Citrus Sinensis ID: 045842

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-----

MSLKEILPPVKSNHASFYDHSNDMWFKNLYNSSEKEKSLEAKRKPVPPYLKRQGFVPRKIEDFGDGGAFPEIHIGQYPLDMGRNKSGKPGSNILPVSVDAHGNVAYDAIVKQNENSKKIVYSQHKDLIPKFLRNDEEEEETDEEMQREIDETTQETKACLEKVVNVKLSAAQPKNVPQQSSDSKYIKYKPSQQSVAFNSGAKERVIRMMEMPVDPLEPPKFKHKRVPRASGSPPVPVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKLSEALYVAEQKAREAVAMRSKVQKEMLMKEKERKEQELRALAQKARSERTGAAPPASVPIPSEKSAMDTSDMREDYEHERERRRERDMPKETREEREERLQREKLRAERRRERERERRLEAKDAAMGKKSKITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDADDDMYGGNADEQMEKIMKTDRFKPDKGFAGSSERSGPRDRPVEFEKEAEEADPFGLDEFLTEVKKGGKKALDKVGTGGTMRASAGSSMRDDYGGSGFEFIKAVLSFEAFSLQASVDVFNSNDLSGTHIRRPSWFNAPTAPQPLIKRHVGGSETKKNCSRWACMLRGCASYSIIQFKSPTLSVSLPLRPSLSQPRLDSVIFMNLKDIGASAVSCYSGNKNHFFSWILFCLLPKFLGTPIAYVPFFLIKVVDRSPSSAFVLDNSGET

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHcccccccEEEcccccccccccccccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEcccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHccccccEEEEEccccEEEEcccccccccccccEEEEccccccccccEEEEccccccHHHHHHHHHHccccccccccccEEEEEEcccccccEEEccccccc

ccHHHHccccccccccccHHHccccccccccccccccEEEEEcccccccccccccccccHHHcccccccccEEEEEccccccccccccccccEEEEEEcccccEcHHHHHEcccccccEEEEcccccccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccEEcccHHHHccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHccccccccccccccEcHHHccccccccccccccccccccccccccccHHHHHHcccccccccHccccccHHHHHHHHHcccccccccccccccccccccccEEEEccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHEEHHHEEEEcEEEEEccccccccccccccccccccccccHHHccccccccccccHHHHHHHcccccEEEEEEccccEEEccccccccccccccEEEEEEHHHccccEEEEccccccHHHHHHHHHHcHHHccccEEEEcEEEEEEEccccccEEEEcccccc

mslkeilppvksnhasfydhsndmwfknlYNSSEKEKsleakrkpvppylkrqgfvprkiedfgdggafpeihigqypldmgrnksgkpgsnilpvsvdahgnvAYDAIVKQNENSKKIVYSQHKDLipkflrndeeeeetDEEMQREIDETTQETKACLEKVVNVKlsaaqpknvpqqssdskyikykpsqqsvafnSGAKERVIRMmempvdpleppkfkhkrvprasgsppvpvmhspprpvtvkdqqdwkippcisnwknpkgytipldkrlaadgrglqdvqINDNFAKLSEALYVAEQKAREAVAMRSKVQKEMLMKEKERKEQELRALAQKARsertgaappasvpipseksamdtsdmrEDYEHERErrrerdmpkeTREEREERLQREKLRAERRRERERERRLEAKDAamgkkskitrdrdRDISEKFALGMAstgaarggevmydqrlfnqekgmdsgfatddqynvydkglftaqptlstlyrpkkdadddmyggnaDEQMEKIMktdrfkpdkgfagssersgprdrpvefekeaeeadpfglDEFLTEVKKGGKKAldkvgtggtmrasagssmrddyggsGFEFIKAVLSFEAFSLQASVdvfnsndlsgthirrpswfnaptapqplikrhvggsetkkncsrwacmlrgcasysiiqfksptlsvslplrpslsqprldsVIFMNLKdigasavscysgnknhfFSWILFCLlpkflgtpiayVPFFLIKvvdrspssafvldnsget

mslkeilppvksnhasfydhsnDMWFKNLYNSSEKEksleakrkpvppylkrqgfvpRKIEDFGDGGAFPEIHIGQYPLDMGRNKSGKPGSNILPVSVDAHGNVAYDAIVKQnenskkivysqhkdlipkflrndeeeeetdeEMQREIDETTQETKACLEKVVNVklsaaqpknvpqqssdskyikykpsqqsvafnSGAKERVIRMMempvdpleppkfkhkrvprasgsppvpvmhspprpvtvkdqqdwkippcisnwknpkgyTIPLDKRLAADGRGLQDVQINDNFAKLSEALYVAEQKAREAVAMRSKVQKEMLMKEKERKEQELRALAQkarsertgaappasvpipseksamdtsdmredyehererrrerdmpketreereerlqreklraerrrerererrleakdaamgkkskitrdrdrdisEKFALgmastgaarggeVMYDQRLFNQEKGMDSGFATDDQYNVYDKGLftaqptlstlyrpkkdadddmYGGNADEQMEKImktdrfkpdkgfagssersgprdrpVEFEKeaeeadpfgldEFLTEVKKGgkkaldkvgtggtmrasagssmrdDYGGSGFEFIKAVLSFEAFSLQASVDVFNSNDLSGTHIRRPSWFNAPTapqplikrhvggsetkknCSRWACMLRGCASYSIIQFKSPTLSVSLPLRPSLSQPRLDSVIFMNLKDIGASAVSCYSGNKNHFFSWILFCLLPKFLGTPIAYVPFFLIKVVDrspssafvldnsget

MSLKEILPPVKSNHASFYDHSNDMWFKNLYNSSEKEKSLEAKRKPVPPYLKRQGFVPRKIEDFGDGGAFPEIHIGQYPLDMGRNKSGKPGSNILPVSVDAHGNVAYDAIVKQNENSKKIVYSQHKDLIPKFLRNdeeeeetdeemqreideTTQETKACLEKVVNVKLSAAQPKNVPQQSSDSKYIKYKPSQQSVAFNSGAKERVIRMMEMPVDPLEPPKFKHKRVPRAsgsppvpvmhspprpvTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKLSEALYVAEQKAREAVAMRSKVqkemlmkekerkeqelrALAQKARSERTGAAPPASVPIPSEKSAMDTSDMredyehererrrerDMPKetreereerlqreklraerrrerererrleAKDAAMGKKSKITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDADDDMYGGNADEQMEKIMKTDRFKPDKGFAGSSERSGPRDRPVEFEKEAEEADPFGLDEFLTEVKKGGKKALDKVGTGGTMRASAGSSMRDDYGGSGFEFIKAVLSFEAFSLQASVDVFNSNDLSGTHIRRPSWFNAPTAPQPLIKRHVGGSETKKNCSRWACMLRGCASYSIIQFKsptlsvslplrpslsqprlDSVIFMNLKDIGASAVSCYSGNKNHFFSWILFCLLPKFLGTPIAYVPFFLIKVVDRSPSSAFVLDNSGET

****************FYDHSNDMWFKNLY**********************QGFVPRKIEDFGDGGAFPEIHIGQYPL*************ILPVSVDAHGNVAYDAIVKQNENSKKIVYSQHKDLI***************************************************************************************************************************DWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKLSEALYVA******************************************************************************************************************************************************VMYDQRLF********GFATDDQYNVYDKGLFTAQPTLSTL**************************************************************************************************YGGSGFEFIKAVLSFEAFSLQASVDVFNSNDLSGTHIRRPSWFNAPTAPQPLIKRHVGGSETKKNCSRWACMLRGCASYSIIQFKSPTLSVSLPLR**LSQPRLDSVIFMNLKDIGASAVSCYSGNKNHFFSWILFCLLPKFLGTPIAYVPFFLIKVVDR**************

*SLKEILPPVKS************************************YLKRQGFVPRKIEDFGDGGAFPEIHIGQYPL*******************DAHGNVAYD******************DLIPK***********************QETKACLEKVV********************************************M************************************************CISNWKNPKGYTIPLDKRL*************DNFAKLSEALY**************************************************************************************************************************************************************L***************QYNVYDKGLFTAQPT*******************************************************EKEAEEADPFGL******************************************FIKAVLSFEAFSLQASVDVFNSNDLSGTHIRRPSWFNAPTAPQPLIKR*V******KNCSRWACMLRGCASYSIIQFKSPTLSVSLPLRPSLSQPRLDSVIFMNLKDIGASAVSCYSGNKNHFFSWILFCLLPKFLGTPIAYVPFFLIKVVDRSPSSAFVLDN****

MSLKEILPPVKSNHASFYDHSNDMWFKNLYNS*********KRKPVPPYLKRQGFVPRKIEDFGDGGAFPEIHIGQYPLDMGRNKSGKPGSNILPVSVDAHGNVAYDAIVKQNENSKKIVYSQHKDLIPKFLRND******************QETKACLEKVVNVKLSAA*************YIKYKPSQQSVAFNSGAKERVIRMMEMPVDPLEPPKFKHKRVPRASGSPPVPVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKLSEALYVAEQKAREAVAMRSKVQKEMLM******************************PIPS****************************************EKLR*****************************RDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDADDDMYGGNADEQMEKIMKTDRFKPD*************************ADPFGLDEFLTEVKKGGKKALDKVGTGGTMRASAGSSMRDDYGGSGFEFIKAVLSFEAFSLQASVDVFNSNDLSGTHIRRPSWFNAPTAPQPLIKRHVGGSETKKNCSRWACMLRGCASYSIIQFKSPTLSVSLPLRPSLSQPRLDSVIFMNLKDIGASAVSCYSGNKNHFFSWILFCLLPKFLGTPIAYVPFFLIKVVDRSPSSAFVLDNSGET

************************************KSLEAKRKPVPPYLKRQGFVPRKIEDFGDGGAFPEIHIGQYPLDMGRNK*GKPGSNILPVSVDAHGNVAYDAIVKQNENSKKIVYSQHKDLIPKFLR*****EETDEEMQREIDETTQETKACLEKVVNVKLSAAQPKN****SSDSKYIKYKPSQQSVAF*SGAKERVIRMMEMPVDPLEPPKFKHKRVPRASGSPPVPVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKLSEALYVAEQKAREAVAMRSKVQKEMLMKEKERKEQELRALAQKA********************************************************************************************RDISEKFALGMAST*******VMYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKK*******GGNADEQMEKI*KT******************RDRPVEFEKEAEEADPFGLDEFLTEVKK****************************GSGFEFIKAVLSFEAFSLQASVDVFNSNDLSGTHIRRPSWFNAPTAPQPLIKRHVGGSETKKNCSRWACMLRGCASYSIIQFKSPTLSVSLPLRPSLSQPRLDSVIFMNLKDIGASAVSCYSGNKNHFFSWILFCLLPKFLGTPIAYVPFFLIKVVDRSPSSA*********

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MSLKEILPPVKSNHASFYDHSNDMWFKNLYNSSEKEKSLEAKRKPVPPYLKRQGFVPRKIEDFGDGGAFPEIHIGQYPLDMGRNKSGKPGSNILPVSVDAHGNVAYDAIVKQNENSKKIVYSQHKDLIPKFLRNxxxxxxxxxxxxxxxxxxxxxTKACLEKVVNVKLSAAQPKNVPQQSSDSKYIKYKPSQQSVAFNSGAKERVIRMMEMPVDPLEPPKFKHKRVPRASGSPPVPVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKLSEALYVAEQKAREAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRTGAAPPASVPIPSEKSAMDTSDMREDYEHERERRRERDMPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAMGKKSKITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKKDADDDMYGGNADEQMEKIMKTDRFKPDKGFAGSSERSGPRDRPVEFEKEAEEADPFGLDEFLTEVKKGGKKALDKVGTGGTMRASAGSSMRDDYGGSGFEFIKAVLSFEAFSLQASVDVFNSNDLSGTHIRRPSWFNAPTAPQPLIKRHVGGSETKKNCSRWACMLRGCASYSIIQFKSPTLSVSLPLRPSLSQPRLDSVIFMNLKDIGASAVSCYSGNKNHFFSWILFCLLPKFLGTPIAYVPFFLIKVVDRSPSSAFVLDNSGET

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		765	2.2.26 [Sep-21-2011]
Q5R7R9		536	SNW domain-containing pro	yes	no	0.624	0.891	0.507	1e-130
Q1JQE0		536	SNW domain-containing pro	yes	no	0.624	0.891	0.507	1e-130
Q13573		536	SNW domain-containing pro	yes	no	0.624	0.891	0.505	1e-130
Q9CSN1		536	SNW domain-containing pro	yes	no	0.623	0.889	0.500	1e-128
P39736		547	Puff-specific protein Bx4	yes	no	0.684	0.957	0.460	1e-118
Q4WEH7		579	Pre-mRNA-processing prote	yes	no	0.649	0.858	0.441	2e-98
Q5AU50		583	Pre-mRNA-processing prote	yes	no	0.660	0.866	0.438	3e-98
Q22836		535	Uncharacterized protein T	yes	no	0.661	0.945	0.419	4e-98
Q09882		557	Pre-mRNA-processing prote	yes	no	0.639	0.877	0.428	2e-92
P54705		685	Protein snwA OS=Dictyoste	yes	no	0.380	0.424	0.481	2e-77

>sp\|Q5R7R9\|SNW1_PONAB SNW domain-containing protein 1 OS=Pongo abelii GN=SNW1 PE=2 SV=1	Back alignment and function desciption

 Score =  468 bits (1203), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 273/538 (50%), Positives = 361/538 (67%), Gaps = 60/538 (11%)

Query: 35  KEKSLEAKRKPVPPYLKRQGFVPRKIEDFGDGGAFPEIHIGQYPLDMGRNKSGKPGSNIL 94
           ++ SL + R+  PPY  R+G++PR +EDFGDGGAFPEIH+ QYPLDMGR K     SN L
Sbjct: 30  RQTSLVSSRREPPPYGYRKGWIPRLLEDFGDGGAFPEIHVAQYPLDMGRKKKM---SNAL 86

Query: 95  PVSVDAHGNVAYDAIVKQNENSKKIVYSQHKDLIPKFLRN--DEEEEETDEEMQREIDET 152
            + VD+ G + YDAI +Q ++  K++YS++ DL+PK + N  D + +  DEE    I E 
Sbjct: 87  AIQVDSEGKIKYDAIARQGQSKDKVIYSKYTDLVPKEVMNADDPDLQRPDEEA---IKEI 143

Query: 153 TQETKACLEKVVNVKLSAAQPKNVPQQSSDSKYIKYKPSQQSVAFNSGAKERVIRMMEMP 212
           T++T+  LEK V+ K++AA P     + + ++YI+Y PSQQ VAFNSGAK+RVIRM+EM 
Sbjct: 144 TEKTRVALEKSVSQKVAAAMPVRAADKLAPAQYIRYTPSQQGVAFNSGAKQRVIRMVEMQ 203

Query: 213 VDPLEPPKFK-HKRVPRASGSPPVPVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIP 271
            DP+EPP+FK +K++PR   SPP PVMHSP R VTVK+QQ+WKIPPCISNWKN KGYTIP
Sbjct: 204 KDPMEPPRFKINKKIPRGPPSPPAPVMHSPSRKVTVKEQQEWKIPPCISNWKNAKGYTIP 263

Query: 272 LDKRLAADGRGLQDVQINDNFAKLSEALYVAEQKAREAVAMRSKVQKEMLMKEKERKEQE 331
           LDKRLAADGRGLQ V IN+NFAKL+EALY+A++KAREAV MR++V+++M  KEKE+ E++
Sbjct: 264 LDKRLAADGRGLQTVHINENFAKLAEALYIADRKAREAVEMRAQVERKMAQKEKEKHEEK 323

Query: 332 LRALAQKARSERTGAAPPASVPIPSEKSAMDTSDMREDYEHERERRRERDMPKETREERE 391
           LR +AQKAR  R G               + T   +ED E      RERD          
Sbjct: 324 LREMAQKARERRAG---------------IKTHVEKEDGEA-----RERD---------- 353

Query: 392 ERLQREKLRAERRRERERERRLEAKDAAMGKKSKITRDRDRDISEKFALGMASTGAARGG 451
                 ++R +RR+ER+ +R L    AA  K+SK+ R+ +RDISE  ALG+ +   +   
Sbjct: 354 ------EIRHDRRKERQHDRNLSR--AAPDKRSKLQRNENRDISEVIALGVPNPRTS--N 403

Query: 452 EVMYDQRLFNQEKGMDSGFA--TDDQYNVYDKGLFTAQPTLSTLYRPKKDADDDMYGGNA 509
           EV YDQRLFNQ KGMDSGFA   D+ YNVYD+     +    ++YRP K+ D DMYG + 
Sbjct: 404 EVQYDQRLFNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMYGDD- 462

Query: 510 DEQMEKIMKTDRFKPDKGFAGSSERSGPRDRPVEFEKEAEEADPFGLDEFLTEVKKGG 567
              +E  +KT+RF PDK F+GS  R   R+ PV+FE+     DPFGLD+FL E K+ G
Sbjct: 463 ---LEARIKTNRFVPDKEFSGSDRRQRGREGPVQFEE-----DPFGLDKFLEEAKQHG 512

Involved in vitamin D-mediated transcription. Can function as a splicing factor in pre-mRNA splicing.
Pongo abelii (taxid: 9601)

>sp\|Q1JQE0\|SNW1_BOVIN SNW domain-containing protein 1 OS=Bos taurus GN=SNW1 PE=2 SV=1	Back alignment and function description

>sp\|Q13573\|SNW1_HUMAN SNW domain-containing protein 1 OS=Homo sapiens GN=SNW1 PE=1 SV=1	Back alignment and function description

>sp\|Q9CSN1\|SNW1_MOUSE SNW domain-containing protein 1 OS=Mus musculus GN=Snw1 PE=1 SV=3	Back alignment and function description

>sp\|P39736\|BX42_DROME Puff-specific protein Bx42 OS=Drosophila melanogaster GN=Bx42 PE=1 SV=1	Back alignment and function description

>sp\|Q4WEH7\|PRP45_ASPFU Pre-mRNA-processing protein 45 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=prp45 PE=3 SV=1	Back alignment and function description

>sp\|Q5AU50\|PRP45_EMENI Pre-mRNA-processing protein 45 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=prp45 PE=3 SV=1	Back alignment and function description

>sp\|Q22836\|YGH1_CAEEL Uncharacterized protein T27F2.1 OS=Caenorhabditis elegans GN=T27F2.1 PE=1 SV=1	Back alignment and function description

>sp\|Q09882\|PRP45_SCHPO Pre-mRNA-processing protein 45 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp45 PE=1 SV=1	Back alignment and function description

>sp\|P54705\|SNWA_DICDI Protein snwA OS=Dictyostelium discoideum GN=snwA PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		765
449443171		605	PREDICTED: SNW domain-containing protein	0.773	0.978	0.822	0.0
224114541		596	predicted protein [Populus trichocarpa]	0.755	0.969	0.806	0.0
224142193		611	predicted protein [Populus trichocarpa]	0.772	0.967	0.827	0.0
225445124		602	PREDICTED: SNW domain-containing protein	0.769	0.978	0.837	0.0
449463575		603	PREDICTED: puff-specific protein Bx42-li	0.771	0.978	0.817	0.0
357448543		613	SNW domain-containing protein [Medicago	0.769	0.960	0.790	0.0
351721162		612	GAMYB-binding protein [Glycine max] gi\|3	0.769	0.962	0.785	0.0
297842493		610	hypothetical protein ARALYDRAFT_476882 [	0.745	0.934	0.766	0.0
18411393		613	chromatin protein family [Arabidopsis th	0.762	0.951	0.747	0.0
51971076		613	unknown protein [Arabidopsis thaliana]	0.762	0.951	0.745	0.0

>gi\|449443171\|ref\|XP_004139354.1\| PREDICTED: SNW domain-containing protein 1-like [Cucumis sativus] gi\|449487951\|ref\|XP_004157882.1\| PREDICTED: SNW domain-containing protein 1-like isoform 1 [Cucumis sativus] gi\|449487953\|ref\|XP_004157883.1\| PREDICTED: SNW domain-containing protein 1-like isoform 2 [Cucumis sativus]	Back alignment and taxonomy information

 Score =  941 bits (2432), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/596 (82%), Positives = 540/596 (90%), Gaps = 4/596 (0%)

Query: 2   SLKEILPPVKSNHASFYDHSNDMWFKNLYNSSEKEKSLEAKRKPVPPYLKRQGFVPRKIE 61
           +LK++LP VKS   + YDHSND WFK  ++SSE E++   K  PVPPYLKR GFVPR++E
Sbjct: 3   TLKDLLPAVKSTTVTHYDHSNDPWFKQRFSSSEAEQTSVVKANPVPPYLKRSGFVPRRVE 62

Query: 62  DFGDGGAFPEIHIGQYPLDMGRNKSGKPGSNILPVSVDAHGNVAYDAIVKQNENSKKIVY 121
           DFGDGGAFPEIHI QYPLDMGR+KS KPGS ILPV+VDAHGNVAYDAIVKQNENSKKIVY
Sbjct: 63  DFGDGGAFPEIHIAQYPLDMGRDKSSKPGSKILPVTVDAHGNVAYDAIVKQNENSKKIVY 122

Query: 122 SQHKDLIPKFLRNDEEEEETDEEMQREIDETTQETKACLEKVVNVKLSAAQPKNVPQQSS 181
           SQHKDLIPK L+NDEE +E  E++Q+EIDETT+ETK+ LEK+VNV+LSAAQPKNV +QSS
Sbjct: 123 SQHKDLIPKILKNDEESDEG-EDLQKEIDETTEETKSALEKIVNVRLSAAQPKNVAKQSS 181

Query: 182 DSKYIKYKPSQQSVAFNSGAKERVIRMMEMPVDPLEPPKFKHKRVPRASGSPPVPVMHSP 241
           DSK+IKYKPSQQ+ AFNSGAKER+IRM+EMPVDPLEPPKFKHKRVP+ASGSPPVPVMHSP
Sbjct: 182 DSKFIKYKPSQQAAAFNSGAKERIIRMVEMPVDPLEPPKFKHKRVPKASGSPPVPVMHSP 241

Query: 242 PRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKLSEALYV 301
           PRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQ+VQINDNFAKLSEALYV
Sbjct: 242 PRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKLSEALYV 301

Query: 302 AEQKAREAVAMRSKVQKEMLMKEKERKEQELRALAQKARSERTGAAPPASVPIPSEKSAM 361
           AEQKAREAVAMRSKVQKEMLMK+KE+KE ELRALAQKARSERTGAAPP++V   SE+S +
Sbjct: 302 AEQKAREAVAMRSKVQKEMLMKQKEKKELELRALAQKARSERTGAAPPSAVHYSSERSTV 361

Query: 362 DTSDMREDYEHERERRRERDMPKETREEREERLQREKLRAERRRERERERRLEAKDAAMG 421
           D        E ER R +E+D+PKE+REEREERLQREK+R ERRRERERERRLEAKDAAMG
Sbjct: 362 DRDTSEISVEFERVREKEKDLPKESREEREERLQREKIREERRRERERERRLEAKDAAMG 421

Query: 422 KKSKITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFATDDQYNVYDK 481
           KKSKITRDRDRDISEK ALGMASTGA R GEVMYDQRLFNQ+KGMDSGFA DDQYN+YD+
Sbjct: 422 KKSKITRDRDRDISEKVALGMASTGAGREGEVMYDQRLFNQDKGMDSGFANDDQYNIYDR 481

Query: 482 GLFTAQPTLSTLYRPKKDADDDMYGGNADEQMEKIMKTDRFKPDKGFAGSSERSGPRDRP 541
           GLFTAQPTLSTLYRPKKDAD DMYGG ADEQ++KI KTDRFKPDK F+G+SERSGPRDRP
Sbjct: 482 GLFTAQPTLSTLYRPKKDADSDMYGG-ADEQLDKITKTDRFKPDKSFSGTSERSGPRDRP 540

Query: 542 VEFEKEAEEADPFGLDEFLTEVKKGGKKALDKVGTGGTMRASAGSSMRDDY-GGSG 596
           VEFE+E EEADPFGLD+FLTEVKK GKKA+DKVG+GGTMRAS GSS RD Y GGSG
Sbjct: 541 VEFEREVEEADPFGLDQFLTEVKK-GKKAMDKVGSGGTMRASGGSSTRDGYDGGSG 595

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224114541\|ref\|XP_002332355.1\| predicted protein [Populus trichocarpa] gi\|222832076\|gb\|EEE70553.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224142193\|ref\|XP_002324443.1\| predicted protein [Populus trichocarpa] gi\|222865877\|gb\|EEF03008.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225445124\|ref\|XP_002283858.1\| PREDICTED: SNW domain-containing protein 1-like isoform 1 [Vitis vinifera] gi\|359484551\|ref\|XP_003633120.1\| PREDICTED: SNW domain-containing protein 1-like isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449463575\|ref\|XP_004149509.1\| PREDICTED: puff-specific protein Bx42-like [Cucumis sativus] gi\|449523876\|ref\|XP_004168949.1\| PREDICTED: puff-specific protein Bx42-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357448543\|ref\|XP_003594547.1\| SNW domain-containing protein [Medicago truncatula] gi\|355483595\|gb\|AES64798.1\| SNW domain-containing protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|351721162\|ref\|NP_001237712.1\| GAMYB-binding protein [Glycine max] gi\|345128628\|gb\|AAZ38969.2\| GAMYB-binding protein [Glycine max]	Back alignment and taxonomy information

>gi\|297842493\|ref\|XP_002889128.1\| hypothetical protein ARALYDRAFT_476882 [Arabidopsis lyrata subsp. lyrata] gi\|297334969\|gb\|EFH65387.1\| hypothetical protein ARALYDRAFT_476882 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|18411393|ref|NP_565151.1| chromatin protein family [Arabidopsis thaliana] gi|79321384|ref|NP_001031291.1| chromatin protein family [Arabidopsis thaliana] gi|14423426|gb|AAK62395.1|AF386950_1 Putative nuclear protein [Arabidopsis thaliana] gi|3540201|gb|AAC34351.1| Putative nuclear protein [Arabidopsis thaliana] gi|16604362|gb|AAL24187.1| At1g77180/T14N5_5 [Arabidopsis thaliana] gi|20148383|gb|AAM10082.1| putative nuclear protein [Arabidopsis thaliana] gi|51969970|dbj|BAD43677.1| unknown protein [Arabidopsis thaliana] gi|51970534|dbj|BAD43959.1| unknown protein [Arabidopsis thaliana] gi|51970818|dbj|BAD44101.1| unknown protein [Arabidopsis thaliana] gi|51970968|dbj|BAD44176.1| unknown protein [Arabidopsis thaliana] gi|51971871|dbj|BAD44600.1| unknown protein [Arabidopsis thaliana] gi|62319875|dbj|BAD93926.1| hypothetical protein [Arabidopsis thaliana] gi|332197824|gb|AEE35945.1| chromatin protein family [Arabidopsis thaliana] gi|332197825|gb|AEE35946.1| chromatin protein family [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|51971076\|dbj\|BAD44230.1\| unknown protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		765
TAIR\|locus:2195970		613	SKIP "SNW/Ski-interacting prot	0.471	0.588	0.648	1.6e-193
UNIPROTKB\|Q1JQE0		536	SNW1 "SNW domain-containing pr	0.401	0.572	0.509	7.8e-114
UNIPROTKB\|J9P334		536	SNW1 "Uncharacterized protein"	0.401	0.572	0.509	7.8e-114
UNIPROTKB\|I3L897		536	SNW1 "Uncharacterized protein"	0.401	0.572	0.509	7.8e-114
UNIPROTKB\|Q13573		536	SNW1 "SNW domain-containing pr	0.401	0.572	0.506	1.3e-113
UNIPROTKB\|Q5R7R9		536	SNW1 "SNW domain-containing pr	0.401	0.572	0.506	1.3e-113
RGD\|1561926		536	Snw1 "SNW domain containing 1"	0.401	0.572	0.506	3.4e-113
UNIPROTKB\|F1NNJ3		538	SNW1 "Uncharacterized protein"	0.401	0.570	0.516	5.5e-113
UNIPROTKB\|E2RNF5		536	SNW1 "Uncharacterized protein"	0.401	0.572	0.506	8.9e-113
MGI\|MGI:1913604		536	Snw1 "SNW domain containing 1"	0.4	0.570	0.501	3e-112

TAIR\|locus:2195970 SKIP "SNW/Ski-interacting protein" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1178 (419.7 bits), Expect = 1.6e-193, Sum P(2) = 1.6e-193
 Identities = 238/367 (64%), Positives = 268/367 (73%)

Query:     2 SLKEILPPVKSNHASFYDHSNDMWFKNLYNSSEKEKSLEAKRKPVPPYLKRQGFVPRKIE 61
             SL + LP  KS   ++YDHSND WFKN    SE  KS   K K VP YL RQG  P+  E
Sbjct:     3 SLND-LPAPKSTTTTYYDHSNDAWFKNRVTESETVKSSSIKFKVVPAYLNRQGLRPKNPE 61

Query:    62 DFGDGGAFPEIHIGQYPLDMGRNKSGKPGSNILPVSVDAHGNVAYDAIVKQNENSKKIVY 121
             DFGDGGAFPEIH+ QYPL MG+NKS KPG+  LPV+VDA GNV +DAIV+QNENS+KIVY
Sbjct:    62 DFGDGGAFPEIHLPQYPLLMGKNKSNKPGAKTLPVTVDAQGNVVFDAIVRQNENSRKIVY 121

Query:   122 SQHKDLIPKFLRNXXXXXXXXXXXXXXXXX---TTQETKACLEKVVNVKLSAAQPKNVPQ 178
             SQHKD+IPKFL+N                    T +ETKA +EK+VNV+LSAAQP N+ +
Sbjct:   122 SQHKDIIPKFLKNEGDLGTVVDEEEELQKEIQETAEETKAAIEKIVNVRLSAAQPSNIAR 181

Query:   179 QSSDSKYIKYKPSQQSVAFNSGAKERVIRMMEMPVDPLEPPKFKHKRVPRAXXXXXXXXX 238
             QS DS+YIKYKPSQQS AFNSGAKER+IRM+EMPVDPL+PPKFKHKRVPRA         
Sbjct:   182 QSGDSQYIKYKPSQQSSAFNSGAKERIIRMVEMPVDPLDPPKFKHKRVPRASGSPPVPVM 241

Query:   239 XXXXXXXTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKLSEA 298
                    TVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKLSEA
Sbjct:   242 HSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKLSEA 301

Query:   299 LYVAEQKAREAVAMRSKVXXXXXXXXXXXXXXXXXALAQKARSERTGAAPPASVPIPSEK 358
             LYVAEQKAREAV+MRSKV                 ALAQKARSERTGAA   S+P+ S++
Sbjct:   302 LYVAEQKAREAVSMRSKVQKEMVMKDKERKEQELRALAQKARSERTGAA--MSMPVSSDR 359

Query:   359 SAMDTSD 365
                ++ D
Sbjct:   360 GRSESVD 366

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0008380 "RNA splicing" evidence=ISS;IMP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010555 "response to mannitol stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0042752 "regulation of circadian rhythm" evidence=IGI

UNIPROTKB\|Q1JQE0 SNW1 "SNW domain-containing protein 1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P334 SNW1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|I3L897 SNW1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q13573 SNW1 "SNW domain-containing protein 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5R7R9 SNW1 "SNW domain-containing protein 1" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

RGD\|1561926 Snw1 "SNW domain containing 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NNJ3 SNW1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RNF5 SNW1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1913604 Snw1 "SNW domain containing 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q13573	SNW1_HUMAN	No assigned EC number	0.5055	0.6248	0.8917	yes	no
Q9CSN1	SNW1_MOUSE	No assigned EC number	0.5009	0.6235	0.8899	yes	no
Q1JQE0	SNW1_BOVIN	No assigned EC number	0.5074	0.6248	0.8917	yes	no
Q5R7R9	SNW1_PONAB	No assigned EC number	0.5074	0.6248	0.8917	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_scaffold_211000011	hypothetical protein (596 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_IV2251	hypothetical protein (909 aa)	•	•	•	0.513
	estExt_Genewise1_v1.C_LG_X3939	SubName- Full=Putative uncharacterized protein; (480 aa)	•	•	•	0.480
	eugene3.00440042	hypothetical protein (2357 aa)	•	•		0.454

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		765
pfam02731		158	pfam02731, SKIP_SNW, SKIP/SNW domain	1e-84
PRK12678		672	PRK12678, PRK12678, transcription termination fact	3e-04
PRK05035		695	PRK05035, PRK05035, electron transport complex pro	6e-04
TIGR02680		1353	TIGR02680, TIGR02680, TIGR02680 family protein	0.001
PRK13831		432	PRK13831, PRK13831, conjugal transfer protein TrbI	0.003
pfam08648		158	pfam08648, DUF1777, Protein of unknown function (D	0.004

>gnl\|CDD\|217206 pfam02731, SKIP_SNW, SKIP/SNW domain	Back alignment and domain information

 Score =  264 bits (678), Expect = 1e-84
 Identities = 107/161 (66%), Positives = 135/161 (83%), Gaps = 3/161 (1%)

Query: 183 SKYIKYKPSQQSVAFNSGAKERVIRMMEMPVDPLEPPKFKHKRVPRASGSPPVPVMHSPP 242
           ++YIKY PS Q+ A NS   +R+I+++E   DPLEPPKFKHK+VPR   SPP P++HSPP
Sbjct: 1   AQYIKYTPSNQTGAENS---QRIIKVVEKQQDPLEPPKFKHKKVPRGPPSPPPPILHSPP 57

Query: 243 RPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKLSEALYVA 302
           R +T +DQ+DWKIPP ISNWKNPKGYTIPLDKR+AADGRGLQDV+IND FAKLSEALY+A
Sbjct: 58  RKLTKEDQEDWKIPPAISNWKNPKGYTIPLDKRVAADGRGLQDVEINDKFAKLSEALYIA 117

Query: 303 EQKAREAVAMRSKVQKEMLMKEKERKEQELRALAQKARSER 343
           E+KARE V  R+++Q+++  KEK+ KE++LR LAQ+AR ER
Sbjct: 118 ERKAREEVRQRAELQRQLAEKEKQEKEEKLRELAQRAREER 158

This domain is found in chromatin proteins. Length = 158

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	Back alignment and domain information

>gnl\|CDD\|233973 TIGR02680, TIGR02680, TIGR02680 family protein	Back alignment and domain information

>gnl\|CDD\|172358 PRK13831, PRK13831, conjugal transfer protein TrbI; Provisional	Back alignment and domain information

>gnl\|CDD\|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		765
KOG2441		506	consensus mRNA splicing factor/probable chromatin	100.0
PF02731		158	SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKI	100.0
PTZ00266		1021	NIMA-related protein kinase; Provisional	93.12
PTZ00266		1021	NIMA-related protein kinase; Provisional	91.2
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	90.34
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	88.93

>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]	Back alignment and domain information

Probab=100.00  E-value=5.1e-178  Score=1392.67  Aligned_cols=503  Identities=59%  Similarity=0.957  Sum_probs=466.7

Q ss_pred             CCccccCCCCccCCcccccccchhhhhhccCcchhccccccccCCCCCccccCCCccCCcccCCCCCCCCccccccCCCc
Q 045842            1 MSLKEILPPVKSNHASFYDHSNDMWFKNLYNSSEKEKSLEAKRKPVPPYLKRQGFVPRKIEDFGDGGAFPEIHIGQYPLD   80 (765)
Q Consensus         1 ~sl~~~LPaP~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~PpYg~R~gw~Pr~~eDFgDGGAFPEIhvAQYPL~   80 (765)
                      |.|.+.||+|++..+.++|++++   ..+.+++  ++..++  +.+||||+|+||+||.+|||||||||||||||||||+
T Consensus         1 m~l~~~~pap~~~~~~~~~~~~d---~~r~~~~--~~~~~s--~~~ppyg~Rkg~~pr~pEDFGDGGAFPEihvaqyPl~   73 (506)
T KOG2441|consen    1 MKLLSDLPAPKSTTTDYYDHEED---KNRVTES--ETVLVS--SEPPPYGYRKGWRPRLPEDFGDGGAFPEIHVAQYPLD   73 (506)
T ss_pred             CcccccCCCCCCCCchHHHHhhh---hccccch--hhhhhc--CCCCccccccCcccCChhhccCCCccchhhhhcCCcc
Confidence            78999999999999999988876   2333333  233333  4899999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcceEEeCCCCCcchHHHHhhccCCCceeecccCCcccccccCCCcccccCcCCHHHHHHHHHHHHHHH
Q 045842           81 MGRNKSGKPGSNILPVSVDAHGNVAYDAIVKQNENSKKIVYSQHKDLIPKFLRNDEEEEETDEEMQREIDETTQETKACL  160 (765)
Q Consensus        81 MG~k~~~~~~sn~lalqvD~~GkV~YDaIarqG~~~~kiV~Ss~~DlIPlr~r~~~~~~~l~rPseEei~etterTK~AL  160 (765)
                      ||++++   .+|+|+||||.+|+|.||+||||||++++||||+|.||||+++.+ +.+.++++|++++|+|||++||.||
T Consensus        74 mg~~k~---~s~aLa~qv~seg~i~~DaIarqg~~~~kvvysk~~DliPk~~~n-~~d~d~~~p~~~~iqE~tekTk~al  149 (506)
T KOG2441|consen   74 MGRQKK---VSNALALQVDSEGAILYDAIARQGHSKDKVVYSKLDDLIPKRQSN-EDDSDLQKPDDEEIQECTEKTKSAL  149 (506)
T ss_pred             ccccCc---cccccceeeccccchhhHHHHhccccccceeeehhhhhcchhhhc-cCCccccCCcHHHHHHHHHHHHHHH
Confidence            999765   899999999999999999999999999999999999999999986 4556899999999999999999999


Q ss_pred             HHHHhhhhhccCCCCcCCCCCCCceEEeccCCccccccCCCcceEEEeeeccCCCCCCCcccc-cCCCCCCCCCCCCccc
Q 045842          161 EKVVNVKLSAAQPKNVPQQSSDSKYIKYKPSQQSVAFNSGAKERVIRMMEMPVDPLEPPKFKH-KRVPRASGSPPVPVMH  239 (765)
Q Consensus       161 Ekll~~Ki~aa~pk~~~~~~~~~~yIrYTPsqq~~~fnsg~~qRIIkmvE~q~DPLePPkFK~-KKipr~ppSPP~PVLH  239 (765)
                      |||||.|+++++|.+++.+.++++||||||+||++  |+|++||||+||++|+|||+||+||| ||||++|||||+||||
T Consensus       150 eKiVn~klA~a~P~~~a~q~a~s~YIrytpsqq~~--~sg~kqriIrmVe~q~DPmePpkfk~nkkiprappsppvPVmH  227 (506)
T KOG2441|consen  150 EKIVNAKLAAAQPSRIADQRADSQYIRYTPSQQAG--NSGSKQRIIRMVEMQKDPMEPPKFKINKKIPRAPPSPPVPVMH  227 (506)
T ss_pred             HHHHHHHHhhccchhhhhccCCcceeeecccchhh--hhcchhhhhhhhhcccCCCCCcccccccccCCCCCCCCCCccc
Confidence            99999999999999999999999999999999987  79999999999999999999999997 9999999999999999


Q ss_pred             CCCCCCCccccccccCCCccccCCCCCCcccccchhhhhcCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842          240 SPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKLSEALYVAEQKAREAVAMRSKVQKE  319 (765)
Q Consensus       240 SPpRKlTkeEQq~WkIPPcISNWKNpKGYTIpLDKRLAADGRgLq~v~INDkFA~LSEALyiADrkAREEV~~Rae~qk~  319 (765)
                      |||||+|++||++||||||||||||||||||||||||||||||||+||||||||+||||||+||++|||||++|++|+++
T Consensus       228 sp~rk~t~kdqqdWKIPp~ISNWKNpkGYTipLdkRlaadgrglq~v~INdnFaKlseALy~adrKAReeV~~ra~~~r~  307 (506)
T KOG2441|consen  228 SPSRKMTAKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVHINDNFAKLSEALYIADRKAREEVRMRAQLERK  307 (506)
T ss_pred             CCCccccccccccccCCchhhcCcCCCCceecchhhhhhccCCcccceecccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccccccccccchhhhhhhhhhccCCCccchHHHHHHHHHHHH
Q 045842          320 MLMKEKERKEQELRALAQKARSERTGAAPPASVPIPSEKSAMDTSDMREDYEHERERRRERDMPKETREEREERLQREKL  399 (765)
Q Consensus       320 la~KEKe~KEEkLR~LAqkAReER~g~~~~~~~~~~~~~~~~~~~~~~~~y~~d~~~~~~~~~~~~~~e~~e~~reRe~i  399 (765)
                      +++|||++||++||+||||||++|+|...+                                   ..++++.+++.|++|
T Consensus       308 ma~kek~~kE~kL~elAQkAR~~r~g~~~~-----------------------------------~~~ked~e~~~R~ei  352 (506)
T KOG2441|consen  308 MAEKEKEEKEQKLRELAQKAREERGGPQTG-----------------------------------AIEKEDREARTREEI  352 (506)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccc-----------------------------------ccccchhHHHHHHHH
Confidence            999999999999999999999999986542                                   123345667779999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcchhhhhhccCCCchhhhhcCCCcCCCCCCCcccchhhhhccccCCCCCCCCCcccccc
Q 045842          400 RAERRRERERERRLEAKDAAMGKKSKITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFATDDQYNVY  479 (765)
Q Consensus       400 R~ERrRErERE~Rlsr~g~~e~K~~klaReq~RDISEKIALG~Ak~t~~~s~E~~yDsRLFNQs~G~dSGFgdDD~YNVY  479 (765)
                      |++|++|+|+++++++|++  +|++||+|+++||||||||||+|+++  .++|+|||||||||++||+|||++||+||||
T Consensus       353 R~~Rrke~~~~~nlsra~~--dKrsKl~r~r~RDiSEkIaLG~~~~~--~~~e~qyDqRlFnq~~g~dSg~~~dd~ynvY  428 (506)
T KOG2441|consen  353 RRDRRKEREKDRNLSRAAP--DKRSKLQRDRGRDISEKIALGLAKPS--ESGEVQYDQRLFNQGKGLDSGFADDDEYNVY  428 (506)
T ss_pred             HHHHHHHHHHhhhhhhhcc--chhhhhhhccCcchHhhhhhccCCCC--CCCcchhhHHhhhcccCcccccccccccccc
Confidence            9999999999999999997  79999999999999999999999998  8999999999999999999999999999999


Q ss_pred             CccccCCCccccccccCCCCCCccccCCCchHHHHHHhhc-CcCCCCCCCCCCCCCCCCCCCCeeeecccccCCCchhhh
Q 045842          480 DKGLFTAQPTLSTLYRPKKDADDDMYGGNADEQMEKIMKT-DRFKPDKGFAGSSERSGPRDRPVEFEKEAEEADPFGLDE  558 (765)
Q Consensus       480 DKPLF~~q~a~~sIYRP~~~~d~d~~gg~~~e~iek~~kt-~RF~~~kgF~Gad~~~~~R~gPVqFEKd~~~~DPFGld~  558 (765)
                      |+|||++++ +++||||+++.++++||.   .+++.++++ .||+++|+|+|+|..+++ +|||||||     |||||| 
T Consensus       429 D~~wr~~q~-~~siYrp~k~ld~e~yg~---~el~~~i~~~~rf~~dk~f~gsd~~~~~-~gPV~FEk-----Dpfg~~-  497 (506)
T KOG2441|consen  429 DKPWRGAQD-ISSIYRPSKNLDDEVYGV---DELESIIKGPNRFVADKSFSGSDERVRS-DGPVQFEK-----DPFGLD-  497 (506)
T ss_pred             ccccccCCc-hhhhhCCCccchhhhhcc---hhhhhhccCccccccccccccccccccC-CCCceecc-----CCcccc-
Confidence            999999999 799999999999999964   356666654 999999999999985555 99999996     799999 


Q ss_pred             hhHHHHhcC
Q 045842          559 FLTEVKKGG  567 (765)
Q Consensus       559 fL~eaKk~~  567 (765)
                       |+++|+++
T Consensus       498 -l~~~~~~~  505 (506)
T KOG2441|consen  498 -LSDLKKHK  505 (506)
T ss_pred             -hHhhhhcC
Confidence             99999874

>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []	Back alignment and domain information

>PTZ00266 NIMA-related protein kinase; Provisional	Back alignment and domain information

>PTZ00266 NIMA-related protein kinase; Provisional	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		765
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	6e-06
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	9e-05
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	4e-04
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	7e-04
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 61.0 bits (147), Expect = 1e-09
 Identities = 86/551 (15%), Positives = 170/551 (30%), Gaps = 157/551 (28%)

Query: 283 LQDVQINDNFAKLSEALYVAEQKAREAVAMRSKVQKEMLMKEKERKEQELR---ALAQKA 339
           L   +  D F    +   V +   +  +   SK + + ++  K+     LR    L  K 
Sbjct: 22  LSVFE--DAFVDNFDCKDV-QDMPKSIL---SKEEIDHIIMSKDAVSGTLRLFWTLLSK- 74

Query: 340 RSERTGAAPPASV----------PIPSEKSAMDTSDMREDYEHERER--RRERDMPKE-- 385
             E         V          PI +E      S M   Y  +R+R     +   K   
Sbjct: 75  -QEEMVQKFVEEVLRINYKFLMSPIKTE--QRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 386 TREEREERLQREKLRAERRRERERERRLEAKDAA------MG--KKSKITRD--RDRDIS 435
           +R +   +L R+ L             LE + A       +    K+ +  D      + 
Sbjct: 132 SRLQPYLKL-RQAL-------------LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 436 EKFALGM--ASTGAARGGEVMYD--QRLFNQEKGMDSGF-ATDDQYNVYDKGLFTAQPTL 490
            K    +   +       E + +  Q+L  Q   +D  + +  D  +     + + Q  L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 491 STLYRPKKDAD-----DDMYGGNADEQME---KIMKTDRFKPDKGFAGSSERSGPR--DR 540
             L + K   +      ++    A        KI+ T RFK    F  ++  +       
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 541 PVEF-EKEAEE-------ADPFGLDEFLTEVKKGGKKALDKVGTGGTMRASAGSSMRDDY 592
            +     E +          P  L     EV     + L          +    S+RD  
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTNPRRL----------SIIAESIRD-- 339

Query: 593 GGSGFEFIKAVLSFEAFS--LQASVDVFNSNDL-----------SGTHIRRPS------W 633
           G + ++  K V + +  +  +++S++V    +               HI  P+      W
Sbjct: 340 GLATWDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSLIW 396

Query: 634 FNAPTAPQPLIKRHVGGSETKKNCSRWACMLRGCASYSIIQFKSPTLSVSLPLRPSLSQP 693
           F+   +   ++                   +     YS+++ +    ++S+P      + 
Sbjct: 397 FDVIKSDVMVV-------------------VNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 694 RLDSVIFMNLKDIGASAVSCYSGNK-------------NHFFSWI---LFCLLP--KFLG 735
           +L+     N   +  S V  Y+  K              +F+S I   L  +    +   
Sbjct: 438 KLE-----NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 736 TPIAYVPF-FL 745
             + ++ F FL
Sbjct: 493 FRMVFLDFRFL 503

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		765
2k7n_A		203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	97.89

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}	Back alignment and structure

Probab=97.89  E-value=3.1e-06  Score=84.21  Aligned_cols=31  Identities=61%  Similarity=0.987  Sum_probs=26.5

Q ss_pred             CCccCCcccCCCCCCCCccccccCCCcCCCC
Q 045842           54 GFVPRKIEDFGDGGAFPEIHIGQYPLDMGRN   84 (765)
Q Consensus        54 gw~Pr~~eDFgDGGAFPEIhvAQYPL~MG~k   84 (765)
                      |--|.+-.-=||||||||+||+||||+||||
T Consensus       173 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (203)
T 2k7n_A          173 GSGGGSGGGSGDGGAFPEIHVAQYPLDMGRK  203 (203)
T ss_dssp             CTTCCSSCCCSCBCCCTTTTSCCCSSSTTTC
T ss_pred             CCCCCCCCCCccCccccceeecccccccCCC
Confidence            4456666677999999999999999999986

PyMOL of 2k7n

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		765
d2es4d1		280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	3e-04
d1f5na1		300	a.114.1.1 (A:284-583) Interferon-induced guanylate	0.002
d1f5na1		300	a.114.1.1 (A:284-583) Interferon-induced guanylate	0.003

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300	Back information, alignment and structure

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00