Citrus Sinensis ID: 045904

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
KGLLITWVQEDLRKREERAEVMDERRGRIINASSPYSDSEEESDSDESKIMAAKRYLNRDRNKPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEEcHHHHHHHHHHHHHHHHHHcccEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
KGLLITWVQEDLRKREERAEVMDERRgriinasspysdseeesdsdESKIMAAKRYLnrdrnkpaadeektaeggftkftGRQARLFELKLKFNEARKANQTAMdadirrkeapassrensrgvstQEWLEQRKRKIGKLLeangldtsrAYMLDTQEAAEAKYKKrakepapfgwevfnqRTLYGAYKRRAEKIEVDLEEYnrmkeadpefyrgasslqygtapkiseDKIERMVKELKDQEEKRKSFSrrrrfhdekdvdsinhrnehFNSKIERAYGKYTLDIKNnlergtal
Flexible Loop (DISEMBL)
kgllitwvqedlrkreeraevmderrgriinasspysdseeesdsdeSKIMAAKrylnrdrnkpaadeektaeggftkftgrQARLFELKLKFNEArkanqtamdadirrkeapassrensrgvstqewlEQRKRKIGklleangldtsraYMLDTQEAAEAKYKKRakepapfgwevfnqrtlygaYKRRAEKIEVDLEEYNRMkeadpefyrgasslqygtapkisedkIERMVKELkdqeekrksfsrrrrfhdekdvdsinhrnehfnskieraygkytldiknnlergtal
Low Complexity Region (SEG)
KGLLITWVQEDLRKREERAEVMDERRGRIINAsspysdseeesdsdesKIMAAKRYLNRDRNKPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKIGKLLEANGLDTSRAYMLDTQeaaeakykkrakePAPFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQeekrksfsrrrrfHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL
Disordered region (IsUnstruct)
***LITWV**********************************************************************FTGRQARLFELKLK*******************************************************************************APFGWEVFNQRTLYGAYKRRAEKIEVDLEE***************************************************************************RAYGKYTLDI**********
Disordered Region (DISOPRED)
*GLLITWVQ*********************************************************************************************************************************************AYMLDTQEAA*****************VFNQRTLYGAYKRRAEKI***********************LQY****KISEDKIERMVKE*********************DVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGT**
Disordered Region (DISEMBL)
KGLLITWVQEDLRKREERAEVMDERRGRIINAS***************KIMAAKRYLNR************AEGGFTKFTGRQARLFELKLKFNEARKANQTAMDAD*********************WLEQRKRKIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKE**************RRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL
Disordered Region (DISPRO)
*GLLITWVQEDLRKREERAEVMD********************************************************TGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGT**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KGLLITWVQEDLRKREERAEVMDERRGRIINASSPYSDSEEESDSDESKIMAAKRYLNRDRNKPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAPFGWEVFNQRTLxxxxxxxxxxxxxxxxxxxxxKEADPEFYRGASSLQYGTAPKISEDKxxxxxxxxxxxxxxxxxxxxxRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q6DGP2	238	Pre-mRNA-splicing factor	yes	no	0.760	0.945	0.358	1e-24
Q28G05	249	Pre-mRNA-splicing factor	yes	no	0.753	0.895	0.374	2e-24
Q8AVQ6	240	Pre-mRNA-splicing factor	N/A	no	0.702	0.866	0.402	1e-22
Q4QRB2	242	Pre-mRNA-splicing factor	yes	no	0.756	0.925	0.368	2e-22
Q9D198	242	Pre-mRNA-splicing factor	yes	no	0.756	0.925	0.368	2e-22
Q6DV01	249	Pre-mRNA-splicing factor	N/A	no	0.685	0.815	0.379	3e-22
O95926	243	Pre-mRNA-splicing factor	yes	no	0.685	0.835	0.364	4e-21
Q9V5Q4	226	Pre-mRNA-splicing factor	yes	no	0.692	0.907	0.337	2e-19
Q28XK6	226	Pre-mRNA-splicing factor	yes	no	0.716	0.938	0.339	1e-17
Q612R3	233	Pre-mRNA-splicing factor	N/A	no	0.648	0.824	0.341	3e-11

>sp|Q6DGP2|SYF2_DANRE Pre-mRNA-splicing factor syf2 OS=Danio rerio GN=syf2 PE=2 SV=1

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 133/237 (56%), Gaps = 12/237 (5%)

Query: 64  PAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRG 123
           P+ +EE T      K   R  +  EL  K NEARK N   +  + +R + P++       
Sbjct: 10  PSNEEEVTETPAAQKREERLRKFRELHFKRNEARKLNHQEVVEEDKRLKLPSNWEAKKAR 69

Query: 124 VSTQEWLEQRKRKIGKLLEANGLDTSRAYMLDT--QEAAEAKYKKRAKEPAPFGWEVFNQ 181
           +  +  ++Q+K++  +     G D  R  +L+   ++A   + KK+ + P P G+  + +
Sbjct: 70  LEYELLVDQKKKECAE----RGEDYDRVKLLEISAEDAERWERKKKKRNPDP-GFSGYAE 124

Query: 182 RTLYGAYKRRAEKIEVDLEEYNRMKE-ADPEFYRGASSLQYGT-APKISEDKIERMVKEL 239
             L   Y+R  ++I+ D+E Y + KE    +F+  ++SL YGT  P  S+D I RMV ++
Sbjct: 125 AQL-RQYQRLTKQIKPDMENYEKQKEECGEDFHPTSNSLIYGTHVP--SKDSINRMVDDV 181

Query: 240 KDQEEKRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
           + Q EKR  +SRRR ++D+ D+D IN RN  FN K ER YGKYT +IK NLERGTA+
Sbjct: 182 EKQIEKRAKYSRRRAYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 238

May be involved in pre-mRNA splicing.
Danio rerio (taxid: 7955)

>sp|Q28G05|SYF2_XENTR Pre-mRNA-splicing factor syf2 OS=Xenopus tropicalis GN=syf2 PE=2 SV=1

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/235 (37%), Positives = 133/235 (56%), Gaps = 12/235 (5%)

Query: 64  PAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRG 123
           PA+ E+  A+    K   R  +  EL LK NEARK N   +  + +R++ P+    N   
Sbjct: 25  PASTEDLAAQ----KREARLRKFRELHLKTNEARKLNHQEVVEEDKRQKLPS----NWEA 76

Query: 124 VSTQEWLEQRKRKIGKLLEANGLDTSRAYMLD-TQEAAEAKYKKRAKEPAPFGWEVFNQR 182
              +   E ++ +  +   ANG+D  RA +L+ + E AE   +K+ ++    G+  +   
Sbjct: 77  RKARLEWELKEEEKKRECAANGVDYERAKLLEISAEDAERWERKKKRKNPDLGFSDYAAA 136

Query: 183 TLYGAYKRRAEKIEVDLEEYNRMKEADPE-FYRGASSLQYGTAPKISEDKIERMVKELKD 241
            L   Y+R  ++I+ D+EEY   K+   E FY  + SL +GT    S+  I+RMV +L+ 
Sbjct: 137 QL-RQYQRLTKQIKPDMEEYEMEKQKQGEMFYPTSESLYHGTHIP-SQSGIDRMVTDLEK 194

Query: 242 QEEKRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
           Q EKR+ +SRRR ++D+ D+D IN RN  FN K ER YGKYT +IK NLERGTA+
Sbjct: 195 QIEKREKYSRRRAYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 249

May be involved in pre-mRNA splicing.

Xenopus tropicalis (taxid: 8364)

>sp|Q8AVQ6|SYF2_XENLA Pre-mRNA-splicing factor syf2 OS=Xenopus laevis GN=syf2 PE=2 SV=1

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/221 (40%), Positives = 131/221 (59%), Gaps = 13/221 (5%)

Query: 82  RQARLF---ELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKIG 138
           R+ARL    EL LK NEARK N   +  + +R++ P++       +  +   E++KR+  
Sbjct: 27  REARLRKFRELHLKTNEARKLNHQEVVEEDKRQKLPSNWEARKARLEWELKNEEKKRECA 86

Query: 139 KLLEANGLDTSRAYMLD-TQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEKIEV 197
               ANG+D  RA +L+ + E AE   +K+ ++    G+  +    L   Y+R  ++I+ 
Sbjct: 87  ----ANGVDFERAKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQL-RQYQRLTKQIKP 141

Query: 198 DLEEYNRMKEADPE-FYRGASSLQYGT-APKISEDKIERMVKELKDQEEKRKSFSRRRRF 255
           D+EEY   KE   E FY  + SL +GT  P  S+  I+RMV +L+ Q EKR+ +SRRR +
Sbjct: 142 DMEEYEMEKEKQGELFYPTSDSLYHGTHVP--SQSGIDRMVTDLEKQIEKREKYSRRRAY 199

Query: 256 HDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
           +D+ D+D IN RN  FN K ER YGKYT +IK NLERGTA+
Sbjct: 200 NDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 240

May be involved in pre-mRNA splicing.

Xenopus laevis (taxid: 8355)

>sp|Q4QRB2|SYF2_RAT Pre-mRNA-splicing factor SYF2 OS=Rattus norvegicus GN=Syf2 PE=2 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/236 (36%), Positives = 128/236 (54%), Gaps = 12/236 (5%)

Query: 63  KPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSR 122
           +P A EE  A+    K   R  +  EL LK NEARK N   +  + +R + PA    N  
Sbjct: 17  RPLAAEELAAQ----KREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPA----NWE 68

Query: 123 GVSTQEWLEQRKRKIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAP-FGWEVFNQ 181
               +   E ++ +  K   A G D  +  +L+       ++++R K+  P  G+  +  
Sbjct: 69  AKKARLEWELQEEEKKKECAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYAA 128

Query: 182 RTLYGAYKRRAEKIEVDLEEYNRMKEADPE-FYRGASSLQYGTAPKISEDKIERMVKELK 240
             L   Y R  ++I+ D+E Y R +E   E F+  ++SL +GT    SE+ I+RMV +L+
Sbjct: 129 AQL-RQYHRLTKQIKPDMESYERQREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVLDLE 186

Query: 241 DQEEKRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
            Q EKR  +SRRR ++D+ D+D IN RN  FN K ER YGKYT +IK NLERGTA+
Sbjct: 187 KQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242

May be involved in pre-mRNA splicing.

Rattus norvegicus (taxid: 10116)

>sp|Q9D198|SYF2_MOUSE Pre-mRNA-splicing factor SYF2 OS=Mus musculus GN=Syf2 PE=2 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/236 (36%), Positives = 128/236 (54%), Gaps = 12/236 (5%)

Query: 63  KPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSR 122
           +P A EE  A+    K   R  +  EL LK NEARK N   +  + +R + PA    N  
Sbjct: 17  RPLAAEELAAQ----KREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPA----NWE 68

Query: 123 GVSTQEWLEQRKRKIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAP-FGWEVFNQ 181
               +   E ++ +  K   A G D  +  +L+       ++++R K+  P  G+  +  
Sbjct: 69  AKKARLEWELQEEEKKKECAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYAA 128

Query: 182 RTLYGAYKRRAEKIEVDLEEYNRMKEADPE-FYRGASSLQYGTAPKISEDKIERMVKELK 240
             L   Y R  ++I+ D+E Y R +E   E F+  ++SL +GT    SE+ I+RMV +L+
Sbjct: 129 AQL-RQYHRLTKQIKPDMESYERQREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVLDLE 186

Query: 241 DQEEKRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
            Q EKR  +SRRR ++D+ D+D IN RN  FN K ER YGKYT +IK NLERGTA+
Sbjct: 187 KQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242

May be involved in pre-mRNA splicing.

Mus musculus (taxid: 10090)

>sp|Q6DV01|SYF2_GECJA Pre-mRNA-splicing factor syf2 OS=Gecko japonicus GN=syf2 PE=2 SV=1

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/211 (37%), Positives = 121/211 (57%), Gaps = 8/211 (3%)

Query: 88  ELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKIGKLLEANGLD 147
           EL LK NEARK N   +  + +R + PA    N     ++   E +  +  K   A G D
Sbjct: 45  ELHLKRNEARKLNHQEVVEEDKRLKLPA----NWEAKKSRLEWELKVEEKKKECVAKGED 100

Query: 148 TSRAYMLD-TQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMK 206
             R  +L+ + E AE   +KR K     G+  +    +   Y+R   +I+ DLE+Y +++
Sbjct: 101 YERVKLLEISAEDAERFERKRKKRNPDLGFSDYAAAQM-RQYQRLTRQIKPDLEKYAKLR 159

Query: 207 E-ADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRRRRFHDEKDVDSIN 265
           E +  EFY  ++SL +GT     E  +++MV++L+ Q +KR+ +SRRR ++D+ D+D IN
Sbjct: 160 EESGEEFYPTSNSLLHGTHVPCKEG-VDKMVEDLEKQIQKREKYSRRRPYNDDADIDYIN 218

Query: 266 HRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
            RN  FN K ER YGKYT +IK NLERGTA+
Sbjct: 219 ERNAKFNKKAERFYGKYTAEIKQNLERGTAV 249

May be involved in pre-mRNA splicing.

Gecko japonicus (taxid: 146911)

>sp|O95926|SYF2_HUMAN Pre-mRNA-splicing factor SYF2 OS=Homo sapiens GN=SYF2 PE=1 SV=1

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 8/211 (3%)

Query: 88  ELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKIGKLLEANGLD 147
           EL L  NEARK N   +  + +R + PA    N      +   E ++ +  K   A G D
Sbjct: 39  ELHLMRNEARKLNHQEVVEEDKRLKLPA----NWEAKKARLEWELKEEEKKKECAARGED 94

Query: 148 TSRAYMLDTQEAAEAKYKKRAKEPAP-FGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMK 206
             +  +L+       +++++ K   P  G+  +    L   Y R  ++I+ D+E Y R++
Sbjct: 95  YEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQL-RQYHRLTKQIKPDMETYERLR 153

Query: 207 EAD-PEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRRRRFHDEKDVDSIN 265
           E    EF+  ++SL +GT    +E+ I+RMV +L+ Q EKR  +SRRR ++D+ D+D IN
Sbjct: 154 EKHGEEFFPTSNSLLHGTHVPSTEE-IDRMVIDLEKQIEKRDKYSRRRPYNDDADIDYIN 212

Query: 266 HRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
            RN  FN K ER YGKYT +IK NLERGTA+
Sbjct: 213 ERNAKFNKKAERFYGKYTAEIKQNLERGTAV 243

May be involved in pre-mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q9V5Q4|SYF2_DROME Pre-mRNA-splicing factor Syf2 OS=Drosophila melanogaster GN=Syf2 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 118/231 (51%), Gaps = 26/231 (11%)

Query: 78  KFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKI 137
           K   R+ARL +L  K  EAR  N   + A+  RK+ P            + W E RKR+ 
Sbjct: 10  KLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLP------------KNW-EARKRQA 56

Query: 138 GKLL---------EANGLDTSRAYMLDTQ--EAAEAKYKKRAKEPAPFGWEVFNQRTLYG 186
             +L         +A G D  R  +L+    +A   + KK+ K+    G+  +  +T   
Sbjct: 57  EWILADDKARAEAQAAGKDYERLKLLEVSAVDADRIEKKKKRKDNPDLGFSTYEAQTAR- 115

Query: 187 AYKRRAEKIEV-DLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEK 245
            Y R  + +   DLE+Y R KE   + + G +     +  K +   I +MV +L+ Q E+
Sbjct: 116 QYNRLVKSMPARDLEKYERQKEELGDAFYGGAHTTLHSRTKDTPGAINKMVTDLEQQIER 175

Query: 246 RKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
           RK +SRRR ++D+ DVD IN RN  FN K++R Y ++T +IK NLERGTA+
Sbjct: 176 RKKYSRRRIYNDDADVDFINERNSKFNKKLDRFYSEHTAEIKQNLERGTAI 226

May be involved in pre-mRNA splicing.

Drosophila melanogaster (taxid: 7227)

>sp|Q28XK6|SYF2_DROPS Pre-mRNA-splicing factor Syf2 OS=Drosophila pseudoobscura pseudoobscura GN=Syf2 PE=3 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 115/224 (51%), Gaps = 12/224 (5%)

Query: 78  KFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWL--EQRKR 135
           K   R+ARL +L  K  EAR  N   + A+  RK+ P +     R     EWL  + + R
Sbjct: 10  KLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKNWEARKRQA---EWLLADDKAR 66

Query: 136 KIGKLLEANGLDTSRAYMLDTQ--EAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAE 193
           +     +A G D  R  +L+    +A   + KK+ K+    G+  +  +T    Y R  +
Sbjct: 67  EDA---QAAGKDYERLKLLEVSAIDAERIEKKKKRKDNPDLGFSTYEAQTAR-QYSRLVK 122

Query: 194 KIEV-DLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRR 252
            +   D+E+Y + K    E + G          K +   I +MV +L  Q E+RK +SRR
Sbjct: 123 GMPARDMEKYEKQKAELGEAFYGGPHTTLHALTKDTPAAINKMVNDLDQQIERRKKYSRR 182

Query: 253 RRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
           R ++D+ DVD IN RN  FN K++R YG++T +IK NLERGTA+
Sbjct: 183 RIYNDDADVDFINERNSKFNKKLDRFYGEHTAEIKQNLERGTAI 226

May be involved in pre-mRNA splicing.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q612R3|SYF2_CAEBR Pre-mRNA-splicing factor syf-2 OS=Caenorhabditis briggsae GN=syf-2 PE=3 SV=2

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 16/208 (7%)

Query: 96  ARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKIGKLLEANGLDTSRAYML- 154
           ARK N   +  + RRK+ P    +N      ++  + ++ +  K  E  GLD  R   L 
Sbjct: 35  ARKENHAQVVEEDRRKKLP----KNFEAKKERDQWQVKELQDRKEAEDKGLDYERVRSLE 90

Query: 155 ---DTQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKEA--D 209
              D  E  E K +KR K P   G+  +   TL   + R    ++ DLE Y +MKE    
Sbjct: 91  MSADVTEKLEQK-RKRKKNPDQ-GFASYEDMTL-RQHTRLTAALDPDLESYKKMKECVGG 147

Query: 210 PEFYRGASSLQYGTA-PKISEDKIERMVKELKDQEEKRKSFSRRRRFHDEKDVDSINHRN 268
            +FY  A +L +G   P  S   ++R+VK++  Q ++R+ + RRR +  +  +D IN +N
Sbjct: 148 DQFYPTADTLIHGNHYPTTS--AMDRLVKDVHGQVKRREQYHRRRLYDPDAPIDYINEKN 205

Query: 269 EHFNSKIERAYGKYTLDIKNNLERGTAL 296
           + FN K+++ YGKYT DIK++LERGTA+
Sbjct: 206 KKFNKKLDKYYGKYTEDIKDDLERGTAI 233

May be involved in pre-mRNA splicing.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
225428053	295	PREDICTED: pre-mRNA-splicing factor syf2	0.881	0.884	0.617	4e-93
147816495	295	hypothetical protein VITISV_007542 [Viti	0.881	0.884	0.617	5e-93
225428055	313	PREDICTED: pre-mRNA-splicing factor syf2	0.891	0.843	0.593	8e-93
255560553	308	Pre-mRNA-splicing factor syf2, putative	0.733	0.704	0.751	6e-92
449458624	310	PREDICTED: pre-mRNA-splicing factor syf2	0.756	0.722	0.710	6e-92
395146472	1429	putative ATP-binding protein [Linum usit	0.729	0.151	0.709	3e-86
413943161	353	hypothetical protein ZEAMMB73_451130 [Ze	0.881	0.739	0.585	6e-86
224078363	308	predicted protein [Populus trichocarpa]	0.746	0.717	0.737	1e-85
242094176	353	hypothetical protein SORBIDRAFT_10g02969	0.881	0.739	0.585	2e-85
115469904	340	Os06g0711600 [Oryza sativa Japonica Grou	0.881	0.767	0.588	2e-85

>gi|225428053|ref|XP_002279513.1| PREDICTED: pre-mRNA-splicing factor syf2 isoform 2 [Vitis vinifera]

 Score =  347 bits (889), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 179/290 (61%), Positives = 218/290 (75%), Gaps = 29/290 (10%)

Query: 29  IINASSPYSDSEEESDSDESKIMAAKRYLNR------DRNKPAADE-------------- 68
            INAS+PY +  E       KI  AK  +++      D++K   DE              
Sbjct: 11  CINASNPYHECVEYC---FRKIAEAKAQMDKKESGVPDQDKNTHDEGTDPEERSDDDNDQ 67

Query: 69  --EKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVST 126
             E+  E  FT+ TGRQ +LFEL+LK NEARKANQTAM A+ ++ EAP  SR    G+S 
Sbjct: 68  PVEEIEEVDFTQLTGRQKKLFELRLKMNEARKANQTAMVAEKKKMEAPPESR----GISK 123

Query: 127 QEWLEQRKRKIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAPFGWEVFNQRTLYG 186
           Q+W+E+RK+KIGKLL+ NGLD  +AYMLDTQE AE KYKK  K+PAPFGW+VFNQ+TLY 
Sbjct: 124 QKWIEERKKKIGKLLDVNGLDMKKAYMLDTQEMAETKYKKWEKDPAPFGWDVFNQKTLYN 183

Query: 187 AYKRRAEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKR 246
           AYK+R + IEVD++EYN+MKEADPEFYR ASSLQYG APK SEDKI++MVKELKD++EKR
Sbjct: 184 AYKKRTKNIEVDIDEYNKMKEADPEFYREASSLQYGKAPKCSEDKIDKMVKELKDRDEKR 243

Query: 247 KSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
           +SFSRRR+FH+EKD+DSIN RNEHFN KIERA+GKYTL+IKNNLERGTAL
Sbjct: 244 QSFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816495|emb|CAN77350.1| hypothetical protein VITISV_007542 [Vitis vinifera]

 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 179/290 (61%), Positives = 218/290 (75%), Gaps = 29/290 (10%)

Query: 29  IINASSPYSDSEEESDSDESKIMAAKRYLNR------DRNKPAADE-------------- 68
            INAS+PY +  E       KI  AK  +++      D++K   DE              
Sbjct: 11  CINASNPYHECVEYC---FRKIAEAKAQMDKKESGVPDQDKNPHDEGTDPEEQSDDDNDQ 67

Query: 69  --EKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVST 126
             E+  E  FT+ TGRQ +LFEL+LK NEARKANQTAM A+ ++ EAP  SR    G+S 
Sbjct: 68  PVEEIEEVDFTQLTGRQKKLFELRLKMNEARKANQTAMVAEKKKMEAPPESR----GISK 123

Query: 127 QEWLEQRKRKIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAPFGWEVFNQRTLYG 186
           Q+W+E+RK+KIGKLL+ NGLD  +AYMLDTQE AE KYKK  K+PAPFGW+VFNQ+TLY 
Sbjct: 124 QKWIEERKKKIGKLLDVNGLDMKKAYMLDTQEMAETKYKKWEKDPAPFGWDVFNQKTLYN 183

Query: 187 AYKRRAEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKR 246
           AYK+R + IEVD++EYN+MKEADPEFYR ASSLQYG APK SEDKI++MVKELKD++EKR
Sbjct: 184 AYKKRTKNIEVDIDEYNKMKEADPEFYREASSLQYGKAPKCSEDKIDKMVKELKDRDEKR 243

Query: 247 KSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
           +SFSRRR+FH+EKD+DSIN RNEHFN KIERA+GKYTL+IKNNLERGTAL
Sbjct: 244 QSFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428055|ref|XP_002279493.1| PREDICTED: pre-mRNA-splicing factor syf2 isoform 1 [Vitis vinifera] gi|297744598|emb|CBI37860.3| unnamed protein product [Vitis vinifera]

 Score =  346 bits (887), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 181/305 (59%), Positives = 223/305 (73%), Gaps = 41/305 (13%)

Query: 29  IINASSPYSDSEE-----------ESDSDESKIMAA--------KRYLN--RDRNKPAAD 67
            INAS+PY +  E           + D  ES++M A         +Y++   D++K   D
Sbjct: 11  CINASNPYHECVEYCFRKIAEAKAQMDKKESEVMEAGSGSGGGNDQYISGVPDQDKNTHD 70

Query: 68  E----------------EKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRK 111
           E                E+  E  FT+ TGRQ +LFEL+LK NEARKANQTAM A+ ++ 
Sbjct: 71  EGTDPEERSDDDNDQPVEEIEEVDFTQLTGRQKKLFELRLKMNEARKANQTAMVAEKKKM 130

Query: 112 EAPASSRENSRGVSTQEWLEQRKRKIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEP 171
           EAP  SR    G+S Q+W+E+RK+KIGKLL+ NGLD  +AYMLDTQE AE KYKK  K+P
Sbjct: 131 EAPPESR----GISKQKWIEERKKKIGKLLDVNGLDMKKAYMLDTQEMAETKYKKWEKDP 186

Query: 172 APFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDK 231
           APFGW+VFNQ+TLY AYK+R + IEVD++EYN+MKEADPEFYR ASSLQYG APK SEDK
Sbjct: 187 APFGWDVFNQKTLYNAYKKRTKNIEVDIDEYNKMKEADPEFYREASSLQYGKAPKCSEDK 246

Query: 232 IERMVKELKDQEEKRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLE 291
           I++MVKELKD++EKR+SFSRRR+FH+EKD+DSIN RNEHFN KIERA+GKYTL+IKNNLE
Sbjct: 247 IDKMVKELKDRDEKRQSFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLE 306

Query: 292 RGTAL 296
           RGTAL
Sbjct: 307 RGTAL 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560553|ref|XP_002521291.1| Pre-mRNA-splicing factor syf2, putative [Ricinus communis] gi|223539559|gb|EEF41147.1| Pre-mRNA-splicing factor syf2, putative [Ricinus communis]

 Score =  343 bits (879), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 166/221 (75%), Positives = 193/221 (87%), Gaps = 4/221 (1%)

Query: 76  FTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKR 135
            TK TGRQ +LFEL+LK NEARKANQTAM A+ ++ EAP    + SRG+S Q+WLE+RK+
Sbjct: 90  VTKLTGRQKKLFELRLKMNEARKANQTAMVAEKKKMEAP----QESRGISKQKWLEERKK 145

Query: 136 KIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEKI 195
           KIGKLL+ANGLD ++AYMLDTQEAAE KYKK  K PAPFGW+VFNQ+TLY AYK+R   I
Sbjct: 146 KIGKLLDANGLDMTKAYMLDTQEAAEVKYKKWEKGPAPFGWDVFNQKTLYNAYKKRTMNI 205

Query: 196 EVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRRRRF 255
           EVDLEEYN+MKE+DPEFYR ASSLQYG APKISE+K++RMVKELKD+EEKR SFSRRR+F
Sbjct: 206 EVDLEEYNKMKESDPEFYREASSLQYGKAPKISEEKVDRMVKELKDREEKRNSFSRRRKF 265

Query: 256 HDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
            +EKD+DSIN RNEHFN KIERA+GKYTL+IKNNLERGTAL
Sbjct: 266 REEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458624|ref|XP_004147047.1| PREDICTED: pre-mRNA-splicing factor syf2-like [Cucumis sativus] gi|449489629|ref|XP_004158369.1| PREDICTED: pre-mRNA-splicing factor syf2-like [Cucumis sativus]

 Score =  343 bits (879), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 162/228 (71%), Positives = 198/228 (86%), Gaps = 4/228 (1%)

Query: 69  EKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQE 128
           E+  EG FTK TGR+ +LFE++LK NEARKANQTA+ A+ ++ E P+ SR    G+S Q+
Sbjct: 85  EENVEGDFTKLTGRKKKLFEIRLKMNEARKANQTAIAAEKKKMEPPSESR----GISKQK 140

Query: 129 WLEQRKRKIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAY 188
           WLE RK+KIGKLL+ANGLD ++AYMLDTQEAAE KYKK  K+PAP+GW+VFNQ+TLY AY
Sbjct: 141 WLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAENKYKKWEKDPAPYGWDVFNQKTLYNAY 200

Query: 189 KRRAEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRKS 248
           K+R + + +DLEEYN+MKE+DPEFYR ASSLQYG APKISEDKI+ MVKELKD++EKRKS
Sbjct: 201 KKRTKNVNIDLEEYNKMKESDPEFYREASSLQYGKAPKISEDKIDNMVKELKDRDEKRKS 260

Query: 249 FSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
           FSRRR+FH++KD+DSIN RNEHFN KIERA+G+YTL+IKNNLERGTAL
Sbjct: 261 FSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYTLEIKNNLERGTAL 308

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395146472|gb|AFN53629.1| putative ATP-binding protein [Linum usitatissimum]

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 156/220 (70%), Positives = 186/220 (84%), Gaps = 4/220 (1%)

Query: 77   TKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRK 136
            TK +GRQ +L ELK K + A+KANQ  + A+++R E P    + SRG+S Q+WLE+RK+K
Sbjct: 1212 TKLSGRQKKLLELKRKMDAAKKANQMEIKAEMKRLEPP----QESRGISKQKWLEERKKK 1267

Query: 137  IGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEKIE 196
            IGKLL+AN LD  RAYMLDTQEAAE KYKK  KEPAP GW+VFNQ++LY AYK+R + + 
Sbjct: 1268 IGKLLDANDLDMKRAYMLDTQEAAEVKYKKWEKEPAPAGWDVFNQKSLYNAYKKRTKNVN 1327

Query: 197  VDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRRRRFH 256
            VD EEYN+MKEADPEFYR ASSLQYG APK+SEDKI RMVKELKD++EKRKSFSRRR+F+
Sbjct: 1328 VDQEEYNKMKEADPEFYRDASSLQYGKAPKMSEDKINRMVKELKDRDEKRKSFSRRRKFN 1387

Query: 257  DEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
            +EKD+DSIN RNEHFN KIERA+GKYTL+IKNNLERGTAL
Sbjct: 1388 EEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 1427

Source: Linum usitatissimum

Species: Linum usitatissimum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413943161|gb|AFW75810.1| hypothetical protein ZEAMMB73_451130 [Zea mays]

 Score =  323 bits (828), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 171/292 (58%), Positives = 210/292 (71%), Gaps = 31/292 (10%)

Query: 29  IINASSPYSDSEEESDSDESKIMAAKRYLNRDRNKPAAD----------------EEKTA 72
            INA +PY    E SD    +I  AK  L R   +P AD                E+  A
Sbjct: 67  CINACNPY---HECSDYCFKRIADAKSGLERGEQQPPADVATAAGTSDAVEQQQLEDNDA 123

Query: 73  EG--------GFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGV 124
           +G        G+ + T +Q +LFEL+LK NEARKANQ AM A+ +R E     R  SRGV
Sbjct: 124 DGQEGAAADDGYPQMTEKQKKLFELRLKMNEARKANQQAMVAEKKRME----PRGESRGV 179

Query: 125 STQEWLEQRKRKIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAPFGWEVFNQRTL 184
           S Q+WL+ RK+KIGKLL++NGLD S+AYMLDTQE AEAKYKK  KEPAP+GW+VFNQ+TL
Sbjct: 180 SKQKWLDDRKKKIGKLLDSNGLDMSKAYMLDTQETAEAKYKKWEKEPAPYGWDVFNQKTL 239

Query: 185 YGAYKRRAEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEE 244
           Y AYK+R + IEVD+E YN+ KEADPEFYR ASSLQYG    + E+ I++MVKELK++EE
Sbjct: 240 YDAYKKRTKDIEVDMEAYNKAKEADPEFYRDASSLQYGKVSNVPEENIDKMVKELKEREE 299

Query: 245 KRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
           KRKSFSRRR+F+++KD+DSIN RNEHFN K+ERA+GKYTL+IKNNLERGTAL
Sbjct: 300 KRKSFSRRRKFNEDKDIDSINDRNEHFNKKVERAFGKYTLEIKNNLERGTAL 351

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078363|ref|XP_002305528.1| predicted protein [Populus trichocarpa] gi|222848492|gb|EEE86039.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 166/225 (73%), Positives = 195/225 (86%), Gaps = 4/225 (1%)

Query: 72  AEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLE 131
            EG  T+ TGR+ +LFEL+LK NEARKANQTAM ++ ++ EAP+ SR    G+S Q+WLE
Sbjct: 86  VEGDVTQLTGRKKKLFELRLKMNEARKANQTAMVSEKKKMEAPSESR----GISKQKWLE 141

Query: 132 QRKRKIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRR 191
            RK+KIGKLL+ANGLD ++AYMLDTQEAAE KYKK  K+PAPFGW+VFNQ+TLY AYK+R
Sbjct: 142 DRKKKIGKLLDANGLDMTKAYMLDTQEAAEVKYKKWEKDPAPFGWDVFNQKTLYNAYKKR 201

Query: 192 AEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRKSFSR 251
            + ++VDLEEYN+MKEADPEFYR ASSLQYG APK SE+KIERMVKELKD++E RKSFSR
Sbjct: 202 TKNVDVDLEEYNKMKEADPEFYREASSLQYGKAPKTSEEKIERMVKELKDRDENRKSFSR 261

Query: 252 RRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
           RRRF DEKD+DSIN RNEHFN KIERA+GKYTL+IKNNLERGTAL
Sbjct: 262 RRRFRDEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242094176|ref|XP_002437578.1| hypothetical protein SORBIDRAFT_10g029690 [Sorghum bicolor] gi|241915801|gb|EER88945.1| hypothetical protein SORBIDRAFT_10g029690 [Sorghum bicolor]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 171/292 (58%), Positives = 208/292 (71%), Gaps = 31/292 (10%)

Query: 29  IINASSPYSDSEEESDSDESKIMAAKRYLNRDRNKPAAD--------------------- 67
            INAS+PY    E SD    +I  AK  L R   +P AD                     
Sbjct: 67  CINASNPY---HECSDYCFRRIADAKSGLERGEGQPPADVATAAGTSDAAEQQRPEDNDA 123

Query: 68  ---EEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGV 124
              E   A+ G+ + T +Q +LFEL+LK NEARKANQ AM A+ +R E     R  SRGV
Sbjct: 124 DKQEGAGADDGYLQMTEKQKKLFELRLKMNEARKANQQAMVAEKKRMEP----RGESRGV 179

Query: 125 STQEWLEQRKRKIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAPFGWEVFNQRTL 184
           S Q+WL+ RK+KIGKLL++NGLD S+AYMLDTQE AE KYKK  KEPAP+GW+VFNQ+TL
Sbjct: 180 SKQKWLDDRKKKIGKLLDSNGLDMSKAYMLDTQETAETKYKKWEKEPAPYGWDVFNQKTL 239

Query: 185 YGAYKRRAEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEE 244
           Y AYK+R + IEVD+E YN+ KEADPEFYR ASSLQYG    + E+ I++MVKELK++EE
Sbjct: 240 YDAYKKRTKNIEVDMEAYNKAKEADPEFYRDASSLQYGKVSNVPEENIDKMVKELKEREE 299

Query: 245 KRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
           KRKSFSRRR+F+++KD+DSIN RNEHFN KIERA+GKYTL+IKNNLERGTAL
Sbjct: 300 KRKSFSRRRKFNEDKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTAL 351

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115469904|ref|NP_001058551.1| Os06g0711600 [Oryza sativa Japonica Group] gi|53792638|dbj|BAD53652.1| GCIP-interacting family protein-like [Oryza sativa Japonica Group] gi|53792876|dbj|BAD54053.1| GCIP-interacting family protein-like [Oryza sativa Japonica Group] gi|113596591|dbj|BAF20465.1| Os06g0711600 [Oryza sativa Japonica Group] gi|215693889|dbj|BAG89088.1| unnamed protein product [Oryza sativa Japonica Group] gi|215736809|dbj|BAG95738.1| unnamed protein product [Oryza sativa Japonica Group] gi|222636208|gb|EEE66340.1| hypothetical protein OsJ_22627 [Oryza sativa Japonica Group]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 170/289 (58%), Positives = 212/289 (73%), Gaps = 28/289 (9%)

Query: 29  IINASSPYSDSEEESDSDESKIMAAKRYLNR-DRNKPAADEEKT----AEGG-------- 75
            INAS+PY    E       +I  AK  L R ++  P+AD  K+    AEGG        
Sbjct: 57  CINASNPYHVCSEYC---FKRIADAKSGLERAEQEPPSADAGKSDAAQAEGGGGDDDAEQ 113

Query: 76  --------FTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQ 127
                   + + T +Q +LFEL+LK NEARKANQ AM A+ +R E     R  SRGVS Q
Sbjct: 114 EDAGSDDGYPQMTEKQKKLFELRLKMNEARKANQQAMVAEKKRMEP----RAESRGVSKQ 169

Query: 128 EWLEQRKRKIGKLLEANGLDTSRAYMLDTQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGA 187
           +WLE RK+KIGKLL++NGLD +++YMLDTQE+AEAKYKK  KEPAP+GW+VFNQ+TLY A
Sbjct: 170 KWLEDRKKKIGKLLDSNGLDMTKSYMLDTQESAEAKYKKWEKEPAPYGWDVFNQKTLYDA 229

Query: 188 YKRRAEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQEEKRK 247
           YK+R + IEVD+E YN+ KEADPEFYR ASSLQYG   K+ E+ I+RMV ELK+++EKRK
Sbjct: 230 YKKRTKNIEVDMEAYNKAKEADPEFYRDASSLQYGKVSKVPEENIDRMVNELKERDEKRK 289

Query: 248 SFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
           +FSRRR+FH++KD+DSIN RNEHFN K+ERA+GKYTL+IKNNLERGTAL
Sbjct: 290 AFSRRRKFHEDKDIDSINDRNEHFNKKVERAFGKYTLEIKNNLERGTAL 338

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:2039395	298	AT2G16860 "AT2G16860" [Arabido	0.804	0.798	0.567	8e-69
ZFIN|ZDB-GENE-040801-170	238	syf2 "SYF2 homolog, RNA splici	0.760	0.945	0.316	1.4e-23
MGI|MGI:1915842	242	Syf2 "SYF2 homolog, RNA splici	0.753	0.921	0.337	3.8e-23
RGD|621592	242	Syf2 "SYF2 homolog, RNA splici	0.753	0.921	0.337	3.8e-23
UNIPROTKB|F1N607	235	SYF2 "Uncharacterized protein"	0.760	0.957	0.327	6.1e-23
UNIPROTKB|F1P0B5	235	SYF2 "Uncharacterized protein"	0.763	0.961	0.344	7.8e-23
UNIPROTKB|I3LK70	249	SYF2 "Uncharacterized protein"	0.760	0.903	0.327	7.8e-23
UNIPROTKB|O95926	243	SYF2 "Pre-mRNA-splicing factor	0.756	0.921	0.330	1.1e-21
FB|FBgn0033556	226	CG12343 [Drosophila melanogast	0.746	0.977	0.306	8.3e-19
UNIPROTKB|Q28XK6	226	Syf2 "Pre-mRNA-splicing factor	0.719	0.942	0.304	5.8e-18

TAIR|locus:2039395 AT2G16860 "AT2G16860" [Arabidopsis thaliana (taxid:3702)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 139/245 (56%), Positives = 174/245 (71%)

Query:    54 KRYLNRDRNKPAADEEKTAEG--GFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRK 111
             KR +  D ++   +EE   E     T+ TGRQ +LFEL+LK NEARK+NQT + ++ ++ 
Sbjct:    57 KR-IEEDSSEEEEEEEDNQEPQVDVTQLTGRQKKLFELRLKMNEARKSNQTDVGSEKKKM 115

Query:   112 EAPASSRENSRGVSTQEWLEQRKRKIGKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXP 171
             EAP  ++    G+S Q+WLE RK+KIGKLL+ANGLD ++AYMLDTQ             P
Sbjct:   116 EAPTETK----GISKQKWLEGRKKKIGKLLDANGLDMTQAYMLDTQEAAESKYKKWEKEP 171

Query:   172 APFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKEADPEFYRGASSLQYGTAPKISEDK 231
              P GW+VFNQ+TLY AYK+R + I+VDLEEYNRM+ ADPEFYR ASSLQYG APK S+DK
Sbjct:   172 TPAGWDVFNQKTLYNAYKKRTKNIQVDLEEYNRMRAADPEFYREASSLQYGKAPKTSQDK 231

Query:   232 IERMVKELKDQXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLE 291
             I++M KEL D+              +EKD+DSIN RNEHFN KIERA+GKYTL+IKNNLE
Sbjct:   232 IDKMAKELLDREQKRQEFSRRRKFREEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLE 291

Query:   292 RGTAL 296
             RGTAL
Sbjct:   292 RGTAL 296

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040801-170 syf2 "SYF2 homolog, RNA splicing factor (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 75/237 (31%), Positives = 117/237 (49%)

Query:    64 PAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRG 123
             P+ +EE T      K   R  +  EL  K NEARK N   +  + +R + P++       
Sbjct:    10 PSNEEEVTETPAAQKREERLRKFRELHFKRNEARKLNHQEVVEEDKRLKLPSNWEAKKAR 69

Query:   124 VSTQEWLEQRKRKIGKLLEANGLDTSRAYMLD--TQXXXXXXXXXXXXXPAPFGWEVFNQ 181
             +  +  ++Q+K++  +     G D  R  +L+   +             P P G+  + +
Sbjct:    70 LEYELLVDQKKKECAE----RGEDYDRVKLLEISAEDAERWERKKKKRNPDP-GFSGYAE 124

Query:   182 RTLYGAYKRRAEKIEVDLEEYNRMKE-ADPEFYRGASSLQYGT-APKISEDKIERMVKEL 239
               L   Y+R  ++I+ D+E Y + KE    +F+  ++SL YGT  P  S+D I RMV ++
Sbjct:   125 AQLR-QYQRLTKQIKPDMENYEKQKEECGEDFHPTSNSLIYGTHVP--SKDSINRMVDDV 181

Query:   240 KDQXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
             + Q             +D+ D+D IN RN  FN K ER YGKYT +IK NLERGTA+
Sbjct:   182 EKQIEKRAKYSRRRAYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 238

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

MGI|MGI:1915842 Syf2 "SYF2 homolog, RNA splicing factor (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 80/237 (33%), Positives = 116/237 (48%)

Query:    63 KPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSR 122
             +P A EE  A+    K   R  +  EL LK NEARK N   +  + +R + PA+      
Sbjct:    17 RPLAAEELAAQ----KREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKA 72

Query:   123 GVSTQEW-LEQRKRKIGKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXPAP-FGWEVFN 180
              +   EW L++ ++K  K   A G D  +  +L+                 P  G+  + 
Sbjct:    73 RL---EWELQEEEKK--KECAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYA 127

Query:   181 QRTLYGAYKRRAEKIEVDLEEYNRMKEADPE-FYRGASSLQYGTAPKISEDKIERMVKEL 239
                L   Y R  ++I+ D+E Y R +E   E F+  ++SL +GT    SE+ I+RMV +L
Sbjct:   128 AAQLR-QYHRLTKQIKPDMESYERQREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVLDL 185

Query:   240 KDQXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
             + Q             +D+ D+D IN RN  FN K ER YGKYT +IK NLERGTA+
Sbjct:   186 EKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242

GO:0000075 "cell cycle checkpoint" evidence=IMP

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0007369 "gastrulation" evidence=IMP

GO:0008380 "RNA splicing" evidence=IEA

GO:0048568 "embryonic organ development" evidence=IMP

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

RGD|621592 Syf2 "SYF2 homolog, RNA splicing factor (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 80/237 (33%), Positives = 116/237 (48%)

Query:    63 KPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSR 122
             +P A EE  A+    K   R  +  EL LK NEARK N   +  + +R + PA+      
Sbjct:    17 RPLAAEELAAQ----KREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKA 72

Query:   123 GVSTQEW-LEQRKRKIGKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXPAP-FGWEVFN 180
              +   EW L++ ++K  K   A G D  +  +L+                 P  G+  + 
Sbjct:    73 RL---EWELQEEEKK--KECAARGEDYEKVKLLEISAEDAERWERRKKKKNPDLGFSDYA 127

Query:   181 QRTLYGAYKRRAEKIEVDLEEYNRMKEADPE-FYRGASSLQYGTAPKISEDKIERMVKEL 239
                L   Y R  ++I+ D+E Y R +E   E F+  ++SL +GT    SE+ I+RMV +L
Sbjct:   128 AAQLR-QYHRLTKQIKPDMESYERQREKHGEDFFPTSNSLLHGTHVPSSEE-IDRMVLDL 185

Query:   240 KDQXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
             + Q             +D+ D+D IN RN  FN K ER YGKYT +IK NLERGTA+
Sbjct:   186 EKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 242

GO:0000075 "cell cycle checkpoint" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0007369 "gastrulation" evidence=ISO

GO:0008380 "RNA splicing" evidence=IEA

GO:0048568 "embryonic organ development" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

UNIPROTKB|F1N607 SYF2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 79/241 (32%), Positives = 119/241 (49%)

Query:    60 DRNKPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRE 119
             ++  PA  EE  ++    K   R  +  EL LK NEARK N   +  + +R + PA+   
Sbjct:     7 EQQPPAGAEELASQ----KREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEA 62

Query:   120 NSRGVSTQEW-LEQRKRKIGKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXPAP-FGWE 177
                 +   EW L++ ++K  K   A G D  +  +L+                 P  G+ 
Sbjct:    63 KKARL---EWELQEEEKK--KECAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFS 117

Query:   178 VFNQRTLYGAYKRRAEKIEVDLEEYNRMKEAD-PEFYRGASSLQYGT-APKISEDKIERM 235
              +    L   Y R  ++I+ D+E Y R++E    EF+  ++SL +GT  P  S ++I+RM
Sbjct:   118 DYAAAQLR-QYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVP--STEEIDRM 174

Query:   236 VKELKDQXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTA 295
             V +L+ Q             +D+ D+D IN RN  FN K ER YGKYT +IK NLERGTA
Sbjct:   175 VLDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTA 234

Query:   296 L 296
             +
Sbjct:   235 V 235

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|F1P0B5 SYF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 84/244 (34%), Positives = 118/244 (48%)

Query:    58 NRDRNKPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKAN-QTAMDADIRRKEAPAS 116
             + D  +P+A E   A+    K   R  +  EL LK NEARK N Q  ++ D R K  P  
Sbjct:     5 SEDEAQPSAAEVAAAQ----KREERLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPPNW 60

Query:   117 SRENSRGVSTQEW-LEQRKRKIGKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXPAP-F 174
               + +R     EW L+  ++K  K   A G D  R  +L+                 P  
Sbjct:    61 EAKKAR----LEWELKVEEKK--KECAARGEDYERVKLLEISAEDAERWERKKKRKNPDL 114

Query:   175 GWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKEADPE-FYRGASSLQYGT-APKISEDKI 232
             G+  +    L   Y+R   +I+ DLE+Y ++KE   E  Y  + SL +GT  P   ++ I
Sbjct:   115 GFSDYAAAQLR-QYQRLTRQIKPDLEQYEKLKEQYGEALYPTSDSLLHGTHVP--DKEGI 171

Query:   233 ERMVKELKDQXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLER 292
             +RMV +L+ Q             +D+ D+D IN RN  FN K ER YGKYT +IK NLER
Sbjct:   172 DRMVADLEKQIEKREKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLER 231

Query:   293 GTAL 296
             GTA+
Sbjct:   232 GTAV 235

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|I3LK70 SYF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 79/241 (32%), Positives = 118/241 (48%)

Query:    60 DRNKPAADEEKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRE 119
             ++  P   EE  A+    K   R  +  EL LK NEARK N   +  + +R + PA+   
Sbjct:    21 EQQPPLGPEELAAQ----KREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEA 76

Query:   120 NSRGVSTQEW-LEQRKRKIGKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXPAP-FGWE 177
                 +   EW L++ ++K  K   A G D  +  +L+                 P  G+ 
Sbjct:    77 KKARL---EWELQEEEKK--KECAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFS 131

Query:   178 VFNQRTLYGAYKRRAEKIEVDLEEYNRMKEAD-PEFYRGASSLQYGT-APKISEDKIERM 235
              +    L   Y R  ++I+ D+E Y R++E    EF+  ++SL +GT  P  S ++I+RM
Sbjct:   132 DYAAAQLR-QYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVP--STEEIDRM 188

Query:   236 VKELKDQXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTA 295
             V +L+ Q             +D+ D+D IN RN  FN K ER YGKYT +IK NLERGTA
Sbjct:   189 VVDLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTA 248

Query:   296 L 296
             +
Sbjct:   249 V 249

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|O95926 SYF2 "Pre-mRNA-splicing factor SYF2" [Homo sapiens (taxid:9606)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 79/239 (33%), Positives = 117/239 (48%)

Query:    65 AADEEKTAEGGFTKFTGRQARL--F-ELKLKFNEARKANQTAMDADIRRKEAPASSRENS 121
             +A+E   A         R+ RL  F EL L  NEARK N   +  + +R + PA+     
Sbjct:    13 SAEEGSLAAAAELAAQKREQRLRKFRELHLMRNEARKLNHQEVVEEDKRLKLPANWEAKK 72

Query:   122 RGVSTQEW-LEQRKRKIGKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXPAP-FGWEVF 179
               +   EW L++ ++K  K   A G D  +  +L+                 P  G+  +
Sbjct:    73 ARL---EWELKEEEKK--KECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDY 127

Query:   180 NQRTLYGAYKRRAEKIEVDLEEYNRMKEAD-PEFYRGASSLQYGT-APKISEDKIERMVK 237
                 L   Y R  ++I+ D+E Y R++E    EF+  ++SL +GT  P  S ++I+RMV 
Sbjct:   128 AAAQLR-QYHRLTKQIKPDMETYERLREKHGEEFFPTSNSLLHGTHVP--STEEIDRMVI 184

Query:   238 ELKDQXXXXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
             +L+ Q             +D+ D+D IN RN  FN K ER YGKYT +IK NLERGTA+
Sbjct:   185 DLEKQIEKRDKYSRRRPYNDDADIDYINERNAKFNKKAERFYGKYTAEIKQNLERGTAV 243

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

FB|FBgn0033556 CG12343 [Drosophila melanogaster (taxid:7227)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 71/232 (30%), Positives = 103/232 (44%)

Query:    69 EKTAEGGFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQE 128
             EKT      K   R+ARL +L  K  EAR  N   + A+  RK+ P +     R     E
Sbjct:     2 EKTKTAA-EKLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKNWEARKRQA---E 57

Query:   129 WLEQRKRKIGKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXPA-P-FGWEVFNQRTLYG 186
             W+    +   +  +A G D  R  +L+                  P  G+  +  +T   
Sbjct:    58 WILADDKARAEA-QAAGKDYERLKLLEVSAVDADRIEKKKKRKDNPDLGFSTYEAQTAR- 115

Query:   187 AYKRRAEKIEV-DLEEYNRMKEA-DPEFYRGASSLQYGTAPKISEDKIERMVKELKDQXX 244
              Y R  + +   DLE+Y R KE     FY GA +  +    K +   I +MV +L+ Q  
Sbjct:   116 QYNRLVKSMPARDLEKYERQKEELGDAFYGGAHTTLHSRT-KDTPGAINKMVTDLEQQIE 174

Query:   245 XXXXXXXXXXXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
                        +D+ DVD IN RN  FN K++R Y ++T +IK NLERGTA+
Sbjct:   175 RRKKYSRRRIYNDDADVDFINERNSKFNKKLDRFYSEHTAEIKQNLERGTAI 226

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q28XK6 Syf2 "Pre-mRNA-splicing factor Syf2" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 68/223 (30%), Positives = 99/223 (44%)

Query:    78 KFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKI 137
             K   R+ARL +L  K  EAR  N   + A+  RK+ P +     R     EWL     K 
Sbjct:    10 KLAERKARLLDLHKKRQEARTDNHQEVVAEDARKKLPKNWEARKRQA---EWL-LADDKA 65

Query:   138 GKLLEANGLDTSRAYMLDTQXXXXXXXXXXXXXPA-P-FGWEVFNQRTLYGAYKRRAEKI 195
              +  +A G D  R  +L+                  P  G+  +  +T    Y R  + +
Sbjct:    66 REDAQAAGKDYERLKLLEVSAIDAERIEKKKKRKDNPDLGFSTYEAQTAR-QYSRLVKGM 124

Query:   196 EV-DLEEYNRMK-EADPEFYRGASSLQYGTAPKISEDKIERMVKELKDQXXXXXXXXXXX 253
                D+E+Y + K E    FY G  +  +    K +   I +MV +L  Q           
Sbjct:   125 PARDMEKYEKQKAELGEAFYGGPHTTLHALT-KDTPAAINKMVNDLDQQIERRKKYSRRR 183

Query:   254 XXHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL 296
               +D+ DVD IN RN  FN K++R YG++T +IK NLERGTA+
Sbjct:   184 IYNDDADVDFINERNSKFNKKLDRFYGEHTAEIKQNLERGTAI 226

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0071004 "U2-type prespliceosome" evidence=ISS

GO:0071006 "U2-type catalytic step 1 spliceosome" evidence=ISS

GO:0071007 "U2-type catalytic step 2 spliceosome" evidence=ISS

GO:0071008 "U2-type post-mRNA release spliceosomal complex" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
pfam08231	157	pfam08231, SYF2, SYF2 splicing factor	5e-37

>gnl|CDD|219755 pfam08231, SYF2, SYF2 splicing factor

 Score =  128 bits (325), Expect = 5e-37
 Identities = 68/159 (42%), Positives = 91/159 (57%), Gaps = 11/159 (6%)

Query: 142 EANGLDTSRAYMLD----TQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEKIEV 197
           E  G+D  R   LD      E  + K KK+ K    FG+  + Q  LY AYKRR + ++ 
Sbjct: 1   EEQGIDFERKRALDWSAEESEKWDKKKKKK-KNKDDFGFNDYEQDALYRAYKRRLKNLKP 59

Query: 198 DLEEYNRMKEADPEFYRGAS-----SLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRR 252
           DLEEY + KEA  E +         S+ Y +     E  I+R+V++L+ Q+EKR  FSRR
Sbjct: 60  DLEEYEKQKEAVGEKFYATFYRTADSILYTSNKPTEEA-IDRLVQDLEKQQEKRLKFSRR 118

Query: 253 RRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLE 291
           R F DE D+D IN RN+ FN K++R Y KYT +IK NLE
Sbjct: 119 RGFDDEADIDYINERNKKFNKKLDRFYDKYTAEIKQNLE 157

Proteins in this family are involved in cell cycle progression and pre-mRNA splicing. Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
KOG2609	228	consensus Cyclin D-interacting protein GCIP [Cell	100.0
PF08231	153	SYF2: SYF2 splicing factor; InterPro: IPR013260 Pr	100.0

>KOG2609 consensus Cyclin D-interacting protein GCIP [Cell cycle control, cell division, chromosome partitioning; RNA processing and modification]

Probab=100.00  E-value=7.8e-56  Score=396.82  Aligned_cols=216  Identities=39%  Similarity=0.590  Sum_probs=195.6

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhccccchHHHHHHHHHHHhHHHHhcCCChHHHHHH
Q 045904           75 GFTKFTGRQARLFELKLKFNEARKANQTAMDADIRRKEAPASSRENSRGVSTQEWLEQRKRKIGKLLEANGLDTSRAYML  154 (296)
Q Consensus        75 ~~~~m~~r~~RLkeLk~K~neark~N~keVv~E~kr~k~p~~ye~~~~~~~k~~~~~~~~~~~~~~~~~~G~D~eR~ytl  154 (296)
                      +...+..|++||++|+++|++|++.||.+|++|++++++|++|+  ++ .++..|.. .++.++.++.+.|.|+++.+++
T Consensus         7 ~~~~~~~r~kR~~~L~k~R~eARk~nheeVv~E~~r~klp~~~e--a~-~~r~~~E~-~e~~~~~~~~a~G~D~er~r~l   82 (228)
T KOG2609|consen    7 DAKKLELRRKRVRELHKKRNEARKENHEEVVEEDRRMKLPKNWE--AR-KERKEWEL-KEKEKKKEAEAQGLDYERRRLL   82 (228)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhchhhccCCchhH--HH-HHHHhhhh-hHHHHHHHHHhccccHHHHhcc
Confidence            45568999999999999999999999999999999999999998  43 33444544 4445788999999999998766


Q ss_pred             H----HHHHHHHHHHHhccCCCCCchhhhhHhhHHHHHHHHHhccCCCHHHHHHhhh-cC-CcccCCCCccccCCCCCCC
Q 045904          155 D----TQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKE-AD-PEFYRGASSLQYGTAPKIS  228 (296)
Q Consensus       155 e----~aE~wekK~kKK~kk~~~~g~~~~~q~A~yr~YkK~ik~lk~d~e~YekqK~-~~-~~fy~~adsl~~g~~~kps  228 (296)
                      +    .++.|+++..++.+-+++.||++|...++ ++|.+++..++||++.|.++++ .| ..||+++.++.+| +++||
T Consensus        83 e~s~~~ser~~k~~~kk~k~n~~~~fs~Y~~qt~-~qynR~~~a~~~D~e~y~k~kE~~g~~~~~~~a~~~l~~-t~k~~  160 (228)
T KOG2609|consen   83 EGSAEDSERWEKKYDKKRKLNQDLGFSDYAAQTL-RQYNRLTAADPPDLEKYEKVKERLGSEAFYPTATTLLHG-THKPD  160 (228)
T ss_pred             cccHHHHHHHHHhhhcccccchhhhhhHHHHHHH-HHHhhhhhccchhhhhHHHHHHhhchhhhcccchhhccc-CCCCC
Confidence            5    58889998887777789999999999996 9999999999999999999876 44 6899999999998 58999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccccHHHHHHHHHHhchhhHHHHhhhhcccCC
Q 045904          229 EDKIERMVKELKDQEEKRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLERGTAL  296 (296)
Q Consensus       229 ~eaVdrLV~dL~k~~~kR~kfsRRR~~~dd~DvdYINeRNk~FNkKL~R~y~kyT~EIk~NLERGTAl  296 (296)
                      .++||+||.+|.+|+++|.+|||||++++++|||||||||++||+||+|||+|||.|||+||||||||
T Consensus       161 ~~~idKl~~~L~~q~kkR~k~srRR~~n~d~~idfINerN~kFNkKl~R~ysKyT~eIK~nLERGTAl  228 (228)
T KOG2609|consen  161 TEAIDKLVKDLEKQIKKRYKYSRRRMYNEDADIDFINERNKKFNKKLERFYSKYTEEIKQNLERGTAL  228 (228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhHHHHhHHHHHHHHHHHHhhhhHHHHHHHhccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999997

>PF08231 SYF2: SYF2 splicing factor; InterPro: IPR013260 Proteins in this entry are involved in cell cycle progression and pre-mRNA splicing [, ]

Probab=100.00  E-value=2.4e-48  Score=335.55  Aligned_cols=147  Identities=48%  Similarity=0.780  Sum_probs=137.2

Q ss_pred             hcCCChHHH----HHHHHHHHHHHHHHHhccCCCCCchhhhhHhhHHHHHHHHHhccCCCHHHHHHhhhcCC-cccCCCC
Q 045904          143 ANGLDTSRA----YMLDTQEAAEAKYKKRAKEPAPFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKEADP-EFYRGAS  217 (296)
Q Consensus       143 ~~G~D~eR~----ytle~aE~wekK~kKK~kk~~~~g~~~~~q~A~yr~YkK~ik~lk~d~e~YekqK~~~~-~fy~~ad  217 (296)
                      +.|+|++|.    ||++++|.|+++.++|++. .++||++|+++|+|++|+|+|++|+||++.|++++...+ .||++++
T Consensus         2 ~~g~D~er~k~l~~t~~e~E~w~~K~~kk~~~-~~~g~~~~~~~a~~~~Y~K~~~~l~~d~e~Y~~~k~~~~~~fy~~~~   80 (153)
T PF08231_consen    2 EKGEDYERKKLLNYTAEEAEKWEKKKKKKKKN-KDFGFSDYNQDALYRQYKKRIKNLKPDMEEYEKQKEKLGEKFYRDAD   80 (153)
T ss_pred             CccccHHHHHHHHhhHHHHHHHHHHHHhccCC-CCcchhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhccccccCCCc
Confidence            579999985    7888999999988777554 689999999999889999999999999999999998544 4999999


Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCcccccccHHHHHHHHHHhchhhHHHHhhhh
Q 045904          218 SLQYGTAPKISEDKIERMVKELKDQEEKRKSFSRRRRFHDEKDVDSINHRNEHFNSKIERAYGKYTLDIKNNLE  291 (296)
Q Consensus       218 sl~~g~~~kps~eaVdrLV~dL~k~~~kR~kfsRRR~~~dd~DvdYINeRNk~FNkKL~R~y~kyT~EIk~NLE  291 (296)
                      +|.|| .++|++++||+||++|++++++|.+|||||.+++++||||||+||++||+||+||||+||+|||+|||
T Consensus        81 ~l~~~-~~~~~~e~vdrlv~~l~k~~~kR~k~sRrR~~~d~~dv~YINerNk~FN~KL~R~y~kyT~eIk~nlE  153 (153)
T PF08231_consen   81 SLVYG-SHKPSPEAVDRLVNDLEKQIEKRKKFSRRRKFDDDADVDYINERNKQFNKKLERFYDKYTAEIKQNLE  153 (153)
T ss_pred             ccccC-CCCCCHHHHHHHHHHHHHHHHHHHHHhHhcccccCCCcCchhhhhHHHHHHHHHHHhHhHHHHHHhcC
Confidence            99999 58899999999999999999999999999999999999999999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 52/384 (13%), Positives = 102/384 (26%), Gaps = 120/384 (31%)

Query: 5   ITWVQEDLRKREERAEVMDERRGRIINASSPYSDSEEESDSDESKIMAAKRYLNR----- 59
           I W+  +L+       V++  +  +      ++   + S + + +I + +  L R     
Sbjct: 184 IFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 60  ---------D---------------------RNKPAADEEKTA----------EGGFTKF 79
                                          R K   D    A              T  
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 80  TGRQARLFELKLKFN------EARKANQTAMDADIRRKEAPASSRENSRGVST-QEWLEQ 132
             +   L    L         E    N   + + I       S R+   G++T   W   
Sbjct: 302 EVKS--LLLKYLDCRPQDLPREVLTTNPRRL-SII-----AESIRD---GLATWDNWKHV 350

Query: 133 RKRKIGKLLEA--NGLDTS--RAY-------------------ML-------DTQEAAEA 162
              K+  ++E+  N L+ +  R                     ++       D       
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 163 KYKKR--AKEPAPFGWEVFNQRTLYGAYKRRAEKIEVDLEEYNRMKEADPEFYRGASSLQ 220
            +K     K+P           ++   Y     K+E +   +  + +     Y    +  
Sbjct: 411 LHKYSLVEKQPKES------TISIPSIYLELKVKLENEYALHRSIVDH----YNIPKTFD 460

Query: 221 YGTAPKISEDK-----IERMVKELKDQEEKRKSFSRRR---RFHDEK---DVDSINHRNE 269
                    D+     I   +K + +  E+   F       RF ++K   D  + N    
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNI-EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519

Query: 270 HFNSKIE-RAYGKYTLDIKNNLER 292
             N+  + + Y  Y  D     ER
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYER 543

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00