.|+++.|.+-+.+|.
T Consensus 189 y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmP 268 (459)
T KOG4340|consen 189 YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMP 268 (459)
T ss_pred HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCC
Confidence 3556666677666666665443 22 2234444445567889999999999887
Q ss_pred -HcCCCccHHHHHHHHHHh--------------hcCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 151 -ERGVTQNVVTLIQLLQRL--------------EMGHI-PRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 151 -~~g~~p~~~t~~~l~~~~--------------~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
+.....|++|...+.-+- -.++. -..+||..++--||++.-++-|.+++.+
T Consensus 269 PRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 269 PRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 455677888887665110 11122 3468999999999999999999888765
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0025 Score=52.27 Aligned_cols=138 Identities=16% Similarity=0.136 Sum_probs=102.8
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhhhH---HHH-HH---HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQAQ---RFV-DK---IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~l~-~~---~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
+.|+.--..+.-.+++++|..-|++-....-+ +.+ .+ +|.+.++++...|++-++. ++--+..||-.-..+.
T Consensus 395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILT 473 (606)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHh
Confidence 34443333344456677777777764333222 122 22 3899999999999998877 6667888999999999
Q ss_pred hcCCHHHHHHHHHHH-------------------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcC
Q 045820 84 MLNEQDTAVKFFSNH-------------------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVG 137 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~-------------------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 137 (225)
..+++++|.+.|+.. -=.+++..|..++.+..+- .| ....|-.|-..-.+.|
T Consensus 474 DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 474 DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRG 551 (606)
T ss_pred hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHh
Confidence 999999999999776 1137888999998887763 34 5678999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 045820 138 RSNEAMELLNEAIE 151 (225)
Q Consensus 138 ~~~~a~~~~~~m~~ 151 (225)
+.++|.++|++-..
T Consensus 552 ~i~eAielFEksa~ 565 (606)
T KOG0547|consen 552 KIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0067 Score=47.39 Aligned_cols=144 Identities=12% Similarity=0.142 Sum_probs=93.6
Q ss_pred hhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045820 40 QAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118 (225)
Q Consensus 40 ~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g 118 (225)
.|..++..+ +.+..+.|..+|.+.++.+ ..+..+|-..-..-- ...++.+.|.++|+...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~---------------~~~~d~~~A~~Ife~glk~- 65 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEY---------------YCNKDPKRARKIFERGLKK- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHH---------------HTCS-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHH---------------HhCCCHHHHHHHHHHHHHH-
Confidence 345556665 6777999999999988543 223333332222211 1234555577777776543
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHccCcHHHHHH
Q 045820 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALL 197 (225)
Q Consensus 119 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~ 197 (225)
+..+..-|..-++-+.+.++.+.|..+|++.... +.++ . ....|...+.--.+.|+.+.+.+
T Consensus 66 f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~----------------~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 66 FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKE----------------KQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCH----------------HHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCch----------------hHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4457778999999999999999999999998865 3100 1 23589999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHH
Q 045820 198 LLFLMYEHGKIPSRTSHDMLIK 219 (225)
Q Consensus 198 ~~~~m~~~g~~p~~~~~~~ll~ 219 (225)
+.+.+.+. .|+......+++
T Consensus 129 v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 129 VEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHHHHHH--hhhhhHHHHHHH
Confidence 99988874 455444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.031 Score=45.81 Aligned_cols=119 Identities=8% Similarity=0.106 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHH
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLM 112 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~ 112 (225)
-+...|++++.+.... ++-|+.+.+.|-+.|-+.|+-..|.+.+=+. ....-++++...|+
T Consensus 572 ed~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred hCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4445555555443322 4557777888888888888888887764322 45566788888888
Q ss_pred HHhhCCCCCCHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCc
Q 045820 113 NVKNDGLKPDVYTYTAIMDGF-CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK 191 (225)
Q Consensus 113 ~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~ 191 (225)
+.. -+.|+..-|-.|+..| .+.|++++|++++.+.... ++ -|....-.|++-+...|-
T Consensus 651 kaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fp------------------edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 651 KAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FP------------------EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-Cc------------------cchHHHHHHHHHhccccc
Confidence 654 3689999999888766 5679999999999988754 32 456666666666666553
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.017 Score=38.28 Aligned_cols=92 Identities=12% Similarity=0.052 Sum_probs=66.8
Q ss_pred HhcCCHHHHHHHHHHHhhCCCC-C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLK-P-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~ 176 (225)
.+.|++++|.+.|.++.+.... + ....+..+..++.+.|+++.|...|++.....-. . ....
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~--------------~~~~ 76 (119)
T TIGR02795 13 LKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK--S--------------PKAP 76 (119)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC--C--------------Cccc
Confidence 4556677777777777653211 1 2345667889999999999999999998864311 0 0124
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
..+..+..++.+.|+.++|.+.++++.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 567777888899999999999999999763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.065 Score=44.31 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=36.2
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
..|++..|.++|++..+- .|+...|++.|+.=.+...++.|..+++..
T Consensus 153 ~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERF 200 (677)
T ss_pred HhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567788888888776544 778888888888877777777777777665
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.048 Score=41.15 Aligned_cols=153 Identities=14% Similarity=0.017 Sum_probs=87.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHH---------------------HhcCCHHHHHHHHHHHhhCCCC-CCH-HhHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNH---------------------LMVGRVEEAYEMLMNVKNDGLK-PDV-YTYT 127 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~---------------------~~~g~~~~a~~~~~~m~~~g~~-p~~-~~~~ 127 (225)
....+-.+...+.+.|+++.|...|+++ ...|++++|...++++.+.... |.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4455666667777788888888777655 4567888888888887653211 111 1333
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 045820 128 AIMDGFCKV--------GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199 (225)
Q Consensus 128 ~ll~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 199 (225)
.+-.++.+. |+.++|...++...+.... +......+.......... ......+-..|.+.|++++|...+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRL-AGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHH
Confidence 333444433 6677788888877754221 111111111110000000 011124556788899999999999
Q ss_pred HHHHhcC--CCCCHHHHHHHHHHhhcCC
Q 045820 200 FLMYEHG--KIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 200 ~~m~~~g--~~p~~~~~~~ll~~~~~~g 225 (225)
++..+.. -......+..+..++.+.|
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg 217 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLKLG 217 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence 9998752 1223466777777766544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.052 Score=41.15 Aligned_cols=136 Identities=16% Similarity=0.191 Sum_probs=96.9
Q ss_pred HhCCHHHHHHHHHHHHh---cC-CCCChhh-HHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHH
Q 045820 49 KASPLKERIDIFNSIKK---DG-TNWSVSD-FNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVE 105 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~---~g-~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~ 105 (225)
...+.++.++++.++.. +| ..++..+ |--++-+....|+.+.|...++.+ -..|.++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 45778888888887753 24 4555544 566777777788888888887776 4468888
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 045820 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQA 185 (225)
Q Consensus 106 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~ 185 (225)
+|.++++.+.+.. +.|..+|--=+-..--.|+--+|.+-+.+..+.= ..|...|--+-.-
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-------------------~~D~EAW~eLaei 163 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-------------------MNDQEAWHELAEI 163 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-------------------cCcHHHHHHHHHH
Confidence 8888888887654 3466666554545545555556666665555432 3788999999999
Q ss_pred HHccCcHHHHHHHHHHHHh
Q 045820 186 LCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 186 ~~~~g~~~~a~~~~~~m~~ 204 (225)
|...|++++|.-.++++.-
T Consensus 164 Y~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 164 YLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHhHhHHHHHHHHHHHHHH
Confidence 9999999999999999875
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.031 Score=42.32 Aligned_cols=119 Identities=16% Similarity=0.111 Sum_probs=85.9
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHH
Q 045820 46 DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVY 124 (225)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ 124 (225)
..++.|++..|+..|++...- -++|...|+.+=-+|.+.|+++.|..-|.+ ..+ +.| +..
T Consensus 109 ~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~q----------------Al~--L~~~~p~ 169 (257)
T COG5010 109 NQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQ----------------ALE--LAPNEPS 169 (257)
T ss_pred HHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHH----------------HHH--hccCCch
Confidence 356888899998888877654 367888888888888776666665554443 222 233 455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
.+|.+--.|.-.|+.++|+.++......+. -|...-..+...-...|++++|.++-..-
T Consensus 170 ~~nNlgms~~L~gd~~~A~~lll~a~l~~~-------------------ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 170 IANNLGMSLLLRGDLEDAETLLLPAYLSPA-------------------ADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-------------------CchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 677777788888888888888888877654 36677777888888888888888775543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.032 Score=49.58 Aligned_cols=152 Identities=15% Similarity=0.108 Sum_probs=110.0
Q ss_pred hCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHH
Q 045820 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEML 111 (225)
Q Consensus 50 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~ 111 (225)
.+..++|+.+|.+..+.. +.|...=|-+--.++..|+++.|..+|.+. ...|++..|.++|
T Consensus 625 kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 456777888888777663 447777777777788888888888888777 5678888899998
Q ss_pred HHHhh-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh------hcCCCCCHHHHHHHHH
Q 045820 112 MNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------EMGHIPRTITFNNVIQ 184 (225)
Q Consensus 112 ~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~------~~~~~p~~~~~~~li~ 184 (225)
+...+ .+-.-+....+.|-.+|-+.|.+.+|.+.+.........-..+-||..+.+. ....+++..- +..
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ee---v~~ 780 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEE---VLE 780 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHH---HHH
Confidence 88654 4444577889999999999999999999998888776666667888777222 2222233322 222
Q ss_pred HHHccCcHHHHHHHHHHHHhcCCC
Q 045820 185 ALCGVGKIHKALLLLFLMYEHGKI 208 (225)
Q Consensus 185 ~~~~~g~~~~a~~~~~~m~~~g~~ 208 (225)
..+..+.|.++|.+|...+-+
T Consensus 781 ---a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 781 ---AVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred ---HHHHHHHHHHHHHHHHhcCCC
Confidence 235578999999999876543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.056 Score=40.39 Aligned_cols=179 Identities=14% Similarity=0.029 Sum_probs=135.0
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhh-----hHHHHHH-H-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQ-----AQRFVDK-I-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~l~~~-~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 87 (225)
.|--+|.+.|+...|...+++..... ...++.. + +.|+.+.|.+-|+.-.+.. +-+-.+.|..=.-+|..|.
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 56678999999999988887743332 2222222 2 8899999999999877663 2266677888888899999
Q ss_pred HHHHHHHHHHH--------------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 88 QDTAVKFFSNH--------------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 88 ~~~a~~~~~~~--------------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
++.|...|+.. .+.|+.+.|.+.|.+-.+.. | ...+.-.+....-+.|++..|...+
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHHHHH
Confidence 99999999887 77899999999999987743 3 3456777888899999999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 045820 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217 (225)
Q Consensus 147 ~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 217 (225)
+.....+. ++..+.-..|.---..|+.+.+-++=..+.+. -|...-|..+
T Consensus 197 ~~~~~~~~-------------------~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f 246 (250)
T COG3063 197 ERYQQRGG-------------------AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTF 246 (250)
T ss_pred HHHHhccc-------------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence 99888765 55666666666667788888887777776653 4555544443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.028 Score=39.24 Aligned_cols=89 Identities=15% Similarity=0.050 Sum_probs=68.1
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|...|+...... +.+...|..+-.++.+.|++ ++|...|++..... +.+..++
T Consensus 34 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~----------------~~A~~~y~~Al~l~-p~~~~a~ 95 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEY----------------TTAINFYGHALMLD-ASHPEPV 95 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhH----------------HHHHHHHHHHHhcC-CCCcHHH
Confidence 348899999999999987664 34777788888888555554 55555555555432 3477888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+-.++.+.|+.++|...|+...+..
T Consensus 96 ~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 96 YQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888999999999999999999988754
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.073 Score=43.90 Aligned_cols=104 Identities=22% Similarity=0.289 Sum_probs=76.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC-H
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR-T 176 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~-~ 176 (225)
...|+.++|+..++.+... .| |+.-+......+.+.++..+|.+.++++...- |+ .
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--------------------P~~~ 374 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--------------------PNSP 374 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------------CCcc
Confidence 4568999999999998764 45 66677788899999999999999999998753 33 3
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
..+-.+-.+|.+.|++.+|+.+++..... .+-|...|..|-++|.++|
T Consensus 375 ~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 375 LLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhC
Confidence 44455556677777777777777766543 3446677777777776655
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0028 Score=37.81 Aligned_cols=64 Identities=25% Similarity=0.262 Sum_probs=52.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHH
Q 045820 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213 (225)
Q Consensus 134 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 213 (225)
.+.|++++|..+|+++.+..- -+...+-.+..+|.+.|++++|..+++.+... .|+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~ 60 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-------------------DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPE 60 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-------------------TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHH
Confidence 468999999999999987642 36778888999999999999999999999875 477666
Q ss_pred HHHHH
Q 045820 214 HDMLI 218 (225)
Q Consensus 214 ~~~ll 218 (225)
|..++
T Consensus 61 ~~~l~ 65 (68)
T PF14559_consen 61 YQQLL 65 (68)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
... |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.011 Score=54.31 Aligned_cols=130 Identities=13% Similarity=0.096 Sum_probs=103.4
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--------------------HhcCCHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--------------------LMVGRVEEAY 108 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------~~~g~~~~a~ 108 (225)
+....++|.++++.|.+. +.-...+|......+.+.++-+.|..++... .+.|+.+.+.
T Consensus 1542 k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGR 1620 (1710)
T KOG1070|consen 1542 KSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGR 1620 (1710)
T ss_pred HhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhH
Confidence 788999999999999766 2357788999999999999999998888665 7889999999
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 045820 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG 188 (225)
Q Consensus 109 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~ 188 (225)
.+|+...... +--+..|+..|+.=.++|+.+.+..+|++....++.|-- --..|.-.+..--+
T Consensus 1621 tlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk----------------mKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1621 TLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK----------------MKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH----------------hHHHHHHHHHHHHh
Confidence 9999998753 235668999999999999999999999999998876321 12355555555555
Q ss_pred cCcHHHHH
Q 045820 189 VGKIHKAL 196 (225)
Q Consensus 189 ~g~~~~a~ 196 (225)
+|+-+.++
T Consensus 1684 ~Gde~~vE 1691 (1710)
T KOG1070|consen 1684 HGDEKNVE 1691 (1710)
T ss_pred cCchhhHH
Confidence 66644333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.061 Score=47.39 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=92.2
Q ss_pred HhCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNW-SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYE 109 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~ 109 (225)
+.|..++|..+++...+. .| +...+..+...+.+.+++++|...++.. .+.|++++|..
T Consensus 98 ~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred HcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHH
Confidence 789999999999999877 44 5556888999999999999999998877 77899999999
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
+|++....+ +-+..++...-.++-+.|+.++|...|++..+.- .|.+.-|+-.+
T Consensus 176 ~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 176 CFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 999999732 2247788899999999999999999999988642 33334444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.017 Score=45.18 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=89.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHH----Hhc-CCHHHHHHHHHHHhh----CCCCCC--HHhHHHHHHHHHhcCCHH
Q 045820 72 VSDFNDLLMALVMLNEQDTAVKFFSNH----LMV-GRVEEAYEMLMNVKN----DGLKPD--VYTYTAIMDGFCKVGRSN 140 (225)
Q Consensus 72 ~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~-g~~~~a~~~~~~m~~----~g~~p~--~~~~~~ll~~~~~~g~~~ 140 (225)
...|...+..|.+.|+++.|-.++..+ -.. |++++|.+.|.+..+ .| .+. ...+.-+...+.+.|+++
T Consensus 94 i~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 94 IECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHH
Confidence 445777888899999999998888877 334 799999999988654 34 222 345677888999999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHHhc--CCCCC--HHHHH
Q 045820 141 EAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYEH--GKIPS--RTSHD 215 (225)
Q Consensus 141 ~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~--~~~~~ 215 (225)
+|..+|++........+. .+.++. .|-..+-++...||...|...+++.... ++..+ .....
T Consensus 173 ~A~~~~e~~~~~~l~~~l-------------~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNL-------------LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp HHHHHHHHHHHTCCCHCT-------------TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccc-------------cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 999999998875443110 012222 2334445666778999999999988753 33323 35556
Q ss_pred HHHHHhh
Q 045820 216 MLIKKLD 222 (225)
Q Consensus 216 ~ll~~~~ 222 (225)
.||.+|-
T Consensus 240 ~l~~A~~ 246 (282)
T PF14938_consen 240 DLLEAYE 246 (282)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.043 Score=37.35 Aligned_cols=135 Identities=15% Similarity=0.174 Sum_probs=95.2
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------HhcCCHHHHHHHHHHHhhCCCC
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------LMVGRVEEAYEMLMNVKNDGLK 120 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------~~~g~~~~a~~~~~~m~~~g~~ 120 (225)
.+-.|.+++..++......+. +..-||-+|--....-+=+.+.++++.. ..+|.+.....++..+-
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n----- 83 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN----- 83 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT-----
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc-----
Confidence 346789999999988776542 5555777777777777777788888777 66788888887776543
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 121 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
.+..-.+.-++...+.|+-+.-.++..++.+.+- ++....-.+-.+|.+.|+..++-++++
T Consensus 84 ~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~-------------------~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 84 KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEE-------------------INPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp ---HHHHHHHHHHHHTT-HHHHHHHHHHH------------------------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccC-------------------CCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 2455678889999999999999999999876443 777888889999999999999999999
Q ss_pred HHHhcCCC
Q 045820 201 LMYEHGKI 208 (225)
Q Consensus 201 ~m~~~g~~ 208 (225)
+..+.|++
T Consensus 145 ~ACekG~k 152 (161)
T PF09205_consen 145 EACEKGLK 152 (161)
T ss_dssp HHHHTT-H
T ss_pred HHHHhchH
Confidence 99999864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.057 Score=45.56 Aligned_cols=147 Identities=17% Similarity=0.158 Sum_probs=78.1
Q ss_pred HhCCHHHHHHHHHHHHhc-----CC-CCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 045820 49 KASPLKERIDIFNSIKKD-----GT-NWSVSDF-NDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP 121 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~-----g~-~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p 121 (225)
..|+++.|..++++-.+. |. .|.+.+. +.+-..|...+++++|..+|+++ +.+++...-..-+.
T Consensus 211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A---------L~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEA---------LTIREEVFGEDHPA 281 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH---------HHHHHHhcCCCCHH
Confidence 889999999999865433 31 2222222 22445667778888887777655 22222222111111
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-ccHHHHH---HHH------------------HHhhcCCCC
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIER-----GVT-QNVVTLI---QLL------------------QRLEMGHIP 174 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~~-p~~~t~~---~l~------------------~~~~~~~~p 174 (225)
-..+++.|-.+|.+.|++++|...+++..+. |.. |...+.. +++ +....-+.+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 2223444444555555555554444433211 110 1111000 000 111111112
Q ss_pred ----CHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 175 ----RTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 175 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
-..+|+.|-..|-..|++++|.+++++.+.
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 246899999999999999999999998864
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.14 Score=47.60 Aligned_cols=164 Identities=17% Similarity=0.119 Sum_probs=111.2
Q ss_pred HHHhCCHHHHHHHHHHHHhc-CCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHH-----------------HhcCCHH
Q 045820 47 KIKASPLKERIDIFNSIKKD-GTN---WSVSDFNDLLMALVMLNEQDTAVKFFSNH-----------------LMVGRVE 105 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~-g~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~-----------------~~~g~~~ 105 (225)
.+..++.++|..++++-... +++ --...|.++++.-...|.-+...++|++. .+.+..+
T Consensus 1468 ~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~ 1547 (1710)
T KOG1070|consen 1468 HLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKND 1547 (1710)
T ss_pred HhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcch
Confidence 34778888888888776543 221 13345777777777777777777777776 4456778
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-H-HhhcCC-----------
Q 045820 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-Q-RLEMGH----------- 172 (225)
Q Consensus 106 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-~-~~~~~~----------- 172 (225)
+|.++|+.|.++ +.-....|...+..+.++.+-+.|..++.+..+.--+-...-+..-. + ++..|-
T Consensus 1548 ~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgl 1626 (1710)
T KOG1070|consen 1548 EADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGL 1626 (1710)
T ss_pred hHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHH
Confidence 888888888653 22456678888888888888888888888776542221122111111 1 111111
Q ss_pred ----CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 173 ----IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 173 ----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
.--...|+..|+.-.++|+.+.+.++|++.+..++.|-.
T Consensus 1627 l~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1627 LSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 113457999999999999999999999999998887754
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.039 Score=38.47 Aligned_cols=119 Identities=14% Similarity=0.148 Sum_probs=76.6
Q ss_pred HHHHHHHHHHH---HhcCCHHHHHHHHHHHhhCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 045820 88 QDTAVKFFSNH---LMVGRVEEAYEMLMNVKNDGLKPD---VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161 (225)
Q Consensus 88 ~~~a~~~~~~~---~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 161 (225)
.+.+..+|..+ ...++...+...++.+.+.. +.+ ....=.+-..+...|++++|...|+........|+.
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l--- 83 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL--- 83 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH---
Confidence 34455555555 34688888888888887753 122 222333557888999999999999999987632111
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 162 ~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
-....-.+...+...|++++|...++......+ ....+...=+.|.++|
T Consensus 84 -------------~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 84 -------------KPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQG 132 (145)
T ss_pred -------------HHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCC
Confidence 112344567888889999999999977443333 3334445555555544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.006 Score=46.83 Aligned_cols=101 Identities=13% Similarity=0.106 Sum_probs=74.0
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD--TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
+.++++-....++.|++-|+..|..+|+.||+.+=+..-+. --.++|-.. -.+-+-+.+++++|+..|+.||-.+-
T Consensus 84 ~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e 161 (406)
T KOG3941|consen 84 GRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIE 161 (406)
T ss_pred ccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhC--chhhhHHHHHHHHHHHcCCCCchHHH
Confidence 45667777778899999999999999999999986654322 112233222 22335688999999999999999999
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHH
Q 045820 127 TAIMDGFCKVGRS-NEAMELLNEAIE 151 (225)
Q Consensus 127 ~~ll~~~~~~g~~-~~a~~~~~~m~~ 151 (225)
..++++|++.+-. .+..++.-.|.+
T Consensus 162 ~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 162 DILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHhccccccHHHHHHHHHhhhh
Confidence 9999999999853 344445444543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.19 Score=43.17 Aligned_cols=175 Identities=10% Similarity=0.003 Sum_probs=101.8
Q ss_pred hhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHH-hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCH
Q 045820 26 AAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIK-KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV 104 (225)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~-~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~ 104 (225)
++.++-++++|+..-..-+--.++.+++......|+.-. ..-+.--..+|...|.-.-..+-.
T Consensus 91 ~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lP---------------- 154 (835)
T KOG2047|consen 91 FERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLP---------------- 154 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCCh----------------
Confidence 455666666776665555555567777777777776543 333444555677666666444444
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCccHHHHHHHHHHh----------
Q 045820 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER------GVTQNVVTLIQLLQRL---------- 168 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~l~~~~---------- 168 (225)
+.+.+++++-.+ .++..-+-.|.-+++.+++++|-+.+...... ..+.+...|.-+.+..
T Consensus 155 ets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sl 230 (835)
T KOG2047|consen 155 ETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSL 230 (835)
T ss_pred HHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhccc
Confidence 444444444442 23333455566666666666665555544322 1122333333333221
Q ss_pred ------hcCC--CCCH--HHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 045820 169 ------EMGH--IPRT--ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 169 ------~~~~--~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 222 (225)
..|+ -+|. ..|++|..-|.+.|.+++|-+++++-+..- .+..-|+.+.++|+
T Consensus 231 nvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 231 NVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYA 292 (835)
T ss_pred CHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHH
Confidence 1111 1332 369999999999999999999999988753 34555667777765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.021 Score=45.33 Aligned_cols=109 Identities=13% Similarity=0.174 Sum_probs=57.4
Q ss_pred chhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcC-------CHHHHHHHHHHH---------
Q 045820 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA--LVMLN-------EQDTAVKFFSNH--------- 98 (225)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~~-------~~~~a~~~~~~~--------- 98 (225)
++...+.++..++.+++++|..+.+++. +.++.-| ++.+ ++..| ++.-|.+.|+-.
T Consensus 285 PEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Ey--ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDT 358 (557)
T KOG3785|consen 285 PEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEY--ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDT 358 (557)
T ss_pred hHhhhhheeeecccccHHHHHHHHhhcC----CCChHHH--HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccc
Confidence 3334445555667788888877765543 1122222 2222 12222 244555555444
Q ss_pred -----------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 99 -----------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 99 -----------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.-..++++.+-.++.+++-=..-|.+.||. ..|++..|++.+|+++|-+....
T Consensus 359 IpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~-AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 359 IPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNL-AQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHH-HHHHHHhcChHHHHHHHhhhcCh
Confidence 112344555555555554433445555554 56777778888888887665543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0059 Score=36.35 Aligned_cols=53 Identities=23% Similarity=0.297 Sum_probs=43.5
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..|++++|.++|+++.+.. +-+...+-.+..+|.+.|++++|..+++++....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5688899999999987642 2277778889999999999999999999988764
|
... |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.13 Score=46.28 Aligned_cols=205 Identities=10% Similarity=0.100 Sum_probs=119.2
Q ss_pred hhhHhhhcCCCCCChhhcchhhcC-----cchhhhHHHHH--HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKEN-----PRSLQAQRFVD--KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~l~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
....|+..+-+.+++++|.++... +....+--+.. ....++..++..+ .+... .+...-|+.+-..|..
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIVEHICDK 108 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHHHHHHHH
Confidence 334778888888888888877653 11111111111 2255666666555 22221 2222223333333333
Q ss_pred cCCHHH---HHHHHHHH-HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---C--
Q 045820 85 LNEQDT---AVKFFSNH-LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV---T-- 155 (225)
Q Consensus 85 ~~~~~~---a~~~~~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~---~-- 155 (225)
.+++-. |..-+... -+.|+.++|..+|+++.+.. +-|+.+.|-+-..|+.. ++++|+.++.+....-+ +
T Consensus 109 i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~ 186 (906)
T PRK14720 109 ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYV 186 (906)
T ss_pred HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcch
Confidence 333221 22111111 35588888888888887754 34777888888888888 88888888776654311 1
Q ss_pred -------------cc-HHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 045820 156 -------------QN-VVTLIQLLQRL--EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219 (225)
Q Consensus 156 -------------p~-~~t~~~l~~~~--~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 219 (225)
|+ ...|-.+.+.. ..|..--+.++-.+-..|-...++++++++++.+.+.- +-|.....-|+.
T Consensus 187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~ 265 (906)
T PRK14720 187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIR 265 (906)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHH
Confidence 11 11111222222 12445567788888899999999999999999998743 236667777777
Q ss_pred Hhhc
Q 045820 220 KLDQ 223 (225)
Q Consensus 220 ~~~~ 223 (225)
+|.+
T Consensus 266 ~y~~ 269 (906)
T PRK14720 266 FYKE 269 (906)
T ss_pred HHHH
Confidence 7653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.047 Score=33.59 Aligned_cols=88 Identities=19% Similarity=0.219 Sum_probs=61.8
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|...+++..+.. +.+...+..+...+...+++ ++|.+.|....+.. +.+..++
T Consensus 10 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------------~~a~~~~~~~~~~~-~~~~~~~ 71 (100)
T cd00189 10 YYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKY----------------EEALEDYEKALELD-PDNAKAY 71 (100)
T ss_pred HHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhCC-CcchhHH
Confidence 347899999999999887663 22445666677777555544 55555555544432 2344678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..+...+...|++++|...+.+..+.
T Consensus 72 ~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 72 YNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 88889999999999999999887653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.011 Score=51.10 Aligned_cols=148 Identities=18% Similarity=0.203 Sum_probs=96.9
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------HhcCCHHHHHHHHHHHhh
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH----------LMVGRVEEAYEMLMNVKN 116 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----------~~~g~~~~a~~~~~~m~~ 116 (225)
++.++++.+|+.+++.+...... .--|..+-+.|+..|+++.|.++|.+- .++|.|+.|.++-.+..
T Consensus 742 ai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~- 818 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECH- 818 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhc-
Confidence 34789999999999999877443 334788889999999999999998655 88899999998876654
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH--------HHHHHHHHhhcCCCCC--HHHHHHHHHHH
Q 045820 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--------TLIQLLQRLEMGHIPR--TITFNNVIQAL 186 (225)
Q Consensus 117 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--------t~~~l~~~~~~~~~p~--~~~~~~li~~~ 186 (225)
|....+..|-+-..-.-++|++.+|++++-.... |+.. -+.-++++.++ ..|+ ..|--.+-.-|
T Consensus 819 -~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~aiqmydk~~~~ddmirlv~k-~h~d~l~dt~~~f~~e~ 892 (1636)
T KOG3616|consen 819 -GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDKAIQMYDKHGLDDDMIRLVEK-HHGDHLHDTHKHFAKEL 892 (1636)
T ss_pred -CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chHHHHHHHhhCcchHHHHHHHH-hChhhhhHHHHHHHHHH
Confidence 3444566677766777788888888877643211 1111 01112222221 1122 22444455666
Q ss_pred HccCcHHHHHHHHHHHH
Q 045820 187 CGVGKIHKALLLLFLMY 203 (225)
Q Consensus 187 ~~~g~~~~a~~~~~~m~ 203 (225)
-..|+...|..-|-+.-
T Consensus 893 e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 893 EAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HhccChhHHHHHHHhhh
Confidence 67777777777665543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0047 Score=38.69 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=51.9
Q ss_pred hCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHH
Q 045820 50 ASPLKERIDIFNSIKKDGT-NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYT 127 (225)
Q Consensus 50 ~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~ 127 (225)
.|+++.|+.+|+.+.+..- .++...+-.+-.++.+.|++ ++|..++++.. ..| +....-
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y----------------~~A~~~~~~~~---~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY----------------EEAIELLQKLK---LDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH----------------HHHHHHHHCHT---HHHCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH----------------HHHHHHHHHhC---CCCCCHHHHH
Confidence 5889999999999987743 23455565577888555555 55555554411 122 223333
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 045820 128 AIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 128 ~ll~~~~~~g~~~~a~~~~~~ 148 (225)
.+-.+|.+.|++++|..++++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhc
Confidence 557889999999999999875
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.34 Score=41.86 Aligned_cols=124 Identities=10% Similarity=0.007 Sum_probs=85.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhc--------
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM-------- 170 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~-------- 170 (225)
-+.|.+-+|..++++-.-.+ +-+...|-..|..=.+.|+.+.|..+..+..+. ++-+..-|.--|.|...
T Consensus 730 Ek~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHH
Confidence 45678888889888876553 347778999999999999999999888777653 34455556555533322
Q ss_pred ----CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 171 ----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 171 ----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
.+.-|..+.-++-..|-.-.++++|.+.|....+.+ +-+..+|..+.+-+.+.|
T Consensus 808 DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 808 DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhC
Confidence 234455666666677777778888888888877643 223466666666666554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.16 Score=42.74 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=90.0
Q ss_pred hhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045820 40 QAQRFVDKI-KASPLKERIDIFNSIKKDGTNW-SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND 117 (225)
Q Consensus 40 ~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~ 117 (225)
.+...++.+ |...++.|..+|...++.+..+ .+.+++++|.-+|. +|..-|.++|+.=...
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-----------------kD~~~AfrIFeLGLkk 430 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-----------------KDKETAFRIFELGLKK 430 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-----------------CChhHHHHHHHHHHHh
Confidence 344555655 6677888888999988888777 77888888888865 4455666666653321
Q ss_pred CCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 045820 118 GLKPDVYT-YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196 (225)
Q Consensus 118 g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 196 (225)
-+|... -+..++-+...++-+.+..+|++....++.|+ -....|..+|+--...|+...+.
T Consensus 431 --f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~----------------ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 431 --FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD----------------KSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred --cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh----------------hhHHHHHHHHHHHHhcccHHHHH
Confidence 123323 35567777777888888888888877655422 23568888888888888888888
Q ss_pred HHHHHHHh
Q 045820 197 LLLFLMYE 204 (225)
Q Consensus 197 ~~~~~m~~ 204 (225)
++-+++..
T Consensus 493 ~lekR~~~ 500 (656)
T KOG1914|consen 493 KLEKRRFT 500 (656)
T ss_pred HHHHHHHH
Confidence 88777654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.25 Score=41.94 Aligned_cols=98 Identities=19% Similarity=0.258 Sum_probs=58.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHH---------H
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVVTLIQLLQ---------R 167 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~l~~---------~ 167 (225)
.+.+..++|+..++ |..+ |..+-..=-..+-+.|++++|+.+|..+.+.+.. -+..--..++. +
T Consensus 90 Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 45667777777666 3333 2224444455677888899999999888766543 22222222221 1
Q ss_pred hhcCCCCCHHHHHHHHHH---HHccCcHHHHHHHHHHH
Q 045820 168 LEMGHIPRTITFNNVIQA---LCGVGKIHKALLLLFLM 202 (225)
Q Consensus 168 ~~~~~~p~~~~~~~li~~---~~~~g~~~~a~~~~~~m 202 (225)
......| ..+|..+-.. ++..|++.+|++++...
T Consensus 165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1222333 3466665543 34589999999999887
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.17 Score=41.02 Aligned_cols=89 Identities=12% Similarity=0.066 Sum_probs=66.6
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHH
Q 045820 46 DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVY 124 (225)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ 124 (225)
.++..|++++|+..|++..+.. +-+...|..+-.+|.+.|+ +++|...+++..+. .| +..
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~----------------~~eAl~~~~~Al~l--~P~~~~ 71 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGN----------------FTEAVADANKAIEL--DPSLAK 71 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHh--CcCCHH
Confidence 3568899999999999998763 2356667777777755555 45555555555543 34 566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.|..+-.+|.+.|++++|...|++..+..
T Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 72 AYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 78888899999999999999999988754
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.15 Score=43.38 Aligned_cols=119 Identities=14% Similarity=0.058 Sum_probs=79.1
Q ss_pred CCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHH-------------------Hh-------cCCHHHHHHHHHHHh
Q 045820 67 GTNWSVSDFNDLLMALVMLN-----EQDTAVKFFSNH-------------------LM-------VGRVEEAYEMLMNVK 115 (225)
Q Consensus 67 g~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~-------------------~~-------~g~~~~a~~~~~~m~ 115 (225)
+.+.|...|...+.+..... +.+.|..+|++. .. ..++..+.+...+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34556677777777754432 255666666655 00 112233333333322
Q ss_pred hC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHH
Q 045820 116 ND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194 (225)
Q Consensus 116 ~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 194 (225)
.. ....+...|.++--.+...|++++|...+++..... |+...|..+-..+...|+.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------------------ps~~a~~~lG~~~~~~G~~~e 471 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------------------MSWLNYVLLGKVYELKGDNRL 471 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------------CCHHHHHHHHHHHHHcCCHHH
Confidence 21 123345677777666667799999999999988765 777889999999999999999
Q ss_pred HHHHHHHHHhc
Q 045820 195 ALLLLFLMYEH 205 (225)
Q Consensus 195 a~~~~~~m~~~ 205 (225)
|.+.+++..+-
T Consensus 472 A~~~~~~A~~L 482 (517)
T PRK10153 472 AADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHhc
Confidence 99999988753
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.12 Score=37.12 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=37.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC-C-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKP-D-VYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..|++++|...|++..+.+..+ + ...+..+-..|.+.|++++|...+.+..+.
T Consensus 47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455555555555554432222 2 457888899999999999999999998875
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.025 Score=33.67 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=54.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC-cHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG-KIHKALLLLF 200 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~ 200 (225)
+..+|..+-..+.+.|++++|+..|++..+..- -+...|..+-.+|.+.| ++++|++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-------------------~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-------------------NNAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-------------------THHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------CCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 456788888899999999999999999988642 46678888889999999 7999999998
Q ss_pred HHHh
Q 045820 201 LMYE 204 (225)
Q Consensus 201 ~m~~ 204 (225)
...+
T Consensus 63 ~al~ 66 (69)
T PF13414_consen 63 KALK 66 (69)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.14 Score=36.03 Aligned_cols=92 Identities=9% Similarity=0.008 Sum_probs=72.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
...|++++|.++|.....- .| +..-|-.+-..+-..|++++|...|........ -|..
T Consensus 46 y~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-------------------ddp~ 104 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-------------------DAPQ 104 (157)
T ss_pred HHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------------------CCch
Confidence 5678888888888887753 45 445566777788888999999999999888764 5778
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhc-CCCCCH
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEH-GKIPSR 211 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~ 211 (225)
.+-.+-.++...|+.+.|.+-|+..+.. +-.|..
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~ 139 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICGEVSEH 139 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhH
Confidence 8888899999999999999999988763 444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.17 Score=39.82 Aligned_cols=132 Identities=17% Similarity=0.255 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHhHH
Q 045820 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVM--LNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG---LKPDVYTYT 127 (225)
Q Consensus 53 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~ 127 (225)
+++.+.+++.|++.|++-+..+|-+....... ..+++ ....+|..+|+.|++.. ..++-..+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~------------~~~~ra~~iy~~mKk~H~fLTs~~D~~~a 145 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYD------------EIIQRAKEIYKEMKKKHPFLTSPEDYPFA 145 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHH------------HHHHHHHHHHHHHHHhCccccCccchhHH
Confidence 55566788999999999888777664444433 22222 34577888999998754 235667777
Q ss_pred HHHHHHHhcCC----HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc-Cc--HHHHHHHHH
Q 045820 128 AIMDGFCKVGR----SNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV-GK--IHKALLLLF 200 (225)
Q Consensus 128 ~ll~~~~~~g~----~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~-g~--~~~a~~~~~ 200 (225)
++|.. ..++ .+.++.+|+.+.+.|+..+ |..-+-+-|.++... .+ +.++.++++
T Consensus 146 ~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kg-----------------n~LQ~LS~iLaL~~~~~~~~v~r~~~l~~ 206 (297)
T PF13170_consen 146 ALLAM--TSEDVEELAERMEQCYQKLADAGFKKG-----------------NDLQFLSHILALSEGDDQEKVARVIELYN 206 (297)
T ss_pred HHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCC-----------------cHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 77655 3333 4667888999998887632 222222223333221 11 346677777
Q ss_pred HHHhcCCCCCHHHHH
Q 045820 201 LMYEHGKIPSRTSHD 215 (225)
Q Consensus 201 ~m~~~g~~p~~~~~~ 215 (225)
.+.+.|+++....|.
T Consensus 207 ~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 207 ALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHcCCcccccccc
Confidence 777777776555544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.14 Score=36.60 Aligned_cols=84 Identities=19% Similarity=0.116 Sum_probs=54.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKP--DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
..|++++|...|++.......| ...+|..+-..|...|++++|...+++..+.. | ....
T Consensus 47 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~-----------------~~~~ 107 (168)
T CHL00033 47 SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--P-----------------FLPQ 107 (168)
T ss_pred HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-----------------CcHH
Confidence 3455566666666655432222 23578888999999999999999999988652 2 1223
Q ss_pred HHHHHHHHHH-------ccCcHHHHHHHHHHH
Q 045820 178 TFNNVIQALC-------GVGKIHKALLLLFLM 202 (225)
Q Consensus 178 ~~~~li~~~~-------~~g~~~~a~~~~~~m 202 (225)
++..+...+. ..|+++.|...+++-
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 3444444444 788888776666554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.19 Score=44.55 Aligned_cols=119 Identities=18% Similarity=0.241 Sum_probs=93.5
Q ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045820 38 SLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND 117 (225)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~ 117 (225)
+.-..++...+.++++..|+...+.+.+. .|| ..|..++.++.. .+.|..++|..+++....-
T Consensus 10 err~rpi~d~ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl--------------~r~gk~~ea~~~Le~~~~~ 72 (932)
T KOG2053|consen 10 ERRLRPIYDLLDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSL--------------FRLGKGDEALKLLEALYGL 72 (932)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHH--------------HHhcCchhHHHHHhhhccC
Confidence 34467888899999999999999887655 233 346667777755 5678888888888887765
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHH
Q 045820 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194 (225)
Q Consensus 118 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 194 (225)
+.. |..|...+-..|.+.++.++|..+|++..... |+......+..+|++.+++.+
T Consensus 73 ~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------------------P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 73 KGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--------------------PSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred CCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--------------------CcHHHHHHHHHHHHHHHHHHH
Confidence 443 89999999999999999999999999987643 777777777888888777654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.022 Score=33.50 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=48.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 130 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
-..+.+.|++++|...|++..+..- -+...+..+-.++...|++++|..+|++..+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P-------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDP-------------------DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCST-------------------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4578899999999999999998752 36778888899999999999999999999764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.25 Score=37.54 Aligned_cols=89 Identities=21% Similarity=0.191 Sum_probs=75.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
.+.|++..|...|.+...- -++|-.+||.+--+|-+.|+++.|..-|.+..+.-. -+...
T Consensus 111 ~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-------------------~~p~~ 170 (257)
T COG5010 111 IRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-------------------NEPSI 170 (257)
T ss_pred HHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-------------------CCchh
Confidence 6778888888888887753 367899999999999999999999999999887543 45677
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCC
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGK 207 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 207 (225)
+|.|--.|.-.|+.+.|..++......+.
T Consensus 171 ~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 171 ANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 88899999999999999999999887653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.22 Score=36.76 Aligned_cols=124 Identities=6% Similarity=-0.011 Sum_probs=83.0
Q ss_pred HHHHhcCCHHHHHHHHHHH-------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 80 MALVMLNEQDTAVKFFSNH-------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~-------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..|...|+++.+..-.+.+ ...++.+++...+....+.. +.|...|..+-..|...|++++|...|++..+.
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l 102 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADPLHQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL 102 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCccccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455555555544433332 12455566666666655432 457888999999999999999999999998876
Q ss_pred CCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHccCc--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQA-LCGVGK--IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 153 g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~-~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
.- -+...+..+-.+ +...|+ .++|.+++++..+..-. +...+..+-..+.+.
T Consensus 103 ~P-------------------~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~ 157 (198)
T PRK10370 103 RG-------------------ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQ 157 (198)
T ss_pred CC-------------------CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHc
Confidence 53 366777777776 466676 59999999999975422 445555554444443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.47 Score=41.05 Aligned_cols=111 Identities=13% Similarity=0.049 Sum_probs=66.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH------------
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------------ 166 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~------------ 166 (225)
-..|..++-..+|.+.... ++-....|-...+-+...|+...|..++.+..+..-- +...+-+.++
T Consensus 561 k~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred HhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHH
Confidence 4457777777777776654 2234445666666677777777777777776654311 2222222220
Q ss_pred ---HhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHH
Q 045820 167 ---RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213 (225)
Q Consensus 167 ---~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 213 (225)
.......|+...|.--+.----.+++++|.+++++..+. -|+..-
T Consensus 639 ~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~K 686 (913)
T KOG0495|consen 639 DLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHK 686 (913)
T ss_pred HHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHH
Confidence 112234577788877777777778888888888877653 455443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.17 Score=39.62 Aligned_cols=132 Identities=14% Similarity=0.080 Sum_probs=85.7
Q ss_pred hHhhhcCCCCCChhhcchhhcCcch---hhhHHHHHH-----HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 14 VLLVDSPSRSPSAAESLDLKENPRS---LQAQRFVDK-----IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~l~~~-----~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
..++...-|.+.+++|..+|.+... .++...+.+ .-.++.+.|..+|+...+. +.-+...|...++.+.+.
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHh
Confidence 3455666667778888888877543 234444432 2367777899999998776 566778899999999777
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 045820 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP---DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162 (225)
Q Consensus 86 ~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 162 (225)
++.+.|..+|+. .... +.+ ....|...+.-=.+.|+++.+..+..++.+. -|+...+.
T Consensus 84 ~d~~~aR~lfer----------------~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~ 144 (280)
T PF05843_consen 84 NDINNARALFER----------------AISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLE 144 (280)
T ss_dssp T-HHHHHHHHHH----------------HCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHH
T ss_pred CcHHHHHHHHHH----------------HHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHH
Confidence 766666555554 4432 222 2247888888889999999999999988875 33444444
Q ss_pred HHH
Q 045820 163 QLL 165 (225)
Q Consensus 163 ~l~ 165 (225)
.+.
T Consensus 145 ~f~ 147 (280)
T PF05843_consen 145 LFS 147 (280)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.15 Score=40.61 Aligned_cols=51 Identities=8% Similarity=0.011 Sum_probs=28.3
Q ss_pred hhhcCCCCCChhhcchhhcCcchhh------------hHHHHHHHHhCCHHHHHHHHHHHHhc
Q 045820 16 LVDSPSRSPSAAESLDLKENPRSLQ------------AQRFVDKIKASPLKERIDIFNSIKKD 66 (225)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~l~~~~~~~~~~~a~~~~~~m~~~ 66 (225)
+...-...|+..-|..++..=+... -..+..++++|+++....++-.|++.
T Consensus 6 IA~~A~~~GR~~LA~~LL~~Ep~~~~qVplLL~m~e~e~AL~kAi~SgD~DLi~~vLl~L~~~ 68 (319)
T PF04840_consen 6 IARKAYEEGRPKLATKLLELEPRASKQVPLLLKMGEDELALNKAIESGDTDLIYLVLLHLKRK 68 (319)
T ss_pred HHHHHHHcChHHHHHHHHHcCCChHHHHHHHhcCCchHHHHHHHHHcCCccHHHHHHHHHHHh
Confidence 3344445666666666554411111 12355567888888777776666543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.027 Score=34.49 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=52.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERG--VTQNVVTLIQLLQRLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~l~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
.+|+.+-..|.+.|++++|+..|++..+.. ..++. |+ ..+++.+-.+|...|++++|.++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDH---------------PDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHH---------------HHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 468999999999999999999999887541 11111 33 5788999999999999999999999
Q ss_pred HHHh
Q 045820 201 LMYE 204 (225)
Q Consensus 201 ~m~~ 204 (225)
+..+
T Consensus 71 ~al~ 74 (78)
T PF13424_consen 71 KALD 74 (78)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8654
|
... |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.56 Score=40.48 Aligned_cols=154 Identities=11% Similarity=0.131 Sum_probs=103.2
Q ss_pred CCCCchhhHhhhcCCCCCChhhcchhhcCcchhhhHHH---HH----H----HHhCCHHHHHHHHHHHHhc---------
Q 045820 7 NSPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRF---VD----K----IKASPLKERIDIFNSIKKD--------- 66 (225)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l---~~----~----~~~~~~~~a~~~~~~m~~~--------- 66 (225)
.+|...+..+.+-|-+.|+.+.|..+|.+.....|..+ -. + ++..+++.|+.+.++-...
T Consensus 384 Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~y 463 (835)
T KOG2047|consen 384 GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYY 463 (835)
T ss_pred CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhh
Confidence 34445555777889999999999999998766654432 22 1 2667788888876654211
Q ss_pred -C-C------CCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCC
Q 045820 67 -G-T------NWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLK 120 (225)
Q Consensus 67 -g-~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~ 120 (225)
| . .-+...|+..++.--..|-++....+|+.+ -.+.-+++++++|++-..-=--
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 1 1 124566777777777778899999999888 3456667777777654432223
Q ss_pred CCHH-hHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCccHHHH
Q 045820 121 PDVY-TYTAIMDGFCKV---GRSNEAMELLNEAIERGVTQNVVTL 161 (225)
Q Consensus 121 p~~~-~~~~ll~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~ 161 (225)
|++. .||.-+.-+.+. .+++.|..+|++..+ |++|...-+
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKt 587 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKT 587 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHH
Confidence 5553 588877776553 268899999999988 777655433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.54 Score=39.99 Aligned_cols=119 Identities=14% Similarity=0.089 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCccHHHHHHHHH--------
Q 045820 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN--------EAIERGVTQNVVTLIQLLQ-------- 166 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~--------~m~~~g~~p~~~t~~~l~~-------- 166 (225)
...++.+++...-+....-....-=+++......|+++.|.+++. ...+.+..|..+.+...+.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence 455555555555443222223444556666778889999999888 7777788887776665551
Q ss_pred ----------HhhcCCCCCHHHHHHHH----HHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 167 ----------RLEMGHIPRTITFNNVI----QALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 167 ----------~~~~~~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
..... .+....-+.++ .---++|+-++|..+++++.+.. .+|..+...++.+|++
T Consensus 436 a~~vl~~Ai~~~~~~-~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQ-QTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYAR 504 (652)
T ss_pred HHHHHHHHHHHHHHh-cccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHh
Confidence 11111 11112223333 33346799999999999999743 5789999999999986
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.38 Score=39.75 Aligned_cols=136 Identities=14% Similarity=0.239 Sum_probs=93.5
Q ss_pred HHHHH-HhCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 045820 44 FVDKI-KASPLKERIDIFNSIKKDG-TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP 121 (225)
Q Consensus 44 l~~~~-~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p 121 (225)
.++++ +...++.|..+|...++.| +.+++.+++++|..++. |+...|..+|+.=... -|
T Consensus 403 ~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-----------------~d~~ta~~ifelGl~~--f~ 463 (660)
T COG5107 403 HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-----------------GDRATAYNIFELGLLK--FP 463 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-----------------CCcchHHHHHHHHHHh--CC
Confidence 44444 5667888888888888888 67788888888887754 4555566666553322 34
Q ss_pred CHHhH-HHHHHHHHhcCCHHHHHHHHHHHH----HcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 045820 122 DVYTY-TAIMDGFCKVGRSNEAMELLNEAI----ERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196 (225)
Q Consensus 122 ~~~~~-~~ll~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 196 (225)
|...| +-.+.-+.+.++-+.|..+|+.-. +... -..|..+|+--...|+...+.
T Consensus 464 d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~---------------------k~iy~kmi~YEs~~G~lN~v~ 522 (660)
T COG5107 464 DSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQL---------------------KRIYDKMIEYESMVGSLNNVY 522 (660)
T ss_pred CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhh---------------------hHHHHHHHHHHHhhcchHHHH
Confidence 54443 556677788888888888888443 2222 368899999889999998888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 197 ~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
.+-+.|.+ +.|...+-..+...|
T Consensus 523 sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 523 SLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred hHHHHHHH--HcCcHhHHHHHHHHH
Confidence 88888865 356655555555444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.17 Score=33.37 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=64.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045820 42 QRFVDKIKASPLKERIDIFNSIKKDGT--NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119 (225)
Q Consensus 42 ~~l~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~ 119 (225)
.......+.|++++|...|+.+.+..- ......+..+..++.+.|+ ++.|...|+.......
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK----------------YADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc----------------HHHHHHHHHHHHHHCC
Confidence 334445688999999999999976521 1123455557777755554 4555555555544221
Q ss_pred --CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 120 --KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 120 --~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
......+..+..++.+.|+.++|...+++..+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 1124567777888999999999999999998874
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.056 Score=32.50 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=53.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
..|.+.+++++|..+++.+.+..- .+...|...-.++.+.|++++|.+.|+...+. .|+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-------------------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-------------------DDPELWLQRARCLFQLGRYEEALEDLERALEL--SPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-------------------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCC
Confidence 578899999999999999998743 46677888889999999999999999999975 355
Q ss_pred HHHHHH
Q 045820 211 RTSHDM 216 (225)
Q Consensus 211 ~~~~~~ 216 (225)
......
T Consensus 62 ~~~~~~ 67 (73)
T PF13371_consen 62 DPDARA 67 (73)
T ss_pred cHHHHH
Confidence 554443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.18 Score=44.14 Aligned_cols=75 Identities=24% Similarity=0.244 Sum_probs=47.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
.....|.+|+.+++.+.+... -.--|.-+..-|+..|+++.|+++|.+. ..
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------------------------~~ 793 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------------------------DL 793 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------------------------ch
Confidence 445666777777776665422 2223666677777777777777777542 13
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHH
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
++--|..|.++|+|+.|.++-.+.
T Consensus 794 ~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 794 FKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred hHHHHHHHhccccHHHHHHHHHHh
Confidence 455567777777777777766554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.47 Score=38.10 Aligned_cols=185 Identities=15% Similarity=0.079 Sum_probs=108.2
Q ss_pred cCCCCCChhhcchhhcCcchhh---hHHHH---HHH----HhCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCC
Q 045820 19 SPSRSPSAAESLDLKENPRSLQ---AQRFV---DKI----KASPLKERIDIFNSIKKDGTNWS-VSDFNDLLMALVMLNE 87 (225)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~---~~~l~---~~~----~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~ 87 (225)
.+...|++++|.+.+.+..... ...+. ... ..+....+...++. .....|+ ......+-..+...|+
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC
Confidence 4566778888877766522111 11111 111 23444555555443 1122232 2333445567778888
Q ss_pred HHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCC-CCCH--HhHHHHHHHHHhcCCHHHHHHHH
Q 045820 88 QDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGL-KPDV--YTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 88 ~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
++.|...+++. ...|++++|...+++..+... .|+. ..|-.+...+...|++++|..++
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888776 667999999999988776422 2333 34567888899999999999999
Q ss_pred HHHHHcCC-CccHHHH-HH-H-H-H---------------Hhhc--CCCC-CHHHH--HHHHHHHHccCcHHHHHHHHHH
Q 045820 147 NEAIERGV-TQNVVTL-IQ-L-L-Q---------------RLEM--GHIP-RTITF--NNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 147 ~~m~~~g~-~p~~~t~-~~-l-~-~---------------~~~~--~~~p-~~~~~--~~li~~~~~~g~~~~a~~~~~~ 201 (225)
++...... .+..... +. . + . .... ...| ....+ .....++...|+.++|..+++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 210 DTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99864332 2222222 22 1 1 0 0110 0001 11122 2566777889999999999999
Q ss_pred HHhc
Q 045820 202 MYEH 205 (225)
Q Consensus 202 m~~~ 205 (225)
+...
T Consensus 290 l~~~ 293 (355)
T cd05804 290 LKGR 293 (355)
T ss_pred HHHH
Confidence 8763
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.11 Score=45.80 Aligned_cols=85 Identities=20% Similarity=0.239 Sum_probs=65.3
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH---------------------------Hhc
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------------------------LMV 101 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---------------------------~~~ 101 (225)
.-|+.+.|.+-.+.++ +..+|..|-.+|.+..++|-|.-.+-.| ...
T Consensus 740 tiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred EeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 5588888877776666 5678999999999999999998888777 556
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 102 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
|.+++|+.+|.+.++ |..+=+-|...|++++|+++-+.
T Consensus 814 gMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~ 851 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAET 851 (1416)
T ss_pred hhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhh
Confidence 777888888877764 44555667777888888877654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.7 Score=39.78 Aligned_cols=78 Identities=12% Similarity=0.156 Sum_probs=50.8
Q ss_pred cCCCCCChhhcchhhcCcchhhhHHHH-----H--HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCCHHH
Q 045820 19 SPSRSPSAAESLDLKENPRSLQAQRFV-----D--KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV-MLNEQDT 90 (225)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~l~-----~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~~~~~~ 90 (225)
-...+|..++|++.+......-.+.+- . ..+.+++++|..++..+... .||...|.-.+..+. +..+.-+
T Consensus 194 i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 194 ILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred HHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHH
Confidence 355677788888877765544433221 1 34899999999999999887 677776666555444 4444333
Q ss_pred HH-HHHHHH
Q 045820 91 AV-KFFSNH 98 (225)
Q Consensus 91 a~-~~~~~~ 98 (225)
+. .+|...
T Consensus 272 ~lk~ly~~l 280 (700)
T KOG1156|consen 272 ALKALYAIL 280 (700)
T ss_pred HHHHHHHHH
Confidence 33 666655
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.045 Score=32.16 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=43.8
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
...|++++|.+.|++..+.. +-+...+..+-..+.+.|++++|...|++..+.
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788899999999988764 226778899999999999999999999998764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.59 Score=39.88 Aligned_cols=101 Identities=13% Similarity=0.214 Sum_probs=79.3
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWS-VSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYE 109 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~ 109 (225)
..|++++|+..++.-.++ .|+ +..|..--..+-+.|++++|.+.++.. .++|++++|.+
T Consensus 206 ~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred HhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 789999999999988877 444 666888888899999999999988766 88999999999
Q ss_pred HHHHHhhCCCCC--CHH----hH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 110 MLMNVKNDGLKP--DVY----TY--TAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 110 ~~~~m~~~g~~p--~~~----~~--~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
++....+.+..| |.. .| .-.-.+|.+.|++..|+.-|....+
T Consensus 284 ~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 284 TASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999988766544 222 12 4467889999999888777655543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.89 Score=39.16 Aligned_cols=168 Identities=14% Similarity=0.105 Sum_probs=115.9
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
..|+.++|....+.=.+..++ +.+.|+.+=-.+-...++++|.+.|... ++.++++.....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 778889999888776655433 6667776666666667889998888665 666777777766
Q ss_pred HHHHhhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHHHHH-------HHhhcCC---------
Q 045820 111 LMNVKNDGLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVTLIQLL-------QRLEMGH--------- 172 (225)
Q Consensus 111 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~l~-------~~~~~~~--------- 172 (225)
-.+..+ ..|+ ...|-.+.-++--.|+...|..++++..+.. ..|+...|--.. .+.+.|.
T Consensus 132 r~~LLq--l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 132 RNQLLQ--LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 666654 2454 4468888889999999999999999998765 356666665443 1222221
Q ss_pred --C---CCHH-HHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 173 --I---PRTI-TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 173 --~---p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
+ .|-. .-.+-..-+.+.+++++|..++..+... .||..-|...+..+
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA 262 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence 1 1222 2233345567889999999999999875 48887777665443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.83 Score=38.72 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhh-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHH
Q 045820 104 VEEAYEMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNV 182 (225)
Q Consensus 104 ~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~l 182 (225)
+.+..++|-++.. .+.++|...+..|--.|--.|++++|.++|+..... +| -|..+||-|
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~P-----------------nd~~lWNRL 470 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KP-----------------NDYLLWNRL 470 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CC-----------------chHHHHHHh
Confidence 4455566666643 343456666677766777788888888888877753 22 456678888
Q ss_pred HHHHHccCcHHHHHHHHHHHHh
Q 045820 183 IQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 183 i~~~~~~g~~~~a~~~~~~m~~ 204 (225)
=..++...+.++|+.-|++..+
T Consensus 471 GAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHh
Confidence 8888888888888888877765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1 Score=41.08 Aligned_cols=199 Identities=11% Similarity=0.074 Sum_probs=129.5
Q ss_pred CchhhHhhhcCCCCCChhhcchhhcCcc-hhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 045820 10 TPFSVLLVDSPSRSPSAAESLDLKENPR-SLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87 (225)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 87 (225)
+..+..+.++-.+.|.+.+|++.+-+.+ ...|...+... +.|.+++....+..-++..-.|.. =+.||-+|++.++
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNR 1181 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhch
Confidence 4566788888899999999998887654 44566677755 889999988887766666555554 4679999999999
Q ss_pred HHHHHHHHHH------------HHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045820 88 QDTAVKFFSN------------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 88 ~~~a~~~~~~------------~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 155 (225)
+.+..+++.. ....+.++.|.-+|. ++..|.-+-..+...|+++.|.+.-++..+...
T Consensus 1182 l~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~kt- 1251 (1666)
T KOG0985|consen 1182 LTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKT- 1251 (1666)
T ss_pred HHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhH-
Confidence 8887776521 144455555555443 445677888888888888888776554332211
Q ss_pred ccHHHHHHH-------HHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhh
Q 045820 156 QNVVTLIQL-------LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK-IPSRTSHDMLIKKLD 222 (225)
Q Consensus 156 p~~~t~~~l-------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~ 222 (225)
+-.+.|.++ .+++...+.....-..-++.-|-..|-+++-+.+++.-. |+ +.....|+-|--.|+
T Consensus 1252 WK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHH
Confidence 111111111 144444455566667888899999999998877776432 22 223345555544444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.058 Score=32.97 Aligned_cols=68 Identities=21% Similarity=0.422 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 73 SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 73 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
.+|+.+-..|...|++++|...|++ |+++.+.... -.|+ ..+++.+-..|.+.|++++|+..+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~---------al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEK---------ALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH---------HHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH---------HHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678888888888888888877764 3444333322 1244 56799999999999999999999988654
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.05 Score=45.29 Aligned_cols=122 Identities=13% Similarity=0.150 Sum_probs=78.5
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDT 90 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~ 90 (225)
.....++.-+.+.|.++.|+++...++. .+--+++.|+++.|.++-++. .+...|..|-+...++|+++.
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~----rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~l 365 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDH----RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIEL 365 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHH----HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHH----HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHH
Confidence 3344556666666666666666665432 222345777777777764433 367789999999999999999
Q ss_pred HHHHHHHH----------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 91 AVKFFSNH----------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 91 a~~~~~~~----------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
|.+.|.+. ...|+.+...++.+.....| -+|....++.-.|+.++..+++.+
T Consensus 366 Ae~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 366 AEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99988765 55677766666666655554 266666677777877777766654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.34 Score=33.69 Aligned_cols=97 Identities=10% Similarity=0.116 Sum_probs=74.1
Q ss_pred HhhCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCc
Q 045820 114 VKNDGLKPDVYT--YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK 191 (225)
Q Consensus 114 m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~ 191 (225)
|.+.+..+++.+ .|+++.-.+..+++.....+++.+.... ++..+ -..+..+|.+++.+.++..-
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~--~~~~~-----------~~~~~ssf~~if~SlsnSsS 94 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLN--TDNII-----------GWLDNSSFHIIFKSLSNSSS 94 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhh--HHHHh-----------hhcccchHHHHHHHHccChH
Confidence 556667777654 7999999999999999999999883221 11000 11566789999999977766
Q ss_pred -HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 192 -IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 192 -~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
---+..+|+-|.+.+.+++..-|..+++++.+
T Consensus 95 aK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 95 AKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 44577889999988899999999999999865
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.34 Score=32.64 Aligned_cols=104 Identities=22% Similarity=0.215 Sum_probs=73.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPD--VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
..|+.++|..+|++-...|...+ ...+=.+-+.+...|++++|..++++....- |+.. -+..
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~--------------~~~~ 76 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDE--------------LNAA 76 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcc--------------ccHH
Confidence 45888999999999988887664 3356667788999999999999999887642 1100 1122
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
....+..++...|+.++|++.+-.... ++...|..=|..|.+
T Consensus 77 l~~f~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 77 LRVFLALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 223334577788999999998877654 455578777777764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.71 Score=35.28 Aligned_cols=60 Identities=13% Similarity=-0.001 Sum_probs=38.4
Q ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHH
Q 045820 38 SLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDF---NDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
...+..-...+..|++++|...|+.+...--.. ...- -.+..++-+.++++.|...+++.
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334566667789999999999999998763222 2222 23445665666666555555544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.5 Score=37.92 Aligned_cols=135 Identities=11% Similarity=0.174 Sum_probs=84.1
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhh-hHHHHHHH----------HhCCHHHHHHHHHHHHhcCCCCChhh-HHHHHHHH
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQ-AQRFVDKI----------KASPLKERIDIFNSIKKDGTNWSVSD-FNDLLMAL 82 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~l~~~~----------~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~ 82 (225)
.|+--|.+.+++++|..+....+..+ ++-++... ...+++.|...|...-.++..-|... --++-..+
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 45567889999999999988866554 33333322 12235556666655545544333222 23344444
Q ss_pred HhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHH-HHHHHHhcCCHHHHH
Q 045820 83 VMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTA-IMDGFCKVGRSNEAM 143 (225)
Q Consensus 83 ~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~ 143 (225)
.-.-++|++.-.++.+ +..|.+.+|+++|-++....++ |-.+|-+ +.++|.+.++.+-|.
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHH
Confidence 4445566666555444 6789999999999888754443 5556654 557789999999887
Q ss_pred HHHHHHH
Q 045820 144 ELLNEAI 150 (225)
Q Consensus 144 ~~~~~m~ 150 (225)
+++-++.
T Consensus 449 ~~~lk~~ 455 (557)
T KOG3785|consen 449 DMMLKTN 455 (557)
T ss_pred HHHHhcC
Confidence 7765543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.26 Score=40.74 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=28.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVY----TYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
...|++++|...|++..+ +.|+.. +|..+-.+|.+.|+.++|...+++..+
T Consensus 86 ~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 86 FSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666655443 245422 355555566666666666666665554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.75 Score=41.73 Aligned_cols=160 Identities=8% Similarity=0.029 Sum_probs=101.6
Q ss_pred hHHHHHHH-HhCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHhh
Q 045820 41 AQRFVDKI-KASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDTAVKF--FSNHLMVGRVEEAYEMLMNVKN 116 (225)
Q Consensus 41 ~~~l~~~~-~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~--~~~~~~~g~~~~a~~~~~~m~~ 116 (225)
+..++... ..+++++|..+.+.-.+. .-.+...-+..+ .+.+.++.+.+..+ .+......++.-...++..|.+
T Consensus 34 ~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~ 111 (906)
T PRK14720 34 LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILL 111 (906)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHh
Confidence 34566666 889999999999855544 222233333333 55566666665554 2222555667777777777776
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHccCcHHHH
Q 045820 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKA 195 (225)
Q Consensus 117 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a 195 (225)
.+ -+...+-.+..+|-+.|+.+++..+|+++.+.. .-|+.+.|.+--.++. .+.--...+.-.+..|....++.++
T Consensus 112 ~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~ 188 (906)
T PRK14720 112 YG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGI 188 (906)
T ss_pred hh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHH
Confidence 43 355688888999999999999999999999887 3344455544422221 2222334455555666666677777
Q ss_pred HHHHHHHHhc
Q 045820 196 LLLLFLMYEH 205 (225)
Q Consensus 196 ~~~~~~m~~~ 205 (225)
.++|.++...
T Consensus 189 ~e~W~k~~~~ 198 (906)
T PRK14720 189 EEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHhc
Confidence 7777777654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.46 Score=37.00 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=80.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
.+.+++.+|...|.+... +.| |.+-|..=--+|++.|.++.|.+=-+......- --..
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-------------------~ysk 150 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-------------------HYSK 150 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-------------------HHHH
Confidence 788999999999999886 455 666777788899999999999877766555321 2357
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 220 (225)
+|..|=.+|.-.|++++|++.|+...+ +-|+-.+|..=|+.
T Consensus 151 ay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 151 AYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 899999999999999999999998876 67888888766654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.37 E-value=2 Score=38.57 Aligned_cols=68 Identities=21% Similarity=0.163 Sum_probs=34.2
Q ss_pred CCCCCChhhcchhhcCcc------hhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 045820 20 PSRSPSAAESLDLKENPR------SLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89 (225)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~------~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 89 (225)
+.|.|+.++|..+++... ..+.+.+..++ +.++.++|..+|++..+. .|+..-...+..+|.+.+++.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHH
Confidence 345555555555554422 11223333333 456666666666655544 444555555556666655543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.2 Score=35.57 Aligned_cols=48 Identities=4% Similarity=-0.116 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHcc----CcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 175 RTITFNNVIQALCGV----GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 175 ~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
|...|+.+-..+... +...+|.+.+.+..+.+ ..+......|++.|++
T Consensus 216 N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 216 NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 455677666666663 33455777777766533 3356677777777765
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.54 Score=37.50 Aligned_cols=98 Identities=14% Similarity=0.101 Sum_probs=58.9
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
++..|+...|..+-.+.+ -|+..-|-..|.++++.++| ++-.+.-. . +-++.-|
T Consensus 187 li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w----------------~eL~~fa~----s--kKsPIGy 240 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDW----------------DELEKFAK----S--KKSPIGY 240 (319)
T ss_pred HHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCH----------------HHHHHHHh----C--CCCCCCh
Confidence 335555555555543332 24555555566666444444 43333211 1 2244778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 198 (225)
-.++.+|.+.|+..+|.....+ + ++..-+..|.+.|++.+|.+.
T Consensus 241 epFv~~~~~~~~~~eA~~yI~k-----~-----------------------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 241 EPFVEACLKYGNKKEASKYIPK-----I-----------------------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHh-----C-----------------------ChHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888888877766 2 224567888888888888655
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.76 Score=35.59 Aligned_cols=88 Identities=13% Similarity=0.035 Sum_probs=65.1
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDV----YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~ 175 (225)
+.|++++|...|+.+.+.. |+. ..+--+-.+|...|++++|...|..+.+.--. . ...
T Consensus 155 ~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--s--------------~~~ 216 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--S--------------PKA 216 (263)
T ss_pred hcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--C--------------cch
Confidence 4588999999999988643 432 35666778899999999999999999864211 0 012
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 176 TITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
...+-.+...+...|+.++|..+|++..+.
T Consensus 217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444566777899999999999999875
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.98 E-value=1 Score=35.10 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=75.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 69 NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 69 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
.+....|-..+.-+.+.-.+....++.+.....|+.+.+...++++.... +-+...|-.+|.+|.+.|+...|...|++
T Consensus 134 d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~ 212 (280)
T COG3629 134 DDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQ 212 (280)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 44467788888888777777777777888899999999999999998753 34889999999999999999999999999
Q ss_pred HHHc-----CCCccHHHHHHH
Q 045820 149 AIER-----GVTQNVVTLIQL 164 (225)
Q Consensus 149 m~~~-----g~~p~~~t~~~l 164 (225)
+.+. |+.|...+....
T Consensus 213 l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 213 LKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHhhhhcCCCccHHHHHHH
Confidence 8763 555544444333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.71 Score=31.10 Aligned_cols=84 Identities=25% Similarity=0.310 Sum_probs=47.5
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSV--SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD---- 122 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~---- 122 (225)
..|+.++|+.+|++-...|..... ..+-.+-+.+... |++++|..+|++.... .|+
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L----------------G~~deA~~~L~~~~~~--~p~~~~~ 74 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL----------------GRYDEALALLEEALEE--FPDDELN 74 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHH--CCCcccc
Confidence 678888899999888887765442 2233344444333 4555555555554432 122
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
......+-.++...|+.++|...+-...
T Consensus 75 ~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 75 AALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1111222336677788888877765543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.89 E-value=2.5 Score=37.26 Aligned_cols=31 Identities=6% Similarity=-0.009 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.+...|-.+-..+-+.|+.+.|.+.|.-..+
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 4677888898999999999999988887653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=1 Score=32.27 Aligned_cols=67 Identities=19% Similarity=0.121 Sum_probs=53.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
....|..+-..+.+.|++++|...|++..+....+ ++ ...|..+...+.+.|++++|...++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-----------------NDRSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-----------------chHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44567778888899999999999999988754321 11 3578888899999999999999999
Q ss_pred HHHhc
Q 045820 201 LMYEH 205 (225)
Q Consensus 201 ~m~~~ 205 (225)
+..+.
T Consensus 97 ~al~~ 101 (172)
T PRK02603 97 QALEL 101 (172)
T ss_pred HHHHh
Confidence 98874
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.72 E-value=2.4 Score=36.14 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=63.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
.+.+..+.|.+.|.+... +.| |+...+-+--..-+.+.+.+|...|...... ++........-..
T Consensus 391 ~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------ik~~~~e~~~w~p 456 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------IKSVLNEKIFWEP 456 (611)
T ss_pred HHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------hhhccccccchhH
Confidence 445666677766665543 455 5555555555555566677777777665411 0000000111334
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 219 (225)
+++.|-..|.+.+..++|+..++.-.... +-|..|+.++--
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~ 497 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGY 497 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHH
Confidence 67888899999999999999999988642 335555555433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.4 Score=33.63 Aligned_cols=170 Identities=10% Similarity=0.022 Sum_probs=102.0
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhh----hH------HHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQ----AQ------RFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~------~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
.....+...|++++|.+.|++..... +. ......+.++++.|...|++..+..-.-...-|...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 34455667899999998888743221 11 112234899999999999998776322223345555555442
Q ss_pred --c---------------CCHH---HHHHHHHHH----HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHH
Q 045820 85 --L---------------NEQD---TAVKFFSNH----LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN 140 (225)
Q Consensus 85 --~---------------~~~~---~a~~~~~~~----~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 140 (225)
. .|.. .|...|+.+ ....-..+|...+..+.+. .-..-+ .+.+-|-+.|.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e~-~ia~~Y~~~~~y~ 192 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYEL-SVAEYYTKRGAYV 192 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHcCchH
Confidence 1 1222 333334433 3344445555544444321 111112 4566688999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 141 EAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 141 ~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.|..=++.+.+.--. -.......-.++.+|...|..++|..+...+..
T Consensus 193 AA~~r~~~v~~~Yp~----------------t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 193 AVVNRVEQMLRDYPD----------------TQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHCCC----------------CchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 999888888864210 013455667888999999999999888776653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.82 Score=32.55 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=65.2
Q ss_pred HHHHHHHHh-hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 045820 107 AYEMLMNVK-NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQA 185 (225)
Q Consensus 107 a~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~ 185 (225)
+...+..+. ..+..-....|..+...+...|++++|+..|++.......|. ....+|..+-..
T Consensus 18 ~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~----------------~~~~~~~~lg~~ 81 (168)
T CHL00033 18 VADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY----------------DRSYILYNIGLI 81 (168)
T ss_pred chhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch----------------hhHHHHHHHHHH
Confidence 334444442 333333456678888888899999999999999886532210 123578888899
Q ss_pred HHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 186 LCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 186 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
|...|++++|...++...+.. +....++..+...|
T Consensus 82 ~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~ 116 (168)
T CHL00033 82 HTSNGEHTKALEYYFQALERN-PFLPQALNNMAVIC 116 (168)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 999999999999999988642 22234444444444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.33 Score=28.67 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=39.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG-RSNEAMELLNEAIER 152 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~ 152 (225)
...|++++|...|++..+.. +-+...|..+-.+|.+.| ++++|...+++..+.
T Consensus 14 ~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 14 FQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34556666666666666532 236678999999999999 799999999987753
|
... |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=3.9 Score=37.49 Aligned_cols=142 Identities=12% Similarity=0.028 Sum_probs=86.2
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------Hh
Q 045820 49 KASPLKERIDIFNSIKKDGTNWS----VSDFNDLLMALVMLNEQDTAVKFFSNH------------------------LM 100 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------~~ 100 (225)
..|++++|...+++..+.--..+ ....+.+-..+...|+++.|...+.+. ..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 78899999999887655311111 123444555566788888887776554 34
Q ss_pred cCCHHHHHHHHHHHhh----CCCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCC
Q 045820 101 VGRVEEAYEMLMNVKN----DGLK--P-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~----~g~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~ 173 (225)
.|++++|...+++..+ .|.. + ....+..+-..+...|++++|...+.+.....-. .+..
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~--------------~~~~ 609 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN--------------YQPQ 609 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc--------------cCch
Confidence 5778888777766543 2211 1 2233444455566678888888887776543111 0000
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.....+..+...+...|+.++|.+.+.+...
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1123444556677788999999988888754
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.28 Score=29.33 Aligned_cols=54 Identities=28% Similarity=0.259 Sum_probs=43.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.+.+++++|.++++.+...+ +.+...|...-..+.+.|++++|...|++..+.+
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45677888888888887753 2366778888899999999999999999998754
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.31 E-value=3 Score=35.53 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHh------------hc
Q 045820 105 EEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ-NVVTLIQLLQRL------------EM 170 (225)
Q Consensus 105 ~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l~~~~------------~~ 170 (225)
+.....+++.... .+.|+ .+|-..|+.-.|..-++.|..+|.+..+.+..+ ++.+++++|+-. +.
T Consensus 348 ~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 3344444444432 23333 467778888888888999999999999998888 777888888332 22
Q ss_pred CC--CCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH--HHHHHHHH
Q 045820 171 GH--IPR-TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR--TSHDMLIK 219 (225)
Q Consensus 171 ~~--~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~ 219 (225)
|+ -+| ..--...++-+...|+-..|..+|+.....++.||. .+|..+|+
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 21 123 233355556666667777777888888777655544 56666654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.31 E-value=1.2 Score=37.31 Aligned_cols=142 Identities=18% Similarity=0.153 Sum_probs=85.5
Q ss_pred HHHHhCCHHHHHHHHH--HHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHhh
Q 045820 46 DKIKASPLKERIDIFN--SIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF-------FSNHLMVGRVEEAYEMLMNVKN 116 (225)
Q Consensus 46 ~~~~~~~~~~a~~~~~--~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~-------~~~~~~~g~~~~a~~~~~~m~~ 116 (225)
.++-+++++++.++.+ ++. ..++ ..-.+.++.-+-+.|..+.|+++ |+-..+.|+++.|.++-++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~--- 343 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKE--- 343 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCC---
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHh---
Confidence 3557889999877764 222 1122 44488888888999999999987 4444889999999987332
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc
Q 045820 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-------TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV 189 (225)
Q Consensus 117 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-------~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~ 189 (225)
..+...|..|-+...+.|+++-|+++|.+.....- .-|..-..-|....+. ..-+|.-..++...
T Consensus 344 ---~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~-----~~~~n~af~~~~~l 415 (443)
T PF04053_consen 344 ---LDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEE-----RGDINIAFQAALLL 415 (443)
T ss_dssp ---CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHH-----TT-HHHHHHHHHHH
T ss_pred ---cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHH-----ccCHHHHHHHHHHc
Confidence 34777999999999999999999999987553210 0000001111111111 12367777777778
Q ss_pred CcHHHHHHHHHH
Q 045820 190 GKIHKALLLLFL 201 (225)
Q Consensus 190 g~~~~a~~~~~~ 201 (225)
|++++..+++.+
T Consensus 416 gd~~~cv~lL~~ 427 (443)
T PF04053_consen 416 GDVEECVDLLIE 427 (443)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 888887777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.26 E-value=1.1 Score=34.81 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=66.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
..++..++..+...|+++.+...+++....-- -|...|..+|.+|.+.|+...|++.|+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-------------------~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-------------------YDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-------------------cchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 34567788888888899999999988887543 68899999999999999999999999988
Q ss_pred Hh-----cCCCCCHHHHHHHHHHh
Q 045820 203 YE-----HGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 203 ~~-----~g~~p~~~~~~~ll~~~ 221 (225)
.+ -|+.|...+.....+..
T Consensus 214 ~~~~~edlgi~P~~~~~~~y~~~~ 237 (280)
T COG3629 214 KKTLAEELGIDPAPELRALYEEIL 237 (280)
T ss_pred HHHhhhhcCCCccHHHHHHHHHHh
Confidence 65 49999998888776664
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.19 E-value=2 Score=39.15 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--------------------HhcCCHHHHHHHH
Q 045820 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--------------------LMVGRVEEAYEML 111 (225)
Q Consensus 52 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------~~~g~~~~a~~~~ 111 (225)
+...|...|+.-.+-. .-+...+....+.|++..+++.|..+.-.. ...++..+|..-|
T Consensus 507 Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~f 585 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEF 585 (1238)
T ss_pred HHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHH
Confidence 3444444444443332 225556777777788888888777763222 4567777777777
Q ss_pred HHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 112 MNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 112 ~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..-.+. .| |...|..+..+|.+.|.+..|.++|.+....
T Consensus 586 QsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 586 QSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 776653 45 7788999999999999999999999987753
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.17 E-value=1.7 Score=38.05 Aligned_cols=140 Identities=18% Similarity=0.065 Sum_probs=97.9
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC
Q 045820 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNH----------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137 (225)
Q Consensus 68 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 137 (225)
.+|-...-..+-..+...|-...|..+|+.+ ...|+..+|..+..+-.+ -+||...|-.+.+......
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 3444444556777788889999999998887 667888888888777765 3788999999888888888
Q ss_pred CHHHHHHHHHHHHHc-----CCCc-cHHHHHHHH------------------------------------HHhhcCCCC-
Q 045820 138 RSNEAMELLNEAIER-----GVTQ-NVVTLIQLL------------------------------------QRLEMGHIP- 174 (225)
Q Consensus 138 ~~~~a~~~~~~m~~~-----g~~p-~~~t~~~l~------------------------------------~~~~~~~~p- 174 (225)
-+++|.++.++.... |..+ +..-|.... -.......|
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 888888888764322 1111 111222222 001122344
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC
Q 045820 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
+...||.+-.+|.+.++-.+|...+++..+....|
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 46689999999999999999999999998765443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=94.05 E-value=2.3 Score=33.22 Aligned_cols=99 Identities=8% Similarity=0.036 Sum_probs=74.3
Q ss_pred HHHHHHHhh-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 045820 108 YEMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQA 185 (225)
Q Consensus 108 ~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~ 185 (225)
.++.+-+.+ .|-.++..+--.+|..+++.+++.+-.++|+.-... +.. -|...|..+|..
T Consensus 186 YEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~------------------~D~rpW~~FI~l 247 (292)
T PF13929_consen 186 YEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPG------------------NDPRPWAEFIKL 247 (292)
T ss_pred HHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCC------------------CCCchHHHHHHH
Confidence 344444443 345788888999999999999999999999987654 333 688999999999
Q ss_pred HHccCcHHHHHHHHHH-----HHhcCCCCCHHHHHHHHHHhhcC
Q 045820 186 LCGVGKIHKALLLLFL-----MYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 186 ~~~~g~~~~a~~~~~~-----m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
....|+..-...+.++ +.+.|+..+...-..|-+.+.+.
T Consensus 248 i~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~v 291 (292)
T PF13929_consen 248 IVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKV 291 (292)
T ss_pred HHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhc
Confidence 9999998866666553 34556777777777776666554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.04 E-value=1.8 Score=32.02 Aligned_cols=58 Identities=12% Similarity=0.221 Sum_probs=36.5
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKD--GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
+..-...+..|++.+|...|+.+... +-+-.....-.+..++-+.|+++.|...++..
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555567888888888888888765 22223344555677776667766666666555
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.4 Score=30.22 Aligned_cols=128 Identities=18% Similarity=0.147 Sum_probs=81.6
Q ss_pred hhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045820 40 QAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118 (225)
Q Consensus 40 ~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g 118 (225)
....++..+ +.+........++.+...+ ..+...++.+|..|++... ++..+.++ .
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~-------------------~-- 65 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLD-------------------N-- 65 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHH-------------------h--
Confidence 345566655 4678999999999988877 4688899999999987543 22222222 1
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc-CcHHHHHH
Q 045820 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV-GKIHKALL 197 (225)
Q Consensus 119 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~ 197 (225)
..+......+++.|.+.+.++++..++.++... ...+..+... ++++.|.+
T Consensus 66 -~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~---------------------------~~Al~~~l~~~~d~~~a~~ 117 (140)
T smart00299 66 -KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNF---------------------------KDAIVTLIEHLGNYEKAIE 117 (140)
T ss_pred -ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCH---------------------------HHHHHHHHHcccCHHHHHH
Confidence 123344455777777777777777777765321 1223333333 77788887
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 198 LLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 198 ~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
++.+- -+...|..++..+...
T Consensus 118 ~~~~~------~~~~lw~~~~~~~l~~ 138 (140)
T smart00299 118 YFVKQ------NNPELWAEVLKALLDK 138 (140)
T ss_pred HHHhC------CCHHHHHHHHHHHHcc
Confidence 77751 2666777777776543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.5 Score=33.92 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH---------------------HhcCCHHHHHHHHHHHhhCCC-CC-CHHhHHHHHH
Q 045820 75 FNDLLMALVMLNEQDTAVKFFSNH---------------------LMVGRVEEAYEMLMNVKNDGL-KP-DVYTYTAIMD 131 (225)
Q Consensus 75 ~~~li~~~~~~~~~~~a~~~~~~~---------------------~~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~ 131 (225)
|...+..+.+.|++++|...|+.+ ...|++++|...|..+.+.-. .| ....+--+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444444456666666655555 556888888888888875311 11 2233444556
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 045820 132 GFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 132 ~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.+.+.|+.++|..+|++..+.-
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 7778999999999999988753
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=93.74 E-value=2.6 Score=32.92 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=84.2
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhh------------hHHHHHHHHhCCHHHHHHHHHHHHhc---CCCCC--hhhHHH
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQ------------AQRFVDKIKASPLKERIDIFNSIKKD---GTNWS--VSDFND 77 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~l~~~~~~~~~~~a~~~~~~m~~~---g~~~~--~~~~~~ 77 (225)
.....|-..+++++|.+.+.+.-... +.....+++..++++|...+++-.+. .-.|+ ...+..
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~ 119 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44455666677776666665521111 22233445777888888888765332 22333 334666
Q ss_pred HHHHHHhc-CCHHHHHHHHHHH------------------------HhcCCHHHHHHHHHHHhhCCC-----CCCHHh--
Q 045820 78 LLMALVML-NEQDTAVKFFSNH------------------------LMVGRVEEAYEMLMNVKNDGL-----KPDVYT-- 125 (225)
Q Consensus 78 li~~~~~~-~~~~~a~~~~~~~------------------------~~~g~~~~a~~~~~~m~~~g~-----~p~~~~-- 125 (225)
+-..|-+. |+++.|.+.|++. .+.|++++|.++|++....-. +.++..
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 66667777 7888888888666 788999999999999875432 223322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
++++| .+.-.||...|...+++....
T Consensus 200 l~a~l-~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAIL-CHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHH-HHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHhh
Confidence 34444 666679999999999998754
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.73 E-value=3.4 Score=34.09 Aligned_cols=117 Identities=18% Similarity=0.152 Sum_probs=74.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH---H---------
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL---L--------- 165 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l---~--------- 165 (225)
...++.++|.--|..... ..| +...|.-++..|.-.|++.+|.-+-+...+. +.-+..+.+.+ .
T Consensus 345 ~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHH
Confidence 667888999888887664 455 7889999999999999999988776654432 22334444433 1
Q ss_pred ---HHhhcC--CCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 045820 166 ---QRLEMG--HIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220 (225)
Q Consensus 166 ---~~~~~~--~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 220 (225)
...+++ ++|+-. .-+.+..-+..-|..+.++.+++.-.. ..||...-+.|-+.
T Consensus 422 KAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~ 480 (564)
T KOG1174|consen 422 KAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDI 480 (564)
T ss_pred HHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHH
Confidence 333333 344433 334444555566777777777776654 35666655555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=93.69 E-value=3 Score=33.37 Aligned_cols=50 Identities=10% Similarity=0.127 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045820 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 155 (225)
+++..+++++.+.. +-+..+|+-.--++.+.|++++++..++++++....
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 56777777777643 347888999889999999999999999999987764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.7 Score=36.98 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=77.2
Q ss_pred HHHHHHHH-HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHH
Q 045820 56 RIDIFNSI-KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGF 133 (225)
Q Consensus 56 a~~~~~~m-~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~ 133 (225)
..++|-++ ++.+..+|+.+++.|=-.| ...|++++|.++|+.... ++| |...||-+--.+
T Consensus 413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy----------------~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtL 474 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPDVQSGLGVLY----------------NLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATL 474 (579)
T ss_pred HHHHHHHHHHhCCCCCChhHHhhhHHHH----------------hcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHh
Confidence 34444444 3334445555566555555 445666777777777665 467 677899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 134 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
+...+.++|..-|.+..+.. |+ +++...|--+|...|.+++|.+.|-..+
T Consensus 475 AN~~~s~EAIsAY~rALqLq--------------------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRALQLQ--------------------PGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred cCCcccHHHHHHHHHHHhcC--------------------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999988753 33 3455666677888899999988876553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.65 E-value=3 Score=38.40 Aligned_cols=154 Identities=16% Similarity=0.224 Sum_probs=97.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------
Q 045820 43 RFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------ 98 (225)
Q Consensus 43 ~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------ 98 (225)
.++..+....++.+.+....|.+. .|...-++.+.+.+...+....+..++-+.
T Consensus 515 flLq~l~r~sPD~~~qFa~~l~Q~--~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aP 592 (1666)
T KOG0985|consen 515 FLLQQLKRSSPDQALQFAMMLVQD--EEPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAP 592 (1666)
T ss_pred HHHHHHHccChhHHHHHHHHhhcc--CCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccch
Confidence 355555667777777777777664 234455666777777766666665554222
Q ss_pred ------------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhH-----HHHHHHHHhcCCHHHHHHHHHHH
Q 045820 99 ------------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTY-----TAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 99 ------------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~-----~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
.++|-...|++.|..+.+ |+..+..- .-++ .|...-.++++.+++..|
T Consensus 593 qVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~D--IKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkam 669 (1666)
T KOG0985|consen 593 QVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYD--IKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAM 669 (1666)
T ss_pred HHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHH--HHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHH
Confidence 667888888877776654 11111111 1133 344444588899999999
Q ss_pred HHcCCCccHHHHHHHH-------------HHhhc---------------CCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 150 IERGVTQNVVTLIQLL-------------QRLEM---------------GHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 150 ~~~g~~p~~~t~~~l~-------------~~~~~---------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
...+++-|..+...+. ++.+. .+.-|...---.|.+.|+.|++.+.+++.++
T Consensus 670 l~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 670 LSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 8888877776655444 22221 2344555666789999999999998888764
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.51 Score=37.17 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 102 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
-+.++++.++..=...|+-||-++++.+|+.+.+.+++.+|..+...|....
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3566777777777788999999999999999999999999999988876543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=2 Score=30.61 Aligned_cols=120 Identities=9% Similarity=-0.038 Sum_probs=69.1
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 94 (225)
.+..++..-+.......+-.......|..-.+.+..|++++|..+|.-+...+.. +..=|..|-..+-..+++++|...
T Consensus 15 ~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~ 93 (165)
T PRK15331 15 MIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDL 93 (165)
T ss_pred HHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555544444444444444444455555667999999999999988765332 333344444444334555555554
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 95 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
| ...-.-+. -|...+--.-.+|...|+.+.|...|....+.
T Consensus 94 Y----------------~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 94 Y----------------AVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred H----------------HHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 4 43322111 12222223356778888999999998888774
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.20 E-value=3.3 Score=32.38 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=61.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN-DGLKPDVYT-YTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
|...|-.|=..|...|+.+.| ..-|.+-.+ .|-.|++.. |...+-.-....+..++..+|++
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A----------------~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDA----------------LLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred CchhHHHHHHHHHHhcchhHH----------------HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 555666666666555555444 444444333 344444432 33333333333456778888888
Q ss_pred HHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 149 m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
+.+... -|+.+-..|-..+...|++.+|...|+.|.+.
T Consensus 219 al~~D~-------------------~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 219 ALALDP-------------------ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHhcCC-------------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 876543 45666777778888889999999999998874
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.99 E-value=2.1 Score=29.46 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 75 FNDLLMALVMLNEQDTAV-KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 75 ~~~li~~~~~~~~~~~a~-~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.-.++..|++.|...+-. ..++.+...|.-+.-.+++.++...+ .++....-.+-.||.+.|+..++.+++.+.-+.|
T Consensus 72 lKrVi~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 72 LKRVIECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp THHHHHHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 345788888887643332 23555578899999999999987533 5677777788999999999999999999999999
Q ss_pred CC
Q 045820 154 VT 155 (225)
Q Consensus 154 ~~ 155 (225)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 75
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.35 Score=24.68 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
+|+.|-..|.+.|++++|..++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57888999999999999999999855
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.86 E-value=4.7 Score=33.28 Aligned_cols=133 Identities=11% Similarity=0.075 Sum_probs=99.3
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHH----------------HhcCCHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF----FSNH----------------LMVGRVEEAY 108 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~----------------~~~g~~~~a~ 108 (225)
..++++.|.--|+.-.... +-+...|.-|+..|...|.+.+|.-. ++.| .....-++|.
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence 6789999998888765442 34788899999999999999887754 3333 1112336666
Q ss_pred HHHHHHhhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 045820 109 EMLMNVKNDGLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALC 187 (225)
Q Consensus 109 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~ 187 (225)
+++++-.. +.|+ +..-+.+-..|...|..+++..+++.-...- ||...-+.|-.-++
T Consensus 425 kf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--------------------~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 425 KFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--------------------PDVNLHNHLGDIMR 482 (564)
T ss_pred HHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc--------------------cccHHHHHHHHHHH
Confidence 66665543 4564 4567888899999999999999999877643 78888888888888
Q ss_pred ccCcHHHHHHHHHHHHh
Q 045820 188 GVGKIHKALLLLFLMYE 204 (225)
Q Consensus 188 ~~g~~~~a~~~~~~m~~ 204 (225)
-.+.+.+|++.|....+
T Consensus 483 A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALR 499 (564)
T ss_pred HhhhHHHHHHHHHHHHh
Confidence 88888888887776654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.32 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=22.3
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
+|+.|-..|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47888999999999999999999954
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.73 E-value=3 Score=32.67 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=73.2
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHh
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYT 125 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~ 125 (225)
.++.+++++|+..|.+-++.. +-|.+-|..--.+|++.|..+.|.+ =.+.-.. +.| ...+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVk----------------Dce~Al~--iDp~yska 151 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVK----------------DCESALS--IDPHYSKA 151 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHH----------------HHHHHHh--cChHHHHH
Confidence 458899999999999988762 3467778888889977776655543 2222222 234 4567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~ 167 (225)
|..|=.+|.-.|++++|.+-|.+..+ +.|+..+|-.=++.
T Consensus 152 y~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 99999999999999999999887664 67888888777733
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=2.6 Score=29.83 Aligned_cols=90 Identities=9% Similarity=-0.053 Sum_probs=61.3
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 045820 45 VDKIKASPLKERIDIFNSIKKDGTNWSVSD-FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDV 123 (225)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 123 (225)
...+..|++++|..+|+.+..- .|.... |-.|=-++- ..|++++|...|.....-. +-|.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q----------------~~g~~~~AI~aY~~A~~L~-~ddp 103 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQ----------------AQKHWGEAIYAYGRAAQIK-IDAP 103 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH----------------HHhhHHHHHHHHHHHHhcC-CCCc
Confidence 3345899999999999988765 343333 444444443 3355666666666665533 2255
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+=.+-.++.+.|+.+.|...|+..+...
T Consensus 104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 104 QAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 566666779999999999999999887653
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.65 E-value=2.3 Score=32.45 Aligned_cols=97 Identities=11% Similarity=0.062 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHhh---CC--CCCC
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH---LMVGRVEEAYEMLMNVKN---DG--LKPD 122 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~g~~~~a~~~~~~m~~---~g--~~p~ 122 (225)
+..+.|.-+.++|.+- .--+.-|+.-...|..+|..+.|-..+++. ..+-+.++|+++|.+-.. .+ ...-
T Consensus 72 KayEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma 149 (308)
T KOG1585|consen 72 KAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA 149 (308)
T ss_pred HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 4455566666666543 223345888888999999988887777655 667888999999887543 11 1112
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
..-|...-..+.+...+++|-..|.+-
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 233556666777777887776655443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.36 E-value=4.2 Score=31.50 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=69.4
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------HhcCCH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------LMVGRV 104 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------~~~g~~ 104 (225)
-.+.+.-...++...++..-+.++...+.|.+.-.+.||.+.|...|++. .-..++
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~ 268 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNF 268 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccch
Confidence 34556666777777777655667777778888888888888888888754 334666
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..|...|+++.... ..|+..-|.=.-+..-.|+..+|.+.++.|+..
T Consensus 269 a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 269 AEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77777777766542 224444444333444467888888888888764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.4 Score=36.64 Aligned_cols=84 Identities=19% Similarity=0.146 Sum_probs=60.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHH---------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHH
Q 045820 69 NWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127 (225)
Q Consensus 69 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 127 (225)
+.+...|+.+-.+|.+.|++++|...|+.. ...|+.++|...+.+..+.+ +. -|.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n~--~f~ 147 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--NL--KFS 147 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--ch--hHH
Confidence 346677999999999999999999999764 66799999999999988742 11 222
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHHHHcCCCc
Q 045820 128 AIMD--GFCKVGRSNEAMELLNEAIERGVTQ 156 (225)
Q Consensus 128 ~ll~--~~~~~g~~~~a~~~~~~m~~~g~~p 156 (225)
.+.. .+...++..+..++++...+.|...
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 1111 1112234457888999999988643
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.14 E-value=2.1 Score=27.83 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
|.-+..+-++.+....+.|+.....+.|.||.|..++..|.++|+-.+..
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34456666777777889999999999999999999999999999998854
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.11 E-value=2.1 Score=39.69 Aligned_cols=113 Identities=12% Similarity=0.136 Sum_probs=64.9
Q ss_pred CChhhcchhhcCcchhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHH-----------------HHHHhc
Q 045820 24 PSAAESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLL-----------------MALVML 85 (225)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li-----------------~~~~~~ 85 (225)
++++.|+..+..+....++...+.+ +.+.+.+|+.++ +|+...+..+. -+|.++
T Consensus 894 ~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~ 965 (1265)
T KOG1920|consen 894 KRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERC 965 (1265)
T ss_pred HHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 3445555555555544455555555 445555555543 44444444444 345555
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYT--YTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 86 ~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
|+.++|...+. .+|+|.+|..+-.++.. .-|... --.|..-+...++.-+|-++..+-.
T Consensus 966 GklekAl~a~~---~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 966 GKLEKALKAYK---ECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred ccHHHHHHHHH---HhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 66666666555 45888888888777653 223322 3566777777777777766666544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.76 E-value=3.6 Score=29.46 Aligned_cols=122 Identities=11% Similarity=0.162 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHhhCCCCCCH
Q 045820 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML-------------MNVKNDGLKPDV 123 (225)
Q Consensus 57 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~-------------~~m~~~g~~p~~ 123 (225)
.+.++.+.+.++.|+...|..+|+.+.+.|++....+++..-.-.....-|..++ -.|.. -.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLk-----RL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLK-----RL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHH-----Hh
Confidence 4556667788999999999999999999999887777664432222222222222 12211 01
Q ss_pred H-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 045820 124 Y-TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 124 ~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
. .+..++..+...|++-+|.++.....+ .+......++.+..+.+|...-..+++-.
T Consensus 89 ~~~~~~iievLL~~g~vl~ALr~ar~~~~----------------------~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 89 GTAYEEIIEVLLSKGQVLEALRYARQYHK----------------------VDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHcCC----------------------cccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 344555556666666666666555322 12223345667777777766555565555
Q ss_pred Hhc
Q 045820 203 YEH 205 (225)
Q Consensus 203 ~~~ 205 (225)
.++
T Consensus 147 ~~~ 149 (167)
T PF07035_consen 147 EER 149 (167)
T ss_pred HHh
Confidence 543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.68 E-value=2.4 Score=27.26 Aligned_cols=61 Identities=18% Similarity=0.088 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCccHHHHHHHH
Q 045820 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI-ERGVTQNVVTLIQLL 165 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~l~ 165 (225)
|.-+..+-++.+....+.|+....++.++||.|..++..|.++|+-.+ +.|. +...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 455666777777788899999999999999999999999999999887 4442 333555554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.64 E-value=5.7 Score=31.44 Aligned_cols=99 Identities=14% Similarity=0.198 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhH
Q 045820 51 SPLKERIDIFNSIKKDGT---NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTY 126 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~ 126 (225)
-...++..+|+.|++... .++...+..++.. ...+.+. -.+.++.+|+.+.+.|+.. |..-+
T Consensus 117 ~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~------------l~~~~E~~Y~~L~~~~f~kgn~LQ~ 182 (297)
T PF13170_consen 117 EIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE------------LAERMEQCYQKLADAGFKKGNDLQF 182 (297)
T ss_pred HHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH------------HHHHHHHHHHHHHHhCCCCCcHHHH
Confidence 357789999999998732 4556666666554 3444432 2467788888898888877 33233
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHcCCCccHHHHHH
Q 045820 127 TAIMDGFCKVGR---SNEAMELLNEAIERGVTQNVVTLIQ 163 (225)
Q Consensus 127 ~~ll~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~t~~~ 163 (225)
-+-+-+++.... ..++..+++.+.+.|+++....|..
T Consensus 183 LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 183 LSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 333334444332 3478889999999999866555543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.62 E-value=7.8 Score=33.99 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=20.8
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
.--=.+|-+.|+-.+|.++++++....
T Consensus 821 eEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 821 EEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 334467888999999999999987653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.51 E-value=5.7 Score=35.86 Aligned_cols=33 Identities=15% Similarity=-0.001 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
+-...|..||..++...++..|.+.+.+|.++-
T Consensus 1328 r~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1328 RCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 445689999999999999999999999998764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.35 E-value=5.9 Score=33.54 Aligned_cols=207 Identities=15% Similarity=0.107 Sum_probs=117.3
Q ss_pred hhHhhhcCCCCCChhhcchhhcCcchh-h------------hHHHHH-HH----HhCCHHHHHHHHHHHHhcCCCCChhh
Q 045820 13 SVLLVDSPSRSPSAAESLDLKENPRSL-Q------------AQRFVD-KI----KASPLKERIDIFNSIKKDGTNWSVSD 74 (225)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~------------~~~l~~-~~----~~~~~~~a~~~~~~m~~~g~~~~~~~ 74 (225)
...|+...+=.|+-+.+++.+.+-... + |..++. .+ ...+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344556666667777777776652211 1 111111 11 245678888999988877 677777
Q ss_pred HHHHHH-HHHhcCCHHHHHHHHHHH----------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 045820 75 FNDLLM-ALVMLNEQDTAVKFFSNH----------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMD 131 (225)
Q Consensus 75 ~~~li~-~~~~~~~~~~a~~~~~~~----------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 131 (225)
|.-.-. .+...|+++.|.+.|+.. ....++++|.+.|.++.+.. ..+...|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 654433 344558999999998864 66799999999999998743 234444444433
Q ss_pred HH-HhcCCH-------HHHHHHHHHHHHc-----CCCccHHHHHH--HHHHhhcC--------CCCCHHHHHHHHHHHHc
Q 045820 132 GF-CKVGRS-------NEAMELLNEAIER-----GVTQNVVTLIQ--LLQRLEMG--------HIPRTITFNNVIQALCG 188 (225)
Q Consensus 132 ~~-~~~g~~-------~~a~~~~~~m~~~-----g~~p~~~t~~~--l~~~~~~~--------~~p~~~~~~~li~~~~~ 188 (225)
+| ...|+. ++|..+|.+.... |-......|.. +=+....+ ...-..=...+=+++.+
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~~~~~~~d~~~~~p~~El~y~WNg~~~ 427 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQAKVDLVDAILVLPALELMYFWNGFPR 427 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhcCCCcchhhhhcCHHHHHHHHHhcccc
Confidence 33 556666 8888888876432 21222222222 22222221 11111112233355666
Q ss_pred cCcHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhh
Q 045820 189 VGKIHKALLLLFLMYEH---GKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 189 ~g~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~ 222 (225)
.++-..-...+...... ...+|......|+.|.|
T Consensus 428 ~~~~~l~~~~~~~l~~~~~~~~~~De~~l~~lL~g~~ 464 (468)
T PF10300_consen 428 MPKEELEIKSLLELEESKNSEEDPDERALRHLLKGAC 464 (468)
T ss_pred CChHHHHHHHHHHHHhcccccCCccHHHHHHHHHHHH
Confidence 65544332444444432 35678888888887765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.35 E-value=3.6 Score=31.74 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=63.9
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-
Q 045820 40 QAQRFVDKIKASPLKERIDIFNSIKKDGT--NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN- 116 (225)
Q Consensus 40 ~~~~l~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~- 116 (225)
-|+.-+..++.|++..|...|..-.+..- .-....+=-|-.++...|+.+.|..+| ..+.+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f----------------~~~~k~ 207 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIF----------------ARVVKD 207 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHH----------------HHHHHh
Confidence 58888888999999999999998877621 222333444667775555555554444 44433
Q ss_pred CCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 117 DGLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 117 ~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.+-.|. ..+.=-+-....+.|+.++|..+|++..+.
T Consensus 208 ~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 208 YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 222222 234445556778889999999999998875
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=91.33 E-value=5.8 Score=34.07 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=46.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
...|++++|...+++..+. .|+...|..+-..+...|+.++|...+++.....
T Consensus 431 ~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 431 LVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4579999999999998875 4788899999999999999999999999887643
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=91.31 E-value=7.6 Score=32.28 Aligned_cols=116 Identities=22% Similarity=0.138 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhh---CCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 104 VEEAYEMLMNVKN---DGL-KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 104 ~~~a~~~~~~m~~---~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
.++...++.+... .|+ ..+......++..+ .|+...+..+++.....+...+......++.........+....
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~ 230 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEH 230 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHH
Confidence 4555555555432 243 45555566655443 78999999988887655444455544444433222222222345
Q ss_pred HHHHHHHHc---cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 180 NNVIQALCG---VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 180 ~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
..+++++.+ .++++.|..++..|.+.|..|....-..++.++
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555666665 588999999999999999888866655555554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.26 E-value=4.3 Score=29.37 Aligned_cols=116 Identities=12% Similarity=0.060 Sum_probs=81.4
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHH---------------------
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSV-SDFNDLLMALVMLNEQDTAVKFFSNH--------------------- 98 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~--------------------- 98 (225)
+..-+.....+..++|+.-|.++.+.|..-=+ -.--.+-...++.|+...|...|++.
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 34455555788899999999999888754211 11222334456778899999989888
Q ss_pred -HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 045820 99 -LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156 (225)
Q Consensus 99 -~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 156 (225)
..+|.++......+-+-..|-+.-...=.+|--+-.+.|++.+|...|..+.+....|
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 5667777777766666554443445556777778889999999999999988755443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.82 E-value=4 Score=32.42 Aligned_cols=132 Identities=15% Similarity=0.123 Sum_probs=75.1
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 67 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
.+.|...-|- |.++|.....|+.-....-.++..|+ +.+.--..|......+-...+..-....++++++..+
T Consensus 15 ~l~p~~rr~~-LsS~fs~e~~w~~r~~~~~kla~~g~------~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~L 87 (418)
T KOG4570|consen 15 QLSPAGRRYL-LSSAFSDEHKWEAREKEHYKLADLGS------LMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYL 87 (418)
T ss_pred cCCchhcchh-hHHHhhhhhhhhHHHHHHHHHhcccc------cchhhhhcCCCcceeehhhhhhccccccchhHHHHHH
Confidence 3444333332 55566555555544333333433443 1111112344555556666665555566677777666
Q ss_pred HHHHHcC---CCcc--HHHHHHHH-------------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 147 NEAIERG---VTQN--VVTLIQLL-------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 147 ~~m~~~g---~~p~--~~t~~~l~-------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
-+++... ..|+ .+++..++ .-...|+-||..+++.+|+.+.+.++..+|.++.-+|...
T Consensus 88 yKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 88 YKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6665431 2222 22333333 1224567799999999999999999999999998888754
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.79 E-value=6.2 Score=30.36 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=78.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHH------------------HhcCCH
Q 045820 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV-MLNEQDTAVKFFSNH------------------LMVGRV 104 (225)
Q Consensus 44 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~------------------~~~g~~ 104 (225)
++.++..++.+.|..+++++++.- |...-...|=..+. ..|.+++|.++++.+ -..|.-
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc
Confidence 444668899999999999988773 44333332322222 348899999999888 334666
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
-+|++-+.+..+. +.-|...|.-+-..|...|++++|-.+++++.-.
T Consensus 137 l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 137 LEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 6777776666553 5569999999999999999999999999999854
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=90.78 E-value=8.8 Score=32.12 Aligned_cols=151 Identities=15% Similarity=0.103 Sum_probs=95.6
Q ss_pred HhCCHHHHHHHHHHHHhcCCC----CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCC
Q 045820 49 KASPLKERIDIFNSIKKDGTN----WS-VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN-DGLKPD 122 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~----~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~-~g~~p~ 122 (225)
+.++++++..+|.++.+.--. .. ...-+.+|+||.. .+++.+.....+..+ .|-.|-
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-----------------~nld~Me~~l~~l~~~~~~s~~ 80 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-----------------NNLDLMEKQLMELRQQFGKSAY 80 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-----------------hhHHHHHHHHHHHHHhcCCchH
Confidence 788999999999988765211 11 3335667888744 345666666666654 232233
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIER--GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
...|-++. +-+.+++++|.+.+..=.+. +-+|..--.|. ...-+|...=+..+.+....|.+.++..+++
T Consensus 81 l~LF~~L~--~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni------~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 81 LPLFKALV--AYKQKEYRKALQALSVWKEQIKGTESPWLDTNI------QQLFSDFFLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred HHHHHHHH--HHHhhhHHHHHHHHHHHHhhhcccccchhhhhH------HHHhhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 33333332 34667899998888766654 43332211110 0011455556778899999999999999999
Q ss_pred HHHhcCCC----CCHHHHHHHHHHhhcC
Q 045820 201 LMYEHGKI----PSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 201 ~m~~~g~~----p~~~~~~~ll~~~~~~ 224 (225)
.|...=++ -+..+|+.++-.++|+
T Consensus 153 ~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 153 RIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 98765443 7999999977777663
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=90.29 E-value=15 Score=33.85 Aligned_cols=92 Identities=10% Similarity=-0.022 Sum_probs=51.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPD----VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~ 175 (225)
..|++++|...+++..+.-...+ ....+.+-..+...|++++|...+.+......... ...+-
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-------------~~~~~ 530 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-------------VYHYA 530 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-------------chHHH
Confidence 35666666666666543211111 12334455556667777777777766654211100 00011
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 176 TITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..++..+-..+...|++++|...+++..+
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23445566677889999999999887654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.84 Score=24.37 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
.+|..+-..|...|++++|.++|++..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46778889999999999999999999975
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.16 E-value=1.1 Score=23.19 Aligned_cols=30 Identities=33% Similarity=0.516 Sum_probs=25.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..+++.+-..|...|++++|+.++++..+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357899999999999999999999987653
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.12 E-value=8.3 Score=33.46 Aligned_cols=123 Identities=19% Similarity=0.177 Sum_probs=81.4
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDT 90 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~ 90 (225)
+....+.+-+.+.|..++|+++-..+.. .+--+++.|+++.|.++-.+.. +..-|..|-++....+++..
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~D~d~----rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~l 684 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELSTDPDQ----RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPL 684 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCCChhh----hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchh
Confidence 4444555666666666666655444332 2333457788888887755443 55669999999999999999
Q ss_pred HHHHHHHH----------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 91 AVKFFSNH----------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 91 a~~~~~~~----------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
|.+.|... ...|+-+....+-...++.|. .|.-..+|...|+++++.+++.+-
T Consensus 685 A~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 685 ASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 99988765 445555555555555555442 355556788899999988887654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.94 Score=23.41 Aligned_cols=29 Identities=31% Similarity=0.322 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 176 TITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..+++.|-..|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45789999999999999999999999865
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=89.92 E-value=6.3 Score=29.10 Aligned_cols=163 Identities=16% Similarity=0.082 Sum_probs=91.4
Q ss_pred hHhhhcCCCCCChhhcchhhcCcchhh----------hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 14 VLLVDSPSRSPSAAESLDLKENPRSLQ----------AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
+.....+...|++.+|.+.|.+..... +.......+.|+++.|...+++..+.--.-....+...+.+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 344456677899999999998854321 1112223499999999999999876622212223444444443
Q ss_pred hcCC-------------HHHHHHHHHHH----HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 84 MLNE-------------QDTAVKFFSNH----LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 84 ~~~~-------------~~~a~~~~~~~----~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
.... ...|...|+.+ ....-..+|...+..+.+. .-..-+ .+..-|.+.|.+..|..-+
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e~-~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHEL-YIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHHH-HHHHHHHCTT-HHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHcccHHHHHHHH
Confidence 2211 23444444444 4455555565555555431 111122 2567789999999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 045820 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196 (225)
Q Consensus 147 ~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 196 (225)
+.+.+.=-. .. -.....-.++.+|-+.|..+.+.
T Consensus 165 ~~v~~~yp~--t~--------------~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 165 QYVIENYPD--TP--------------AAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHSTT--SH--------------HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHCCC--Cc--------------hHHHHHHHHHHHHHHhCChHHHH
Confidence 998875211 00 11235567778888888877443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.76 E-value=5.8 Score=28.43 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=65.4
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCC----------CH-
Q 045820 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP----------RT- 176 (225)
Q Consensus 108 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p----------~~- 176 (225)
.+....+.+.|+.|+...|..+++.+.+.|++.. +.++...++-+|+......+-..+....| -.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3455566778999999999999999999998654 55566668888777766665221111100 11
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHH
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
..+..+++.+...|++-+|.++.+..
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 26778888999999999999988775
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.27 E-value=5 Score=29.06 Aligned_cols=93 Identities=11% Similarity=0.143 Sum_probs=56.3
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWS--VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVY 124 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 124 (225)
.++.|+.+.|++.|.++++....+. ...+-.+|......+++..+.....+. ..+.+...+.....-..
T Consensus 46 ~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka---------~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 46 YCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA---------ESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH---------HHHHhccchHHHHHHHH
Confidence 4589999999999999988755443 344677888888888887776655443 22211110000011233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
.|..+. +...|++.+|-..|-+..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccC
Confidence 444443 334578888888776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.27 E-value=18 Score=33.47 Aligned_cols=137 Identities=15% Similarity=0.074 Sum_probs=82.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNH-LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
....++.+|.+.-..-.+..|...+-.. ....+...|.++|+...+-. ..|...+....+.|++..+++.|+.+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 3444555555554444444444433333 22337778888888776532 236677889999999999999998883222
Q ss_pred HHc-------------C-CCccHHHHHHHHHHhhc--CC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 150 IER-------------G-VTQNVVTLIQLLQRLEM--GH-IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 150 ~~~-------------g-~~p~~~t~~~l~~~~~~--~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
-+. | ..|...-+.-.+.-... .. +.|...|..+..+|...|....|.++|.+... ++|+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~ 628 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL 628 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH
Confidence 111 1 01111222222211111 12 24788999999999999999999999988764 4454
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.90 E-value=6.6 Score=27.89 Aligned_cols=53 Identities=8% Similarity=0.248 Sum_probs=27.2
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~ 116 (225)
.++.++.+++..+++-|+-- +|...... +..++.. ...|++++|..+|+++.+
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~-~~~~~l~--------------i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELD-LFDGWLH--------------IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHH-HHHHHHH--------------HHhCCHHHHHHHHHHHhc
Confidence 34556666666666666543 33333222 1122211 455666666666666654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.81 E-value=12 Score=30.81 Aligned_cols=166 Identities=17% Similarity=0.144 Sum_probs=102.9
Q ss_pred hhhhHHHHHHH---HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHH--------------
Q 045820 38 SLQAQRFVDKI---KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM--LNEQDTAVKFFSNH-------------- 98 (225)
Q Consensus 38 ~~~~~~l~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~-------------- 98 (225)
..+|+.+-..+ -.|+-..|.++-.+-.+. +.-|..-.-.++.+-.. .|+.+.|.+-|+.|
T Consensus 82 drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgL 160 (531)
T COG3898 82 DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGL 160 (531)
T ss_pred hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHH
Confidence 34455554432 456666666655443222 23344444445544333 48888888888888
Q ss_pred ----HhcCCHHHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHH--HHHHH-----
Q 045820 99 ----LMVGRVEEAYEMLMNVKNDGLKPDV-YTYTAIMDGFCKVGRSNEAMELLNEAIER-GVTQNVVT--LIQLL----- 165 (225)
Q Consensus 99 ----~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t--~~~l~----- 165 (225)
-+.|+.+.|.+.-++--. ..|.. -.+.+.+...|..|+++.|+++++.-+.. -+.++..- -..|+
T Consensus 161 yleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 456777777776665443 35554 36788999999999999999999887653 34555441 12222
Q ss_pred -------------HHhhcCCCCCHHHHHHH-HHHHHccCcHHHHHHHHHHHHhcC
Q 045820 166 -------------QRLEMGHIPRTITFNNV-IQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 166 -------------~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
.....++.||...-..+ -.++.+-|+..++-.+++.+=+.-
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 239 SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC
Confidence 22234556665543333 367788899999988888886653
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.72 E-value=3.5 Score=26.85 Aligned_cols=49 Identities=12% Similarity=0.208 Sum_probs=35.4
Q ss_pred cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc-CCCCCHHHHHHHHHH
Q 045820 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH-GKIPSRTSHDMLIKK 220 (225)
Q Consensus 170 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~ 220 (225)
....|+.....+.+.+|-+.+++..|.++|+-.+.+ |- ...+|..+++-
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lqE 88 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQE 88 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHHH
Confidence 344599999999999999999999999999998853 42 23378777764
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.39 E-value=1.5 Score=23.42 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
+|..+-.+|.+.|++++|+++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 57778899999999999999999999863
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=88.34 E-value=11 Score=29.63 Aligned_cols=143 Identities=9% Similarity=0.077 Sum_probs=91.4
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCCHHhHHHHHHHHHh-cC-CHHHH
Q 045820 66 DGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN-DGLKPDVYTYTAIMDGFCK-VG-RSNEA 142 (225)
Q Consensus 66 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~g-~~~~a 142 (225)
.|.+++..-.-.++..+...-...+....++-...+..+.+|+++|+.... ..+--|..+-..+++.... .+ ....-
T Consensus 106 ~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~al 185 (292)
T PF13929_consen 106 MGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNAL 185 (292)
T ss_pred cCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhH
Confidence 366666666666666655544433333322222466667778888774432 2345566666666666655 22 22223
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHh
Q 045820 143 MELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH-GKIPSRTSHDMLIKKL 221 (225)
Q Consensus 143 ~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~ 221 (225)
.++.+-+... .+..++..+.-.+|..+++.+++.+-.++++..... +..-|..-|..+|+..
T Consensus 186 YEvV~~l~~t-----------------~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li 248 (292)
T PF13929_consen 186 YEVVDFLVST-----------------FSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLI 248 (292)
T ss_pred HHHHHHHHhc-----------------cccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHH
Confidence 3344444321 123488889999999999999999999999988765 6777889999999887
Q ss_pred hcCC
Q 045820 222 DQQP 225 (225)
Q Consensus 222 ~~~g 225 (225)
.+.|
T Consensus 249 ~~sg 252 (292)
T PF13929_consen 249 VESG 252 (292)
T ss_pred HHcC
Confidence 7765
|
|
| >PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.23 E-value=2.3 Score=23.36 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=30.8
Q ss_pred HHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 045820 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220 (225)
Q Consensus 183 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 220 (225)
+....+.|-..++..++++|.+.|+..+...|..+++-
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 33444567778899999999999999999999988764
|
This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.10 E-value=11 Score=29.38 Aligned_cols=115 Identities=12% Similarity=0.029 Sum_probs=75.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH--------------
Q 045820 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-------------- 166 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~-------------- 166 (225)
.|.+.-....+++..+...+-++.....+.+.-.+.||.+.|...|++..+..-+.|..+++.+.-
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 355555566666666655455777778888888889999999999998887766677777776661
Q ss_pred ----HhhcCC---CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 045820 167 ----RLEMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217 (225)
Q Consensus 167 ----~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 217 (225)
....-+ .-|...-|.=.-+..-.|+...|.+.++.|... -|...+-+++
T Consensus 270 ~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 270 EAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 111111 123344455445555678888999999999865 3444444433
|
|
| >PRK10564 maltose regulon periplasmic protein; Provisional | Back alignment and domain information |
|---|
Probab=87.92 E-value=1.6 Score=34.26 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=36.4
Q ss_pred CCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 045820 118 GLKPDVYT-YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161 (225)
Q Consensus 118 g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 161 (225)
.+.||+.+ ||.-|....+.||+++|+.++++.++.|..--..||
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 35577776 789999999999999999999999999986444343
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.84 E-value=4.2 Score=35.53 Aligned_cols=106 Identities=22% Similarity=0.299 Sum_probs=70.0
Q ss_pred HHhCCHHHHHHHHH-----H-HHhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHH----------HhcCCHHHHH
Q 045820 48 IKASPLKERIDIFN-----S-IKKDGTNWSV---SDFNDLLMALVMLNEQDTAVKFFSNH----------LMVGRVEEAY 108 (225)
Q Consensus 48 ~~~~~~~~a~~~~~-----~-m~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~----------~~~g~~~~a~ 108 (225)
+.+|+.++|..+.- + +.+-+-+.|. .+.-.+-.-+.+...+..|.++|..| ...++|++|+
T Consensus 714 iSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAF 793 (1081)
T KOG1538|consen 714 ISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAF 793 (1081)
T ss_pred hcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhH
Confidence 36777777776632 1 2232333333 33333344445556778888888888 6789999999
Q ss_pred HHHHHHhhCCCCCCHHh-----------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045820 109 EMLMNVKNDGLKPDVYT-----------YTAIMDGFCKVGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 109 ~~~~~m~~~g~~p~~~~-----------~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 155 (225)
.+-++..+ ..||++. |.-.=.||.|+|+-.+|.++++++.+..+.
T Consensus 794 alAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav~ 849 (1081)
T KOG1538|consen 794 ALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVA 849 (1081)
T ss_pred hhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhhh
Confidence 99887665 3455432 333457899999999999999998766543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.83 E-value=7.2 Score=27.10 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=40.9
Q ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 38 SLQAQRFVDKIKASPLKERIDIFNSIKKD--GTNWSVSDFNDLLMALVMLNEQDTAVKFFSN 97 (225)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 97 (225)
..-++.-...++.|++++|...|+.+..+ .-+-...+--.++.+|-+.++++.|...++.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 33455666678999999999999999876 2233445566688888666665555544443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.79 E-value=0.062 Score=37.23 Aligned_cols=87 Identities=16% Similarity=0.282 Sum_probs=51.0
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 128 (225)
+++.++.....++.+...+..-+....+.++..|++.++.++...+++.. ..-+.+.+.+++ .+.| .|..
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-~~yd~~~~~~~c---~~~~------l~~~ 88 (143)
T PF00637_consen 19 ERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-NNYDLDKALRLC---EKHG------LYEE 88 (143)
T ss_dssp TTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-SSS-CTHHHHHH---HTTT------SHHH
T ss_pred hCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-cccCHHHHHHHH---Hhcc------hHHH
Confidence 34566667777777777766677888999999999988777766666532 122333333332 2222 2333
Q ss_pred HHHHHHhcCCHHHHHHH
Q 045820 129 IMDGFCKVGRSNEAMEL 145 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~ 145 (225)
.+-.|.+.|++++|..+
T Consensus 89 a~~Ly~~~~~~~~al~i 105 (143)
T PF00637_consen 89 AVYLYSKLGNHDEALEI 105 (143)
T ss_dssp HHHHHHCCTTHTTCSST
T ss_pred HHHHHHHcccHHHHHHH
Confidence 34456666666666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=87.44 E-value=15 Score=30.17 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=92.7
Q ss_pred HHHHHHHHhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------------------Hh---cCCHHHHH
Q 045820 57 IDIFNSIKKDGT---NWSVSDFNDLLMALVMLNEQDTAVKFFSNH----------------------LM---VGRVEEAY 108 (225)
Q Consensus 57 ~~~~~~m~~~g~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----------------------~~---~g~~~~a~ 108 (225)
...+.+|+++=- ..+..+...++-+|-...++|...++.+.+ .+ .|+.++|.
T Consensus 123 ~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al 202 (374)
T PF13281_consen 123 AKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKAL 202 (374)
T ss_pred HHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHH
Confidence 344445554422 223344445666788889999999998888 33 79999999
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCccHH---HHHHHH-----------
Q 045820 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKV---------GRSNEAMELLNEAIERGVTQNVV---TLIQLL----------- 165 (225)
Q Consensus 109 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~---t~~~l~----------- 165 (225)
+++..+....-.++..+|..+-..|-.. ...++|...|.+-=+ +.||.. -+.+|+
T Consensus 203 ~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~ 280 (374)
T PF13281_consen 203 QILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSE 280 (374)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchH
Confidence 9999965555566777776655554321 235666666654322 222211 111122
Q ss_pred -----------HHhhcC---CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 166 -----------QRLEMG---HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 166 -----------~~~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
...++| -..|--.+.+++.++.-.|+.++|.+..+.|.+.
T Consensus 281 el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 281 ELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 001122 3356667899999999999999999999999875
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=87.38 E-value=8.6 Score=27.46 Aligned_cols=86 Identities=15% Similarity=-0.094 Sum_probs=63.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|..+|.-+.-.+ .-+..=|..+-..|-..+++++|...|...-..+. -|...
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-------------------~dp~p 107 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-------------------NDYRP 107 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-------------------CCCCc
Confidence 46688888888888776532 12444566777777788999999999988766553 23444
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
+-..-.||...|+.++|...|...++
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 55566888899999999999988877
|
|
| >PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=86.95 E-value=3.3 Score=22.78 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=22.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 130 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
+....+.|-.+++..++++|++.|+..+...|..++
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 334455666667777777777777775555555444
|
This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length. |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=86.46 E-value=9 Score=26.75 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=63.6
Q ss_pred HHhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC-H
Q 045820 63 IKKDGTNWSVSD--FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR-S 139 (225)
Q Consensus 63 m~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~ 139 (225)
|.+.+..++..+ .|+++.-.+..+++....++++.+ ..+...... | ..+-.+|++++.+.++..- -
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l---------~~l~~~~~~-~-~~~~ssf~~if~SlsnSsSaK 96 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHL---------HFLNTDNII-G-WLDNSSFHIIFKSLSNSSSAK 96 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHH---------HHhhHHHHh-h-hcccchHHHHHHHHccChHHH
Confidence 454556555543 677777777777777777777765 111111111 1 2466689999999988876 5
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHhhcC
Q 045820 140 NEAMELLNEAIERGVTQNVVTLIQLLQRLEMG 171 (225)
Q Consensus 140 ~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~ 171 (225)
--+..+|+-|++.+.+++..-|..+|.....|
T Consensus 97 ~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 97 LTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 56789999999988885555555555544444
|
|
| >PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF | Back alignment and domain information |
|---|
Probab=86.37 E-value=0.88 Score=31.11 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=28.1
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 82 (225)
+.|.-.+|..+|+.|.++|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 457788999999999999999987 99998765
|
The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity []. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.31 E-value=1.8 Score=23.33 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=27.3
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 045820 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217 (225)
Q Consensus 181 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 217 (225)
.+..+|...|+.+.|.+++++....|-.|-..--..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~L 40 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGDEAQRQEARAL 40 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3678999999999999999999976644433333333
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.24 E-value=9.4 Score=26.78 Aligned_cols=18 Identities=0% Similarity=0.263 Sum_probs=9.8
Q ss_pred HHhCCHHHHHHHHHHHHh
Q 045820 48 IKASPLKERIDIFNSIKK 65 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~ 65 (225)
+...+++++..+++.|+-
T Consensus 21 L~~~d~~D~e~lLdALrv 38 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV 38 (153)
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 355555555555555543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.02 E-value=2.7 Score=20.60 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.+|..+-.+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 5788889999999999999999999886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.54 E-value=16 Score=28.84 Aligned_cols=141 Identities=14% Similarity=0.179 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------------------------------
Q 045820 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------------------------------- 98 (225)
Q Consensus 53 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---------------------------------- 98 (225)
..+|.++|.-+.++.-+ ..+-+.+|.++....+..+|...|...
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 45678888877766322 344455777777777777776655332
Q ss_pred ------------HhcCCHHHHHHHHHHHhhCCCCCC-----------------HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 99 ------------LMVGRVEEAYEMLMNVKNDGLKPD-----------------VYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 99 ------------~~~g~~~~a~~~~~~m~~~g~~p~-----------------~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
..+..++++.++....+.. .-|+ ..+++..-.+|..+|.+.+|..+..+.
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykgd-yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ 305 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKGD-YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRA 305 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcCC-cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 2224445555555444321 1111 223455667888999999999888887
Q ss_pred HHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh-----cCCCCCHHHHH
Q 045820 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE-----HGKIPSRTSHD 215 (225)
Q Consensus 150 ~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~ 215 (225)
+...- .+...|-.++..++..|+--.+.+-++.+.+ -|+..|...++
T Consensus 306 ltldp-------------------L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 306 LTLDP-------------------LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred hhcCh-------------------hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 76542 6778888999999999997777777766642 38888777665
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.47 E-value=7.6 Score=25.04 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh-cCCCCCHHHHHHHHHH
Q 045820 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE-HGKIPSRTSHDMLIKK 220 (225)
Q Consensus 171 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~ 220 (225)
...|+.....+-+.+|-+.+++..|.++|+-.+. .|. +..+|..+++-
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe 85 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE 85 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence 3449999999999999999999999999998874 332 55578777654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.39 E-value=3.9 Score=36.61 Aligned_cols=93 Identities=18% Similarity=0.164 Sum_probs=57.8
Q ss_pred CCCCCChhhcchhhcC-cchhhhHH-HHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 20 PSRSPSAAESLDLKEN-PRSLQAQR-FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN 97 (225)
Q Consensus 20 ~~~~~~~~~a~~~~~~-~~~~~~~~-l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 97 (225)
+.+.|++++|...+-+ ........ +...+.+........+++.+.+.|+. +...-+.||++|.+.++.++-.++.+.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 4566777777655433 22222222 33344666677777778888888876 667778899999999998887776654
Q ss_pred HH---hcCCHHHHHHHHHH
Q 045820 98 HL---MVGRVEEAYEMLMN 113 (225)
Q Consensus 98 ~~---~~g~~~~a~~~~~~ 113 (225)
-- ..-|++.|++++.+
T Consensus 457 ~~~g~~~fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 457 CDKGEWFFDVETALEILRK 475 (933)
T ss_pred CCCcceeeeHHHHHHHHHH
Confidence 31 01135666655443
|
|
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.61 E-value=16 Score=29.02 Aligned_cols=156 Identities=13% Similarity=0.152 Sum_probs=80.5
Q ss_pred CCCCCCchhh-HhhhcCCCCCCh-hhcchhhcC-cchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 045820 5 AANSPTPFSV-LLVDSPSRSPSA-AESLDLKEN-PRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA 81 (225)
Q Consensus 5 ~~~~~~~~~~-~l~~~~~~~~~~-~~a~~~~~~-~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 81 (225)
++.+|..... .+-+.+.+.|-. .-|.++|.. +...+.+.++..+|.|..+.-+-- =++|+..+-...-..
T Consensus 160 nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~i~~lis~Lrkg~md~rLme-------ffPpnkrs~E~Fak~ 232 (412)
T KOG2297|consen 160 NGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKDINDLISSLRKGKMDDRLME-------FFPPNKRSVEHFAKY 232 (412)
T ss_pred CCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhccHHHHHHHHHhcChHhHHHH-------hcCCcchhHHHHHHH
Confidence 3455554444 333344444432 234445544 556667777777777766653321 146666665555555
Q ss_pred HHhcCCHH-----------HHHH-----HHHHHHhcCCHHHHHHHH-HHHhhCCCCCCHH----hHHHHHHHHHhcCCHH
Q 045820 82 LVMLNEQD-----------TAVK-----FFSNHLMVGRVEEAYEML-MNVKNDGLKPDVY----TYTAIMDGFCKVGRSN 140 (225)
Q Consensus 82 ~~~~~~~~-----------~a~~-----~~~~~~~~g~~~~a~~~~-~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~ 140 (225)
|.+.|--+ .+.+ +-+++.+...+++..... ++|++.++ |++. .|..+|++---+.+-+
T Consensus 233 Ft~agL~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkee 311 (412)
T KOG2297|consen 233 FTDAGLKELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEE 311 (412)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHH
Confidence 55554322 2211 122334455555555444 34565554 5433 4777776644332111
Q ss_pred -HHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHH
Q 045820 141 -EAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195 (225)
Q Consensus 141 -~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 195 (225)
-|.+.++ ...+|..|+.++|..|+.+-+
T Consensus 312 lva~qalr---------------------------hlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 312 LVAEQALR---------------------------HLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHHHHHHH---------------------------HHHhhhHHHHHHhcCChHHHH
Confidence 1222222 235788899999999987754
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.50 E-value=30 Score=30.99 Aligned_cols=58 Identities=10% Similarity=0.033 Sum_probs=33.3
Q ss_pred CCCchhhHhhhcCCCCCChhhcchhhcCcchhh------------hHHHHHHHHhCCHHHHHHHHHHHHh
Q 045820 8 SPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQ------------AQRFVDKIKASPLKERIDIFNSIKK 65 (225)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~l~~~~~~~~~~~a~~~~~~m~~ 65 (225)
.|.-.|..+...--.+|+.+-|..+++.-...+ -..+-.++++|+.+....++-+|++
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 444455555555566788888877765522111 1124445577777777766655544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=84.35 E-value=21 Score=29.24 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc---cCcHHHHHHHHHHHHh
Q 045820 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG---VGKIHKALLLLFLMYE 204 (225)
Q Consensus 128 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~ 204 (225)
.++-+|....+++.+..+++.|.......- .-....--...-++.+ .|+.++|.+++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~---------------~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~ 210 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDV---------------ANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE 210 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccch---------------hcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh
Confidence 445579999999999999999987632100 0111112233344555 8999999999999776
Q ss_pred cCCCCCHHHHHHHHHHh
Q 045820 205 HGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 205 ~g~~p~~~~~~~ll~~~ 221 (225)
..-.++..||..+-..|
T Consensus 211 ~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 211 SDENPDPDTLGLLGRIY 227 (374)
T ss_pred ccCCCChHHHHHHHHHH
Confidence 66778888888776655
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.04 E-value=23 Score=29.30 Aligned_cols=76 Identities=9% Similarity=-0.039 Sum_probs=40.4
Q ss_pred CCCChhhcchhhcCcchhhhHHHHH-------HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045820 22 RSPSAAESLDLKENPRSLQAQRFVD-------KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94 (225)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~l~~-------~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 94 (225)
-.|+++.|.+-|+-|-...-..++. +=+.|.-+.|.+.-++--... +--...+...+...|..||++.|+++
T Consensus 132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHH
Confidence 3455555555555443333222211 114455555555444433221 11345577788888888888888888
Q ss_pred HHHH
Q 045820 95 FSNH 98 (225)
Q Consensus 95 ~~~~ 98 (225)
.+.-
T Consensus 211 vd~~ 214 (531)
T COG3898 211 VDAQ 214 (531)
T ss_pred HHHH
Confidence 7654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.00 E-value=14 Score=26.76 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=27.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPD--VYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
.+.|+.+.|.+.|.++.+....+. +..+=.+|....-.+++..+...+.+...
T Consensus 47 ~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 47 CKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555555555555555555433332 22344455555555555555555555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=83.82 E-value=26 Score=29.78 Aligned_cols=39 Identities=8% Similarity=-0.049 Sum_probs=25.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhc-CCCCCHHHHHHHHH
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEH-GKIPSRTSHDMLIK 219 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~ 219 (225)
+=-+.-++...+++++|.+.|..+.+. .+ +..+|..+.-
T Consensus 308 ~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--Ska~Y~Y~~a 347 (468)
T PF10300_consen 308 YFELAWCHMFQHDWEEAAEYFLRLLKESKW--SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHchHHHHHHHHHHHHhcccc--HHHHHHHHHH
Confidence 334445577788899999999999864 33 3444444433
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.62 E-value=27 Score=29.83 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=32.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 045820 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198 (225)
Q Consensus 130 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 198 (225)
-..+.+.|++..|..-+.++++.. + -|...|..--.||.+.|.+..|..=
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P------------------~Da~lYsNRAac~~kL~~~~~aL~D 414 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-P------------------EDARLYSNRAACYLKLGEYPEALKD 414 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-C------------------chhHHHHHHHHHHHHHhhHHHHHHH
Confidence 456778889999999999988765 2 3444555555555555555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=83.05 E-value=7.6 Score=36.27 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=19.3
Q ss_pred CCchhhHhhhcCCCCC--ChhhcchhhcCcc
Q 045820 9 PTPFSVLLVDSPSRSP--SAAESLDLKENPR 37 (225)
Q Consensus 9 ~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~ 37 (225)
|..+.-.|+++|.+.+ .+++++......+
T Consensus 789 ~~~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 789 PDKFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred cchhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3344448888988888 6677776655544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=83.00 E-value=13 Score=25.82 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=43.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCC-CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGL-KP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.+.|++++|.+.|+.+...-. .| ...+-=-++.+|-+.+++++|...+++.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 467999999999999987521 11 34456668999999999999999999998764
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=82.93 E-value=25 Score=29.95 Aligned_cols=67 Identities=12% Similarity=0.196 Sum_probs=42.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVVTLIQLL 165 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~l~ 165 (225)
-+.|+.++|.+.|.+|.+....- ..-....++.++...+.+.++..++.+--+.... .-...|+..+
T Consensus 270 rklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 270 RKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 35578888888888876532111 2235666788888888888888888876543332 2223555544
|
The molecular function of this protein is uncertain. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.86 E-value=4.1 Score=19.90 Aligned_cols=29 Identities=24% Similarity=0.443 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.+|..+-.+|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46888889999999999999999998864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.82 E-value=1.3 Score=38.85 Aligned_cols=95 Identities=12% Similarity=0.045 Sum_probs=67.8
Q ss_pred CCCCchhhHhhhcCCCCCChhhcchhhcCcc-hhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 7 NSPTPFSVLLVDSPSRSPSAAESLDLKENPR-SLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
.|...++++=+.++...+++++-.++-...+ ..||.|+...| +.|+.++|...+.+.... .-...+|.+
T Consensus 712 ipdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~ 782 (829)
T KOG2280|consen 712 IPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLR 782 (829)
T ss_pred CcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHH
Confidence 4555777777889999999988888877776 78899988866 889999998887654322 157788888
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 85 LNEQDTAVKFFSNHLMVGRVEEAYEMLMN 113 (225)
Q Consensus 85 ~~~~~~a~~~~~~~~~~g~~~~a~~~~~~ 113 (225)
.|++.+|.++= ++..+...-.+++..
T Consensus 783 ~~~~~eAad~A---~~~rd~~~L~ev~~~ 808 (829)
T KOG2280|consen 783 VGDVKEAADLA---AEHRDGAELSEVLSK 808 (829)
T ss_pred hccHHHHHHHH---HHhcChHHHHHHHHh
Confidence 88887776643 233454544455443
|
|
| >PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 | Back alignment and domain information |
|---|
Probab=82.51 E-value=11 Score=24.74 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 76 NDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 76 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
++|+.+|... +...+..+++. ...-+++++.+.+. +. .-|..++.-|...|..++|++++.+...
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~-~N~C~~~~~e~~L~---~~------~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRL-PNYCDLEEVEEVLK---EH------GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHcc-CCcCCHHHHHHHHH---Hc------CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 5678888887 66666666553 24556676666553 22 2589999999999999999999999887
|
Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.50 E-value=33 Score=30.04 Aligned_cols=135 Identities=18% Similarity=0.147 Sum_probs=79.4
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF-------FSNHLMVGRVEEAYEMLMNVKNDGLKP 121 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~-------~~~~~~~g~~~~a~~~~~~m~~~g~~p 121 (225)
-.|+++.|..++..+. ...-+.+..-+-+.|-.++|+++ |+-..+.|+++.|.++..+..
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~------ 664 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEAN------ 664 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhc------
Confidence 4566666666544433 23345566666666777777665 444467788888887755433
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------ccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-------QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-------p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 194 (225)
+..-|..|-++..+.+++..|.++|.+....+-- -|..-...+-...+..- ..|.-..+|...|++++
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g-----~~N~AF~~~~l~g~~~~ 739 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQG-----KNNLAFLAYFLSGDYEE 739 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhc-----ccchHHHHHHHcCCHHH
Confidence 5566888888888888888888888776654321 01111111111112111 23444566777888888
Q ss_pred HHHHHHH
Q 045820 195 ALLLLFL 201 (225)
Q Consensus 195 a~~~~~~ 201 (225)
+.+++.+
T Consensus 740 C~~lLi~ 746 (794)
T KOG0276|consen 740 CLELLIS 746 (794)
T ss_pred HHHHHHh
Confidence 8777654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=81.57 E-value=27 Score=28.39 Aligned_cols=131 Identities=17% Similarity=0.070 Sum_probs=82.3
Q ss_pred hcCCCCCChhhcchhhcC-----cchhh--hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 045820 18 DSPSRSPSAAESLDLKEN-----PRSLQ--AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDT 90 (225)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~-----~~~~~--~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~ 90 (225)
+.|...|+-.-|+.-+.. |+-.+ .+.-.-.++.|.++.|..=|+...++ .|+. +....+..+.--.++
T Consensus 80 T~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~--~~s~---~~~~eaqskl~~~~e 154 (504)
T KOG0624|consen 80 TVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQH--EPSN---GLVLEAQSKLALIQE 154 (504)
T ss_pred HHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc--CCCc---chhHHHHHHHHhHHH
Confidence 445555665555544433 22111 11122245999999999999999877 3322 223333433333333
Q ss_pred HHHHHHHH---HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 91 AVKFFSNH---LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 91 a~~~~~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
-..+-..+ ...|+...|......+.+-. +.|...|-.--.+|...|+...|..=+....+..-
T Consensus 155 ~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~ 220 (504)
T KOG0624|consen 155 HWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ 220 (504)
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Confidence 33322222 67899999999999988742 34888899999999999999999877766655443
|
|
| >PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF | Back alignment and domain information |
|---|
Probab=80.96 E-value=1.6 Score=29.81 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=25.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 133 (225)
...|.-.+|..+|.+|.++|-+|| .|+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 456777888888888888888777 477777654
|
The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.83 E-value=19 Score=26.19 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=58.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH----HHHHHH--------
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDV-YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV----TLIQLL-------- 165 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----t~~~l~-------- 165 (225)
++.+..++|+.-|..+++.|..--. ..---+-......|+...|...|++.-+..-.|-.. -..+..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 5556666666666666665443211 111122233455666777777777666554443222 111111
Q ss_pred ----HHhh----cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC
Q 045820 166 ----QRLE----MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 166 ----~~~~----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
...+ .+-..-...-.+|-.+--+.|++.+|.++|..+...--.|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1110 0111122233556666678999999999999998644344
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.81 E-value=42 Score=30.10 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=10.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
.|+.+-..++....|++|.+.+
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=80.58 E-value=35 Score=29.09 Aligned_cols=156 Identities=13% Similarity=0.068 Sum_probs=89.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHH--------HHHH
Q 045820 42 QRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE--------MLMN 113 (225)
Q Consensus 42 ~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~--------~~~~ 113 (225)
..+..+++..+.+..++.=.+-.+. .|+-.+ .-++-+--.+..+.++.++|++..+.|...--.. .++.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAd-AYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--NPDCAD-AYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhH-HHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 3455577777777766665544432 333221 2223333345667888888887733332211111 1112
Q ss_pred HhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcH
Q 045820 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKI 192 (225)
Q Consensus 114 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~ 192 (225)
+......|-..+=.-+-.++.+.|+.++|.+.+.+|.+.. .. -+......||.++...+..
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~------------------~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL------------------DNLNIRENLIEALLELQAY 311 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc------------------chhhHHHHHHHHHHhcCCH
Confidence 2222222223333446667778999999999999998643 11 2345677888999999999
Q ss_pred HHHHHHHHHHHhcCCC-CCHHHHHHHH
Q 045820 193 HKALLLLFLMYEHGKI-PSRTSHDMLI 218 (225)
Q Consensus 193 ~~a~~~~~~m~~~g~~-p~~~~~~~ll 218 (225)
+++..++.+-.+.... --...|+..+
T Consensus 312 ad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 312 ADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHH
Confidence 9999988886543322 2234555443
|
The molecular function of this protein is uncertain. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.53 E-value=21 Score=26.47 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=59.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
+.|+ +.|.+.|-.++..+.--++...-++-.-|. ..+.+++..++.+..+..- .+-.+|...+
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~---------------~~~~~n~eil 181 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN---------------PDDNFNPEIL 181 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC---------------CCCCCCHHHH
Confidence 3344 678888888888776556666667666666 5678999999888776422 1224889999
Q ss_pred HHHHHHHHccCcHHHHH
Q 045820 180 NNVIQALCGVGKIHKAL 196 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~ 196 (225)
.+|.+.|-+.|+.+.|.
T Consensus 182 ~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 182 KSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHhcchhhhh
Confidence 99999999999999875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.9 bits (125), Expect = 3e-08
Identities = 22/157 (14%), Positives = 56/157 (35%), Gaps = 7/157 (4%)
Query: 21 SRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLM 80
+ + L + + + SP +E++ + V
Sbjct: 59 ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH 118
Query: 81 ALV-MLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN---DGLKPDVYTYTAIMDGFCKV 136
+ + +Q + FF L+ ++ A+ +L+ + Y A+M G+ +
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 137 GRSNEAMELLNEAIERGVTQNVVT---LIQLLQRLEM 170
G E + +L + G+T ++++ +Q + R +
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.5 bits (111), Expect = 1e-06
Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 17/124 (13%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+ + + ++ ++ +N +++ G +E +L VK+
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWAR----------------QGAFKELVYVLFMVKD 193
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAME-LLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175
GL PD+ +Y A + + + +E L + + G+ + LL + + +
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 176 TITF 179
+
Sbjct: 254 AVHK 257
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 4e-05
Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 62/230 (26%)
Query: 29 SLDLKENPRSLQAQRFVD--------KIKASPLK---------ERIDIFNS------IKK 65
SL+ P + + F I L + + + N ++K
Sbjct: 362 SLN-VLEPAEYR-KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 66 DGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP---D 122
++S + + L + E + A+ H + + Y + +D L P D
Sbjct: 420 QPKESTIS-IPSIYLELKVKLENEYAL-----H---RSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 123 VYTYTAIMDGFCKVGRSNEAMELLNEA------IER-----GVTQNVV-TLIQLLQRLEM 170
Y Y+ I + E M L +E+ N +++ LQ+L+
Sbjct: 471 QYFYSHIGHHLKNIEHP-ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 171 --GHI-PRTITFNNVIQAL------CGVGKI---HKALLLLFLMYEHGKI 208
+I + ++ A+ I + LL + LM E I
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 1e-04
Identities = 36/239 (15%), Positives = 81/239 (33%), Gaps = 58/239 (24%)
Query: 2 DISAAN--SPTPFSVLLVDSPSRSPSAAESLDL-----KENPRSLQAQRFVDKIKASPLK 54
+ S + + +D S + + E L P+ L + V +P +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--VLTT--NPRR 329
Query: 55 ERIDIFNSIKKDGT----NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEM 110
+ I +DG NW + + L T ++ N L + ++
Sbjct: 330 --LSIIAESIRDGLATWDNWKHVNCDKL----------TTIIESSLNVLEPAEYRKMFDR 377
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE-----AIERGVTQNVVTLIQLL 165
L V P + T ++ ++ M ++N+ +E+ ++ +++ +
Sbjct: 378 LS-V----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP-SRTSHDMLIKKLDQ 223
L + N +H++++ +H IP + S D++ LDQ
Sbjct: 433 LEL-------KVKLENEYA-------LHRSIV------DHYNIPKTFDSDDLIPPYLDQ 471
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 4e-04
Identities = 30/177 (16%), Positives = 53/177 (29%), Gaps = 66/177 (37%)
Query: 31 DLKENPRSLQAQRFVDKIKASP-LKERID-IFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
D+++ P+S+ ++ +D I S +F W +L++Q
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF---------W------------TLLSKQ 75
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+ V+ F VEE L+ + Y +M R M +
Sbjct: 76 EEMVQKF--------VEEV-----------LRIN---YKFLMSPIKTEQRQPSMMTRMYI 113
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALC--------------GVGK 191
+R N Q ++ R + + QAL G GK
Sbjct: 114 E-QRDRLYNDN------QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 225 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.91 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.86 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.78 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.77 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.49 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.41 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.38 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.37 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.35 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.34 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.32 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.29 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.28 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.26 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.26 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.25 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.25 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.24 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.23 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.23 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.23 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.2 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.18 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.17 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.16 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.15 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.11 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.1 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.08 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.08 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.08 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.07 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.04 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.04 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.98 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.98 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.96 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.96 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.94 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.9 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.86 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.82 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.82 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.81 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.8 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.79 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.79 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.79 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.78 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.78 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.76 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.75 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.73 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.72 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.7 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.68 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.61 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.61 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.58 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.51 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.51 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.51 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.51 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.49 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.49 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.49 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.43 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.42 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.39 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.38 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.37 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.37 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.36 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.36 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.35 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.35 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.34 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.33 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.32 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.31 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.31 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.3 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.29 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.28 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.26 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.26 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.24 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.23 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.23 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 98.2 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.17 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.15 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.14 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.14 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.13 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.12 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.12 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.11 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.1 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.09 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.09 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.08 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.08 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.07 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.06 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.06 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.06 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.05 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 98.05 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.05 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.05 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.05 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.05 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.99 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 97.99 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.97 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.97 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.95 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.95 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 97.93 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.93 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.93 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.92 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.91 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.91 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.91 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.9 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.89 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.88 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.85 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.84 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.79 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 97.79 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.78 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.78 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.76 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.76 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.76 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.74 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.72 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.7 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.68 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.62 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.61 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.52 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.49 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.48 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.47 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.45 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.45 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.44 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.39 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.38 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.37 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.37 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.35 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.35 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.35 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.34 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.32 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.31 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.3 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.29 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.25 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.24 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.24 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.23 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.23 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.23 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.22 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.2 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.06 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 97.06 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.01 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.01 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 96.99 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.97 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 96.97 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.96 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 96.96 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.95 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.94 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 96.9 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.87 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.74 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.72 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.67 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 96.66 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 96.55 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.51 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.48 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.46 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 96.45 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.4 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.37 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.35 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.33 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.11 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.02 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.94 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 95.84 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.61 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 95.41 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 95.09 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.04 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.82 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 94.78 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.76 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.43 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.39 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.03 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 94.02 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.65 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 93.65 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.87 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.86 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 92.83 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 92.6 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 92.57 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.87 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 90.63 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 90.6 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 90.38 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 89.71 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 89.1 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 88.73 | |
| 3jxi_A | 260 | Vanilloid receptor-related osmotically activated p | 87.98 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 86.46 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.4 | |
| 3hra_A | 201 | Ankyrin repeat family protein; structural protein; | 86.1 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 85.71 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 84.98 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.6 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 83.92 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.82 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.54 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 83.26 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.38 | |
| 3hra_A | 201 | Ankyrin repeat family protein; structural protein; | 82.06 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=250.84 Aligned_cols=176 Identities=13% Similarity=0.187 Sum_probs=162.8
Q ss_pred hHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045820 41 AQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119 (225)
Q Consensus 41 ~~~l~~~-~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~ 119 (225)
++.++.. ++.|++++|+++|++|++.|+.||..|||+||.+|++.+..+.+ ...+.+++|.++|++|.+.|+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------~~~~~l~~A~~lf~~M~~~G~ 101 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------SPNPGLSRGFDIFKQMIVDKV 101 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------SCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------hhcchHHHHHHHHHHHHHhCC
Confidence 3444554 48999999999999999999999999999999999988765332 356778999999999999999
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-----------------HHhhcCCCCCHHHHHHH
Q 045820 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNV 182 (225)
Q Consensus 120 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~~~~p~~~~~~~l 182 (225)
.||..|||++|.+|++.|++++|+++|++|.+.|+.||..||+++| +|.+.|+.||..||++|
T Consensus 102 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 102 VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 67899999999999999
Q ss_pred HHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 183 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
|.+|++.|++++|.+++++|.+.|+.|+..||+.|+..|+.
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=215.22 Aligned_cols=156 Identities=18% Similarity=0.208 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 045820 54 KERIDIFNSIKKDGTNWSVS-DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG 132 (225)
Q Consensus 54 ~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 132 (225)
..+..+.+.+++.+..+++. .++.+|++| ++.|++++|+++|++|.+.|+.||..|||++|.+
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c----------------~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~ 70 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMC----------------SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYV 70 (501)
T ss_dssp -----------------CHHHHHHHHHHHT----------------TTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHH----------------HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Confidence 34556778888888776654 589999999 5555667778888888999999999999999999
Q ss_pred HHhcCC---------HHHHHHHHHHHHHcCCCccHHHHHHHH-----------------HHhhcCCCCCHHHHHHHHHHH
Q 045820 133 FCKVGR---------SNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQAL 186 (225)
Q Consensus 133 ~~~~g~---------~~~a~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~~~~p~~~~~~~li~~~ 186 (225)
|++.+. +++|.++|++|.+.|+.||..||++|| +|.+.|+.||..|||+||.+|
T Consensus 71 c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~ 150 (501)
T 4g26_A 71 CSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGF 150 (501)
T ss_dssp HTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHH
Confidence 998765 688999999999999999999999999 677889999999999999999
Q ss_pred HccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 187 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
++.|++++|.++|++|.+.|+.||..||++||++|++.|
T Consensus 151 ~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g 189 (501)
T 4g26_A 151 CRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTK 189 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999987
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-25 Score=189.84 Aligned_cols=125 Identities=14% Similarity=0.172 Sum_probs=106.7
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 68 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
..--..|||+||++||+.|++++|.++|++| .+|...|+.||+.|||+||++||+.|++++|.++|+
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM-------------~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~ 189 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH-------------HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-------------HHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHH-------------HHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3444568999999997777666555555543 223346899999999999999999999999999999
Q ss_pred HHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCc-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 148 EAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK-IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 148 ~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
+|++.|+. ||+.|||+||.++|+.|+ .++|.++|++|.+.|+.||..||++++.++.|
T Consensus 190 eM~~~G~~------------------PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 190 MVKDAGLT------------------PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHTTCC------------------CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHcCCC------------------CcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 99999998 999999999999999998 57899999999999999999999987776655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=169.33 Aligned_cols=138 Identities=14% Similarity=0.207 Sum_probs=113.4
Q ss_pred chhhhHHHHHH-HHhCCHHHHHHHHHHHH---hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045820 37 RSLQAQRFVDK-IKASPLKERIDIFNSIK---KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112 (225)
Q Consensus 37 ~~~~~~~l~~~-~~~~~~~~a~~~~~~m~---~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~ 112 (225)
...+|+.+++. |+.|++++|..+|+.|. +.|+.||.+|||+||++||+ .|++++|.++|+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck----------------~G~~~eA~~Lf~ 189 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR----------------QGAFKELVYVLF 189 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH----------------HTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh----------------CCCHHHHHHHHH
Confidence 34468888885 59999999999998876 45899999999999999955 556677788888
Q ss_pred HHhhCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCccHHHHHHHH------------HHhhcCCCCC----
Q 045820 113 NVKNDGLKPDVYTYTAIMDGFCKVGRS-NEAMELLNEAIERGVTQNVVTLIQLL------------QRLEMGHIPR---- 175 (225)
Q Consensus 113 ~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~t~~~l~------------~~~~~~~~p~---- 175 (225)
+|++.|+.||+.|||++|+++|+.|+. ++|.++|++|.+.|+.||..||++++ +....++.|+
T Consensus 190 eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~ 269 (1134)
T 3spa_A 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269 (1134)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCC
T ss_pred HHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCc
Confidence 899999999999999999999999984 78999999999999999999999666 2234455554
Q ss_pred --HHHHHHHHHHHHccC
Q 045820 176 --TITFNNVIQALCGVG 190 (225)
Q Consensus 176 --~~~~~~li~~~~~~g 190 (225)
+.+...|.+-|.+.+
T Consensus 270 ~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 270 PPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCCCCTTTHHHHCCCS
T ss_pred ccccchHHHHHHHccCC
Confidence 556666667777655
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-17 Score=137.92 Aligned_cols=173 Identities=13% Similarity=0.038 Sum_probs=88.6
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
+.|++++|..+|+++.+. .+.+..+|+.+..+|.+.|++++|.++|+++ .+.|++++|.++
T Consensus 351 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444444444322 1224445555555555555555555555544 445555555555
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-----------------HHhhc---
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEM--- 170 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~--- 170 (225)
|+++.+.+ +.+..+|+.+..+|.+.|++++|..+|+++.+... .+..+|+.+. ++.+.
T Consensus 430 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 430 YTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 55555432 22455555555555555556556555555554321 2344444444 11111
Q ss_pred -CCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 171 -GHIPR--TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 171 -~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
+..|+ ..+|..+..+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKK 564 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTT
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 34455 4566666666666666666666666665543 235566666666655544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.2e-17 Score=136.12 Aligned_cols=208 Identities=11% Similarity=0.045 Sum_probs=173.8
Q ss_pred hHhhhcCCCCCChhhcchhhcCcchh-----hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 045820 14 VLLVDSPSRSPSAAESLDLKENPRSL-----QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 87 (225)
..++..|.+.|++++|.+++.++... .+..+.. .++.|++++|..+|+++.+.+ +.+..+|+.++.+|.+.|+
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTC
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCC
Confidence 34578899999999999999987552 2233333 348999999999999998775 3488899999999999999
Q ss_pred HHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 88 QDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 88 ~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
+++|..+|+.+ .+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|++|
T Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999887 77899999999999998642 236889999999999999999999999999
Q ss_pred HHcCCCccHHHHHHHH-----------------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc----CCC
Q 045820 150 IERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH----GKI 208 (225)
Q Consensus 150 ~~~g~~p~~~t~~~l~-----------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~ 208 (225)
.+.+ ..+..+|+.+. ++.+. ...+..+|+.+...|.+.|++++|.++|+++.+. +..
T Consensus 434 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 434 ARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 9764 34667777766 22222 2347889999999999999999999999999876 778
Q ss_pred CC--HHHHHHHHHHhhcCC
Q 045820 209 PS--RTSHDMLIKKLDQQP 225 (225)
Q Consensus 209 p~--~~~~~~ll~~~~~~g 225 (225)
|+ ..+|..+..+|.+.|
T Consensus 512 p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHhc
Confidence 88 789999999998876
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-12 Score=100.68 Aligned_cols=171 Identities=16% Similarity=0.074 Sum_probs=99.3
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
..|++++|...|+++.+.. +-+..+|..+...+.+.|++++|...|+++ ...|++++|...
T Consensus 147 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4577777777777766552 224566777777777777777777777665 344555666666
Q ss_pred HHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-----------------HHhhcCC
Q 045820 111 LMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGH 172 (225)
Q Consensus 111 ~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~~~ 172 (225)
|.+.... .| +..+++.+...|.+.|++++|...|+++.+..-. +..+|..+. ++.+. .
T Consensus 226 ~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~ 301 (388)
T 1w3b_A 226 YLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-C 301 (388)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-C
T ss_pred HHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C
Confidence 5555442 23 3556666666666667777777666666654311 233333332 11111 2
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 173 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
..+..+|+.+...+.+.|++++|...++++.+.. +.+..++..+...|.+.|
T Consensus 302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 2455666666666666666666666666665431 233556666666665544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.8e-11 Score=95.15 Aligned_cols=194 Identities=12% Similarity=-0.032 Sum_probs=148.3
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+...+.+.|++++|+..+.+..... +..+.. ....|++++|+..|++..+.. +.+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 446677788899999999999998743321 222222 338899999999999988763 346888999999999
Q ss_pred hcCCHHHHHHHHHHH----------------------------HhcCCHHHHHHHHHHHhhCCCC-CCHHhHHHHHHHHH
Q 045820 84 MLNEQDTAVKFFSNH----------------------------LMVGRVEEAYEMLMNVKNDGLK-PDVYTYTAIMDGFC 134 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~----------------------------~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~ 134 (225)
+.|++++|...|++. ...|++++|...|+++.+.... ++..+|..+...|.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 999999999999876 2368899999999999875322 26788999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHH
Q 045820 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214 (225)
Q Consensus 135 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 214 (225)
+.|++++|...|++..+..- .+..+|..+...|...|++++|...|++..+.. +.+..++
T Consensus 225 ~~g~~~~A~~~~~~al~~~p-------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 284 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRP-------------------EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSR 284 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHH
Confidence 99999999999999987642 356677777788888888888888888777642 2236666
Q ss_pred HHHHHHhhcCC
Q 045820 215 DMLIKKLDQQP 225 (225)
Q Consensus 215 ~~ll~~~~~~g 225 (225)
..+-.+|.+.|
T Consensus 285 ~~l~~~~~~~g 295 (365)
T 4eqf_A 285 YNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHCC
Confidence 66666665543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=8.5e-11 Score=93.98 Aligned_cols=209 Identities=13% Similarity=-0.008 Sum_probs=155.8
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+-..+...|++++|.+.+.++... .+..+.. ..+.|++++|...|+++.+.. +-+...|..+-..+.
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 34446777788889999999988774332 2223333 337899999999999988764 335677888888899
Q ss_pred hcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 045820 84 MLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 145 (225)
..|++++|...|++. ...|++++|.+.|+++.+.+ +.+..+|+.+...+.+.|++++|...
T Consensus 215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998888765 56799999999999988743 22566888999999999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHh-------------hc--CC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC
Q 045820 146 LNEAIERGVTQNVVTLIQLLQRL-------------EM--GH-IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 146 ~~~m~~~g~~p~~~t~~~l~~~~-------------~~--~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
|+++.+.. +.+..++..+.... +. .. ..+..+|..+...|.+.|++++|.+.|+++.+. .|
T Consensus 294 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p 370 (388)
T 1w3b_A 294 YNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SP 370 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CT
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC
Confidence 99988763 44666666655111 11 12 235778999999999999999999999999874 44
Q ss_pred -CHHHHHHHHHHhhcC
Q 045820 210 -SRTSHDMLIKKLDQQ 224 (225)
Q Consensus 210 -~~~~~~~ll~~~~~~ 224 (225)
+...|..+-..+.+.
T Consensus 371 ~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 371 TFADAYSNMGNTLKEM 386 (388)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHhHHHHHHHc
Confidence 456666666665544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.37 E-value=9.1e-11 Score=95.36 Aligned_cols=136 Identities=12% Similarity=0.084 Sum_probs=62.1
Q ss_pred hHhhhcCCCCCChhhcchhhcCc-----c-hhhhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHH--
Q 045820 14 VLLVDSPSRSPSAAESLDLKENP-----R-SLQAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSV---SDFNDLLMA-- 81 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~-----~-~~~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~-- 81 (225)
..+..++.+.|++++|+..+.+. . ...+..+.. ..+.|++++|...|+++.+.. +.+. ..|..+...
T Consensus 64 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 142 (450)
T 2y4t_A 64 YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDE 142 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHH
Confidence 34445555555555555555441 1 111111222 224555555555555554432 1122 333333222
Q ss_pred ----------HHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 045820 82 ----------LVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133 (225)
Q Consensus 82 ----------~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 133 (225)
+.+.|+++.|...|+.+ ...|++++|.+.|+++.+.. +.+..+|+.+...|
T Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 143 MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 55555555555555444 33455555555555544321 12344555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 045820 134 CKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 134 ~~~g~~~~a~~~~~~m~~ 151 (225)
.+.|++++|...|+++.+
T Consensus 222 ~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.35 E-value=6.1e-11 Score=96.37 Aligned_cols=210 Identities=13% Similarity=0.009 Sum_probs=150.2
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+...+.+.|++++|+..+.++... .+..+.. ....|++++|+..|+++.+.+ +.+..+|..+..+|.
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 34457778899999999999999874332 1222222 348899999999999998874 346788999999999
Q ss_pred hcCCHHHHHHHHHHH---------------------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 045820 84 MLNEQDTAVKFFSNH---------------------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~---------------------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 130 (225)
+.|++++|...|+.+ ...|++++|...|+++.+.. +.+..++..+.
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 184 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRA 184 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 999999999988765 34689999999999998643 34778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh-------------h--cCCCCC-HHHHHHH------------
Q 045820 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-------------E--MGHIPR-TITFNNV------------ 182 (225)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~-------------~--~~~~p~-~~~~~~l------------ 182 (225)
.+|.+.|++++|..+|+++.+.. +.+..++..+...+ + ....|+ ...+..+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 263 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998753 23455555554111 0 011232 3333333
Q ss_pred HHHHHccCcHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHhhcCC
Q 045820 183 IQALCGVGKIHKALLLLFLMYEHGKIPS-----RTSHDMLIKKLDQQP 225 (225)
Q Consensus 183 i~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g 225 (225)
...|.+.|++++|..+|+++.+. .|+ ...|..+...+.+.|
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g 309 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDE 309 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCC
Confidence 66777777777777777777653 343 335666666665544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.4e-11 Score=91.68 Aligned_cols=190 Identities=13% Similarity=0.075 Sum_probs=126.3
Q ss_pred hHhhhcCCCCCChhhcchhhcCcchhhhHH---HHHHH-HhCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCH
Q 045820 14 VLLVDSPSRSPSAAESLDLKENPRSLQAQR---FVDKI-KASPLKERIDIFNSIKKDGTNWS-VSDFNDLLMALVMLNEQ 88 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---l~~~~-~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~ 88 (225)
..+..+|...|++++|+..++......... +...+ ..++.++|+..++++...+..|+ ...+..+-.++.+.|++
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH
Confidence 466788888899998887776643322222 22222 56788999999998887766564 44455555788888888
Q ss_pred HHHHHHHHHH-------------HhcCCHHHHHHHHHHHhhCCCCCCHHhH---HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 89 DTAVKFFSNH-------------LMVGRVEEAYEMLMNVKNDGLKPDVYTY---TAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 89 ~~a~~~~~~~-------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
++|.+.++.- .+.|++++|.+.|+++.+. .|+.... .+.+..+...|++++|..+|+++.+.
T Consensus 118 ~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 118 DAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 8888776431 5678888888888888764 3443211 22334444557888888888888876
Q ss_pred CCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 153 g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
. + .+...|+.+..++.+.|++++|...+++..+.. +-+..++..+...+...|
T Consensus 196 ~-p------------------~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 196 C-S------------------PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLG 248 (291)
T ss_dssp S-C------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred C-C------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 2 2 466777777777888888888888888776542 224556666665554443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4.4e-10 Score=88.80 Aligned_cols=193 Identities=11% Similarity=-0.043 Sum_probs=139.2
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+...+.+.|++++|+..+.+.... .+..+.. ..+.|++++|...|++..+.. +.+..+|..+...+.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44556777888999999999888774322 1222222 338899999999999888764 447788999999999
Q ss_pred hcCCHHHHHHHHHHH---------------------------------HhcCCHHHHHHHHHHHhhCCCC-CCHHhHHHH
Q 045820 84 MLNEQDTAVKFFSNH---------------------------------LMVGRVEEAYEMLMNVKNDGLK-PDVYTYTAI 129 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~---------------------------------~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l 129 (225)
..|+++.|...|+.. ...|++++|...|+++.+.... ++..++..+
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 999999999988876 1347788999999998764322 147889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC
Q 045820 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 130 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
...|.+.|++++|...+++..+..- .+...|..+...|...|++++|...+++..+.. +.
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~-------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 283 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRP-------------------NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 283 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 9999999999999999999887632 245566666666777777777777777666532 22
Q ss_pred CHHHHHHHHHHhhcC
Q 045820 210 SRTSHDMLIKKLDQQ 224 (225)
Q Consensus 210 ~~~~~~~ll~~~~~~ 224 (225)
+...+..+...|.+.
T Consensus 284 ~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 284 YIRSRYNLGISCINL 298 (368)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC
Confidence 445555555555443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=99.33 Aligned_cols=197 Identities=11% Similarity=0.067 Sum_probs=81.5
Q ss_pred CCchhhHhhhcCCCCCChhhcchhhcCcc-hhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 045820 9 PTPFSVLLVDSPSRSPSAAESLDLKENPR-SLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86 (225)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 86 (225)
.+..+..+..++.+.|++++|++.|.+.. ..++..+...+ ..|++++|...++..++. .+++.+.+.++.+|.+.|
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhC
Confidence 34577788899999999999998887743 23344444444 678888888877666654 445777888888888888
Q ss_pred CHHHHHHHHHHH------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 87 EQDTAVKFFSNH------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 87 ~~~~a~~~~~~~------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
+++++.++++.- ...|.+++|...|..+ ..|+.+..++.+.|++++|.+.+.++
T Consensus 109 ~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA----- 174 (449)
T 1b89_A 109 RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----- 174 (449)
T ss_dssp CHHHHTTTTTCC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-----
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-----
Confidence 888877765321 5667788888887766 37788888888888888888888777
Q ss_pred CccHHHHHHHHHHh------------hcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 045820 155 TQNVVTLIQLLQRL------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 155 ~p~~~t~~~l~~~~------------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 222 (225)
.+..||..++..+ ...+..+......++..|.+.|++++|..+++.....- +-...+|+-|-.+|+
T Consensus 175 -~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 175 -NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred -CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 2556666655221 11122334445578899999999999999999887543 556777877777766
Q ss_pred c
Q 045820 223 Q 223 (225)
Q Consensus 223 ~ 223 (225)
+
T Consensus 253 k 253 (449)
T 1b89_A 253 K 253 (449)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.28 E-value=5.6e-10 Score=86.55 Aligned_cols=192 Identities=10% Similarity=-0.073 Sum_probs=139.4
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+...+.+.|++++|+..+.+..... +..+.. ....|++++|...|++..+.. +.+..+|..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 344566678889999999999988743221 222222 338899999999999988763 447788999999999
Q ss_pred hcCCHHHHHHHHHHH---------------------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 045820 84 MLNEQDTAVKFFSNH---------------------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~---------------------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 130 (225)
..|+++.|...++.. ...|++++|.+.+++..+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 999999999998776 12356799999999987653 23678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
..|.+.|++++|...+++..+... .+..+|..+...|...|++++|...+++..+.. +.+
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 239 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRP-------------------DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGY 239 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC
Confidence 999999999999999999987642 234556666666666666666666666665532 223
Q ss_pred HHHHHHHHHHhhcC
Q 045820 211 RTSHDMLIKKLDQQ 224 (225)
Q Consensus 211 ~~~~~~ll~~~~~~ 224 (225)
..++..+...|.+.
T Consensus 240 ~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 240 VRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555555444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-10 Score=87.88 Aligned_cols=169 Identities=12% Similarity=0.088 Sum_probs=136.7
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcc-------hhhhHHHHH--HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPR-------SLQAQRFVD--KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA 81 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~l~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 81 (225)
.....+...+...++.++|++.++++- ...+...+. ....|++++|+..+++ +.+...+..+...
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~ 139 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHH
Confidence 344477788899999999998887642 222222222 3488999999999987 4678889999999
Q ss_pred HHhcCCHHHHHHHHHHH--------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 045820 82 LVMLNEQDTAVKFFSNH--------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE 141 (225)
Q Consensus 82 ~~~~~~~~~a~~~~~~~--------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 141 (225)
+.+.|++++|.+.|+.+ ...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~e 218 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEA 218 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999887 2238999999999999876 34588899999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHH-HHHHHHHHHhc
Q 045820 142 AMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK-ALLLLFLMYEH 205 (225)
Q Consensus 142 a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 205 (225)
|+..|++..+..- -+..++..++..+...|+.++ +.++++++.+.
T Consensus 219 A~~~l~~al~~~p-------------------~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 219 AEGVLQEALDKDS-------------------GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999887642 367788899999999999875 67899888764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.26 E-value=5e-09 Score=76.67 Aligned_cols=183 Identities=10% Similarity=-0.050 Sum_probs=103.1
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
.+..+...+.+.|++++|++.+.+..... +..+.. ....|++++|...|++..+.. +.+..+|..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 34456667777788888877776532211 111222 236778888888887776653 3356667777777777
Q ss_pred c-CCHHHHHHHHHHH--------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 045820 85 L-NEQDTAVKFFSNH--------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143 (225)
Q Consensus 85 ~-~~~~~a~~~~~~~--------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 143 (225)
. |++++|...++.. ...|++++|...|.+..+.. +.+...+..+...|.+.|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence 7 7766666666554 33455555555555544321 113444555555555555555555
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHH
Q 045820 144 ELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216 (225)
Q Consensus 144 ~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 216 (225)
..+++..+..-. .+...+..+...+...|+.++|..+++.+.+. .|+...+..
T Consensus 168 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~ 220 (225)
T 2vq2_A 168 YYFKKYQSRVEV------------------LQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHCS------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHhCCC------------------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 555554443210 24455666666666777777777777776543 244444333
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-09 Score=85.03 Aligned_cols=194 Identities=9% Similarity=-0.029 Sum_probs=137.5
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
.....+...+...|++++|++.+.+..... +..+.. ....|++++|..+++++.+.. +-+...|..+-..+.
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 344455666777788888888777643221 111222 347788888888888877653 336677888888888
Q ss_pred hcC-CHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 045820 84 MLN-EQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144 (225)
Q Consensus 84 ~~~-~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 144 (225)
..| +++.|...|+.. ...|++++|...|++..+.. +.+...+..+...|.+.|++++|..
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAER 180 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHH
Confidence 888 788888887776 55678888888888776542 2234556667777888888888888
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC--------CCCCHHHHHH
Q 045820 145 LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG--------KIPSRTSHDM 216 (225)
Q Consensus 145 ~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~ 216 (225)
.+++..+..- .+...+..+...|...|++++|...+++..+.. ...+..++..
T Consensus 181 ~~~~al~~~~-------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
T 3hym_B 181 FFSQALSIAP-------------------EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241 (330)
T ss_dssp HHHHHHTTCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHH
T ss_pred HHHHHHHhCC-------------------CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence 8887776532 457889999999999999999999999998631 1334567778
Q ss_pred HHHHhhcCC
Q 045820 217 LIKKLDQQP 225 (225)
Q Consensus 217 ll~~~~~~g 225 (225)
+...|.+.|
T Consensus 242 la~~~~~~g 250 (330)
T 3hym_B 242 LGHVCRKLK 250 (330)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 877776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-09 Score=81.40 Aligned_cols=173 Identities=11% Similarity=0.025 Sum_probs=126.8
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
.+..+...+...|++++|+..+.+.... .+..+.. ....|++++|...|++..+.. +.+...|..+...+..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 3445667789999999999988874321 1112222 338899999999999988763 3477889999999999
Q ss_pred cCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 85 LNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 85 ~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
.|+++.|...|++. ...|++++|...+++..+.. +.+...+..+...|.+.|++++|...+
T Consensus 104 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999877 67799999999999987642 236778888999999999999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 147 ~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
++..+..- .+..+|..+...|...|++++|.+.+++..+.
T Consensus 183 ~~~~~~~~-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 183 AAVTEQDP-------------------GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHCT-------------------TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhCc-------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99887642 45778999999999999999999999999874
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-09 Score=79.82 Aligned_cols=178 Identities=8% Similarity=-0.075 Sum_probs=90.0
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 87 (225)
.+...+...|++++|++.+.+..... +..+.. ....|++++|...|++..+.. +.+...|..+...+...|+
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 120 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKR 120 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhH
Confidence 33444555555555555555422111 111111 225566666666665555442 2244455555555555555
Q ss_pred HHHHHHHHHHH--------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 88 QDTAVKFFSNH--------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 88 ~~~a~~~~~~~--------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
+++|...|++. ...|++++|...|.+..+.. +.+...+..+...|.+.|++++|...++
T Consensus 121 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555443 23344444444444443321 1133444444444444445555544444
Q ss_pred HHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHH
Q 045820 148 EAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215 (225)
Q Consensus 148 ~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 215 (225)
+..+.. ..+...+..+...+...|+.++|.++++++.+. .|+...+.
T Consensus 200 ~~~~~~-------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~ 246 (252)
T 2ho1_A 200 LFAQGG-------------------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQ 246 (252)
T ss_dssp HHHTTS-------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHH
T ss_pred HHHHhC-------------------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 444322 145566777777788888888888888888764 34444333
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.3e-10 Score=83.10 Aligned_cols=172 Identities=15% Similarity=0.067 Sum_probs=123.5
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh-----h-hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL-----Q-AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+-..+.+.|++++|+..+++.... . +..+-. ..+.|++++|+..|++..+.. +-+...|..+-..+.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 44556677888999999999888763221 1 112222 348899999999999988764 336678888999999
Q ss_pred hc-----------CCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 045820 84 ML-----------NEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134 (225)
Q Consensus 84 ~~-----------~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 134 (225)
+. |++++|...|++. ...|++++|...|++..+.. .+...+..+-.+|.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 99 9999999988777 66799999999999988765 67788888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 135 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..|++++|...|++..+..- -+...+..+...+...|++++|...+++...
T Consensus 163 ~~g~~~~A~~~~~~al~~~P-------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQAP-------------------KDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHTCHHHHHHHHHHHHHHST-------------------TCHHHHHHHHHHHTC----------------
T ss_pred HcCCHHHHHHHHHHHHHhCC-------------------CChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999887542 3567888999999999999999999987653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.5e-09 Score=78.22 Aligned_cols=158 Identities=13% Similarity=0.049 Sum_probs=131.5
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAY 108 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~ 108 (225)
....|++++|...|++..+.. +.+...|..+...+...|++++|.+.|++. ...|++++|.
T Consensus 47 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 125 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAY 125 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHH
Confidence 348899999999999988763 446788999999999999999999999877 6789999999
Q ss_pred HHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 045820 109 EMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALC 187 (225)
Q Consensus 109 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~ 187 (225)
+.|++..+.+..| +...+..+...|.+.|++++|...+++..+..- .+...+..+...|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-------------------~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 126 QRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-------------------NQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-------------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-------------------ccHHHHHHHHHHHH
Confidence 9999998744455 566788899999999999999999999887642 35778899999999
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 188 GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 188 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
..|++++|..++++..+.. +.+...+..+...|.+.|
T Consensus 187 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 223 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFE 223 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcc
Confidence 9999999999999988743 346667777777766554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-09 Score=83.55 Aligned_cols=207 Identities=11% Similarity=-0.020 Sum_probs=151.0
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKAS-PLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 82 (225)
.....+...+.+.|++++|...+.+..... +..+.. ....| ++++|...|++..+.. +.+...|..+...+
T Consensus 57 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 135 (330)
T 3hym_B 57 SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSF 135 (330)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344456677888999999998887743321 222222 33778 9999999999988764 33677899999999
Q ss_pred HhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 045820 83 VMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144 (225)
Q Consensus 83 ~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 144 (225)
...|++++|...|+.. ...|++++|.+.|++..+.. +.+...+..+...|.+.|++++|..
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 136 AVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHH
Confidence 9999999999999877 66899999999999998753 3467889999999999999999999
Q ss_pred HHHHHHHcCC--------CccHHHHHHHH-----------------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 045820 145 LLNEAIERGV--------TQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199 (225)
Q Consensus 145 ~~~~m~~~g~--------~p~~~t~~~l~-----------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 199 (225)
.+++..+..- ..+..++..+- +..+. ...+...|..+...|.+.|++++|...+
T Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-IPQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-CccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999886421 22223333333 11111 1235677888888888888888888888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHh
Q 045820 200 FLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 200 ~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
++..+.. +-+...+..+..++
T Consensus 294 ~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 294 HTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHccC-CCchHHHHHHHHHH
Confidence 8877532 22556666666655
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=9e-10 Score=85.37 Aligned_cols=194 Identities=10% Similarity=-0.024 Sum_probs=145.7
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHH-----
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDL----- 78 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l----- 78 (225)
..+..+...+.+.|++++|.+.+.+..... +..+.. ....|++++|...++...+.. +.+...+..+
T Consensus 56 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 134 (327)
T 3cv0_A 56 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADV 134 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHH
Confidence 445577788899999999999888743321 222222 338899999999999988763 2233333333
Q ss_pred ---------HH-HHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 045820 79 ---------LM-ALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130 (225)
Q Consensus 79 ---------i~-~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 130 (225)
-. .+...|++++|...+++. ...|++++|.+.+++..+.. +.+..+|..+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 213 (327)
T 3cv0_A 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLG 213 (327)
T ss_dssp -----------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 22 367778899999988776 67899999999999987643 33678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC-
Q 045820 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP- 209 (225)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p- 209 (225)
..|.+.|++++|...+++..+..- .+...|..+...|...|++++|.+.+++..+..-..
T Consensus 214 ~~~~~~~~~~~A~~~~~~a~~~~~-------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 274 (327)
T 3cv0_A 214 ATLANGNRPQEALDAYNRALDINP-------------------GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGT 274 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC-------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccc
Confidence 999999999999999999887642 357788999999999999999999999998643221
Q ss_pred ----------CHHHHHHHHHHhhcCC
Q 045820 210 ----------SRTSHDMLIKKLDQQP 225 (225)
Q Consensus 210 ----------~~~~~~~ll~~~~~~g 225 (225)
+..+|..+..+|.+.|
T Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 275 TPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp C-----CCTHHHHHHHHHHHHHHHTT
T ss_pred cccccchhhcCHHHHHHHHHHHHhcC
Confidence 4678888888877665
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.18 E-value=9.9e-10 Score=86.79 Aligned_cols=194 Identities=11% Similarity=0.033 Sum_probs=146.4
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHH------
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFND------ 77 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~------ 77 (225)
..+..+...+.+.|++++|+..+.+..... +..+.. ....|++++|...|+++.+.... +...+..
T Consensus 99 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 177 (368)
T 1fch_A 99 EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAG 177 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-------
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhh
Confidence 455577888999999999999888743221 222222 33889999999999998876422 2222321
Q ss_pred ---------HHHHHHhcCCHHHHHHHHHHH--------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHH
Q 045820 78 ---------LLMALVMLNEQDTAVKFFSNH--------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128 (225)
Q Consensus 78 ---------li~~~~~~~~~~~a~~~~~~~--------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 128 (225)
.+..+...|++++|...|+++ ...|++++|...|++..+.. +.+..+|+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 256 (368)
T 1fch_A 178 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNK 256 (368)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 244445888999998888765 66799999999999987642 336788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCC
Q 045820 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 208 (225)
+...|.+.|++++|...|++..+..- .+...|..+...|.+.|++++|...+++..+..-.
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~~-------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQP-------------------GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999987642 45788999999999999999999999998864211
Q ss_pred ---C-------CHHHHHHHHHHhhcCC
Q 045820 209 ---P-------SRTSHDMLIKKLDQQP 225 (225)
Q Consensus 209 ---p-------~~~~~~~ll~~~~~~g 225 (225)
| ...+|..+..+|.+.|
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHT
T ss_pred CCCccccccchhhHHHHHHHHHHHHhC
Confidence 1 2678888888887654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.17 E-value=3e-09 Score=77.88 Aligned_cols=158 Identities=11% Similarity=-0.013 Sum_probs=130.2
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------Hhc-CCHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMV-GRVEEA 107 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~-g~~~~a 107 (225)
....|++++|...|+...+.. +.+...|..+...+...|++++|...|+.. ... |++++|
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A 96 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAES 96 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHH
Confidence 448999999999999988763 346788999999999999999999999877 667 999999
Q ss_pred HHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 045820 108 YEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQAL 186 (225)
Q Consensus 108 ~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~ 186 (225)
...|++..+.+..| +...+..+...+.+.|++++|...++++.+... .+...+..+...|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~~~la~~~ 157 (225)
T 2vq2_A 97 MAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-------------------QFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CCchHHHHHHHHH
Confidence 99999998743344 367789999999999999999999999987642 3577889999999
Q ss_pred HccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 187 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
.+.|++++|..++++..+..-..+...+..+...+.+.
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL 195 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999998753224566666665555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-08 Score=76.34 Aligned_cols=189 Identities=11% Similarity=0.053 Sum_probs=127.4
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhh-----hHHHHH-HHHhCCHHHHHHHHHHHHhcC--CCCC----hhhHHHHH
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQ-----AQRFVD-KIKASPLKERIDIFNSIKKDG--TNWS----VSDFNDLL 79 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~l~~-~~~~~~~~~a~~~~~~m~~~g--~~~~----~~~~~~li 79 (225)
.+..+-..+...|++++|+..+.+..... +..+.. ....|++++|...|+...+.. ..++ ..+|..+.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 34456677888999999998887743322 112222 338899999999999886642 1122 57899999
Q ss_pred HHHHhcCCHHHHHHHHHHH----------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 80 MALVMLNEQDTAVKFFSNH----------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~----------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
..+.+.|++++|...|+.. ...|++++|...+++.... .| +...|..+...+.+.|++++|...+++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999887 3457788888888887764 34 456677888888888888888888888
Q ss_pred HHHcCCCccHHHHHHHH-----------------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 149 m~~~g~~p~~~t~~~l~-----------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..+..-. +..++..+- +..+. ...+...|..+...|.+.|++++|...+++..+
T Consensus 165 a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 165 MIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8765421 222222222 01111 112355666666666666666666666666654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.7e-10 Score=88.86 Aligned_cols=191 Identities=11% Similarity=0.018 Sum_probs=139.6
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCC-----------h
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWS-----------V 72 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~-----------~ 72 (225)
..+..+...+.+.|++++|+..+.+.... .+..+.. ....|++++|...|++..+.. |+ .
T Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~ 177 (365)
T 4eqf_A 100 EAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSP 177 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccch
Confidence 45667888899999999999998874322 1222333 338899999999999987652 22 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHH--------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 045820 73 SDFNDLLMALVMLNEQDTAVKFFSNH--------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG 132 (225)
Q Consensus 73 ~~~~~li~~~~~~~~~~~a~~~~~~~--------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 132 (225)
..+..+...+.+.|++++|...|++. ...|++++|.+.|++..+.. +.+..+|+.+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGAT 256 (365)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 23344577888899999999988777 56799999999999987642 3367899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC---CCC
Q 045820 133 FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG---KIP 209 (225)
Q Consensus 133 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p 209 (225)
|.+.|++++|...|++..+..- .+..+|..+...|.+.|++++|...|++..+.. ..|
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~p-------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 317 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQP-------------------GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---
T ss_pred HHHcCCHHHHHHHHHHHHhcCC-------------------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC
Confidence 9999999999999999987642 357889999999999999999999999997632 111
Q ss_pred --------CHHHHHHHHHHhhc
Q 045820 210 --------SRTSHDMLIKKLDQ 223 (225)
Q Consensus 210 --------~~~~~~~ll~~~~~ 223 (225)
+...|..+-.++..
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~ 339 (365)
T 4eqf_A 318 QQVPHPAISGNIWAALRIALSL 339 (365)
T ss_dssp ---------CHHHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHHHHHH
Confidence 35677777766654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=6.1e-09 Score=77.31 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=123.9
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAY 108 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~ 108 (225)
....|++++|...|++..+.. +.+...+..+...+.+.|++++|...|+.. ...|++++|.
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp ---------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHH
Confidence 347899999999999998753 446888999999999999999999999877 6689999999
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 045820 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG 188 (225)
Q Consensus 109 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~ 188 (225)
+.|++..+.. +.+...+..+...+.+.|++++|...+++..+..- .+...+..+...|..
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 112 DMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-------------------NDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------------------ccHHHHHHHHHHHHH
Confidence 9999987643 34677888899999999999999999999887642 457788899999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 189 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
.|++++|...+++..+.. +.+..++..+...|.+.|
T Consensus 172 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 207 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKE 207 (243)
T ss_dssp HTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcc
Confidence 999999999999998753 345777888887777654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.3e-08 Score=72.22 Aligned_cols=155 Identities=12% Similarity=0.067 Sum_probs=128.1
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------Hhc-------
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMV------- 101 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~------- 101 (225)
..+.|++++|...|++..+.. +-+...|..+-..+.+.|++++|...|++. ...
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~ 93 (217)
T 2pl2_A 15 LYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDR 93 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhh
Confidence 448999999999999988763 447788999999999999999999999877 445
Q ss_pred ----CCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCH
Q 045820 102 ----GRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176 (225)
Q Consensus 102 ----g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~ 176 (225)
|++++|...|++..+. .| +...|..+-..|...|++++|...|++..+.. . +.
T Consensus 94 ~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~-------------------~~ 151 (217)
T 2pl2_A 94 ERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D-------------------TP 151 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-------------------CH
T ss_pred cccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c-------------------ch
Confidence 9999999999998764 45 56788889999999999999999999988765 3 55
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
..+..+-..|...|++++|...|++..+.. +-+...+..+-..+.+.|
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 778888999999999999999999998753 235667777777776654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-08 Score=83.12 Aligned_cols=206 Identities=10% Similarity=-0.152 Sum_probs=135.5
Q ss_pred HhhhcCCCCCChhhcchhhcCcchh-----hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSL-----QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 88 (225)
.+-..+.+.|++++|+..+.+.... .+..+.. .++.|++++|...|+...+.+ +-+..+|..+..++.+.|++
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhH
Confidence 4455677788888888888764322 2222223 237888999999888887764 33567788888888888998
Q ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Q 045820 89 DTAVKFFSNHL--------------------------------------------------------------------- 99 (225)
Q Consensus 89 ~~a~~~~~~~~--------------------------------------------------------------------- 99 (225)
++|...|+.+.
T Consensus 90 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 90 ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 88888776551
Q ss_pred -------------------------------hcCCHHHHHHHHHHHhh-----CCC--------CCCHHhHHHHHHHHHh
Q 045820 100 -------------------------------MVGRVEEAYEMLMNVKN-----DGL--------KPDVYTYTAIMDGFCK 135 (225)
Q Consensus 100 -------------------------------~~g~~~~a~~~~~~m~~-----~g~--------~p~~~~~~~ll~~~~~ 135 (225)
+.|++++|..+|+++.+ ... +.+..++..+...+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 26888999999988876 211 1235678888888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh----------------hcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 045820 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199 (225)
Q Consensus 136 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~----------------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 199 (225)
.|++++|...++++.+.... ..++..+.... -.....+...|..+...|...|++++|...+
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999988876533 44444443111 1111234556666667777777777777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 200 FLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 200 ~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
++..+.. +.+...+..+...|.+.
T Consensus 328 ~~~~~~~-~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 328 DKAKELD-PENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHTC-SSCSHHHHHHHHHTTTT
T ss_pred HHHHHhC-hhhHHHHHHHHHHHHHc
Confidence 7766542 12344555555555544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-08 Score=75.86 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=100.2
Q ss_pred CchhhHhhhcCCCCCChhhcchhhcCcchhh-------------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhH
Q 045820 10 TPFSVLLVDSPSRSPSAAESLDLKENPRSLQ-------------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDF 75 (225)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 75 (225)
...+..+...+...|++++|++.+.+..... +..+.. ....|++++|...|+...+.. |+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--- 112 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA--- 112 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH---
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh---
Confidence 4556677888999999999999988743321 111222 238899999999999988753 332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC
Q 045820 76 NDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137 (225)
Q Consensus 76 ~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 137 (225)
..+.+.|++++|...++.. ...|++++|...|++..+.. +.+..+|..+...|.+.|
T Consensus 113 ----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 187 (258)
T 3uq3_A 113 ----DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLM 187 (258)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhC
Confidence 3455556667777666555 56688888888888876543 235677888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 138 RSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 138 ~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
++++|...+++..+..- .+..++..+-
T Consensus 188 ~~~~A~~~~~~al~~~~-~~~~~~~~l~ 214 (258)
T 3uq3_A 188 SFPEAIADCNKAIEKDP-NFVRAYIRKA 214 (258)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCH-HHHHHHHHHH
Confidence 88888888888877542 2344444443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.08 E-value=7.3e-08 Score=68.66 Aligned_cols=142 Identities=13% Similarity=0.122 Sum_probs=109.2
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
+.|++++|+..|++..+.. +-+..+|..+-..|.+.|++++|...+... ...++++.|...
T Consensus 17 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 95 (184)
T 3vtx_A 17 TKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDA 95 (184)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6677777777777766553 225566777777777777777777776655 556788888888
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG 190 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g 190 (225)
+.+..... +-+...+..+-..|.+.|++++|...|++..+..- -+...|..+-.+|.+.|
T Consensus 96 ~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-------------------~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 96 LQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-------------------GFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-------------------hhhhHHHHHHHHHHHCC
Confidence 88876532 23677899999999999999999999999987642 46778999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHH
Q 045820 191 KIHKALLLLFLMYEHGKIPSRTS 213 (225)
Q Consensus 191 ~~~~a~~~~~~m~~~g~~p~~~~ 213 (225)
++++|.+.|++..+. .|+...
T Consensus 156 ~~~~A~~~~~~al~~--~p~~a~ 176 (184)
T 3vtx_A 156 LRDEAVKYFKKALEK--EEKKAK 176 (184)
T ss_dssp CHHHHHHHHHHHHHT--THHHHH
T ss_pred CHHHHHHHHHHHHhC--CccCHH
Confidence 999999999998873 455433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-08 Score=69.67 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=108.5
Q ss_pred hhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 13 SVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
+..+...+...|++++|++.+.+..... +..+.. ....|++++|...++...+.. +.+...|..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 3355566677777777777776643221 111222 236777888887777776552 33556666666666555
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 86 ~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
|++ ++|.+.|++..+.. +.+...+..+...+.+.|++++|...+++..+...
T Consensus 90 ~~~----------------~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----------- 141 (186)
T 3as5_A 90 QKY----------------DLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP----------- 141 (186)
T ss_dssp TCH----------------HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred cCH----------------HHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-----------
Confidence 555 55555555544432 34677888999999999999999999999887642
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 166 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
.+...+..+...|...|++++|...+++..+.
T Consensus 142 --------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 142 --------NEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp --------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45688899999999999999999999998753
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-10 Score=93.00 Aligned_cols=159 Identities=14% Similarity=0.110 Sum_probs=40.1
Q ss_pred CCCCChhhcchhhcCcchhh-hHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 21 SRSPSAAESLDLKENPRSLQ-AQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~-~~~l~~~-~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
.+.|++++|.+++++.+... |..+..+ ++.|++++|++.|.+ .+|..+|..++.++...|++++|...++..
T Consensus 14 ~~~~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 46677888888888865433 3334443 378889999988854 257778888899888888888887755433
Q ss_pred -----------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 045820 99 -----------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161 (225)
Q Consensus 99 -----------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 161 (225)
.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 88 rk~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------ 148 (449)
T 1b89_A 88 RKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------ 148 (449)
T ss_dssp ---------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------------
T ss_pred HHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------------
Confidence 44566666555543 356667777777777777777777777754
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 162 ~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
..|..+..++++.|++++|.+.++++ -++.+|..++.+|++.|
T Consensus 149 ---------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ 191 (449)
T 1b89_A 149 ---------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 191 (449)
T ss_dssp ---------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTT
T ss_pred ---------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcC
Confidence 24556666666666666666666655 25556666666665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.9e-08 Score=75.14 Aligned_cols=172 Identities=13% Similarity=-0.031 Sum_probs=129.5
Q ss_pred hhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 13 SVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
+..+...+.+.|++++|+..+.+..... +..+.. ....|++++|...|+...+.. +-+...|..+...+...
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHc
Confidence 3455566778889999988887643221 111222 337899999999998887663 33667788888889888
Q ss_pred CCHHHHHHHHHHH---------------------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 045820 86 NEQDTAVKFFSNH---------------------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG 132 (225)
Q Consensus 86 ~~~~~a~~~~~~~---------------------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 132 (225)
|++++|...|+.. ...|++++|.+.|++..+.. +.+...+..+...
T Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAEC 163 (359)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 9988888887665 24577788888888876642 2366778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 133 FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 133 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
|.+.|++++|...+++..+... .+...|..+...|...|++++|...+++..+.
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLKS-------------------DNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCS-------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888888888888888876532 46788999999999999999999999999874
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.4e-07 Score=70.29 Aligned_cols=167 Identities=11% Similarity=-0.005 Sum_probs=115.2
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhhhH----HHHH-HHH----hCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQAQ----RFVD-KIK----ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~l~~-~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 82 (225)
.+..+-..+.+.|++++|++.+.+....+.. .+-. ... .+++++|+..|++..+.+ +...+..+-..|
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 3445556677788888888888764332211 1222 226 788999999998887775 677788888888
Q ss_pred Hh----cCCHHHHHHHHHHH----------------Hh----cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh---
Q 045820 83 VM----LNEQDTAVKFFSNH----------------LM----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK--- 135 (225)
Q Consensus 83 ~~----~~~~~~a~~~~~~~----------------~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--- 135 (225)
.. .+++++|...|+.. .. .+++++|.+.|++..+.+ +...+..+-..|.+
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~ 161 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRG 161 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred hCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCC
Confidence 88 88888888888766 33 788888888888887755 55667777777777
Q ss_pred -cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHHHhc
Q 045820 136 -VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG----VGKIHKALLLLFLMYEH 205 (225)
Q Consensus 136 -~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~ 205 (225)
.+++++|...|++..+.+. ...+..+-..|.. .+++++|...+++..+.
T Consensus 162 ~~~~~~~A~~~~~~a~~~~~---------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 162 TPKDLKKALASYDKACDLKD---------------------SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTC---------------------HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCCC---------------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 8888888888888877642 2334444444444 55555555555555544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-08 Score=83.70 Aligned_cols=182 Identities=12% Similarity=0.037 Sum_probs=141.4
Q ss_pred CCCCCChhhcchhhcCcch-----h----------hh--HH---HHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 045820 20 PSRSPSAAESLDLKENPRS-----L----------QA--QR---FVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDL 78 (225)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~-----~----------~~--~~---l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 78 (225)
+.+.|++++|+..+.+... . .. .. +.. ....|++++|...|++..+.... ...|..+
T Consensus 199 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l 276 (514)
T 2gw1_A 199 KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYM 276 (514)
T ss_dssp SCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHH
T ss_pred hhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHH
Confidence 3468999999998877554 1 11 11 111 23889999999999999877433 8889999
Q ss_pred HHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHH
Q 045820 79 LMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN 140 (225)
Q Consensus 79 i~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 140 (225)
...+...|+++.|...++.. ...|++++|...|++..+.. +.+...+..+...|.+.|+++
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 355 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFD 355 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHH
Confidence 99999999999999998877 66789999999999987753 235678888899999999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC-CCCC----HHHHH
Q 045820 141 EAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG-KIPS----RTSHD 215 (225)
Q Consensus 141 ~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~~~~ 215 (225)
+|..+++++.+..- .+...|..+...|...|++++|...++++.+.. -.|+ ...+.
T Consensus 356 ~A~~~~~~~~~~~~-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (514)
T 2gw1_A 356 DCETLFSEAKRKFP-------------------EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416 (514)
T ss_dssp HHHHHHHHHHHHST-------------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred HHHHHHHHHHHHcc-------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 99999999887532 356788999999999999999999999997642 1222 33677
Q ss_pred HHHHHhhc
Q 045820 216 MLIKKLDQ 223 (225)
Q Consensus 216 ~ll~~~~~ 223 (225)
.+...|.+
T Consensus 417 ~l~~~~~~ 424 (514)
T 2gw1_A 417 GKATLLTR 424 (514)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 77777665
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-07 Score=72.30 Aligned_cols=156 Identities=12% Similarity=0.075 Sum_probs=125.9
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAY 108 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~ 108 (225)
.+..|++++|+..|+...+.. +.+..+|..+-..+...|+++.|...|+.. ...|++++|.
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 91 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAE 91 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHH
Confidence 458999999999999998763 346788999999999999999999999887 5679999999
Q ss_pred HHHHHHhhCCCCC----CHHhHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCC
Q 045820 109 EMLMNVKNDGLKP----DVYTYTAI------------MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172 (225)
Q Consensus 109 ~~~~~m~~~g~~p----~~~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~ 172 (225)
..|++..+. .| +...+..+ ...+...|++++|..+++++.+..-
T Consensus 92 ~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------------------ 151 (359)
T 3ieg_A 92 DDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV------------------ 151 (359)
T ss_dssp HHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------
T ss_pred HHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------------------
Confidence 999998764 34 33444444 4788899999999999999887642
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 173 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
.+...+..+...|...|++++|...+++..+.. +.+..++..+...|.+.|
T Consensus 152 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 152 -WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHT
T ss_pred -CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 467788999999999999999999999998753 446677777777765543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-07 Score=70.06 Aligned_cols=187 Identities=16% Similarity=0.005 Sum_probs=134.7
Q ss_pred hhhcCCCCCChhhcchhhcCcchh-------hhHH---HHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 16 LVDSPSRSPSAAESLDLKENPRSL-------QAQR---FVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~---l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
+...+...|++++|+..+.+.... .... +.. ....|++++|...|++..+.. +.+..+|..+...+..
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHH
Confidence 344677789999999888774432 1111 112 238899999999999988763 3368889999999999
Q ss_pred cCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 85 LNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 85 ~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
.|++++|...|+.. ...|++++|...|++..+. .|+...+...+..+.+.|++++|...+
T Consensus 90 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999877 6789999999999998874 455445555556667779999999999
Q ss_pred HHHHHcCCCccHHHHHHHH------------HHhhcCC--CC-----CHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 147 NEAIERGVTQNVVTLIQLL------------QRLEMGH--IP-----RTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 147 ~~m~~~g~~p~~~t~~~l~------------~~~~~~~--~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
.+..... .++...+.... ......+ .| +...|..+...|.+.|++++|...|++..+..
T Consensus 168 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 168 KQHFEKS-DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHS-CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhcC-CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 8777643 22323333222 1111111 12 15788899999999999999999999998753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.5e-08 Score=76.62 Aligned_cols=193 Identities=14% Similarity=0.033 Sum_probs=135.6
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchh--------h------hHHHHH-HHHhCCHHHHHHHHHHHHhc------C-CC
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSL--------Q------AQRFVD-KIKASPLKERIDIFNSIKKD------G-TN 69 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~------~~~l~~-~~~~~~~~~a~~~~~~m~~~------g-~~ 69 (225)
.+..+...+...|++++|+..+.+.... . +..+.. ....|++++|...+++..+. + ..
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3446778899999999999998875442 1 111112 23789999999999887654 2 23
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHH--------------------------HhcCCHHHHHHHHHHHhhC------
Q 045820 70 WSVSDFNDLLMALVMLNEQDTAVKFFSNH--------------------------LMVGRVEEAYEMLMNVKND------ 117 (225)
Q Consensus 70 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------------~~~g~~~~a~~~~~~m~~~------ 117 (225)
....+|..+...|...|++++|...|++. ...|++++|.+.|++..+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 34667888999999999999999888665 5679999999999998753
Q ss_pred CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCccHHH-HH--HHH----HHh-------------h
Q 045820 118 GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-------VTQNVVT-LI--QLL----QRL-------------E 169 (225)
Q Consensus 118 g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-------~~p~~~t-~~--~l~----~~~-------------~ 169 (225)
+..| ...++..+...|.+.|++++|...+++..+.. ..+.... +. ..+ ... .
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 2234 34578889999999999999999999987631 1111110 00 001 000 0
Q ss_pred c---CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 170 M---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 170 ~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
. ....+..+|..+...|.+.|++++|.+++++..+
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 1123456788999999999999999999998875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-07 Score=62.52 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=95.8
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|..+|+++.+.. +.+...|..+...+...|+++.|...|+ ++.+.+ +.+...+
T Consensus 11 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~----------------~~~~~~-~~~~~~~ 72 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQ----------------KALELD-PRSAEAW 72 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH----------------HHHHHC-TTCHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHH----------------HHHHHC-CCchHHH
Confidence 448899999999999988764 3366778888888866666655555554 443322 3356788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
..+...+.+.|++++|...++++.+... .+...+..+...+.+.|++++|.+.++++.+.
T Consensus 73 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 73 YNLGNAYYKQGDYDEAIEYYQKALELDP-------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------------CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8899999999999999999999987642 35678888999999999999999999998764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=9.6e-08 Score=73.27 Aligned_cols=141 Identities=14% Similarity=0.047 Sum_probs=108.7
Q ss_pred HHHhCCHHHHHHHHHHHHhc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH---------------------
Q 045820 47 KIKASPLKERIDIFNSIKKD-------GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--------------------- 98 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------- 98 (225)
....|++++|..+|++..+. .......++..+-..|...|++++|...+++.
T Consensus 37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 116 (311)
T 3nf1_A 37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNN 116 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 34889999999999988763 23445677888999999999999999888665
Q ss_pred -----HhcCCHHHHHHHHHHHhhC------CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCccHHH
Q 045820 99 -----LMVGRVEEAYEMLMNVKND------GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIER------GVTQNVVT 160 (225)
Q Consensus 99 -----~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t 160 (225)
...|++++|...|.+..+. +-.| ....+..+...|.+.|++++|..++++..+. +..|
T Consensus 117 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~---- 192 (311)
T 3nf1_A 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP---- 192 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH----
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH----
Confidence 5568888888888887653 2223 3456778888888888888888888887664 1111
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 161 ~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
....++..+...|...|++++|..++++..+
T Consensus 193 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 193 -------------NVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp -------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345788889999999999999999999875
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-07 Score=78.53 Aligned_cols=190 Identities=11% Similarity=-0.017 Sum_probs=138.6
Q ss_pred hhHhhhcCCCCCChhhcchhhcCcchhh-----hHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 045820 13 SVLLVDSPSRSPSAAESLDLKENPRSLQ-----AQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86 (225)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 86 (225)
+..+-..+...|++++|+..+.+..... +..+...+ ..|++++|...|+...+.. +.+..+|..+...+...|
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcC
Confidence 3345567788899999998887733221 22222222 7899999999999988764 346788999999999999
Q ss_pred CHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 87 EQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 87 ~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
+++.|...|++. ...|++++|...|++..+.. +.+...|..+...|.+.|++++|...|++
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999877 67899999999999988753 33567899999999999999999999999
Q ss_pred HHHcCCC-c----cH-------HHHHHH----------------H----HHhhcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 045820 149 AIERGVT-Q----NV-------VTLIQL----------------L----QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196 (225)
Q Consensus 149 m~~~g~~-p----~~-------~t~~~l----------------~----~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 196 (225)
..+..-. + .. ..|... + +..+. ...+...|..+...|.+.|++++|.
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccHHHHH
Confidence 8764311 1 10 111111 1 11111 2235677888888899999999999
Q ss_pred HHHHHHHhc
Q 045820 197 LLLFLMYEH 205 (225)
Q Consensus 197 ~~~~~m~~~ 205 (225)
+.|++..+.
T Consensus 483 ~~~~~al~~ 491 (537)
T 3fp2_A 483 ELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988874
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.82 E-value=6.9e-07 Score=69.26 Aligned_cols=160 Identities=10% Similarity=0.053 Sum_probs=125.5
Q ss_pred hhcchhhcCcch-h------hhHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHH
Q 045820 27 AESLDLKENPRS-L------QAQRFVDK-IKASPLKERIDIFNSIKKDGTNWS-VS-DFNDLLMALVMLNEQDTAVKFFS 96 (225)
Q Consensus 27 ~~a~~~~~~~~~-~------~~~~l~~~-~~~~~~~~a~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~ 96 (225)
++|...+++... . .+..+... .+.|++++|..+|++..+. .|+ .. .|..+...+.+.|+++.|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 788877766332 1 12222222 3789999999999999874 454 33 79999999999999999999998
Q ss_pred HHH-------------------hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCc
Q 045820 97 NHL-------------------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQ 156 (225)
Q Consensus 97 ~~~-------------------~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p 156 (225)
... ..|+.++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++..+.. ..|
T Consensus 159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 862 2599999999999987642 2367889999999999999999999999999863 331
Q ss_pred cHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 157 ~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
+ -....|..++..+.+.|+.++|..+++++.+.
T Consensus 238 ~----------------~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 238 E----------------KSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp G----------------GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred H----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0 13568899999999999999999999999864
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.3e-07 Score=69.96 Aligned_cols=191 Identities=9% Similarity=-0.033 Sum_probs=131.2
Q ss_pred hHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHh
Q 045820 14 VLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWS--VSDFNDLLMALVM 84 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~ 84 (225)
......+...|++++|+..+.+.... .+..+.. ....|++++|+..|++..+..-.++ ..+|..+-..+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34456677889999999888773221 1222323 3488999999999999887432222 2238889999999
Q ss_pred cCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHH
Q 045820 85 LNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMEL 145 (225)
Q Consensus 85 ~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 145 (225)
.|++++|...|+.. ...|++++|...|++..+. .| +...|..+-..+-..+++++|...
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877 6678999999998888764 34 555666666234444589999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCc---HHHHHHHHHHHHhc-CCCCC------HHHHH
Q 045820 146 LNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK---IHKALLLLFLMYEH-GKIPS------RTSHD 215 (225)
Q Consensus 146 ~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~-g~~p~------~~~~~ 215 (225)
|++..+..- .+...+..+...+...|+ .++|...+++..+. .-.|+ ...|.
T Consensus 165 ~~~a~~~~p-------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (272)
T 3u4t_A 165 FVKVLELKP-------------------NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225 (272)
T ss_dssp HHHHHHHST-------------------TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred HHHHHHhCc-------------------cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 988887542 235666777777777777 77788888887753 22233 14555
Q ss_pred HHHHHhhcCC
Q 045820 216 MLIKKLDQQP 225 (225)
Q Consensus 216 ~ll~~~~~~g 225 (225)
.+-..|.+.|
T Consensus 226 ~l~~~~~~~~ 235 (272)
T 3u4t_A 226 YIAYYYTINR 235 (272)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 5655555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.2e-07 Score=70.08 Aligned_cols=172 Identities=14% Similarity=-0.018 Sum_probs=119.9
Q ss_pred HhCCHHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGT---NWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEA 107 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a 107 (225)
..+++++|+..|+++.+... +.+..+|..+...+...|++++|...|++. ...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 35789999999999987632 125677899999999999999999999887 678999999
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-----------------HHhhc
Q 045820 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEM 170 (225)
Q Consensus 108 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~ 170 (225)
.+.|++..+.. +.+..+|..+...|.+.|++++|...|+++.+.. |+........ +...
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~- 172 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE- 172 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 99999998742 2367889999999999999999999999998754 2222111111 1111
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCC--C-CHHHHHHHHHHhhcCC
Q 045820 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI--P-SRTSHDMLIKKLDQQP 225 (225)
Q Consensus 171 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p-~~~~~~~ll~~~~~~g 225 (225)
...++...+. +...+...++.++|...+++..+.... | +...+..+-..|.+.|
T Consensus 173 ~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 229 (275)
T 1xnf_A 173 KSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG 229 (275)
T ss_dssp HSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcC
Confidence 1223333333 566666677777777777777643211 1 1456666666665544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.80 E-value=5.5e-07 Score=63.43 Aligned_cols=141 Identities=15% Similarity=0.106 Sum_probs=109.2
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|...|++..+.. +.+...+..+...+...|++++|...++. ..+.. +.+...+
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~----------------~~~~~-~~~~~~~ 79 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLER----------------SLADA-PDNVKVA 79 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------HHHHC-TTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHH----------------HHhcC-CCCHHHH
Confidence 348899999999999887653 34677788888888666666655555544 33321 3367788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
..+...+...|++++|...+++..+..- .+...+..+...+...|++++|.+++++..+..
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVAEANP-------------------INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCc-------------------HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 9999999999999999999999987642 466788889999999999999999999998754
Q ss_pred CCCCHHHHHHHHHHhhcCC
Q 045820 207 KIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 207 ~~p~~~~~~~ll~~~~~~g 225 (225)
+.+...+..+...|.+.|
T Consensus 141 -~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 141 -PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp -TTCHHHHHHHHHHHHHTT
T ss_pred -ccchHHHHHHHHHHHHcC
Confidence 345677888877776654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.79 E-value=7.4e-07 Score=73.75 Aligned_cols=154 Identities=14% Similarity=0.071 Sum_probs=113.8
Q ss_pred CchhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 045820 10 TPFSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82 (225)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 82 (225)
...+..+...+.+.|++++|++.+.+..... +..+.. ....|++++|...|+...+.. +-+...|..+...+
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 354 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLL 354 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455577888999999999999988743221 222222 338899999999999998764 33567899999999
Q ss_pred HhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCC-----CCCCHHhHHHHHHHHHhc---
Q 045820 83 VMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDG-----LKPDVYTYTAIMDGFCKV--- 136 (225)
Q Consensus 83 ~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~--- 136 (225)
...|++++|...|++. ...|++++|...|++..+.. .......+......+.+.
T Consensus 355 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999887 67899999999999986532 111222244445677777
Q ss_pred -------CCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 137 -------GRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 137 -------g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
|++++|...|++..+..- .+..++..+-
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~ 469 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLA 469 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 999999999999987642 2445555554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-07 Score=70.34 Aligned_cols=156 Identities=15% Similarity=0.075 Sum_probs=109.1
Q ss_pred HhCCHHHHHHHHHHHHhc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHH-----------------------
Q 045820 49 KASPLKERIDIFNSIKKD------GT-NWSVSDFNDLLMALVMLNEQDTAVKFFSNH----------------------- 98 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----------------------- 98 (225)
..|++++|...|++..+. +- +....+|..+-..|...|++++|...|++.
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 134 (283)
T 3edt_B 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA 134 (283)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 788889998888877544 22 234566888888888889988888877665
Q ss_pred ---HhcCCHHHHHHHHHHHhhC------CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCccHH-H
Q 045820 99 ---LMVGRVEEAYEMLMNVKND------GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-------VTQNVV-T 160 (225)
Q Consensus 99 ---~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-------~~p~~~-t 160 (225)
...|++++|...|++..+. +-.| ...++..+...|.+.|++++|...+++..+.. ..+... .
T Consensus 135 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 214 (283)
T 3edt_B 135 LLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 5568889999888887653 2233 45678899999999999999999999887641 111111 1
Q ss_pred HHHHH-------------------HHhhc---CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 161 LIQLL-------------------QRLEM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 161 ~~~l~-------------------~~~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
+..+- ...+. .......++..+...|...|++++|..++++..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 215 WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 00110 1112345788899999999999999999998875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.79 E-value=3.1e-06 Score=65.56 Aligned_cols=150 Identities=7% Similarity=-0.013 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------------HhcCCHHHHHHHHHHH
Q 045820 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------------LMVGRVEEAYEMLMNV 114 (225)
Q Consensus 54 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------~~~g~~~~a~~~~~~m 114 (225)
++|..+|++-.+.-.+-+...|..+...+.+.|+++.|..+|++. .+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 899999999887412335568999999998888888888777665 3346666666666666
Q ss_pred hhCCCCCCHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHH
Q 045820 115 KNDGLKPDVYTYTAIMDGF-CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIH 193 (225)
Q Consensus 115 ~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 193 (225)
.+.. +++...|....... ...|+.++|..+|++..+.. .-+...|..++..+.+.|+++
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-------------------p~~~~~~~~~~~~~~~~g~~~ 220 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-------------------GDIPEYVLAYIDYLSHLNEDN 220 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-------------------TTCHHHHHHHHHHHHTTCCHH
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CCcHHHHHHHHHHHHHCCCHH
Confidence 5432 12233333222221 12466666666666665432 135778999999999999999
Q ss_pred HHHHHHHHHHhcC-CCCC--HHHHHHHHHHhhc
Q 045820 194 KALLLLFLMYEHG-KIPS--RTSHDMLIKKLDQ 223 (225)
Q Consensus 194 ~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~ 223 (225)
+|..+|+...+.. +.|+ ...|..++..+.+
T Consensus 221 ~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 221 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999863 5663 5667666655544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=6.4e-07 Score=67.90 Aligned_cols=168 Identities=9% Similarity=-0.061 Sum_probs=134.1
Q ss_pred hhhHhhhcCCC----CCChhhcchhhcCcchhhhH----HHHHH-HH----hCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 045820 12 FSVLLVDSPSR----SPSAAESLDLKENPRSLQAQ----RFVDK-IK----ASPLKERIDIFNSIKKDGTNWSVSDFNDL 78 (225)
Q Consensus 12 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~----~l~~~-~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 78 (225)
.+..+-..|.. .+++++|+..+.+....+.. .+-.. .. .+++++|+..|++..+.+ +...+..+
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 116 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASL 116 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHH
Confidence 34445555556 89999999998875443322 12222 26 899999999999988875 77889999
Q ss_pred HHHHHh----cCCHHHHHHHHHHH----------------Hh----cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 045820 79 LMALVM----LNEQDTAVKFFSNH----------------LM----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134 (225)
Q Consensus 79 i~~~~~----~~~~~~a~~~~~~~----------------~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 134 (225)
-..|.+ .+++++|...|+.. .. .+++++|...|++..+.+ +...+..+-..|.
T Consensus 117 g~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 117 GGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYH 193 (273)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 999999 99999999999876 33 789999999999988764 5677888888999
Q ss_pred h----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHHHhcC
Q 045820 135 K----VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG----VGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 135 ~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 206 (225)
+ .+++++|...|++..+.+. ...+..+-..|.+ .++.++|.+.|++..+.|
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~~---------------------~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELEN---------------------GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTTC---------------------HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHhCCC---------------------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9 9999999999999888642 4567777778887 899999999999998876
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-07 Score=71.24 Aligned_cols=139 Identities=16% Similarity=0.081 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--------------------------HhcCCHHHHH
Q 045820 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--------------------------LMVGRVEEAY 108 (225)
Q Consensus 55 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------------~~~g~~~~a~ 108 (225)
+|+++++.......+....++..+-..|...|++++|...|++. ...|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 44444444443333445777899999999999999999888665 5578888888
Q ss_pred HHHHHHhhC------CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHH
Q 045820 109 EMLMNVKND------GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181 (225)
Q Consensus 109 ~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~ 181 (225)
..|.+..+. .-.| ...+|..+-..|...|++++|...+++..+.... ...........++..
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT-----------RLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-----------HSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------hcCCCCHHHHHHHHH
Confidence 888887653 1123 3566888888888888888888888887764000 000000123567888
Q ss_pred HHHHHHccCcHHHHHHHHHHHHh
Q 045820 182 VIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 182 li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
+...|...|++++|..++++..+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999998875
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.1e-06 Score=60.99 Aligned_cols=134 Identities=11% Similarity=0.042 Sum_probs=99.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG 132 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 132 (225)
+..+|..+=..|.+.|++++|...|++. ...|++++|...+....... +-+...+..+-..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 5677888999998889888888888776 55677777777777765532 2244556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHH
Q 045820 133 FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212 (225)
Q Consensus 133 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 212 (225)
+...++++.|...+.+..+... -+...+..+-..|.+.|++++|++.|++..+.. +-+..
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~-------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~ 142 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT-------------------VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIR 142 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-------------------cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhh
Confidence 7777777777777777665432 457788889999999999999999999998753 33567
Q ss_pred HHHHHHHHhhcCC
Q 045820 213 SHDMLIKKLDQQP 225 (225)
Q Consensus 213 ~~~~ll~~~~~~g 225 (225)
+|..+-.+|.+.|
T Consensus 143 ~~~~lg~~~~~~g 155 (184)
T 3vtx_A 143 AYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
Confidence 7888877777665
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-07 Score=74.12 Aligned_cols=152 Identities=11% Similarity=0.109 Sum_probs=80.6
Q ss_pred HhCC-HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHH
Q 045820 49 KASP-LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYE 109 (225)
Q Consensus 49 ~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~ 109 (225)
..|+ +++|+..|++..+..- -+...|+.+-.++.+.|++++|...|++. ...|++++|+.
T Consensus 143 ~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~ 221 (382)
T 2h6f_A 143 SLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQ 221 (382)
T ss_dssp HTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred HcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHH
Confidence 4443 5555555555544421 14444555555555555555555544444 23344444444
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHh-cCCHHHH-----HHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCK-VGRSNEA-----MELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVI 183 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a-----~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li 183 (225)
.|+++.+.. +-+...|+.+-.++.+ .|..++| +..+++..+..- -+...|+.+.
T Consensus 222 ~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-------------------~~~~a~~~l~ 281 (382)
T 2h6f_A 222 YVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-------------------HNESAWNYLK 281 (382)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-------------------TCHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-------------------CCHHHHHHHH
Confidence 444444321 1133444444444444 3332333 233444333221 2456788888
Q ss_pred HHHHccC--cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 184 QALCGVG--KIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 184 ~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
..+...| +.++|.+.+.++ ..-..+...+..+...|.+
T Consensus 282 ~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 282 GILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHH
T ss_pred HHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHH
Confidence 8888888 689999999888 3334466777888777765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=9.7e-07 Score=76.39 Aligned_cols=155 Identities=10% Similarity=0.020 Sum_probs=102.5
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~~-~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
.+..|-..|.+.|++++|++.+++.-.. .+..+-.. .+.|++++|+..|++..+.. +-+...|..+-.++.+
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKE 89 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3445555666666666666666552211 11112222 25666666666666655542 1134556666666644
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 045820 85 LNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163 (225)
Q Consensus 85 ~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 163 (225)
. |++++|.+.|++..+. .| +...|+.+-.+|.+.|++++|+..|++..+..-
T Consensus 90 ~----------------g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--------- 142 (723)
T 4gyw_A 90 M----------------QDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP--------- 142 (723)
T ss_dssp T----------------TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---------
T ss_pred c----------------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------
Confidence 4 5555555555555442 45 577899999999999999999999999887642
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 164 l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
-+...|..+...|...|++++|.+.+++..+
T Consensus 143 ----------~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 143 ----------DFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp ----------CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred ----------CChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 3567899999999999999999988887754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-06 Score=79.12 Aligned_cols=198 Identities=12% Similarity=0.070 Sum_probs=146.9
Q ss_pred CCCchhhHhhhcCCCCCChhhcchhhcCcchh-hhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 8 SPTPFSVLLVDSPSRSPSAAESLDLKENPRSL-QAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
.++..+..+-.++...|++++|++.+.+.+.. .+..+..++ +.|++++|.+.+..-++.. +++...+.+..+|++.
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT 1180 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhh
Confidence 34567778889999999999999999876432 344555555 8899999999998766653 4444455699999999
Q ss_pred CCHHHHHHHHHHH------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 86 NEQDTAVKFFSNH------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 86 ~~~~~a~~~~~~~------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
++++....+.+.. ...|++++|..+|... ..|..+...|.+.|++++|.+.+++..+
T Consensus 1181 ~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n-- 1249 (1630)
T 1xi4_A 1181 NRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANS-- 1249 (1630)
T ss_pred cCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCC--
Confidence 9988655554222 6779999999999974 4899999999999999999999987632
Q ss_pred CCccHHHHHHHH------------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 154 VTQNVVTLIQLL------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 154 ~~p~~~t~~~l~------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
..+|..+- ..+..++..+...+..++..|.+.|.+++|+.+++.-.... +-....|+-|-..|
T Consensus 1250 ----~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLy 1324 (1630)
T 1xi4_A 1250 ----TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 1324 (1630)
T ss_pred ----HHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHH
Confidence 23433211 23333466678889999999999999999999997766432 33445666666666
Q ss_pred hc
Q 045820 222 DQ 223 (225)
Q Consensus 222 ~~ 223 (225)
++
T Consensus 1325 aK 1326 (1630)
T 1xi4_A 1325 SK 1326 (1630)
T ss_pred Hh
Confidence 54
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.8e-07 Score=77.22 Aligned_cols=168 Identities=13% Similarity=-0.024 Sum_probs=132.3
Q ss_pred chhhHhhhcCCCCCCh-hhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSA-AESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 82 (225)
..+..+-..+...|++ ++|++.+.+.... .+..+-. ..+.|++++|...|++..+. .|+...|..+-..+
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~ 180 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVL 180 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHH
Confidence 4555777889999999 9999988773322 1222222 33889999999999998876 46778899999999
Q ss_pred Hhc---------CCHHHHHHHHHHH------------------Hhc--------CCHHHHHHHHHHHhhCCCCC----CH
Q 045820 83 VML---------NEQDTAVKFFSNH------------------LMV--------GRVEEAYEMLMNVKNDGLKP----DV 123 (225)
Q Consensus 83 ~~~---------~~~~~a~~~~~~~------------------~~~--------g~~~~a~~~~~~m~~~g~~p----~~ 123 (225)
... |++++|...|++. ... |++++|...|++..+. .| +.
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 258 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNP 258 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCH
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCH
Confidence 999 9999999999877 334 8899999999998764 34 67
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
..|..+-.+|.+.|++++|...|++..+..- -+...+..+...+...|++++|.+.+..
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------------------~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAAALDP-------------------AWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7899999999999999999999999887542 3456788888888888888888865543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.1e-06 Score=63.69 Aligned_cols=151 Identities=16% Similarity=0.095 Sum_probs=105.4
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH---------------------HhcCCHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------------------LMVGRVE 105 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---------------------~~~g~~~ 105 (225)
.+..|++++|+..|++..+.. +-+...|..+...+...|++++|...|+.. ...|+++
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHH
Confidence 458899999999999988763 235568889999998889888888887766 4557777
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHH-H
Q 045820 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVI-Q 184 (225)
Q Consensus 106 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li-~ 184 (225)
+|.+.|++..+.. +-+..+|..+-..|.+.|++++|...|++..+... .+...|..+. .
T Consensus 92 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-------------------~~~~~~~~l~~~ 151 (272)
T 3u4t_A 92 LAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-------------------TDPKVFYELGQA 151 (272)
T ss_dssp HHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-------------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-------------------CcHHHHHHHHHH
Confidence 7777777766532 12445677777777777777777777776665421 3455666666 4
Q ss_pred HHHccCcHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHh
Q 045820 185 ALCGVGKIHKALLLLFLMYEHGKIPS-RTSHDMLIKKL 221 (225)
Q Consensus 185 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~ 221 (225)
.|. .+++++|.+.|++..+.. |+ ...+..+-..+
T Consensus 152 ~~~-~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 186 (272)
T 3u4t_A 152 YYY-NKEYVKADSSFVKVLELK--PNIYIGYLWRARAN 186 (272)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 444 458999999999988743 33 44444444443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.7e-06 Score=61.29 Aligned_cols=161 Identities=14% Similarity=0.047 Sum_probs=85.5
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
..|++++|+..|+...+..-.++...+..+-.++...|++++|...|+.. ...|++++|...
T Consensus 19 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 98 (228)
T 4i17_A 19 NAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIAT 98 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHH
Confidence 44555555555554444332234444444444455555555555544443 445666677777
Q ss_pred HHHHhhCCCCC-CH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHH-hh---------
Q 045820 111 LMNVKNDGLKP-DV-------YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN---VVTLIQLLQR-LE--------- 169 (225)
Q Consensus 111 ~~~m~~~g~~p-~~-------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~l~~~-~~--------- 169 (225)
|++..+. .| +. ..|..+-..+.+.|++++|...|++..+. .|+ ...+..+-.. ..
T Consensus 99 ~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~~~~~~a 174 (228)
T 4i17_A 99 LTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGADVLRKA 174 (228)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666553 23 33 45777888889999999999999998865 443 1122111100 00
Q ss_pred -cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 045820 170 -MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217 (225)
Q Consensus 170 -~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 217 (225)
.-...+...|.... ....+.+++|...+++..+. .|+......+
T Consensus 175 ~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~ 219 (228)
T 4i17_A 175 TPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQM 219 (228)
T ss_dssp GGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 00011222232222 12234459999999998874 4554433333
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.61 E-value=4.7e-06 Score=55.16 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=87.9
Q ss_pred hhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 13 SVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
+..+...+.+.|++++|...+.+..... +..+.. ....|++++|...|+++.+.+ +.+...|..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 4456677888899999999887743221 222222 338899999999999988764 33566787788888665
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 86 ~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
|++++|.. .|+++.+.. +.+..++..+...+.+.|++++|...++++.+..
T Consensus 83 ~~~~~A~~----------------~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 83 GDYDEAIE----------------YYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TCHHHHHH----------------HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHH----------------HHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 55555544 444444322 2356788889999999999999999999988653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-06 Score=71.08 Aligned_cols=154 Identities=11% Similarity=-0.062 Sum_probs=118.9
Q ss_pred HhCCH-HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-----------------Hhc---------
Q 045820 49 KASPL-KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-----------------LMV--------- 101 (225)
Q Consensus 49 ~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-----------------~~~--------- 101 (225)
..|++ ++|+..|++..+.. +-+...|..+-..|.+.|++++|...|+.. ...
T Consensus 114 ~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~ 192 (474)
T 4abn_A 114 VTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHS 192 (474)
T ss_dssp SSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHH
T ss_pred hccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhh
Confidence 77899 99999999887763 335788999999999999999999988776 345
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCC
Q 045820 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV--------GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173 (225)
Q Consensus 102 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~ 173 (225)
|++++|...|++..+.. +-+...|..+-.+|... |++++|...|++..+..- . ..
T Consensus 193 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~--------------~~ 255 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR--K--------------AS 255 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG--G--------------GG
T ss_pred hhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC--C--------------cc
Confidence 88899999999887642 23577888888888888 889999999998887531 0 00
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
-+...|..+-.+|...|++++|.+.|++..+.. +-+...+..+-..+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLL 302 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 267889999999999999999999999998743 22344455554444
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.8e-06 Score=72.71 Aligned_cols=137 Identities=12% Similarity=0.080 Sum_probs=106.2
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYT 127 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~ 127 (225)
+.|++++|+..|++..+.. +-+..+|+.+-.+|.+.|++++|...| ++..+ +.| +...|+
T Consensus 21 ~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~----------------~~Al~--l~P~~~~a~~ 81 (723)
T 4gyw_A 21 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHY----------------KEAIR--ISPTFADAYS 81 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHH--HCTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH----------------HHHHH--hCCCCHHHHH
Confidence 8899999999999887763 225677888888886666655555544 44443 245 577899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCC
Q 045820 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207 (225)
Q Consensus 128 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 207 (225)
.+-.+|.+.|++++|...|++..+..- -+...|+.+-..|.+.|++++|++.|++..+.
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P-------------------~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-- 140 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINP-------------------AFADAHSNLASIHKDSGNIPEAIASYRTALKL-- 140 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 999999999999999999999887642 35678999999999999999999999999874
Q ss_pred CC-CHHHHHHHHHHhhcCC
Q 045820 208 IP-SRTSHDMLIKKLDQQP 225 (225)
Q Consensus 208 ~p-~~~~~~~ll~~~~~~g 225 (225)
.| +...+..+..+|.+.|
T Consensus 141 ~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 141 KPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp CSCCHHHHHHHHHHHHHTT
T ss_pred CCCChHHHhhhhhHHHhcc
Confidence 35 4567777777766543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.3e-05 Score=65.26 Aligned_cols=135 Identities=6% Similarity=0.021 Sum_probs=80.8
Q ss_pred hCCHH-------HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------------HhcCC
Q 045820 50 ASPLK-------ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------------LMVGR 103 (225)
Q Consensus 50 ~~~~~-------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------~~~g~ 103 (225)
.|+++ +|..+|++-.+.-.+-+...|..+...+.+.|++++|..+|+.. .+.|+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence 47766 77888877765322335777888888887777777777777655 23455
Q ss_pred HHHHHHHHHHHhhCCCCCC-HHhHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHH
Q 045820 104 VEEAYEMLMNVKNDGLKPD-VYTYTAI-MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181 (225)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p~-~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~ 181 (225)
+++|.++|++..+. .|+ ...|-.. ...+...|+.++|..+|++..+.. | -+...|..
T Consensus 372 ~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p-----------------~~~~~~~~ 430 (530)
T 2ooe_A 372 IKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--G-----------------DIPEYVLA 430 (530)
T ss_dssp HHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--T-----------------TCHHHHHH
T ss_pred HHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--C-----------------CCHHHHHH
Confidence 66666666666543 121 1112111 111234666666666666655432 1 24566666
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhc
Q 045820 182 VIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 182 li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
++..+.+.|+.++|..+|+.....
T Consensus 431 ~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 431 YIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCHhhHHHHHHHHHhc
Confidence 666666777777777777776654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.51 E-value=9.2e-06 Score=53.05 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 72 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
...|..+...+...|+++.|.. .|+++.+.. +.+..++..+...+.+.|++++|...++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~----------------~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIE----------------YYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH----------------HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHH----------------HHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566667777755555555544 444444321 23677889999999999999999999999987
Q ss_pred cCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 152 ~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
... .+..++..+...|...|++++|...++++.+.. +-+...+..+-..+.+.|
T Consensus 72 ~~~-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 72 LDP-------------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHC
T ss_pred hCC-------------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcc
Confidence 642 466788899999999999999999999998753 234555666655555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.51 E-value=5.2e-06 Score=66.54 Aligned_cols=154 Identities=8% Similarity=0.110 Sum_probs=123.1
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHH------------------HhcCCHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE-QDTAVKFFSNH------------------LMVGRVEEAYE 109 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~------------------~~~g~~~~a~~ 109 (225)
+.|++++|+..|++..+.. +-+...|+.+-.++.+.|+ +++|...|++. ...|++++|..
T Consensus 109 ~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp HTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred HCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 7799999999999998763 3367789999999999996 99999999887 56789999999
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc-
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG- 188 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~- 188 (225)
.|++..+.. +-+...|..+-.++.+.|++++|+..++++.+... -+...|+.+-..+.+
T Consensus 188 ~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-------------------~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 188 FIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-------------------RNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHh
Confidence 999988742 23778899999999999999999999999998653 367788888888888
Q ss_pred cCcHHHH-----HHHHHHHHhcCCCC-CHHHHHHHHHHhhcCC
Q 045820 189 VGKIHKA-----LLLLFLMYEHGKIP-SRTSHDMLIKKLDQQP 225 (225)
Q Consensus 189 ~g~~~~a-----~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 225 (225)
.|..++| +..+++.++. .| +...|..+-..|.+.|
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG 288 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC
T ss_pred cCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccC
Confidence 6665777 4778887763 34 4567777666666543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-05 Score=60.32 Aligned_cols=63 Identities=6% Similarity=-0.065 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc----------CcHHHHH
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV----------GKIHKAL 196 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~----------g~~~~a~ 196 (225)
-.+-..|.+.|++++|...|++..+..-. . ......+..+..+|... |++++|.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~--------------~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~ 215 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPD--T--------------PWADDALVGAMRAYIAYAEQSVRARQPERYRRAV 215 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--S--------------TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCC--C--------------chHHHHHHHHHHHHHHhcccchhhcccchHHHHH
Confidence 45577899999999999999999875321 0 01245677777777765 8999999
Q ss_pred HHHHHHHhc
Q 045820 197 LLLFLMYEH 205 (225)
Q Consensus 197 ~~~~~m~~~ 205 (225)
..+++..+.
T Consensus 216 ~~~~~~~~~ 224 (261)
T 3qky_A 216 ELYERLLQI 224 (261)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999874
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-05 Score=62.48 Aligned_cols=126 Identities=17% Similarity=0.136 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--------------------HhcCCHHHHHHHHHHHh
Q 045820 56 RIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--------------------LMVGRVEEAYEMLMNVK 115 (225)
Q Consensus 56 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------~~~g~~~~a~~~~~~m~ 115 (225)
++..|+++.+.+ .++..++..+-.++...|++++|.+++.+. .+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665554 445555556667777777777777665443 55677888888888887
Q ss_pred hCCCCC-----CHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 045820 116 NDGLKP-----DVYTYTAIMDGFCK----VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQAL 186 (225)
Q Consensus 116 ~~g~~p-----~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~ 186 (225)
+. .| +..+...+..++.. .+++++|..+|+++.+.. |+..+-..++.++
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--------------------p~~~~~~lLln~~ 221 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--------------------PTWKTQLGLLNLH 221 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--------------------CSHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--------------------CCcccHHHHHHHH
Confidence 63 45 24455555555332 348888999999886542 5434444555589
Q ss_pred HccCcHHHHHHHHHHHHh
Q 045820 187 CGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 187 ~~~g~~~~a~~~~~~m~~ 204 (225)
.+.|++++|.+.++.+.+
T Consensus 222 ~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 222 LQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHTCHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999997765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.7e-05 Score=56.31 Aligned_cols=133 Identities=15% Similarity=0.071 Sum_probs=95.6
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|+..|++.. .|+...|..+-..+.+.|++++|...|+. ..+.. +.+...|
T Consensus 16 ~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~----------------al~~~-~~~~~~~ 74 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTR----------------SINRD-KHLAVAY 74 (213)
T ss_dssp HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------HHHHC-TTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHH----------------HHHhC-ccchHHH
Confidence 458899999999998773 66888899899999776666666555554 33321 3367789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcC--CCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMG--HIP-RTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~--~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
..+-.+|.+.|++++|...|++..+..-...... ....+ ..| +...|..+-.+|.+.|++++|...|+...
T Consensus 75 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 75 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHH------HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999999999999999999987532100000 00000 001 23678888999999999999999999998
Q ss_pred hcC
Q 045820 204 EHG 206 (225)
Q Consensus 204 ~~g 206 (225)
+..
T Consensus 149 ~~~ 151 (213)
T 1hh8_A 149 SMK 151 (213)
T ss_dssp TTC
T ss_pred HcC
Confidence 754
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.6e-05 Score=57.40 Aligned_cols=88 Identities=8% Similarity=0.049 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCC-HHhH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 045820 101 VGRVEEAYEMLMNVKNDGLKPD-VYTY-----------------TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~~g~~p~-~~~~-----------------~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 162 (225)
.|+.++|...|++..+. .|+ ...+ -.+-..|.+.|++++|...|+++.+.--. ..
T Consensus 109 ~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~--- 181 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD--TQ--- 181 (225)
T ss_dssp CHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--SH---
T ss_pred cHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC--CC---
Confidence 46777777777777654 232 2222 23455788999999999999999875311 00
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 163 ~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
.....+..+..+|.+.|+.++|.+.++.+...+
T Consensus 182 -----------~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 182 -----------ATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----------ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 112568888999999999999999999988754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=5.4e-06 Score=69.69 Aligned_cols=147 Identities=5% Similarity=-0.097 Sum_probs=92.6
Q ss_pred CCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045820 23 SPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF 95 (225)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 95 (225)
.|++++|++.+++..... +..+-. ..+.|++++|...|++..+.. +-+...|..+-..|.+.|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366777777777633221 112222 337899999999998887663 335667777878886666665555554
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC
Q 045820 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175 (225)
Q Consensus 96 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~ 175 (225)
+ +..+.. +-+...|..+-.+|.+.|++++|...+++..+..- .+
T Consensus 81 ~----------------~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------------------~~ 124 (568)
T 2vsy_A 81 Q----------------QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-------------------EE 124 (568)
T ss_dssp H----------------HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TC
T ss_pred H----------------HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CC
Confidence 4 443321 23567888888999999999999999999887642 35
Q ss_pred HHHHHHHHHHHHcc---CcHHHHHHHHHHHHhcC
Q 045820 176 TITFNNVIQALCGV---GKIHKALLLLFLMYEHG 206 (225)
Q Consensus 176 ~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g 206 (225)
...+..+...+... |+.++|.+.+++..+.+
T Consensus 125 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 125 PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 67788888888888 99999999999887653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.43 E-value=8.9e-06 Score=64.73 Aligned_cols=189 Identities=10% Similarity=-0.018 Sum_probs=126.5
Q ss_pred hhhcCCCCCChhhcchhhcCcchh-------h-----hHHHHH-HHHhCCHHHHHHHHHHHHhc----CC--CCChhhHH
Q 045820 16 LVDSPSRSPSAAESLDLKENPRSL-------Q-----AQRFVD-KIKASPLKERIDIFNSIKKD----GT--NWSVSDFN 76 (225)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~-------~-----~~~l~~-~~~~~~~~~a~~~~~~m~~~----g~--~~~~~~~~ 76 (225)
.-..+...|++++|+..+.+.... . +..+-. ....|++++|+..+++..+. +- .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344577889999999888774221 1 111112 23789999999998876543 11 11245688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH------------------------HhcCCHHHHHHHHHHHhh----CCC-CCCHHhHH
Q 045820 77 DLLMALVMLNEQDTAVKFFSNH------------------------LMVGRVEEAYEMLMNVKN----DGL-KPDVYTYT 127 (225)
Q Consensus 77 ~li~~~~~~~~~~~a~~~~~~~------------------------~~~g~~~~a~~~~~~m~~----~g~-~p~~~~~~ 127 (225)
.+-..|...|++++|...|++. ...|++++|.+.|.+..+ .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888999999999999988765 567999999999998765 133 23456789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC---Ccc-HHHHHHHHHHh----------------h-cCCCC-CHHHHHHHHHH
Q 045820 128 AIMDGFCKVGRSNEAMELLNEAIERGV---TQN-VVTLIQLLQRL----------------E-MGHIP-RTITFNNVIQA 185 (225)
Q Consensus 128 ~ll~~~~~~g~~~~a~~~~~~m~~~g~---~p~-~~t~~~l~~~~----------------~-~~~~p-~~~~~~~li~~ 185 (225)
.+-..|.+.|++++|...+++..+... .|. ...+..+-... + .+..| ....+..+-..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999988765421 111 11122221111 1 11112 23356677788
Q ss_pred HHccCcHHHHHHHHHHHHh
Q 045820 186 LCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 186 ~~~~g~~~~a~~~~~~m~~ 204 (225)
|...|++++|...+++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 8888888888888887764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-06 Score=70.35 Aligned_cols=211 Identities=9% Similarity=-0.016 Sum_probs=114.2
Q ss_pred HhhhcCCCCCChhhcchhhcCc-----chh-----hhHHHHH-HHHhCCHHHHHHHHHHHHhc----CC-CCChhhHHHH
Q 045820 15 LLVDSPSRSPSAAESLDLKENP-----RSL-----QAQRFVD-KIKASPLKERIDIFNSIKKD----GT-NWSVSDFNDL 78 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~-----~~~-----~~~~l~~-~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~l 78 (225)
.+-..+...|++++|+..+.+. ... .+..+.. ....|++++|...|++..+. +- .....++..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 4555667777777777766551 111 1222222 23667777777777665432 11 2234556666
Q ss_pred HHHHHhcCCHHHHHHHHHHH------------------------HhcCC-----------------HHHHHHHHHHHhhC
Q 045820 79 LMALVMLNEQDTAVKFFSNH------------------------LMVGR-----------------VEEAYEMLMNVKND 117 (225)
Q Consensus 79 i~~~~~~~~~~~a~~~~~~~------------------------~~~g~-----------------~~~a~~~~~~m~~~ 117 (225)
-..|...|+++.|...|++. ...|+ +++|.+.+.+..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 67777777777777766554 34466 67777666664321
Q ss_pred ----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccH----HHHHHHH--------------------HH
Q 045820 118 ----GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNV----VTLIQLL--------------------QR 167 (225)
Q Consensus 118 ----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~----~t~~~l~--------------------~~ 167 (225)
+-.+ ...++..+-..|...|++++|...+++..+.... ++. .++..+- ..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1112 2345666777777777777777777766543110 110 1121111 00
Q ss_pred hhc-CC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHhhcCC
Q 045820 168 LEM-GH-IPRTITFNNVIQALCGVGKIHKALLLLFLMYEH----GKIP-SRTSHDMLIKKLDQQP 225 (225)
Q Consensus 168 ~~~-~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g 225 (225)
... +. .....++..+...|...|++++|...+++..+. +-.+ ...++..+-..|.+.|
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 357 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Confidence 010 00 012456777888888888888888888887653 1111 1235555555555443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.39 E-value=3e-05 Score=64.53 Aligned_cols=162 Identities=10% Similarity=0.049 Sum_probs=125.4
Q ss_pred CCChh-------hcchhhcCcch------hh-hHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCC-h-hhHHHHHHHHHhc
Q 045820 23 SPSAA-------ESLDLKENPRS------LQ-AQRFVDK-IKASPLKERIDIFNSIKKDGTNWS-V-SDFNDLLMALVML 85 (225)
Q Consensus 23 ~~~~~-------~a~~~~~~~~~------~~-~~~l~~~-~~~~~~~~a~~~~~~m~~~g~~~~-~-~~~~~li~~~~~~ 85 (225)
.|+++ +|..++++... .. +..+... .+.|++++|..+|++..+. .|+ . ..|..+...+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHh
Confidence 57765 77777665322 11 1122222 2789999999999999875 454 2 5899999999999
Q ss_pred CCHHHHHHHHHHH-------------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHH
Q 045820 86 NEQDTAVKFFSNH-------------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMEL 145 (225)
Q Consensus 86 ~~~~~a~~~~~~~-------------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 145 (225)
|+++.|.++|+.. ...|+.++|..+|++..+. .| +...|..++..+.+.|+.++|..+
T Consensus 370 ~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 9999999999876 2479999999999988764 34 678899999999999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 146 LNEAIERGVTQNVVTLIQLLQRLEMGHIP--RTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 146 ~~~m~~~g~~p~~~t~~~l~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
|++....+-. .| ....|...+.-....|+.+.+..+++.+.+.
T Consensus 448 ~~~al~~~~~-----------------~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 448 FERVLTSGSL-----------------PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSCCS-----------------CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCC-----------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999886421 02 2458888888888899999999999998764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.7e-05 Score=56.39 Aligned_cols=137 Identities=12% Similarity=-0.004 Sum_probs=101.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHH
Q 045820 70 WSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAI 129 (225)
Q Consensus 70 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l 129 (225)
.|+..|...-..+.+.|++++|...|+.. ...|++++|.+.|++..+. .| +...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 35577888888899999999999988776 5568899999999988764 34 56678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC
Q 045820 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 130 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
-..|.+.|++++|...+++..+..-. +...+..+ ...|..+-..+...|++++|.+.|++..+. .|
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~-----------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p 148 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLY-----------AIYYLKEGQKFQQAGNIEKAEENYKHATDV--TS 148 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SC
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHH-----------HHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CC
Confidence 99999999999999999988875321 00000000 145777778888999999999999999864 56
Q ss_pred C---HHHHHHHHHHhh
Q 045820 210 S---RTSHDMLIKKLD 222 (225)
Q Consensus 210 ~---~~~~~~ll~~~~ 222 (225)
+ ...+..+-..|.
T Consensus 149 ~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 149 KKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHH
Confidence 5 345555555544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.1e-06 Score=66.97 Aligned_cols=30 Identities=13% Similarity=0.003 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 176 TITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
..+|..+...|...|++++|.+.+++..+.
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 457888889999999999999999988653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.4e-06 Score=65.76 Aligned_cols=179 Identities=11% Similarity=0.051 Sum_probs=107.9
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhh------------hHHHHH-HHHhCCHHHHHHHHHHHHhc----CCC-CChh
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQ------------AQRFVD-KIKASPLKERIDIFNSIKKD----GTN-WSVS 73 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~l~~-~~~~~~~~~a~~~~~~m~~~----g~~-~~~~ 73 (225)
.+..+...+...|++++|++.+.+..... +..+.. ....|++++|...+++..+. +-. ....
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 34466667778888888887776632221 011111 22678888888888765432 111 1133
Q ss_pred hHHHHHHHHHhcCC--------------------HHHHHHHHHHH------------------------HhcCCHHHHHH
Q 045820 74 DFNDLLMALVMLNE--------------------QDTAVKFFSNH------------------------LMVGRVEEAYE 109 (225)
Q Consensus 74 ~~~~li~~~~~~~~--------------------~~~a~~~~~~~------------------------~~~g~~~~a~~ 109 (225)
++..+-..+...|+ ++.|...+++. ...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 67777777777888 77777766554 45677888887
Q ss_pred HHHHHhhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 045820 110 MLMNVKND----GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVVTLIQLLQRLEMGHIPRTITFNNVI 183 (225)
Q Consensus 110 ~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~l~~~~~~~~~p~~~~~~~li 183 (225)
.+++..+. +..+ ...++..+...|.+.|++++|...+++..+.... .+.. ....++..+.
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~la 270 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--------------VEAQSCYSLG 270 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh--------------HHHHHHHHHH
Confidence 77776531 1111 1236777777778888888888877776543110 0000 1134566666
Q ss_pred HHHHccCcHHHHHHHHHHHHh
Q 045820 184 QALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..|...|++++|...+++..+
T Consensus 271 ~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 271 NTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 777777777777777776654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.1e-06 Score=68.24 Aligned_cols=177 Identities=11% Similarity=0.057 Sum_probs=90.7
Q ss_pred hHhhhcCCCCCChhhcchhhcCcchhh------------hHHHHH-HHHhCCHHHHHHHHHHHHhc----CC-CCChhhH
Q 045820 14 VLLVDSPSRSPSAAESLDLKENPRSLQ------------AQRFVD-KIKASPLKERIDIFNSIKKD----GT-NWSVSDF 75 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~l~~-~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~ 75 (225)
..+...+...|++++|+..+.+..... +..+.. ....|++++|...+++..+. +- .....++
T Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 130 (406)
T 3sf4_A 51 SQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL 130 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 345555666666666666655422110 001111 12566666666666554332 10 0113355
Q ss_pred HHHHHHHHhcCC--------------------HHHHHHHHHHH------------------------HhcCCHHHHHHHH
Q 045820 76 NDLLMALVMLNE--------------------QDTAVKFFSNH------------------------LMVGRVEEAYEML 111 (225)
Q Consensus 76 ~~li~~~~~~~~--------------------~~~a~~~~~~~------------------------~~~g~~~~a~~~~ 111 (225)
..+-..|...|+ ++.|...+++. ...|++++|...|
T Consensus 131 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 210 (406)
T 3sf4_A 131 YNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 210 (406)
T ss_dssp HHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHH
T ss_pred HHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 566666666666 66666555443 4456666666666
Q ss_pred HHHhhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 045820 112 MNVKND----GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVVTLIQLLQRLEMGHIPRTITFNNVIQA 185 (225)
Q Consensus 112 ~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~l~~~~~~~~~p~~~~~~~li~~ 185 (225)
++..+. +..+ ...+|..+-..|...|++++|...+++..+.... ++.. ....++..+...
T Consensus 211 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~la~~ 276 (406)
T 3sf4_A 211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--------------VEAQSCYSLGNT 276 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch--------------HHHHHHHHHHHH
Confidence 665431 1111 1225566666666666666666666655432100 0000 013456666677
Q ss_pred HHccCcHHHHHHHHHHHHh
Q 045820 186 LCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 186 ~~~~g~~~~a~~~~~~m~~ 204 (225)
|...|++++|...+++..+
T Consensus 277 ~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 277 YTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHH
Confidence 7777777777777776654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.36 E-value=9.8e-06 Score=69.79 Aligned_cols=153 Identities=15% Similarity=0.054 Sum_probs=119.9
Q ss_pred HHHHHhCCHHHHHHHHHHHH--------hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------
Q 045820 45 VDKIKASPLKERIDIFNSIK--------KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------ 98 (225)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------ 98 (225)
...+..|++++|+..+++.. +. -+.+...|..+-.++.+.|++++|...|++.
T Consensus 399 ~~a~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 399 LQATVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAE 477 (681)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred hhcccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 34468899999999999887 22 2345677888888999999999999988777
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
...|++++|.+.|++..+. .| +...|..+-.+|.+.|++++ ...|++..+..- -+..
T Consensus 478 ~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-------------------~~~~ 535 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-------------------GVIS 535 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-------------------TCHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-------------------chHH
Confidence 6678999999999988764 34 56778888889999999999 999988887542 3567
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhh
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS-RTSHDMLIKKLD 222 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 222 (225)
.|..+-.+|.+.|++++|.+.|++..+. .|+ ...+..+..++.
T Consensus 536 a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 536 AAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLL 579 (681)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHH
Confidence 8899999999999999999999987753 465 355555555543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.1e-06 Score=65.11 Aligned_cols=181 Identities=12% Similarity=0.052 Sum_probs=128.6
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhh------------hHHHHH-HHHhCC--------------------HHHHHH
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQ------------AQRFVD-KIKASP--------------------LKERID 58 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~l~~-~~~~~~--------------------~~~a~~ 58 (225)
.+..+...+...|++++|...+.+..... +..+.. ....|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 34466777888999999998887733221 111212 226777 899998
Q ss_pred HHHHHHhc----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------HhcCCHHHHHH
Q 045820 59 IFNSIKKD----GTN-WSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------LMVGRVEEAYE 109 (225)
Q Consensus 59 ~~~~m~~~----g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------~~~g~~~~a~~ 109 (225)
.+++..+. +-. ....++..+-..+...|+++.|...+++. ...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88775432 211 22446888888999999999999988776 56799999999
Q ss_pred HHHHHhhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 045820 110 MLMNVKND----GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQ 184 (225)
Q Consensus 110 ~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~ 184 (225)
.+++..+. +..+ ...++..+-..|.+.|++++|...+++..+..... ........++..+..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------------~~~~~~~~~~~~la~ 311 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-------------KDRIGEGRACWSLGN 311 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-------------CCcHHHHHHHHHHHH
Confidence 99987642 2111 15578889999999999999999999876542110 000012457788889
Q ss_pred HHHccCcHHHHHHHHHHHHhc
Q 045820 185 ALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 185 ~~~~~g~~~~a~~~~~~m~~~ 205 (225)
.|.+.|++++|...+++..+.
T Consensus 312 ~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 312 AYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999998764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.6e-06 Score=66.85 Aligned_cols=179 Identities=12% Similarity=0.059 Sum_probs=128.7
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhh------------hHHHHH-HHHhCC--------------------HHHHHH
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQ------------AQRFVD-KIKASP--------------------LKERID 58 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~l~~-~~~~~~--------------------~~~a~~ 58 (225)
.+..+...+...|++++|+..+.+..... +..+.. ....|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 34466778889999999998887643221 111111 227788 999999
Q ss_pred HHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------HhcCCHHHHHH
Q 045820 59 IFNSIKKD----GTNW-SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------LMVGRVEEAYE 109 (225)
Q Consensus 59 ~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------~~~g~~~~a~~ 109 (225)
.+++..+. +-.| ...+|..+-..+...|++++|...+++. ...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88765432 2122 2446888889999999999999988776 56799999999
Q ss_pred HHHHHhhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 045820 110 MLMNVKND----GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVVTLIQLLQRLEMGHIPRTITFNNVI 183 (225)
Q Consensus 110 ~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~l~~~~~~~~~p~~~~~~~li 183 (225)
.+++..+. +..+ ...++..+-..|.+.|++++|...+++..+.... ++. .....++..+.
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--------------~~~~~~~~~la 314 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR--------------IGEGRACWSLG 314 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc--------------HHHHHHHHHHH
Confidence 99987642 2111 1567889999999999999999999987654211 000 01245788888
Q ss_pred HHHHccCcHHHHHHHHHHHHh
Q 045820 184 QALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..|...|++++|.+.+++..+
T Consensus 315 ~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 315 NAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.7e-05 Score=60.81 Aligned_cols=138 Identities=17% Similarity=0.100 Sum_probs=108.5
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAY 108 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~ 108 (225)
..+.|++++|...|++..+.. +-+...+..+-..+.+.|++++|...++.. ...++.+.|.
T Consensus 127 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~ 205 (287)
T 3qou_A 127 LMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEI 205 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccH
Confidence 348899999999999988763 336778889999999999999999988765 3445566677
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 045820 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG 188 (225)
Q Consensus 109 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~ 188 (225)
..|.+..+.. +.+...+..+-..+...|++++|...|.+..+..-. ..+...+..+...|..
T Consensus 206 ~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~-----------------~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 206 QQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT-----------------AADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------GGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-----------------cccchHHHHHHHHHHH
Confidence 7777766532 236778888899999999999999999998876421 0236788899999999
Q ss_pred cCcHHHHHHHHHHHH
Q 045820 189 VGKIHKALLLLFLMY 203 (225)
Q Consensus 189 ~g~~~~a~~~~~~m~ 203 (225)
.|+.++|...+++-.
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 999998888887654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.33 E-value=7.5e-06 Score=63.34 Aligned_cols=136 Identities=10% Similarity=0.007 Sum_probs=95.0
Q ss_pred HhCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------H--hc
Q 045820 49 KASPLKERIDIFNSIKKDGT-NWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------L--MV 101 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------~--~~ 101 (225)
..|++++|++++.+-...|- .-+...+..++..+.+.|+.+.|.+.++.| . ..
T Consensus 112 ~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~ 191 (310)
T 3mv2_B 112 ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK 191 (310)
T ss_dssp HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC
Confidence 67888888888877755543 236677788888888888888888888555 1 12
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----C---CccHHHHHHHHHHhhcCCC
Q 045820 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-----V---TQNVVTLIQLLQRLEMGHI 173 (225)
Q Consensus 102 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-----~---~p~~~t~~~l~~~~~~~~~ 173 (225)
++..+|..+|+++.+. .|+..+-..++.++.+.|++++|+..++.+.+.- - .|
T Consensus 192 ~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p----------------- 252 (310)
T 3mv2_B 192 ETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL----------------- 252 (310)
T ss_dssp STTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS-----------------
T ss_pred ccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC-----------------
Confidence 3889999999998764 3553444555558999999999999999776531 0 11
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
-|..+...+|......|+ +|.+++.++.+.
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 345555444444444565 778888888764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=6.9e-06 Score=56.67 Aligned_cols=137 Identities=10% Similarity=-0.017 Sum_probs=95.8
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYT 127 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~ 127 (225)
..|++++|+..+....... +-+...+-.+-..|.+.|++ ++|.+.|++..+. .| +..+|.
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~----------------~~A~~~~~~al~~--~p~~~~a~~ 69 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEY----------------DLAKKYICTYINV--QERDPKAHR 69 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCH----------------HHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCH----------------HHHHHHHHHHHHh--CCCCHHHHH
Confidence 4577888888887765431 22344555667777555555 4555555554442 34 678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHH-HHHHHhcC
Q 045820 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL-LFLMYEHG 206 (225)
Q Consensus 128 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g 206 (225)
.+-..|.+.|++++|...|++..+..- -+...|..+-..|.+.|+.++|.+. ++...+.
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l- 129 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELNP-------------------TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL- 129 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-
Confidence 999999999999999999999987642 3567889999999999998876655 5776653
Q ss_pred CCC-CHHHHHHHHHHhhcCC
Q 045820 207 KIP-SRTSHDMLIKKLDQQP 225 (225)
Q Consensus 207 ~~p-~~~~~~~ll~~~~~~g 225 (225)
.| +..+|...-..+.++|
T Consensus 130 -~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 130 -FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp -STTCHHHHHHHHHHHHTCC
T ss_pred -CcCCHHHHHHHHHHHHHhC
Confidence 34 5566766666666655
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.31 E-value=2e-05 Score=56.39 Aligned_cols=158 Identities=11% Similarity=0.021 Sum_probs=95.9
Q ss_pred CCCCChhhcch---hhcCcchhhhHH---HHH-HHHhCCHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCH
Q 045820 21 SRSPSAAESLD---LKENPRSLQAQR---FVD-KIKASPLKERIDIFNSIKKD----GTNW-SVSDFNDLLMALVMLNEQ 88 (225)
Q Consensus 21 ~~~~~~~~a~~---~~~~~~~~~~~~---l~~-~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~ 88 (225)
...|++++|.+ .+..-....... +-. ....|++++|...+++..+. +..+ ...++..+-..+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45788888887 554422111111 111 23788899999888776542 2222 344566666777677777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHH
Q 045820 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP--DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVVTLIQLL 165 (225)
Q Consensus 89 ~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~l~ 165 (225)
++|...+++. .+++. +.+-.| ....++.+-..+...|++++|...+++..+.... .+..
T Consensus 83 ~~A~~~~~~a---------l~~~~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------ 144 (203)
T 3gw4_A 83 DAARRCFLEE---------RELLA---SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV------ 144 (203)
T ss_dssp HHHHHHHHHH---------HHHHH---HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH------
T ss_pred HHHHHHHHHH---------HHHHH---HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH------
Confidence 6666655432 22222 222122 2456888889999999999999999987643110 0000
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 166 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.-..++..+-..+...|++++|.+.+++..+
T Consensus 145 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 145 --------AIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1133567788889999999999999988764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.8e-05 Score=60.82 Aligned_cols=156 Identities=12% Similarity=-0.081 Sum_probs=110.2
Q ss_pred ChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhc----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH-
Q 045820 25 SAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD----GTNWS-VSDFNDLLMALVMLNEQDTAVKFFSNH- 98 (225)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~- 98 (225)
++++|...+.+. .......|++++|...|++..+. |-.++ ..+|+.+-.+|.+.|++++|...|++.
T Consensus 32 ~~~~A~~~~~~a-------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 104 (292)
T 1qqe_A 32 KFEEAADLCVQA-------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (292)
T ss_dssp HHHHHHHHHHHH-------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 466666655443 11123678888888888765432 32222 467888888888889988888877555
Q ss_pred -----------------------Hhc-CCHHHHHHHHHHHhhC----CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 99 -----------------------LMV-GRVEEAYEMLMNVKND----GLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 99 -----------------------~~~-g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
... |++++|...|++..+. +-.+. ..+|+.+-..|.+.|++++|...|++.
T Consensus 105 ~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 184 (292)
T 1qqe_A 105 QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL 184 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 333 8899999888887642 11111 356888899999999999999999998
Q ss_pred HHcCCCccHHHHHHHHHHhhcCCCCCH-----HHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 150 IERGVTQNVVTLIQLLQRLEMGHIPRT-----ITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 150 ~~~g~~p~~~t~~~l~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.+..... ++. ..|..+..++...|++++|...|++..+
T Consensus 185 l~~~~~~-----------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 185 IKSSMGN-----------------RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHTTSSC-----------------TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHhcC-----------------CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8764321 111 2577788889999999999999998875
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.4e-05 Score=61.34 Aligned_cols=140 Identities=12% Similarity=0.052 Sum_probs=104.4
Q ss_pred HHhCCHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------
Q 045820 48 IKASPLKERIDIFNSIKKD----GTNW-SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------ 98 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------ 98 (225)
...|++++|+..|++..+. +-.+ ...+|..+-..|...|+++.|...+.+.
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 3789999999999987653 2122 3467888899999999999999887665
Q ss_pred -HhcCCHHHHHHHHHHHhhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCccHHHHHHHHHHh
Q 045820 99 -LMVGRVEEAYEMLMNVKND----GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIER----GVTQNVVTLIQLLQRL 168 (225)
Q Consensus 99 -~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~l~~~~ 168 (225)
...|++++|...|.+..+. +-.+ ...+++.+-..|...|++++|...+++..+. +..|
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~------------ 261 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP------------ 261 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG------------
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch------------
Confidence 4568999999988886542 2112 2246888888999999999999999887763 2211
Q ss_pred hcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 169 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
....++..+-..|.+.|++++|...+++..+
T Consensus 262 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 262 -----SLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp -----GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2356677888888888898888888887764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.2e-05 Score=60.77 Aligned_cols=187 Identities=7% Similarity=-0.006 Sum_probs=126.7
Q ss_pred hhcCCCCCChhhcchhhcCcchh--------h----hHHHHH-HHHhCCHHHHHHHHHHHHhc----CC-CC-ChhhHHH
Q 045820 17 VDSPSRSPSAAESLDLKENPRSL--------Q----AQRFVD-KIKASPLKERIDIFNSIKKD----GT-NW-SVSDFND 77 (225)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~--------~----~~~l~~-~~~~~~~~~a~~~~~~m~~~----g~-~~-~~~~~~~ 77 (225)
-..+...|++++|+..+.+.... . +..+-. ....|+++.|...+++..+. +- .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 33467889999999888763221 1 111222 23889999999998876432 11 11 3556888
Q ss_pred HHHHHHhcCCHHHHHHHHHHH------------------------HhcCCHHHHHHHHHHHhh-----CCCCCCHHhHHH
Q 045820 78 LLMALVMLNEQDTAVKFFSNH------------------------LMVGRVEEAYEMLMNVKN-----DGLKPDVYTYTA 128 (225)
Q Consensus 78 li~~~~~~~~~~~a~~~~~~~------------------------~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 128 (225)
+-..|...|++++|...|++. ...|++++|.+.|.+..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 888999999999999988665 567999999999998875 32 224677889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC---cc-HHHHHHHHHHh----------------h-cCCCCC-HHHHHHHHHHH
Q 045820 129 IMDGFCKVGRSNEAMELLNEAIERGVT---QN-VVTLIQLLQRL----------------E-MGHIPR-TITFNNVIQAL 186 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~~~g~~---p~-~~t~~~l~~~~----------------~-~~~~p~-~~~~~~li~~~ 186 (225)
+-..|.+.|++++|...+++..+.... |. ...+..+-... + .+..|+ ...+..+-..|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 999999999999999999998865322 11 22222222111 1 111122 23556677888
Q ss_pred HccCcHHHHHHHHHHHHh
Q 045820 187 CGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 187 ~~~g~~~~a~~~~~~m~~ 204 (225)
...|++++|...|++..+
T Consensus 347 ~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888889998888888764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-05 Score=57.19 Aligned_cols=159 Identities=13% Similarity=0.077 Sum_probs=105.0
Q ss_pred CchhhHhhhcCCCCCChhhcchhhcCcchhhh------HHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 045820 10 TPFSVLLVDSPSRSPSAAESLDLKENPRSLQA------QRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82 (225)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 82 (225)
..........+.+.|++++|+..+++.....- ..+.. ..+.|++++|+..|+...+.. |+...+ .+...+
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~-~~~~~~ 82 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYK-SLIAKL 82 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHH-HHHHHH
Confidence 34445556677788999999988887443321 11222 337899999999998876542 333322 222111
Q ss_pred HhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 045820 83 VMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161 (225)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 161 (225)
.. ...+...+|...|++..+. .| +...+..+-..+.+.|++++|...|++..+..-.+
T Consensus 83 ~~--------------~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----- 141 (176)
T 2r5s_A 83 EL--------------HQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA----- 141 (176)
T ss_dssp HH--------------HHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT-----
T ss_pred HH--------------HhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-----
Confidence 00 0001112356666666543 45 57888999999999999999999999988764210
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 162 ~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.+...+..+...+...|+.++|...|++...
T Consensus 142 ------------~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 142 ------------QDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp ------------TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ------------ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 2356888999999999999999999987654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.7e-05 Score=55.35 Aligned_cols=151 Identities=16% Similarity=0.105 Sum_probs=91.5
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCC-hhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHhcCCHHHHH
Q 045820 46 DKIKASPLKERIDIFNSIKKDGTNWS-VSDFND----------------LLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108 (225)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~ 108 (225)
..+..|++++|+..|++..+. .|+ ...|.. +-.++ ...|++++|.
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~----------------~~~g~~~~A~ 74 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAY----------------KKNRNYDKAY 74 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH----------------HHTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHH----------------HHCCCHHHHH
Confidence 345788899999888887765 332 333433 34444 3445556666
Q ss_pred HHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH---------------HHhhcCC
Q 045820 109 EMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---------------QRLEMGH 172 (225)
Q Consensus 109 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~---------------~~~~~~~ 172 (225)
..|++..+. .| +...|..+-..|.+.|++++|...|++..+..-. +..++..+- .....-.
T Consensus 75 ~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 75 LFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 666665543 34 5677888888888888888888888887765321 233333221 0111122
Q ss_pred CCCHHH--HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 045820 173 IPRTIT--FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219 (225)
Q Consensus 173 ~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 219 (225)
.|+... +...-.++...|++++|...|++..+ +.|+......+.+
T Consensus 152 ~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 152 SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 344333 33344455668999999999999986 4688776665544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.26 E-value=8.8e-05 Score=49.45 Aligned_cols=92 Identities=12% Similarity=0.032 Sum_probs=73.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|...+++..+..- .+...
T Consensus 24 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~a 83 (126)
T 4gco_A 24 FKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-------------------KFIKG 83 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-------------------hhhHH
Confidence 45566666777776665432 33678899999999999999999999999987643 46788
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHH
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 212 (225)
|..+-.+|...|++++|.+.|++..+. .|+..
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~ 115 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQV--DPSNE 115 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CcCCH
Confidence 999999999999999999999999874 46543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.3e-05 Score=50.50 Aligned_cols=119 Identities=11% Similarity=-0.007 Sum_probs=85.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 69 NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 69 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
..+...|..+-..+.+.|+++ +|...|++..+.. +.+...+..+...|.+.|++++|...+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~----------------~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 75 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYP----------------QAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEE 75 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSH----------------HHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHH----------------HHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 345566777777775555554 5555555544431 23677889999999999999999999999
Q ss_pred HHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 149 m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
..+..- .+...|..+...|.+.|++++|.+.+++..+.. +-+...+..+-..+.++
T Consensus 76 a~~~~~-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 76 CIQLEP-------------------TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHhCC-------------------CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 987642 456788889999999999999999999988642 12345566666555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.24 E-value=5.2e-05 Score=69.15 Aligned_cols=185 Identities=13% Similarity=0.080 Sum_probs=103.9
Q ss_pred hcCCCCCChhhcchhhcCcchhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 18 DSPSRSPSAAESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96 (225)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 96 (225)
..+...|.++||..++++-....- .+-..+ ..+++++|.++.++.. +..+|..+-.++.+.|++++|.+.|.
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~~~~-A~~VLie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDVNTS-AVQVLIEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCCHHH-HHHHHHHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345556777777777766542111 111122 5566777777766442 46667777777777777777776664
Q ss_pred HH-------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 045820 97 NH-------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163 (225)
Q Consensus 97 ~~-------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 163 (225)
+. .+.|++++|.+.|....+.. ++....+.+.-+|++.+++++...... .|+...|..
T Consensus 1130 KAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~ 1200 (1630)
T 1xi4_A 1130 KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQ 1200 (1630)
T ss_pred hcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHH
Confidence 44 55677777777776555432 232223346777777777665443321 222222222
Q ss_pred HHH-HhhcCC-------CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 164 LLQ-RLEMGH-------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 164 l~~-~~~~~~-------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
+-. ..+.|. =-....|..+..+|++.|++++|.+.+++. -+..+|.-+-.+|.++
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhh
Confidence 211 111110 001347788888888888888888887765 3557777666666543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=4.6e-05 Score=58.48 Aligned_cols=177 Identities=9% Similarity=-0.036 Sum_probs=118.0
Q ss_pred hhHhhhcCCCCCChhhcchhhcCcchh------------hhHHHHHHH-HhCCHHHHHHHHHHHHhc----CCCC-Chhh
Q 045820 13 SVLLVDSPSRSPSAAESLDLKENPRSL------------QAQRFVDKI-KASPLKERIDIFNSIKKD----GTNW-SVSD 74 (225)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~l~~~~-~~~~~~~a~~~~~~m~~~----g~~~-~~~~ 74 (225)
+......|...|++++|++.+.+.-.. .+..+-..+ +.|++++|+..|++-.+. |-.. -..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334455677889999999888763322 122233333 779999999999876543 2111 1457
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHH------------------------HhcCCHHHHHHHHHHHhhCCCCCCH------
Q 045820 75 FNDLLMALVML-NEQDTAVKFFSNH------------------------LMVGRVEEAYEMLMNVKNDGLKPDV------ 123 (225)
Q Consensus 75 ~~~li~~~~~~-~~~~~a~~~~~~~------------------------~~~g~~~~a~~~~~~m~~~g~~p~~------ 123 (225)
|+.+-..|... |++++|...|++. ...|++++|...|++..+.......
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 88888999996 9999999887655 5679999999999998875322221
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--ccCcHHHHHHHHHH
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALC--GVGKIHKALLLLFL 201 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~ 201 (225)
..|..+..++...|++++|...|++..+. .|+... ......+..++.+|. ..+++++|+..|+.
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~------------~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFAD------------SRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------------------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCC------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 15677788899999999999999987653 221100 011223455566665 45778888888876
Q ss_pred HH
Q 045820 202 MY 203 (225)
Q Consensus 202 m~ 203 (225)
+.
T Consensus 266 ~~ 267 (292)
T 1qqe_A 266 FM 267 (292)
T ss_dssp SS
T ss_pred CC
Confidence 54
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00011 Score=48.19 Aligned_cols=104 Identities=14% Similarity=0.048 Sum_probs=77.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
..|++++|...|++..... +.+...|..+...+...|++++|...+++..+... .+...|
T Consensus 24 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~ 83 (131)
T 2vyi_A 24 KVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-------------------AYSKAY 83 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHH
T ss_pred HccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-------------------cCHHHH
Confidence 3445555555555554422 23677889999999999999999999999887642 356788
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
..+...|...|++++|...+++..+.. +.+...+..+..++.+.
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHH
Confidence 888899999999999999999998753 23566666666666543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00017 Score=58.68 Aligned_cols=197 Identities=11% Similarity=-0.012 Sum_probs=116.8
Q ss_pred CchhhHhhhcCCCCCChhhcchhhcCcchh---------------hhHHHHH-HHHhCCHHHHHHHHHHHHhc-----C-
Q 045820 10 TPFSVLLVDSPSRSPSAAESLDLKENPRSL---------------QAQRFVD-KIKASPLKERIDIFNSIKKD-----G- 67 (225)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~l~~-~~~~~~~~~a~~~~~~m~~~-----g- 67 (225)
...|+.|-..+.+.|++++|++.+.+.... .+..+-. ....|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345556667777788888888777652211 1111211 22667777777776654321 0
Q ss_pred CC-CChhhHHHHHHHHHhc--CCHHHHHHHHHHH----------------------------------------------
Q 045820 68 TN-WSVSDFNDLLMALVML--NEQDTAVKFFSNH---------------------------------------------- 98 (225)
Q Consensus 68 ~~-~~~~~~~~li~~~~~~--~~~~~a~~~~~~~---------------------------------------------- 98 (225)
.. ....+++..-.++... +++++|...|++.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 11 1233444444444443 3466666666554
Q ss_pred -------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 99 -------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 99 -------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
...|+.++|.+++++..... +.+..+++.+-..|.+.|++++|...+++..+..-. +..++..+-
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHH
Confidence 12356677888887766532 335667888899999999999999999998875322 233332221
Q ss_pred --------------------------------HHhh---cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCC
Q 045820 166 --------------------------------QRLE---MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208 (225)
Q Consensus 166 --------------------------------~~~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 208 (225)
..++ .-...+..+|..+-..|...|++++|...|++..+....
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 0000 011234567888889999999999999999998875433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00012 Score=50.38 Aligned_cols=121 Identities=8% Similarity=-0.040 Sum_probs=87.4
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|...|++..+.. +.+..+|..+-..+...|++++|...|+ +..+.. +.+...|
T Consensus 23 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~----------------~a~~~~-~~~~~~~ 84 (166)
T 1a17_A 23 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDAT----------------RAIELD-KKYIKGY 84 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH----------------HHHHHC-TTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH----------------HHHHhC-cccHHHH
Confidence 348899999999999887763 3367778888888866666655555544 443321 2356788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHH--HHHHHHHccCcHHHHHHHHHHHHh
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN--NVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..+-..+.+.|++++|...|++..+..- .+...+. .....+...|++++|...+.....
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p-------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVVKVKP-------------------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8999999999999999999999987642 2333443 333447778999999999887643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.15 E-value=5e-05 Score=53.38 Aligned_cols=120 Identities=6% Similarity=0.055 Sum_probs=85.7
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 128 (225)
..|++++|...++...+.. +.+...|..+-..|...|+++.|...|+. ..+.. +.+...+..
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~----------------al~~~-p~~~~~~~~ 83 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQ----------------ALQLR-GENAELYAA 83 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------HHHHH-CSCHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH----------------HHHcC-CCCHHHHHH
Confidence 4677788888887776653 34667788888888666666655555544 33321 235667777
Q ss_pred HHHH-HHhcCCH--HHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 129 IMDG-FCKVGRS--NEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 129 ll~~-~~~~g~~--~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
+..+ |.+.|++ ++|...+++..+..- -+...|..+...|...|++++|...+++..+.
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALALDS-------------------NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhCC-------------------CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777 7789998 999999999887642 34677888889999999999999999998874
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00025 Score=51.63 Aligned_cols=137 Identities=12% Similarity=-0.027 Sum_probs=99.5
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHH--------------------HhcCCH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN----EQDTAVKFFSNH--------------------LMVGRV 104 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~~--------------------~~~g~~ 104 (225)
..+++++|...|++-.+.| +...+..|=..|.. + +.++|...|+.. ...++.
T Consensus 30 ~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~ 105 (212)
T 3rjv_A 30 SSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDV 105 (212)
T ss_dssp HHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCH
T ss_pred cCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCH
Confidence 6788888888888877765 45666666666666 5 788888887766 126788
Q ss_pred HHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 105 EEAYEMLMNVKNDGLK-PDVYTYTAIMDGFCK----VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
++|.++|.+..+.|.. -+...+..+-..|.. .+++++|...|++..+.+ .+...+
T Consensus 106 ~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--------------------~~~~a~ 165 (212)
T 3rjv_A 106 AHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--------------------RTGYAE 165 (212)
T ss_dssp HHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--------------------CTTHHH
T ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--------------------CCHHHH
Confidence 8999999888876532 126677888888888 789999999999988762 223455
Q ss_pred HHHHHHHHcc-C-----cHHHHHHHHHHHHhcCCCC
Q 045820 180 NNVIQALCGV-G-----KIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 180 ~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~~p 209 (225)
..|-..|... | +.++|..+|+...+.|...
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 5565666543 3 8999999999998887443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.14 E-value=4.4e-05 Score=59.04 Aligned_cols=140 Identities=12% Similarity=0.025 Sum_probs=93.0
Q ss_pred HhCCHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------H
Q 045820 49 KASPLKERIDIFNSIKKD----GTNW-SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------L 99 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------~ 99 (225)
..|++++|...|.+..+. |-.+ -..+|+.+-..|.+.|++++|...|++. .
T Consensus 48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 567788887777665432 1111 1346777777777777777777666543 3
Q ss_pred hcCCHHHHHHHHHHHhhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCC
Q 045820 100 MVGRVEEAYEMLMNVKND----GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p 174 (225)
. |++++|...|++..+. |-.+ ...+++.+-..|.+.|++++|...|++..+.... .+..+
T Consensus 128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~ 192 (307)
T 2ifu_A 128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE--------------MENYP 192 (307)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------TTCHH
T ss_pred c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------cCChh
Confidence 3 7888888888776531 2111 1457888899999999999999999988763210 00001
Q ss_pred C-HHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 175 R-TITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 175 ~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
+ ...+..+..++...|++++|...|++..
T Consensus 193 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 193 TCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 1 2356667777778899999999999887
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00079 Score=55.34 Aligned_cols=188 Identities=12% Similarity=0.077 Sum_probs=119.3
Q ss_pred CCChhhcchhhcCcchhhhHH----HHHHH-H----hCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHH
Q 045820 23 SPSAAESLDLKENPRSLQAQR----FVDKI-K----ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM----LNEQD 89 (225)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~----l~~~~-~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~ 89 (225)
.+++++|.+.+.+.-..+... +-..+ . .++.++|...|++..+.| +...+..|-..|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 677778877776643333222 22222 4 678888888888877665 55666667777777 67888
Q ss_pred HHHHHHHHH----------------Hh----cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHH
Q 045820 90 TAVKFFSNH----------------LM----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK----VGRSNEAMEL 145 (225)
Q Consensus 90 ~a~~~~~~~----------------~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~ 145 (225)
+|...|+.. .. .++.++|.+.|++..+.| +...+..+-..|.+ .++.++|...
T Consensus 133 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 888888766 11 567888888888877654 56677777777777 7888888888
Q ss_pred HHHHHHcCCCccHHHHHHHHHHhhcC--CC----------------CCHHHHHHHHHHHHc----cCcHHHHHHHHHHHH
Q 045820 146 LNEAIERGVTQNVVTLIQLLQRLEMG--HI----------------PRTITFNNVIQALCG----VGKIHKALLLLFLMY 203 (225)
Q Consensus 146 ~~~m~~~g~~p~~~t~~~l~~~~~~~--~~----------------p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~ 203 (225)
|++..+.|. ...+..+-.+...| .. .+...+..+-..|.. .++.++|..+|+...
T Consensus 210 ~~~a~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 210 YRKSATSGD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA 286 (490)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Confidence 888777653 22232222222111 11 234455555556665 778888888888877
Q ss_pred hcCCCCCHHHHHHHHHHhh
Q 045820 204 EHGKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 204 ~~g~~p~~~~~~~ll~~~~ 222 (225)
+.| +...+..|-..|.
T Consensus 287 ~~~---~~~a~~~Lg~~y~ 302 (490)
T 2xm6_A 287 EQG---NSDGQYYLAHLYD 302 (490)
T ss_dssp TTT---CHHHHHHHHHHHH
T ss_pred HcC---CHHHHHHHHHHHH
Confidence 654 3444444444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.12 E-value=3.8e-05 Score=53.17 Aligned_cols=91 Identities=16% Similarity=0.034 Sum_probs=73.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
.+.|++++|...|++.... .| +...|..+-.+|.+.|++++|...|++..+..- -+..
T Consensus 47 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-------------------~~~~ 105 (151)
T 3gyz_A 47 YNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-------------------NDYT 105 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-------------------SCCH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-------------------CCcH
Confidence 4456666666677666653 34 678899999999999999999999999988652 3567
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHH
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 212 (225)
.|..+-.+|...|++++|...|+...+.. |+..
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 88999999999999999999999998753 5543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0002 Score=56.85 Aligned_cols=144 Identities=13% Similarity=0.070 Sum_probs=102.5
Q ss_pred HHhCCHHHHHHHHHHHHhcCC-CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------
Q 045820 48 IKASPLKERIDIFNSIKKDGT-NW----SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------ 98 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~g~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------ 98 (225)
...|++++|+..|++..+..- .+ ...++..+-..|...|+++.|...+.+.
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 388999999999998765411 12 3456788888899999999888877654
Q ss_pred -HhcCCHHHHHHHHHHHhh----CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCC
Q 045820 99 -LMVGRVEEAYEMLMNVKN----DGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172 (225)
Q Consensus 99 -~~~g~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~ 172 (225)
...|++++|.+.|.+..+ .+-.+ ...+++.+-..|...|++++|...+++..+... ..+.
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~--------------~~~~ 257 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR--------------EKVP 257 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--------------HHCG
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--------------hhCC
Confidence 456888888888877654 12112 234577777888888888888888887765210 0011
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 173 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
.....++..+-..|.+.|++++|...+++..+.
T Consensus 258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 123567888889999999999999999988763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00046 Score=56.79 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM----LNEQDTAVKFFSNH 98 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~ 98 (225)
+++++|...|+...+.| +...+..+-..|.. .++.++|.+.|+..
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 45555555555554443 33344444444444 44555555555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00023 Score=55.81 Aligned_cols=144 Identities=10% Similarity=-0.039 Sum_probs=98.6
Q ss_pred CChhhcchhhcCcchhhh------HHHHH-HHHhCCHHHHHHHHHHHHhcCCCCC--------------hhhHHHHHHHH
Q 045820 24 PSAAESLDLKENPRSLQA------QRFVD-KIKASPLKERIDIFNSIKKDGTNWS--------------VSDFNDLLMAL 82 (225)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~------~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~~~~~li~~~ 82 (225)
+++++|++.+........ ..+-. +.+.|++++|+..|++..+..-... ...|..+-.+|
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666655332221 11112 3489999999999998876632211 46777777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 045820 83 VMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162 (225)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 162 (225)
.+.|++++|.. .|++..+.. +.+...|..+-.+|.+.|++++|...|++..+..-
T Consensus 207 ~~~g~~~~A~~----------------~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-------- 261 (336)
T 1p5q_A 207 LKLQAFSAAIE----------------SCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-------- 261 (336)
T ss_dssp HHTTCHHHHHH----------------HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--------
T ss_pred HHcCCHHHHHH----------------HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------
Confidence 66665555544 444444421 23678899999999999999999999999987642
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHH-HHHHHHHH
Q 045820 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA-LLLLFLMY 203 (225)
Q Consensus 163 ~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 203 (225)
-+...+..+...+.+.|+.++| ..+++.|.
T Consensus 262 -----------~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 262 -----------NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -----------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888999999999888 45666663
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0002 Score=54.76 Aligned_cols=144 Identities=9% Similarity=-0.064 Sum_probs=82.0
Q ss_pred HHHhCCHHHHHHHHHHHHhcC-CCCChh----hHHHHHHHHHhcCCHHHHHHHHHHH-----------------------
Q 045820 47 KIKASPLKERIDIFNSIKKDG-TNWSVS----DFNDLLMALVMLNEQDTAVKFFSNH----------------------- 98 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g-~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~----------------------- 98 (225)
.+..|++++|..++++..+.. ..|+.. .+..+...+...++++.|...|++.
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 164 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 346666667766666655432 122211 1222334444445555555554443
Q ss_pred -HhcCCHHHHHHHHHHHhh----C-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcC
Q 045820 99 -LMVGRVEEAYEMLMNVKN----D-GLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMG 171 (225)
Q Consensus 99 -~~~g~~~~a~~~~~~m~~----~-g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~ 171 (225)
...|++++|...|++..+ . +..+. ..+|+.+-..|.+.|++++|...+++..+... ..+
T Consensus 165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~--------------~~~ 230 (293)
T 3u3w_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC--------------RIN 230 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------HTT
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------------HcC
Confidence 334555555555555442 1 22222 23677777788888888888888777654311 011
Q ss_pred CCCC-HHHHHHHHHHHHccC-cHHHHHHHHHHHHh
Q 045820 172 HIPR-TITFNNVIQALCGVG-KIHKALLLLFLMYE 204 (225)
Q Consensus 172 ~~p~-~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 204 (225)
..+. ..+|..+-.+|.+.| ++++|.+.+++...
T Consensus 231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 1122 567888889999999 56999998887753
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.6e-05 Score=54.29 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=82.9
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhh----hHHHHHHH---HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQ----AQRFVDKI---KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~l~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+...+.+.|++++|+..+++..... +..+...+ ..+....+...+++..+.. +-+...+..+-..+.
T Consensus 41 ~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~ 119 (176)
T 2r5s_A 41 DVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYN 119 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 445577778889999999999998854332 22221111 2233345677887777652 225677777777785
Q ss_pred hcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 84 MLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
.. |++++|...|.+..+....+ +...+..+...+...|+.++|...|++...
T Consensus 120 ~~----------------g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 120 QV----------------GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HT----------------TCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred Hc----------------ccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 44 55566666666666543322 356888999999999999999999987654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0001 Score=50.99 Aligned_cols=123 Identities=10% Similarity=0.005 Sum_probs=85.5
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA 91 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a 91 (225)
....+.+.+...+.+.+++++-..-...-+..-....+.|++++|...|++..+.. +-+...|..+-.+|.+.|++
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~--- 86 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQF--- 86 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccH---
Confidence 34455555666666666665433222222333333558999999999999998773 33677888888888555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 92 ~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
++|...|++..+. .| +...|..+-.+|.+.|++++|...|++..+..
T Consensus 87 -------------~~Ai~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 87 -------------QQAADLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp -------------HHHHHHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -------------HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4555555555442 34 56788899999999999999999999998864
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00046 Score=52.73 Aligned_cols=143 Identities=10% Similarity=-0.041 Sum_probs=92.1
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCC-h----hhHHHHHHHHHhcCCHHHHHHHHHHH-----------------------
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWS-V----SDFNDLLMALVMLNEQDTAVKFFSNH----------------------- 98 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~-~----~~~~~li~~~~~~~~~~~a~~~~~~~----------------------- 98 (225)
.+..|++++|...+....+..-..+ . ..+..+...+...|++++|...+++.
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 164 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 4578888888888877665422211 1 12333444556667777777766554
Q ss_pred -HhcCCHHHHHHHHHHHhh----CCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcC
Q 045820 99 -LMVGRVEEAYEMLMNVKN----DGLKP--DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMG 171 (225)
Q Consensus 99 -~~~g~~~~a~~~~~~m~~----~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~ 171 (225)
...|++++|...|++..+ .+-.+ ...+|+.+-..|.+.|++++|...+++..+.... .+
T Consensus 165 y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--------------~~ 230 (293)
T 2qfc_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR--------------IN 230 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------TT
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--------------cC
Confidence 456777777777777652 11112 2257788888888888888888888876643110 00
Q ss_pred CCC-CHHHHHHHHHHHHccCcHHHH-HHHHHHHH
Q 045820 172 HIP-RTITFNNVIQALCGVGKIHKA-LLLLFLMY 203 (225)
Q Consensus 172 ~~p-~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 203 (225)
... -..+|..+-..|.+.|+.++| ...+++..
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 011 256788888999999999999 77677654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00052 Score=43.93 Aligned_cols=86 Identities=14% Similarity=0.097 Sum_probs=67.1
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
..|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+..- .+...|
T Consensus 16 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~ 75 (118)
T 1elw_A 16 SVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-------------------DWGKGY 75 (118)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------------------TCHHHH
T ss_pred HcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-------------------ccHHHH
Confidence 3455555555555554432 23677888899999999999999999999887642 356788
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
..+..+|...|++++|.+.+++..+.
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 88999999999999999999998864
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0001 Score=56.40 Aligned_cols=121 Identities=13% Similarity=0.068 Sum_probs=71.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH--HH--------
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--QR-------- 167 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~--~~-------- 167 (225)
...|++++|...|++..+. .| +...+..+...+.+.|++++|...+++.... .|+........ ..
T Consensus 128 ~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~ 203 (287)
T 3qou_A 128 MQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTP 203 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCH
T ss_pred HhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccCc
Confidence 3445555555555555442 23 4455666666666666666666666655433 23322111111 00
Q ss_pred --------hhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHhhcC
Q 045820 168 --------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI-PSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 168 --------~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~ 224 (225)
... -..+...+..+-..|...|++++|...+.+..+..-. .+...+..+...|...
T Consensus 204 a~~~l~~al~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 204 EIQQLQQQVAE-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 011 1245788999999999999999999999999975321 1256677777766543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00019 Score=45.60 Aligned_cols=102 Identities=10% Similarity=-0.044 Sum_probs=75.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
+...|..+-..+.+.|++++ |...|++..+.. +.+...|..+-..+.+.|++++|...+++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~----------------A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTE----------------SIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHH----------------HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHH----------------HHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34556666667755555554 455555444322 2366788889999999999999999999998
Q ss_pred HcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc-CcHHHHHHHHHHHHhcC
Q 045820 151 ERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV-GKIHKALLLLFLMYEHG 206 (225)
Q Consensus 151 ~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g 206 (225)
+..-. ..+...|..+...+... |++++|.+.++...+..
T Consensus 68 ~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 68 NVIED-----------------EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTSCC-----------------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HhCcc-----------------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 76420 01578899999999999 99999999999998753
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.7e-05 Score=67.08 Aligned_cols=130 Identities=13% Similarity=0.138 Sum_probs=102.2
Q ss_pred CCCCChhhcchhhcCcc-----------hhhhHHHH----HHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 21 SRSPSAAESLDLKENPR-----------SLQAQRFV----DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 21 ~~~~~~~~a~~~~~~~~-----------~~~~~~l~----~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
...|++++|++.+++.. ........ .....|++++|+..|++..+.. +-+...|..+-.++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 77899999998877643 12222222 2348899999999999988763 33677899999999999
Q ss_pred CCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 86 NEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 86 ~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
|++++|...|++. .+.|++++ .+.|++..+.. +-+...|..+-.+|.+.|++++|...|+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999887 56788888 88888877642 2366789999999999999999999999
Q ss_pred HHHHcC
Q 045820 148 EAIERG 153 (225)
Q Consensus 148 ~m~~~g 153 (225)
+..+..
T Consensus 559 ~al~l~ 564 (681)
T 2pzi_A 559 EVPPTS 564 (681)
T ss_dssp TSCTTS
T ss_pred hhcccC
Confidence 877643
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00078 Score=45.17 Aligned_cols=100 Identities=16% Similarity=0.079 Sum_probs=74.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPD----VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p 174 (225)
...|++++|...|++..+. .|+ ...|..+-..|.+.|++++|...+++..+..- .
T Consensus 39 ~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------------------~ 97 (148)
T 2dba_A 39 FKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-------------------G 97 (148)
T ss_dssp HTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-------------------C
T ss_pred HHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-------------------c
Confidence 3445556666666666553 455 67788889999999999999999999887632 3
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHh
Q 045820 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS-RTSHDMLIKKL 221 (225)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~ 221 (225)
+...|..+..+|...|++++|...|++..+. .|+ ...+..+-...
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRNIS 143 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHH
Confidence 5678888889999999999999999999874 344 44554444443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0011 Score=53.92 Aligned_cols=169 Identities=12% Similarity=-0.005 Sum_probs=113.8
Q ss_pred HhCCHHHHHHHHHHHHhc--------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------------------
Q 045820 49 KASPLKERIDIFNSIKKD--------GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------------------- 98 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~--------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---------------------- 98 (225)
..|+.++|++.|++-.+. ...-...+|+.+-.+|...|++++|...+++.
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 789999999999764321 12334678999999999999999999888765
Q ss_pred ------HhcCCHHHHHHHHHHHhhCCCCCC-HHhHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH---
Q 045820 99 ------LMVGRVEEAYEMLMNVKNDGLKPD-VYTYTAIMDG---FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165 (225)
Q Consensus 99 ------~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~---~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~--- 165 (225)
...+++++|...|++..+. .|+ ...+..+..+ +...++.++|+..+++..+.... +..++..+-
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~ 219 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHH
Confidence 1235789999999998763 453 3444444333 45667888899999888765422 233332221
Q ss_pred --------------HHhh---cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 166 --------------QRLE---MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 166 --------------~~~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
..++ .-...+...+..+...|...|++++|...+++..+.. +-+..++..+-..|
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCY 291 (472)
T ss_dssp HHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 1111 1123456778889999999999999999999998753 22344555444433
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00035 Score=55.04 Aligned_cols=143 Identities=13% Similarity=0.024 Sum_probs=90.1
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHH------------------------Hh
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVS----DFNDLLMALVMLNEQDTAVKFFSNH------------------------LM 100 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~------------------------~~ 100 (225)
..|++++|...+++..+..-..+.. +++.+-..+...|+++.|...+++. ..
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 5566666666666654432111111 3344445555566666666655443 34
Q ss_pred cCCHHHHHHHHHHHhh----CCCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCC
Q 045820 101 VGRVEEAYEMLMNVKN----DGLK--P-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~----~g~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~ 173 (225)
.|++++|...+++..+ .+.. | ....+..+-..+...|++++|...+++........ +..
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~ 171 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY--------------QPQ 171 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS--------------CGG
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc--------------CcH
Confidence 5677777777666543 2222 3 23456777888999999999999999887653221 000
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
....+|..+...+...|++++|...+++..+.
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12356777888899999999999999998753
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.8e-05 Score=51.91 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=78.1
Q ss_pred hcCCHHHHHHHHHHHhhCCC-CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGL-KP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
..|++++|...|++..+.+. .| +...|..+-..|.+.|++++|...|++..+..- -+..
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~ 62 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-------------------NHQA 62 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CchH
Confidence 35778888888888877431 13 456788999999999999999999999988653 3567
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhc
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEH-GKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~ 223 (225)
.+..+..++...|++++|...+++..+. .-.|+...|...+..|.+
T Consensus 63 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 8888999999999999999999998864 334455556555655543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00026 Score=50.77 Aligned_cols=155 Identities=13% Similarity=-0.040 Sum_probs=87.5
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhhhHH------HH-HHHHhCCHHHHHHHHHHHHhcCC-CCC--------------h
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQAQR------FV-DKIKASPLKERIDIFNSIKKDGT-NWS--------------V 72 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------l~-~~~~~~~~~~a~~~~~~m~~~g~-~~~--------------~ 72 (225)
.......-.|.++++.+.+.......... +- ..++.|++++|+..|++..+..- .|+ .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 34455666778888888887654332221 11 23489999999999998876421 111 1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 73 SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 73 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..|..+-.+|.+.|++ ++|...+++..+.. +.+...|..+-.+|.+.|++++|...|++..+.
T Consensus 89 ~~~~~la~~~~~~~~~----------------~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDY----------------PKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTTCH----------------HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCH----------------HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 5566666666555554 55555555544421 336778889999999999999999999998876
Q ss_pred CCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHH-HHHHHHHhc
Q 045820 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL-LLLFLMYEH 205 (225)
Q Consensus 153 g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~ 205 (225)
.- -+...+..+..++...++.+++. ..+..|...
T Consensus 152 ~p-------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NP-------------------NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp ST-------------------TCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 42 34567777777777777777666 555555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00055 Score=44.24 Aligned_cols=89 Identities=16% Similarity=0.231 Sum_probs=67.7
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|...|++..+.. +.+..+|..+...+.+.|++++|..+|+. +.+.. +.+..++
T Consensus 19 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~----------------~~~~~-~~~~~~~ 80 (125)
T 1na0_A 19 YYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQK----------------ALELD-PNNAEAW 80 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------HHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHH----------------HHHhC-CccHHHH
Confidence 348899999999999987763 34677788888888666666555555544 43321 3467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+...|.+.|++++|...++++.+..
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 999999999999999999999988764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00028 Score=46.19 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=73.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC----
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR---- 175 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~---- 175 (225)
..|++++|...|.+..+.. +.+...+..+...|.+.|++++|...+++..+.... ..++
T Consensus 16 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~ 78 (131)
T 1elr_A 16 KKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE----------------NREDYRQI 78 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------------STTCHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc----------------cchhHHHH
Confidence 3445555555555554432 336778889999999999999999999998765310 0022
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 045820 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220 (225)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 220 (225)
...|..+...|...|++++|.+.|++..+.. |+......+-..
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 6678888999999999999999999998753 566555555443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00028 Score=59.20 Aligned_cols=125 Identities=10% Similarity=0.007 Sum_probs=87.6
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+-..+.+.|++++|.+.+++.... .+..+-. ....|++++|...|++..+.. +-+...|..+-.++.
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 102 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALE 102 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45557777888999999999988773221 1222222 338899999999999987763 335677888888886
Q ss_pred hcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 045820 84 MLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV---GRSNEAMELLNEAIERG 153 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~m~~~g 153 (225)
+.|++++|.+.|++ ..+.. +-+...+..+...+.+. |++++|...+++..+.+
T Consensus 103 ~~g~~~~A~~~~~~----------------al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 103 DAGQAEAAAAAYTR----------------AHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HTTCHHHHHHHHHH----------------HHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHH----------------HHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 66666655555544 33321 22566788888888888 88888988888887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00082 Score=48.87 Aligned_cols=142 Identities=9% Similarity=-0.055 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH---------------hcC----CHHHHHHHHHHHh
Q 045820 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL---------------MVG----RVEEAYEMLMNVK 115 (225)
Q Consensus 55 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---------------~~g----~~~~a~~~~~~m~ 115 (225)
+|+..|+...+.| ++..+..+=..|...+++++|...|+..+ ..+ +.++|.++|.+..
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAV 80 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 4667777776665 67778888888888999999999998771 124 7888998888887
Q ss_pred hCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc---
Q 045820 116 NDGLKPDVYTYTAIMDGFCK----VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG--- 188 (225)
Q Consensus 116 ~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~--- 188 (225)
+.| +...+..+-..|.. .+++++|...|++..+.|... .+...+..|-..|..
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~-----------------~~~~a~~~Lg~~y~~g~g 140 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD-----------------AAVDAQMLLGLIYASGVH 140 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH-----------------HHHHHHHHHHHHHHHTSS
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc-----------------chHHHHHHHHHHHHcCCC
Confidence 654 55667777777776 788999999999888766310 015666667777776
Q ss_pred -cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 189 -VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 189 -~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
.++.++|..+|++..+.+ .+...+..|-..|
T Consensus 141 ~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 141 GPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMF 172 (212)
T ss_dssp SSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 778999999999988762 2333444444444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00048 Score=45.79 Aligned_cols=100 Identities=14% Similarity=0.000 Sum_probs=75.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 70 WSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 70 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
.+...|..+-..+.+.|+++ +|...|.+..+.. +.+...|..+-..|.+.|++++|...+++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~----------------~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYP----------------EAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRA 69 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHH----------------HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHH----------------HHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 35566777777775555554 5555555444322 235778999999999999999999999999
Q ss_pred HHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 150 ~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
.+..- .+...|..+-.+|...|++++|...|++..+.
T Consensus 70 l~~~p-------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 70 LELDG-------------------QSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCc-------------------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 87642 35678899999999999999999999998753
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00088 Score=52.73 Aligned_cols=193 Identities=11% Similarity=-0.044 Sum_probs=101.8
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcch------------hhhHHHH-HHHHhCCHHHHHHHHHHHHhc----CCC--C-C
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRS------------LQAQRFV-DKIKASPLKERIDIFNSIKKD----GTN--W-S 71 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~~~~l~-~~~~~~~~~~a~~~~~~m~~~----g~~--~-~ 71 (225)
....+-..+...|++++|.+.+.+... .....+- .....|++++|...+++..+. +.. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 555555666667777777766655211 0122222 234677777777777665432 221 2 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHH-----------------------HhcCCHHHHHHHHHHHhhCCCCCC--HHhH
Q 045820 72 VSDFNDLLMALVMLNEQDTAVKFFSNH-----------------------LMVGRVEEAYEMLMNVKNDGLKPD--VYTY 126 (225)
Q Consensus 72 ~~~~~~li~~~~~~~~~~~a~~~~~~~-----------------------~~~g~~~~a~~~~~~m~~~g~~p~--~~~~ 126 (225)
...+..+-..+...|++++|...+++. ...|++++|...+++.......++ ....
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 334555666677777777777766543 445777777777777653211111 1111
Q ss_pred H----HHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHH--------------------HHh-hcCCCCCH-H
Q 045820 127 T----AIMDGFCKVGRSNEAMELLNEAIERGVTQN---VVTLIQLL--------------------QRL-EMGHIPRT-I 177 (225)
Q Consensus 127 ~----~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~l~--------------------~~~-~~~~~p~~-~ 177 (225)
. .....+...|++++|...+.+.......++ ...+..+. ... ..|..++. .
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 1 223346677888888777776654322111 11111111 000 11111222 2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.+..+-..+...|+.++|...+++..+
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555566677778888888887777653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00057 Score=46.77 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=68.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|...|.+..... +.+...|..+-.+|.+.|++++|...|++..+..- -+...
T Consensus 32 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------------------~~~~~ 91 (148)
T 2vgx_A 32 YQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-------------------XEPRF 91 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------TCTHH
T ss_pred HHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------------------CCchH
Confidence 34455566666666655432 33777888999999999999999999999987642 35678
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
|..+-.+|...|++++|...|+...+.
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888999999999999999999998864
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00043 Score=51.77 Aligned_cols=160 Identities=11% Similarity=-0.035 Sum_probs=97.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045820 42 QRFVDKIKASPLKERIDIFNSIKKDGTNWS---VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118 (225)
Q Consensus 42 ~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g 118 (225)
..-...++.|++++|+..|+...+..- -+ ...+..+-.+|.+.|+++.| ...|++..+..
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A----------------~~~~~~~l~~~ 82 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLA----------------ASEYERFIQIY 82 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHH----------------HHHHHHHHHHC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHH----------------HHHHHHHHHHC
Confidence 334445699999999999999987631 12 55667777777555555554 44555544421
Q ss_pred C-CC-CHHhHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCccHHHHHHH--HHHhhcCCCCCHHHHHHHHHHH
Q 045820 119 L-KP-DVYTYTAIMDGFCK--------VGRSNEAMELLNEAIERGVTQNVVTLIQL--LQRLEMGHIPRTITFNNVIQAL 186 (225)
Q Consensus 119 ~-~p-~~~~~~~ll~~~~~--------~g~~~~a~~~~~~m~~~g~~p~~~t~~~l--~~~~~~~~~p~~~~~~~li~~~ 186 (225)
. .| ....+..+-.++.+ .|++++|...|++..+..-. +.....++ +...... ....+..+-..|
T Consensus 83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~---~~~~~~~la~~~ 158 (261)
T 3qky_A 83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAK---LARKQYEAARLY 158 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 1 12 23456677778888 99999999999999875321 00111111 0000000 011235667889
Q ss_pred HccCcHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHhh
Q 045820 187 CGVGKIHKALLLLFLMYEHGKI-P-SRTSHDMLIKKLD 222 (225)
Q Consensus 187 ~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~ll~~~~ 222 (225)
.+.|++++|...|++..+..-. | ....+..+..+|.
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 9999999999999999875311 1 2345555555554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00058 Score=52.18 Aligned_cols=134 Identities=15% Similarity=0.056 Sum_probs=93.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHH------------------------HhcCCHHHHHHHHHHHhhCCCC-CC----HHhHHH
Q 045820 78 LLMALVMLNEQDTAVKFFSNH------------------------LMVGRVEEAYEMLMNVKNDGLK-PD----VYTYTA 128 (225)
Q Consensus 78 li~~~~~~~~~~~a~~~~~~~------------------------~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~ 128 (225)
.+..+...|+++.|..++++. ...|++++|...|.+..+.... ++ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466778888998888888765 3456889999999988763222 23 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc-
Q 045820 129 IMDGFCKVGRSNEAMELLNEAIERG--VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH- 205 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 205 (225)
+-..|...|++++|...|++..+.- ...+. .....+|..+...|.+.|++++|...+++..+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNE--------------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccch--------------hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 8899999999999999998887421 10000 012347889999999999999999999987642
Q ss_pred ---CCCCC-HHHHHHHHHHhhcCC
Q 045820 206 ---GKIPS-RTSHDMLIKKLDQQP 225 (225)
Q Consensus 206 ---g~~p~-~~~~~~ll~~~~~~g 225 (225)
+..+. ..+|..+-.+|.+.|
T Consensus 227 ~~~~~~~~~~~~~~~lg~~~~~~g 250 (293)
T 3u3w_A 227 CRINSMALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp HHTTBCTTHHHHHHHHHHHHHHTT
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhC
Confidence 33333 456666666655443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0007 Score=51.70 Aligned_cols=139 Identities=14% Similarity=0.053 Sum_probs=95.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH------------------------HhcCCHHHHHHHHHHHhhCC---CCCC--HH
Q 045820 74 DFNDLLMALVMLNEQDTAVKFFSNH------------------------LMVGRVEEAYEMLMNVKNDG---LKPD--VY 124 (225)
Q Consensus 74 ~~~~li~~~~~~~~~~~a~~~~~~~------------------------~~~g~~~~a~~~~~~m~~~g---~~p~--~~ 124 (225)
.+...+..+...|++++|.+.+.+. ...|++++|...|.+..+.. ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445667778888888888877543 45679999999998876421 1122 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
+|+.+-..|...|++++|...+++..+.. ..|+.. .....+|..+...|.+.|++++|...+++..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~-------------~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE-------------EFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc-------------cchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 78899999999999999999999887321 110000 0123588899999999999999999999886
Q ss_pred hc----CCCCC-HHHHHHHHHHhhcCC
Q 045820 204 EH----GKIPS-RTSHDMLIKKLDQQP 225 (225)
Q Consensus 204 ~~----g~~p~-~~~~~~ll~~~~~~g 225 (225)
+. +.... ..+|..+-..|.+.|
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g 250 (293)
T 2qfc_A 224 EISCRINSMALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp HHHHHTTBCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 43 21111 456666666665543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00023 Score=48.19 Aligned_cols=87 Identities=8% Similarity=0.014 Sum_probs=69.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|...|.+..... +.+...|..+-.+|.+.|++++|...|++..+..- -+...
T Consensus 29 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~~ 88 (142)
T 2xcb_A 29 YQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-------------------NEPRF 88 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCTHH
T ss_pred HHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------------------CCcHH
Confidence 34566666666776665532 23677888999999999999999999999988642 45677
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
|..+-.+|...|++++|...|+...+.
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888899999999999999999998764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00079 Score=48.42 Aligned_cols=84 Identities=13% Similarity=0.014 Sum_probs=71.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|...|.+.. .|+...|..+-..|.+.|++++|...+++..+..- .+...
T Consensus 17 ~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------------------~~~~~ 73 (213)
T 1hh8_A 17 ADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-------------------HLAVA 73 (213)
T ss_dssp HHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHH
T ss_pred HHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------------------cchHH
Confidence 45677778887777663 56888999999999999999999999999887642 46678
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
|..+-.+|...|++++|...|++..+.
T Consensus 74 ~~~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 74 YFQRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 999999999999999999999999874
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00049 Score=45.28 Aligned_cols=87 Identities=17% Similarity=0.084 Sum_probs=70.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|...|++..+.. +.+...|..+-.+|.+.|++++|...+++..+..- -+...
T Consensus 15 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~ 74 (126)
T 3upv_A 15 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-------------------NFVRA 74 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------------CcHHH
Confidence 44566666666666665532 23678899999999999999999999999987642 35778
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
|..+-.++...|++++|...|++..+.
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 889999999999999999999998764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0002 Score=55.23 Aligned_cols=91 Identities=12% Similarity=-0.001 Sum_probs=58.9
Q ss_pred HhcCCHHHHHHHHHHHhh----CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCC
Q 045820 99 LMVGRVEEAYEMLMNVKN----DGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~ 173 (225)
...|++++|...|++..+ .|-.. -..+++.+-..|.+ |++++|...|++..+.... .+..
T Consensus 87 ~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~--------------~~~~ 151 (307)
T 2ifu_A 87 KDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFEN--------------EERL 151 (307)
T ss_dssp HHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH--------------TTCH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh--------------CCCh
Confidence 345777777777766432 12111 13456667777766 8888888777776543110 0000
Q ss_pred -CCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 174 -PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 174 -p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
....+++.+-..|.+.|++++|+..|++..+
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1145788889999999999999999999876
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00017 Score=52.93 Aligned_cols=140 Identities=8% Similarity=-0.012 Sum_probs=96.0
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchh----h-----hHHHH-HHHHhCCHHHHHHHHHHHHhcCCC-CCh-hhHHHHH
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSL----Q-----AQRFV-DKIKASPLKERIDIFNSIKKDGTN-WSV-SDFNDLL 79 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-----~~~l~-~~~~~~~~~~a~~~~~~m~~~g~~-~~~-~~~~~li 79 (225)
....+...+.+.|++++|+..+.+.... . +..+. ...+.|++++|+..|++..+..-. +.. ..+-.+-
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 3444556677889999999888774321 1 11111 233889999999999888765321 111 1233333
Q ss_pred HHHHh------------------cCCHHHHHHHHHHH-----------------------------------HhcCCHHH
Q 045820 80 MALVM------------------LNEQDTAVKFFSNH-----------------------------------LMVGRVEE 106 (225)
Q Consensus 80 ~~~~~------------------~~~~~~a~~~~~~~-----------------------------------~~~g~~~~ 106 (225)
.++.+ .|+.++|...|+.+ .+.|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 33332 56788888888766 35689999
Q ss_pred HHHHHHHHhhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 107 AYEMLMNVKNDGLKPD----VYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 107 a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
|...|+++.+. .|+ ...+..+..+|.+.|+.++|...++.+...+
T Consensus 166 A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 166 VVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 99999998864 233 2568889999999999999999999988765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0011 Score=45.82 Aligned_cols=86 Identities=9% Similarity=-0.030 Sum_probs=67.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
..|++++|...|++..+.. +-+...|..+-.+|.+.|++++|...|++..+..- -+...|
T Consensus 23 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~~~ 82 (164)
T 3sz7_A 23 ARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-------------------KYSKAW 82 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------------------CCHHHH
Confidence 4445555555555554421 23677899999999999999999999999987642 357788
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
..+-.+|...|++++|...|++..+.
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999998864
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00092 Score=43.52 Aligned_cols=89 Identities=12% Similarity=0.093 Sum_probs=66.7
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|...|++..+.. +.+...|..+...+...|++++|...++ +..+.. +.+...+
T Consensus 22 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~----------------~~~~~~-~~~~~~~ 83 (131)
T 2vyi_A 22 QMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCE----------------RAICID-PAYSKAY 83 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH----------------HHHHHC-TTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHH----------------HHHhcC-ccCHHHH
Confidence 348899999999999887663 3367778888888866666655555544 443321 2357788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+...|.+.|++++|...|++..+..
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 889999999999999999999988764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.003 Score=50.60 Aligned_cols=147 Identities=7% Similarity=0.012 Sum_probs=104.6
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCC----------------hhhHHHHHHHHHhcCCHHHHHHHHHHH----------
Q 045820 45 VDKIKASPLKERIDIFNSIKKDGTNWS----------------VSDFNDLLMALVMLNEQDTAVKFFSNH---------- 98 (225)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~~---------- 98 (225)
-...+.|++++|++.|....+..-..+ ...+..+...|.+.|++++|.+.+...
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345678888888888887765422111 123667888888888888888877655
Q ss_pred --------------HhcCCHHHHHHHHHHHhh----CCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 045820 99 --------------LMVGRVEEAYEMLMNVKN----DGLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159 (225)
Q Consensus 99 --------------~~~g~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 159 (225)
...|+.+.|..++.+... .+..+. ..++..+...|...|++++|..++.+....-...+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~-- 169 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD-- 169 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS--
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc--
Confidence 235778888888777543 333333 45788899999999999999999998765321100
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 160 t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.......+|..++..|...|++++|..+++....
T Consensus 170 -----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 170 -----------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp -----------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 0012356889999999999999999999988764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00015 Score=59.95 Aligned_cols=131 Identities=9% Similarity=0.008 Sum_probs=96.7
Q ss_pred HhCCHHHHHHHHHHHHhc---CC---CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 045820 49 KASPLKERIDIFNSIKKD---GT---NW-SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP 121 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~---g~---~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p 121 (225)
..|++++|..++++..+. -+ .| ...+++.|..+|...|++++|..++++ |++++.+..... .|
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~---------aL~i~~~~lG~~-Hp 390 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR---------MVDGYMKLYHHN-NA 390 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---------HHHHHHHHSCTT-CH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH---------HHHHHHHHcCCC-CH
Confidence 679999999999876432 11 22 356799999999999999999887764 466666555332 35
Q ss_pred CH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCccHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHccCcHHHHH
Q 045820 122 DV-YTYTAIMDGFCKVGRSNEAMELLNEAIER---GVTQNVVTLIQLLQRLEMGHIPR-TITFNNVIQALCGVGKIHKAL 196 (225)
Q Consensus 122 ~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~l~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~ 196 (225)
++ .+++.+-..|...|++++|+.++++..+. -+.|+ +|+ ..+.+.+-.++...+.+++|+
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~---------------Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS---------------HPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---------------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC---------------ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 56999999999999999999999887542 11111 233 345566778888899999999
Q ss_pred HHHHHHHh
Q 045820 197 LLLFLMYE 204 (225)
Q Consensus 197 ~~~~~m~~ 204 (225)
.+++.+++
T Consensus 456 ~~~~~~~~ 463 (490)
T 3n71_A 456 FMYHKMRE 463 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999976
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0015 Score=42.82 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=66.2
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|...|++..+.. +.+...|..+-..+...|++++|.. .|++..+.. +.+...+
T Consensus 26 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~----------------~~~~a~~~~-~~~~~~~ 87 (133)
T 2lni_A 26 CFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALK----------------DCEECIQLE-PTFIKGY 87 (133)
T ss_dssp HHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHH----------------HHHHHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHH----------------HHHHHHHhC-CCchHHH
Confidence 448999999999999987663 3367778888888855555555544 444444321 2367788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+-..|.+.|++++|...|++..+..
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 899999999999999999999988753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00022 Score=48.99 Aligned_cols=102 Identities=9% Similarity=-0.102 Sum_probs=80.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
..|++++|...+...... .| +...+-.+-..|.+.|++++|...|++..+..- -+...
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-------------------~~~~a 67 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-------------------RDPKA 67 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CCHHH
Confidence 346778888887776542 34 344566788899999999999999999988642 46788
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhcC
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIP-SRTSHDMLIKKLDQQ 224 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 224 (225)
|..+-.+|.+.|++++|...|++..+. .| +...|..+-..|.+.
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999874 34 466777777766654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0008 Score=48.72 Aligned_cols=73 Identities=10% Similarity=0.051 Sum_probs=58.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCC
Q 045820 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 208 (225)
+-.+|.+.|++++|...|++..+..- -+...|..+-..|...|++++|...|++..+.. +
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P 119 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-------------------NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-A 119 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 88899999999999999999988642 367788889999999999999999999998743 2
Q ss_pred CCHHHHHHHHHHh
Q 045820 209 PSRTSHDMLIKKL 221 (225)
Q Consensus 209 p~~~~~~~ll~~~ 221 (225)
-+...+..+-..|
T Consensus 120 ~~~~a~~~lg~~~ 132 (208)
T 3urz_A 120 DNLAANIFLGNYY 132 (208)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 2455565555444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00084 Score=44.05 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=67.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC-H---HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPD-V---YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p 174 (225)
...|++++|...|++..+.. |+ . ..+..+-.+|.+.|++++|...|++..+..-. . ..
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~--~--------------~~ 74 (129)
T 2xev_A 13 LKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT--H--------------DK 74 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--S--------------TT
T ss_pred HHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC--C--------------cc
Confidence 34577777777777776532 32 2 46777888999999999999999999876421 0 00
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
....+..+..+|...|++++|...|++..+.
T Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0566778889999999999999999999875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0012 Score=45.26 Aligned_cols=120 Identities=6% Similarity=-0.090 Sum_probs=78.1
Q ss_pred hHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 045820 14 VLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 86 (225)
..+...+...|++++|...+.+..... +..+.. ....|++++|...|++..+.. +.+...|..+-.++...|
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 355667888999999998887632221 112222 338899999999999887763 335677877777886666
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY--TAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
++++|... |++..+.. +.+...+ -.....+.+.|++++|...+.+...
T Consensus 96 ~~~~A~~~----------------~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 96 KFRAALRD----------------YETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp CHHHHHHH----------------HHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH----------------HHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 55555544 44444321 1233344 3344447788999999999887653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00035 Score=46.07 Aligned_cols=86 Identities=14% Similarity=0.020 Sum_probs=69.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
.+.|++++|...|++..+. .| +...|..+-.++.+.|++++|...|++..+..- -+..
T Consensus 28 ~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-------------------~~~~ 86 (121)
T 1hxi_A 28 LKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-------------------KDIA 86 (121)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHH
T ss_pred HHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CCHH
Confidence 3456667777777776653 34 677888999999999999999999999988642 3567
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
.|..+..+|...|++++|...+++..+.
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888999999999999999999998763
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00047 Score=45.83 Aligned_cols=101 Identities=10% Similarity=0.053 Sum_probs=72.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CccHHHHHHHHHHhhcCCCCC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV--TQNVVTLIQLLQRLEMGHIPR 175 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~l~~~~~~~~~p~ 175 (225)
.+.|++++|...|++..+. .| +...|+.+-.+|.+.|++++|...+++..+..- .++.. --
T Consensus 19 ~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------------~~ 82 (127)
T 4gcn_A 19 YKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK--------------LI 82 (127)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------------HH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH--------------HH
Confidence 4556666677777666553 34 677899999999999999999999999876421 10000 00
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 045820 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217 (225)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 217 (225)
..+|..+-.++...|++++|++.|++..+. .||..+...|
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 246777778889999999999999998764 4676665544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00075 Score=45.59 Aligned_cols=88 Identities=11% Similarity=-0.013 Sum_probs=65.8
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
.++.|++++|...|+...+.. +-+...|..+-.++.+.|+++. |...|++..+.. +-+...|
T Consensus 28 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~----------------A~~~~~~al~~~-p~~~~~~ 89 (142)
T 2xcb_A 28 QYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQ----------------ALQSYSYGALMD-INEPRFP 89 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH----------------HHHHHHHHHHHC-TTCTHHH
T ss_pred HHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHH----------------HHHHHHHHHhcC-CCCcHHH
Confidence 458999999999999988763 3367778888888866555555 455555444422 2356678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..+-.+|...|++++|...|++..+.
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88899999999999999999998765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.002 Score=42.68 Aligned_cols=89 Identities=11% Similarity=0.048 Sum_probs=68.6
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
.++.|++++|+..|++..+.. +-+...|..+-.+|.+.|++++|...|+ +..+.. +.+...|
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~----------------~al~~~-p~~~~a~ 84 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCD----------------TCIRLD-SKFIKGY 84 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH----------------HHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHH----------------HHHHhh-hhhhHHH
Confidence 458999999999999987763 4477888888888866666655555444 443321 3367789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+-.+|.+.|++++|...|++..+..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999988753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0011 Score=45.27 Aligned_cols=88 Identities=13% Similarity=0.015 Sum_probs=66.0
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
..+.|++++|...|+...+.. +.+...|..+-.+|...|++++| ...|++..... +-+...|
T Consensus 31 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A----------------~~~~~~al~l~-p~~~~~~ 92 (148)
T 2vgx_A 31 QYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLA----------------IHSYSYGAVMD-IXEPRFP 92 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH----------------HHHHHHHHHHS-TTCTHHH
T ss_pred HHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHH----------------HHHHHHHHhcC-CCCchHH
Confidence 458999999999999987763 33777788888888665555554 44554444321 2356778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..+-.+|...|++++|...|++..+.
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999999999998764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00082 Score=45.48 Aligned_cols=131 Identities=9% Similarity=0.094 Sum_probs=88.5
Q ss_pred HHhCCHHHHHHHHHHHHhcCC---CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-
Q 045820 48 IKASPLKERIDIFNSIKKDGT---NW--SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP- 121 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~g~---~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p- 121 (225)
...|++++|...+++..+..- .+ -..++..+-..+...|++++|...+++. .+++... +-.+
T Consensus 20 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---------~~~~~~~---~~~~~ 87 (164)
T 3ro3_A 20 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT---------LLLARQL---KDRAV 87 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------HHHHHHT---TCHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH---------HHHHHHh---CCcHH
Confidence 378999999999987654311 11 1146777777787777777777766543 2222221 1112
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
....+..+-..+...|++++|...+++..+.... .+. ......+..+...|...|++++|.+.++
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR--------------IGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch--------------HhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 2456788889999999999999999887653211 000 0123567788889999999999999999
Q ss_pred HHHh
Q 045820 201 LMYE 204 (225)
Q Consensus 201 ~m~~ 204 (225)
+..+
T Consensus 154 ~a~~ 157 (164)
T 3ro3_A 154 KHLE 157 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00051 Score=48.90 Aligned_cols=130 Identities=7% Similarity=-0.096 Sum_probs=84.3
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh------h------hHHHHH-HHHhCCHHHHHHHHHHHHhc----CCCC--C
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL------Q------AQRFVD-KIKASPLKERIDIFNSIKKD----GTNW--S 71 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~------~~~l~~-~~~~~~~~~a~~~~~~m~~~----g~~~--~ 71 (225)
..+..+-..+...|++++|+..+.+.... . +..+-. ....|++++|...+++..+. +-.+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 34446677788899999999888774331 1 111111 23889999999999876543 2122 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 72 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
...+..+-..+...|++++|...+++. .++.. ..+... -..++..+-..+.+.|++++|...+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~a---------l~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKS---------LVYAQ---QADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH---------HHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH---------HHHHH---hccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345677777787777777777766543 22221 222111 23457888889999999999999998876
Q ss_pred Hc
Q 045820 151 ER 152 (225)
Q Consensus 151 ~~ 152 (225)
+.
T Consensus 175 ~~ 176 (203)
T 3gw4_A 175 DI 176 (203)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.001 Score=57.15 Aligned_cols=154 Identities=13% Similarity=0.088 Sum_probs=92.0
Q ss_pred HhCCHHHHHHHHHHHHhcC---------CCCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHH---------
Q 045820 49 KASPLKERIDIFNSIKKDG---------TNWS------------VSDFNDLLMALVMLNEQDTAVKFFSNH--------- 98 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g---------~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~~--------- 98 (225)
+.|++++|..+|+...+.. ..|+ ..+|...+....+.|+.+.|..+|...
T Consensus 390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~ 469 (679)
T 4e6h_A 390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP 469 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh
Confidence 5677777777777665431 0121 235666666666666666666666554
Q ss_pred ----------Hh-cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 045820 99 ----------LM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167 (225)
Q Consensus 99 ----------~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~ 167 (225)
.+ .++.+.|.++|+...+. .+-+...|...+.-....|+.+.|..+|++..+....+
T Consensus 470 ~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~----------- 537 (679)
T 4e6h_A 470 DIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS----------- 537 (679)
T ss_dssp HHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST-----------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH-----------
Confidence 11 13356666666665543 22244445555665566666666666666655433210
Q ss_pred hhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 168 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
.-....|...+.--.+.|+.+.+.++.+.+.+. .|+......+++-|
T Consensus 538 -----~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 538 -----HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp -----THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 013467888888888899999999999999875 35555555555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0018 Score=50.61 Aligned_cols=80 Identities=13% Similarity=-0.012 Sum_probs=65.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
...|..+-.+|.+.|++++|...+++..+..- .+...|..+-.+|...|++++|...|++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 256 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDS-------------------NNEKGLSRRGEAHLAVNDFELARADFQKV 256 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 57899999999999999999999999988642 46788999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHhh
Q 045820 203 YEHGKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 203 ~~~g~~p~~~~~~~ll~~~~ 222 (225)
.+.. +-+...+..+-.++.
T Consensus 257 l~l~-P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 257 LQLY-PNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHC-SSCHHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHH
Confidence 8742 224455655555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0031 Score=44.99 Aligned_cols=78 Identities=8% Similarity=-0.055 Sum_probs=61.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
..|..+-.+|.+.|++++|...+++..+..- .+...|..+-.+|...|++++|...|++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-------------------NNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-------------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 6788889999999999999999999987632 467788889999999999999999999988
Q ss_pred hcCCCCCHHHHHHHHHHh
Q 045820 204 EHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 204 ~~g~~p~~~~~~~ll~~~ 221 (225)
+.. +-+...+..+-.++
T Consensus 150 ~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 150 SLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHS-TTCHHHHHHHHHHH
T ss_pred HHC-CCcHHHHHHHHHHH
Confidence 642 12344555544443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00085 Score=55.27 Aligned_cols=115 Identities=9% Similarity=-0.022 Sum_probs=79.2
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 128 (225)
+.|++++|...|++..+.. +-+..+|..+-.+|.+.|++++|... +++..+.. +-+..+|..
T Consensus 18 ~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~----------------~~~al~l~-p~~~~~~~~ 79 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGD----------------ATRAIELD-KKYIKGYYR 79 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH----------------HHHHHHSC-TTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHH----------------HHHHHHhC-CCCHHHHHH
Confidence 5788999999998887662 33577888888888666665555554 44444431 236778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHH--HHccCcHHHHHHHHH
Q 045820 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQA--LCGVGKIHKALLLLF 200 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 200 (225)
+-.+|.+.|++++|...|++..+..- -+...+..+-.+ +.+.|++++|.+.++
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~p-------------------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVKP-------------------HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-------------------TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999887532 123344444444 777899999998887
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.011 Score=40.55 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---------CC-CHHhHHHHHHHHHhcCCHHHH
Q 045820 73 SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL---------KP-DVYTYTAIMDGFCKVGRSNEA 142 (225)
Q Consensus 73 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~---------~p-~~~~~~~ll~~~~~~g~~~~a 142 (225)
..+...-..+.+.|+++.|...|... +.++.......- .| +...|..+-.+|.+.|++++|
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~a---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A 82 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDA---------LTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEA 82 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH---------HHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH---------HHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 34555556666667776666665543 222222211111 12 346788899999999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHH
Q 045820 143 MELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212 (225)
Q Consensus 143 ~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 212 (225)
...+++..+..- .+...|..+-.+|...|++++|...|+...+. .|+..
T Consensus 83 ~~~~~~al~~~p-------------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 83 EETSSEVLKREE-------------------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHHHHHHST-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHhcCC-------------------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 999999988642 46778999999999999999999999998874 46544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0045 Score=40.47 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=67.4
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
.++.|++++|+..|++..+.. +.+...|..+-.++.+.|++++|...| ++..+.. +-+...|
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~----------------~~al~~~-p~~~~~~ 75 (126)
T 3upv_A 14 YFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADC----------------NKAIEKD-PNFVRAY 75 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHC-TTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHH----------------HHHHHhC-CCcHHHH
Confidence 458999999999999887763 336778888888886666665555544 4444321 2357788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+-.++...|++++|...|++..+..
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 999999999999999999999987653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0037 Score=47.66 Aligned_cols=55 Identities=13% Similarity=-0.035 Sum_probs=40.7
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPD--VYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
...|++++|+..|++.......|. .......-.++.+.|+.++|..+|+++....
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 566777888888887764333253 3355666778899999999999999999864
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0029 Score=41.10 Aligned_cols=92 Identities=9% Similarity=0.196 Sum_probs=68.1
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD---- 122 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~---- 122 (225)
....|++++|...|++..+.. +.+...|..+-..+...|+++.|...++.... +. ... .++
T Consensus 14 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---------~~---~~~--~~~~~~~ 78 (131)
T 1elr_A 14 AYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE---------VG---REN--REDYRQI 78 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------HH---HHS--TTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh---------hc---ccc--chhHHHH
Confidence 348899999999999987763 44677788888888777777777666655411 10 110 122
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+|..+...|.+.|++++|...|++..+..
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 6678888999999999999999999998854
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0057 Score=39.90 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=63.5
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 045820 45 VDKIKASPLKERIDIFNSIKKDGTNWSV---SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP 121 (225)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p 121 (225)
...+..|++++|...|+...+..-. +. ..+..+-.++.+.|++ ++|...|++..+. .|
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~----------------~~A~~~~~~~~~~--~p 70 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNF----------------QLAEAQFRDLVSR--YP 70 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCH----------------HHHHHHHHHHHHH--CT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccH----------------HHHHHHHHHHHHH--CC
Confidence 3456899999999999998876321 22 3566666677555555 5555555555442 23
Q ss_pred C----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 122 D----VYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 122 ~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
+ ...+..+-.+|.+.|++++|...|++..+..
T Consensus 71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2 5567788889999999999999999998754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0036 Score=38.03 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=66.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
+...|..+-..+.+.|++++|...+++..+..- .+...|..+-..|.+.|++++|...+++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------------------NNAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-------------------CCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 456788888899999999999999999887642 3567888889999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 202 MYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 202 m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
..+.. +-+...+..+-..+.+.|
T Consensus 69 a~~~~-p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 69 ALELD-PNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHC
T ss_pred HHhcC-CCCHHHHHHHHHHHHhcC
Confidence 98753 235666776666665544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0011 Score=46.41 Aligned_cols=105 Identities=6% Similarity=-0.022 Sum_probs=76.5
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
..|++++|...+.+..+.. +.+...|..+-..|...|++++|...|++..+..- .+...|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~ 81 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-------------------ENAELY 81 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-------------------SCHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------CCHHHH
Confidence 4567777777877766532 34678899999999999999999999999887542 356677
Q ss_pred HHHHHH-HHccCcH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 180 NNVIQA-LCGVGKI--HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 180 ~~li~~-~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
..+... |...|++ ++|...+++..+.. +-+...+..+-..|.+.|
T Consensus 82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 129 (177)
T 2e2e_A 82 AALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQA 129 (177)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcc
Confidence 777777 7788998 99999999998753 224566766766666544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0051 Score=50.26 Aligned_cols=120 Identities=10% Similarity=-0.042 Sum_probs=82.6
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWS--------------VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~ 112 (225)
+++.|++++|+..|++..+..-.-. ...|..+-.+|.+.|+++ +|...|+
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~----------------~A~~~~~ 341 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT----------------KAVECCD 341 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH----------------HHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHH----------------HHHHHHH
Confidence 3489999999999998876421111 466777777775555554 5555555
Q ss_pred HHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcH
Q 045820 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKI 192 (225)
Q Consensus 113 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~ 192 (225)
+..+.. +-+...|..+-.+|.+.|++++|...|++..+..- -+...+..+-..+.+.++.
T Consensus 342 ~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-------------------~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 342 KALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-------------------QNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------------------CHHHHHHHHHHHHHHH
T ss_pred HHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHHHHH
Confidence 544421 23677899999999999999999999999887532 3456777788888888888
Q ss_pred HHHH-HHHHHH
Q 045820 193 HKAL-LLLFLM 202 (225)
Q Consensus 193 ~~a~-~~~~~m 202 (225)
+++. .+++.|
T Consensus 402 ~~a~~~~~~~~ 412 (457)
T 1kt0_A 402 NERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 7765 345544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0072 Score=41.57 Aligned_cols=89 Identities=9% Similarity=-0.004 Sum_probs=67.3
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
.++.|++++|+..|++..+.. +-+...|..+-.+|.+.|++++|...| ++..+.. +-+...|
T Consensus 21 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~----------------~~al~~~-p~~~~~~ 82 (164)
T 3sz7_A 21 AMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDA----------------ELATVVD-PKYSKAW 82 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHH----------------HHHHHhC-CCCHHHH
Confidence 448999999999999987763 336777888888886666655555544 4444321 2357789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+-.+|.+.|++++|...|++..+..
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999988653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0064 Score=46.34 Aligned_cols=120 Identities=13% Similarity=-0.040 Sum_probs=79.5
Q ss_pred HHHHHhcCCHHHHHHHHHHH-----------------HhcCCHHHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHhcCCH
Q 045820 79 LMALVMLNEQDTAVKFFSNH-----------------LMVGRVEEAYEMLMNVKNDGLKPD--VYTYTAIMDGFCKVGRS 139 (225)
Q Consensus 79 i~~~~~~~~~~~a~~~~~~~-----------------~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~ 139 (225)
..++...|++++|.++|+.+ .+.+++++|+..|....... .|. ...+..+-.++.+.|++
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCH
Confidence 34444555555555555333 56788888888887554321 111 23567778899999999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 045820 140 NEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217 (225)
Q Consensus 140 ~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 217 (225)
++|+..|++.......|.. ........-.++.+.|+.++|..+|+++... .|+...+..|
T Consensus 188 ~eAl~~l~~a~~g~~~P~~----------------~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEAC----------------ARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTT----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccc----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 9999999988754332210 2345566677888999999999999999975 3554444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00065 Score=44.22 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=58.6
Q ss_pred hCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHH
Q 045820 50 ASPLKERIDIFNSIKKDGT--NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127 (225)
Q Consensus 50 ~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 127 (225)
.|++++|+..|++..+.+. +-+...|..+-..|.+.|++ ++|...|++..+.. +-+...+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~----------------~~A~~~~~~al~~~-p~~~~~~~ 65 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEY----------------RKAEAVLANGVKQF-PNHQALRV 65 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCH----------------HHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCH----------------HHHHHHHHHHHHhC-CCchHHHH
Confidence 5778889999988887641 22455677777777555555 55555555554432 22567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 128 AIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 128 ~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.+-.++.+.|++++|...+++..+.
T Consensus 66 ~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 66 FYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8999999999999999999998765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0021 Score=43.40 Aligned_cols=129 Identities=9% Similarity=0.056 Sum_probs=84.5
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhh------------hHHHHH-HHHhCCHHHHHHHHHHHHhc----CCCC-Chh
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQ------------AQRFVD-KIKASPLKERIDIFNSIKKD----GTNW-SVS 73 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~l~~-~~~~~~~~~a~~~~~~m~~~----g~~~-~~~ 73 (225)
.+..+-..+...|++++|+..+.+..... +..+.. ....|++++|...+++..+. +-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34466667788999999998887743221 111111 23889999999999886543 1111 144
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 74 DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 74 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.+..+-..+...|++++|...+++. .++.. +.+..+ ...++..+-..|...|++++|...+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a---------~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKH---------LAIAQ---ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------HHHHH---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH---------HHHHH---HccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666777777777777777766543 22222 122122 2456888899999999999999999987653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0059 Score=46.39 Aligned_cols=84 Identities=15% Similarity=0.055 Sum_probs=56.4
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
..|++++|...|++..+. .| +...|..+-.+|.+.|++++|...+++..+..- -+...
T Consensus 16 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~ 74 (281)
T 2c2l_A 16 VGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-------------------QSVKA 74 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-------------------TCHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------------CCHHH
Confidence 334445555555544432 33 566777777888888888888888887776431 34567
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
|..+-.+|...|++++|...|++..+
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777788888888888888877654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0054 Score=39.43 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 045820 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQA 185 (225)
Q Consensus 106 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~ 185 (225)
.|...|++..+.. +-+...|..+-..|.+.|++++|...|++..+..- .+...|..+-.+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~~~~~la~~ 62 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-------------------TYSVAWKWLGKT 62 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-------------------CcHHHHHHHHHH
Confidence 4566677766532 23677899999999999999999999999887642 356788889999
Q ss_pred HHccCcHHHHHHHHHHHHhc
Q 045820 186 LCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 186 ~~~~g~~~~a~~~~~~m~~~ 205 (225)
|...|++++|...|++..+.
T Consensus 63 ~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 63 LQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998753
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0043 Score=41.05 Aligned_cols=93 Identities=9% Similarity=0.059 Sum_probs=66.4
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-C-CHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLK-P-DVY 124 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~ 124 (225)
..+.|++++|+..|++..+.. +-+...|+.+-.+|.+.|++++|.+.|+.. +++-. +.... + -..
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a---------l~~~~---~~~~~~~~~a~ 84 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA---------VEVGR---ETRADYKLIAK 84 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------HHHHH---HTTCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH---------HHhCc---ccchhhHHHHH
Confidence 448999999999999887763 336777888999998888877777766543 11111 11000 0 123
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
+|..+-.++...|++++|...|++..+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6777888899999999999999998764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0045 Score=40.59 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=67.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-C
Q 045820 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-D 122 (225)
Q Consensus 44 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~ 122 (225)
-...++.|++++|+..|++..+.. +-+...|..+-.++.+.|++ ++|...|++..+. .| +
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~----------------~~A~~~~~~al~l--~P~~ 84 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKD----------------GLAIIALNHARML--DPKD 84 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCH----------------HHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCH----------------HHHHHHHHHHHHh--CCCC
Confidence 344568999999999999988763 33677788787888555555 5555555555442 34 6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
...+..+-.+|.+.|++++|...+++..+.
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 85 IAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678889999999999999999999998754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.005 Score=38.74 Aligned_cols=83 Identities=12% Similarity=0.009 Sum_probs=67.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
+...|..+-..+.+.|++++|...+++..+..- .+...|..+...+...|++++|...+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 65 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-------------------EESKYWLMKGKALYNLERYEEAVDCYNY 65 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-------------------CCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 455677888899999999999999999987642 4567888899999999999999999999
Q ss_pred HHhcCCCC--CHHHHHHHHHHhhcC
Q 045820 202 MYEHGKIP--SRTSHDMLIKKLDQQ 224 (225)
Q Consensus 202 m~~~g~~p--~~~~~~~ll~~~~~~ 224 (225)
..+.. .. +...+..+...|.+.
T Consensus 66 a~~~~-~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 66 VINVI-EDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHTS-CCTTCHHHHHHHHHHHTTC
T ss_pred HHHhC-cccchHHHHHHHHHHHHHH
Confidence 98753 22 477777777777665
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.018 Score=38.19 Aligned_cols=88 Identities=13% Similarity=0.059 Sum_probs=65.6
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWS----VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD 122 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 122 (225)
....|++++|...|++..+. .|+ ...|..+-..|...|++++|...+ ++..+.. +.+
T Consensus 38 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~----------------~~~~~~~-~~~ 98 (148)
T 2dba_A 38 LFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEA----------------SKAIEKD-GGD 98 (148)
T ss_dssp HHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHT-SCC
T ss_pred HHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHH----------------HHHHhhC-ccC
Confidence 45889999999999998876 455 566777777776666555555544 4443321 235
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
...|..+-.+|.+.|++++|...|++..+..
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 6788888999999999999999999988754
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0059 Score=50.21 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=72.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
.+.|++++|.+.|++..+. .| +..+|+.+-.+|.+.|++++|...+++..+..- -+..
T Consensus 17 ~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------------------~~~~ 75 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-------------------KYIK 75 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-------------------TCHH
T ss_pred HHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------------CCHH
Confidence 3567788888888877653 34 578899999999999999999999999988642 4567
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
.|..+-.+|...|++++|.+.+++..+.
T Consensus 76 ~~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 76 GYYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999999874
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0093 Score=39.29 Aligned_cols=85 Identities=15% Similarity=0.008 Sum_probs=69.8
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 121 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
.+...|..+-..+.+.|++++|...|.+..+..- .+...|..+..+|...|++++|...++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-------------------LVAVYYTNRALCYLKMQQPEQALADCR 67 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-------------------CcHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4677889999999999999999999999887642 457789999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 201 LMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 201 ~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
...+.. +-+...+..+-.+|.+.|
T Consensus 68 ~al~~~-p~~~~~~~~l~~~~~~~~ 91 (137)
T 3q49_B 68 RALELD-GQSVKAHFFLGQCQLEME 91 (137)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHhC-chhHHHHHHHHHHHHHHh
Confidence 998753 235667777777766544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.028 Score=48.34 Aligned_cols=150 Identities=11% Similarity=-0.007 Sum_probs=90.7
Q ss_pred HhCCHHHHH-HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC------
Q 045820 49 KASPLKERI-DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP------ 121 (225)
Q Consensus 49 ~~~~~~~a~-~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p------ 121 (225)
+.|+.++|. .+|++-... ++.+...|-..+...-+.|+++.|.++|+...... ..-++.... +. |
T Consensus 355 ~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l-----~~~~~~~~~-~~-p~~~~~~ 426 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI-----HLDLAALME-DD-PTNESAI 426 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHHHHHHH-HS-TTCHHHH
T ss_pred hcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----HHHhhhhhh-cc-Ccchhhh
Confidence 667778886 888877654 34566667777888877888888887776652210 000000010 01 2
Q ss_pred ------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCccHHHHHHHHHHh------------hcC---CCCCHHH
Q 045820 122 ------DVYTYTAIMDGFCKVGRSNEAMELLNEAIER-G-VTQNVVTLIQLLQRL------------EMG---HIPRTIT 178 (225)
Q Consensus 122 ------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g-~~p~~~t~~~l~~~~------------~~~---~~p~~~~ 178 (225)
....|-..+....+.|..+.|..+|.+..+. + ..+......+.++.. +.+ +.-+...
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~ 506 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEY 506 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHH
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHH
Confidence 1235777777777777888888888887765 2 223333333333211 111 1234556
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
|...+.-....|+.+.|..+|+......
T Consensus 507 w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 6777777777899999999999988754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.015 Score=36.77 Aligned_cols=89 Identities=9% Similarity=0.021 Sum_probs=66.4
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|...|+...+.. +.+...|..+-..+.+.|++++|...++ +..+.. +.+...+
T Consensus 14 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~----------------~~~~~~-~~~~~~~ 75 (118)
T 1elw_A 14 ALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGC----------------KTVDLK-PDWGKGY 75 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH----------------HHHHHC-TTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHH----------------HHHHhC-cccHHHH
Confidence 448899999999999987763 3366777878888866666655555544 443321 2357788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+..++.+.|++++|...+++..+..
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 889999999999999999999988754
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0047 Score=39.04 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=46.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
+...|..+-..+.+.|++++|...|++..+..- .+...|..+-.+|.+.|++++|...+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 63 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-------------------QNPVGYSNKAMALIKLGEYTQAIQMCQQ 63 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 445666677777778888888888877776532 3556677777777788888888888877
Q ss_pred HHhc
Q 045820 202 MYEH 205 (225)
Q Consensus 202 m~~~ 205 (225)
..+.
T Consensus 64 al~~ 67 (111)
T 2l6j_A 64 GLRY 67 (111)
T ss_dssp HHTS
T ss_pred HHHh
Confidence 7753
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.021 Score=38.34 Aligned_cols=135 Identities=15% Similarity=0.123 Sum_probs=110.4
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------HhcCCHHHHHHHHHHHhhCCCC
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------LMVGRVEEAYEMLMNVKNDGLK 120 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------~~~g~~~~a~~~~~~m~~~g~~ 120 (225)
.+-.|.+++..++.....++. +..-||-+|--....-+=+...++++.. ..+|.+.....++-.+-
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n----- 88 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN----- 88 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT-----
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc-----
Confidence 346799999999998876552 5666888888888888888888888888 67888898888887664
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 121 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
.+..-.+.-++.....|+-++-.++..++.... + |+....-.+-.+|.+.|+..+|.+++.
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~------------------~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-E------------------VSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-C------------------SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-C------------------CChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 355677888999999999999999999864422 2 777888889999999999999999999
Q ss_pred HHHhcCCC
Q 045820 201 LMYEHGKI 208 (225)
Q Consensus 201 ~m~~~g~~ 208 (225)
+..+.|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 99999875
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0022 Score=40.50 Aligned_cols=82 Identities=15% Similarity=0.074 Sum_probs=64.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
+...+..+-..|.+.|++++|...|++..+..- -+...|..+-.+|...|++++|.+.+++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-------------------DYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 667888899999999999999999999987652 3566888999999999999999999998
Q ss_pred HHhc-CCCCCHHHHHHHHHHhh
Q 045820 202 MYEH-GKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 202 m~~~-g~~p~~~~~~~ll~~~~ 222 (225)
..+. .-.++.....-+...+.
T Consensus 67 al~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 67 GIEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHhhhhcCCchhHHHHHHHHHH
Confidence 8753 22355555555554443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0088 Score=41.44 Aligned_cols=106 Identities=14% Similarity=0.147 Sum_probs=74.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC-------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPD-------------VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
.+.|++++|...|++..+. .|+ ...|+..-.++.+.|++++|+..+++..+. ||.
T Consensus 22 ~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--------~n~-- 89 (159)
T 2hr2_A 22 LVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--------FNR-- 89 (159)
T ss_dssp HHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHH--
T ss_pred HHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------hhc--
Confidence 4456777777777766542 222 238999999999999999999999998875 000
Q ss_pred HHhhcCCCC-CHHHH----HHHHHHHHccCcHHHHHHHHHHHHh-----cCCCCCHHHHHHHHH
Q 045820 166 QRLEMGHIP-RTITF----NNVIQALCGVGKIHKALLLLFLMYE-----HGKIPSRTSHDMLIK 219 (225)
Q Consensus 166 ~~~~~~~~p-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ll~ 219 (225)
...+.| +...| ...-.++...|++++|+..|++..+ .|+.+........+.
T Consensus 90 ---~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 90 ---RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp ---HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred ---cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 000114 34567 8888999999999999999998864 367776666555544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.045 Score=44.56 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=74.7
Q ss_pred hhhHhhhcCCCCC---ChhhcchhhcCcchhhh------HHHHHHHHh-----CCHHHHHHHHHHHHhcCCCCChhhHHH
Q 045820 12 FSVLLVDSPSRSP---SAAESLDLKENPRSLQA------QRFVDKIKA-----SPLKERIDIFNSIKKDGTNWSVSDFND 77 (225)
Q Consensus 12 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~------~~l~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~ 77 (225)
.+..|-..|...| +.++|++.+.+.-..+. ..+-..+.. ++.++|...|+... .| +...+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence 3334444444566 66777766665322211 122223322 47777777777766 32 3444554
Q ss_pred HHHH-H--HhcCCHHHHHHHHHHH---------------HhcC-----CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 045820 78 LLMA-L--VMLNEQDTAVKFFSNH---------------LMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134 (225)
Q Consensus 78 li~~-~--~~~~~~~~a~~~~~~~---------------~~~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 134 (225)
+-.. + ...++.++|...|++. ...| +.++|.++|.+.. .| +...+..+-..|.
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYR 329 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHH
Confidence 5444 2 3467777777777665 2233 6677777766555 22 4445555555554
Q ss_pred h----cCCHHHHHHHHHHHHHcCC
Q 045820 135 K----VGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 135 ~----~g~~~~a~~~~~~m~~~g~ 154 (225)
. ..+.++|...|++..+.|.
T Consensus 330 ~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 330 RGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred CCCCCCcCHHHHHHHHHHHHhhCh
Confidence 4 3377777777777776654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.031 Score=37.42 Aligned_cols=112 Identities=10% Similarity=-0.053 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 130 (225)
+++++|+..|+.-.+.| .|.. . +=..|...+.+ ++|.++|.+..+.| +...++.+-
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a--~--lg~~y~~g~~~----------------~~A~~~~~~Aa~~g---~~~a~~~Lg 64 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFG--C--LSLVSNSQINK----------------QKLFQYLSKACELN---SGNGCRFLG 64 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTH--H--HHHHTCTTSCH----------------HHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhh--h--HHHHHHcCCCH----------------HHHHHHHHHHHcCC---CHHHHHHHH
Confidence 45788889998888877 3233 2 44444333334 44555555555543 455666666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHH
Q 045820 131 DGFCK----VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG----VGKIHKALLLLFLM 202 (225)
Q Consensus 131 ~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m 202 (225)
..|.. .+++++|...|++..+.|. ...+..|-..|.. .++.++|..+|+..
T Consensus 65 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---------------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 65 DFYENGKYVKKDLRKAAQYYSKACGLND---------------------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHTTC---------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHcCCC---------------------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 67776 7899999999999988764 3556666677776 78999999999999
Q ss_pred HhcCC
Q 045820 203 YEHGK 207 (225)
Q Consensus 203 ~~~g~ 207 (225)
.+.|.
T Consensus 124 a~~g~ 128 (138)
T 1klx_A 124 CRLGS 128 (138)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.016 Score=50.39 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=44.7
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMN 113 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~ 113 (225)
++..|+++.|+++.+.+ .+...|..+-..+.+.++++.|.+.|..+ ++++.+..++..
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~---~d~~~l~~l~~~ 719 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA---HDLESLFLLHSS 719 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH---TCHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc---cChhhhHHHHHH
Confidence 45677777777775443 36788999999999999999999999866 777776666554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.038 Score=42.67 Aligned_cols=151 Identities=8% Similarity=0.054 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHH------------------HhcCC------H
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD--TAVKFFSNH------------------LMVGR------V 104 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~------------------~~~g~------~ 104 (225)
+++++++.+++.+.+.. +-|..+|+.---.+.+.|.++ .+.++++.+ ...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 78899999999998774 448888998888887778776 777766666 22233 6
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 045820 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE-AMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVI 183 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li 183 (225)
+++++.++++.... +-|...|+-.-..+.+.|+... +..+..+..+.+- .-..+...+..+.
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~----------------~~~~s~~al~~la 265 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK----------------DQVTSSFALETLA 265 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG----------------TEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC----------------CCCCCHHHHHHHH
Confidence 66666666665432 2256666666666666665332 3344444433220 0015677888999
Q ss_pred HHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 045820 184 QALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 219 (225)
..|.+.|+.++|.++++.+.+.--+....-|+...+
T Consensus 266 ~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 266 KIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 999999999999999999986433444555554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0028 Score=52.35 Aligned_cols=124 Identities=7% Similarity=-0.057 Sum_probs=87.5
Q ss_pred cCCCCCChhhcchhhcCcchh--------------hhHHHHHHH-HhCCHHHHHHHHHHHHhc-----C--CCCChhhHH
Q 045820 19 SPSRSPSAAESLDLKENPRSL--------------QAQRFVDKI-KASPLKERIDIFNSIKKD-----G--TNWSVSDFN 76 (225)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~--------------~~~~l~~~~-~~~~~~~a~~~~~~m~~~-----g--~~~~~~~~~ 76 (225)
.+...|++++|+.++.+.... .++.+...+ ..|++++|..++++..+- | .+-...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999998877663211 123333333 789999999999876432 2 222445689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDV-YTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 77 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.|-..|...|++++|..+++ +|++++....... .|++ .+.+.+-.++...+.+++|+.++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~---------~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMIC---------KAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHH---------HHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH---------HHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776 4566666655332 2433 45677778888999999999999999864
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.029 Score=44.47 Aligned_cols=79 Identities=20% Similarity=0.095 Sum_probs=62.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
+...|+.+-.+|.+.|++++|...+++..+..- -+...|..+-.+|...|++++|...|++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-------------------SNTKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-------------------hhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 456788899999999999999999999987532 3567888889999999999999999999
Q ss_pred HHhcCCCC-CHHHHHHHHHHh
Q 045820 202 MYEHGKIP-SRTSHDMLIKKL 221 (225)
Q Consensus 202 m~~~g~~p-~~~~~~~ll~~~ 221 (225)
..+. .| +...+..+-..+
T Consensus 333 Al~l--~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 333 AQEI--APEDKAIQAELLKVK 351 (370)
T ss_dssp HHHH--CTTCHHHHHHHHHHH
T ss_pred HHHh--CCCCHHHHHHHHHHH
Confidence 8874 34 444444444433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.011 Score=48.07 Aligned_cols=95 Identities=12% Similarity=-0.018 Sum_probs=71.6
Q ss_pred HHHhCCHHHHHHHHHHHHhc--C-CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045820 47 KIKASPLKERIDIFNSIKKD--G-TNW----SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~--g-~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~ 119 (225)
..+.|++++|..++++..+. . +.| ...+++.+..+|...|++++|..++++ ++.++.+..-. -
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~---------~L~i~~~~lg~-~ 366 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTR---------TMEPYRIFFPG-S 366 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH---------HHHHHHHHSCS-S
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHH---------HHHhHHHHcCC-C
Confidence 44789999999999887643 1 222 345788899999999999888887764 45566555432 2
Q ss_pred CCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 120 KPDV-YTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 120 ~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
.|++ .+++.+-..|...|++++|+.++++..+
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4544 5699999999999999999999988654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.017 Score=46.15 Aligned_cols=142 Identities=8% Similarity=-0.017 Sum_probs=90.5
Q ss_pred HhCCHHHHHHHHHHHHhc-CCCCChh---hHHHHHH-HHHhcCCHHHHHHHHHHH------------------------H
Q 045820 49 KASPLKERIDIFNSIKKD-GTNWSVS---DFNDLLM-ALVMLNEQDTAVKFFSNH------------------------L 99 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~-g~~~~~~---~~~~li~-~~~~~~~~~~a~~~~~~~------------------------~ 99 (225)
..|++++|.+.+.+..+. +-.++.. .....+. .+...|+.+.+..++... .
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 146 (434)
T 4b4t_Q 67 TMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY 146 (434)
T ss_dssp HHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 778888888888776542 1111211 1222222 223346777777776555 5
Q ss_pred hcCCHHHHHHHHHHHhhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHHhhcCC
Q 045820 100 MVGRVEEAYEMLMNVKND----GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG--VTQNVVTLIQLLQRLEMGH 172 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~l~~~~~~~~ 172 (225)
..|++++|..++.+.... +-.+ ...+|..+...|...|++++|..++++..... +..+..
T Consensus 147 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------- 213 (434)
T 4b4t_Q 147 QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ------------- 213 (434)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH-------------
T ss_pred HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH-------------
Confidence 568888888888876532 2223 34579999999999999999999998876431 110000
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 173 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.-...+..+...+...|++++|...|.+..+
T Consensus 214 -~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 214 -TVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp -HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0134566777777888999998887777653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.012 Score=47.98 Aligned_cols=78 Identities=10% Similarity=0.002 Sum_probs=61.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
...|+.+-.+|.+.|++++|...+++..+..- .+...|..+-.+|...|++++|...|++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~a~~~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDS-------------------ANEKGLYRRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 57888999999999999999999999988642 46788899999999999999999999999
Q ss_pred HhcCCCCCH-HHHHHHHHHh
Q 045820 203 YEHGKIPSR-TSHDMLIKKL 221 (225)
Q Consensus 203 ~~~g~~p~~-~~~~~ll~~~ 221 (225)
.+. .|+. ..+..+-.++
T Consensus 378 l~l--~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 378 LEV--NPQNKAARLQISMCQ 395 (457)
T ss_dssp HTT--C----CHHHHHHHHH
T ss_pred HHh--CCCCHHHHHHHHHHH
Confidence 864 4433 3444444333
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0055 Score=49.78 Aligned_cols=92 Identities=9% Similarity=0.028 Sum_probs=69.3
Q ss_pred hCCHHHHHHHHHHHHhc---CCC---C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 045820 50 ASPLKERIDIFNSIKKD---GTN---W-SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD 122 (225)
Q Consensus 50 ~~~~~~a~~~~~~m~~~---g~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 122 (225)
.|++++|..++++..+. -+. | ...+++.|..+|...|++++|..++++ +++++.+..... .|+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~---------aL~i~~~~lG~~-Hp~ 380 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK---------IIKPYSKHYPVY-SLN 380 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---------HHHHHHHHSCSS-CHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHH---------HHHHHHHHcCCC-ChH
Confidence 47899999999876432 122 2 346789999999999999998887764 455665554322 455
Q ss_pred H-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 123 V-YTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 123 ~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
+ .++|.+-..|...|++++|+.++++..+
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 5 5699999999999999999999998764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.019 Score=45.55 Aligned_cols=114 Identities=9% Similarity=0.039 Sum_probs=78.8
Q ss_pred HHHhCCHHHHHHHHHHHHhc---------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKD---------------GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML 111 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~ 111 (225)
+.+.|++++|+..|++..+. --+-+...|..+-.+|.+. |++++|...+
T Consensus 233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~----------------g~~~~A~~~~ 296 (370)
T 1ihg_A 233 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM----------------SDWQGAVDSC 296 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc----------------cCHHHHHHHH
Confidence 34889999999999887651 0112345566666666444 5555566666
Q ss_pred HHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC
Q 045820 112 MNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG 190 (225)
Q Consensus 112 ~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g 190 (225)
++..+. .| +...|..+-.+|.+.|++++|...|++..+..- -+...+..+-..+...+
T Consensus 297 ~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-------------------~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 297 LEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-------------------EDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHHH
T ss_pred HHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHHH
Confidence 665543 34 677889999999999999999999999887642 24556666667776666
Q ss_pred cHHHHHH
Q 045820 191 KIHKALL 197 (225)
Q Consensus 191 ~~~~a~~ 197 (225)
+.+++.+
T Consensus 356 ~~~~a~k 362 (370)
T 1ihg_A 356 AQKDKEK 362 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.032 Score=38.60 Aligned_cols=95 Identities=18% Similarity=0.098 Sum_probs=69.7
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCC-C-----C-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045820 47 KIKASPLKERIDIFNSIKKDGTN-W-----S-----VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~-~-----~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~ 115 (225)
..+.|++++|+..|+.-.+..-. | + ...|+.+-.++.+.|++++|...++ .|+++|++-.
T Consensus 21 l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~---------kAL~l~n~~~ 91 (159)
T 2hr2_A 21 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD---------KALHYFNRRG 91 (159)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH---------HHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHH---------HHHHhhhccc
Confidence 34889999999999987654211 1 2 2278888888888888887777654 3445555444
Q ss_pred hCCCCCC-HHhH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 116 NDGLKPD-VYTY----TAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 116 ~~g~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
+ +.|+ ...| ...-.++...|++++|+..|++..+.
T Consensus 92 e--~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 E--LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp C--TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred c--CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3 4664 4578 88889999999999999999998653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.026 Score=48.96 Aligned_cols=139 Identities=19% Similarity=0.158 Sum_probs=87.4
Q ss_pred HHHhCCHHHHHH-HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHHhhCC
Q 045820 47 KIKASPLKERID-IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------SNHLMVGRVEEAYEMLMNVKNDG 118 (225)
Q Consensus 47 ~~~~~~~~~a~~-~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~-------~~~~~~g~~~~a~~~~~~m~~~g 118 (225)
++..+++++|.+ ++..+. +......++..+.+.|..+.|.++. +.....|+++.|+++.+.+
T Consensus 609 ~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~---- 678 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDE---- 678 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTC----
T ss_pred HHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhh----
Confidence 456788888877 553222 0122377777788888888877553 3337789999999885543
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCc
Q 045820 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-------TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK 191 (225)
Q Consensus 119 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-------~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~ 191 (225)
.+...|..+-..+.+.|+++.|+++|.++....- .-+..-...+.+..... .-++.-..+|.+.|+
T Consensus 679 --~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~-----~~~~~A~~~~~~~g~ 751 (814)
T 3mkq_A 679 --SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETT-----GKFNLAFNAYWIAGD 751 (814)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHTC
T ss_pred --CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHc-----CchHHHHHHHHHcCC
Confidence 3667899999999999999999999998754321 00111111111111111 123444555666778
Q ss_pred HHHHHHHHHHH
Q 045820 192 IHKALLLLFLM 202 (225)
Q Consensus 192 ~~~a~~~~~~m 202 (225)
+++|.+++.++
T Consensus 752 ~~~a~~~~~~~ 762 (814)
T 3mkq_A 752 IQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 88887777765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0078 Score=48.86 Aligned_cols=99 Identities=16% Similarity=0.108 Sum_probs=72.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC---CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 045820 94 FFSNHLMVGRVEEAYEMLMNVKND---GLKP----DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166 (225)
Q Consensus 94 ~~~~~~~~g~~~~a~~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~ 166 (225)
.+++..+.|++++|+.++++..+. -+.| -..+++.+..+|...|++++|+.++++..+.-.+
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~----------- 361 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI----------- 361 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH-----------
Confidence 344446789999999999988653 1222 2457999999999999999999999987643100
Q ss_pred HhhcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 167 RLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 167 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.-..-.|+ ..+++.|-..|...|++++|..++++..+
T Consensus 362 -~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 362 -FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp -HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 00011243 45789999999999999999999998754
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0084 Score=48.71 Aligned_cols=94 Identities=7% Similarity=-0.136 Sum_probs=69.7
Q ss_pred HhcCCHHHHHHHHHHHhh---CCCC---CC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcC
Q 045820 99 LMVGRVEEAYEMLMNVKN---DGLK---PD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMG 171 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~---~g~~---p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~ 171 (225)
...|++++|+.++++..+ .-+. |+ ..++|.+..+|...|++++|+.++++..+.-.+ .-..
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~------------~lG~ 376 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSK------------HYPV 376 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------HSCS
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH------------HcCC
Confidence 456889999999988654 2122 33 357999999999999999999999987643100 0001
Q ss_pred CCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 172 HIPR-TITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 172 ~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
-.|+ ..+|+.|-..|...|++++|..++++..+
T Consensus 377 ~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 1244 45799999999999999999999998764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.065 Score=40.52 Aligned_cols=87 Identities=8% Similarity=0.016 Sum_probs=63.7
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHh
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYT 125 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~ 125 (225)
..+.|++++|...|+...+.. +-+...|..+-.++.+.|+++ +|...+++..+. .| +...
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~----------------~A~~~~~~al~~--~p~~~~~ 74 (281)
T 2c2l_A 14 LFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPE----------------QALADCRRALEL--DGQSVKA 74 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH----------------HHHHHHHHHTTS--CTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHH----------------HHHHHHHHHHHh--CCCCHHH
Confidence 448899999999999887763 226777888888885555554 445555544442 34 5677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
+..+-.+|.+.|++++|...|.+..+.
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888999999999999999887653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.054 Score=36.95 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=62.8
Q ss_pred HHHhCCHHHHHHHHHHHHhc-------C----------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKD-------G----------TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~-------g----------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~ 109 (225)
.++.|++++|+..|+...+. . -+.+...|..+-.+|.+.|++ ++|..
T Consensus 21 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~----------------~~A~~ 84 (162)
T 3rkv_A 21 LFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDL----------------HEAEE 84 (162)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH----------------HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH----------------HHHHH
Confidence 45889999999998876553 0 011234566677777555555 45555
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.+++..+.. +.+...|..+-.+|...|++++|...|++..+..
T Consensus 85 ~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 85 TSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 555544421 3367789999999999999999999999988763
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.013 Score=45.81 Aligned_cols=61 Identities=15% Similarity=0.032 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.|+.+-.+|.+.|++++|...+++..+..- .+...|..+-.+|...|++++|...|++..+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE-------------------KNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788889999999999999999999887542 3677899999999999999999999998865
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0095 Score=41.22 Aligned_cols=102 Identities=12% Similarity=0.009 Sum_probs=76.6
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCccHHHHHHHHHHhh
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS----------NEAMELLNEAIERGVTQNVVTLIQLLQRLE 169 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~----------~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~ 169 (225)
+.+.+++|.+.+++..+.. +-+...|+.+-.++.+.+++ ++|...|++..+..-
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--------------- 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--------------- 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT---------------
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc---------------
Confidence 4466788888888877642 23777888777788877664 589999988887642
Q ss_pred cCCCCCHHHHHHHHHHHHcc-----------CcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 170 MGHIPRTITFNNVIQALCGV-----------GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 170 ~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
-+...|..+-.+|... |++++|++.|++..+ +.|+...|..-+...-+
T Consensus 78 ----~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 78 ----KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHT
T ss_pred ----CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHh
Confidence 3556788888888876 489999999999987 46888888777765543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.014 Score=36.75 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=38.9
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|...+++..+..
T Consensus 16 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 16 KQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4455555555555555432 2367788999999999999999999999998753
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.27 Score=39.87 Aligned_cols=130 Identities=13% Similarity=0.023 Sum_probs=84.7
Q ss_pred ChhhHHHHHHHHHhcC---CHHHHHHHHHHH----------------------HhcCCHHHHHHHHHHHhhCCCCCCHHh
Q 045820 71 SVSDFNDLLMALVMLN---EQDTAVKFFSNH----------------------LMVGRVEEAYEMLMNVKNDGLKPDVYT 125 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~---~~~~a~~~~~~~----------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~ 125 (225)
++..+..|-..|.+.| +.++|...|+.. ...++.++|.++|++.. .| +...
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a 250 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPAS 250 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHH
Confidence 4447788888888888 888888888765 11268888999988877 32 4445
Q ss_pred HHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhc--CC---------------CCCHHHHHHHHHH
Q 045820 126 YTAIMDG-F--CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM--GH---------------IPRTITFNNVIQA 185 (225)
Q Consensus 126 ~~~ll~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~--~~---------------~p~~~~~~~li~~ 185 (225)
+..+-.. | ...+++++|...|++..+.|. ...+..|=.++.. |+ .-+...+..|-..
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAADQ---PRAELLLGKLYYEGKWVPADAKAAEAHFEKAVGREVAADYYLGQI 327 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5555444 3 458899999999999888773 2222222211111 12 2234455555556
Q ss_pred HHc----cCcHHHHHHHHHHHHhcCC
Q 045820 186 LCG----VGKIHKALLLLFLMYEHGK 207 (225)
Q Consensus 186 ~~~----~g~~~~a~~~~~~m~~~g~ 207 (225)
|.. ..+.++|..+|+...+.|.
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 655 3488999999998888764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.036 Score=35.39 Aligned_cols=80 Identities=8% Similarity=-0.014 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 045820 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134 (225)
Q Consensus 55 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 134 (225)
.++..|++..+.. +-+...|..+-..+...|++++|...|+ +..+.. +.+...|..+-.+|.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~----------------~al~~~-p~~~~~~~~la~~~~ 64 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLR----------------AALDFD-PTYSVAWKWLGKTLQ 64 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHH----------------HHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH----------------HHHHHC-CCcHHHHHHHHHHHH
Confidence 4667777766553 3366778888888866666655555544 443321 235678889999999
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 045820 135 KVGRSNEAMELLNEAIER 152 (225)
Q Consensus 135 ~~g~~~~a~~~~~~m~~~ 152 (225)
+.|++++|...|++..+.
T Consensus 65 ~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 65 GQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.011 Score=46.27 Aligned_cols=118 Identities=10% Similarity=0.006 Sum_probs=60.4
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChh------------------hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVS------------------DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~------------------~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~ 110 (225)
+.|++++|...|++..+. .|+.. .|..+-.+|. +.|++++|...
T Consensus 191 ~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~----------------~~g~~~~A~~~ 252 (338)
T 2if4_A 191 KEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI----------------KLKRYDEAIGH 252 (338)
T ss_dssp SSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH----------------TTTCCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHH----------------HcCCHHHHHHH
Confidence 789999999999987654 33332 4444444454 44555666666
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHcc
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQA-LCGV 189 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~-~~~~ 189 (225)
|++..+.. +-+...|..+-.+|...|++++|...|++..+.. | -+...+..+... ....
T Consensus 253 ~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p-----------------~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 253 CNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--P-----------------DDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--C-----------------CCHHHHHHHHHHHHHHH
Confidence 66655432 2367889999999999999999999999876542 1 123344444443 2345
Q ss_pred CcHHHHHHHHHHHHh
Q 045820 190 GKIHKALLLLFLMYE 204 (225)
Q Consensus 190 g~~~~a~~~~~~m~~ 204 (225)
+..+++..+|+.|..
T Consensus 313 ~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 313 ALYQKQKEMYKGIFK 327 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHhhC
Confidence 667778888888864
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.27 Score=41.36 Aligned_cols=151 Identities=10% Similarity=0.006 Sum_probs=101.2
Q ss_pred HhCC-HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHH------------------H
Q 045820 49 KASP-LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE----------QDTAVKFFSNH------------------L 99 (225)
Q Consensus 49 ~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~------------------~ 99 (225)
+.+. .++|+..++.+...+- -+..+|+.-=.++.+.++ ++++.++++.+ .
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4444 5678999999887632 255667765555555555 77788777777 4
Q ss_pred hcC--CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCH
Q 045820 100 MVG--RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG-RSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176 (225)
Q Consensus 100 ~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~ 176 (225)
+.+ +++++++.++++.+.. +-+-.+|+----.+.+.| .++++.+.++++.+... -|.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-------------------~n~ 178 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-------------------SNY 178 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-------------------CCH
T ss_pred HcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-------------------CCc
Confidence 456 6788899888887743 237778888777777888 78888888888877654 345
Q ss_pred HHHHHHHHHHHc--------------cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 177 ITFNNVIQALCG--------------VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 177 ~~~~~li~~~~~--------------~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
..|+..-..+.+ .+.++++.+.+++..... +-|...|..+--.+
T Consensus 179 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll 236 (567)
T 1dce_A 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLL 236 (567)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHH
Confidence 555555444443 256788999998888643 22455665544444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.034 Score=38.43 Aligned_cols=96 Identities=9% Similarity=0.056 Sum_probs=74.1
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYT 127 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~ 127 (225)
+.+++++|...++.-.+.. +-+...|+.+=.++.+.++++.+...++ .+++|...|++..+- .| +..+|+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~------~~~eAi~~le~AL~l--dP~~~~A~~ 84 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQ------MIQEAITKFEEALLI--DPKKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHH------HHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHh------HHHHHHHHHHHHHHh--CcCcHHHHH
Confidence 5567888999998887764 4477888888888888777665544333 368899999988763 55 567899
Q ss_pred HHHHHHHhcC-----------CHHHHHHHHHHHHHcC
Q 045820 128 AIMDGFCKVG-----------RSNEAMELLNEAIERG 153 (225)
Q Consensus 128 ~ll~~~~~~g-----------~~~~a~~~~~~m~~~g 153 (225)
.+-.+|...| ++++|...|++..+..
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 9999998874 8999999999998753
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.21 Score=35.12 Aligned_cols=93 Identities=12% Similarity=0.186 Sum_probs=68.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------HhcCCHHHHHHHHHH
Q 045820 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH----------LMVGRVEEAYEMLMN 113 (225)
Q Consensus 44 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----------~~~g~~~~a~~~~~~ 113 (225)
+--++..|+++.|.++.+.+. +...|..|-....+.|+++-|.+.|... ...|+.++..++-+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHH
Confidence 444679999999999988762 6778999999999999999999999866 233444443433333
Q ss_pred HhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 114 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
-...| -+|.-...+.-.|+++++.++|.+
T Consensus 86 A~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 86 AQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333 367777778888999999988854
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.11 Score=31.05 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 72 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
...|..+-..+.+.|++ ++|...|++..+.. +.+...+..+-..|.+.|++++|...+++..+
T Consensus 9 ~~~~~~la~~~~~~~~~----------------~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDY----------------DEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCH----------------HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCH----------------HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555566666555555 55555555544321 23567888899999999999999999999887
Q ss_pred cC
Q 045820 152 RG 153 (225)
Q Consensus 152 ~g 153 (225)
..
T Consensus 72 ~~ 73 (91)
T 1na3_A 72 LD 73 (91)
T ss_dssp HC
T ss_pred cC
Confidence 54
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.2 Score=39.58 Aligned_cols=75 Identities=11% Similarity=0.048 Sum_probs=60.5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 045820 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199 (225)
Q Consensus 120 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 199 (225)
+.+..+|.++-..+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------------------~s~~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--------------------MSWLNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------------------CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4577888888777777899999999999999875 66667766677888899999999999
Q ss_pred HHHHhcCCCCCHHHHHH
Q 045820 200 FLMYEHGKIPSRTSHDM 216 (225)
Q Consensus 200 ~~m~~~g~~p~~~~~~~ 216 (225)
++.... .|...||.-
T Consensus 334 ~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 334 LTAFNL--RPGANTLYW 348 (372)
T ss_dssp HHHHHH--SCSHHHHHH
T ss_pred HHHHhc--CCCcChHHH
Confidence 988764 577777653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.079 Score=32.99 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=45.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
+...|..+-..|.+.|+ +++|...|++..+.. +-+...|..+-.+|.+.|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~----------------~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDN----------------ASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566667777755555 455555555555432 2256689999999999999999999999877
Q ss_pred Hc
Q 045820 151 ER 152 (225)
Q Consensus 151 ~~ 152 (225)
+.
T Consensus 69 ~l 70 (100)
T 3ma5_A 69 EV 70 (100)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.19 Score=30.73 Aligned_cols=58 Identities=17% Similarity=0.128 Sum_probs=48.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 130 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
...+.+.|++++|...|++..+..- .+.. .|..+-.+|...|++++|...|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-------------------VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-------------------STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-------------------CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4567889999999999999987642 3456 88888899999999999999999998753
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.66 Score=35.68 Aligned_cols=99 Identities=6% Similarity=-0.014 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHH----------------------Hhc---CCHHH
Q 045820 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN--EQDTAVKFFSNH----------------------LMV---GRVEE 106 (225)
Q Consensus 54 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~----------------------~~~---g~~~~ 106 (225)
++|+.+++.+...+ +-+...|+.-=..+...+ ++++++++++.+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 45666666655442 113333555555555555 566666665555 112 67788
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCC
Q 045820 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN--EAMELLNEAIERGV 154 (225)
Q Consensus 107 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~m~~~g~ 154 (225)
++++++++.+.. +-+-.+|+----...+.|.++ +++..++++.+...
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 888888887642 347778888777778888887 88999999887654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=95.09 E-value=1.2 Score=36.71 Aligned_cols=163 Identities=8% Similarity=0.050 Sum_probs=93.7
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC------------------------HHHHHHHHHHH----Hh
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE------------------------QDTAVKFFSNH----LM 100 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~------------------------~~~a~~~~~~~----~~ 100 (225)
+.|+++.|..++++-.+. +.+...|.. |+...+ ......++... .+
T Consensus 225 ~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 789999999999988877 334333332 222111 01111222111 34
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH------------
Q 045820 101 VGRVEEAYEMLMNVKNDGLKPDVYTY--TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------------ 166 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~------------ 166 (225)
.++.+.|..+|++....+ .+...| .+.+.... .++.+.|..+|+...+..-. +...+...++
T Consensus 299 ~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 299 KRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 677999999999883222 233333 23343333 23699999999998864311 1222222221
Q ss_pred -HhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc--C---CCC------------CHHHHHHHHHHhh
Q 045820 167 -RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH--G---KIP------------SRTSHDMLIKKLD 222 (225)
Q Consensus 167 -~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g---~~p------------~~~~~~~ll~~~~ 222 (225)
..+.. ......|...+.--...|+.+.+..++++.... + -.| ...++..+++.|.
T Consensus 375 ~l~er~-~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~ 447 (493)
T 2uy1_A 375 ALFKRL-EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFN 447 (493)
T ss_dssp HHHHHS-CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHC
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHHhh
Confidence 11222 234677888888777889999999988888741 1 111 1267777887774
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.63 Score=37.08 Aligned_cols=116 Identities=9% Similarity=0.078 Sum_probs=80.8
Q ss_pred HhCCHHHHHHHHHHHHhc--C-CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 045820 49 KASPLKERIDIFNSIKKD--G-TNWSV--SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDV 123 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~--g-~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 123 (225)
..|+.+.+...+++.... | .-++. ..|..-.....+.-..+....+.+.....|+.+++...+..+.... +-+.
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E 205 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH-PYRE 205 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 357888888888776554 3 22332 2344444444444444455555555578899999999888887542 3488
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHHHHHHH
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIE-----RGVTQNVVTLIQLL 165 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~l~ 165 (225)
..|-.+|.++.+.|+..+|++.|++..+ .|+.|+..+-...-
T Consensus 206 ~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 206 PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 8999999999999999999999988754 48887776544433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.17 Score=30.91 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=42.4
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVY-TYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..|++++|...|++..+.. +-+.. .|..+-.+|.+.|++++|...|++..+..
T Consensus 12 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 12 NQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4577788888888776642 22556 88888999999999999999999998764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=1.1 Score=35.07 Aligned_cols=147 Identities=7% Similarity=0.029 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHH------------------Hhc-C-CHHHHHH
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN-EQDTAVKFFSNH------------------LMV-G-RVEEAYE 109 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~------------------~~~-g-~~~~a~~ 109 (225)
...++|+.+++.+...+-. +..+|+.-=..+...+ .+++++.+++.+ ... + +.+++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4456788888888776322 5556777666666677 488888888777 222 4 7788899
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHH
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN--------EAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~ 181 (225)
+++++.+.. +-+-.+|+----...+.|.++ ++++.++++.+... -|...|+.
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-------------------~N~SAW~~ 206 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-------------------RNNSAWGW 206 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-------------------TCHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-------------------CCHHHHHH
Confidence 999888643 336777776555555555555 88888888888665 35666666
Q ss_pred HHHHHHccCc-------HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 045820 182 VIQALCGVGK-------IHKALLLLFLMYEHGKIPSRTSHDMLIK 219 (225)
Q Consensus 182 li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 219 (225)
.-..+.+.+. ++++++.+++.+... .-|...|+.+-.
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~ 250 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRG 250 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 6666666554 678888888877643 235566655433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.61 Score=31.84 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG---RSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
.+..+.+.|.+..+.|. ++..+.-.+-.++++.+ +.+++..++++..+.. .|+ -+...+
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~----------------~~rd~l 74 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKE----------------EQRDYV 74 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHH----------------HHHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-Ccc----------------chHHHH
Confidence 45566677777666654 67777666677888888 6779999999988764 210 023444
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHH
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 213 (225)
-.+--+|.+.|++++|.+.++.+.+. .|+-.-
T Consensus 75 Y~LAv~~~kl~~Y~~A~~y~~~lL~i--eP~n~Q 106 (152)
T 1pc2_A 75 FYLAVGNYRLKEYEKALKYVRGLLQT--EPQNNQ 106 (152)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHH
Confidence 55566779999999999999999874 565433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.53 Score=35.95 Aligned_cols=95 Identities=15% Similarity=0.043 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCC---HHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCC
Q 045820 102 GRVEEAYEMLMNVKNDGLKPD---VYTYTAIMDGFCKV-----GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173 (225)
Q Consensus 102 g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~ 173 (225)
+....|...+++..+ +.|+ -..|..+-..|.+. |+.++|.+.|++..+.+
T Consensus 177 ~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-------------------- 234 (301)
T 3u64_A 177 DTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-------------------- 234 (301)
T ss_dssp HHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--------------------
T ss_pred HhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--------------------
Confidence 344566666666655 3565 55789999999995 99999999999999865
Q ss_pred C--CHHHHHHHHHHHHcc-CcHHHHHHHHHHHHhcCCC--CCHHHHHHHH
Q 045820 174 P--RTITFNNVIQALCGV-GKIHKALLLLFLMYEHGKI--PSRTSHDMLI 218 (225)
Q Consensus 174 p--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll 218 (225)
| +..++...-..++.. |+.+++.+.+++....... |+....+.+-
T Consensus 235 P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 235 SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 5 367778888888884 9999999999999987766 7766666544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.53 Score=29.51 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=56.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
+..-+-.|-..+.+.|+++.|...|+...+.--.++ ..-.+....+..+..+|.+.|++++|..++++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~------------~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~ 71 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE------------ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC------------CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC------------CCcccHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 455566778888999999999999988776411000 00115667889999999999999999999999
Q ss_pred HHhcCCCCCH
Q 045820 202 MYEHGKIPSR 211 (225)
Q Consensus 202 m~~~g~~p~~ 211 (225)
..+. .|+.
T Consensus 72 al~l--~P~~ 79 (104)
T 2v5f_A 72 LLEL--DPEH 79 (104)
T ss_dssp HHHH--CTTC
T ss_pred HHhc--CCCC
Confidence 9863 4554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.87 Score=30.63 Aligned_cols=108 Identities=15% Similarity=0.229 Sum_probs=73.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCChhh---HHHHHHHHHhcCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045820 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSD---FNDLLMALVMLNEQDT-AVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119 (225)
Q Consensus 44 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~~~~~~-a~~~~~~~~~~g~~~~a~~~~~~m~~~g~ 119 (225)
+.+.+.+-+-+-..++++.+=+. .|... .-.++..|++.|...+ +-..++.+...|.-+.-.+++..+.. +.
T Consensus 46 ICNiiD~a~C~y~v~vLd~IGki---FDis~C~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~ 121 (172)
T 1wy6_A 46 ICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NN 121 (172)
T ss_dssp HHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---C
T ss_pred eeecchhhchhHHHHHHHHHhhh---cCcHhhhcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cC
Confidence 33344555555555555444322 22221 4567888888875432 22334555788999999999998643 34
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045820 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 120 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 155 (225)
+|+....-.+-.||.+.|+..+|.+++.+.-+.|++
T Consensus 122 ~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 122 EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 677777888899999999999999999999999985
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=94.02 E-value=0.81 Score=30.26 Aligned_cols=91 Identities=9% Similarity=-0.112 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHH
Q 045820 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181 (225)
Q Consensus 102 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~ 181 (225)
++.++|.++|.+..+.| .|+.. +-..|...+.+++|...|++..+.|. ...+..
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~---------------------~~a~~~ 62 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNS---------------------GNGCRF 62 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTC---------------------HHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCC---------------------HHHHHH
Confidence 46788888888888877 33333 55666677788999999999988764 345555
Q ss_pred HHHHHHc----cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 182 VIQALCG----VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 182 li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
|-..|.. .++.++|.++|+...+.| +...+..|-..|
T Consensus 63 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y 103 (138)
T 1klx_A 63 LGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQ 103 (138)
T ss_dssp HHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHH
Confidence 5555655 677888888888877765 344444444333
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.67 Score=36.90 Aligned_cols=72 Identities=18% Similarity=0.082 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh-
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE- 204 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 204 (225)
...++.++...|+++++...+.......- .+...|..+|.++.+.|+..+|.+.|+.+.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-------------------~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP-------------------YREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567778889999999988888875431 5778999999999999999999999998754
Q ss_pred ----cCCCCCHHHHHH
Q 045820 205 ----HGKIPSRTSHDM 216 (225)
Q Consensus 205 ----~g~~p~~~~~~~ 216 (225)
-|+.|+..+-..
T Consensus 235 L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 235 LADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHSCCCCHHHHHH
T ss_pred HHHHhCCCCCHHHHHH
Confidence 399998876443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=2 Score=33.63 Aligned_cols=196 Identities=7% Similarity=0.068 Sum_probs=129.6
Q ss_pred CCCChhhcchhhcCcchh---hhHH---HHHHH-HhC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-C-CHHHH
Q 045820 22 RSPSAAESLDLKENPRSL---QAQR---FVDKI-KAS-PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML-N-EQDTA 91 (225)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~---~~~~---l~~~~-~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-~-~~~~a 91 (225)
+.+..++|+++..++-.. .+.. --..+ ..+ .+++++..++.+.... +-+..+|+.--..+.+. + +.+++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 334445677666653222 1211 11122 345 5999999999998775 34788899888777776 6 88899
Q ss_pred HHHHHHH------------------HhcCCHH--------HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC-------
Q 045820 92 VKFFSNH------------------LMVGRVE--------EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR------- 138 (225)
Q Consensus 92 ~~~~~~~------------------~~~g~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------- 138 (225)
+++++.+ ...|.++ ++++.++++.+.. .-|...|+---..+.+.+.
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 9988888 2223333 8888999887753 3477889888888877776
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHH---HHHHhhcC---------------------------------------CCCCH
Q 045820 139 SNEAMELLNEAIERGVTQNVVTLIQ---LLQRLEMG---------------------------------------HIPRT 176 (225)
Q Consensus 139 ~~~a~~~~~~m~~~g~~p~~~t~~~---l~~~~~~~---------------------------------------~~p~~ 176 (225)
++++++.+++...... -|...|+- ++.....+ -.++.
T Consensus 224 ~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 6888888888776532 24444433 23221111 02566
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 220 (225)
.....+...|...|+.++|.++++.+.+.--+....-|+...+-
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 67888999999999999999999999765444455555554443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.87 E-value=1.1 Score=28.26 Aligned_cols=62 Identities=10% Similarity=0.063 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
|.-+..+-++.+....+.|+.....+.+.||.|..++..|.++|+-.+..-- +...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHH
Confidence 5566777788888888999999999999999999999999999999885432 1233454444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.86 E-value=1.3 Score=30.25 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=65.3
Q ss_pred HhCCH------HHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 045820 49 KASPL------KERIDIFNSIKKDGTNWS-VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP 121 (225)
Q Consensus 49 ~~~~~------~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p 121 (225)
+.|++ ++..++|++-... ++|+ ...|...|..+.+-- +|.+ .+++++|.++|+.+.+.+-+-
T Consensus 25 ~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-------~~~e---i~D~d~aR~vy~~a~~~hKkF 93 (161)
T 4h7y_A 25 KNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-------ELKA---IQEPDDARDYFQMARANCKKF 93 (161)
T ss_dssp HHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH-------HHHH---HHCGGGCHHHHHHHHHHCTTB
T ss_pred HcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH-------HHHH---hcCHHHHHHHHHHHHHHhHHH
Confidence 45777 7777888776654 4554 333555665554422 1222 278888888888886543232
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 158 (225)
...|-..-.-=.+.|++++|.+++.+.+..+-+|..
T Consensus 94 -AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 94 -AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 566666666668899999999999999988866443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=2.7 Score=32.68 Aligned_cols=136 Identities=10% Similarity=-0.005 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHH------------------HhcCC-HHHHHHHH
Q 045820 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN--EQDTAVKFFSNH------------------LMVGR-VEEAYEML 111 (225)
Q Consensus 53 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~------------------~~~g~-~~~a~~~~ 111 (225)
+++++..++.+.... +-+..+|+.---.+.+.+ +++.+..+++.+ ...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 678888888887764 448888988888887777 478888888777 34455 57888888
Q ss_pred HHHhhCCCCCCHHhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 112 MNVKNDGLKPDVYTYTAIMDGFCKV--------------GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 112 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
+++.+.. +-|...|+-.-..+.+. +.++++++.+.+...... -|..
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-------------------~d~S 228 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-------------------NDQS 228 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-------------------TCHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-------------------CCHH
Confidence 8887643 23677777766555554 346777777777776542 3445
Q ss_pred HHHHHHHHHHcc-----------CcHHHHHHHHHHHHhcCCCCCH
Q 045820 178 TFNNVIQALCGV-----------GKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 178 ~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
.|+-+-..+.+. +.++++++.++++.+. .||.
T Consensus 229 aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 229 AWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 555443333333 4578899999998864 4554
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
Probab=92.60 E-value=0.9 Score=32.77 Aligned_cols=32 Identities=9% Similarity=0.049 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 045820 39 LQAQRFVDKIKASPLKERIDIFNSIKKDGTNW 70 (225)
Q Consensus 39 ~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~ 70 (225)
.+..++..+++.|+.+....+++.+.+.|..+
T Consensus 8 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 34444555555555555555555444444333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.57 E-value=1.1 Score=27.55 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=46.3
Q ss_pred CCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 045820 121 PDVYTYTAIMDGFCKVGR---SNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197 (225)
Q Consensus 121 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 197 (225)
.|...+..+-.++...++ .++|..++++..+..- -++.....+-..+.+.|++++|+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-------------------~~~rA~~~lg~~~~~~g~y~~Ai~ 64 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-------------------YNEAALSLIANDHFISFRFQEAID 64 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-------------------CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 355556666666654444 6888888888877542 345666666777888888888888
Q ss_pred HHHHHHhc
Q 045820 198 LLFLMYEH 205 (225)
Q Consensus 198 ~~~~m~~~ 205 (225)
.|+.+.+.
T Consensus 65 ~w~~~l~~ 72 (93)
T 3bee_A 65 TWVLLLDS 72 (93)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 88888865
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.87 E-value=2.3 Score=29.75 Aligned_cols=92 Identities=11% Similarity=0.094 Sum_probs=51.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------ccHHHHHHHHHHhhcC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-------QNVVTLIQLLQRLEMG 171 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-------p~~~t~~~l~~~~~~~ 171 (225)
.+.|+++.|.++.+++. +...|..+-....+.|+++-|+++|.+....+-- -|..-+..+.+.....
T Consensus 16 L~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~ 89 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTR 89 (177)
T ss_dssp HHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHC
Confidence 45677777777766552 5667888888888888888888877765432110 0001111111111111
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 172 HIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 172 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
.-+|.-..++...|+++++.++|.+
T Consensus 90 -----g~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 90 -----EDFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp -----TCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1345555666667777777777654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.63 E-value=2.6 Score=28.10 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
|.-+..+-++.+....+.|+.....+.|.+|.|..|+..|.++|+-.+..- .+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 566777788888888899999999999999999999999999999988543 22233444444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=90.60 E-value=4.9 Score=31.19 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=76.0
Q ss_pred hhhhHHHHHHH----HhCCHH-HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHH----
Q 045820 38 SLQAQRFVDKI----KASPLK-ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE----------QDTAVKFFSNH---- 98 (225)
Q Consensus 38 ~~~~~~l~~~~----~~~~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~---- 98 (225)
...|..+...+ +.|.+. +|+.+++.+...+. -+..+|+.-=..+...+. ++.+..+++.+
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 33444444433 566655 79999999987632 244456654333332222 56677777666
Q ss_pred --------------HhcC--CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCC
Q 045820 99 --------------LMVG--RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR-SNEAMELLNEAIERGV 154 (225)
Q Consensus 99 --------------~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~ 154 (225)
...| ++++++.+++++.+.. +-|-.+|+----...+.|. +++++..++++.+...
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p 176 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 176 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence 3345 5889999999998743 3477788877777778887 5889999999988764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=90.38 E-value=3.9 Score=33.58 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=59.0
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHH------------------HhcCCHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM-LNEQDTAVKFFSNH------------------LMVGRVEEAYE 109 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~------------------~~~g~~~~a~~ 109 (225)
+.++.+.|..+|+.. +.. ..+...|......-.. .++.+.|..+|+.. ...|+.+.|..
T Consensus 298 r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 577899999999888 321 1233444322211111 23577777777655 34466677777
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
+|++.. .....|...+.-=...|+.+.+..+++++.+
T Consensus 376 l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 376 LFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777762 2456677777666677888777777777653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.71 E-value=3.5 Score=28.07 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CH-HhHHHH
Q 045820 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP--DV-YTYTAI 129 (225)
Q Consensus 53 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p--~~-~~~~~l 129 (225)
...+.+.|..-.+.|. ++..+.-.+-.++++.++.+ +.+++..+|++..+.. .| .. ..|+.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~-------------~~~~gI~lLe~ll~~~-~p~~~rd~lY~L- 77 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYND-------------DIRKGIVLLEELLPKG-SKEEQRDYVFYL- 77 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHH-------------HHHHHHHHHHHHHHHS-CHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHH-------------HHHHHHHHHHHHHhcC-CccchHHHHHHH-
Confidence 4455666666555554 67777777777887766321 3344444555444432 23 12 23554
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 045820 130 MDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 130 l~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
--+|.+.|++++|.+.++...+.
T Consensus 78 Av~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 78 AVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhc
Confidence 44789999999999999999875
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=89.10 E-value=2.7 Score=26.05 Aligned_cols=71 Identities=11% Similarity=0.069 Sum_probs=46.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 70 WSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND--GLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 70 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
.+...+-.+-..+.+.++++.|...|+.. .+.+ ... +-.+....+..+-.+|.+.|++++|...++
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~A---------l~~~---~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~ 70 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQA---------LRQL---DEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTK 70 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------HHHH---HTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHH---------HHhh---hccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 34445555666666666666655555432 1111 111 113456778999999999999999999999
Q ss_pred HHHHc
Q 045820 148 EAIER 152 (225)
Q Consensus 148 ~m~~~ 152 (225)
+..+.
T Consensus 71 ~al~l 75 (104)
T 2v5f_A 71 KLLEL 75 (104)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=88.73 E-value=9.7 Score=31.89 Aligned_cols=97 Identities=9% Similarity=-0.045 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHH
Q 045820 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG--RSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181 (225)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~ 181 (225)
++++++.++++.+.. +-+..+|+---..+.+.+ +++++...++++.+... -|...|+.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-------------------~N~~aW~~ 148 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-------------------RNFHCWDY 148 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-------------------TCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-------------------ccccHHHH
Confidence 899999999998743 236778888888888889 77999999999998764 46778887
Q ss_pred HHHHHHccC-cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 182 VIQALCGVG-KIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 182 li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
---.+.+.| ..+++.+.++++++... -|...|+..-..+
T Consensus 149 R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll 188 (567)
T 1dce_A 149 RRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLL 188 (567)
T ss_dssp HHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHH
Confidence 777777778 88999999999887542 2566666544443
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* | Back alignment and structure |
|---|
Probab=87.98 E-value=2.4 Score=30.95 Aligned_cols=60 Identities=10% Similarity=0.052 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhh-------HHHHHHHHH--hcCCHHHHHHHHHH
Q 045820 38 SLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSD-------FNDLLMALV--MLNEQDTAVKFFSN 97 (225)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-------~~~li~~~~--~~~~~~~a~~~~~~ 97 (225)
..+-.++..+++.|+.+....+++.+.+.|..++... ++.|..|.. +.|+.+-+..+++.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3455678888899999888888888877777666443 344554442 56777777777665
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=86.46 E-value=6.5 Score=31.08 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=42.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++.....
T Consensus 289 ~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 289 VKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3477777788888777654 788888888888999999999999999888753
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.40 E-value=3.5 Score=26.00 Aligned_cols=47 Identities=17% Similarity=-0.013 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 52 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
+.-+..+-++.+....+-|++.+..+.+.||-+.+|+..|.++|+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~i 71 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 71 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44556666777777889999999999999998888888888887766
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=86.10 E-value=4.9 Score=27.82 Aligned_cols=17 Identities=0% Similarity=-0.085 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHhCCHHH
Q 045820 39 LQAQRFVDKIKASPLKE 55 (225)
Q Consensus 39 ~~~~~l~~~~~~~~~~~ 55 (225)
.+..++..+++.|+.+-
T Consensus 38 ~g~t~L~~A~~~~~~~~ 54 (201)
T 3hra_A 38 EGNTPLNIAVHNNDIEI 54 (201)
T ss_dssp TSCCHHHHHHHHTCHHH
T ss_pred CCCCHHHHHHHcCCHHH
Confidence 34456666666666443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=85.71 E-value=4.4 Score=24.73 Aligned_cols=48 Identities=15% Similarity=0.123 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 104 VEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.++|..++++..+. .| ++.+...+-..+.+.|++++|...|+++.+..
T Consensus 25 ~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 46677777766653 45 66778888889999999999999999999764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=84.98 E-value=6.2 Score=25.87 Aligned_cols=91 Identities=13% Similarity=0.076 Sum_probs=59.6
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE---AMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~ 176 (225)
....+..+.+-|.+....|. |+..+--.+-.+++++.+..+ +..++++..+.+- |. -..
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~----------------~~R 74 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KE----------------EQR 74 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HH----------------HHH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cc----------------hHH
Confidence 34455566666666655454 666655555668888886665 8888888776541 10 022
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
...-.|--++.+.|++++|.+.++.+.+. .|+
T Consensus 75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 75 DYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCC
Confidence 33345557888999999999999999874 453
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.60 E-value=6.1 Score=26.38 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=42.7
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 045820 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220 (225)
Q Consensus 166 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 220 (225)
.+......|+.....+-+.+|-+.+++..|.++|+-.+.+ ..+...+|..+++-
T Consensus 78 ~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 78 TLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 3445566699999999999999999999999999998854 23445568777764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=83.92 E-value=12 Score=28.47 Aligned_cols=88 Identities=15% Similarity=0.065 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHhHH
Q 045820 53 LKERIDIFNSIKKDGTNWS---VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP--DVYTYT 127 (225)
Q Consensus 53 ~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~ 127 (225)
...|..++++..+. .|+ -..|..+-..|.+... .--|+.++|.+.|++-.+ +.| +..++.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp-----------~~gGd~ekA~~~ferAL~--LnP~~~id~~v 243 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPE-----------SFGGGMEKAHTAFEHLTR--YCSAHDPDHHI 243 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCT-----------TTTCCHHHHHHHHHHHHH--HCCTTCSHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCC-----------ccCCCHHHHHHHHHHHHH--hCCCCCchHHH
Confidence 34455555554443 555 4568888888866421 124677777777777766 355 377777
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHcCCC
Q 045820 128 AIMDGFCKV-GRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 128 ~ll~~~~~~-g~~~~a~~~~~~m~~~g~~ 155 (225)
..-..+++. |+.+++.+.+++.......
T Consensus 244 ~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 244 TYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 888888885 9999999999999987654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.82 E-value=6.1 Score=24.82 Aligned_cols=50 Identities=16% Similarity=0.052 Sum_probs=37.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
...|++++|..+.+.+. -||...|-++ +-.|.|..++++.-+.++-..|-
T Consensus 50 mNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL~~la~sg~ 99 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGNP----WPALEPWFAL--CEWHLGLGAALDRRLAGLGGSSD 99 (115)
T ss_dssp HHTTCHHHHHGGGTTCC----CGGGHHHHHH--HHHHTTCHHHHHHHHHHHHTCSS
T ss_pred HcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHHHHHHhCCC
Confidence 45677777776644333 7999998876 45688988999888888887764
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.54 E-value=6.3 Score=24.79 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=36.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
...|++++|..+.+.+. -||...|-++ +-.|.|..++++.-+.++-..|-
T Consensus 51 mNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL~~la~sg~ 100 (116)
T 2p58_C 51 MNRGDYASALQQGNKLA----YPDLEPWLAL--CEYRLGLGSALESRLNRLARSQD 100 (116)
T ss_dssp HHTTCHHHHHHHHTTSC----CGGGHHHHHH--HHHHHTCHHHHHHHHHHHTTCCC
T ss_pred HcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHHHHHHhCCC
Confidence 45677777777655444 7999998876 44688888888888878777664
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=83.26 E-value=0.021 Score=46.90 Aligned_cols=140 Identities=12% Similarity=0.018 Sum_probs=92.4
Q ss_pred CCchhhHhhhcCCCCCChhhcchhhcCcc-hhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 045820 9 PTPFSVLLVDSPSRSPSAAESLDLKENPR-SLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86 (225)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 86 (225)
.+..+..|-.+..+.+++.+|++.+-+.+ ...+..++..+ ++|.+++-+..+..-++. ..++.+=+.|+.+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhC
Confidence 34566678888999999999999887744 45577777766 788888888877655555 335566778999999998
Q ss_pred CHHHHHHHH------------HHHHhcCCHHHHHHHHHHHhhC--------------------CCCCCHHhHHHHHHHHH
Q 045820 87 EQDTAVKFF------------SNHLMVGRVEEAYEMLMNVKND--------------------GLKPDVYTYTAIMDGFC 134 (225)
Q Consensus 87 ~~~~a~~~~------------~~~~~~g~~~~a~~~~~~m~~~--------------------g~~p~~~~~~~ll~~~~ 134 (225)
+..+..+++ ++....|.++.|.-+|..+... .-.-++.||--+-.+|.
T Consensus 131 rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACv 210 (624)
T 3lvg_A 131 RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 210 (624)
T ss_dssp SSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHH
T ss_pred cHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHh
Confidence 876554443 2222233333333333222110 11346788888888999
Q ss_pred hcCCHHHHHHHHHHHH
Q 045820 135 KVGRSNEAMELLNEAI 150 (225)
Q Consensus 135 ~~g~~~~a~~~~~~m~ 150 (225)
..+.+.-|.-+--..+
T Consensus 211 d~~EfrLAqicGLniI 226 (624)
T 3lvg_A 211 DGKEFRLAQMCGLHIV 226 (624)
T ss_dssp HSCTTTTTTHHHHHHH
T ss_pred CchHHHHHHHhcchhc
Confidence 8888877766554444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.38 E-value=24 Score=32.29 Aligned_cols=70 Identities=16% Similarity=0.104 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
.|..+.+++...|++++|...+-.+.....+ ...+..|+ .|++.+.. ..|+ .+--.|..++..+++..-.
T Consensus 940 l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~------~~L~-~lpf~gl~~~Vd~IL~~kA 1010 (1139)
T 4fhn_B 940 ITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKI------NQLL-NYSMPTLRQDVDNLLERKA 1010 (1139)
T ss_dssp HHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCH------HHHH-HHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCCh------hhhh-CCCCccHHHHHHHHHHHHH
Confidence 5899999999999999999999888876655 33444454 56655531 1121 2334556666666665433
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=82.06 E-value=10 Score=26.13 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=12.6
Q ss_pred hhHHHHHHHHhCCHHHHHHHHH
Q 045820 40 QAQRFVDKIKASPLKERIDIFN 61 (225)
Q Consensus 40 ~~~~l~~~~~~~~~~~a~~~~~ 61 (225)
+..++..++..|+.+....++.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 5 EVGALLEAANQRDTKKVKEILQ 26 (201)
T ss_dssp CTTHHHHHHHTTCHHHHHHHHT
T ss_pred cccHHHHHHHhccHHHHHHHHH
Confidence 4455666666666665555543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 225 | |||
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.1 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.07 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.06 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.66 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.53 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.46 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.29 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.21 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.09 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.08 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.92 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.87 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.86 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.84 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.82 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.79 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.77 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 97.75 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.74 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.7 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 97.65 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.62 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.61 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.58 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.57 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.54 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 97.39 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.32 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.29 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.24 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.21 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.01 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.96 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.89 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.59 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.51 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 96.38 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 96.3 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.27 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.12 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.06 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.01 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 95.99 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 95.87 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 95.84 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 95.73 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 95.27 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 95.19 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.11 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 92.69 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.48 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 91.72 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 91.07 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 88.6 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 88.27 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.42 | |
| d1uoha_ | 223 | 26S proteasome non-ATPase regulatory subunit 10, g | 84.49 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 82.1 |
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.8e-08 Score=76.45 Aligned_cols=171 Identities=11% Similarity=-0.009 Sum_probs=117.7
Q ss_pred hHhhhcCCCCCChhhcchhhcCcchh-----h-hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 045820 14 VLLVDSPSRSPSAAESLDLKENPRSL-----Q-AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 86 (225)
...-..+.+.|++++|+..+++.... . +..+.. ....|++++|...|++..+.. +-+...|..+...|...|
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34445678999999999998773221 1 222222 238899999999999887653 236777888999999999
Q ss_pred CHHHHHHHHHHH---------------------------------HhcCCHHHHHHHHHHHhhCC-CCCCHHhHHHHHHH
Q 045820 87 EQDTAVKFFSNH---------------------------------LMVGRVEEAYEMLMNVKNDG-LKPDVYTYTAIMDG 132 (225)
Q Consensus 87 ~~~~a~~~~~~~---------------------------------~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~ 132 (225)
+++.|.+.++.. ...+...+|.+.|.+..+.. -.++...+..+-..
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 999999998876 23456677888877765422 23456778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 133 FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 133 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
+.+.|++++|...|++..+..- -+...|..+-..|.+.|++++|.+.|++..+
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 234 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVRP-------------------NDYLLWNKLGATLANGNQSEEAVAAYRRALE 234 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhccccccccccc-------------------ccccchhhhhhcccccccchhHHHHHHHHHH
Confidence 9999999999999998876532 1233444444555555555555555555443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.2e-08 Score=78.50 Aligned_cols=203 Identities=10% Similarity=-0.001 Sum_probs=140.6
Q ss_pred hcCCCCCChhhcchhhcCcchh-----hh-HHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 045820 18 DSPSRSPSAAESLDLKENPRSL-----QA-QRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDT 90 (225)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~-----~~-~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~ 90 (225)
..+.+.|++++|++.+.+.... .. ..+.. ..+.|++++|...|++..+.. +-+..+|..+...|.+.|++++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 4456778999999888774322 11 11222 237899999999999887663 3356788999999999999999
Q ss_pred HHHHHHHH------------------------------------------------------------------------
Q 045820 91 AVKFFSNH------------------------------------------------------------------------ 98 (225)
Q Consensus 91 a~~~~~~~------------------------------------------------------------------------ 98 (225)
|...+...
T Consensus 86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T d1w3ba_ 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC
Confidence 99888666
Q ss_pred --------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 045820 99 --------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163 (225)
Q Consensus 99 --------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 163 (225)
...|++++|...+.+..+. .| +..+|..+...+...|++++|...+.+..+...... ..+..
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~ 242 (388)
T d1w3ba_ 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA-VVHGN 242 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH-HHHHH
T ss_pred cchhHHHHhhcccccccCcHHHHHHHHHHHHHh--CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHH-HHHHH
Confidence 4568888888888887653 34 556788888888999999999999988887654332 22222
Q ss_pred HH-------------HHhhc--CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 164 LL-------------QRLEM--GHIP-RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 164 l~-------------~~~~~--~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
+- ..++. ...| +..+|..+...+...|++++|.+.++..... .+.+...+..+...|.+.|
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCC
Confidence 21 11111 1223 4567788888888888888888888887654 2456667777777666554
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.5e-08 Score=77.92 Aligned_cols=188 Identities=13% Similarity=0.029 Sum_probs=123.1
Q ss_pred HhhhcCCCCCChhhcchhhcCcchh---h---hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSL---Q---AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~---~---~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 87 (225)
.+...+...|.+++|...+.+.... . +..+.. ....|++++|...++...+.. ..+...+..+-..+.+.|+
T Consensus 174 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 252 (388)
T d1w3ba_ 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCC
Confidence 4445566666777666665542211 1 111222 225677777777777666553 3345556666677777777
Q ss_pred HHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 88 QDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 88 ~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
+++|...|++. ...|++++|.+.++...... +.+...+..+...+.+.|++++|...|++.
T Consensus 253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 331 (388)
T d1w3ba_ 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777776654 44567777777777665432 345566677777777777777777777766
Q ss_pred HHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhcCC
Q 045820 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS-RTSHDMLIKKLDQQP 225 (225)
Q Consensus 150 ~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 225 (225)
.+.. | -+..+|..+-..|.+.|++++|...|++..+ +.|+ ...|..|-..|.+.|
T Consensus 332 l~~~--p-----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 332 LEVF--P-----------------EFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTSC--T-----------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHhC--C-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 5432 1 2466788899999999999999999999886 3564 678888888887665
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=2.4e-06 Score=64.38 Aligned_cols=139 Identities=8% Similarity=0.038 Sum_probs=114.5
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------------HhcCCHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------------LMVGRVEEAYE 109 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------~~~g~~~~a~~ 109 (225)
+.|.++.|..+|+.+.+........+|...+..+.+.|+.+.|.++|+.. ...|+.+.|..
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHH
Confidence 78999999999999887643334557999999999999999999999887 34589999999
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG 188 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~ 188 (225)
+|+..... .+-+...|...++...+.|+++.|..+|++..+.. ..|. -....|...+.--..
T Consensus 191 i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~----------------~~~~iw~~~~~fE~~ 253 (308)
T d2onda1 191 IFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE----------------KSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG----------------GCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH----------------HHHHHHHHHHHHHHH
Confidence 99999874 23467789999999999999999999999987753 3310 124578888888888
Q ss_pred cCcHHHHHHHHHHHHh
Q 045820 189 VGKIHKALLLLFLMYE 204 (225)
Q Consensus 189 ~g~~~~a~~~~~~m~~ 204 (225)
+|+.+.+.++++.+.+
T Consensus 254 ~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 254 IGDLASILKVEKRRFT 269 (308)
T ss_dssp HSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999998865
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=9e-06 Score=61.07 Aligned_cols=165 Identities=10% Similarity=0.015 Sum_probs=106.7
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLK 120 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~ 120 (225)
++.-...++.|++++|+..|+...+.. +-+..+|..+-.++...|+++.|...|.+. .+. .
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a----------------l~~--~ 83 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRC----------------LEL--K 83 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------HHH--C
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhh----------------hcc--c
Confidence 444555679999999999999998773 336778998999997777776666666543 221 2
Q ss_pred C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------cc--H-------------------HHHHHHH----HHh
Q 045820 121 P-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT------QN--V-------------------VTLIQLL----QRL 168 (225)
Q Consensus 121 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~------p~--~-------------------~t~~~l~----~~~ 168 (225)
| +...|..+...|.+.|++++|...+++.....-. +. . ..+.-.+ +..
T Consensus 84 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 3 4456666667777777777777777766543211 00 0 0000000 111
Q ss_pred h-cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 169 E-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 169 ~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
+ ..-.++...+..+...+...|++++|...+++..... +-+...|..+-..|.+.|
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 220 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGN 220 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccc
Confidence 1 1123456788888899999999999999999988643 224667777777776654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.46 E-value=1.5e-05 Score=59.80 Aligned_cols=149 Identities=6% Similarity=-0.016 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------------HhcCCHHHHHHHH
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------------LMVGRVEEAYEML 111 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------~~~g~~~~a~~~~ 111 (225)
+..+++..+|++-.+...+-+...|........+.|+++.|..+|+.+ .+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 346778889988876655556677888888887778887777777665 3445566666666
Q ss_pred HHHhhCCCCCCHHhHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC
Q 045820 112 MNVKNDGLKPDVYTYTAIM-DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG 190 (225)
Q Consensus 112 ~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g 190 (225)
.+..+.+.. +...|-... .-+...|+.+.|..+|+.+.+.. .-+...|...+....+.|
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-------------------p~~~~~w~~y~~~~~~~g 217 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-------------------GDIPEYVLAYIDYLSHLN 217 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-------------------TTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-------------------hhhHHHHHHHHHHHHHcC
Confidence 665543321 122222111 12233455666666666655432 145678999999999999
Q ss_pred cHHHHHHHHHHHHhc-CCCCC--HHHHHHHHH
Q 045820 191 KIHKALLLLFLMYEH-GKIPS--RTSHDMLIK 219 (225)
Q Consensus 191 ~~~~a~~~~~~m~~~-g~~p~--~~~~~~ll~ 219 (225)
+++.|..+|++..+. +..|+ ...|...+.
T Consensus 218 ~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~ 249 (308)
T d2onda1 218 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 249 (308)
T ss_dssp CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 999999999998875 45554 345555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=9.1e-05 Score=51.60 Aligned_cols=151 Identities=16% Similarity=0.062 Sum_probs=100.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 045820 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDV 123 (225)
Q Consensus 44 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 123 (225)
-+.....|+++.|++.|+++ .+|+..+|..+=.+|.+.|++++|.+.|+ +..+.. +-+.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~----------------kAl~ld-p~~~ 70 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFT----------------RSINRD-KHLA 70 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHH----------------HHHHHC-TTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHH----------------HHHHHh-hhhh
Confidence 34456899999999999875 35677888888888866666655555444 444321 2367
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCC--CC-HHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI--PR-TITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~--p~-~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
..|+.+-.+|.+.|++++|..-|++....... +.. +.....|.. ++ ..++..+-.+|.+.|++++|.+.+.
T Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~-n~~-----~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~ 144 (192)
T d1hh8a_ 71 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG-NQL-----IDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 144 (192)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CSE-----EECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-Cch-----HHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 78999999999999999999999988753211 000 000001111 11 2456667788999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHh
Q 045820 201 LMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 201 ~m~~~g~~p~~~~~~~ll~~~ 221 (225)
...+....|+......-+..+
T Consensus 145 ~A~~~~~~~~~~~~~~Al~~~ 165 (192)
T d1hh8a_ 145 LATSMKSEPRHSKIDKAMECV 165 (192)
T ss_dssp HHHTTCCSGGGGHHHHHHHHH
T ss_pred HHHhcCCCcchHHHHHHHHHH
Confidence 988766566555554444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=4.9e-05 Score=48.49 Aligned_cols=95 Identities=14% Similarity=0.094 Sum_probs=79.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|..+|++..+.. +-+...|+.+-.+|.+.|++++|...+.+..+..- .+...
T Consensus 14 ~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~ 73 (117)
T d1elwa_ 14 LSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-------------------DWGKG 73 (117)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------------------TCHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc-------------------chhhH
Confidence 56788888999988887642 33777899999999999999999999999998753 57889
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHH
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 215 (225)
|..+-.++...|++++|+..|+...+. .|+...+.
T Consensus 74 ~~~~g~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~ 108 (117)
T d1elwa_ 74 YSRKAAALEFLNRFEEAKRTYEEGLKH--EANNPQLK 108 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 999999999999999999999999864 46554443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=6.9e-05 Score=56.45 Aligned_cols=170 Identities=9% Similarity=0.070 Sum_probs=112.0
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHH------------------HhcCCHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN-EQDTAVKFFSNH------------------LMVGRVEEAYE 109 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~------------------~~~g~~~~a~~ 109 (225)
+.+..++|+.+++...+.. +-+...|+..-.++...| ++++|...++.. ...|++++|+.
T Consensus 55 ~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~ 133 (315)
T d2h6fa1 55 RDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 133 (315)
T ss_dssp HTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred hCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHH
Confidence 6678889999998888763 225556777777777765 588888888776 56788899999
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH-------------------Hh--
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-------------------RL-- 168 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~-------------------~~-- 168 (225)
.++++.+.. +-+...|+.+...+.+.|++++|...+++..+.... +...|+.+-. ..
T Consensus 134 ~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~ 211 (315)
T d2h6fa1 134 FIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 211 (315)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHH
T ss_pred HHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhhhHHhHHHHHH
Confidence 999987632 236888999999999999999999999999886532 2333332210 00
Q ss_pred hcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhh
Q 045820 169 EMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLMYEHGK-IPSRTSHDMLIKKLD 222 (225)
Q Consensus 169 ~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~ 222 (225)
.....| +...|+.+...+...| .+++.+.++...+... ..+...+..+.+.|.
T Consensus 212 al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 212 MIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 011123 4555665555444444 5677777777665322 224555666666554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.09 E-value=0.0006 Score=48.90 Aligned_cols=159 Identities=15% Similarity=0.034 Sum_probs=96.7
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
+.|++++|+..|++..+.. +-++.+|+.+-.++.+.|++++|...|++. ...|++++|...
T Consensus 49 ~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 127 (259)
T d1xnfa_ 49 SLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD 127 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHH
Confidence 7899999999998877653 336677888888888888888888877766 455777777777
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH----------HHhhcC------CCC
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL----------QRLEMG------HIP 174 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~----------~~~~~~------~~p 174 (225)
|++..+.. +.+......+..++.+.+..+.+..+........-.+......... ...... ..|
T Consensus 128 ~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (259)
T d1xnfa_ 128 LLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 206 (259)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 77665532 1233333333344455555555555544444433222111111111 000000 011
Q ss_pred C-HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 175 R-TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 175 ~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
+ ..+|..+-..|...|++++|.+.|+...+. .|+.
T Consensus 207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 242 (259)
T d1xnfa_ 207 HLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 242 (259)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCC
Confidence 1 245677888999999999999999998864 4553
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=0.00012 Score=49.07 Aligned_cols=88 Identities=13% Similarity=0.020 Sum_probs=74.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
.+.|++++|...|.+..+.. +-+...|..+-..|.+.|++++|...|++..+..- -+...
T Consensus 21 ~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-------------------~~~~a 80 (159)
T d1a17a_ 21 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-------------------KYIKG 80 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHH
T ss_pred HHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-------------------cchHH
Confidence 56788888888888887643 23777899999999999999999999999987652 45688
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
|..+..+|...|++++|...+++..+..
T Consensus 81 ~~~~g~~~~~~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 81 YYRRAASNMALGKFRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999998753
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.92 E-value=0.00052 Score=47.08 Aligned_cols=71 Identities=18% Similarity=0.072 Sum_probs=51.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
..+..+..++.+.|++++|...+++..+..- -+...|..++.+|.+.|+.++|.+.|+++.
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P-------------------~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHP-------------------YREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCC-------------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4566677778888888888888887776532 466778888888888888888888877764
Q ss_pred h-----cCCCCCHHH
Q 045820 204 E-----HGKIPSRTS 213 (225)
Q Consensus 204 ~-----~g~~p~~~~ 213 (225)
+ -|+.|...+
T Consensus 129 ~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 129 TTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHSCCCCHHH
T ss_pred HHHHHHhCCCcCHHH
Confidence 3 478887655
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.87 E-value=9.7e-05 Score=46.63 Aligned_cols=84 Identities=14% Similarity=0.032 Sum_probs=70.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
.+.|++++|...|++.... .| +...|..+-.++.+.|++++|+..|++..+..- -+..
T Consensus 27 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~ 85 (112)
T d1hxia_ 27 LKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-------------------KDIA 85 (112)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHH
T ss_pred HHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccccc-------------------cccc
Confidence 3557777788888877664 45 678899999999999999999999999887642 4578
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
.|..+...|...|+.++|.+.+++..
T Consensus 86 a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 86 VHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 89999999999999999999998763
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=0.00022 Score=49.52 Aligned_cols=83 Identities=13% Similarity=0.009 Sum_probs=72.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|+++.|++.|.++. .|+..+|..+-..|.+.|++++|+..|++..+..- -+...
T Consensus 16 ~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-------------------~~~~a 72 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-------------------HLAVA 72 (192)
T ss_dssp HHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHH
T ss_pred HHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-------------------hhhhh
Confidence 56789999999988754 56778888999999999999999999999988653 46788
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
|..+-.+|.+.|++++|...|++...
T Consensus 73 ~~~~g~~~~~~g~~~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 73 YFQRGMLYYQTEKYDLAIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 99999999999999999999998765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.84 E-value=0.00026 Score=48.88 Aligned_cols=86 Identities=14% Similarity=0.019 Sum_probs=67.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
.+.|++++|...|.+..... +-+...|+.+-.+|.+.|++++|...|++..+..- -+...
T Consensus 15 ~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-------------------~~~~a 74 (201)
T d2c2la1 15 FVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-------------------QSVKA 74 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-------------------TCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-------------------CcHHH
Confidence 45566777777777665532 33677899999999999999999999999876431 25678
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
|..+-.+|...|++++|...|++..+
T Consensus 75 ~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 75 HFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999999999999998764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.82 E-value=0.00061 Score=50.29 Aligned_cols=144 Identities=12% Similarity=-0.057 Sum_probs=96.6
Q ss_pred HhCCHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------------------
Q 045820 49 KASPLKERIDIFNSIKKD----GTNW-SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------- 98 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------- 98 (225)
..+++++|...|.+..+. +-.+ -..+|+.+-.+|.+.|++++|.+.++..
T Consensus 49 ~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 128 (290)
T d1qqea_ 49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE 128 (290)
T ss_dssp HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHh
Confidence 567888888888766432 2121 2346777888888888888888877654
Q ss_pred HhcCCHHHHHHHHHHHhh----CCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCC
Q 045820 99 LMVGRVEEAYEMLMNVKN----DGLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~ 173 (225)
...|++++|.+.|.+..+ .+-.+. ..+|..+...|.+.|++++|...|++........... .
T Consensus 129 ~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~-------------~ 195 (290)
T d1qqea_ 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS-------------Q 195 (290)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT-------------G
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh-------------h
Confidence 235889999999887643 232222 3468889999999999999999999988754221000 0
Q ss_pred CCH-HHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 174 PRT-ITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 174 p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
... ..|...+.++...|+++.|...++...+.
T Consensus 196 ~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 111 12344455666778888888888877654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=0.00012 Score=47.14 Aligned_cols=105 Identities=12% Similarity=0.063 Sum_probs=74.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhc
Q 045820 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR---SNEAMELLNEAIERGVTQNVVTLIQLLQRLEM 170 (225)
Q Consensus 94 ~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~ 170 (225)
+.+.+...+++++|.+.|++....+ +.+..++..+-.++.+.++ +++|..++++..+....
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~--------------- 68 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--------------- 68 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH---------------
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC---------------
Confidence 3334456677788888888777643 3466777777888877554 45699999988765432
Q ss_pred CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 045820 171 GHIPR-TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219 (225)
Q Consensus 171 ~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 219 (225)
|+ ..+|..+-.+|.+.|++++|.+.|++..+. .|+..-...+..
T Consensus 69 ---~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--~P~~~~A~~l~~ 113 (122)
T d1nzna_ 69 ---EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQNNQAKELER 113 (122)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--CcCCHHHHHHHH
Confidence 22 346778889999999999999999999984 577655544443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=0.00076 Score=45.02 Aligned_cols=89 Identities=10% Similarity=0.029 Sum_probs=69.1
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
+++.|++++|+..|++..+.. +-+...|..+-..|...|+++ +|...|++..+.. +-+..+|
T Consensus 20 ~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~----------------~A~~~~~kal~~~-p~~~~a~ 81 (159)
T d1a17a_ 20 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYG----------------YALGDATRAIELD-KKYIKGY 81 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHH----------------HHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccc----------------hHHHHHHHHHHHc-ccchHHH
Confidence 459999999999999988774 347777888888886555554 5555555554421 3366889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+..+|...|++++|...+++..+..
T Consensus 82 ~~~g~~~~~~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 82 YRRAASNMALGKFRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999998764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=0.0016 Score=48.21 Aligned_cols=210 Identities=11% Similarity=0.002 Sum_probs=114.2
Q ss_pred HhhhcCCCCCChhhcchhhcCc-----chhhh------HHHHH-HHHhCCHHHHHHHHHHHHhc----CC-CCChhhHHH
Q 045820 15 LLVDSPSRSPSAAESLDLKENP-----RSLQA------QRFVD-KIKASPLKERIDIFNSIKKD----GT-NWSVSDFND 77 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~-----~~~~~------~~l~~-~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~ 77 (225)
.....+...|++++|++.+++. ..... ..+-. ....|++++|+..|++..+. +- .....++..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 3344456778888887776551 11110 11111 22678888888888765432 11 112234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHH--------------------------HhcCCHHHHHHHHHHHhhC----CCCCCHHhHH
Q 045820 78 LLMALVMLNEQDTAVKFFSNH--------------------------LMVGRVEEAYEMLMNVKND----GLKPDVYTYT 127 (225)
Q Consensus 78 li~~~~~~~~~~~a~~~~~~~--------------------------~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~ 127 (225)
+...+...|+++.+...+... ...|+++.+...+...... +......++.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 666677777777777666543 4567777777777766542 2222344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCccHH--HHHHHH-------------HHhhcC-------CCCCHHHHHH
Q 045820 128 AIMDGFCKVGRSNEAMELLNEAIER----GVTQNVV--TLIQLL-------------QRLEMG-------HIPRTITFNN 181 (225)
Q Consensus 128 ~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~--t~~~l~-------------~~~~~~-------~~p~~~~~~~ 181 (225)
.....+...++...+...+.+.... +..+... .+..+. ...... .......+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 6666677777777777776655432 1111111 111111 111111 1122345666
Q ss_pred HHHHHHccCcHHHHHHHHHHHHh----cCCCCCH-HHHHHHHHHhhcC
Q 045820 182 VIQALCGVGKIHKALLLLFLMYE----HGKIPSR-TSHDMLIKKLDQQ 224 (225)
Q Consensus 182 li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~-~~~~~ll~~~~~~ 224 (225)
+...+...|++++|...+++... .+..|+. .++..+-..|.+.
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 304 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 304 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHC
Confidence 77888899999999999988763 2444443 3444444455443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00051 Score=51.48 Aligned_cols=79 Identities=8% Similarity=0.145 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcC-CHHHHHHHHHHHhhCCCCC-CHHhHHHHHHH
Q 045820 73 SDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVG-RVEEAYEMLMNVKNDGLKP-DVYTYTAIMDG 132 (225)
Q Consensus 73 ~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g-~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~ 132 (225)
..|+.+-..+.+.+..++|.+++++. ...| ++++|...+++..+. .| +..+|+..-..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHH
Confidence 34555555566777788888888777 2334 699999999998764 34 67889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 045820 133 FCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 133 ~~~~g~~~~a~~~~~~m~~~g 153 (225)
+.+.|++++|...++++.+..
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d 142 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD 142 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC
T ss_pred HHhhccHHHHHHHHhhhhhhh
Confidence 999999999999999999764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=0.0016 Score=41.06 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=68.8
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
+++.|++++|+.+|++..+.. +-+...|..+-.+|.+.|++++| ...+.+..+.+ +.+...|
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A----------------~~~~~~al~~~-p~~~~~~ 74 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKA----------------YEDGCKTVDLK-PDWGKGY 74 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH----------------HHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-Ccchhhhhccccccccccccccc----------------chhhhhHHHhc-cchhhHH
Confidence 568999999999999988773 44777788888888666655554 44555544432 3477889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..+-.++...|++++|...|++..+.
T Consensus 75 ~~~g~~~~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 75 SRKAAALEFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999864
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=0.0014 Score=48.43 Aligned_cols=177 Identities=12% Similarity=-0.014 Sum_probs=100.4
Q ss_pred hHhhhcCCCCCChhhcchhhcCcchhhh---------HH---HH-HHHHhCCHHHHHHHHHHHHh----cCCCCC---hh
Q 045820 14 VLLVDSPSRSPSAAESLDLKENPRSLQA---------QR---FV-DKIKASPLKERIDIFNSIKK----DGTNWS---VS 73 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~---l~-~~~~~~~~~~a~~~~~~m~~----~g~~~~---~~ 73 (225)
..+-..+...|++++|+..+.+...... .. +. .....|++..+...+..... .+.... ..
T Consensus 55 ~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~ 134 (366)
T d1hz4a_ 55 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 134 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHH
Confidence 3456678889999999988876432210 01 11 12267888888887765432 222111 22
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH-------------------------------------------------------
Q 045820 74 DFNDLLMALVMLNEQDTAVKFFSNH------------------------------------------------------- 98 (225)
Q Consensus 74 ~~~~li~~~~~~~~~~~a~~~~~~~------------------------------------------------------- 98 (225)
.+..+-..+...|+++.+...+...
T Consensus 135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 214 (366)
T d1hz4a_ 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 214 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence 3445556777788888888777665
Q ss_pred ---------HhcCCHHHHHHHHHHHhhCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 045820 99 ---------LMVGRVEEAYEMLMNVKNDGLKP---DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166 (225)
Q Consensus 99 ---------~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~ 166 (225)
...|+.++|...+.+........ ....+..+..++...|++++|...+++.....
T Consensus 215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------- 281 (366)
T d1hz4a_ 215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA------------- 281 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------
Confidence 33345555555544433221111 12233344445555555555555555443210
Q ss_pred HhhcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 167 RLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 167 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
...+..|+ ...+..+-..|.+.|++++|.+.+++..+
T Consensus 282 -~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 282 -RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp -HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -hhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01122233 35677788899999999999999988654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.00024 Score=45.60 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=73.1
Q ss_pred HHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 045820 44 FVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD 122 (225)
Q Consensus 44 l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 122 (225)
+++ .+..+++++|.+.|+...+.+ +.++.++..+-.++.+.++. +++++|..+|++....+..|+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~-------------~d~~~Ai~~l~~~l~~~~~~~ 70 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYN-------------DDIRKGIVLLEELLPKGSKEE 70 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSH-------------HHHHHHHHHHHHHTTTSCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcch-------------HHHHHHHHHHHHHHhccCCch
Confidence 344 447889999999999888764 44778888888888765544 355678888888776543344
Q ss_pred -HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 123 -VYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 123 -~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+|..+-.+|.+.|++++|...|++..+..
T Consensus 71 ~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 71 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhC
Confidence 3467778899999999999999999999853
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.61 E-value=0.0011 Score=45.30 Aligned_cols=113 Identities=9% Similarity=0.095 Sum_probs=76.3
Q ss_pred HHHhCCHHHHHHHHHHHHhc--CCC-CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 045820 47 KIKASPLKERIDIFNSIKKD--GTN-WS--VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP 121 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~--g~~-~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p 121 (225)
....|++++|...|.+-... |-. ++ ...|..-.....+....+....+.+.....|++++|...+++..+.. +-
T Consensus 21 ~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~ 99 (179)
T d2ff4a2 21 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH-PY 99 (179)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-Cc
Confidence 45889999999999887653 211 11 11122222222222222333333344477899999999999987742 33
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIE-----RGVTQNVVT 160 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t 160 (225)
+...|..++.+|.+.|+.++|++.|++..+ .|+.|+..+
T Consensus 100 ~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 100 REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 888999999999999999999999999744 588877654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.58 E-value=0.00082 Score=46.25 Aligned_cols=86 Identities=9% Similarity=0.055 Sum_probs=66.8
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHh
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYT 125 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~ 125 (225)
+++.|++++|+..|+...+.. +-+...|+.+-.+|.+.|+++ +|...|.+..+ +.| +..+
T Consensus 14 ~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~----------------~Ai~~~~~al~--l~p~~~~a 74 (201)
T d2c2la1 14 LFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPE----------------QALADCRRALE--LDGQSVKA 74 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH----------------HHHHHHHHHTT--SCTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhh----------------hhhHHHHHHHH--hCCCcHHH
Confidence 458999999999999887663 447777888888886665555 45555555543 356 5778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
|..+-.+|.+.|++++|...|++..+
T Consensus 75 ~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 75 HFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.57 E-value=0.0015 Score=48.02 Aligned_cols=176 Identities=9% Similarity=-0.019 Sum_probs=110.0
Q ss_pred hhHhhhcCCCCCChhhcchhhcCcchh------------hhHHHHHHH-HhCCHHHHHHHHHHHHhc----CC-CCChhh
Q 045820 13 SVLLVDSPSRSPSAAESLDLKENPRSL------------QAQRFVDKI-KASPLKERIDIFNSIKKD----GT-NWSVSD 74 (225)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~l~~~~-~~~~~~~a~~~~~~m~~~----g~-~~~~~~ 74 (225)
|..+...|...+++++|++.+.+.-.. .+..+..++ +.|++++|...++...+. |- .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 445566777888888888888774332 122233333 789999999998865432 21 112344
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHH------------------------HhcCCHHHHHHHHHHHhhCCCCC-----CH-
Q 045820 75 FNDLLMALVM-LNEQDTAVKFFSNH------------------------LMVGRVEEAYEMLMNVKNDGLKP-----DV- 123 (225)
Q Consensus 75 ~~~li~~~~~-~~~~~~a~~~~~~~------------------------~~~g~~~~a~~~~~~m~~~g~~p-----~~- 123 (225)
+..+...|-. .|+++.|.+.|+.. ...|++++|...|++........ ..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 5555556644 59999999888665 77899999999999987642111 11
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc--cCcHHHHHHHHH
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG--VGKIHKALLLLF 200 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~ 200 (225)
..|......+...|+++.|...+++..+.... ++. ........++.++-. ...+++|+.-|+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s---------------re~~~l~~l~~a~~~~d~e~~~eai~~y~ 264 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS---------------RESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------------------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 12334455677889999999999988765321 000 112344566666665 345777777776
Q ss_pred HHH
Q 045820 201 LMY 203 (225)
Q Consensus 201 ~m~ 203 (225)
.+.
T Consensus 265 ~~~ 267 (290)
T d1qqea_ 265 NFM 267 (290)
T ss_dssp TSS
T ss_pred HHh
Confidence 543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.54 E-value=0.00089 Score=41.94 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=67.9
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLK 120 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~ 120 (225)
++.-....+.|++++|...|++..+.. +-+...|..+-.++.+.|++++|.. .|++..+. .
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~----------------~~~~al~~--~ 80 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAII----------------ALNHARML--D 80 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHH----------------HHHHHHHH--C
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhc----------------cccccccc--c
Confidence 334444569999999999999988774 2267888888888866666555554 44444432 3
Q ss_pred C-CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 121 P-DVYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 121 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
| +..+|..+-..|.+.|++++|.+.+++.
T Consensus 81 p~~~~a~~~la~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 81 PKDIAVHAALAVSHTNEHNANAALASLRAW 110 (112)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4 6788999999999999999999999875
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=0.01 Score=42.05 Aligned_cols=98 Identities=16% Similarity=0.049 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCC-CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHH
Q 045820 53 LKERIDIFNSIKKDGT-NW--SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEML 111 (225)
Q Consensus 53 ~~~a~~~~~~m~~~g~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~ 111 (225)
.+.++.-+++...... .+ ...+|..+-..|.+.|+++.|...|++. ...|++++|.+.|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 3455555666654321 11 2235555667787788888888777666 5567777777777
Q ss_pred HHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 112 MNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 112 ~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
++..+. .| +..+|..+-.+|.+.|++++|...|++..+.
T Consensus 95 ~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 95 DSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 776653 23 3445666666667777777777777666654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.32 E-value=0.0083 Score=39.50 Aligned_cols=71 Identities=10% Similarity=0.017 Sum_probs=59.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
..+|+.+-.+|.+.|++++|...+.+..+..- .++..|..+..+|...|++++|...|+..
T Consensus 67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-------------------~~~ka~~~~g~~~~~lg~~~~A~~~~~~a 127 (153)
T d2fbna1 67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-------------------NNVKALYKLGVANMYFGFLEEAKENLYKA 127 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHhcccchhhhhhhccccccc-------------------hhhhhhHHhHHHHHHcCCHHHHHHHHHHH
Confidence 34677888999999999999999999887642 57789999999999999999999999999
Q ss_pred HhcCCCCCHHHH
Q 045820 203 YEHGKIPSRTSH 214 (225)
Q Consensus 203 ~~~g~~p~~~~~ 214 (225)
.+. .|+....
T Consensus 128 l~l--~P~n~~~ 137 (153)
T d2fbna1 128 ASL--NPNNLDI 137 (153)
T ss_dssp HHH--STTCHHH
T ss_pred HHh--CCCCHHH
Confidence 874 3654433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.01 Score=39.81 Aligned_cols=50 Identities=8% Similarity=-0.043 Sum_probs=24.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
+.|++++|...+++.... .| ++.+|..+-.+|...|++++|...|++..+
T Consensus 74 k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345555555555554432 22 444444455555555555555555555444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.0029 Score=40.49 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=72.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC-HH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR-TI 177 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~-~~ 177 (225)
...|++++|...|.+..+.+ +.+...|..+-.+|.+.|++++|...++++.+..-.. ...+ ++ ..
T Consensus 15 ~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~-~~~~------------~~~a~ 80 (128)
T d1elra_ 15 YKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-REDY------------RQIAK 80 (128)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TTCH------------HHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc-HHHH------------HHHHH
Confidence 56678888888888877643 2367889999999999999999999999987642100 0000 01 24
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHH
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 215 (225)
+|..+-..+...+++++|++.|+.-.... |+.....
T Consensus 81 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~ 116 (128)
T d1elra_ 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLK 116 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCHHHHH
Confidence 67777788889999999999999887643 4444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.21 E-value=0.006 Score=40.85 Aligned_cols=65 Identities=20% Similarity=0.044 Sum_probs=50.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
....|+.+-.+|.+.|++++|+..+++..+..- .+...|..+-.+|.+.|++++|.+.|+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-------------------~~~~a~~~~g~~~~~l~~~~~A~~~~~~ 136 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-------------------SNTKALYRRAQGWQGLKEYDQALADLKK 136 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-------------------hhhhHHHhHHHHHHHccCHHHHHHHHHH
Confidence 445667777788888888888888888876432 4567788888888888888888888888
Q ss_pred HHhc
Q 045820 202 MYEH 205 (225)
Q Consensus 202 m~~~ 205 (225)
..+.
T Consensus 137 al~l 140 (169)
T d1ihga1 137 AQEI 140 (169)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.01 E-value=0.015 Score=36.80 Aligned_cols=135 Identities=15% Similarity=0.118 Sum_probs=108.9
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------HhcCCHHHHHHHHHHHhhCCCC
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------LMVGRVEEAYEMLMNVKNDGLK 120 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------~~~g~~~~a~~~~~~m~~~g~~ 120 (225)
.+-.|.+++..++......+. +..-||-+|--....-+-+.+.++++.. ..++.+.....++-.+-
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n----- 83 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN----- 83 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT-----
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhc-----
Confidence 346789999999988876542 5666888888888888888888888888 66777788777776654
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 121 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
.+..-++.-++...+.|+-+.-.++++++.+.+- |+....-.+-.+|-+.|...++-+++.
T Consensus 84 ~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~-------------------i~~~~llkia~A~kkig~~re~nell~ 144 (161)
T d1wy6a1 84 TLNEHVNKALDILVIQGKRDKLEEIGREILKNNE-------------------VSASILVAIANALRRVGDERDATTLLI 144 (161)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CC-------------------SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC-------------------CCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 2445678889999999999999999999777543 777888888999999999999999999
Q ss_pred HHHhcCCC
Q 045820 201 LMYEHGKI 208 (225)
Q Consensus 201 ~m~~~g~~ 208 (225)
+..++|++
T Consensus 145 ~ACe~G~K 152 (161)
T d1wy6a1 145 EACKKGEK 152 (161)
T ss_dssp HHHHTTCH
T ss_pred HHHHHhHH
Confidence 99999875
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.96 E-value=0.007 Score=39.55 Aligned_cols=124 Identities=12% Similarity=0.093 Sum_probs=85.1
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYT 127 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~ 127 (225)
+.+.+++|+..|+...+.. +-+..++..+=.++...+++..+.+-. +.+++|...|++..+- .| +..+|+
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~------~~~~~Ai~~~~kAl~l--~P~~~~a~~ 79 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK------QMIQEAITKFEEALLI--DPKKDEAVW 79 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH------HHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHH------HHHHHHHHHHHHHHHh--cchhhHHHh
Confidence 4566899999999988774 446677777777777766665444432 3457888888888763 45 667888
Q ss_pred HHHHHHHhcCC-----------HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 045820 128 AIMDGFCKVGR-----------SNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196 (225)
Q Consensus 128 ~ll~~~~~~g~-----------~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 196 (225)
.+-.+|...|+ +++|...|++..+.. |+...|..-+..+ .+|.
T Consensus 80 ~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~--------------------P~~~~~~~~L~~~------~ka~ 133 (145)
T d1zu2a1 80 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--------------------PDNTHYLKSLEMT------AKAP 133 (145)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHH------HTHH
T ss_pred hHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC--------------------CCHHHHHHHHHHH------HHHH
Confidence 88888876653 577777777777643 6655555544443 4667
Q ss_pred HHHHHHHhcCC
Q 045820 197 LLLFLMYEHGK 207 (225)
Q Consensus 197 ~~~~~m~~~g~ 207 (225)
+++.+..+.|+
T Consensus 134 ~~~~e~~k~~~ 144 (145)
T d1zu2a1 134 QLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHHHhc
Confidence 77777777664
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.89 E-value=0.0012 Score=48.15 Aligned_cols=106 Identities=9% Similarity=0.061 Sum_probs=75.3
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHH
Q 045820 46 DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM-----------VGRVEEAYEMLMNV 114 (225)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----------~g~~~~a~~~~~~m 114 (225)
++++.|++++|+..+++-.+.. +-|...+..+...++..|++++|...|+...+ .+..-.+.....+.
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4567899999999999888773 44788899999999999999999999988722 12222233333333
Q ss_pred hhC-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 115 KND-------GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 115 ~~~-------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
... +-+++...+......+.+.|+.++|..++++..+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 221 11123344455567788899999999999998765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.59 E-value=0.0098 Score=43.11 Aligned_cols=104 Identities=16% Similarity=0.135 Sum_probs=74.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH----HHHHHHH-------H
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV----TLIQLLQ-------R 167 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----t~~~l~~-------~ 167 (225)
.+.|++++|...+.+..+.. +-|...+..+...|+..|++++|...++...+.. |+.. .|..++. .
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHHH
Confidence 56799999999999988752 3478899999999999999999999999998753 4332 2333331 1
Q ss_pred hhc-------CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 168 LEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 168 ~~~-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
... +-.++...+......+...|+.++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111 11122334444556677889999999999998764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.014 Score=37.02 Aligned_cols=98 Identities=9% Similarity=0.125 Sum_probs=68.3
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHh
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD-VYT 125 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~ 125 (225)
.++.|++++|+..|++..+.+ +-+...|..+-.+|.+.|+++.|...++.. +++-.... ...+. ..+
T Consensus 14 ~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a---------l~l~~~~~--~~~~~~a~~ 81 (128)
T d1elra_ 14 AYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA---------IEVGRENR--EDYRQIAKA 81 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH---------HHHHHHST--TCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHH---------HHhCcccH--HHHHHHHHH
Confidence 458999999999999988774 346788999999998877777777666554 11111000 00111 246
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 156 (225)
|..+-..+...+++++|...|.+-....-.|
T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence 7778888899999999999998877654333
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.38 E-value=0.11 Score=38.21 Aligned_cols=166 Identities=12% Similarity=-0.003 Sum_probs=107.3
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHH-------------------HhcCCHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE--QDTAVKFFSNH-------------------LMVGRVEEA 107 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~-------------------~~~g~~~~a 107 (225)
..+++++|+..++...+.. +-+...|..+-.++...++ ++.+...++.. ...+..++|
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH
Confidence 4566889999999887663 3367778877777777654 77888777666 456888999
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH--------------HHHHH-cCCCccHHHHHHHH-------
Q 045820 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL--------------NEAIE-RGVTQNVVTLIQLL------- 165 (225)
Q Consensus 108 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~--------------~~m~~-~g~~p~~~t~~~l~------- 165 (225)
+..+++..... +-+...|+.+-..+.+.|++++|...+ ..... .........|...+
T Consensus 164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~ 242 (334)
T d1dcea1 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPL 242 (334)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchh
Confidence 99988887653 236777888888888888776542221 11111 11222233333322
Q ss_pred --------------------HHhhcCCC--C-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH-HHHHHHH
Q 045820 166 --------------------QRLEMGHI--P-RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR-TSHDMLI 218 (225)
Q Consensus 166 --------------------~~~~~~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll 218 (225)
..+..... | +...|..+...|...|+.++|.+.++...+. -|+. .-|..|-
T Consensus 243 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~ 317 (334)
T d1dcea1 243 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLR 317 (334)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHH
Confidence 11122222 2 3456777888899999999999999999873 5643 3444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.30 E-value=0.072 Score=35.37 Aligned_cols=60 Identities=15% Similarity=0.012 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
+|+.+-.+|.+.|++++|+..++..++..- .++..|..+-.+|...|++++|...|++..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p-------------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 123 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDS-------------------NNEKGLSRRGEAHLAVNDFELARADFQKVL 123 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccc-------------------cchhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 566677788888888888888888877541 367778888888888888888888888775
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.27 E-value=0.074 Score=35.14 Aligned_cols=90 Identities=11% Similarity=0.055 Sum_probs=62.0
Q ss_pred HHHhCCHHHHHHHHHHHHhcC--------------CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDG--------------TNW-SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML 111 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g--------------~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~ 111 (225)
..+.|++++|+..|++..+.. +.| +...|..+-.++ .+.|++++|+..+
T Consensus 37 ~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----------------~~~~~~~~Ai~~~ 100 (169)
T d1ihga1 37 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACK----------------LKMSDWQGAVDSC 100 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHH----------------HHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHH----------------Hhhcccchhhhhh
Confidence 348899999998887654310 001 111222222233 4567777888888
Q ss_pred HHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 112 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.+..+.. +-+..+|..+-.+|.+.|++++|...|.+..+..
T Consensus 101 ~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 101 LEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 8777642 2377889999999999999999999999998863
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.12 E-value=0.057 Score=35.25 Aligned_cols=96 Identities=17% Similarity=0.047 Sum_probs=66.0
Q ss_pred HHHhCCHHHHHHHHHHHHhcC-CCC----------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045820 47 KIKASPLKERIDIFNSIKKDG-TNW----------SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g-~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~ 115 (225)
.+..|++++|+..|++-.+.. -.| ....|+.+-.+|.+.|+++.|..-++ +|++++.+..
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~---------~al~~~~~~~ 89 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD---------KALHYFNRRG 89 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH---------HHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhh---------hhhhcccccc
Confidence 347899999999998875431 111 13568888888988888888766444 4455555443
Q ss_pred hCCCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 116 NDGLK--P-DVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 116 ~~g~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
..... | ....|+.+-.+|.+.|++++|...|++..+
T Consensus 90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 1 123577788999999999999999998764
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.06 E-value=0.089 Score=34.20 Aligned_cols=90 Identities=17% Similarity=-0.050 Sum_probs=63.6
Q ss_pred HHHhCCHHHHHHHHHHHHhcC----CCCCh-----------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDG----TNWSV-----------SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML 111 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g----~~~~~-----------~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~ 111 (225)
.++.|++.+|+..|.+..+.- ..++. .+|+.+-.+| .+.|++++|.+.+
T Consensus 27 ~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~----------------~~l~~~~~Al~~~ 90 (153)
T d2fbna1 27 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCY----------------NKNKDYPKAIDHA 90 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHH----------------HHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHH----------------HHhcccchhhhhh
Confidence 458999999999998765431 11121 1233333333 4556777777777
Q ss_pred HHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 112 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.+..+.. +.++.+|..+..+|...|++++|...|++..+..
T Consensus 91 ~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 91 SKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred hcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7766532 3478899999999999999999999999988764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.01 E-value=0.059 Score=35.17 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=50.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERG-----VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 197 (225)
...|+.+-.+|.+.|++++|..-+++..+.. ..++... .....|+.+-.+|...|++++|+.
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~-------------~~~~a~~~~g~~~~~lg~~eeA~~ 121 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK-------------LWISAVYSRALALDGLGRGAEAMP 121 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH-------------HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc-------------hhHHHHhhhHHHHHHHHHHHHHHH
Confidence 4578899999999999999999998876531 1111000 012356777899999999999999
Q ss_pred HHHHHHh
Q 045820 198 LLFLMYE 204 (225)
Q Consensus 198 ~~~~m~~ 204 (225)
.|++..+
T Consensus 122 ~~~~Al~ 128 (156)
T d2hr2a1 122 EFKKVVE 128 (156)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=95.99 E-value=0.1 Score=34.39 Aligned_cols=53 Identities=9% Similarity=-0.059 Sum_probs=33.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.+.|++++|+..+++..... +.+..+|..+-.+|...|++++|...|.+..+.
T Consensus 75 ~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 75 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44566677776666665532 235556666666667777777777776666653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.87 E-value=0.22 Score=37.08 Aligned_cols=162 Identities=13% Similarity=0.055 Sum_probs=91.2
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhhhHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH--
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA-- 91 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a-- 91 (225)
.+.+.|.+.|.++.|..++..+.. +..++.+ ++.++++.|.+++.... +..+|..+..+|.+......+
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~d--~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~la~i 90 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVSN--FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQM 90 (336)
T ss_dssp ----------CTTTHHHHHHHTTC--HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC--HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHHHHHH
Confidence 556677799999999888875544 4555543 47788888877765332 566888888888776544333
Q ss_pred ------------HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 045820 92 ------------VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159 (225)
Q Consensus 92 ------------~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 159 (225)
..+....-..|.+++...++...... -.++...++-++..|++.+. .++.+.++..+-..|..
T Consensus 91 ~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~----~kl~e~l~~~s~~y~~~ 165 (336)
T d1b89a_ 91 CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP----QKMREHLELFWSRVNIP 165 (336)
T ss_dssp TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH----HHHHHHHHHHSTTSCHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh----HHHHHHHHhccccCCHH
Confidence 22333335678888888888876532 24566778888889998763 34444444432222222
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 045820 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197 (225)
Q Consensus 160 t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 197 (225)
.- ++.++. ...|.-++.-|.+.|++++|..
T Consensus 166 k~---~~~c~~-----~~l~~elv~Ly~~~~~~~~A~~ 195 (336)
T d1b89a_ 166 KV---LRAAEQ-----AHLWAELVFLYDKYEEYDNAII 195 (336)
T ss_dssp HH---HHHHHT-----TTCHHHHHHHHHHTTCHHHHHH
T ss_pred HH---HHHHHH-----cCChHHHHHHHHhcCCHHHHHH
Confidence 11 111111 1235566677777777776543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=95.84 E-value=0.12 Score=34.01 Aligned_cols=61 Identities=11% Similarity=0.026 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.|+.+-.+|.+.|++++|...+++..+..- .+...|..+..+|...|++++|...|+...+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-------------------~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDS-------------------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhccc-------------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666677778888888888877776432 4566777777777777888888777777765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.73 E-value=0.23 Score=36.34 Aligned_cols=143 Identities=12% Similarity=-0.020 Sum_probs=89.0
Q ss_pred HhCC-HHHHHHHHHHHHhcCCCCChh-hHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 045820 49 KASP-LKERIDIFNSIKKDGTNWSVS-DFNDL---LMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDV 123 (225)
Q Consensus 49 ~~~~-~~~a~~~~~~m~~~g~~~~~~-~~~~l---i~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 123 (225)
..+. .++|+.+++...+. .|+.. .|+.. +......+... ...|.+++|+.+++...... +-+.
T Consensus 40 ~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~---------~~~~~~~~al~~~~~~l~~~-pk~~ 107 (334)
T d1dcea1 40 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPE---------ESAALVKAELGFLESCLRVN-PKSY 107 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHH---------HHHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred hcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchH---------HHHHHHHHHHHHHHHHHHhC-CCcH
Confidence 4443 58999999998875 45543 35443 33333333332 34466777888888876532 2356
Q ss_pred HhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHH-HHHHccCcHHHHHHHHH
Q 045820 124 YTYTAIMDGFCKVG--RSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVI-QALCGVGKIHKALLLLF 200 (225)
Q Consensus 124 ~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li-~~~~~~g~~~~a~~~~~ 200 (225)
..|.....++...+ ++++|...+.++.+... ++...+...+ ..+...+..++|...++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~Al~~~~ 168 (334)
T d1dcea1 108 GTWHHRCWLLSRLPEPNWARELELCARFLEADE-------------------RNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (334)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-------------------hhhhhhhhHHHHHHHhccccHHHHHHHH
Confidence 66777766776665 47888888888877532 3445554443 56666788888888888
Q ss_pred HHHhcCCCCCHHHHHHHHHHhhc
Q 045820 201 LMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 201 ~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
...+... -+...|+.+-..+.+
T Consensus 169 ~~i~~~p-~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 169 SLITRNF-SNYSSWHYRSCLLPQ 190 (334)
T ss_dssp TTTTTTC-CCHHHHHHHHHHHHH
T ss_pred HHHHcCC-CCHHHHHHHHHHHHH
Confidence 7776532 245566655554443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.27 E-value=0.12 Score=40.61 Aligned_cols=100 Identities=9% Similarity=-0.033 Sum_probs=66.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
+.|+.+.|...+..... ++ ..++..+-..+...|++++|...|.+..+..- -+...
T Consensus 132 ~~~~~~~A~~~~~~al~----~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-------------------~~~~~ 188 (497)
T d1ya0a1 132 KQTHTSAIVKPQSSSCS----YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-------------------SNGQP 188 (497)
T ss_dssp -----------CCHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TBSHH
T ss_pred hCCCHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-------------------CchHH
Confidence 34455555544443321 21 24677788888999999999999999887642 34578
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
|+.|-..|...|+..+|...|.+..... .|-..++..|...|.+
T Consensus 189 ~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 189 YNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 9999999999999999999998887643 5677788888776653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.19 E-value=0.054 Score=35.05 Aligned_cols=99 Identities=13% Similarity=0.041 Sum_probs=68.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhh
Q 045820 101 VGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKV----------GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~----------g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~ 169 (225)
.+.+++|.+.|+...+. .| +..++..+-.+|.+. +.+++|...|++..+..-
T Consensus 10 ~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P--------------- 72 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--------------- 72 (145)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT---------------
T ss_pred HccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc---------------
Confidence 35678888888888764 45 666777777677654 345778888888876542
Q ss_pred cCCCCCHHHHHHHHHHHHccC-----------cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 045820 170 MGHIPRTITFNNVIQALCGVG-----------KIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 170 ~~~~p~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 222 (225)
-+..+|..+-.+|...| .+++|.+.|+...+ +.|+...|..-+..+.
T Consensus 73 ----~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 73 ----KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 130 (145)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred ----hhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHHH
Confidence 35567777766666543 36788888888876 4688877777665543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.2 Score=29.50 Aligned_cols=76 Identities=13% Similarity=0.042 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
+--+-..+.+.|++++|...|++..+.... .....+ ...+++.+-.+|.+.|++++|...+++..+
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~-------------~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDE-------------GEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-------------TCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhh-------------hhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 334567889999999999999987653210 000012 246788999999999999999999999987
Q ss_pred cCCCCC-HHHHHH
Q 045820 205 HGKIPS-RTSHDM 216 (225)
Q Consensus 205 ~g~~p~-~~~~~~ 216 (225)
. .|+ ..+++.
T Consensus 75 l--~P~~~~a~~N 85 (95)
T d1tjca_ 75 L--DPEHQRANGN 85 (95)
T ss_dssp H--CTTCHHHHHH
T ss_pred h--CcCCHHHHHH
Confidence 4 455 334433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.69 E-value=1.3 Score=32.61 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=80.9
Q ss_pred hhcchhhcCcchhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHH
Q 045820 27 AESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE 105 (225)
Q Consensus 27 ~~a~~~~~~~~~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~ 105 (225)
.+..+++..++......+...| +.|.++.|..+|..+. -|..++..+.+.++++.|.+++... +..+
T Consensus 3 ~~~e~fl~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~---~~~~ 70 (336)
T d1b89a_ 3 AELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA---NSTR 70 (336)
T ss_dssp HHHTTTTTCC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH---TCHH
T ss_pred hhHHHHHcCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc---CCHH
Confidence 4455666667776777777777 8999999999998654 3667778888888888877776654 2222
Q ss_pred HHHHHHHH-----------HhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCC
Q 045820 106 EAYEMLMN-----------VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174 (225)
Q Consensus 106 ~a~~~~~~-----------m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p 174 (225)
--.++... +...+...+......++..|-..|.+++...+++...... ..
T Consensus 71 ~~k~~~~~l~~~~e~~la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-------------------~~ 131 (336)
T d1b89a_ 71 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-------------------RA 131 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-------------------TC
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-------------------cc
Confidence 11111111 1122233455555678888888888888888888654321 16
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHH
Q 045820 175 RTITFNNVIQALCGVGKIHKALLLL 199 (225)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~a~~~~ 199 (225)
+...++-++..|++.+. ++-.+.+
T Consensus 132 ~~~~~~~L~~lyak~~~-~kl~e~l 155 (336)
T d1b89a_ 132 HMGMFTELAILYSKFKP-QKMREHL 155 (336)
T ss_dssp CHHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred chHHHHHHHHHHHHhCh-HHHHHHH
Confidence 77788999999999864 4433333
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.48 E-value=0.57 Score=27.82 Aligned_cols=62 Identities=10% Similarity=0.063 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
|.-+..+-++.+......|+.....+.+.||.|..++..|.++|+-.+...- ++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~-~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CcHHHHHHHH
Confidence 5566777778888888999999999999999999999999999998885432 2233444444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.72 E-value=0.22 Score=39.04 Aligned_cols=95 Identities=12% Similarity=-0.023 Sum_probs=55.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHH----------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNH----------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGF 133 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~----------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~ 133 (225)
+...+..+-..+.+.|+.+.|...+... ...|++++|...|.+..+. .| +...|+.+-..|
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILA 196 (497)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 4445666666666777766665433221 6679999999999998763 56 557899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh
Q 045820 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168 (225)
Q Consensus 134 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~ 168 (225)
...|+..+|...|.+..... .|-..++..|...+
T Consensus 197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 99999999999999988765 35666777776443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.8 Score=26.64 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=27.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+++.+-.+|.+.|++++|...+++..+..
T Consensus 46 ~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 4678999999999999999999999998764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=88.60 E-value=1.8 Score=27.11 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=73.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 045820 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVS-DFNDLLMALVMLNEQD-TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP 121 (225)
Q Consensus 44 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~~~~~-~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p 121 (225)
+.+.+..-+-+....+++.+-+. +..+.- -.-.++..++..+... -+-..++-+...|.-+.-.+++..+.+.+ +|
T Consensus 41 ICNiidt~dC~~v~~~Ld~IG~~-FDls~C~Nlk~vv~C~~~~n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i 118 (161)
T d1wy6a1 41 ICNLLESIDCRYMFQVLDKIGSY-FDLDKCQNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EV 118 (161)
T ss_dssp HHHHHHHCCHHHHHHHHHHHGGG-SCGGGCSCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CS
T ss_pred eeecccccchHHHHHHHHHHhhh-cCchhhhcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CC
Confidence 34444555555555555554322 222211 1456778888876532 22223444467889999999999976544 67
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 155 (225)
+....-.+-.||.+.|...++.+++.+.-+.|++
T Consensus 119 ~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 119 SASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 7777778899999999999999999999999986
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=88.27 E-value=1.8 Score=26.71 Aligned_cols=112 Identities=10% Similarity=-0.064 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 130 (225)
.++++|+..|++-.+.|.. ..+..|. .....+ .++|.+++.+..+.| +...+..+-
T Consensus 7 kd~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~----------------~~~a~~~~~~aa~~g---~~~a~~~Lg 62 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEM---FGCLSLV--SNSQIN----------------KQKLFQYLSKACELN---SGNGCRFLG 62 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSC----------------HHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCh---hhhhhhc--cccccC----------------HHHHHHHHhhhhccc---chhhhhhHH
Confidence 3678899999888777632 2232232 122233 444555555444443 222222222
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHH
Q 045820 131 DGFCK----VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG----VGKIHKALLLLFLM 202 (225)
Q Consensus 131 ~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m 202 (225)
..|.. ..+.++|.++|++..+.|.. .....|-..|.. ..+.++|.++|+..
T Consensus 63 ~~y~~g~~~~~d~~~A~~~~~~aa~~g~~---------------------~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~A 121 (133)
T d1klxa_ 63 DFYENGKYVKKDLRKAAQYYSKACGLNDQ---------------------DGCLILGYKQYAGKGVVKNEKQAVKTFEKA 121 (133)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HhhhhccccchhhHHHHHHHhhhhccCcc---------------------hHHHHHHHHHHcCCccCCCHHHHHHHHHHH
Confidence 23332 34688899999988887642 222223233332 35688888888888
Q ss_pred HhcCC
Q 045820 203 YEHGK 207 (225)
Q Consensus 203 ~~~g~ 207 (225)
.+.|.
T Consensus 122 a~~G~ 126 (133)
T d1klxa_ 122 CRLGS 126 (133)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 87764
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.42 E-value=2 Score=25.38 Aligned_cols=47 Identities=17% Similarity=-0.013 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 52 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
+.-+..+-++.+....+-|++.+..+.+.||-+.+|+..|.++|+..
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~v 67 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 67 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44456666777777789999999999999998888888888888766
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.49 E-value=1 Score=30.62 Aligned_cols=48 Identities=10% Similarity=-0.131 Sum_probs=30.2
Q ss_pred HhhhcCCCCCChhhcchhhcC-------cchhhhHHHHHHHHhCCHHHHHHHHHH
Q 045820 15 LLVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKIKASPLKERIDIFNS 62 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~-------~~~~~~~~l~~~~~~~~~~~a~~~~~~ 62 (225)
.++...+..|+.+...+++.. .+..+..++..++..|+.+-..-+.+.
T Consensus 5 ~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~ 59 (223)
T d1uoha_ 5 LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 59 (223)
T ss_dssp SHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccc
Confidence 344455677787776665543 344567788888888887665544443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=82.10 E-value=3.8 Score=25.06 Aligned_cols=88 Identities=8% Similarity=-0.088 Sum_probs=47.8
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 128 (225)
...+.++|+..++.-.+.| ++..+..|=..|.. |. ....+.++|.++|.+-.+.|. ......
T Consensus 35 ~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~-g~-----------~~~~d~~~A~~~~~~aa~~g~---~~a~~~ 96 (133)
T d1klxa_ 35 SQINKQKLFQYLSKACELN---SGNGCRFLGDFYEN-GK-----------YVKKDLRKAAQYYSKACGLND---QDGCLI 96 (133)
T ss_dssp TTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH-CS-----------SSCCCHHHHHHHHHHHHHTTC---HHHHHH
T ss_pred cccCHHHHHHHHhhhhccc---chhhhhhHHHhhhh-cc-----------ccchhhHHHHHHHhhhhccCc---chHHHH
Confidence 3456777777777766665 33333333333332 11 123455666666666655442 223333
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 045820 129 IMDGFCK----VGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 129 ll~~~~~----~g~~~~a~~~~~~m~~~g~ 154 (225)
|-..|.. ..+.++|..+|++..+.|.
T Consensus 97 Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 97 LGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 3333433 3578888888888877775
|