Citrus Sinensis ID: 045926

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MLRSSFLRRGYNKVAGIFGRAEAKKQDFPVLEGHPAAQESAEVALESRVTVQDNVKKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQPMEMVEIM
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccccccccccEEEEEEEEEccccccccccEEEEEEEcccccccHHHHHHHHHHccccccccccccccccccccccEEcccccccEEccccccccccEEEEEcccccccEEEEccccHHHHHHHHHcccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHccccccEEcccccccccccccccccHHHHHHHHHHHHHHHccccHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccHHHHccccccccccccccEEEEEEEEccccccccccccEEEEEcccccHHHHHHHHHHHcccccccEEEcccccccccccEEEcccccEEEEEEcccccccccEEEcccccHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHEEEHcccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHccccEEEEEcEEccccccccccccHHHHHHHHHHHHHHHHHHHHHEcc
Coil and Loop (DISEMBL)
mlrssflrrgYNKVAGIFGraeakkqdfpvleghpaaqESAEVALESRVTVQDNVKKVMKEFRIYrwnpdrpdskpflqsyhvdlsecgpMVLDALQKIKAETdsslsyrrscregicgscamniggtntvaclkpidgdtskptiitplphMFVIKDLVVDLTNFYQQyksiepwlktnmvpkdgreyrqspadrkkldglyecilcaccttscpsywwnpeeylgpAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIknctatcpkgldpaDAIHKMKTKHMLSQPMEMVEIM
Flexible Loop (DISEMBL)
mlrssflrrgynkvaGIFGRAEAKKQDFPVLEGHPAAQESAEVALESRVTVQDNVKKVMKEFriyrwnpdrpdsKPFLQSYHVDLSECGPMVLDALQKIKAetdsslsyrrSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQyksiepwlktnmvpkdGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIknctatcpkgldpADAIHKMKTkhmlsqpmemveim
Low Complexity Region (SEG)
MLRSSFLRRGYNKVAGIFGRAEAKKQDFPVLEGHPAAQESAEVALESRVTVQDNVKKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQPMEMVEIM
Disordered region (IsUnstruct)
********RGYNKVAGIFGR***************************RVTVQDNVKKVMKEFRIYRWNPD****KPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMV***************KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL*************************
Disordered Region (DISOPRED)
*************************************************************FRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK*****************RKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQPMEMVEIM
Disordered Region (DISEMBL)
********RGYNKVAGIFGRAEAKKQDFPVLEGHPAAQESAEVALESRVTVQDNVKKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQPMEMVEIM
Disordered Region (DISPRO)
*LRSSFLRRGYNKVAGIFGRAEAKK*D*****************************KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNM******EYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQPMEMVEIM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLRSSFLRRGYNKVAGIFGRAEAKKQDFPVLEGHPAAQESAEVALESRVTVQDNVKKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQPMEMVEIM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q9FJP9	309	Succinate dehydrogenase [	yes	no	0.907	0.886	0.768	1e-126
P21801	266	Succinate dehydrogenase [	yes	no	0.754	0.857	0.672	2e-91
Q6FWS8	253	Succinate dehydrogenase [	no	no	0.761	0.909	0.662	3e-90
Q9YHT2	290	Succinate dehydrogenase [	yes	no	0.754	0.786	0.673	8e-89
Q8LB02	280	Succinate dehydrogenase [	no	no	0.748	0.807	0.695	1e-88
Q8LBZ7	279	Succinate dehydrogenase [	no	no	0.890	0.964	0.598	2e-88
Q70KF8	283	Succinate dehydrogenase [	N/A	no	0.751	0.802	0.663	2e-88
P21911	275	Succinate dehydrogenase [	yes	no	0.748	0.821	0.659	2e-87
P21914	297	Succinate dehydrogenase [	yes	no	0.827	0.841	0.598	3e-87
O42772	297	Succinate dehydrogenase [	N/A	no	0.751	0.764	0.662	4e-87

>sp|Q9FJP9|DHSB3_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial OS=Arabidopsis thaliana GN=SDH2-3 PE=2 SV=1

 Score =  451 bits (1161), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/277 (76%), Positives = 240/277 (86%), Gaps = 3/277 (1%)

Query: 27  DFPVLEGHPAAQESAEVALESRVTVQDNV---KKVMKEFRIYRWNPDRPDSKPFLQSYHV 83
           DFP+L GH AAQ+ ++  L+S+   ++     K+V KEF+IYRWNPD+P+SKPFLQS+ V
Sbjct: 31  DFPILNGHKAAQDLSKDTLKSQDITKEKEGQHKEVKKEFKIYRWNPDKPNSKPFLQSFFV 90

Query: 84  DLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSK 143
           DLS CGPMVLD LQKIKAE D+SLSYRRSCREGICGSC+MNI GTNTVACLKPI+ +TSK
Sbjct: 91  DLSSCGPMVLDVLQKIKAEDDASLSYRRSCREGICGSCSMNIDGTNTVACLKPINPNTSK 150

Query: 144 PTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLY 203
           PTIITPLPHM+VIKDLVVDLTNFYQQYKS+EPWLKT   PKDGRE+RQSP DRKKLDGLY
Sbjct: 151 PTIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWLKTRKPPKDGREHRQSPKDRKKLDGLY 210

Query: 204 ECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRC 263
           ECILCACCTTSCPSYWWNPEE+ GPAALL AYRWI DSRDE  EERLQA+TE E K+YRC
Sbjct: 211 ECILCACCTTSCPSYWWNPEEFPGPAALLQAYRWISDSRDEYREERLQAITESETKVYRC 270

Query: 264 RAIKNCTATCPKGLDPADAIHKMKTKHMLSQPMEMVE 300
           RAIKNCTATCPKGL+PA AI KMK+KH+LS P+   E
Sbjct: 271 RAIKNCTATCPKGLNPASAILKMKSKHLLSDPLVRTE 307

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 5EC: .EC: 1

>sp|P21801|DHSB_YEAST Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDH2 PE=1 SV=1

 Score =  335 bits (859), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 154/229 (67%), Positives = 184/229 (80%), Gaps = 1/229 (0%)

Query: 59  MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
           +K F++YRWNPD P +KP LQSY VDL++CGPMVLDAL KIK E DS+L++RRSCREGIC
Sbjct: 33  LKTFKVYRWNPDEPSAKPHLQSYQVDLNDCGPMVLDALLKIKDEQDSTLTFRRSCREGIC 92

Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
           GSCAMNIGG NT+AC+  ID + SK   I PLPHMF++KDLV DLTNFYQQYKSI+P+L+
Sbjct: 93  GSCAMNIGGRNTLACICKIDQNESKQLKIYPLPHMFIVKDLVPDLTNFYQQYKSIQPYLQ 152

Query: 179 TNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWI 238
            +  PKDG E  QS  DRKKLDGLYECILCACC+TSCPSYWWN E+YLGPA L+ AYRW+
Sbjct: 153 RSSFPKDGTEVLQSIEDRKKLDGLYECILCACCSTSCPSYWWNQEQYLGPAVLMQAYRWL 212

Query: 239 CDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
            DSRD+ T+ R +A+  +   LYRC  I NCT TCPKGL+P  AI ++K
Sbjct: 213 IDSRDQATKTR-KAMLNNSMSLYRCHTIMNCTRTCPKGLNPGLAIAEIK 260

Subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). SDH1 and SDH2 form the catalytic dimer. Electrons flow from succinate to the FAD bound to SDH1, and sequentially through the iron-sulfur clusters bound to SDH2 and enter the membrane dimer formed by SDH3 and SDH4.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|Q6FWS8|DHSB_CANGA Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SDH2 PE=3 SV=1

 Score =  331 bits (849), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 153/231 (66%), Positives = 182/231 (78%), Gaps = 1/231 (0%)

Query: 59  MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
           +K F+IYRWNPD+P  KP LQ Y VDL +CGPMVLDAL KIK E D++L++RRSCREGIC
Sbjct: 20  LKTFKIYRWNPDKPTEKPHLQEYKVDLEDCGPMVLDALLKIKNEQDATLTFRRSCREGIC 79

Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
           GSCAMNIGG NT+ACL  ID D SK T I PLPHMF++KDLV DLT FYQQYKSI+P+L+
Sbjct: 80  GSCAMNIGGANTLACLCKIDQDESKTTKIYPLPHMFIVKDLVPDLTGFYQQYKSIQPYLQ 139

Query: 179 TNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWI 238
               P DG+E  QS  DRKKLDGLYECILCACC+TSCPSYWWN EEYLGPA L+ AYRW+
Sbjct: 140 RTDYPADGKEVLQSIDDRKKLDGLYECILCACCSTSCPSYWWNQEEYLGPAVLMQAYRWL 199

Query: 239 CDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTK 289
            DSRD+ T+ R + + ++   LYRC  I NCT TCPKGL+P  +I ++K +
Sbjct: 200 IDSRDQATKAR-RTMLQNSMSLYRCHTIMNCTRTCPKGLNPGRSIAEIKKQ 249

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|Q9YHT2|DHSB_CHICK Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallus gallus GN=SDHB PE=1 SV=1

 Score =  327 bits (837), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 155/230 (67%), Positives = 183/230 (79%), Gaps = 2/230 (0%)

Query: 59  MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
           +K+F IYRW+PD+P  KP +Q+Y VDL++CGPMVLDAL KIK E DS+L++RRSCREGIC
Sbjct: 49  IKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGIC 108

Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
           GSCAMNI G NT+AC K ID D SK T I PLPHM+V+KDLV DL+NFY QYKSIEP+LK
Sbjct: 109 GSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLK 168

Query: 179 TNMVPKDGRE-YRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRW 237
                K G+E Y QS  DR+KLDGLYECILCACC+TSCPSYWWN ++YLGPA L+ AYRW
Sbjct: 169 KKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRW 228

Query: 238 ICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
           + DSRD+ TEERL  L +D   LYRC  I NCT TCPKGL+P  AI ++K
Sbjct: 229 MIDSRDDYTEERLAQL-QDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIK 277

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|Q8LB02|DHSB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH2-2 PE=1 SV=2

 Score =  326 bits (836), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 160/230 (69%), Positives = 178/230 (77%), Gaps = 4/230 (1%)

Query: 59  MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
           +K F+IYRWNPD P  KP LQ Y +DL +CGPMVLDAL KIK E D SL++RRSCREGIC
Sbjct: 48  LKTFQIYRWNPDNP-GKPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGIC 106

Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
           GSCAMNI G N +ACL  I+   SK T ITPLPHMFVIKDLVVD+TNFY QYKSIEPWLK
Sbjct: 107 GSCAMNIDGCNGLACLTKIESG-SKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLK 165

Query: 179 -TNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRW 237
             N     G+E  QS  DR KLDG+YECILCACC+TSCPSYWWNPE YLGPAALLHA RW
Sbjct: 166 RKNPASVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRW 225

Query: 238 ICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
           I DSRDE T+ERL+A+ +DE KLYRC  I NC   CPKGL+P   I  +K
Sbjct: 226 ISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIK 274

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|Q8LBZ7|DHSB1_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH2-1 PE=1 SV=2

 Score =  325 bits (834), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 167/279 (59%), Positives = 192/279 (68%), Gaps = 10/279 (3%)

Query: 14  VAGIFGRAEAKKQDFPVLEGH--PAAQESAEVALESRVTVQDNVKKVMKEFRIYRWNPDR 71
            +G+ GR    K           PA   S     E++ +        +K F+IYRWNPD 
Sbjct: 2   ASGLIGRLVGTKPSKLATAARLIPARWTSTGAEAETKASSGGGRGSNLKTFQIYRWNPDN 61

Query: 72  PDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTV 131
           P  KP LQ+Y +DL +CGPMVLDAL KIK E D SL++RRSCREGICGSCAMNI G N +
Sbjct: 62  P-GKPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGL 120

Query: 132 ACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNM---VPKDGRE 188
           ACL  I  + S+ T ITPLPHMFVIKDLVVD+TNFY QYKSIEPWLK      VP   +E
Sbjct: 121 ACLTKIQDEASE-TTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVP--AKE 177

Query: 189 YRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEE 248
             QS  DR KLDG+YECILCACC+TSCPSYWWNPE YLGPAALLHA RWI DSRDE T+E
Sbjct: 178 ILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKE 237

Query: 249 RLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
           RL+A+ +DE KLYRC  I NC   CPKGL+P   I  +K
Sbjct: 238 RLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIK 275

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|Q70KF8|DHSB_UROFA Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Uromyces fabae GN=SDH2 PE=3 SV=1

 Score =  325 bits (834), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 152/229 (66%), Positives = 181/229 (79%), Gaps = 2/229 (0%)

Query: 59  MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
           +KEF IYRWNPD P  KP LQ+Y +DL +CGPMVLDAL KIK E D +L++RRSCREGIC
Sbjct: 51  VKEFSIYRWNPDEPSKKPTLQTYSIDLKKCGPMVLDALIKIKNELDPTLTFRRSCREGIC 110

Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
           GSCAMNI G NT+ACLK I+ +TS P  I PLPHM++IKDLV D+T+FY+QYKSIEP+LK
Sbjct: 111 GSCAMNIDGVNTLACLKRINKETSAPVKIYPLPHMYIIKDLVPDMTHFYKQYKSIEPFLK 170

Query: 179 TNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWI 238
            +  P  G E+ QSP DRKKLDG+YECILCACC+TSCPSYWWN +EYLGPA L+ AYRW+
Sbjct: 171 NDNPPAQG-EFLQSPEDRKKLDGMYECILCACCSTSCPSYWWNQDEYLGPAVLMQAYRWM 229

Query: 239 CDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
            DSRD   E+R + L ++   LYRC  I NCT TCPKGL+PA AI  +K
Sbjct: 230 ADSRDSYGEDRKEKL-QNTLSLYRCHTIFNCTKTCPKGLNPAKAISHIK 277

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Uromyces fabae (taxid: 55588)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|P21911|DHSB_SCHPO Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sdh2 PE=3 SV=3

 Score =  322 bits (826), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 151/229 (65%), Positives = 182/229 (79%), Gaps = 3/229 (1%)

Query: 59  MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
           +K F IYRWNP++P+ KP LQ Y VDL++CGPMVLDAL KIK E D +L++RRSCREGIC
Sbjct: 44  LKTFEIYRWNPEKPEVKPKLQKYTVDLTKCGPMVLDALIKIKNEQDPTLTFRRSCREGIC 103

Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
           GSCAMNI G+NT+AC+  I  D +KPT I PLPH F++KDLV DLT FY+QYKSIEPWL+
Sbjct: 104 GSCAMNINGSNTLACICNIKKD-NKPTKIYPLPHCFIVKDLVPDLTYFYKQYKSIEPWLQ 162

Query: 179 TNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWI 238
            + +PKD +E+ QS ADR KLDGLYECILCACC+TSCPSYWWN EEYLGPA L+ AYRWI
Sbjct: 163 NDNIPKD-KEFYQSRADRAKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLMQAYRWI 221

Query: 239 CDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
            DSRD+ T +RL  + ++   +YRC  I NC  TCPKGL+P  AI K+K
Sbjct: 222 IDSRDQATAKRLDVM-QNSMSVYRCHTIMNCARTCPKGLNPGLAIAKVK 269

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|P21914|DHSB_DROME Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Drosophila melanogaster GN=SdhB PE=2 SV=2

 Score =  322 bits (824), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 152/254 (59%), Positives = 188/254 (74%), Gaps = 4/254 (1%)

Query: 37  AQESAEVALESRVTVQDNVKKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDAL 96
           A  +    LE +   ++  +  +K+F IYRWNPD    KP++Q+Y VDL ECGPMVLDAL
Sbjct: 24  AISNGTAQLEQQAQPKEAQEPQIKKFEIYRWNPDNAGEKPYMQTYEVDLRECGPMVLDAL 83

Query: 97  QKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVI 156
            KIK E D +L++RRSCREGICGSCAMNIGGTNT+AC+  ID +TSK   + PLPHM+V+
Sbjct: 84  IKIKNEMDPTLTFRRSCREGICGSCAMNIGGTNTLACISKIDINTSKSLKVYPLPHMYVV 143

Query: 157 KDLVVDLTNFYQQYKSIEPWL--KTNMVPKDGR-EYRQSPADRKKLDGLYECILCACCTT 213
           +DLV D+ NFY+QY++I+PWL  K     K G+ +Y QS  DR KLDGLYECILCACC+T
Sbjct: 144 RDLVPDMNNFYEQYRNIQPWLQRKNEAGEKKGKAQYLQSVEDRSKLDGLYECILCACCST 203

Query: 214 SCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATC 273
           SCPSYWWN E+YLGPA L+ AYRWI DSRDE + ERL  L +D   +YRC  I NCT TC
Sbjct: 204 SCPSYWWNAEKYLGPAVLMQAYRWIIDSRDENSAERLNKL-KDPFSVYRCHTIMNCTRTC 262

Query: 274 PKGLDPADAIHKMK 287
           PKGL+P  AI ++K
Sbjct: 263 PKGLNPGRAIAEIK 276

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|O42772|DHSB_MYCGR Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Mycosphaerella graminicola GN=SDH2 PE=3 SV=1

 Score =  321 bits (822), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 151/228 (66%), Positives = 180/228 (78%), Gaps = 1/228 (0%)

Query: 60  KEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICG 119
           K F IYRWNPD+P  KP +QSY +DL++ GPM+LDAL +IK E D +L++RRSCREGICG
Sbjct: 64  KTFHIYRWNPDQPTDKPRMQSYTLDLNKTGPMMLDALIRIKNEVDPTLTFRRSCREGICG 123

Query: 120 SCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKT 179
           SCAMNI G NT+ACL  I  DT+K T I PLPH +V+KDLV D+T FY+QYKSI+P+L+ 
Sbjct: 124 SCAMNIDGVNTLACLCRIPTDTAKETRIYPLPHTYVVKDLVPDMTQFYKQYKSIKPYLQR 183

Query: 180 NMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWIC 239
           +  P DG+E RQS ADRKKLDGLYECILCACC+TSCPSYWWN EEYLGPA LL +YRWI 
Sbjct: 184 DTAPPDGKENRQSVADRKKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLLQSYRWIN 243

Query: 240 DSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
           DSRDE T +R  AL  +   LYRC  I NC+ TCPKGL+PA AI ++K
Sbjct: 244 DSRDEKTAQRKDAL-NNSMSLYRCHTILNCSRTCPKGLNPALAIAEIK 290

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).

Mycosphaerella graminicola (taxid: 1047171)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
TAIR|locus:504954878	309	SDH2-3 "succinate dehydrogenas	0.907	0.886	0.768	1.6e-118
SGD|S000003964	266	SDH2 "Iron-sulfur protein subu	0.754	0.857	0.672	1.3e-86
TAIR|locus:2168818	280	SDH2-2 "succinate dehydrogenas	0.748	0.807	0.695	3e-85
UNIPROTKB|F1NNF7	290	SDHB "Succinate dehydrogenase	0.754	0.786	0.673	1.7e-84
UNIPROTKB|Q9YHT2	290	SDHB "Succinate dehydrogenase	0.754	0.786	0.673	1.7e-84
TAIR|locus:2086716	279	SDH2-1 "succinate dehydrogenas	0.894	0.967	0.597	2.1e-84
CGD|CAL0000978	263	SDH2 [Candida albicans (taxid:	0.824	0.946	0.604	1.5e-83
UNIPROTKB|Q59QN7	263	SDH2 "Putative uncharacterized	0.824	0.946	0.604	1.5e-83
POMBASE|SPAC140.01	275	sdh2 "succinate dehydrogenase	0.748	0.821	0.659	1.9e-83
FB|FBgn0014028	297	SdhB "Succinate dehydrogenase	0.844	0.858	0.590	5e-83

TAIR|locus:504954878 SDH2-3 "succinate dehydrogenase 2-3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
 Identities = 213/277 (76%), Positives = 240/277 (86%)

Query:    27 DFPVLEGHPAAQESAEVALESRVTVQDNV---KKVMKEFRIYRWNPDRPDSKPFLQSYHV 83
             DFP+L GH AAQ+ ++  L+S+   ++     K+V KEF+IYRWNPD+P+SKPFLQS+ V
Sbjct:    31 DFPILNGHKAAQDLSKDTLKSQDITKEKEGQHKEVKKEFKIYRWNPDKPNSKPFLQSFFV 90

Query:    84 DLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSK 143
             DLS CGPMVLD LQKIKAE D+SLSYRRSCREGICGSC+MNI GTNTVACLKPI+ +TSK
Sbjct:    91 DLSSCGPMVLDVLQKIKAEDDASLSYRRSCREGICGSCSMNIDGTNTVACLKPINPNTSK 150

Query:   144 PTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLY 203
             PTIITPLPHM+VIKDLVVDLTNFYQQYKS+EPWLKT   PKDGRE+RQSP DRKKLDGLY
Sbjct:   151 PTIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWLKTRKPPKDGREHRQSPKDRKKLDGLY 210

Query:   204 ECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRC 263
             ECILCACCTTSCPSYWWNPEE+ GPAALL AYRWI DSRDE  EERLQA+TE E K+YRC
Sbjct:   211 ECILCACCTTSCPSYWWNPEEFPGPAALLQAYRWISDSRDEYREERLQAITESETKVYRC 270

Query:   264 RAIKNCTATCPKGLDPADAIHKMKTKHMLSQPMEMVE 300
             RAIKNCTATCPKGL+PA AI KMK+KH+LS P+   E
Sbjct:   271 RAIKNCTATCPKGLNPASAILKMKSKHLLSDPLVRTE 307

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000104 "succinate dehydrogenase activity" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0045281 "succinate dehydrogenase complex" evidence=ISS

SGD|S000003964 SDH2 "Iron-sulfur protein subunit of succinate dehydrogenase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 154/229 (67%), Positives = 184/229 (80%)

Query:    59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
             +K F++YRWNPD P +KP LQSY VDL++CGPMVLDAL KIK E DS+L++RRSCREGIC
Sbjct:    33 LKTFKVYRWNPDEPSAKPHLQSYQVDLNDCGPMVLDALLKIKDEQDSTLTFRRSCREGIC 92

Query:   119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
             GSCAMNIGG NT+AC+  ID + SK   I PLPHMF++KDLV DLTNFYQQYKSI+P+L+
Sbjct:    93 GSCAMNIGGRNTLACICKIDQNESKQLKIYPLPHMFIVKDLVPDLTNFYQQYKSIQPYLQ 152

Query:   179 TNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWI 238
              +  PKDG E  QS  DRKKLDGLYECILCACC+TSCPSYWWN E+YLGPA L+ AYRW+
Sbjct:   153 RSSFPKDGTEVLQSIEDRKKLDGLYECILCACCSTSCPSYWWNQEQYLGPAVLMQAYRWL 212

Query:   239 CDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
              DSRD+ T+ R +A+  +   LYRC  I NCT TCPKGL+P  AI ++K
Sbjct:   213 IDSRDQATKTR-KAMLNNSMSLYRCHTIMNCTRTCPKGLNPGLAIAEIK 260

GO:0005749 "mitochondrial respiratory chain complex II" evidence=IDA

GO:0008177 "succinate dehydrogenase (ubiquinone) activity" evidence=IEA;IGI;IMP;IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA;IMP

GO:0045333 "cellular respiration" evidence=IGI;IMP

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2168818 SDH2-2 "succinate dehydrogenase 2-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
 Identities = 160/230 (69%), Positives = 178/230 (77%)

Query:    59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
             +K F+IYRWNPD P  KP LQ Y +DL +CGPMVLDAL KIK E D SL++RRSCREGIC
Sbjct:    48 LKTFQIYRWNPDNP-GKPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGIC 106

Query:   119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
             GSCAMNI G N +ACL  I+   SK T ITPLPHMFVIKDLVVD+TNFY QYKSIEPWLK
Sbjct:   107 GSCAMNIDGCNGLACLTKIESG-SKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLK 165

Query:   179 T-NMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRW 237
               N     G+E  QS  DR KLDG+YECILCACC+TSCPSYWWNPE YLGPAALLHA RW
Sbjct:   166 RKNPASVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRW 225

Query:   238 ICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
             I DSRDE T+ERL+A+ +DE KLYRC  I NC   CPKGL+P   I  +K
Sbjct:   226 ISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIK 274

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000104 "succinate dehydrogenase activity" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0045281 "succinate dehydrogenase complex" evidence=ISS

GO:0005749 "mitochondrial respiratory chain complex II" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

UNIPROTKB|F1NNF7 SDHB "Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 155/230 (67%), Positives = 183/230 (79%)

Query:    59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
             +K+F IYRW+PD+P  KP +Q+Y VDL++CGPMVLDAL KIK E DS+L++RRSCREGIC
Sbjct:    49 IKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGIC 108

Query:   119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
             GSCAMNI G NT+AC K ID D SK T I PLPHM+V+KDLV DL+NFY QYKSIEP+LK
Sbjct:   109 GSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLK 168

Query:   179 TNMVPKDGRE-YRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRW 237
                  K G+E Y QS  DR+KLDGLYECILCACC+TSCPSYWWN ++YLGPA L+ AYRW
Sbjct:   169 KKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRW 228

Query:   238 ICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
             + DSRD+ TEERL  L +D   LYRC  I NCT TCPKGL+P  AI ++K
Sbjct:   229 MIDSRDDYTEERLAQL-QDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIK 277

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9YHT2 SDHB "Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 155/230 (67%), Positives = 183/230 (79%)

Query:    59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
             +K+F IYRW+PD+P  KP +Q+Y VDL++CGPMVLDAL KIK E DS+L++RRSCREGIC
Sbjct:    49 IKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGIC 108

Query:   119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
             GSCAMNI G NT+AC K ID D SK T I PLPHM+V+KDLV DL+NFY QYKSIEP+LK
Sbjct:   109 GSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLK 168

Query:   179 TNMVPKDGRE-YRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRW 237
                  K G+E Y QS  DR+KLDGLYECILCACC+TSCPSYWWN ++YLGPA L+ AYRW
Sbjct:   169 KKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRW 228

Query:   238 ICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
             + DSRD+ TEERL  L +D   LYRC  I NCT TCPKGL+P  AI ++K
Sbjct:   229 MIDSRDDYTEERLAQL-QDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIK 277

GO:0009055 "electron carrier activity" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0008177 "succinate dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA;TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=ISS

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005749 "mitochondrial respiratory chain complex II" evidence=ISS

GO:0048039 "ubiquinone binding" evidence=ISS

GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=ISS

TAIR|locus:2086716 SDH2-1 "succinate dehydrogenase 2-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
 Identities = 165/276 (59%), Positives = 190/276 (68%)

Query:    15 AGIFGRAEAKKQDFPVLEGH--PAAQESAEVALESRVTVQDNVKKVMKEFRIYRWNPDRP 72
             +G+ GR    K           PA   S     E++ +        +K F+IYRWNPD P
Sbjct:     3 SGLIGRLVGTKPSKLATAARLIPARWTSTGAEAETKASSGGGRGSNLKTFQIYRWNPDNP 62

Query:    73 DSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVA 132
               KP LQ+Y +DL +CGPMVLDAL KIK E D SL++RRSCREGICGSCAMNI G N +A
Sbjct:    63 -GKPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLA 121

Query:   133 CLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPK-DGREYRQ 191
             CL  I  + S+ TI TPLPHMFVIKDLVVD+TNFY QYKSIEPWLK         +E  Q
Sbjct:   122 CLTKIQDEASETTI-TPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVPAKEILQ 180

Query:   192 SPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQ 251
             S  DR KLDG+YECILCACC+TSCPSYWWNPE YLGPAALLHA RWI DSRDE T+ERL+
Sbjct:   181 SKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLE 240

Query:   252 ALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
             A+ +DE KLYRC  I NC   CPKGL+P   I  +K
Sbjct:   241 AI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIK 275

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000104 "succinate dehydrogenase activity" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0045281 "succinate dehydrogenase complex" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IDA

CGD|CAL0000978 SDH2 [Candida albicans (taxid:5476)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 151/250 (60%), Positives = 189/250 (75%)

Query:    38 QESAEVALESRVTVQDNVKKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQ 97
             Q++ + ++ S  T        +K+F+IYRWNPD P+ +P +Q+Y VDL++CGPMVLDAL 
Sbjct:     9 QKAVQFSVRSLATAAAEKAPRLKKFQIYRWNPDTPEVQPKMQTYEVDLNKCGPMVLDALL 68

Query:    98 KIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIK 157
             KIK E D++L+ RRSCREGICGSCAMNIGG NT+ACL  ID D SK   + PLPHMFV++
Sbjct:    69 KIKNEQDATLTLRRSCREGICGSCAMNIGGRNTLACLCRIDQDESKDLKVYPLPHMFVVR 128

Query:   158 DLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPS 217
             DLV DLT+FY+QYKSIEP+L+    P DGRE  QS  DR KLDGLYECILCACC+TSCPS
Sbjct:   129 DLVPDLTHFYKQYKSIEPYLQRESNPADGRENLQSIEDRAKLDGLYECILCACCSTSCPS 188

Query:   218 YWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277
             YWWN ++YLGPA L+ AYRW+ DSRD+ T  R +A+ ++   LYRC  I NC  TCPKGL
Sbjct:   189 YWWNQQQYLGPAVLMQAYRWLIDSRDQATANR-KAMLQNSMSLYRCHTIMNCARTCPKGL 247

Query:   278 DPADAIHKMK 287
             +P  AI ++K
Sbjct:   248 NPGKAIAEIK 257

GO:0030445 "yeast-form cell wall" evidence=IDA

GO:0000104 "succinate dehydrogenase activity" evidence=NAS

GO:0005749 "mitochondrial respiratory chain complex II" evidence=IEA

GO:0009986 "cell surface" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0008177 "succinate dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|Q59QN7 SDH2 "Putative uncharacterized protein SDH2" [Candida albicans SC5314 (taxid:237561)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 151/250 (60%), Positives = 189/250 (75%)

Query:    38 QESAEVALESRVTVQDNVKKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQ 97
             Q++ + ++ S  T        +K+F+IYRWNPD P+ +P +Q+Y VDL++CGPMVLDAL 
Sbjct:     9 QKAVQFSVRSLATAAAEKAPRLKKFQIYRWNPDTPEVQPKMQTYEVDLNKCGPMVLDALL 68

Query:    98 KIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIK 157
             KIK E D++L+ RRSCREGICGSCAMNIGG NT+ACL  ID D SK   + PLPHMFV++
Sbjct:    69 KIKNEQDATLTLRRSCREGICGSCAMNIGGRNTLACLCRIDQDESKDLKVYPLPHMFVVR 128

Query:   158 DLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPS 217
             DLV DLT+FY+QYKSIEP+L+    P DGRE  QS  DR KLDGLYECILCACC+TSCPS
Sbjct:   129 DLVPDLTHFYKQYKSIEPYLQRESNPADGRENLQSIEDRAKLDGLYECILCACCSTSCPS 188

Query:   218 YWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL 277
             YWWN ++YLGPA L+ AYRW+ DSRD+ T  R +A+ ++   LYRC  I NC  TCPKGL
Sbjct:   189 YWWNQQQYLGPAVLMQAYRWLIDSRDQATANR-KAMLQNSMSLYRCHTIMNCARTCPKGL 247

Query:   278 DPADAIHKMK 287
             +P  AI ++K
Sbjct:   248 NPGKAIAEIK 257

GO:0000104 "succinate dehydrogenase activity" evidence=NAS

GO:0009986 "cell surface" evidence=IDA

GO:0030445 "yeast-form cell wall" evidence=IDA

POMBASE|SPAC140.01 sdh2 "succinate dehydrogenase (ubiquinone) iron-sulfur protein subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 151/229 (65%), Positives = 182/229 (79%)

Query:    59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
             +K F IYRWNP++P+ KP LQ Y VDL++CGPMVLDAL KIK E D +L++RRSCREGIC
Sbjct:    44 LKTFEIYRWNPEKPEVKPKLQKYTVDLTKCGPMVLDALIKIKNEQDPTLTFRRSCREGIC 103

Query:   119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
             GSCAMNI G+NT+AC+  I  D +KPT I PLPH F++KDLV DLT FY+QYKSIEPWL+
Sbjct:   104 GSCAMNINGSNTLACICNIKKD-NKPTKIYPLPHCFIVKDLVPDLTYFYKQYKSIEPWLQ 162

Query:   179 TNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWI 238
              + +PKD +E+ QS ADR KLDGLYECILCACC+TSCPSYWWN EEYLGPA L+ AYRWI
Sbjct:   163 NDNIPKD-KEFYQSRADRAKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLMQAYRWI 221

Query:   239 CDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
              DSRD+ T +RL  + ++   +YRC  I NC  TCPKGL+P  AI K+K
Sbjct:   222 IDSRDQATAKRLDVM-QNSMSVYRCHTIMNCARTCPKGLNPGLAIAKVK 269

GO:0005737 "cytoplasm" evidence=IDA

GO:0005749 "mitochondrial respiratory chain complex II" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

GO:0006105 "succinate metabolic process" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0008177 "succinate dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

FB|FBgn0014028 SdhB "Succinate dehydrogenase B" [Drosophila melanogaster (taxid:7227)]

 Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
 Identities = 154/261 (59%), Positives = 192/261 (73%)

Query:    45 LESRVTVQDNVKKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETD 104
             LE +   ++  +  +K+F IYRWNPD    KP++Q+Y VDL ECGPMVLDAL KIK E D
Sbjct:    32 LEQQAQPKEAQEPQIKKFEIYRWNPDNAGEKPYMQTYEVDLRECGPMVLDALIKIKNEMD 91

Query:   105 SSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLT 164
              +L++RRSCREGICGSCAMNIGGTNT+AC+  ID +TSK   + PLPHM+V++DLV D+ 
Sbjct:    92 PTLTFRRSCREGICGSCAMNIGGTNTLACISKIDINTSKSLKVYPLPHMYVVRDLVPDMN 151

Query:   165 NFYQQYKSIEPWL--KTNMVPKDGR-EYRQSPADRKKLDGLYECILCACCTTSCPSYWWN 221
             NFY+QY++I+PWL  K     K G+ +Y QS  DR KLDGLYECILCACC+TSCPSYWWN
Sbjct:   152 NFYEQYRNIQPWLQRKNEAGEKKGKAQYLQSVEDRSKLDGLYECILCACCSTSCPSYWWN 211

Query:   222 PEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPAD 281
              E+YLGPA L+ AYRWI DSRDE + ERL  L +D   +YRC  I NCT TCPKGL+P  
Sbjct:   212 AEKYLGPAVLMQAYRWIIDSRDENSAERLNKL-KDPFSVYRCHTIMNCTRTCPKGLNPGR 270

Query:   282 AIHKMKT--KHMLSQPMEMVE 300
             AI ++K     + S+P   +E
Sbjct:   271 AIAEIKKLLSGLASKPAPKLE 291

GO:0008177 "succinate dehydrogenase (ubiquinone) activity" evidence=ISS;NAS

GO:0005749 "mitochondrial respiratory chain complex II" evidence=ISS;NAS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS;NAS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P21801	DHSB_YEAST	1, ., 3, ., 5, ., 1	0.6724	0.7549	0.8571	yes	no
Q9CQA3	DHSB_MOUSE	1, ., 3, ., 5, ., 1	0.6521	0.7549	0.8085	yes	no
Q1RGP3	DHSB_RICBR	1, ., 3, ., 9, 9, ., 1	0.6419	0.7483	0.8659	yes	no
Q55CC2	DHSB_DICDI	1, ., 3, ., 5, ., 1	0.4964	0.8807	0.9268	yes	no
Q68XS0	DHSB_RICTY	1, ., 3, ., 9, 9, ., 1	0.6331	0.7483	0.8659	yes	no
A5PL98	DHSB_DANRE	1, ., 3, ., 5, ., 1	0.6478	0.7549	0.8142	yes	no
Q3T189	DHSB_BOVIN	1, ., 3, ., 5, ., 1	0.6521	0.7549	0.8142	yes	no
Q007T0	DHSB_PIG	1, ., 3, ., 5, ., 1	0.6391	0.7549	0.8142	yes	no
Q09545	DHSB_CAEEL	1, ., 3, ., 5, ., 1	0.5930	0.7582	0.7684	yes	no
Q59662	DHSB_PARDE	1, ., 3, ., 9, 9, ., 1	0.6118	0.7450	0.8687	yes	no
P21911	DHSB_SCHPO	1, ., 3, ., 5, ., 1	0.6593	0.7483	0.8218	yes	no
P21913	DHSB_RAT	1, ., 3, ., 5, ., 1	0.6565	0.7549	0.8085	yes	no
P21912	DHSB_HUMAN	1, ., 3, ., 5, ., 1	0.6434	0.7549	0.8142	yes	no
P21914	DHSB_DROME	1, ., 3, ., 5, ., 1	0.5984	0.8278	0.8417	yes	no
Q92JJ8	DHSB_RICCN	1, ., 3, ., 9, 9, ., 1	0.6506	0.7483	0.8659	yes	no
Q4UN71	DHSB_RICFE	1, ., 3, ., 9, 9, ., 1	0.6375	0.7483	0.8659	yes	no
Q75CI4	DHSB_ASHGO	1, ., 3, ., 5, ., 1	0.6535	0.7516	0.8697	yes	no
Q8ZQU2	DHSB_SALTY	1, ., 3, ., 9, 9, ., 1	0.5194	0.7450	0.9453	yes	no
B0BM36	DHSB_XENTR	1, ., 3, ., 5, ., 1	0.6521	0.7549	0.8028	yes	no
Q9FJP9	DHSB3_ARATH	1, ., 3, ., 5, ., 1	0.7689	0.9072	0.8867	yes	no
Q9ZEA1	DHSB_RICPR	1, ., 3, ., 9, 9, ., 1	0.6375	0.7483	0.8659	yes	no
Q9YHT2	DHSB_CHICK	1, ., 3, ., 5, ., 1	0.6739	0.7549	0.7862	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.5.1	0.979
3rd Layer	1.3.5	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	302
PLN00129	276	PLN00129, PLN00129, succinate dehydrogenase [ubiqu	1e-171
PRK05950	232	PRK05950, sdhB, succinate dehydrogenase iron-sulfu	1e-139
COG0479	234	COG0479, FrdB, Succinate dehydrogenase/fumarate re	1e-104
TIGR00384	220	TIGR00384, dhsB, succinate dehydrogenase and fumar	5e-99
PRK12575	235	PRK12575, PRK12575, succinate dehydrogenase iron-s	2e-88
PRK12577	329	PRK12577, PRK12577, succinate dehydrogenase iron-s	8e-59
PRK12576	279	PRK12576, PRK12576, succinate dehydrogenase iron-s	8e-56
PRK12385	244	PRK12385, PRK12385, fumarate reductase iron-sulfur	8e-50
pfam13085	107	pfam13085, Fer2_3, 2Fe-2S iron-sulfur cluster bind	4e-46
PRK06259	486	PRK06259, PRK06259, succinate dehydrogenase/fumara	8e-35
PRK13552	239	PRK13552, frdB, fumarate reductase iron-sulfur sub	1e-34
PRK08640	249	PRK08640, sdhB, succinate dehydrogenase iron-sulfu	1e-23
PRK12386	251	PRK12386, PRK12386, fumarate reductase iron-sulfur	9e-18
pfam13534	61	pfam13534, Fer4_17, 4Fe-4S dicluster domain	2e-07
PRK07570	250	PRK07570, PRK07570, succinate dehydrogenase/fumara	4e-07
COG0247	388	COG0247, GlpC, Fe-S oxidoreductase [Energy product	2e-05
COG1150	195	COG1150, HdrC, Heterodisulfide reductase, subunit	0.003
pfam13183	54	pfam13183, Fer4_8, 4Fe-4S dicluster domain	0.004

>gnl|CDD|215067 PLN00129, PLN00129, succinate dehydrogenase [ubiquinone] iron-sulfur subunit

 Score =  474 bits (1221), Expect = e-171
 Identities = 184/289 (63%), Positives = 212/289 (73%), Gaps = 18/289 (6%)

Query: 6   FLRRGYNKVAGIFGRAEAKKQDFPVLEGHPAAQESAEVALESRVTVQDNVKKVMKEFRIY 65
            LRR     AG+                 PAA  SA  + E++ + + +    +KEF+IY
Sbjct: 5   LLRRLAGAKAGLLA---------------PAAAASAAASAETKASSKGSKPSNLKEFQIY 49

Query: 66  RWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI 125
           RWNPD P  KP LQSY VDL++CGPMVLD L KIK E D SL++RRSCREGICGSCAMNI
Sbjct: 50  RWNPDNP-GKPHLQSYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNI 108

Query: 126 GGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKD 185
            G NT+ACL  ID D S PT ITPLPHMFVIKDLVVD+TNFYQQYKSIEPWLKT   P+D
Sbjct: 109 DGKNTLACLTKIDRDESGPTTITPLPHMFVIKDLVVDMTNFYQQYKSIEPWLKTKKPPED 168

Query: 186 GR-EYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDE 244
           G+ E+ QS  DR KLDG+YECILCACC+TSCPSYWWNPE++LGPAALLHAYRWI DSRDE
Sbjct: 169 GQKEHLQSKEDRAKLDGMYECILCACCSTSCPSYWWNPEKFLGPAALLHAYRWISDSRDE 228

Query: 245 LTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLS 293
            T+ERL+AL  DE KLYRC  I+NC+  CPKGL+PA AI K+K    L 
Sbjct: 229 YTKERLEALD-DEFKLYRCHTIRNCSNACPKGLNPAKAIAKIKQLLGLG 276

Length = 276

>gnl|CDD|235652 PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed

 Score =  391 bits (1008), Expect = e-139
 Identities = 137/227 (60%), Positives = 169/227 (74%), Gaps = 3/227 (1%)

Query: 61  EFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGS 120
            F+IYR+NPD  D+ P +Q+Y VD+ ECGPMVLDAL KIK E D +L++RRSCREG+CGS
Sbjct: 1   TFKIYRYNPDV-DANPRMQTYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGS 59

Query: 121 CAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTN 180
            AMNI G N +AC+ PI        +I PLP + VIKDLVVD+T FY QY+SI+P+L  +
Sbjct: 60  DAMNINGKNGLACITPISDLKKGKIVIRPLPGLPVIKDLVVDMTQFYAQYRSIKPYLIND 119

Query: 181 MVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICD 240
             P   RE  QSP DR+KLDGLYECILCACC+TSCPS+WWNP+++LGPAALL AYR+I D
Sbjct: 120 TPPPA-RERLQSPEDREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFIAD 178

Query: 241 SRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
           SRDE T ERL  L +D   ++RC  I NC   CPKGL+P  AI ++K
Sbjct: 179 SRDEATGERLDIL-DDPFGVFRCHTIMNCVEVCPKGLNPTKAIGEIK 224

Length = 232

>gnl|CDD|223555 COG0479, FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]

 Score =  304 bits (780), Expect = e-104
 Identities = 121/229 (52%), Positives = 153/229 (66%), Gaps = 6/229 (2%)

Query: 59  MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
             +F+IYR+NPD  D KP+ Q+Y V   + G  VLDAL  IK E D +LS+RRSCREGIC
Sbjct: 2   TLKFKIYRYNPD--DDKPYWQTYEVPY-DEGMTVLDALLYIKEEQDPTLSFRRSCREGIC 58

Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
           GSCAMNI G   +AC   +         I PLP+  VI+DLVVD+  FY++ + I+P+L 
Sbjct: 59  GSCAMNINGKPRLACKTLMKDLEEGVITIEPLPNFPVIRDLVVDMEEFYEKLRKIKPYLI 118

Query: 179 TNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWI 238
            +  P  G E  QSP +R+KLD L ECILC CCT +CPS WWNP ++LGPAAL  AYR++
Sbjct: 119 RDDEPDPG-ERLQSPEEREKLDELSECILCGCCTAACPSIWWNP-DFLGPAALRQAYRFL 176

Query: 239 CDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
            DSRDE T ERL+ L ED   ++RC    NCT  CPKG+ PA AI ++K
Sbjct: 177 ADSRDEGTAERLKIL-EDPDGVWRCTTCGNCTEVCPKGIPPAKAIAELK 224

Length = 234

>gnl|CDD|232950 TIGR00384, dhsB, succinate dehydrogenase and fumarate reductase iron-sulfur protein

 Score =  290 bits (743), Expect = 5e-99
 Identities = 113/224 (50%), Positives = 149/224 (66%), Gaps = 4/224 (1%)

Query: 64  IYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAM 123
           + R+NPD  D KP LQSY V   E    VLDAL  IK E D SL++RRSCR GICGSCAM
Sbjct: 1   VLRFNPDV-DEKPHLQSYEVPADEGM-TVLDALNYIKDEQDPSLAFRRSCRNGICGSCAM 58

Query: 124 NIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVP 183
           N+ G   +AC   ++        I PLP++ VIKDLVVD+  FY + ++I+P+L     P
Sbjct: 59  NVNGKPVLACKTKVEDLGQPVMKIEPLPNLPVIKDLVVDMGPFYAKLEAIKPYLIRKSQP 118

Query: 184 KDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRD 243
           +   E+ Q+P  R+KLD L  CILC CC +SCP++WWNP E+LGPAAL  AYR++ DSRD
Sbjct: 119 EPEGEFLQTPEQREKLDQLSGCILCGCCYSSCPAFWWNP-EFLGPAALTAAYRFLIDSRD 177

Query: 244 ELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
             T++RL+ L  D+  ++RC    NC+  CPKG++PA AI K+K
Sbjct: 178 HATKDRLEGLN-DKNGVWRCTTCMNCSEVCPKGVNPARAIEKLK 220

Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase [Energy metabolism, Aerobic, Energy metabolism, Anaerobic, Energy metabolism, TCA cycle]. Length = 220

>gnl|CDD|171592 PRK12575, PRK12575, succinate dehydrogenase iron-sulfur subunit; Provisional

 Score =  263 bits (673), Expect = 2e-88
 Identities = 120/225 (53%), Positives = 163/225 (72%), Gaps = 5/225 (2%)

Query: 64  IYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAM 123
           IYR++PD  D+ P +Q Y +       M+LD L ++KA+ D +LSYRRSCREGICGS AM
Sbjct: 9   IYRYDPDD-DAAPRMQRYEIAPRAEDRMLLDVLGRVKAQ-DETLSYRRSCREGICGSDAM 66

Query: 124 NIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVP 183
           NI G N +ACL  +     +  ++ PLP + V++DL+VD+T+F+ QY SI P+L  + VP
Sbjct: 67  NINGRNGLACLTNMQ-ALPREIVLRPLPGLPVVRDLIVDMTDFFNQYHSIRPYLINDTVP 125

Query: 184 KDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRD 243
            + RE  Q+P +R++LDGLYECILCACC+T+CPSYWWNP++++GPA LL AYR+I DSRD
Sbjct: 126 PE-RERLQTPQEREQLDGLYECILCACCSTACPSYWWNPDKFVGPAGLLQAYRFIADSRD 184

Query: 244 ELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKT 288
           + T  RL  L ED  +L+RCR I NC   CPKGL+PA AI +++T
Sbjct: 185 DATAARLDDL-EDPYRLFRCRTIMNCVDVCPKGLNPARAIGQIRT 228

Length = 235

>gnl|CDD|183605 PRK12577, PRK12577, succinate dehydrogenase iron-sulfur subunit; Provisional

 Score =  190 bits (485), Expect = 8e-59
 Identities = 91/239 (38%), Positives = 141/239 (58%), Gaps = 19/239 (7%)

Query: 61  EFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGS 120
            F+I R    + +S P++Q+Y +++   G  +LD L +IK E D SL++R++CR  ICGS
Sbjct: 4   LFKILR---QKQNSAPYVQTYTLEVEP-GNTILDCLNRIKWEQDGSLAFRKNCRNTICGS 59

Query: 121 CAMNIGGTNTVACLKPIDGDTSK---------PTI-ITPLPHMFVIKDLVVDLTNFYQQY 170
           CAM I G + +AC + +  + ++         P I I PL +M VIKDLVVD+++F+Q  
Sbjct: 60  CAMRINGRSALACKENVGSELARLSDSNSGAIPEITIAPLGNMPVIKDLVVDMSSFWQNL 119

Query: 171 KSIEPWLKT--NMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGP 228
           ++++P++ T    VP+  RE+ Q+P +R KLD    CILC  C + C +   NP E++GP
Sbjct: 120 EAVDPYVSTAARQVPE--REFLQTPEERSKLDQTGNCILCGACYSECNAREVNP-EFVGP 176

Query: 229 AALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
            AL  A R + DSRD  TE+RL+   +    ++ C     C + CP  + P D I K+K
Sbjct: 177 HALAKAQRMVADSRDTATEQRLELYNQGTAGVWGCTRCYYCNSVCPMEVAPLDQITKIK 235

Length = 329

>gnl|CDD|237143 PRK12576, PRK12576, succinate dehydrogenase iron-sulfur subunit; Provisional

 Score =  181 bits (461), Expect = 8e-56
 Identities = 85/243 (34%), Positives = 134/243 (55%), Gaps = 14/243 (5%)

Query: 62  FRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSC 121
           F++ R++P++     + Q Y V +      V +AL++IK E D +LSYR SC   +CGSC
Sbjct: 11  FKVKRYDPEK---GSWWQEYKVKVDR-FTQVTEALRRIKEEQDPTLSYRASCHMAVCGSC 66

Query: 122 AMNIGGTNTVACLKPIDGDTSK---PTI-ITPLPHMFVIKDLVVDLTNFYQQYKSIEPWL 177
            M I G   +AC K +  D +K     I I P+ +  V+KDL+VD   FY++   ++P L
Sbjct: 67  GMKINGEPRLAC-KTLVLDVAKKYNSVITIEPMDYFKVVKDLIVDFDEFYERMFKVKPRL 125

Query: 178 -KTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYR 236
            +   V +   E+R  P D+K+L    +CI C  C ++CP    +P E+LGPAA    YR
Sbjct: 126 YRAKEVLEGKAEHRLKPEDQKELWKFAQCIWCGLCVSACPVVAIDP-EFLGPAAHAKGYR 184

Query: 237 WICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQPM 296
           ++ D RD +TEER++ L       +RC    +C+  CP+ ++P  AI K ++   + +P 
Sbjct: 185 FLADPRDTITEERMKIL---IDSSWRCTYCYSCSNVCPRDIEPVTAIKKTRSFTRVYKPK 241

Query: 297 EMV 299
             V
Sbjct: 242 SEV 244

Length = 279

>gnl|CDD|183490 PRK12385, PRK12385, fumarate reductase iron-sulfur subunit; Provisional

 Score =  164 bits (418), Expect = 8e-50
 Identities = 84/233 (36%), Positives = 126/233 (54%), Gaps = 8/233 (3%)

Query: 57  KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREG 116
           K +K   + R+NP+  D++P  Q+Y V   E    +LDAL  IK      LSYR SCR  
Sbjct: 5   KNLK-IEVLRYNPEV-DTEPHSQTYEVPYDE-TTSLLDALGYIKDNLAPDLSYRWSCRMA 61

Query: 117 ICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPW 176
           ICGSC M +     +AC K    D +    +  L +  + +DLVVD+T+F +  ++I+P+
Sbjct: 62  ICGSCGMMVNNVPKLAC-KTFLRDYTGGMKVEALANFPIERDLVVDMTHFIESLEAIKPY 120

Query: 177 -LKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAY 235
            +  +  P DG   +Q+PA   K      CI C  C  +CP +  NP E++GPAA+  A+
Sbjct: 121 IIGNDRTPDDG-PNKQTPAQMAKYHQFSGCINCGLCYAACPQFGLNP-EFIGPAAITLAH 178

Query: 236 RWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKT 288
           R+  DSRD   +ER++ L      ++ C  +  C+  CPK +DPA AI + K 
Sbjct: 179 RYNLDSRDHGKKERMKQLNGQN-GVWSCTFVGYCSEVCPKHVDPAAAIQQGKV 230

Length = 244

>gnl|CDD|221911 pfam13085, Fer2_3, 2Fe-2S iron-sulfur cluster binding domain

 Score =  150 bits (382), Expect = 4e-46
 Identities = 53/108 (49%), Positives = 69/108 (63%), Gaps = 3/108 (2%)

Query: 62  FRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSC 121
            RI+R++P R D++P+ Q Y V+  E G  VLDAL  IK E D +L++R SCREG+CGSC
Sbjct: 2   LRIFRYDPPR-DAEPYYQEYEVEY-EEGMTVLDALNYIKEEQDPTLAFRASCREGVCGSC 59

Query: 122 AMNIGGTNTVACLKPIDGDTSKPTI-ITPLPHMFVIKDLVVDLTNFYQ 168
           AM I G   +AC   ID       I I PLP   VI+DLVVD + F++
Sbjct: 60  AMRINGKPRLACKTLIDDLLKGEEITIEPLPGFPVIRDLVVDRSPFFE 107

The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which abeta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. Length = 107

>gnl|CDD|235756 PRK06259, PRK06259, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional

 Score =  131 bits (331), Expect = 8e-35
 Identities = 81/231 (35%), Positives = 113/231 (48%), Gaps = 21/231 (9%)

Query: 59  MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
           MK   I     D    +P  +SY V + E G  VLDAL+ I    D+++++R SCR G C
Sbjct: 1   MKMITITVKRFDPEKDEPHFESYEVPVKE-GMTVLDALEYINKTYDANIAFRSSCRAGQC 59

Query: 119 GSCAMNIGGTNTVACLKPI-DGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWL 177
           GSCA+ I G   +AC   + DG      II PL    VIKDL+VD   +Y++ KS+  +L
Sbjct: 60  GSCAVTINGEPVLACKTEVEDGM-----IIEPL-DFPVIKDLIVDREPYYKKLKSLRNYL 113

Query: 178 KTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRW 237
           +         E    P D + +  L  CI C  C ++CP+      +Y GP  +    R+
Sbjct: 114 QRKN------EKITYPEDIEDIKKLRGCIECLSCVSTCPAR--KVSDYPGPTFMRQLARF 165

Query: 238 ICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD-PADAIHKMK 287
             D RDE   E+ +A  E    LY C     C   CPK +D P  AI K++
Sbjct: 166 AFDPRDEGDREK-EAFDEG---LYNCTTCGKCVEVCPKEIDIPGKAIEKLR 212

Length = 486

>gnl|CDD|184136 PRK13552, frdB, fumarate reductase iron-sulfur subunit; Provisional

 Score =  125 bits (317), Expect = 1e-34
 Identities = 74/232 (31%), Positives = 117/232 (50%), Gaps = 6/232 (2%)

Query: 61  EFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGS 120
            F I+R+NP  P SKP + +Y ++ +  G  +  AL +I+ E D SL +   CR GICGS
Sbjct: 6   TFNIFRYNPQDPGSKPHMVTYQLEETP-GMTLFIALNRIREEQDPSLQFDFVCRAGICGS 64

Query: 121 CAMNIGGTNTVACLKPIDGDTSKPTI-ITPLPHMFVIKDLVVDLTNFYQQ-YKSIEPWLK 178
           CAM I G  T+AC + +  D     I + PLP   +I DL V+   ++++  + +E W+ 
Sbjct: 65  CAMVINGRPTLAC-RTLTSDYPDGVITLMPLPVFKLIGDLSVNTGKWFREMSERVESWIH 123

Query: 179 TNMVPKDGR-EYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRW 237
           T+      R E R  P +  ++  L  CI C CC  +C +      +++G   L    R+
Sbjct: 124 TDKEFDIHRLEERMEPEEADEIYELDRCIECGCCVAACGTKQMRE-DFVGAVGLNRIARF 182

Query: 238 ICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTK 289
             D RDE T+E    L  ++  ++ C ++  C   CPK L     I  ++ K
Sbjct: 183 ELDPRDERTDEDFYELIGNDDGVFGCMSLLGCEDNCPKDLPLQQQIAYLRRK 234

Length = 239

>gnl|CDD|181515 PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed

 Score = 96.6 bits (241), Expect = 1e-23
 Identities = 73/256 (28%), Positives = 114/256 (44%), Gaps = 39/256 (15%)

Query: 59  MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKI-------KAETDSSLSYRR 111
                I R   D PDSKP+ + + +        V+ AL +I       K E  + + +  
Sbjct: 5   TVRLIIKRQ--DGPDSKPYWEEFEIPYRP-NMNVISALMEIRRNPVNAKGEKTTPVVWDM 61

Query: 112 SCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYK 171
           +C E +CG+C+M I G    AC   ID    +P  + P+    V++DL VD +  +   K
Sbjct: 62  NCLEEVCGACSMVINGKPRQACTALID-QLEQPIRLEPMSTFPVVRDLQVDRSRMFDNLK 120

Query: 172 SIEPWLKTNMVPKDGREY------RQSPADRKKLDGLYECILCACCTTSCPSYWWNPE-E 224
            ++ W     +P DG  Y      R     R+    L +C+ C CC  +CP+   N + +
Sbjct: 121 RVKAW-----IPIDG-TYDLGPGPRMPEEKRQWAYELSKCMTCGCCLEACPNV--NEKSD 172

Query: 225 YLGPAA-----LLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDP 279
           ++GPAA     L +A+     + +   EERL+AL  D   +  C   +NC   CPKG+  
Sbjct: 173 FIGPAAISQVRLFNAH----PTGEMHKEERLRALMGD-GGIADCGNAQNCVRVCPKGIPL 227

Query: 280 ADAIHKMK---TKHML 292
             +I  M    TK   
Sbjct: 228 TTSIAAMNRETTKQSF 243

Length = 249

>gnl|CDD|237086 PRK12386, PRK12386, fumarate reductase iron-sulfur subunit; Provisional

 Score = 80.5 bits (199), Expect = 9e-18
 Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 33/240 (13%)

Query: 62  FRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSC 121
           FR++R +    +    LQ Y V+++E G +VLD + +++A     L+ R +C+ G CGSC
Sbjct: 7   FRVWRGDASGGE----LQDYTVEVNE-GEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSC 61

Query: 122 AMNIGGTNTVACLKPIDG-DTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTN 180
           +  I G   + C+  +   D  +   +TP+    VI+DLV D++  Y++ + I  +    
Sbjct: 62  SAEINGRPRLMCMTRMSTFDEDETVTVTPMRTFPVIRDLVTDVSFNYEKAREIPSFTP-- 119

Query: 181 MVPKDGR--EYRQSPADRKKLDGLYECILCACCTTSC---PSYWWNPEEYLGP------A 229
             PKD +  EYR    D ++     +CI C  C   C     +  N   + GP      A
Sbjct: 120 --PKDLQPGEYRMQQVDVERSQEFRKCIECFLCQNVCHVVRDHEENKPAFAGPRFLMRIA 177

Query: 230 AL-LHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPAD-AIHKMK 287
            L +H      D+ D   E +      +E  L  C   K CT  CP+ +   D A+  MK
Sbjct: 178 ELEMHPL----DTADRRAEAQ------EEHGLGYCNITKCCTEVCPEHIKITDNALIPMK 227

Length = 251

>gnl|CDD|222205 pfam13534, Fer4_17, 4Fe-4S dicluster domain

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 21/75 (28%), Positives = 23/75 (30%), Gaps = 14/75 (18%)

Query: 204 ECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRC 263
            CI C  C   CPSY  N +E   P  L           +EL                 C
Sbjct: 1   RCIQCGYCVPVCPSYLLNGDE---PKKL--MRAAYNGDLEELLA---------NEAADSC 46

Query: 264 RAIKNCTATCPKGLD 278
                C   CP GLD
Sbjct: 47  SECGLCEYVCPMGLD 61

This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich. Length = 61

>gnl|CDD|181038 PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 71/254 (27%), Positives = 98/254 (38%), Gaps = 59/254 (23%)

Query: 67  WNPDRPDSKPFLQSYHV-DLSECGPM----VLDAL-QKIKAETDSSLSYRRSCREGICGS 120
           W    PD K   ++Y V D+S    M    +LD L +++  + +  +++   CREGICG 
Sbjct: 8   WRQKGPDDKGKFETYEVDDISP--DMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGM 65

Query: 121 CAMNIGG------TNTVAC------LKPIDGDTSKPTIITP-----LPHMFVIKDLVVDL 163
           C + I G        T  C       K  DGDT     I P      P   VIKDLVVD 
Sbjct: 66  CGLVINGRPHGPDRGTTTCQLHMRSFK--DGDTIT---IEPWRAAAFP---VIKDLVVDR 117

Query: 164 TNF---YQQ--YKSIE----PWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTS 214
           +      Q   Y S+     P      VPK+  +     A          CI C  C  +
Sbjct: 118 SALDRIIQAGGYVSVNTGGAPDANAIPVPKEDADRAFDAA---------ACIGCGACVAA 168

Query: 215 CPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTE--DERKLYRCRAIKNCTAT 272
           CP    N    L   A +     +   + E    R++A+    DE     C     C A 
Sbjct: 169 CP----NGSAMLFTGAKVSHLALLPQGQPE-RARRVRAMVAQMDEEGFGNCTNTGECEAV 223

Query: 273 CPKGLDPADAIHKM 286
           CPKG+   + I +M
Sbjct: 224 CPKGI-SLENIARM 236

Length = 250

>gnl|CDD|223325 COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDER 258
            + L +C+ C  CT  CPSY          A    + R       E+   +     E   
Sbjct: 5   FESLDKCVHCGFCTNVCPSY---------RATEALSPRGRIVLVREVLRGKAPGDEEVYE 55

Query: 259 KLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQPMEMV 299
            L  C A   C   CP G+D  D I + + K      ++ +
Sbjct: 56  ALDTCLACGACATACPSGIDIGDLIREARRKLAKGLLLDGL 96

Length = 388

>gnl|CDD|224072 COG1150, HdrC, Heterodisulfide reductase, subunit C [Energy production and conversion]

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 23/104 (22%)

Query: 199 LDGLYECILCACCTTSCPS---YWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTE 255
           LD L  C  C  CT SCPS     ++P + +                 +     +  +  
Sbjct: 35  LDYLEGCYQCGTCTGSCPSGRFTDYSPRKII----------------RKARLGLVDLILS 78

Query: 256 DERKLYRCRAIKNCTATCPKGLDPAD---AIHKMKTKHMLSQPM 296
            E  L+ C     CT  CP+G+   +   A+  +  K  L +PM
Sbjct: 79  SE-SLWACVTCYTCTERCPRGVKIVEVVKALRNIAVKEGLIEPM 121

Length = 195

>gnl|CDD|221963 pfam13183, Fer4_8, 4Fe-4S dicluster domain

 Score = 34.5 bits (79), Expect = 0.004
 Identities = 16/77 (20%), Positives = 21/77 (27%), Gaps = 23/77 (29%)

Query: 201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKL 260
            L +CI C  C   CP Y                       R                +L
Sbjct: 1   ELSKCIRCGACRAVCPVY-----------------------RALGRFSGDPRGGALAAEL 37

Query: 261 YRCRAIKNCTATCPKGL 277
           + C +   CT  CP G+
Sbjct: 38  WSCTSCGACTEVCPVGI 54

Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
COG0479	234	FrdB Succinate dehydrogenase/fumarate reductase, F	100.0
PLN00129	276	succinate dehydrogenase [ubiquinone] iron-sulfur s	100.0
KOG3049	288	consensus Succinate dehydrogenase, Fe-S protein su	100.0
PRK13552	239	frdB fumarate reductase iron-sulfur subunit; Provi	100.0
PRK12575	235	succinate dehydrogenase iron-sulfur subunit; Provi	100.0
PRK08640	249	sdhB succinate dehydrogenase iron-sulfur subunit;	100.0
PRK12386	251	fumarate reductase iron-sulfur subunit; Provisiona	100.0
PRK12385	244	fumarate reductase iron-sulfur subunit; Provisiona	100.0
PRK12577	329	succinate dehydrogenase iron-sulfur subunit; Provi	100.0
PRK05950	232	sdhB succinate dehydrogenase iron-sulfur subunit;	100.0
PRK12576	279	succinate dehydrogenase iron-sulfur subunit; Provi	100.0
TIGR00384	220	dhsB succinate dehydrogenase and fumarate reductas	100.0
PRK07570	250	succinate dehydrogenase/fumarate reductase iron-su	100.0
PRK06259	486	succinate dehydrogenase/fumarate reductase iron-su	100.0
PF13085	110	Fer2_3: 2Fe-2S iron-sulfur cluster binding domain;	100.0
COG3383	978	Uncharacterized anaerobic dehydrogenase [General f	99.88
PRK08493	819	NADH dehydrogenase subunit G; Validated	99.86
PTZ00305	297	NADH:ubiquinone oxidoreductase; Provisional	99.83
COG1034	693	NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreduc	99.8
PRK09130	687	NADH dehydrogenase subunit G; Validated	99.78
PRK07569	234	bidirectional hydrogenase complex protein HoxU; Va	99.77
PRK07860	797	NADH dehydrogenase subunit G; Validated	99.76
PRK09129	776	NADH dehydrogenase subunit G; Validated	99.75
TIGR01973	603	NuoG NADH-quinone oxidoreductase, chain G. This mo	99.75
PRK08166	847	NADH dehydrogenase subunit G; Validated	99.67
PRK11274	407	glcF glycolate oxidase iron-sulfur subunit; Provis	99.39
COG1150	195	HdrC Heterodisulfide reductase, subunit C [Energy	99.34
PF13510	82	Fer2_4: 2Fe-2S iron-sulfur cluster binding domain;	99.29
TIGR03290	144	CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, s	99.28
COG1139	459	Uncharacterized conserved protein containing a fer	99.26
TIGR03193	148	4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamm	99.24
PRK09908	159	xanthine dehydrogenase subunit XdhC; Provisional	99.21
TIGR00273	432	iron-sulfur cluster-binding protein. Members of th	99.17
COG2080	156	CoxS Aerobic-type carbon monoxide dehydrogenase, s	99.16
PRK11168	396	glpC sn-glycerol-3-phosphate dehydrogenase subunit	99.13
PRK11433	217	aldehyde oxidoreductase 2Fe-2S subunit; Provisiona	99.11
TIGR03198	151	pucE xanthine dehydrogenase E subunit. This gene h	99.05
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.04
TIGR03379	397	glycerol3P_GlpC glycerol-3-phosphate dehydrogenase	98.94
COG0247	388	GlpC Fe-S oxidoreductase [Energy production and co	98.89
PF13183	57	Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_	98.87
PF13534	61	Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9	98.79
PRK15055	344	anaerobic sulfite reductase subunit A; Provisional	98.77
PRK09800	956	putative hypoxanthine oxidase; Provisional	98.65
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	98.6
TIGR02963	467	xanthine_xdhA xanthine dehydrogenase, small subuni	98.54
TIGR03313	951	Se_sel_red_Mo probable selenate reductase, molybde	98.49
TIGR03311	848	Se_dep_Molyb_1 selenium-dependent molybdenum hydro	98.48
TIGR02910	334	sulfite_red_A sulfite reductase, subunit A. Member	98.44
PRK00941	781	acetyl-CoA decarbonylase/synthase complex subunit	98.43
cd00207	84	fer2 2Fe-2S iron-sulfur cluster binding domain. Ir	98.42
PRK05035	695	electron transport complex protein RnfC; Provision	98.41
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	98.38
cd01916	731	ACS_1 Acetyl-CoA synthase (ACS), also known as ace	98.38
KOG2282	708	consensus NADH-ubiquinone oxidoreductase, NDUFS1/7	98.37
COG1143	172	NuoI Formate hydrogenlyase subunit 6/NADH:ubiquino	98.35
TIGR00314	784	cdhA CO dehydrogenase/acetyl-CoA synthase complex,	98.34
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	98.32
CHL00134	99	petF ferredoxin; Validated	98.19
PLN00192	1344	aldehyde oxidase	98.17
PF00111	78	Fer2: 2Fe-2S iron-sulfur cluster binding domain; I	98.17
COG4656	529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	98.17
PRK10713	84	2Fe-2S ferredoxin YfaE; Provisional	98.16
TIGR02969	1330	mam_aldehyde_ox aldehyde oxidase. Members of this	98.12
PF13237	52	Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.	98.11
TIGR02484	372	CitB CitB domain protein. CobZ is essential for co	98.1
TIGR02007	110	fdx_isc ferredoxin, 2Fe-2S type, ISC system. This	98.1
PF13187	55	Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_	98.07
PF13746	69	Fer4_18: 4Fe-4S dicluster domain	98.07
TIGR02008	97	fdx_plant ferredoxin [2Fe-2S]. This model represen	98.05
PF12838	52	Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014	98.03
PF14697	59	Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE	98.01
TIGR00403	183	ndhI NADH-plastoquinone oxidoreductase subunit I p	97.98
KOG3256	212	consensus NADH:ubiquinone oxidoreductase, NDUFS8/2	97.9
PRK15033	389	tricarballylate utilization protein B; Provisional	97.83
COG1152	772	CdhA CO dehydrogenase/acetyl-CoA synthase alpha su	97.72
PRK13984	604	putative oxidoreductase; Provisional	97.7
PLN03136	148	Ferredoxin; Provisional	97.63
PLN02593	117	adrenodoxin-like ferredoxin protein	97.63
PTZ00038	191	ferredoxin; Provisional	97.61
COG1453	391	Predicted oxidoreductases of the aldo/keto reducta	97.6
PRK05888	164	NADH dehydrogenase subunit I; Provisional	97.58
PTZ00490	143	Ferredoxin superfamily; Provisional	97.52
COG0633	102	Fdx Ferredoxin [Energy production and conversion]	97.52
CHL00014	167	ndhI NADH dehydrogenase subunit I	97.48
PLN02906	1319	xanthine dehydrogenase	97.43
PRK05113	191	electron transport complex protein RnfB; Provision	97.42
TIGR01971	122	NuoI NADH-quinone oxidoreductase, chain I. This mo	97.41
PRK14028	312	pyruvate ferredoxin oxidoreductase subunit gamma/d	97.39
PRK02651	81	photosystem I subunit VII; Provisional	97.38
CHL00065	81	psaC photosystem I subunit VII	97.38
PRK08348	120	NADH-plastoquinone oxidoreductase subunit; Provisi	97.37
PRK08222	181	hydrogenase 4 subunit H; Validated	97.36
PRK05713	312	hypothetical protein; Provisional	97.34
TIGR02936	91	fdxN_nitrog ferredoxin III, nif-specific. Members	97.34
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	97.31
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	97.3
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	97.29
PRK09626	103	oorD 2-oxoglutarate-acceptor oxidoreductase subuni	97.26
PRK06273	165	ferredoxin; Provisional	97.26
TIGR03048	80	PS_I_psaC photosystem I iron-sulfur protein PsaC.	97.26
COG1145	99	NapF Ferredoxin [Energy production and conversion]	97.25
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	97.23
TIGR02176	1165	pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid	97.2
PRK09625	133	porD pyruvate flavodoxin oxidoreductase subunit de	97.2
TIGR02512	374	Fe_only_hydrog hydrogenases, Fe-only. This model d	97.2
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	97.18
PLN00071	81	photosystem I subunit VII; Provisional	97.15
PRK12387	180	formate hydrogenlyase complex iron-sulfur subunit;	97.13
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	97.13
TIGR02494	295	PFLE_PFLC glycyl-radical enzyme activating protein	97.12
PRK06991	270	ferredoxin; Provisional	97.06
TIGR02163	255	napH_ ferredoxin-type protein, NapH/MauN family. M	97.05
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	97.05
PF13484	67	Fer4_16: 4Fe-4S double cluster binding domain	97.04
PRK09624	105	porD pyuvate ferredoxin oxidoreductase subunit del	97.02
PRK08764	135	ferredoxin; Provisional	96.97
PRK09477	271	napH quinol dehydrogenase membrane component; Prov	96.96
PRK09623	105	vorD 2-ketoisovalerate ferredoxin oxidoreductase s	96.92
PF12798	15	Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450	96.9
COG0437	203	HybA Fe-S-cluster-containing hydrogenase component	96.89
TIGR01944	165	rnfB electron transport complex, RnfABCDGE type, B	96.89
COG1146	68	Ferredoxin [Energy production and conversion]	96.85
TIGR02179	78	PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta	96.81
TIGR00402	101	napF ferredoxin-type protein NapF. The gene codes	96.78
PF12797	22	Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450	96.75
TIGR02912	314	sulfite_red_C sulfite reductase, subunit C. Member	96.74
COG4630	493	XdhA Xanthine dehydrogenase, iron-sulfur cluster a	96.73
PRK10194	163	ferredoxin-type protein; Provisional	96.69
PRK09326	341	F420H2 dehydrogenase subunit F; Provisional	96.57
PRK10882	328	hydrogenase 2 protein HybA; Provisional	96.5
COG1149	284	MinD superfamily P-loop ATPase containing an inser	96.47
PRK09898	208	hypothetical protein; Provisional	96.42
TIGR03149	225	cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S	96.25
KOG0430	1257	consensus Xanthine dehydrogenase [Nucleotide trans	96.1
PF12800	17	Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450	96.02
PF12837	24	Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450	95.99
TIGR03224	411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	95.97
TIGR02060	132	aprB adenosine phosphosulphate reductase, beta sub	95.94
PF12837	24	Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450	95.92
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	95.89
PF00037	24	Fer4: 4Fe-4S binding domain; InterPro: IPR001450 T	95.87
TIGR02700	234	flavo_MJ0208 archaeoflavoprotein, MJ0208 family. T	95.86
PF12800	17	Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450	95.76
COG1144	91	Pyruvate:ferredoxin oxidoreductase and related 2-o	95.7
TIGR00397	213	mauM_napG MauM/NapG family ferredoxin-type protein	95.69
TIGR02745	434	ccoG_rdxA_fixG cytochrome c oxidase accessory prot	95.62
COG2768	354	Uncharacterized Fe-S center protein [General funct	95.56
TIGR03478	321	DMSO_red_II_bet DMSO reductase family type II enzy	95.53
TIGR00276	282	iron-sulfur cluster binding protein, putative. Thi	95.51
TIGR01660	492	narH nitrate reductase, beta subunit. The Nitrate	95.49
TIGR03336	595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	95.37
TIGR03287	391	methan_mark_16 putative methanogenesis marker 16 m	95.34
PRK10194	163	ferredoxin-type protein; Provisional	95.31
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	95.26
PRK09476	254	napG quinol dehydrogenase periplasmic component; P	95.24
TIGR01582	283	FDH-beta formate dehydrogenase, beta subunit, Fe-S	95.22
TIGR03149	225	cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S	95.13
TIGR03478	321	DMSO_red_II_bet DMSO reductase family type II enzy	95.11
COG2878	198	Predicted NADH:ubiquinone oxidoreductase, subunit	95.1
PF00037	24	Fer4: 4Fe-4S binding domain; InterPro: IPR001450 T	95.09
PRK14993	244	tetrathionate reductase subunit B; Provisional	95.08
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	95.07
PF13247	98	Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX	95.0
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	94.92
PRK13795	636	hypothetical protein; Provisional	94.92
TIGR02951	161	DMSO_dmsB DMSO reductase, iron-sulfur subunit. Thi	94.87
PRK10882	328	hydrogenase 2 protein HybA; Provisional	94.83
PRK10330	181	formate dehydrogenase-H ferredoxin subunit; Provis	94.82
PRK13984	604	putative oxidoreductase; Provisional	94.79
PF12798	15	Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450	94.76
PRK07118	280	ferredoxin; Validated	94.73
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.64
TIGR00397	213	mauM_napG MauM/NapG family ferredoxin-type protein	94.61
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	94.58
PRK09476	254	napG quinol dehydrogenase periplasmic component; P	94.51
TIGR01660	492	narH nitrate reductase, beta subunit. The Nitrate	94.49
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	94.45
TIGR01582	283	FDH-beta formate dehydrogenase, beta subunit, Fe-S	94.39
TIGR03294	228	FrhG coenzyme F420 hydrogenase, subunit gamma. Thi	94.33
PRK07118	280	ferredoxin; Validated	94.28
PRK09898	208	hypothetical protein; Provisional	94.27
TIGR02486	314	RDH reductive dehalogenase. This model represents	94.24
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	94.24
COG4231	640	Indolepyruvate ferredoxin oxidoreductase, alpha an	94.12
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.08
PRK10330	181	formate dehydrogenase-H ferredoxin subunit; Provis	94.01
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	93.9
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	93.79
PF12797	22	Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450	93.71
PRK08364	70	sulfur carrier protein ThiS; Provisional	93.53
COG1142	165	HycB Fe-S-cluster-containing hydrogenase component	93.41
cd07030	259	RNAP_D D subunit of Archaeal RNA polymerase. The D	93.11
TIGR02951	161	DMSO_dmsB DMSO reductase, iron-sulfur subunit. Thi	93.03
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	92.98
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	92.85
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	92.81
PRK14993	244	tetrathionate reductase subunit B; Provisional	92.69
PF13746	69	Fer4_18: 4Fe-4S dicluster domain	92.64
PRK00783	263	DNA-directed RNA polymerase subunit D; Provisional	92.44
COG2221	317	DsrA Dissimilatory sulfite reductase (desulfovirid	92.34
PF13187	55	Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_	92.27
COG3894	614	Uncharacterized metal-binding protein [General fun	91.61
TIGR02066	341	dsrB sulfite reductase, dissimilatory-type beta su	91.57
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	91.36
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	90.96
PRK12387	180	formate hydrogenlyase complex iron-sulfur subunit;	90.9
PF13237	52	Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.	90.36
PF14697	59	Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE	90.2
PF13247	98	Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX	90.17
COG1143	172	NuoI Formate hydrogenlyase subunit 6/NADH:ubiquino	89.97
PF13534	61	Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9	89.81
PF13484	67	Fer4_16: 4Fe-4S double cluster binding domain	89.79
COG0437	203	HybA Fe-S-cluster-containing hydrogenase component	89.51
COG1600	337	Uncharacterized Fe-S protein [Energy production an	89.4
KOG3256	212	consensus NADH:ubiquinone oxidoreductase, NDUFS8/2	89.27
PRK15449	95	ferredoxin-like protein FixX; Provisional	88.91
PF12838	52	Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014	88.44
TIGR02745	434	ccoG_rdxA_fixG cytochrome c oxidase accessory prot	88.39
COG0479	234	FrdB Succinate dehydrogenase/fumarate reductase, F	88.05
PRK01777	95	hypothetical protein; Validated	88.04
cd06192	243	DHOD_e_trans_like FAD/NAD binding domain (electron	88.0
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	87.63
PRK05659	66	sulfur carrier protein ThiS; Validated	87.5
COG1150	195	HdrC Heterodisulfide reductase, subunit C [Energy	87.36
PRK05802	320	hypothetical protein; Provisional	86.9
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	86.21
PF13183	57	Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_	85.86
PRK06222	281	ferredoxin-NADP(+) reductase subunit alpha; Review	85.64
cd06220	233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	85.63
COG1145	99	NapF Ferredoxin [Energy production and conversion]	85.58
PRK12814	652	putative NADPH-dependent glutamate synthase small	85.13
PF10418	40	DHODB_Fe-S_bind: Iron-sulfur cluster binding domai	84.77
PLN00071	81	photosystem I subunit VII; Provisional	84.65
TIGR02163	255	napH_ ferredoxin-type protein, NapH/MauN family. M	84.41
PRK05035	695	electron transport complex protein RnfC; Provision	84.25
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	83.82
PRK09626	103	oorD 2-oxoglutarate-acceptor oxidoreductase subuni	83.66
COG1941	247	FrhG Coenzyme F420-reducing hydrogenase, gamma sub	83.54
PRK08222	181	hydrogenase 4 subunit H; Validated	83.39
TIGR03048	80	PS_I_psaC photosystem I iron-sulfur protein PsaC.	82.6
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	82.49
PRK02651	81	photosystem I subunit VII; Provisional	82.24
TIGR02936	91	fdxN_nitrog ferredoxin III, nif-specific. Members	82.22
PRK08348	120	NADH-plastoquinone oxidoreductase subunit; Provisi	82.21
COG1152	772	CdhA CO dehydrogenase/acetyl-CoA synthase alpha su	81.86
CHL00065	81	psaC photosystem I subunit VII	81.84
PF14691	111	Fer4_20: Dihydroprymidine dehydrogenase domain II,	81.69
PRK05888	164	NADH dehydrogenase subunit I; Provisional	81.68
COG1142	165	HycB Fe-S-cluster-containing hydrogenase component	81.46
TIGR03290	144	CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, s	81.42
COG1146	68	Ferredoxin [Energy production and conversion]	80.43
CHL00014	167	ndhI NADH dehydrogenase subunit I	80.42
TIGR00403	183	ndhI NADH-plastoquinone oxidoreductase subunit I p	80.18
PF13459	65	Fer4_15: 4Fe-4S single cluster domain	80.02

>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]

Probab=100.00  E-value=1.4e-64  Score=454.04  Aligned_cols=231  Identities=52%  Similarity=0.970  Sum_probs=214.0

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccccc
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPID  138 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~  138 (302)
                      +++|+|+||||+. + +|||++|+|++++ |+||||||.+|+.++||+|+||.+||+|+||||+|+|||+++|||+|.+.
T Consensus         2 ~~~~~i~R~~p~~-~-~p~~~~yev~~~~-~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~ING~prLAC~t~~~   78 (234)
T COG0479           2 TLKFKIYRYNPDD-D-KPYWQTYEVPYDE-GMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNINGKPRLACKTLMK   78 (234)
T ss_pred             cEEEEEEEECCCC-C-CcceEEEEecCCC-CCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEECCccccchhchhh
Confidence            6899999999998 4 9999999999997 99999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCCCc
Q 045926          139 GDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSY  218 (302)
Q Consensus       139 ~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~  218 (302)
                      +.....++|+||++||+|||||||+++||+++++++||+.......+++ ++|++++++.++++..||.||.|+++||++
T Consensus        79 ~~~~~~i~iePL~~fpVIkDLVVD~~~f~~~~~~ikp~~~~~~~~~~~~-~~q~pe~~~~~~~~~~CI~Cg~C~s~CP~~  157 (234)
T COG0479          79 DLEEGVITIEPLPNFPVIRDLVVDMEEFYEKLRKIKPYLIRDDEPDPGE-RLQSPEEREKLDELSECILCGCCTAACPSI  157 (234)
T ss_pred             hccCCceEEEECCCCCceeeeeeccHHHHHhhhccccceecCCcCCCcc-ccCCHHHHHHHHhhhhccccchhhhhCCcc
Confidence            8654589999999999999999999999999999999998853333334 899999999999999999999999999999


Q ss_pred             ccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhcCC
Q 045926          219 WWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQP  295 (302)
Q Consensus       219 ~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~~~  295 (302)
                      ++++ +|+||+++.+++||+.|+||+.+.+|+..+.++. ++|.|++|++|+++||+||++..+|..||+.+++++.
T Consensus       158 ~~~~-~f~GPa~l~~a~R~~~D~rd~~~~~R~~~~~~~~-gv~~C~~~~~C~~vCPK~i~p~~aI~~lk~~~~~~~~  232 (234)
T COG0479         158 WWNP-DFLGPAALRQAYRFLADSRDEGTAERLKILEDPD-GVWRCTTCGNCTEVCPKGIPPAKAIAELKRRLAKRGL  232 (234)
T ss_pred             cccc-CCcCHHHHHHHHHHhcCCcccchHHHHHhccCCC-CEecccccccccccCCCCCCHHHHHHHHHHHHHHHhc
Confidence            9765 8999999999999999999998888998777666 8999999999999999999999999999998877653

>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit

Probab=100.00  E-value=8.3e-64  Score=460.93  Aligned_cols=268  Identities=67%  Similarity=1.186  Sum_probs=234.7

Q ss_pred             ccccchhhhhccccccccccCCCCccCCChhhHHhHHHhhhccccccccccceeEEEEEEecCCCCCCCCCceeEEEEec
Q 045926            6 FLRRGYNKVAGIFGRAEAKKQDFPVLEGHPAAQESAEVALESRVTVQDNVKKVMKEFRIYRWNPDRPDSKPFLQSYHVDL   85 (302)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~   85 (302)
                      .||+++..|+|+..-               ++...+-..+|+..++.-.++.++++|+|+||||+. +.+|||++|+|++
T Consensus         5 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~p~~-~~~~~~~~y~v~~   68 (276)
T PLN00129          5 LLRRLAGAKAGLLAP---------------AAAASAAASAETKASSKGSKPSNLKEFQIYRWNPDN-PGKPHLQSYKVDL   68 (276)
T ss_pred             hhhhhhccccccccc---------------chhhhhhhcccccccCCCCCCCceEEEEEEeeCCCC-CCCceeEEEEeCC
Confidence            466777777776433               345666677888888777788889999999999987 5699999999998


Q ss_pred             CCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccccCCCCCceEEccCCCchhhhhhhhccch
Q 045926           86 SECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTN  165 (302)
Q Consensus        86 ~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~~~~~~~~~Iepl~~~~vikDLvvD~~~  165 (302)
                      .+.|+||||||++|+.++||+|+||.+||+|+||+|+|+|||+++|||.|.|.++.++.++||||++||+|||||||+++
T Consensus        69 ~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~ING~p~LAC~t~v~~~~~~~i~iePl~~fpVirDLvVD~~~  148 (276)
T PLN00129         69 NDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNIDGKNTLACLTKIDRDESGPTTITPLPHMFVIKDLVVDMTN  148 (276)
T ss_pred             CCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEECCcccccccccHhhcCCCcEEEEECCCCCeeeecccccHH
Confidence            75479999999999989999999999999999999999999999999999999864467899999999999999999999


Q ss_pred             hhhhccccccccccCCCCCCC-ccccCChhHHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcch
Q 045926          166 FYQQYKSIEPWLKTNMVPKDG-REYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDE  244 (302)
Q Consensus       166 ~~~~~~~~~~~l~~~~~~~~~-~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~  244 (302)
                      ||+++++++||+..+...+.. .+++|++++.+.++.+..||+||.|.++||++.++.++|+||++++.++|++.|+|+.
T Consensus       149 f~~klk~v~p~l~~~~~~~~~~~~~~q~pe~~~~~~~~~~CI~CG~C~saCPv~~~~~~~flGP~~l~~a~R~~~D~RD~  228 (276)
T PLN00129        149 FYQQYKSIEPWLKTKKPPEDGQKEHLQSKEDRAKLDGMYECILCACCSTSCPSYWWNPEKFLGPAALLHAYRWISDSRDE  228 (276)
T ss_pred             HHHHHHhccccccCCCCCCCCccccCCCHHHHHHHhhhhhCccccccccccCCCcccCcccccHHHHHHHHHhcCCcccc
Confidence            999999999999865433222 3688999999999999999999999999999987777899999999999999899987


Q ss_pred             hHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHH
Q 045926          245 LTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKH  290 (302)
Q Consensus       245 ~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l  290 (302)
                      ..+++++.+.+.. ++|.|++||+|+.+||+||++.++|..+|+.+
T Consensus       229 ~~~erl~~l~~~~-gl~~C~~C~~C~~vCPkgI~p~~~I~~lR~~~  273 (276)
T PLN00129        229 YTKERLEALDDEF-KLYRCHTIRNCSNACPKGLNPAKAIAKIKQLL  273 (276)
T ss_pred             chHHHHHHHHhcC-CCCcCcChhhccccCCCCCCHHHHHHHHHHHH
Confidence            6677877665555 89999999999999999999999999999764

>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]

Probab=100.00  E-value=2.2e-64  Score=439.02  Aligned_cols=238  Identities=65%  Similarity=1.188  Sum_probs=226.1

Q ss_pred             ccceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccc
Q 045926           55 VKKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACL  134 (302)
Q Consensus        55 ~~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~  134 (302)
                      .+.+.+||.||||||+.|+.+|+.|+|+|+.+++|.+|||||.+|+++.||||.||+|||+||||||+|+|||.+.|||.
T Consensus        42 ~~~rlKtFeIYRwnPd~pg~kP~~Q~y~vDL~~CGpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI~G~NtLACi  121 (288)
T KOG3049|consen   42 TGPRLKTFEIYRWNPDNPGDKPHLQTYEVDLNDCGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNINGTNTLACI  121 (288)
T ss_pred             cCCccceEEEEecCCCCCCCCccceeeeecHHhcchHHHHHHHHhhcccCCceehhhhhhccccccceeccCCCceeEEE
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCC--CccccCChhHHhhccccccCcccCccc
Q 045926          135 KPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKD--GREYRQSPADRKKLDGLYECILCACCT  212 (302)
Q Consensus       135 t~v~~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~--~~e~~~s~~~~~~~~~~~~CI~CG~C~  212 (302)
                      +.++....+..+|.||+|+.++||||.|++.||++|++++|||+.++...+  +++++||.+++..+++++.||+|.+|+
T Consensus       122 ~kId~n~sK~~kIyPLPHmfvvkDLVpDm~~FY~QYksIqPwlqrk~~~~~~g~~q~lQS~~dR~kLDGlYECILCACCs  201 (288)
T KOG3049|consen  122 CKIDQNESKSTKIYPLPHMFVVKDLVPDMTNFYAQYKSIEPWLQRKNPAKEPGKKQYLQSVEDRAKLDGLYECILCACCS  201 (288)
T ss_pred             EeeccCCcccceeecCcceeeehhhcccHHHHHHHHhcccHHhhcCCcccCccHHHHHHhHHHHHhhccHHHHHHHHHhc
Confidence            999986677889999999999999999999999999999999988776543  378999999999999999999999999


Q ss_pred             CCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhh
Q 045926          213 TSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHML  292 (302)
Q Consensus       213 ~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~  292 (302)
                      .+||+||||.+.|+||++++++|||+.|+||+.+.+|+..+.+++ .+|+|++..+|+..||+|++|+.+|.+++..+..
T Consensus       202 TSCPSYWWN~ekYLGPAvLmqAyRWiiDSRD~~t~eRl~~l~d~~-slyrCHtImNCtrtCPKgLNPg~aI~eiK~ll~~  280 (288)
T KOG3049|consen  202 TSCPSYWWNSEKYLGPAVLMQAYRWIIDSRDEATKERLAKLQDPF-SLYRCHTIMNCTRTCPKGLNPGKAIAEIKKLLAG  280 (288)
T ss_pred             CCCcccccCcccccCHHHHHHHHhhhhcchhHHHHHHHHHhcCch-hheehhhhhhhhhcCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999998888 9999999999999999999999999999998865


Q ss_pred             c
Q 045926          293 S  293 (302)
Q Consensus       293 ~  293 (302)
                      .
T Consensus       281 ~  281 (288)
T KOG3049|consen  281 A  281 (288)
T ss_pred             h
Confidence            3

>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional

Probab=100.00  E-value=2.1e-61  Score=439.09  Aligned_cols=233  Identities=31%  Similarity=0.630  Sum_probs=206.2

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI  137 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v  137 (302)
                      ++++|+|+||||+..+.+|||++|+|++++ ++||||||.+|+.++||||+||.+||+|+||+|+|.|||+++|||.|.+
T Consensus         3 ~~~~~~i~R~~p~~~~~~~~~~~y~v~~~~-~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~ING~~~LAC~t~v   81 (239)
T PRK13552          3 RTLTFNIFRYNPQDPGSKPHMVTYQLEETP-GMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVINGRPTLACRTLT   81 (239)
T ss_pred             ceEEEEEEeeCCCCCCCCcceEEEEecCCC-CCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEECCeEhhhhhccH
Confidence            379999999999754678999999999988 9999999999998899999999999999999999999999999999999


Q ss_pred             cCCCCCceEEccCCCchhhhhhhhccchhhhhc-cccccccccCCCCC-CCccccCChhHHhhccccccCcccCcccCCC
Q 045926          138 DGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQY-KSIEPWLKTNMVPK-DGREYRQSPADRKKLDGLYECILCACCTTSC  215 (302)
Q Consensus       138 ~~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~-~~~~~~l~~~~~~~-~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aC  215 (302)
                      .+..+++++||||++||+|||||||++.|++++ ++++||+....... ...+.++++++.+.++.+..||+||.|.++|
T Consensus        82 ~~~~~~~i~iePl~~fpVirDLvVD~~~~~~~~~~~v~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~saC  161 (239)
T PRK13552         82 SDYPDGVITLMPLPVFKLIGDLSVNTGKWFREMSERVESWIHTDKEFDIHRLEERMEPEEADEIYELDRCIECGCCVAAC  161 (239)
T ss_pred             hhcCCCcEEEEECCCCCcceeCccccHHHHHHHHHhhcCccccCCCCCCcccccCCCHHHHHHhhchhhccccchhHhhC
Confidence            986445899999999999999999999999999 89999997642221 1236789999999999999999999999999


Q ss_pred             CCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHH-HhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhc
Q 045926          216 PSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQ-ALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLS  293 (302)
Q Consensus       216 P~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~-~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~  293 (302)
                      |++.++ ..|+||+++++++|++.|+|++...+++. .+.++. ++|.|++||+|+++||++|++.++|.++|+.++.-
T Consensus       162 P~~~~~-~~f~GP~~~~~a~r~~~d~rd~~~~~~~~~~l~~~~-gi~~C~~C~~C~~vCPk~I~~~~~I~~lr~~~~~~  238 (239)
T PRK13552        162 GTKQMR-EDFVGAVGLNRIARFELDPRDERTDEDFYELIGNDD-GVFGCMSLLGCEDNCPKDLPLQQQIAYLRRKMAAT  238 (239)
T ss_pred             CCCccC-CCccChHHHHHHHHHhhCCCcchhHHHHHHHhccCC-CcCCCcCcCccchhCCCCCcHHHHHHHHHHHHHhc
Confidence            998754 47999999999999999999876556663 333333 89999999999999999999999999999887654

>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=100.00  E-value=1.7e-60  Score=431.66  Aligned_cols=231  Identities=51%  Similarity=1.014  Sum_probs=207.7

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI  137 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v  137 (302)
                      .+++|+|+||||+. +.+|||++|+|++.+.++||||+|.+|+ ++||+|+||.+||+|+||+|+|+|||+++|||+|.+
T Consensus         3 ~~~~~~i~R~~~~~-~~~~~~~~y~v~~~~~~~tvld~L~~ik-~~d~~l~fr~sCr~giCGsCa~~iNG~~~LaC~t~~   80 (235)
T PRK12575          3 DTRILHIYRYDPDD-DAAPRMQRYEIAPRAEDRMLLDVLGRVK-AQDETLSYRRSCREGICGSDAMNINGRNGLACLTNM   80 (235)
T ss_pred             ceEEEEEEeeCCCC-CCCceeEEEEecCCCCCCcHHHHHHHHH-hcCCCeeeeccCCCCCCCCCeeEECCeEcchhhCcH
Confidence            47899999999987 6799999999998763589999999999 789999999999999999999999999999999999


Q ss_pred             cCCCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCCC
Q 045926          138 DGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPS  217 (302)
Q Consensus       138 ~~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~  217 (302)
                      .+. ..+++||||++||+|||||||+++||+++++++||+.++...+ ..+.++++++.+.+.++..||+||.|.++||+
T Consensus        81 ~~~-~~~i~iePl~~~pvikDLvvD~~~~~~~~~~~~p~l~~~~~~~-~~~~~~~p~~~~~~~~~~~CI~CG~C~s~CP~  158 (235)
T PRK12575         81 QAL-PREIVLRPLPGLPVVRDLIVDMTDFFNQYHSIRPYLINDTVPP-ERERLQTPQEREQLDGLYECILCACCSTACPS  158 (235)
T ss_pred             hHc-CCCEEEeECCCCCccccceecCHHHHHHHHhccCccccCCCCc-cccccCCHHHHHHHHhhhhCcccccccccccC
Confidence            876 3579999999999999999999999999999999997654332 24688999999999999999999999999999


Q ss_pred             cccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhc
Q 045926          218 YWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLS  293 (302)
Q Consensus       218 ~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~  293 (302)
                      +..++++|+||++++.+++++.|+++....++++.+.++. ++|.|++||+|+++||+||++.++|..+|+.+++.
T Consensus       159 ~~~~~~~f~GP~~~~~a~r~~~D~rd~~~~~rl~~l~~~~-gl~~C~~C~~C~~vCPkgI~~~~~I~~lR~~~~~~  233 (235)
T PRK12575        159 YWWNPDKFVGPAGLLQAYRFIADSRDDATAARLDDLEDPY-RLFRCRTIMNCVDVCPKGLNPARAIGQIRTMLARR  233 (235)
T ss_pred             ccccCCCcCCHHHHHHHHHHHhCCCCCCcHHHHHhhhcCC-CcccccCcchhccccCCCCcHHHHHHHHHHHHHhc
Confidence            9877678999999999999999999876667776555444 89999999999999999999999999999887654

>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed

Probab=100.00  E-value=1.2e-59  Score=429.93  Aligned_cols=232  Identities=26%  Similarity=0.528  Sum_probs=205.3

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccc-------cCCCcccccCCCCCccCccEEEECCEEe
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAE-------TDSSLSYRRSCREGICGSCAMNIGGTNT  130 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~-------~dptL~~~~~C~~g~CG~C~V~VnG~~~  130 (302)
                      .+++|+|+|||| . +.+||||+|+|++++ ++||||||.+|+.+       +|++|+||.+||+|+||+|+|+|||++.
T Consensus         4 ~~~~~~i~R~~~-~-~~~~~~q~y~v~~~~-~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~ING~p~   80 (249)
T PRK08640          4 KTVRLIIKRQDG-P-DSKPYWEEFEIPYRP-NMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVINGKPR   80 (249)
T ss_pred             cEEEEEEEeeCC-C-CCCceeEEEEecCCC-CCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEECCccc
Confidence            479999999999 3 568999999999988 99999999999863       4788999999999999999999999999


Q ss_pred             ccccccccCCCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCc
Q 045926          131 VACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCAC  210 (302)
Q Consensus       131 laC~t~v~~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~  210 (302)
                      |||+|.+.+. +++++||||++||||||||||+++|++++++++||+..+...+.+.+.++++++...++++..||+||.
T Consensus        81 LAC~t~v~~~-~~~i~iePl~~fpVikDLvVD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~CG~  159 (249)
T PRK08640         81 QACTALIDQL-EQPIRLEPMSTFPVVRDLQVDRSRMFDNLKRVKAWIPIDGTYDLGPGPRMPEEKRQWAYELSKCMTCGC  159 (249)
T ss_pred             hhhhChHHHc-CCcEEEEECCCCCccccCcEEChHHHHHHHhhCCccccCCCCCCCcccCCCHHHHHHHhhhhhccCcCc
Confidence            9999999876 568999999999999999999999999999999999876543334567899999999999999999999


Q ss_pred             ccCCCCCcccCCCCcccHHHHHHHHHHhccC-cchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHH
Q 045926          211 CTTSCPSYWWNPEEYLGPAALLHAYRWICDS-RDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTK  289 (302)
Q Consensus       211 C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~-rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~  289 (302)
                      |+++||++..+ ++|+||+++.+++++..++ ++....+|++.+.++. ++|.|++||+|+.+||+||++.+.|..+|+.
T Consensus       160 C~saCP~~~~~-~~f~GP~~l~ka~r~~~d~~rd~~~~~rl~~l~~~~-g~~~C~~Cg~C~~vCPkgI~~~~~I~~lr~~  237 (249)
T PRK08640        160 CLEACPNVNEK-SDFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDG-GIADCGNAQNCVRVCPKGIPLTTSIAAMNRE  237 (249)
T ss_pred             ccccCCCCccC-CCccChHHHHHHHHHhcCcCcCccHHHHHHHhhcCC-CeeCCcCcCcccccCCCCCCHHHHHHHHHHH
Confidence            99999999855 5799999999999998888 4433456776664444 8999999999999999999999999999999


Q ss_pred             HhhcCC
Q 045926          290 HMLSQP  295 (302)
Q Consensus       290 l~~~~~  295 (302)
                      +++++.
T Consensus       238 ~~~~g~  243 (249)
T PRK08640        238 TTKQSF  243 (249)
T ss_pred             HHHHHH
Confidence            887653

>PRK12386 fumarate reductase iron-sulfur subunit; Provisional

Probab=100.00  E-value=8.2e-57  Score=410.57  Aligned_cols=228  Identities=26%  Similarity=0.507  Sum_probs=202.4

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccccc
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPID  138 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~  138 (302)
                      +++|+|+||||+.    +|||+|+|++++ ++||||||++|+.++||+|+|+.||+.|+||+|+|.|||+++|||+|++.
T Consensus         4 ~~~~~I~R~~~~~----~~~q~y~v~~~~-~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~InG~p~laC~t~~~   78 (251)
T PRK12386          4 TAKFRVWRGDASG----GELQDYTVEVNE-GEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEINGRPRLMCMTRMS   78 (251)
T ss_pred             EEEEEEEcCCCCC----CceEEEEEeCCC-CCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEECccEeccHHhHHH
Confidence            5899999999654    499999999988 89999999999988999999999999999999999999999999999998


Q ss_pred             CCCC-CceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCCC
Q 045926          139 GDTS-KPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPS  217 (302)
Q Consensus       139 ~~~~-~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~  217 (302)
                      +..+ ++++||||++||+|||||||++.||+++++++||+..+...+  .++++++++.+.+..+..||+||.|+++||+
T Consensus        79 ~~~~~~~itiepl~~fpVikDLvVD~~~~~~~l~~i~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~CI~CG~C~s~CPv  156 (251)
T PRK12386         79 TFDEDETVTVTPMRTFPVIRDLVTDVSFNYEKAREIPSFTPPKDLQP--GEYRMQQVDVERSQEFRKCIECFLCQNVCHV  156 (251)
T ss_pred             HhCCCCeEEEccCCCCCccccceEEcHHHHHHHHhcCCcccCCCCCc--cccCCCHHHHHHHhchhhcccCCcccCcCCc
Confidence            7643 579999999999999999999999999999999997544332  4678999999999999999999999999999


Q ss_pred             cccC---CCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHH-HHHHHHHHHhhc
Q 045926          218 YWWN---PEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPAD-AIHKMKTKHMLS  293 (302)
Q Consensus       218 ~~~~---~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~-~I~~lR~~l~~~  293 (302)
                      +.++   +++|+||++++++++++.|+||.  .+|+..+.... ++|.|++||+|+++||+||++.+ .|..+|+.+.+.
T Consensus       157 ~~~~~~~~~~f~GP~~~~~a~r~~~D~Rd~--~~rl~~~~~~~-gl~~C~~C~~C~~vCPkgI~~~~~~I~~lr~~~~~~  233 (251)
T PRK12386        157 VRDHEENKPAFAGPRFLMRIAELEMHPLDT--ADRRAEAQEEH-GLGYCNITKCCTEVCPEHIKITDNALIPMKERVVDR  233 (251)
T ss_pred             ccccCCCcccccCHHHHHHHHHhhcCccch--HHHHHHhhccc-CcccCcCCCCcCCcCCCCcChhHHHHHHHHHHHHHh
Confidence            9764   36799999999999999999986  35665544334 89999999999999999999985 899999887776


Q ss_pred             CCc
Q 045926          294 QPM  296 (302)
Q Consensus       294 ~~~  296 (302)
                      +..
T Consensus       234 ~~~  236 (251)
T PRK12386        234 KYD  236 (251)
T ss_pred             ccC
Confidence            543

>PRK12385 fumarate reductase iron-sulfur subunit; Provisional

Probab=100.00  E-value=4.8e-57  Score=411.83  Aligned_cols=233  Identities=33%  Similarity=0.608  Sum_probs=207.5

Q ss_pred             ceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccc
Q 045926           57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKP  136 (302)
Q Consensus        57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~  136 (302)
                      +++++|+|+||||+. ++.|||++|+|++++ |+||||||.+|+.++||+|+|+.+|++|+||+|+|.|||+++|||.|.
T Consensus         4 ~~~v~~~i~R~~~~~-~~~~~~~~~~v~~~~-~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~InG~~~laC~t~   81 (244)
T PRK12385          4 MKNLKIEVLRYNPEV-DTEPHSQTYEVPYDE-TTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTF   81 (244)
T ss_pred             CcEEEEEEEeeCCCC-CCCceeEEEEeeCCC-CCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceECccChhhHhhH
Confidence            457999999999988 678999999999988 999999999999889999999999999999999999999999999999


Q ss_pred             ccCCCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCC
Q 045926          137 IDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCP  216 (302)
Q Consensus       137 v~~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP  216 (302)
                      +.++ ++.++|+||++||+|||||||+++|+++++.++||+..+...+...+.++++++...+..+..||+||.|+++||
T Consensus        82 ~~~~-~~~~~iePl~~fpvikDLvvD~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~saCP  160 (244)
T PRK12385         82 LRDY-TGGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNDRTPDDGPNKQTPAQMAKYHQFSGCINCGLCYAACP  160 (244)
T ss_pred             HHHc-CCCeEEeeCCCCCeeeeCeeecHHHHHHHHHhcCeeeCCCCCCCcccccCCHHHHHHHHHHHhcCcCccccCcCc
Confidence            9986 457999999999999999999999999999999999765433323356788999888889999999999999999


Q ss_pred             CcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhcC
Q 045926          217 SYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQ  294 (302)
Q Consensus       217 ~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~~  294 (302)
                      ++..+ ++|+||+++++++|+..++|+....+++..+.... ++|.|++||+|+++||+||++.++|..+|+.+.+..
T Consensus       161 ~~~~~-~~y~GP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~-gl~~C~~C~~C~~vCP~~I~~~~~I~~~r~~~~~~~  236 (244)
T PRK12385        161 QFGLN-PEFIGPAAITLAHRYNLDSRDHGKKERMKQLNGQN-GVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESAKDF  236 (244)
T ss_pred             CcccC-CCCCCHHHHHHHHHHhhcCCccchHHHHHhhcccc-hhhhCcCcccccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            99754 67999999999999988999876666665553333 899999999999999999999999999998776653

>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=100.00  E-value=3.3e-56  Score=422.56  Aligned_cols=232  Identities=37%  Similarity=0.715  Sum_probs=206.9

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccccc
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPID  138 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~  138 (302)
                      .++|+|+||||+.   +|||++|+|++++ |+||||||++|+.++||||||+.+|+.|+||+|+|+|||+++|||.|.+.
T Consensus         2 ~i~~~i~R~~~~~---~p~~~~~~v~~~~-~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG~~~laC~t~v~   77 (329)
T PRK12577          2 EVLFKILRQKQNS---APYVQTYTLEVEP-GNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGRSALACKENVG   77 (329)
T ss_pred             eEEEEEEeeCCCC---CCeEEEEEEECCC-CChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECCeeecCcccchh
Confidence            4789999999964   8999999999988 99999999999988889999999999999999999999999999999997


Q ss_pred             CC----------CCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCccc
Q 045926          139 GD----------TSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILC  208 (302)
Q Consensus       139 ~~----------~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~C  208 (302)
                      +.          .+++++||||++||+|||||||+++||++++.++||+..........++++++++.+.++.+..||+|
T Consensus        78 ~~~~~~~~~~~~~~~~i~iePl~~~pvikDLvVD~~~~~~k~~~v~p~~~~~~~~~~~~e~~~~p~~~~~~~~~~~Ci~C  157 (329)
T PRK12577         78 SELARLSDSNSGAIPEITIAPLGNMPVIKDLVVDMSSFWQNLEAVDPYVSTAARQVPEREFLQTPEERSKLDQTGNCILC  157 (329)
T ss_pred             hhhccccccccCCCCeEEEEECCCCCccccceeccHHHHHHHHhccCccccCCCCCCcccccCCHHHHHHHHHhhhCccc
Confidence            62          13689999999999999999999999999999999998654432345789999999999999999999


Q ss_pred             CcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHH
Q 045926          209 ACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKT  288 (302)
Q Consensus       209 G~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~  288 (302)
                      |.|+++||++..+ ++|+||++++.++|++.|+++....++++.+.+...++|.|++|++|+.+||++|++.+.|..+|+
T Consensus       158 G~C~s~CP~~~~~-~~f~GP~~~~~a~r~~~d~rd~~~~~~l~~~~~~~~giw~C~~C~~C~~~CPk~I~~~~~I~~lr~  236 (329)
T PRK12577        158 GACYSECNAREVN-PEFVGPHALAKAQRMVADSRDTATEQRLELYNQGTAGVWGCTRCYYCNSVCPMEVAPLDQITKIKQ  236 (329)
T ss_pred             CcccccCCCCCcC-cCcCCHHHHHHHHHHhhCCcchhHHHHHHHHhcCCCccccCcChhhhhhhCCCCCchHHHHHHHHH
Confidence            9999999999865 579999999999999999998766677765542333899999999999999999999999999999


Q ss_pred             HHhhcCC
Q 045926          289 KHMLSQP  295 (302)
Q Consensus       289 ~l~~~~~  295 (302)
                      .+.+++.
T Consensus       237 ~~~~~~~  243 (329)
T PRK12577        237 EILARKD  243 (329)
T ss_pred             HHHHhcC
Confidence            8877653

>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed

Probab=100.00  E-value=9.5e-56  Score=400.92  Aligned_cols=230  Identities=58%  Similarity=1.088  Sum_probs=205.2

Q ss_pred             EEEEEecCCCCCCCCCceeEEEEecC-CCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccccC
Q 045926           61 EFRIYRWNPDRPDSKPFLQSYHVDLS-ECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDG  139 (302)
Q Consensus        61 ~~~I~r~~p~~~~~~~~~~~y~v~~~-~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~~  139 (302)
                      ||+|+||||+. +++|||+.|+|+++ + |+||||||++++.++||+|+|+.+|+.|+||+|+|+|||+++|||+|++.+
T Consensus         1 ~~~v~r~~~~~-~~~~~~~~~~v~~~~~-~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~vnG~~~laC~t~~~~   78 (232)
T PRK05950          1 TFKIYRYNPDV-DANPRMQTYEVDVDEC-GPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNINGKNGLACITPISD   78 (232)
T ss_pred             CeEEEecCCCC-CCCceeEEEEeCCCCC-CCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEECCcCccchhChHhH
Confidence            58999999998 78999999999998 7 999999999998788999999999999999999999999999999999998


Q ss_pred             CCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCCCcc
Q 045926          140 DTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYW  219 (302)
Q Consensus       140 ~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~~  219 (302)
                      +.+++++||||++||+|||||||++.|+++++.++||+.++...+ ..+..+++++...+..+..||+||.|.++||++.
T Consensus        79 ~~~~~~tiepl~~~~vikDLvvD~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~  157 (232)
T PRK05950         79 LKKGKIVIRPLPGLPVIKDLVVDMTQFYAQYRSIKPYLINDTPPP-ARERLQSPEDREKLDGLYECILCACCSTSCPSFW  157 (232)
T ss_pred             cCCCeEEEEECCCCCeeeeceeehHHHHHHHHhccCeecCCCCCC-chhccCCHHHHHHHHhHHhccccccccccCCccc
Confidence            756789999999999999999999999999999999997654322 2356788898888899999999999999999997


Q ss_pred             cCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhcC
Q 045926          220 WNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQ  294 (302)
Q Consensus       220 ~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~~  294 (302)
                      .++++|+||++++.+++++.++++....+++..+.++. ++|.|++||+|+.+||+||++.++|..||+.+++++
T Consensus       158 ~~~~~~~gp~~l~~~~r~~~d~rd~~~~~~~~~~~~~~-~i~~C~~Cg~C~~~CP~gi~~~~~I~~lR~~~~~~~  231 (232)
T PRK05950        158 WNPDKFLGPAALLQAYRFIADSRDEATGERLDILDDPF-GVFRCHTIMNCVEVCPKGLNPTKAIGEIKRMLLERR  231 (232)
T ss_pred             cCCCCCCCHHHHHHHHHHhhCCccchhHHHHHHhhccc-ccccCcCcCCcCccccCCCCHHHHHHHHHHHHHhhc
Confidence            66667999999999999988888765556665444333 789999999999999999999999999999987654

>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=100.00  E-value=2.7e-54  Score=400.64  Aligned_cols=231  Identities=34%  Similarity=0.668  Sum_probs=203.5

Q ss_pred             ceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccc
Q 045926           57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKP  136 (302)
Q Consensus        57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~  136 (302)
                      +++++|+||||||+.   .|||++|+|++++ |+||||||++|+..+||+|+|+.+|+.|+||+|+|+|||+++|||.|.
T Consensus         6 ~~~~~~~i~R~~~~~---~~~~~~~~v~~~~-~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~ING~~~laC~t~   81 (279)
T PRK12576          6 EKEVIFKVKRYDPEK---GSWWQEYKVKVDR-FTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKINGEPRLACKTL   81 (279)
T ss_pred             CcEEEEEEEecCCCC---CCeEEEEEEecCC-CCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEECCcEeccccCc
Confidence            467999999999975   4999999999988 999999999999878899999999999999999999999999999999


Q ss_pred             ccCC---CCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCC-CccccCChhHHhhccccccCcccCccc
Q 045926          137 IDGD---TSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKD-GREYRQSPADRKKLDGLYECILCACCT  212 (302)
Q Consensus       137 v~~~---~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~s~~~~~~~~~~~~CI~CG~C~  212 (302)
                      +.+.   .++.++||||++||+|||||||+++||+++++++||+.+...... ..+.++++++.+.+.+...||+||+|+
T Consensus        82 v~~~~~~~~~~~tiePl~~~~vikDLvvD~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~CI~CG~C~  161 (279)
T PRK12576         82 VLDVAKKYNSVITIEPMDYFKVVKDLIVDFDEFYERMFKVKPRLYRAKEVLEGKAEHRLKPEDQKELWKFAQCIWCGLCV  161 (279)
T ss_pred             HHHhhcCCCCcEEEEECCCCceeecceechHHHHHHHHhccceeccCccCCCCccccccCHHHHHHhhcchhCcccCccc
Confidence            9874   356899999999999999999999999999999999976543221 236788999999999999999999999


Q ss_pred             CCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhh
Q 045926          213 TSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHML  292 (302)
Q Consensus       213 ~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~  292 (302)
                      ++||++..+ ++|+||.+++++++++.++++....+++..+  .. ++|.|++||+|+.+||++|++.++|..+|+....
T Consensus       162 ~~CP~~~~~-~~flgP~~l~~a~r~~~d~rd~~~~~rl~~~--~~-~i~~C~~Cg~C~~~CP~~I~~~~~I~~lR~~~~~  237 (279)
T PRK12576        162 SACPVVAID-PEFLGPAAHAKGYRFLADPRDTITEERMKIL--ID-SSWRCTYCYSCSNVCPRDIEPVTAIKKTRSFTRV  237 (279)
T ss_pred             ccCCCcccc-CCcCCHHHHHHHHHHhcCccccchHHHHHHH--cC-cCCcccCcccchhhCCCCCcHHHHHHHHHHHHHh
Confidence            999999754 5799999999999998898876655666433  22 7899999999999999999999999999988654


Q ss_pred             cCC
Q 045926          293 SQP  295 (302)
Q Consensus       293 ~~~  295 (302)
                      .++
T Consensus       238 ~~~  240 (279)
T PRK12576        238 YKP  240 (279)
T ss_pred             cCC
Confidence            443

>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein

Probab=100.00  E-value=2e-53  Score=382.81  Aligned_cols=220  Identities=51%  Similarity=0.982  Sum_probs=193.1

Q ss_pred             EEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccccCCCCC
Q 045926           64 IYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSK  143 (302)
Q Consensus        64 I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~~~~~~  143 (302)
                      |+||||+. +++|||++|+|++++ |+||||||++++.++||+|+|+.+|+.|+||+|+|+|||++++||+|++.++..+
T Consensus         1 i~R~~~~~-~~~~~~~~~~v~~~~-~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~~   78 (220)
T TIGR00384         1 VLRFNPDV-DEKPHLQSYEVPADE-GMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQP   78 (220)
T ss_pred             CcCcCCCC-CCCceeEEEEEeCCC-CCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCCC
Confidence            78999997 679999999999988 9999999999997889999999999999999999999999999999999985234


Q ss_pred             ceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCCCcccCCC
Q 045926          144 PTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPE  223 (302)
Q Consensus       144 ~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~~  223 (302)
                      .++||||++||+|||||||++.|+++++.++||+..........+.++++++...+.++.+||+||.|+++||++..+ .
T Consensus        79 ~~~iepl~~~pvikDLvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~~~-~  157 (220)
T TIGR00384        79 VMKIEPLPNLPVIKDLVVDMGPFYAKLEAIKPYLIRKSQPEPEGEFLQTPEQREKLDQLSGCILCGCCYSSCPAFWWN-P  157 (220)
T ss_pred             cEEEeeCCCCceeeeeeechHHHHHHHHhcCCeecCCCCCCccccccCCHHHHHHHhhhhhccccccccccCCCCccC-C
Confidence            589999999999999999999999999999999976542221235678888888889999999999999999999754 4


Q ss_pred             CcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHH
Q 045926          224 EYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK  287 (302)
Q Consensus       224 ~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR  287 (302)
                      +|+||++++.+++++.++++....++++.+.+.. ++|.|++||+|+++||++|++.++|..||
T Consensus       158 ~~~gp~~~~~~~r~~~d~~~~~~~~r~~~~~~~~-~~~~C~~Cg~C~~~CP~~I~~~~~I~~lR  220 (220)
T TIGR00384       158 EFLGPAALTAAYRFLIDSRDHATKDRLEGLNDKN-GVWRCTTCMNCSEVCPKGVNPARAIEKLK  220 (220)
T ss_pred             CCcCHHHHHHHHHHhcCCCccchHHHHHHhhccC-CCccCccccccccccCCCCCHHHHHHHhC
Confidence            6999999999999988888755455655443333 89999999999999999999999999875

Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.

>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated

Probab=100.00  E-value=9e-52  Score=377.63  Aligned_cols=225  Identities=24%  Similarity=0.466  Sum_probs=179.8

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEe-cCCCchhHHHHHHHccccc----CCCcccccCCCCCccCccEEEECCEE----
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVD-LSECGPMVLDALQKIKAET----DSSLSYRRSCREGICGSCAMNIGGTN----  129 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~-~~~~g~tvLdal~~i~~~~----dptL~~~~~C~~g~CG~C~V~VnG~~----  129 (302)
                      .++|+|+||||.  +.+||||+|+|+ +++ ++||||||.+|+.++    +++|+||.+||+|+||||+|+|||++    
T Consensus         2 ~~~~~i~R~~~~--~~~~~~q~y~v~~~~~-~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~ING~p~~~~   78 (250)
T PRK07570          2 KLTLKIWRQKGP--DDKGKFETYEVDDISP-DMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVINGRPHGPD   78 (250)
T ss_pred             eEEEEEEecCCC--CCCceeEEEEecCCCC-CCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEECCccCCCC
Confidence            478999999963  468999999999 777 899999999997543    45699999999999999999999999    


Q ss_pred             --eccccccccCCC-CCceEEccCC--CchhhhhhhhccchhhhhccccccccccCC-CCCCCccccCChhHHhhccccc
Q 045926          130 --TVACLKPIDGDT-SKPTIITPLP--HMFVIKDLVVDLTNFYQQYKSIEPWLKTNM-VPKDGREYRQSPADRKKLDGLY  203 (302)
Q Consensus       130 --~laC~t~v~~~~-~~~~~Iepl~--~~~vikDLvvD~~~~~~~~~~~~~~l~~~~-~~~~~~e~~~s~~~~~~~~~~~  203 (302)
                        +|||+|.+.+.. +++++|+||+  +||||||||||++.| +++++++||+.+.. ..+++.+.++++++.+.+..+.
T Consensus        79 ~~~LAC~t~~~~~~~~~~i~iePl~~~~fpvikDLvVD~~~~-~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (250)
T PRK07570         79 RGTTTCQLHMRSFKDGDTITIEPWRAAAFPVIKDLVVDRSAL-DRIIQAGGYVSVNTGGAPDANAIPVPKEDADRAFDAA  157 (250)
T ss_pred             cccchhhhhhhhcCCCCeEEEEECCCCCCCeeeeceeecHHH-HHHHhcCCeEecCCCCCCCccccCCCHHHHHhhhCcc
Confidence              899999998753 4689999999  999999999999996 89999999998653 2233346789999999999999


Q ss_pred             cCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchh---HHHHHHHhhhcccccccCcccccccccCCCCCCHH
Q 045926          204 ECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDEL---TEERLQALTEDERKLYRCRAIKNCTATCPKGLDPA  280 (302)
Q Consensus       204 ~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~---~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~  280 (302)
                      .||+||.|+++||++.  .+.|+||++ ..+ ++....++..   ..+++..+ +.. ++|.|++||.|+++||++|++.
T Consensus       158 ~CI~CG~C~saCP~~~--~~~f~Gp~~-~~~-~l~p~~~~~r~~~~~~~~~~~-~~~-gv~~C~~Cg~Cs~VCPk~I~~~  231 (250)
T PRK07570        158 ACIGCGACVAACPNGS--AMLFTGAKV-SHL-ALLPQGQPERARRVRAMVAQM-DEE-GFGNCTNTGECEAVCPKGISLE  231 (250)
T ss_pred             ccCCCcccccccCCcc--cccccchhh-hhh-hhCcccchhHHHHHHHHHHHH-hcc-CcccCcccCccccccCCCCCHH
Confidence            9999999999999986  347999875 333 3322112211   11122222 223 7899999999999999999985


Q ss_pred             HHHHHHHHHHhhcC
Q 045926          281 DAIHKMKTKHMLSQ  294 (302)
Q Consensus       281 ~~I~~lR~~l~~~~  294 (302)
                       .|..+++.+...+
T Consensus       232 -~I~~l~r~~~~~~  244 (250)
T PRK07570        232 -NIARMNREYLRAS  244 (250)
T ss_pred             -HHHHHHHHHHHHH
Confidence             7777766555443

>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional

Probab=100.00  E-value=2.8e-42  Score=342.82  Aligned_cols=218  Identities=36%  Similarity=0.689  Sum_probs=193.6

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI  137 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v  137 (302)
                      .++||+||||||+. + .|||++|+|++++ |+||||||++++.+++|+|+|+.+|+.|+||+|.|+|||+.+|||+|.+
T Consensus         2 ~~~~~~i~r~~~~~-~-~~~~~~~~v~~~~-~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~~~laC~~~~   78 (486)
T PRK06259          2 KMITITVKRFDPEK-D-EPHFESYEVPVKE-GMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTINGEPVLACKTEV   78 (486)
T ss_pred             ceEEEEEEecCCCC-C-CceeEEEEEeCCC-CChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEECCeEecccccCC
Confidence            57999999999998 4 7999999999988 9999999999987789999999999999999999999999999999999


Q ss_pred             cCCCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCCC
Q 045926          138 DGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPS  217 (302)
Q Consensus       138 ~~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~  217 (302)
                      .+    .++|+|++ +|+++|||+|++.|+.++..+++|+.++.      +.++++++...+.++..||+||.|.++||+
T Consensus        79 ~~----~~~i~~~~-~~~~~~~v~d~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~  147 (486)
T PRK06259         79 ED----GMIIEPLD-FPVIKDLIVDREPYYKKLKSLRNYLQRKN------EKITYPEDIEDIKKLRGCIECLSCVSTCPA  147 (486)
T ss_pred             CC----CCEEEecC-CcchhccccccHHHHHHHHhhcCCCCCCc------cCCCCHHHHHHHhCchhcccCccccccCCC
Confidence            86    48999999 99999999999999999999999997643      245788999999999999999999999999


Q ss_pred             cccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCH-HHHHHHHHHHHhhcCC
Q 045926          218 YWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDP-ADAIHKMKTKHMLSQP  295 (302)
Q Consensus       218 ~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~-~~~I~~lR~~l~~~~~  295 (302)
                      +..  ++|+||+++..++++..++++..  +++.... .. ++|.|++||+|+.+||+||++ .++|..+|+.+.+.+.
T Consensus       148 ~~~--~~~~gp~~~~~~~~~~~~~~~~~--~~~~~~~-~~-~~~~C~~C~~C~~~CP~gi~~~~~~i~~~R~~~~~~g~  220 (486)
T PRK06259        148 RKV--SDYPGPTFMRQLARFAFDPRDEG--DREKEAF-DE-GLYNCTTCGKCVEVCPKEIDIPGKAIEKLRALAFKKGL  220 (486)
T ss_pred             Ccc--ccCcCHHHHHHHHHHhhCCcchh--hHHHHHh-cC-CCcCCCCcCcccCcCCCCCCchHHHHHHHHHHHHHccC
Confidence            985  57999999999998877777653  2333222 22 789999999999999999998 9999999998877664

>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B

Probab=100.00  E-value=5.9e-37  Score=246.59  Aligned_cols=107  Identities=46%  Similarity=0.878  Sum_probs=92.6

Q ss_pred             EEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccccCC
Q 045926           61 EFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGD  140 (302)
Q Consensus        61 ~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~~~  140 (302)
                      ||+|+||||+.+..++||++|+|++.+ ++||||||.+|+.++||+|+||.+|++|+||+|+|+|||+++|||.|.+.+.
T Consensus         1 t~~I~R~~~~~~~~~~~~~~y~v~~~~-~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~ING~~~LAC~t~v~~~   79 (110)
T PF13085_consen    1 TLRIFRFDPESDEGEPYYQEYEVPVEP-GMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRINGRPRLACKTQVDDL   79 (110)
T ss_dssp             EEEEEE--TTSTTSS-EEEEEEEEGGS-TSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEETTEEEEGGGSBGGGC
T ss_pred             CEEEEEcCCCCCCCCCeEEEEEecCCC-CCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEECCceecceeeEchhc
Confidence            699999999886669999999999998 9999999999999999999999999999999999999999999999999986


Q ss_pred             CC---CceEEccCCCchhhhhhhhccchhhh
Q 045926          141 TS---KPTIITPLPHMFVIKDLVVDLTNFYQ  168 (302)
Q Consensus       141 ~~---~~~~Iepl~~~~vikDLvvD~~~~~~  168 (302)
                      ..   +.++||||++||+|||||||++.||+
T Consensus        80 ~~~~~~~i~IePL~~fpVirDLvVD~~~f~e  110 (110)
T PF13085_consen   80 IEKFGNVITIEPLPNFPVIRDLVVDMSPFFE  110 (110)
T ss_dssp             TTSETBEEEEEESTTSBEEETTEEETHHHHH
T ss_pred             cCCCcceEEEEECCCCCcceeCceeChHHcC
Confidence            43   36999999999999999999999984

...

>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]

Probab=99.88  E-value=3.1e-24  Score=215.02  Aligned_cols=192  Identities=19%  Similarity=0.296  Sum_probs=129.7

Q ss_pred             cceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCC-CCCccCccEEEECCEEecccc
Q 045926           56 KKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSC-REGICGSCAMNIGGTNTVACL  134 (302)
Q Consensus        56 ~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C-~~g~CG~C~V~VnG~~~laC~  134 (302)
                      ..++++++|..              -++++++ |+|||+|+++.+ +++|+|||+.+- +.+.|++|.|+|||+.+.||+
T Consensus         2 ~~~~i~vtidg--------------~~~~v~~-G~tiL~a~~~~g-I~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCs   65 (978)
T COG3383           2 AEKMITVTIDG--------------RSIEVEE-GTTILRAANRNG-IEIPHICYHESLGPIGSCDTCLVEIDGKLVRSCS   65 (978)
T ss_pred             CceeEEEEECC--------------eEEecCC-ChHHHHHHHhcC-CcccceeccCCCCcccccceEEEEecCceecccc
Confidence            45679999998              3455566 999999999988 579999999985 579999999999999999999


Q ss_pred             ccccCC---CCCceEEccCCCchhhhhhhhccchhhh----------hcccccccc-ccCCCCC-CCc--cccCChhHHh
Q 045926          135 KPIDGD---TSKPTIITPLPHMFVIKDLVVDLTNFYQ----------QYKSIEPWL-KTNMVPK-DGR--EYRQSPADRK  197 (302)
Q Consensus       135 t~v~~~---~~~~~~Iepl~~~~vikDLvvD~~~~~~----------~~~~~~~~l-~~~~~~~-~~~--e~~~s~~~~~  197 (302)
                      |.++++   .+++.+|..++  ...-|+++..|++++          .++.+.-.+ ..+.+++ +++  .+..+...+.
T Consensus        66 T~v~dGm~v~t~s~rvk~~r--~~~md~~l~nH~LyC~vCd~nnGdCelh~~~~~~gl~~q~y~y~~k~~~~~~Des~Pf  143 (978)
T COG3383          66 TPVEDGMVVRTNSERVKEAR--REAMDRILSNHPLYCTVCDNNNGDCELHNMVMALGLTEQRYPYEEKNPPYPKDESNPF  143 (978)
T ss_pred             ccccCCcEEecccHHHHHHH--HHHHHHHHhcCCcCccccCCCCCCchHHHHHHHhCCCccccCccccCCCCCcccCCCe
Confidence            999983   23333343332  245566666677664          333332233 2233332 223  3444555577


Q ss_pred             hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhh-hcccccccCcccccccccCCCC
Q 045926          198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALT-EDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~-~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      ..++.++||+||+|+.+|...+.+.       ++-..|+. .++|.       -+.. .+. ....|++||.|++|||++
T Consensus       144 y~ydp~qCIlCgRCVeaCqevqv~e-------aL~i~w~~-~~pRV-------~wd~~~~i-~~SSCVsCG~CvtVCP~n  207 (978)
T COG3383         144 YIYDPNQCILCGRCVEACQEVQVNE-------ALTIDWRG-EDPRV-------IWDNDVPI-NESSCVSCGACVTVCPVN  207 (978)
T ss_pred             EEecchheeehhHHHHHHHhhhcee-------EEEeeccc-CCcce-------ecCCCCcc-ccccccccCccceecchh
Confidence            8889999999999999999766321       11122221 23332       1111 123 568999999999999998


Q ss_pred             CCHHH
Q 045926          277 LDPAD  281 (302)
Q Consensus       277 I~~~~  281 (302)
                      +-...
T Consensus       208 ALmek  212 (978)
T COG3383         208 ALMEK  212 (978)
T ss_pred             hhhhh
Confidence            86444

>PRK08493 NADH dehydrogenase subunit G; Validated

Probab=99.86  E-value=1.5e-22  Score=210.74  Aligned_cols=197  Identities=16%  Similarity=0.215  Sum_probs=118.8

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEECCEEeccccccc
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIGGTNTVACLKPI  137 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~VnG~~~laC~t~v  137 (302)
                      |++|+|++              .+|++.+ |+|||+|++.+| +++|+|||+.+|. .|.||.|.|+|||++++||.|++
T Consensus         1 mv~i~IdG--------------~~v~~~~-G~til~aa~~~g-i~iP~lC~~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v   64 (819)
T PRK08493          1 MITITING--------------KECEAQE-GEYILNVARRNG-IFIPAICYLSGCSPTLACRLCMVEADGKRVYSCNTKA   64 (819)
T ss_pred             CeEEEECC--------------EEEEeCC-CCHHHHHHHHcC-CccccccccCCCCCCccccceEEEECCEEeccccCCC
Confidence            57899988              3455567 999999999998 5699999999997 69999999999999999999999


Q ss_pred             cCC---CCCceEEccCCCchhhhhhhhccchhhh---------hcccccccccc-CCCCCCCccccCChhHHhhcccccc
Q 045926          138 DGD---TSKPTIITPLPHMFVIKDLVVDLTNFYQ---------QYKSIEPWLKT-NMVPKDGREYRQSPADRKKLDGLYE  204 (302)
Q Consensus       138 ~~~---~~~~~~Iepl~~~~vikDLvvD~~~~~~---------~~~~~~~~l~~-~~~~~~~~e~~~s~~~~~~~~~~~~  204 (302)
                      .++   .|++..+...|  ..+-.|++..+++.+         .+|.+.-++.. ..+++.....+.........++.++
T Consensus        65 ~dGM~V~T~s~~v~~~R--k~vle~ll~~HpldC~~Cd~~geCeLQ~~a~~~gv~~~~~~~~~~~~~~~~~~~I~~D~~r  142 (819)
T PRK08493         65 KEGMNILTNTPNLMDER--NAIMQTYDVNHPLECGVCDKSGECELQNFTHEMGVNHQPYAIKDTHKPHKHWGKINYDPSL  142 (819)
T ss_pred             CCCCEEEecCHHHHHHH--HHHHHHHHhccCCCCCcCCCCCCcHHHHHHHHhCCCCCcCccccccccccCCCcEEechhh
Confidence            873   22222333222  244444555555543         34444333321 1222111111111122456789999


Q ss_pred             CcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcch-----hHHHHHH--------HhhhcccccccCcccccccc
Q 045926          205 CILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDE-----LTEERLQ--------ALTEDERKLYRCRAIKNCTA  271 (302)
Q Consensus       205 CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~-----~~~~rl~--------~~~~~~~~~~~C~~Cg~C~~  271 (302)
                      ||+||+|+.+|+..+       |..++-...|. .+.+..     ..++.+.        .+....+....|++||+|++
T Consensus       143 CI~C~RCVr~C~ev~-------g~~al~~~~RG-~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~~CG~Cv~  214 (819)
T PRK08493        143 CIVCERCVTVCKDKI-------GESALKTVPRG-LDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCGECIA  214 (819)
T ss_pred             cccccHHHhhCcccc-------cchhhhhccCC-cccccccccccccccchhhhhhcccceecccCCCcccccccCcHHH
Confidence            999999999999765       22222222111 110000     0000000        00000112468999999999


Q ss_pred             cCCCCCCHHH
Q 045926          272 TCPKGLDPAD  281 (302)
Q Consensus       272 vCP~gI~~~~  281 (302)
                      +||+|+-...
T Consensus       215 VCPvGAL~~k  224 (819)
T PRK08493        215 VCPVGALSSS  224 (819)
T ss_pred             hCCCCccccC
Confidence            9999997543

>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional

Probab=99.83  E-value=4.2e-22  Score=183.51  Aligned_cols=147  Identities=14%  Similarity=0.158  Sum_probs=100.3

Q ss_pred             ccceeEEEEEEecCCCCCCCCCceeEEEEec-CCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEECCE--Ee
Q 045926           55 VKKVMKEFRIYRWNPDRPDSKPFLQSYHVDL-SECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIGGT--NT  130 (302)
Q Consensus        55 ~~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~-~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~VnG~--~~  130 (302)
                      +.+-.++|+|+.              .+|++ ++ |+|||||++++| +++|+|||+.... .|.|+.|.|+|+|.  .+
T Consensus        64 ~~~~~~~I~IDG--------------k~VeV~~~-G~TILeAAr~~G-I~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv  127 (297)
T PTZ00305         64 EHKPRAIMFVNK--------------RPVEIIPQ-EENLLEVLEREG-IRVPKFCYHPILSVAGNCRMCLVQVDGTQNLV  127 (297)
T ss_pred             ccCCceEEEECC--------------EEEEecCC-CChHHHHHHHcC-CCcCccccCCCCCCCCccceeEEEECCCcCcc
Confidence            334468899988              55666 56 999999999998 5799999999874 79999999999996  56


Q ss_pred             ccccccccCC---CCCceEEccCCCchhhhhhhhccchhhh---------hccccccccccC-CCCCCCc-cccCChhHH
Q 045926          131 VACLKPIDGD---TSKPTIITPLPHMFVIKDLVVDLTNFYQ---------QYKSIEPWLKTN-MVPKDGR-EYRQSPADR  196 (302)
Q Consensus       131 laC~t~v~~~---~~~~~~Iepl~~~~vikDLvvD~~~~~~---------~~~~~~~~l~~~-~~~~~~~-e~~~s~~~~  196 (302)
                      .||.|+|.++   .|++.+|..+|  +.+-.|++..++..+         +||.+..++... .+++..+ .......++
T Consensus       128 ~AC~tpV~eGM~V~T~Se~v~~~R--k~vLElLLs~Hp~DC~~C~k~G~CeLQdla~~~Gv~~~Rf~~~~~~~~~~~~~p  205 (297)
T PTZ00305        128 VSCATVALPGMSIITDSRLVRDAR--EGNVELILINHPNDCPICEQATNCDLQNVSMNYGTDIPRYKEDKRAVQDFYFDP  205 (297)
T ss_pred             cccCCcCCCCCEEEeCCHHHHHHH--HHHHHHHHhcCCCcCCcccCcCCcHHHHHHHHhCCCCccCCcccccccccCCCC
Confidence            7999999983   23444444333  355556666665542         455554444222 2222111 111112234


Q ss_pred             hhccccccCcccCcccCCCCCcc
Q 045926          197 KKLDGLYECILCACCTTSCPSYW  219 (302)
Q Consensus       197 ~~~~~~~~CI~CG~C~~aCP~~~  219 (302)
                      ....++++||+||+|+.+|...+
T Consensus       206 ~i~~D~nKCIlCgRCVRaC~EVq  228 (297)
T PTZ00305        206 QTRVVLNRCIHCTRCVRFLNEHA  228 (297)
T ss_pred             ceeecCCcCcCccHHHHHHHHhh
Confidence            55677899999999999999876

>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]

Probab=99.80  E-value=1.2e-20  Score=192.47  Aligned_cols=189  Identities=14%  Similarity=0.282  Sum_probs=116.5

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEECC--EEeccccc
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIGG--TNTVACLK  135 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~VnG--~~~laC~t  135 (302)
                      |+||.|++              -+|++++ |.|||+|++++| ++||+|||+..|. .|.||.|+|+|+|  +++.||.|
T Consensus         1 m~tI~IDG--------------~ei~v~~-g~tvLqAa~~aG-i~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~t   64 (693)
T COG1034           1 MVTITIDG--------------KEIEVPE-GETVLQAAREAG-IDIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCAT   64 (693)
T ss_pred             CeEEEECC--------------EEEecCC-CcHHHHHHHHcC-CCCCcccccCCCCcccceeEEEEEecCCCcccccccc
Confidence            68899998              5566777 999999999999 5699999999987 5999999999999  88999999


Q ss_pred             cccCC---CCCceEEccCCCchhhhhhhhccchhhh---------hcccccccc-ccCCCCCCCccccCChhHH-hhccc
Q 045926          136 PIDGD---TSKPTIITPLPHMFVIKDLVVDLTNFYQ---------QYKSIEPWL-KTNMVPKDGREYRQSPADR-KKLDG  201 (302)
Q Consensus       136 ~v~~~---~~~~~~Iepl~~~~vikDLvvD~~~~~~---------~~~~~~~~l-~~~~~~~~~~e~~~s~~~~-~~~~~  201 (302)
                      ++.++   .+++..+.-.|  .-+-.+++..|++.+         .||++.--+ ...+++...+......+.. ....+
T Consensus        65 pv~dGM~I~T~s~~vk~~R--~~vmE~LLiNHPlDCpiCD~gGeCeLQD~a~~~G~~~sr~~~~kr~~~~~~~gp~v~~d  142 (693)
T COG1034          65 PVTDGMVISTNSEEVKKAR--EGVMEFLLINHPLDCPVCDKGGECELQDLAVKYGVSHSRYRETKRTHRDKDLGPLVKYD  142 (693)
T ss_pred             ccCCCeEEecCCHHHHHHH--HHHHHHHHhcCCCCCCccCCCCCchhHHHHHHhCCCcccccccccccccccccchhhcc
Confidence            99873   12222222222  123344455666654         444332111 1122222212211112222 23388


Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHH
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPAD  281 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~  281 (302)
                      +++||+|++|+++|-.+.       |-..    +.++.++...    .+....   +..+.=.+||+|+++||+|+-...
T Consensus       143 m~RCI~C~RCVR~c~eia-------G~~~----l~~~~rg~~~----~i~t~~---~~~l~se~cGncv~vCPvGALt~K  204 (693)
T COG1034         143 MNRCILCTRCVRFCKEIA-------GTHE----LGVIKRGENS----EIGTYL---DQPLESELCGNCVDVCPVGALTSK  204 (693)
T ss_pred             cccceechhhHHhhhhhc-------Cccc----cceeecCCCc----eeeccc---ccccccccccceeeeccccccccC
Confidence            999999999999998765       2111    1111221111    011111   122233899999999999997555


Q ss_pred             HH
Q 045926          282 AI  283 (302)
Q Consensus       282 ~I  283 (302)
                      -.
T Consensus       205 ~~  206 (693)
T COG1034         205 PF  206 (693)
T ss_pred             hH
Confidence            44

>PRK09130 NADH dehydrogenase subunit G; Validated

Probab=99.78  E-value=1.8e-20  Score=193.48  Aligned_cols=186  Identities=12%  Similarity=0.195  Sum_probs=117.5

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEECCE---Eecccc
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIGGT---NTVACL  134 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~VnG~---~~laC~  134 (302)
                      |++|+|+.              .+|++++ |+|||+|++++| +++|+|||+..-. .|.|+.|.|+|+|.   ++.||.
T Consensus         1 m~~~~Idg--------------~~v~v~~-g~til~a~~~~g-i~IP~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~   64 (687)
T PRK09130          1 MVKLKVDG--------------KEIEVPD-GYTLLQACEAAG-AEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCA   64 (687)
T ss_pred             CeEEEECC--------------EEEEeCC-CCHHHHHHHHcC-CCcCcccCCCCCCCCCCCCCCEEEECCCCCCcccccC
Confidence            58899988              4566667 999999999998 5699999999864 79999999999985   677999


Q ss_pred             ccccCC---CCCceEEccCCCchhhhhhhhccchhhh---------hccccccccc-cCCCCCCCcc-ccCChhHHhhcc
Q 045926          135 KPIDGD---TSKPTIITPLPHMFVIKDLVVDLTNFYQ---------QYKSIEPWLK-TNMVPKDGRE-YRQSPADRKKLD  200 (302)
Q Consensus       135 t~v~~~---~~~~~~Iepl~~~~vikDLvvD~~~~~~---------~~~~~~~~l~-~~~~~~~~~e-~~~s~~~~~~~~  200 (302)
                      |+|.++   .|++..|...|  ..+-.+++..|++.+         .+|++.-.+. ...++...+. .......+....
T Consensus        65 ~~v~~gm~v~T~s~~v~~~r--~~~le~ll~~Hp~dC~~C~~~g~C~Lq~~~~~~g~~~~r~~~~~~~~~~~~~~p~i~~  142 (687)
T PRK09130         65 MPVGEGMVIFTNTPMVKKAR--EGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDTSRYHENKRAVEDKYMGPLVKT  142 (687)
T ss_pred             CCCCCCCEEEeCCHHHHHHH--HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHhCCCCCCCCccccccCcCCCCCcEEE
Confidence            999983   23344444333  244555566666643         3444332222 1223322111 111111234567


Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHH
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPA  280 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~  280 (302)
                      ++++||+||+|+.+|-.++..       .++-.    ...+.+    .++...   .+....|..||+|+++||+|+-..
T Consensus       143 ~~~rCI~C~rCvr~c~ev~g~-------~~l~~----~~rg~~----~~i~~~---~~~~~~~~~~G~cv~~CPvgAl~~  204 (687)
T PRK09130        143 VMTRCIHCTRCVRFATEVAGV-------PELGA----IGRGED----MEITTY---LEQALTSELSGNVIDLCPVGALTS  204 (687)
T ss_pred             ecccCCcccHHHHHHHhhcCC-------ceEEe----eecCCC----CEEccC---CCCCccccccccHHhhCCCccccc
Confidence            889999999999999876521       11111    111111    011111   113456889999999999999643

>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated

Probab=99.77  E-value=2.8e-20  Score=169.04  Aligned_cols=188  Identities=17%  Similarity=0.248  Sum_probs=110.8

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccC-CCCCccCccEEEECCE--Eecccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRS-CREGICGSCAMNIGGT--NTVACL  134 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~-C~~g~CG~C~V~VnG~--~~laC~  134 (302)
                      .+|+|.|+.              ..|++.+ |.|||+|+++.| ..+|++|+..+ |..|.||.|.|+|||.  .++||.
T Consensus         2 ~~v~i~idg--------------~~~~~~~-g~til~a~~~~g-i~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~   65 (234)
T PRK07569          2 SVKTLTIDD--------------QLVSARE-GETLLEAAREAG-IPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACV   65 (234)
T ss_pred             ceEEEEECC--------------EEEEeCC-CCHHHHHHHHcC-CCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcC
Confidence            468888866              3355667 999999999998 56999999876 6789999999999996  457999


Q ss_pred             ccccCC---CCCceEEccCCCchhhhhhhhccchhhh---------hccccccccccC-CCCCC-CccccCChhHHhhcc
Q 045926          135 KPIDGD---TSKPTIITPLPHMFVIKDLVVDLTNFYQ---------QYKSIEPWLKTN-MVPKD-GREYRQSPADRKKLD  200 (302)
Q Consensus       135 t~v~~~---~~~~~~Iepl~~~~vikDLvvD~~~~~~---------~~~~~~~~l~~~-~~~~~-~~e~~~s~~~~~~~~  200 (302)
                      |+|.++   .+++..+...  ...+.+|+.+.+++.+         .++++.-++... ..++. ..+...+........
T Consensus        66 t~v~~Gm~v~t~~~~~~~~--rk~~l~~ll~~h~~~C~~C~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~d~s~~~i~~  143 (234)
T PRK07569         66 TPVAEGMVVQTNTPRLQEY--RRMIVELLFAEGNHVCAVCVANGNCELQDLAIEVGMDHVRFPYLFPRRPVDISHPRFGI  143 (234)
T ss_pred             CCCCCCCEEEECCHHHHHH--HHHHHHHHHHhccccCcccCCCCCcHHHHHHHHhCCCCcccCcccCCcccccCCCcEEe
Confidence            999973   1122222211  2345566666655532         344443332211 11110 001111112345566


Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHH-HhhhcccccccCcccccccccCCCCCC
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQ-ALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~-~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      +.++||.||+|+.+||.....       ..+    .  ..++...  .++. ...........|++||.|+.+||+|+-
T Consensus       144 d~~kCi~Cg~Cv~aC~~i~~~-------~~~----~--~~~~g~~--~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL  207 (234)
T PRK07569        144 DHNRCVLCTRCVRVCDEIEGA-------HTW----D--VAGRGAK--SRVITDLNQPWGTSETCTSCGKCVQACPTGAI  207 (234)
T ss_pred             ehhhCcCccHHHHHHHHhcCC-------cee----e--ecccCCc--ceEeecCCccccccccccchHHHHHhCCCCcE
Confidence            789999999999999953210       000    0  0000000  0000 000011023489999999999999885

>PRK07860 NADH dehydrogenase subunit G; Validated

Probab=99.76  E-value=7.2e-20  Score=192.03  Aligned_cols=188  Identities=13%  Similarity=0.177  Sum_probs=116.0

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccC-CCCCccCccEEEECCEE--ecccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRS-CREGICGSCAMNIGGTN--TVACL  134 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~-C~~g~CG~C~V~VnG~~--~laC~  134 (302)
                      .|++|+|+.              .+|++++ |+|||+|++.++ +++|+|||+.. +..|.|+.|.|+|||..  +.||.
T Consensus         3 ~~v~~~idg--------------~~~~~~~-g~til~aa~~~g-i~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~   66 (797)
T PRK07860          3 DLVTLTIDG--------------VEVSVPK-GTLVIRAAELLG-IQIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCT   66 (797)
T ss_pred             ceEEEEECC--------------EEEEeCC-CChHHHHHHHcC-CCCCeecCCCCCCCCcccCccEEEECCCcccccccC
Confidence            579999988              4556667 999999999998 57999999987 56899999999999964  56999


Q ss_pred             ccccCC---CCC--ceEEccCCCchhhhhhhhccchhhh---------hcccccccccc-CCCCCCCcc-ccCC-hhHHh
Q 045926          135 KPIDGD---TSK--PTIITPLPHMFVIKDLVVDLTNFYQ---------QYKSIEPWLKT-NMVPKDGRE-YRQS-PADRK  197 (302)
Q Consensus       135 t~v~~~---~~~--~~~Iepl~~~~vikDLvvD~~~~~~---------~~~~~~~~l~~-~~~~~~~~e-~~~s-~~~~~  197 (302)
                      |++.++   .|+  +.++.-.|  ..+-.|++..|++.+         ++|++.-.+.. ..++...+. .... .....
T Consensus        67 t~v~~gm~V~t~~~s~~v~~~r--~~~le~ll~~hp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  144 (797)
T PRK07860         67 TTVTDGMVVKTQLTSPVADKAQ--HGVMELLLINHPLDCPVCDKGGECPLQNQAMSNGRAESRFTDVKRTFPKPINISTQ  144 (797)
T ss_pred             CCCCCCcEEEeCCCCHHHHHHH--HHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHHhCCCCccCccccccCCCCCCCCcc
Confidence            999973   111  22222222  344555555555543         44444322211 122211111 1100 11234


Q ss_pred             hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      +..+.++||+|++|+.+|-.++..       .++-.    ...+.+.    ++...   .+..+.|.+||+|+++||+|+
T Consensus       145 i~~d~~rCI~C~rCvr~c~ev~g~-------~~l~~----~~rg~~~----~i~~~---~~~~~~~~~cG~cv~vCP~GA  206 (797)
T PRK07860        145 VLLDRERCVLCARCTRFSDQIAGD-------PFIDL----QERGALQ----QVGIY---EGEPFQSYFSGNTVQICPVGA  206 (797)
T ss_pred             eeecccccccCcHHHHHHHhhcCC-------cEEEe----eecCCCC----EEecC---CCCCcCccccCCchhhCCccc
Confidence            667899999999999999876521       11111    1111110    11111   113457899999999999999


Q ss_pred             CHHH
Q 045926          278 DPAD  281 (302)
Q Consensus       278 ~~~~  281 (302)
                      -...
T Consensus       207 l~~k  210 (797)
T PRK07860        207 LTGA  210 (797)
T ss_pred             cccc
Confidence            6543

>PRK09129 NADH dehydrogenase subunit G; Validated

Probab=99.75  E-value=1.1e-19  Score=190.20  Aligned_cols=187  Identities=16%  Similarity=0.212  Sum_probs=116.4

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEECCEE--eccccc
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIGGTN--TVACLK  135 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~VnG~~--~laC~t  135 (302)
                      |++|+|+.            ++  |++.+ |+|||+|+++++ +++|+|||+.... .|.|+.|.|+|||..  +.||.|
T Consensus         1 m~~~~idg------------~~--~~~~~-g~~il~a~~~~g-~~ip~~c~~~~~~~~~~C~~C~v~v~~~~~~~~aC~~   64 (776)
T PRK09129          1 MVEIEIDG------------KK--VEVPE-GSMVIEAADKAG-IYIPRFCYHKKLSIAANCRMCLVEVEKAPKPLPACAT   64 (776)
T ss_pred             CeEEEECC------------EE--EEeCC-CCHHHHHHHHcC-CCCCcccCCCCCCCCCCcceeEEEECCCCCcCcccCC
Confidence            58899988            44  45556 999999999998 5699999998754 799999999999964  679999


Q ss_pred             cccCC---CCCceEEccCCCchhhhhhhhccchhh---------hhcccccccccc-CCCCCCCcc-ccCChhHHhhccc
Q 045926          136 PIDGD---TSKPTIITPLPHMFVIKDLVVDLTNFY---------QQYKSIEPWLKT-NMVPKDGRE-YRQSPADRKKLDG  201 (302)
Q Consensus       136 ~v~~~---~~~~~~Iepl~~~~vikDLvvD~~~~~---------~~~~~~~~~l~~-~~~~~~~~e-~~~s~~~~~~~~~  201 (302)
                      ++.++   .|++..+.-.|  ..+-.|++..|+..         ++++++.-.+.. ..++...+. +........+..+
T Consensus        65 ~~~~gm~v~t~~~~~~~~r--~~~l~~ll~~h~~~C~~c~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~~~~~p~i~~d  142 (776)
T PRK09129         65 PVTDGMKVFTRSEKALKAQ--KSVMEFLLINHPLDCPICDQGGECQLQDLAVGYGRSTSRYTEEKRVVFDKDLGPLISTE  142 (776)
T ss_pred             CCCCCCEEEcCCHHHHHHH--HHHHHHHHhcCCCCcccCCCCCCCHHHHHHHHhCCCCCccccccccCCccCCCcceeec
Confidence            99973   22222333222  23444555555543         355555433322 222221111 1112223456678


Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHH
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPAD  281 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~  281 (302)
                      .++||+||+|+.+|-.++       |..++-...|    +.+    .++....   +....|..||+|+++||+|+-...
T Consensus       143 ~~rCi~C~rCvr~c~ev~-------g~~~l~~~~r----g~~----~~i~~~~---~~~~~~~~cg~cv~~CP~GAl~~k  204 (776)
T PRK09129        143 MTRCIHCTRCVRFGQEIA-------GVMELGMMGR----GEH----SEITTYV---GKTVDSELSGNMIDLCPVGALTSK  204 (776)
T ss_pred             ccccccCcHHHHHHHHhc-------CCceeeeecc----CCC----CEEcCCC---CCCccCcccCCchhhCCccccccc
Confidence            999999999999998765       2112211111    111    1111111   134468899999999999996544

>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G

Probab=99.75  E-value=1.3e-19  Score=185.00  Aligned_cols=179  Identities=13%  Similarity=0.187  Sum_probs=111.5

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEECCE---EeccccccccCC---CCCceEEccCCCc
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIGGT---NTVACLKPIDGD---TSKPTIITPLPHM  153 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~VnG~---~~laC~t~v~~~---~~~~~~Iepl~~~  153 (302)
                      .+|++++ |+|||+|+++.+ +++|+|||+..-. .|.|+.|.|+|+|.   .+.||.|+|.++   .|++..|.-.|  
T Consensus         6 ~~~~~~~-g~~il~a~~~~g-i~ip~~C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~~gm~v~t~~~~~~~~r--   81 (603)
T TIGR01973         6 KELEVPK-GTTVLQACLSAG-IEIPRFCYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVTDGMKISTNSEKVKKAR--   81 (603)
T ss_pred             EEEEeCC-CCHHHHHHHHcC-CCccccCCCCCCCCCCccccCEEEECCCCCCcccccCCCCCCCCEEEeCCHHHHHHH--
Confidence            4566667 999999999998 5799999999864 79999999999995   678999999983   22333333332  


Q ss_pred             hhhhhhhhccchhhh---------hccccccccc-cCCCCCCC-ccccCChhHHhhccccccCcccCcccCCCCCcccCC
Q 045926          154 FVIKDLVVDLTNFYQ---------QYKSIEPWLK-TNMVPKDG-REYRQSPADRKKLDGLYECILCACCTTSCPSYWWNP  222 (302)
Q Consensus       154 ~vikDLvvD~~~~~~---------~~~~~~~~l~-~~~~~~~~-~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~  222 (302)
                      ..+-+|++..|+..+         +++++.-.+. ...+++.. +.+......+.+..+.++||+||+|+++|-.++.  
T Consensus        82 ~~~~e~ll~~h~~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~c~e~~g--  159 (603)
T TIGR01973        82 EGVMEFLLINHPLDCPICDQGGECDLQDQAVMYGSDRSRFREKKRTVENKYLGPLIKTEMTRCIHCTRCVRFANEVAG--  159 (603)
T ss_pred             HHHHHHHHhcCCCCCCcCCCCCCChHHHHHHHhCCCCCCCCcccccCCCCCCCCCeEecCCcCccccHHHHHHHHhhC--
Confidence            244555565666543         4444432221 12222211 1111222234567899999999999999976552  


Q ss_pred             CCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHH
Q 045926          223 EEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPAD  281 (302)
Q Consensus       223 ~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~  281 (302)
                           ..++    .+...+.+    .++...   .+..+.|.+||+|+++||+|+-...
T Consensus       160 -----~~~l----~~~~rg~~----~~i~~~---~~~~~~~~~cg~cv~vCP~GAl~~k  202 (603)
T TIGR01973       160 -----VEDL----GVIGRGNN----VEIGTY---EGKTLESELSGNLIDICPVGALTSK  202 (603)
T ss_pred             -----CceE----EEeccCCC----CEEecC---CCCCCCCcccCChHhhCCccccccc
Confidence                 1111    11111111    011111   1134578999999999999996433

This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.

>PRK08166 NADH dehydrogenase subunit G; Validated

Probab=99.67  E-value=2.4e-17  Score=174.28  Aligned_cols=185  Identities=13%  Similarity=0.171  Sum_probs=113.6

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEE-----CC--EEe
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNI-----GG--TNT  130 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~V-----nG--~~~  130 (302)
                      |++|+|+.            ++  +++.+ |+|||+|++..| ..+|++|++.... .|.|+.|.|+|     +|  +.+
T Consensus         1 ~~~i~idg------------~~--~~~~~-g~til~a~~~~g-i~ip~~C~~~~~~~~G~C~~C~v~v~~g~~~~~~~~~   64 (847)
T PRK08166          1 MATIHVDG------------KE--YEVNG-ADNLLEACLSLG-IDIPYFCWHPALGSVGACRQCAVKQYQNPEDTRGRLV   64 (847)
T ss_pred             CeEEEECC------------EE--EEeCC-CCHHHHHHHHcC-CCCCccccCCCCCCCCccCCCeEEEeecCccCCCCcc
Confidence            57888876            33  44556 999999999998 5699999988754 79999999999     33  467


Q ss_pred             ccccccccCCCCCceEEccCC-----Cchhhhhhhhccchhhh---------hcccccccccc-CCCCCCCc-cccCChh
Q 045926          131 VACLKPIDGDTSKPTIITPLP-----HMFVIKDLVVDLTNFYQ---------QYKSIEPWLKT-NMVPKDGR-EYRQSPA  194 (302)
Q Consensus       131 laC~t~v~~~~~~~~~Iepl~-----~~~vikDLvvD~~~~~~---------~~~~~~~~l~~-~~~~~~~~-e~~~s~~  194 (302)
                      +||+|++.++    +.|+--+     ....+.+|++..|+..+         .+|++.-++.. ..++...+ .+..+..
T Consensus        65 ~aC~~~v~~g----m~v~t~~~~~~~~r~~~~e~ll~~hp~dc~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~  140 (847)
T PRK08166         65 MSCMTPATDG----TFISIDDPEAKAFRASVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDL  140 (847)
T ss_pred             cCcCCCCCCC----CEEEeCCHHHHHHHHHHHHHHHhcCCCCCCccCCCCCchHHHHHHHhCCCCccCCCcCccccccCC
Confidence            8999999872    3333221     12244555555555543         44544333321 22222111 1111122


Q ss_pred             HHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCC
Q 045926          195 DRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCP  274 (302)
Q Consensus       195 ~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP  274 (302)
                      .+.+..++++||+||+|+.+|..++..  ..+|-           .++...  ..   +....+....|.+||+|+++||
T Consensus       141 ~~~i~~d~~rCi~C~rCVr~c~e~~g~--~~l~~-----------~~~~~~--~~---~~~~~~~~~~~~~~G~cv~vCP  202 (847)
T PRK08166        141 GPFISHEMNRCIACYRCVRYYKDYAGG--TDLGV-----------YGAHDN--VY---FGRPEDGTLESEFSGNLVEVCP  202 (847)
T ss_pred             CCceEecCCcCccccHHHHHHHhhcCc--ceEEE-----------eecCce--eE---ecCCCCCcccChhhCChHhhCC
Confidence            345678999999999999999876521  11211           011110  00   1100113457899999999999


Q ss_pred             CCCCHHH
Q 045926          275 KGLDPAD  281 (302)
Q Consensus       275 ~gI~~~~  281 (302)
                      +|+-...
T Consensus       203 ~GAl~~k  209 (847)
T PRK08166        203 TGVFTDK  209 (847)
T ss_pred             chhcccc
Confidence            9996544

>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional

Probab=99.39  E-value=5e-13  Score=130.25  Aligned_cols=98  Identities=23%  Similarity=0.476  Sum_probs=76.8

Q ss_pred             ccCChhHHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCccccc
Q 045926          189 YRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKN  268 (302)
Q Consensus       189 ~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~  268 (302)
                      ..+++++....+.+..||+||.|..+||+|...+.++.+|++.+..++.+.+++...  .   ..  . +.+|.|++||+
T Consensus         9 ~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~~~~~~~~~~p~g~~~~~~~~~~~~~~~--~---~~--~-~~~~~C~~C~~   80 (407)
T PRK11274          9 IRDTPEGEEAEAILRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGAEVT--E---KT--Q-LHLDRCLTCRN   80 (407)
T ss_pred             ccCChhhhHhHHHHHhCccCCCccccCCcccccCCcccChhHHHHHHHHHhccCccc--h---hh--c-cccccCccccc
Confidence            345555556667788999999999999999987778999999888777766554211  0   11  1 26899999999


Q ss_pred             ccccCCCCCCHHHHHHHHHHHHhhcC
Q 045926          269 CTATCPKGLDPADAIHKMKTKHMLSQ  294 (302)
Q Consensus       269 C~~vCP~gI~~~~~I~~lR~~l~~~~  294 (302)
                      |+.+||.+|++.++|..+|..+.+++
T Consensus        81 C~~~CP~~v~~~~li~~~r~~~~~~~  106 (407)
T PRK11274         81 CETTCPSGVQYGRLLDIGRKVVEEKV  106 (407)
T ss_pred             hhhhCCCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999998776543

>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]

Probab=99.34  E-value=1.1e-12  Score=114.44  Aligned_cols=83  Identities=27%  Similarity=0.546  Sum_probs=65.9

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHH
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPA  280 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~  280 (302)
                      .+..|++||.|+++||+...   ..++|+-+++..+...  +|       ..+. .. .+|.|++|+.|...||.++++.
T Consensus        37 ~l~~C~QCG~CT~sCPs~r~---t~y~pR~ii~~~~~g~--~d-------~il~-~~-~lW~C~tCytC~eRCPr~v~i~  102 (195)
T COG1150          37 YLEGCYQCGTCTGSCPSGRF---TDYSPRKIIRKARLGL--VD-------LILS-SE-SLWACVTCYTCTERCPRGVKIV  102 (195)
T ss_pred             hHhHhhccCcccCCCCCccc---CCCCHHHHHHHHHccc--HH-------HHhc-CC-cceeeeechhhhhhCCCCCCHH
Confidence            45669999999999999875   2468998877665421  11       1122 22 7999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCcc
Q 045926          281 DAIHKMKTKHMLSQPME  297 (302)
Q Consensus       281 ~~I~~lR~~l~~~~~~~  297 (302)
                      ++|+.+|+.+++.|..+
T Consensus       103 ~vv~~lR~~a~k~G~~~  119 (195)
T COG1150         103 EVVKALRNIAVKEGLIE  119 (195)
T ss_pred             HHHHHHHHHHHHhcccc
Confidence            99999999999998854

>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.29  E-value=4.4e-12  Score=97.26  Aligned_cols=66  Identities=26%  Similarity=0.485  Sum_probs=49.0

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccc----cC-CCCCccCccEEEECCEE-ec
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYR----RS-CREGICGSCAMNIGGTN-TV  131 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~----~~-C~~g~CG~C~V~VnG~~-~l  131 (302)
                      ++|+|.|+.            ++|++  .+ |.|||+||.+++ +++|++|+.    .. |..|.|+.|.|+|||+. ++
T Consensus         2 ~~v~i~idG------------~~v~~--~~-G~til~al~~~g-i~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~   65 (82)
T PF13510_consen    2 KMVTITIDG------------KPVEV--PP-GETILEALLAAG-IDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVR   65 (82)
T ss_dssp             EEEEEEETT------------EEEEE--EE-T-BHHHHHHHTT---B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEE
T ss_pred             CEEEEEECC------------EEEEE--cC-CCHHHHHHHHCC-CeEEEeeeccCcccccCCccccceEEEEECCCcceE
Confidence            578898888            44555  46 999999999998 569999997    44 88999999999999987 89


Q ss_pred             cccccccC
Q 045926          132 ACLKPIDG  139 (302)
Q Consensus       132 aC~t~v~~  139 (302)
                      ||.|++.+
T Consensus        66 AC~t~v~~   73 (82)
T PF13510_consen   66 ACSTPVED   73 (82)
T ss_dssp             TTT-B--T
T ss_pred             cccCCCcC
Confidence            99999987

>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C

Probab=99.28  E-value=6.1e-12  Score=106.19  Aligned_cols=79  Identities=20%  Similarity=0.424  Sum_probs=56.6

Q ss_pred             ccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHH
Q 045926          203 YECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADA  282 (302)
Q Consensus       203 ~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~  282 (302)
                      ..||+||.|.++||++...   .+.|+.+.+..   .++..      ...+. . +.+|.|++||.|..+||++|++.++
T Consensus         2 ~~Ci~CG~C~~~CP~~~~~---~~~~~~~~~~~---~~g~~------~~~~~-~-~~~~~C~~Cg~C~~~CP~~i~~~~~   67 (144)
T TIGR03290         2 KACYQCGTCTGSCPSGRRT---SYRTRLIIRKA---LLGLK------DEVIS-D-DDLWMCTTCYTCQERCPRDVKITDI   67 (144)
T ss_pred             ccccCCCCCcCcCCCcccc---CCCHHHHHHHH---Hccch------hhhcc-C-CCCCcCcCcCchhhhcCCCCCHHHH
Confidence            5799999999999997531   23455443332   22211      01122 2 2789999999999999999999999


Q ss_pred             HHHHHHHHhhcCC
Q 045926          283 IHKMKTKHMLSQP  295 (302)
Q Consensus       283 I~~lR~~l~~~~~  295 (302)
                      |..+|+.+..++.
T Consensus        68 i~~~R~~~~~~g~   80 (144)
T TIGR03290        68 IKALRNLAAKKGF   80 (144)
T ss_pred             HHHHHHHHHHcCC
Confidence            9999988877654

The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.

>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]

Probab=99.26  E-value=2.9e-12  Score=123.26  Aligned_cols=84  Identities=25%  Similarity=0.520  Sum_probs=64.2

Q ss_pred             hccccccCcccCcccCCCCCccc-----CCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCccccccccc
Q 045926          198 KLDGLYECILCACCTTSCPSYWW-----NPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTAT  272 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~-----~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~v  272 (302)
                      .+.....||+||+|..+||+|+.     ..+-|.||.+.+...  +..+.+           ...+..+.|+.||.|.++
T Consensus       303 ~~re~L~CIRCGaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~--~~~g~~-----------~~~~~~~~c~lcg~C~ev  369 (459)
T COG1139         303 EFREALRCIRCGACLNHCPVYRHIGGHAYGSIYPGPIGVVWSP--ILGGYD-----------AAGDLPYACSLCGACTEV  369 (459)
T ss_pred             HHHHHHHhhcchHhhhcChhhhhccCeecccccCCcccceecc--hhcchh-----------hccccchhhccccCCCCc
Confidence            34567789999999999999984     345788887654332  122211           112267899999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhhcC
Q 045926          273 CPKGLDPADAIHKMKTKHMLSQ  294 (302)
Q Consensus       273 CP~gI~~~~~I~~lR~~l~~~~  294 (302)
                      ||+.|++.++|.++|+...+++
T Consensus       370 CPv~Ipl~eli~~lR~~~~~~~  391 (459)
T COG1139         370 CPVKIPLPELIRKLRRVAAESG  391 (459)
T ss_pred             CCCCCCHHHHHHHHHHHHhhcC
Confidence            9999999999999999888763

>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit

Probab=99.24  E-value=2.2e-11  Score=102.90  Aligned_cols=75  Identities=16%  Similarity=0.363  Sum_probs=63.2

Q ss_pred             EEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEECCEEecccccccc
Q 045926           60 KEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPID  138 (302)
Q Consensus        60 ~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~  138 (302)
                      ++|+|+.            +.+++++++ +++|||+|++ ++     -.+.+.+|..|.||+|+|.|||+++.||.+++.
T Consensus         2 i~~~vNG------------~~~~~~~~~-~~~Ll~~LR~~lg-----ltg~K~gC~~G~CGACtVlvdg~~v~SCl~~~~   63 (148)
T TIGR03193         2 LRLTVNG------------RWREDAVAD-NMLLVDYLRDTVG-----LTGTKQGCDGGECGACTVLVDGRPRLACSTLAH   63 (148)
T ss_pred             EEEEECC------------EEEEeecCC-CCcHHHHHHHhcC-----CCCCCCCCCCCCCCCCEEEECCeEeeccHhhHh
Confidence            5788887            567888887 8999999997 33     346889999999999999999999999999998


Q ss_pred             CCCC-CceEEccCCC
Q 045926          139 GDTS-KPTIITPLPH  152 (302)
Q Consensus       139 ~~~~-~~~~Iepl~~  152 (302)
                      ...| +..|||+|..
T Consensus        64 ~~~G~~V~TiEgl~~   78 (148)
T TIGR03193        64 RVAGRKVETVEGLAT   78 (148)
T ss_pred             hcCCCcEEEeCCCCC
Confidence            7655 4679998863

4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.

>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional

Probab=99.21  E-value=3.6e-11  Score=102.70  Aligned_cols=77  Identities=19%  Similarity=0.362  Sum_probs=64.8

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI  137 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v  137 (302)
                      ..++|+|++            +.+++++++ +++|||+|++.+.     .+.+.+|..|.||+|+|.|||+++.||.+++
T Consensus         7 ~~i~~~vNG------------~~~~~~~~~-~~~Ll~~LR~~gl-----tgtK~GC~~G~CGACtVlvdg~~v~SCl~~a   68 (159)
T PRK09908          7 ITIECTING------------MPFQLHAAP-GTPLSELLREQGL-----LSVKQGCCVGECGACTVLVDGTAIDSCLYLA   68 (159)
T ss_pred             eeEEEEECC------------EEEEEecCC-CCcHHHHHHHcCC-----CCCCCCcCCCCCCCcEEEECCcEeehhHhhH
Confidence            358899998            668898887 8999999997532     3578899999999999999999999999999


Q ss_pred             cCCCC-CceEEccCCC
Q 045926          138 DGDTS-KPTIITPLPH  152 (302)
Q Consensus       138 ~~~~~-~~~~Iepl~~  152 (302)
                      ....+ +..|||.|..
T Consensus        69 ~~~~G~~V~TiEGl~~   84 (159)
T PRK09908         69 AWAEGKEIRTLEGEAK   84 (159)
T ss_pred             HHhCCCEEEeecCCCC
Confidence            87655 4568998763

>TIGR00273 iron-sulfur cluster-binding protein

Probab=99.17  E-value=2.8e-11  Score=119.06  Aligned_cols=84  Identities=18%  Similarity=0.435  Sum_probs=64.0

Q ss_pred             ccccccCcccCcccCCCCCcccC-----CCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccC
Q 045926          199 LDGLYECILCACCTTSCPSYWWN-----PEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATC  273 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~-----~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vC  273 (302)
                      +.++.+||+||.|..+||+|...     ...|.||++.+...  +.++..        ..   .+..+.|+.||.|+.+|
T Consensus       289 ~~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~--~~~g~~--------~~---~~~~~~C~~Cg~C~~vC  355 (432)
T TIGR00273       289 FREVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVWSP--LLGGYT--------DY---KHLPYLSSLCGACREVC  355 (432)
T ss_pred             hhhHhhCCCCCCccccCcchhccCccccccccCChHHHHHHH--Hhcccc--------cc---cccCccchhhhhhhccC
Confidence            66788999999999999999743     23588898765422  122210        01   11468999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhhcCC
Q 045926          274 PKGLDPADAIHKMKTKHMLSQP  295 (302)
Q Consensus       274 P~gI~~~~~I~~lR~~l~~~~~  295 (302)
                      |++|++.++|..+|+.+.+.+.
T Consensus       356 P~gI~~~~li~~~R~~~~~~g~  377 (432)
T TIGR00273       356 PVKIPLPELIREHRSDKVEKGR  377 (432)
T ss_pred             CCCCcHHHHHHHHHHHHHhcCC
Confidence            9999999999999999987654

Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.

>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]

Probab=99.16  E-value=6.2e-11  Score=100.41  Aligned_cols=77  Identities=19%  Similarity=0.417  Sum_probs=65.3

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEECCEEecccccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKP  136 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~  136 (302)
                      .+++|+|++            +.+++++++ +++|||+|++ ++-     -..+.+|..|.||+|+|.|||+.+.||.++
T Consensus         2 ~~i~ltvNG------------~~~~~~~~p-~~~Ll~~LRd~l~l-----tgtk~GC~~g~CGACtVlvDG~~v~SCl~~   63 (156)
T COG2080           2 MPITLTVNG------------EPVELDVDP-RTPLLDVLRDELGL-----TGTKKGCGHGQCGACTVLVDGEAVNSCLTL   63 (156)
T ss_pred             CcEEEEECC------------eEEEEEeCC-CChHHHHHHHhcCC-----CCcCCCCCCccCCceEEEECCeEehHHHHH
Confidence            468999999            679999998 8999999995 442     246778999999999999999999999999


Q ss_pred             ccCCCC-CceEEccCCC
Q 045926          137 IDGDTS-KPTIITPLPH  152 (302)
Q Consensus       137 v~~~~~-~~~~Iepl~~  152 (302)
                      +....| +..|||.|..
T Consensus        64 a~~~~G~~ItTiEGl~~   80 (156)
T COG2080          64 AVQAEGAEITTIEGLAK   80 (156)
T ss_pred             HHHhCCCeEEEeecccC
Confidence            987655 5668998863

>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional

Probab=99.13  E-value=6.2e-11  Score=115.05  Aligned_cols=82  Identities=30%  Similarity=0.592  Sum_probs=61.0

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHH-HHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCH
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAAL-LHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDP  279 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l-~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~  279 (302)
                      .+..||+||.|.++||+|..+ +.|.||..+ ....++..+.     .+   ..  .. .++.|+.||.|..+||.+|++
T Consensus         5 ~~~~Ci~Cg~C~~~CP~~~~~-~~~~g~~~~~~~~~~~~~~~-----~~---~~--~~-~~~~C~~C~~C~~~CP~~i~~   72 (396)
T PRK11168          5 SFDSCIKCTVCTTACPVARVN-PLYPGPKQAGPDGERLRLKD-----GA---LY--DE-SLKYCSNCKRCEVACPSGVKI   72 (396)
T ss_pred             chhhcCCCCCCCccCCCcccC-CCCCChhhhccHHHHHhccc-----hh---hc--CC-CCCcCcCcCccCcccCCCCCH
Confidence            467899999999999999864 347777655 2333332111     00   11  22 789999999999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 045926          280 ADAIHKMKTKHMLSQ  294 (302)
Q Consensus       280 ~~~I~~lR~~l~~~~  294 (302)
                      .++|..+|..+.+.+
T Consensus        73 ~~~i~~~r~~~~~~~   87 (396)
T PRK11168         73 GDIIQRARAKYVTER   87 (396)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887654

>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional

Probab=99.11  E-value=2.8e-10  Score=101.65  Aligned_cols=78  Identities=21%  Similarity=0.384  Sum_probs=63.2

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI  137 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v  137 (302)
                      ..++|+|+.            +.+.+++++ ++||||+|++-..    -...+.+|++|.||+|+|.|||+++.||.+++
T Consensus        50 ~~i~~~VNG------------~~~~~~v~~-~~tLLd~LR~~l~----ltGtK~GC~~G~CGACTVlVdG~~v~SCl~la  112 (217)
T PRK11433         50 SPVTLKVNG------------KTEQLEVDT-RTTLLDALREHLH----LTGTKKGCDHGQCGACTVLVNGRRLNACLTLA  112 (217)
T ss_pred             ceEEEEECC------------EEEEEecCC-CCcHHHHHHHhcC----CCCCCCCCCCCCcCceEEEECCEEeeeeeeeh
Confidence            458888888            668888888 8999999997321    12456789999999999999999999999999


Q ss_pred             cCCCC-CceEEccCCC
Q 045926          138 DGDTS-KPTIITPLPH  152 (302)
Q Consensus       138 ~~~~~-~~~~Iepl~~  152 (302)
                      ....+ +..|||.|..
T Consensus       113 ~~~~G~~ItTiEGL~~  128 (217)
T PRK11433        113 VMHQGAEITTIEGLGS  128 (217)
T ss_pred             hhcCCCEEEEeCCcCC
Confidence            66544 4678998864

>TIGR03198 pucE xanthine dehydrogenase E subunit

Probab=99.05  E-value=4e-10  Score=95.79  Aligned_cols=75  Identities=25%  Similarity=0.402  Sum_probs=62.3

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI  137 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v  137 (302)
                      .++|+|++            +.+++++.+ ++++|++|+. ++.     -..+.+|..|.||+|+|.|||+++.||.+++
T Consensus         3 ~i~f~vNG------------~~~~~~~~~-~~~Ll~~LR~~~~l-----tgtK~gC~~G~CGACtVlvdG~~v~SCl~~~   64 (151)
T TIGR03198         3 QFRFTVNG------------QAWEVAAVP-TTRLSDLLRKELQL-----TGTKVSCGIGRCGACSVLIDGKLANACLTMA   64 (151)
T ss_pred             cEEEEECC------------EEEEeecCC-CcHHHHHHHhccCC-----CCCCCCCCCCcCCccEEEECCcEEechHHHH
Confidence            47888888            668888877 8999999997 342     3567789999999999999999999999999


Q ss_pred             cCCCC-CceEEccCC
Q 045926          138 DGDTS-KPTIITPLP  151 (302)
Q Consensus       138 ~~~~~-~~~~Iepl~  151 (302)
                      ....+ +..|||.|.
T Consensus        65 ~~~~G~~v~TiEgl~   79 (151)
T TIGR03198        65 YQADGHEITTIEGIA   79 (151)
T ss_pred             HHhcCCEEEecCCcC
Confidence            87655 456899874

This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.04  E-value=1.3e-09  Score=112.61  Aligned_cols=66  Identities=23%  Similarity=0.356  Sum_probs=56.3

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccC-CCCCccCccEEEECCEE--ecccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRS-CREGICGSCAMNIGGTN--TVACL  134 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~-C~~g~CG~C~V~VnG~~--~laC~  134 (302)
                      .+++|+|+.              .++++.+ |+|||+||+..| .++|+||++.. |..|.|+.|.|+|||..  ++||+
T Consensus         2 ~~v~~~idg--------------~~~~~~~-g~ti~~a~~~~g-~~ip~~c~~~~~~~~g~C~~C~V~v~g~~~~~~aC~   65 (652)
T PRK12814          2 NTISLTING--------------RSVTAAP-GTSILEAAASAG-ITIPTLCFHQELEATGSCWMCIVEIKGKNRFVPACS   65 (652)
T ss_pred             CeEEEEECC--------------EEEEeCC-cCcHHHHHHHcC-CccccccCCCCCCCccccceeEEEECCCcceecCcC
Confidence            368888888              3455556 999999999998 57999999865 78999999999999964  78999


Q ss_pred             ccccC
Q 045926          135 KPIDG  139 (302)
Q Consensus       135 t~v~~  139 (302)
                      |++.+
T Consensus        66 t~~~~   70 (652)
T PRK12814         66 TAVSE   70 (652)
T ss_pred             CCCCC
Confidence            99987

>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit

Probab=98.94  E-value=8.4e-10  Score=107.39  Aligned_cols=81  Identities=28%  Similarity=0.523  Sum_probs=57.3

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhh--cccccccCcccccccccCCCCCC
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTE--DERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~--~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      .+..||+||.|.++||+|..+ +.|.||.....        +    ..++.....  -.+.++.|+.||.|..+||.+|+
T Consensus         3 ~~~~Ci~Cg~C~~~Cp~~~~~-~~~~g~~~~~~--------~----~~~~~l~~~~~~~~~~~~C~~C~~C~~~CP~~i~   69 (397)
T TIGR03379         3 SFESCIKCTVCTVYCPVAKAN-PLYPGPKQAGP--------D----GERLRLKSAELYDEALKYCTNCKRCEVACPSDVK   69 (397)
T ss_pred             chhhCCCCCCCcccCcCcccc-CCccCcccCCc--------H----HHHHhcccchhcccccccCcCcCccchhcCCCCC
Confidence            356899999999999999864 34666543100        0    001110000  01268999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 045926          279 PADAIHKMKTKHMLSQ  294 (302)
Q Consensus       279 ~~~~I~~lR~~l~~~~  294 (302)
                      +.++|.++|..+.+.+
T Consensus        70 ~~~~i~~~R~~~~~~~   85 (397)
T TIGR03379        70 IGDIIARARNKYQKKK   85 (397)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999887654

Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.

>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]

Probab=98.89  E-value=1.3e-09  Score=104.95  Aligned_cols=86  Identities=29%  Similarity=0.566  Sum_probs=67.0

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCH
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDP  279 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~  279 (302)
                      ..+.+|++||.|.++||++...  +.++|+..+...+.....+... .+   ...   +.+|.|+.|++|+..||.+|++
T Consensus         6 ~~~~~Cv~Cg~C~~~CP~~~~~--~~~sPrgr~~~~r~~~~~~~~~-~~---~~~---~~~~~C~~C~~C~~~CP~~i~~   76 (388)
T COG0247           6 ESLDKCVHCGFCTNVCPSYRAT--EALSPRGRIVLVREVLRGKAPG-DE---EVY---EALDTCLACGACATACPSGIDI   76 (388)
T ss_pred             HHHHhcCCCCcccCcCCCcccc--CCCCCchHHHHHHHHHhCCCcc-hh---hhH---HHHHhCcCccchHhhCCCCCcH
Confidence            4467899999999999999864  6788988877776655433210 11   111   1679999999999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 045926          280 ADAIHKMKTKHMLSQ  294 (302)
Q Consensus       280 ~~~I~~lR~~l~~~~  294 (302)
                      .+++..+|+...+..
T Consensus        77 ~~~~~~~r~~~~~~~   91 (388)
T COG0247          77 GDLIREARRKLAKGL   91 (388)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999888764

>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N

Probab=98.87  E-value=3.9e-10  Score=79.82  Aligned_cols=57  Identities=33%  Similarity=0.813  Sum_probs=26.4

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ++++||+||.|+++||++..            .. .+....++...    ..+.+   ..|.|+.||+|+.+||+||
T Consensus         1 d~~~Ci~Cg~C~~~CP~~~~------------~~-~~~~~~~~~~~----~~~~~---~~~~C~~C~~C~~~CP~~I   57 (57)
T PF13183_consen    1 DLSKCIRCGACTSVCPVYRN------------TG-RFSHPPRDRRS----AVLRE---EAWSCTTCGACSEVCPVGI   57 (57)
T ss_dssp             HHHC--S-SHHHHCSHHHHH------------HH-HHHTSTTS--H----HHHHH---HHGG-----HHHHH-TT--
T ss_pred             CHHHccCccChHHHChhhhc------------cc-ccccCcchhHH----Hhhcc---cccCCcCcCCccCcCcccc
Confidence            35789999999999996541            11 22233333211    11111   3499999999999999987

...

>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B

Probab=98.79  E-value=1.2e-09  Score=78.50  Aligned_cols=61  Identities=31%  Similarity=0.707  Sum_probs=32.4

Q ss_pred             cCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          204 ECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       204 ~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      +|++||.|+.+||++..++.   .|..++..+...  ..+        .+.+.. .++.|+.||.|..+||.|||
T Consensus         1 ~C~~Cg~C~~~CP~~~~~~~---~~~~~~~~~~~~--~~~--------~~~~~~-~~~~C~~Cg~C~~~CP~~l~   61 (61)
T PF13534_consen    1 ACTQCGYCVPACPSYIATPD---EPRSPMRAIYLG--KID--------EISESH-AASLCIGCGLCESVCPQGLD   61 (61)
T ss_dssp             T----STTGGGSHHHHHCTT---THHHHHHHHHHC--HCH--------TTHHHT-TTTT--S--HHHHH-TT---
T ss_pred             CCCCCCcCcccCCCccccCc---cHHHHHHHHHHh--cch--------hhhhCc-ccccCcCcCcCcccccCCCc
Confidence            59999999999999986443   366666665441  111        111112 78999999999999999986

...

>PRK15055 anaerobic sulfite reductase subunit A; Provisional

Probab=98.77  E-value=4.2e-09  Score=100.67  Aligned_cols=39  Identities=18%  Similarity=0.319  Sum_probs=34.9

Q ss_pred             ccccCcccccccccCCCCCCHHHHHHHHHHHHhhcCCcc
Q 045926          259 KLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQPME  297 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~~~~~  297 (302)
                      +.+.|+.||+|..+||++|++.++|..+|+.+.+...+|
T Consensus       305 g~~~CvgCGrC~~~CP~~I~i~~~i~~lr~~~~~~~~~~  343 (344)
T PRK15055        305 GYHMCVGCGRCDDRCPEYISFSNCINKLTDAVEEVLAEE  343 (344)
T ss_pred             chhhCcCcCccccccCCCCCHHHHHHHHHHHHHHhhhcc
Confidence            678999999999999999999999999999887766544

>PRK09800 putative hypoxanthine oxidase; Provisional

Probab=98.65  E-value=3.7e-08  Score=105.54  Aligned_cols=75  Identities=20%  Similarity=0.132  Sum_probs=63.3

Q ss_pred             EEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccC-CCCCccCccEEEECCEEecccccccc
Q 045926           60 KEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRS-CREGICGSCAMNIGGTNTVACLKPID  138 (302)
Q Consensus        60 ~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~-C~~g~CG~C~V~VnG~~~laC~t~v~  138 (302)
                      ++|+|+.            +.+++++++ +++|||+|++++.     .+.+.+ |..|.||+|+|.|||+++.||.+++.
T Consensus         3 i~~~vNg------------~~~~~~~~~-~~~l~~~LR~~~~-----~~~k~g~c~~g~CGaCtv~~dg~~v~sC~~~~~   64 (956)
T PRK09800          3 IHFTLNG------------APQELTVNP-GENVQKLLFNMGM-----HSVRNSDDGFGFAGSDAIIFNGNIVNASLLIAA   64 (956)
T ss_pred             EEEEECC------------EEEEEecCC-CCCHHHHHHHCCC-----CccccCCCCcccCCCCEEEECCeEEeHHHHHHH
Confidence            7888888            568888887 8999999999663     356776 88999999999999999999999998


Q ss_pred             CCCC-CceEEccCCC
Q 045926          139 GDTS-KPTIITPLPH  152 (302)
Q Consensus       139 ~~~~-~~~~Iepl~~  152 (302)
                      ...+ +..|||.|..
T Consensus        65 ~~~g~~i~Tvegl~~   79 (956)
T PRK09800         65 QLEKADIRTAESLGK   79 (956)
T ss_pred             HcCCCEEEecCCcCC
Confidence            7655 4568998863

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=98.60  E-value=5e-08  Score=96.45  Aligned_cols=75  Identities=21%  Similarity=0.405  Sum_probs=54.4

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCH
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDP  279 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~  279 (302)
                      .....||.||.|+.+||...       .|..+..+..   ..+       +.... .. +.+.|+.||.|+.+||.++++
T Consensus       360 ~~~~~Ci~Cg~C~~vCP~~l-------~p~~l~~~~~---~~~-------~~~~~-~~-~~~~C~~Cg~C~~vCP~~i~l  420 (435)
T TIGR01945       360 SPEKPCIRCGKCVQVCPMNL-------LPQQLNWLAL---ADE-------FDEAE-EH-NLMDCIECGCCSYVCPSNIPL  420 (435)
T ss_pred             ccCCcCcCccchhhhCccch-------hhHHHHHHhh---hcc-------cchhh-cC-CCCcCCcCCCcccccCCCCCH
Confidence            45579999999999999753       3444433321   111       11111 23 678999999999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 045926          280 ADAIHKMKTKHMLS  293 (302)
Q Consensus       280 ~~~I~~lR~~l~~~  293 (302)
                      .+.|+..|+.+.++
T Consensus       421 ~~~ir~~k~~l~~~  434 (435)
T TIGR01945       421 VQYIRQAKAKLRAK  434 (435)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988654

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit

Probab=98.54  E-value=1.4e-07  Score=94.00  Aligned_cols=94  Identities=17%  Similarity=0.363  Sum_probs=73.1

Q ss_pred             EEEEEEecCCCCCCCCCceeEEEE-ecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEE----CC-----E
Q 045926           60 KEFRIYRWNPDRPDSKPFLQSYHV-DLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNI----GG-----T  128 (302)
Q Consensus        60 ~~~~I~r~~p~~~~~~~~~~~y~v-~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~V----nG-----~  128 (302)
                      ++|+|++            +.+++ ++++ ++||||+|++ ++.     .+.+.+|..|.||+|+|.|    ||     +
T Consensus         1 i~~~~Ng------------~~~~~~~~~~-~~~ll~~lR~~~~l-----~g~k~gC~~G~CGaCtv~~~~~~~~~~~~~~   62 (467)
T TIGR02963         1 IRFFLNG------------ETVTLSDVDP-TRTLLDYLREDAGL-----TGTKEGCAEGDCGACTVVVGELVDGGKLRYR   62 (467)
T ss_pred             CEEEECC------------EEEEeecCCC-CCCHHHHHHHhcCC-----CCCCcccCCCCCCceEEEEEecCCCCcccce
Confidence            3577777            66888 6877 8999999996 443     3578899999999999999    99     9


Q ss_pred             EeccccccccCCCC-CceEEccCCC----chhhhhhhhccchhhhhcc
Q 045926          129 NTVACLKPIDGDTS-KPTIITPLPH----MFVIKDLVVDLTNFYQQYK  171 (302)
Q Consensus       129 ~~laC~t~v~~~~~-~~~~Iepl~~----~~vikDLvvD~~~~~~~~~  171 (302)
                      ++.||.+++....| +.+|||.|..    +..++.-.++.+.+-+.|.
T Consensus        63 ~v~sCl~~~~~~~g~~i~TvEgl~~~~~~l~~~q~a~~~~~~~QCG~C  110 (467)
T TIGR02963        63 SVNACIQFLPSLDGKAVVTVEDLRQPDGRLHPVQQAMVECHGSQCGFC  110 (467)
T ss_pred             EEehhhhhHHhcCCCEEEecCCCCCCCCCCCHHHHHHHHcCCCcCCCC
Confidence            99999999987655 4569999973    2335555667777766554

Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and

>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit

Probab=98.49  E-value=1.3e-07  Score=101.46  Aligned_cols=68  Identities=19%  Similarity=0.094  Sum_probs=56.1

Q ss_pred             eEEEEecCCCchhHHHHHHHcccccCCCccccc-CCCCCccCccEEEECCEEeccccccccCCCC-CceEEccCCC
Q 045926           79 QSYHVDLSECGPMVLDALQKIKAETDSSLSYRR-SCREGICGSCAMNIGGTNTVACLKPIDGDTS-KPTIITPLPH  152 (302)
Q Consensus        79 ~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~-~C~~g~CG~C~V~VnG~~~laC~t~v~~~~~-~~~~Iepl~~  152 (302)
                      +.+++++++ +++||++|++.+.     .+.+. +|..|.||+|+|.|||+++.||.+++....+ +..|||.|..
T Consensus         6 ~~~~~~~~~-~~~l~~~LR~~~l-----~~~k~~~c~~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tiegl~~   75 (951)
T TIGR03313         6 APQTLECKL-GENVQTLLFNMGM-----HSVRNSDDGFGFAGSDAILFNGVLKNASLLIAAQLEGAEVRTAESLGQ   75 (951)
T ss_pred             EEEEEecCC-CCCHHHHHHHCCC-----CCCcCCCCCcccCCCCEEEECCeEeeHHHHHHHHcCCCEEEecCcCCC
Confidence            557888887 8999999998542     24666 6999999999999999999999999987655 4568998863

Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.

>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1

Probab=98.48  E-value=2.2e-07  Score=98.69  Aligned_cols=65  Identities=25%  Similarity=0.505  Sum_probs=54.1

Q ss_pred             EEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEECCEEeccccccccCCCC-CceEEccCCC
Q 045926           82 HVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTS-KPTIITPLPH  152 (302)
Q Consensus        82 ~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~~~~~-~~~~Iepl~~  152 (302)
                      .+++++ +++||++|++ ++.     .+.+.+|..|.||+|+|.|||+++.||.+++....+ +..|||.|..
T Consensus         9 ~~~~~~-~~~l~~~lr~~~~~-----~~~k~gc~~g~cgactv~~dg~~~~sc~~~~~~~~g~~i~T~egl~~   75 (848)
T TIGR03311         9 EVDVNE-EKKLLEFLREDLRL-----TGVKNGCGEGACGACTVIVNGKAVRACRFTTAKLAGKEITTVEGLTE   75 (848)
T ss_pred             EeeCCC-CCcHHHHHHHhcCC-----CcCCCCCCCCCCCCcEEEECCeEEehhhhhHHhcCCCEEEecCCCCC
Confidence            456666 8999999996 553     257889999999999999999999999999988655 4568998864

Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.

>TIGR02910 sulfite_red_A sulfite reductase, subunit A

Probab=98.44  E-value=1.7e-07  Score=89.30  Aligned_cols=34  Identities=18%  Similarity=0.377  Sum_probs=31.0

Q ss_pred             ccccCcccccccccCCCCCCHHHHHHHHHHHHhh
Q 045926          259 KLYRCRAIKNCTATCPKGLDPADAIHKMKTKHML  292 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~  292 (302)
                      +...|+.||+|.++||++|++.++|..||+.+.+
T Consensus       299 G~~~CvgCGrC~~~CP~~idi~~~i~~i~~~~~~  332 (334)
T TIGR02910       299 GYHMCVGCGRCDDICPEYISFSNCINKLTAAVRE  332 (334)
T ss_pred             CccccCCcCchhhhCCCCCCHHHHHHHHHHHHhc
Confidence            6678999999999999999999999999987654

Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.

>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated

Probab=98.43  E-value=1.8e-07  Score=97.15  Aligned_cols=80  Identities=18%  Similarity=0.360  Sum_probs=55.2

Q ss_pred             HhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC
Q 045926          196 RKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK  275 (302)
Q Consensus       196 ~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~  275 (302)
                      ....+...+|+.||.|+.+||....          +..+.+...++..       ..+.  . ..+.|+.||+|.++||+
T Consensus       397 eEl~~eadrCI~CG~Cv~aCP~~l~----------i~~~I~~a~~G~~-------~~l~--~-l~~~Ct~CG~CeeVCPt  456 (781)
T PRK00941        397 EELKELAKKCTECGWCVRVCPNELP----------IPEAMEAAAKGDL-------SKLE--D-LYDKCIGCGRCEQVCPK  456 (781)
T ss_pred             HHHHHhhhhCcCCCCccccCCCCcc----------hhHHHHHHhcCCh-------hhhh--h-hhhhccchhHHhhhCCC
Confidence            4455677899999999999997431          0111222122211       0111  1 35789999999999999


Q ss_pred             CCCHHHHHHHHHHHHhhcCC
Q 045926          276 GLDPADAIHKMKTKHMLSQP  295 (302)
Q Consensus       276 gI~~~~~I~~lR~~l~~~~~  295 (302)
                      ++++.+++..+|+.+++..+
T Consensus       457 gIpi~emi~~Ar~~~Vk~~k  476 (781)
T PRK00941        457 NIPIVSMIEKAAQHRIKNEK  476 (781)
T ss_pred             CCChHHHHHHHHHHHHHhcC
Confidence            99999999999988876543

>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain

Probab=98.42  E-value=3.5e-07  Score=69.19  Aligned_cols=52  Identities=31%  Similarity=0.677  Sum_probs=42.0

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEEC------------------CEEeccccccccC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIG------------------GTNTVACLKPIDG  139 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~Vn------------------G~~~laC~t~v~~  139 (302)
                      +.+++++ |.|||+||+..+..      +..+|+.|.||+|.|+|.                  +..+|||.+.+..
T Consensus        10 ~~~~~~~-g~~ll~al~~~g~~------~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~   79 (84)
T cd00207          10 VEVEVPE-GETLLDAAREAGID------IPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTD   79 (84)
T ss_pred             EEEEECC-CCcHHHHHHHcCCC------cccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCC
Confidence            5667777 89999999997632      556799999999999996                  4467899998853

Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=98.41  E-value=1.8e-07  Score=97.10  Aligned_cols=75  Identities=19%  Similarity=0.466  Sum_probs=52.5

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHH
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPA  280 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~  280 (302)
                      ....||.||.|+.+||...       .|..+....+    ..+.      ... ..+ +++.|+.||.|+.+||.+|++.
T Consensus       368 ~e~~CI~CG~Cv~aCP~~l-------lP~~l~~~~~----~~d~------~~~-~~~-~~~~CieCG~C~~vCPs~Iplv  428 (695)
T PRK05035        368 PEQPCIRCGACADACPASL-------LPQQLYWFAK----AEEH------DKA-QEY-NLFDCIECGACAYVCPSNIPLV  428 (695)
T ss_pred             chhhcCCcccHHHHCCccc-------hhhhHHHhhh----cccc------chh-hhc-ChhhccccCcccccCCCCCcHH
Confidence            4578999999999999754       3433322211    1110      111 123 6789999999999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 045926          281 DAIHKMKTKHMLSQ  294 (302)
Q Consensus       281 ~~I~~lR~~l~~~~  294 (302)
                      ++|...+..+..+.
T Consensus       429 ~~~r~aK~~i~~~~  442 (695)
T PRK05035        429 QYYRQAKAEIRAIE  442 (695)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999887765543

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=98.38  E-value=4.8e-07  Score=89.65  Aligned_cols=73  Identities=14%  Similarity=0.109  Sum_probs=56.4

Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcc--cccccccCCCCCCH
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRA--IKNCTATCPKGLDP  279 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~--Cg~C~~vCP~gI~~  279 (302)
                      ...||+||+|+.+||..       +-|..+++++..    .+.      +... .. +++.|..  ||.|+.+||.+|+.
T Consensus       373 ~~~CI~Cg~C~~vCP~~-------L~P~~l~ra~~~----~d~------~~~e-~~-~~~~C~EedCG~CsyVCPskipL  433 (448)
T PRK05352        373 ERAMVPIGNYERVMPLD-------ILPTQLLRALIV----GDT------DEAQ-AL-GALELDEEDLALCTFVCPGKYEY  433 (448)
T ss_pred             CcceeecCcHhhcCCCC-------CCHHHHHHHHHc----CCH------HHHH-Hc-CchhcCccccCCCccCCCCCchH
Confidence            45899999999999973       468777776643    111      1111 23 7899999  99999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 045926          280 ADAIHKMKTKHMLS  293 (302)
Q Consensus       280 ~~~I~~lR~~l~~~  293 (302)
                      .+.|+..+..+.+.
T Consensus       434 ~q~iR~~k~~~~~e  447 (448)
T PRK05352        434 GPILRDGLDRIEKE  447 (448)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999998887654

>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA

Probab=98.38  E-value=2.8e-07  Score=95.48  Aligned_cols=81  Identities=20%  Similarity=0.383  Sum_probs=55.2

Q ss_pred             HHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCC
Q 045926          195 DRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCP  274 (302)
Q Consensus       195 ~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP  274 (302)
                      .....+...+|+.||.|+.+||+...       .   ........++..       ..+..   ..+.|+.||+|+++||
T Consensus       357 ~~el~~~~~kCI~CG~Cv~aCP~~l~-------i---~e~i~~~~~G~~-------~~l~~---~~~~Ct~CG~C~evCP  416 (731)
T cd01916         357 DEEFQELAAKCTDCGWCTRACPNSLR-------I---KEAMEAAKEGDF-------SGLAD---LFDQCVGCGRCEQECP  416 (731)
T ss_pred             hHHHHHhhhcCCCCCcccccCCCCCc-------H---HHHHHHHhcCCh-------hhhhh---hHhhhhhhhHHhhhCC
Confidence            34445677899999999999997531       0   111111222211       01111   3578999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCC
Q 045926          275 KGLDPADAIHKMKTKHMLSQP  295 (302)
Q Consensus       275 ~gI~~~~~I~~lR~~l~~~~~  295 (302)
                      +++++.++|..+++...+.+.
T Consensus       417 ~gIpi~~mi~~a~~~~vk~~~  437 (731)
T cd01916         417 KEIPIINMIEKAARERIKEEK  437 (731)
T ss_pred             CCCChHHHHHHHHHHHHhccc
Confidence            999999999999988776543

ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.

>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]

Probab=98.37  E-value=1.4e-07  Score=92.58  Aligned_cols=57  Identities=23%  Similarity=0.398  Sum_probs=50.3

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEECC--EEeccccccccC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIGG--TNTVACLKPIDG  139 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~VnG--~~~laC~t~v~~  139 (302)
                      |.|.+++ |+|||+|+..+| -++|.|||+..-. .|.|++|.|+|+-  +++.||..++-.
T Consensus        40 ~~v~v~p-g~tvlqac~~~g-v~iprfcyh~rlsvagncrmclvevekspkpva~campvm~   99 (708)
T KOG2282|consen   40 QSVMVEP-GTTVLQACAKVG-VDIPRFCYHERLSVAGNCRMCLVEVEKSPKPVAACAMPVMK   99 (708)
T ss_pred             eeEeeCC-CcHHHHHHHHhC-CCcchhhhhhhhhhccceeEEEEEeccCCCcchhhcccccC
Confidence            6788888 999999999999 5699999997644 6999999999997  688999999976

>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]

Probab=98.35  E-value=3.6e-08  Score=85.64  Aligned_cols=61  Identities=25%  Similarity=0.412  Sum_probs=36.7

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      .....||.|+.|..+||+....               ...+.+......+.. .- .. ....|++||.|+++||+++-
T Consensus        52 l~~~~CIgC~lCa~iCP~~aI~---------------m~~~~~~~~g~~~~~-~~-~I-n~grCIfCg~C~e~CPt~Al  112 (172)
T COG1143          52 LDRDKCIGCGLCANICPANAIT---------------METAERKVDGRKKPK-RP-DI-NLGRCIFCGLCVEVCPTGAL  112 (172)
T ss_pred             ccccCCcchhHHHhhCCcCceE---------------EEEcccCCCCccccc-cc-ee-ccccccccCchhhhCchhhh
Confidence            3455699999999999986521               000111100000111 11 12 56799999999999999874

>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit

Probab=98.34  E-value=4.2e-07  Score=94.37  Aligned_cols=77  Identities=19%  Similarity=0.369  Sum_probs=52.1

Q ss_pred             HhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC
Q 045926          196 RKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK  275 (302)
Q Consensus       196 ~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~  275 (302)
                      ....+...+|+.||.|..+||.....          ........++..       ..+.  . ..+.|+.||+|.++||+
T Consensus       392 eeLl~~~~kCI~CG~Cv~aCP~~l~i----------~e~i~~a~~G~l-------~~l~--~-~~d~C~~CG~C~evCP~  451 (784)
T TIGR00314       392 EELMELANKCTQCGNCVRTCPNSLRV----------DEAMAHAQKGDL-------SKLE--Q-LEEQCYACGRCEQACPK  451 (784)
T ss_pred             HHHhhhcccCCCcccchhhCCCCcch----------HHHHHHHhcCCc-------cccc--c-CHhhhhhhhHHhccCCC
Confidence            35556788999999999999975310          111111112110       0111  1 34589999999999999


Q ss_pred             CCCHHHHHHHHHHHHhh
Q 045926          276 GLDPADAIHKMKTKHML  292 (302)
Q Consensus       276 gI~~~~~I~~lR~~l~~  292 (302)
                      +|++.++|..+|+...+
T Consensus       452 gIpIvemI~~Ar~~~v~  468 (784)
T TIGR00314       452 NIPIISMITKAGEDRLK  468 (784)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999976544

Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=98.32  E-value=7.4e-07  Score=88.21  Aligned_cols=73  Identities=14%  Similarity=0.071  Sum_probs=55.1

Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcc--cccccccCCCCCCH
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRA--IKNCTATCPKGLDP  279 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~--Cg~C~~vCP~gI~~  279 (302)
                      ...||.||+|+.+||+..       -|..+.++++.    ++      ++.. +.. +++.|..  ||.|+.|||.+++.
T Consensus       372 ~~aCI~CG~C~~vCPm~L-------~P~~L~~a~~~----~d------~d~a-~~l-g~~ecieedCG~CsyVCPSki~l  432 (447)
T TIGR01936       372 ERAMIPIGIYERVMPLDI-------PPTLLLKALIA----GD------FDKA-QRL-GALEVDEEDFALCTFVDPSKYEY  432 (447)
T ss_pred             ccceeECChHhhcCCCCC-------CHHHHHHHHHc----CC------HHHH-HHC-CCcccCccccccCceECCCCchH
Confidence            456999999999999753       57777666532    22      1111 134 7899998  99999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 045926          280 ADAIHKMKTKHMLS  293 (302)
Q Consensus       280 ~~~I~~lR~~l~~~  293 (302)
                      .+.|+..-..+.+.
T Consensus       433 ~q~iR~~l~~~~~e  446 (447)
T TIGR01936       433 GSIVRESLDRIEKE  446 (447)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99998887777654

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>CHL00134 petF ferredoxin; Validated

Probab=98.19  E-value=4.9e-06  Score=65.94  Aligned_cols=38  Identities=29%  Similarity=0.596  Sum_probs=32.2

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI  125 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V  125 (302)
                      +.+++++ |.||||||.+.|.      ....+|+.|.||+|.|.|
T Consensus        17 ~~~~~~~-~~tLL~a~~~~Gi------~i~~~C~~G~Cg~C~v~v   54 (99)
T CHL00134         17 VTIDCPD-DVYILDAAEEQGI------DLPYSCRAGACSTCAGKV   54 (99)
T ss_pred             EEEEECC-CCcHHHHHHHcCC------CCCcCCCCccCCCCEEEE
Confidence            5677777 8999999999874      356679999999999988

>PLN00192 aldehyde oxidase

Probab=98.17  E-value=2.6e-06  Score=94.48  Aligned_cols=95  Identities=16%  Similarity=0.270  Sum_probs=75.4

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEE-ecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEE----------C
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHV-DLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNI----------G  126 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v-~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~V----------n  126 (302)
                      .++|.|+.            +.|++ ++++ ++||||.|++ ++.     -..+.+|.+|.||+|+|.|          +
T Consensus         5 ~i~~~vNg------------~~~~~~~~~p-~~~Ll~~LR~~~~l-----tgtK~gC~~G~CGaCtV~v~~~~~~~~~~~   66 (1344)
T PLN00192          5 SLVFAVNG------------ERFELSSVDP-STTLLEFLRTQTPF-----KSVKLGCGEGGCGACVVLLSKYDPVLDQVE   66 (1344)
T ss_pred             eEEEEECC------------EEEEeccCCC-CCcHHHHHHHhhCC-----CCcCCCCCCCcCCCcEEEEeeccccccCcC
Confidence            48899988            66888 5777 8999999996 342     2577899999999999999          6


Q ss_pred             CEEeccccccccCCCC-CceEEccCCC----chhhhhhhhccchhhhhcc
Q 045926          127 GTNTVACLKPIDGDTS-KPTIITPLPH----MFVIKDLVVDLTNFYQQYK  171 (302)
Q Consensus       127 G~~~laC~t~v~~~~~-~~~~Iepl~~----~~vikDLvvD~~~~~~~~~  171 (302)
                      |+++.||.+++-...| +.+|||.|.+    +-.++.-+++.+.+-+.|.
T Consensus        67 ~~~v~sCl~~~~~~~g~~i~TvEgl~~~~~~lhpvq~a~~~~~~~QCGfC  116 (1344)
T PLN00192         67 DFTVSSCLTLLCSVNGCSITTSEGLGNSKDGFHPIHKRFAGFHASQCGFC  116 (1344)
T ss_pred             CcEEehHHHHHHHhCCCEEEeecCcCCCCCCCCHHHHHHHHcCCCccCCC
Confidence            8999999999987655 4679999973    3346666778887766554

>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions

Probab=98.17  E-value=3.3e-06  Score=63.24  Aligned_cols=41  Identities=29%  Similarity=0.606  Sum_probs=33.0

Q ss_pred             eEEEEecCCCchh-HHHHHHHc-ccccCCCcccccCCCCCccCccEEEEC
Q 045926           79 QSYHVDLSECGPM-VLDALQKI-KAETDSSLSYRRSCREGICGSCAMNIG  126 (302)
Q Consensus        79 ~~y~v~~~~~g~t-vLdal~~i-~~~~dptL~~~~~C~~g~CG~C~V~Vn  126 (302)
                      +.++|++.+ |.| ||+||++. +.      ....+|+.|.||+|.|.|.
T Consensus         6 ~~~~~~~~~-~~~~ll~~~~~~~gi------~i~~~C~~g~Cg~C~v~v~   48 (78)
T PF00111_consen    6 KGVTVEVPP-GETLLLDALERAGGI------GIPYSCGGGGCGTCRVRVL   48 (78)
T ss_dssp             EEEEEEEET-TSBBHHHHHHHTTTT------TSTTSSSSSSSSTTEEEEE
T ss_pred             eEEEEEeCC-CccHHHHHHHHcCCC------CcccCCCCCccCCcEEEEe
Confidence            447777777 788 99999987 42      3557899999999999985

Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]

Probab=98.17  E-value=1.7e-06  Score=85.81  Aligned_cols=73  Identities=23%  Similarity=0.594  Sum_probs=51.5

Q ss_pred             cCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHH
Q 045926          204 ECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAI  283 (302)
Q Consensus       204 ~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I  283 (302)
                      .||+||.|+.+||++.       -|.-+   +++. .. ++.+++.      .+ .+..|..||.|..+||.+|++..++
T Consensus       366 sCi~C~~C~d~CP~~L-------lp~ql---~~~a-~~-~~~~e~~------~~-~l~dCIECg~Ca~vCPs~iplvq~~  426 (529)
T COG4656         366 SCIRCSLCADACPVNL-------LPQQL---YWFA-KG-EQHDEEE------EH-NLLDCIECGACAYVCPSNIPLVQYF  426 (529)
T ss_pred             ccccHHHHHHhCcccc-------CHHHh---hHHh-hh-hhhhHHH------HH-HhhhhhhhCcchhcCCCCCCHHHHH
Confidence            7999999999999865       34333   2221 11 1111111      12 5778999999999999999999999


Q ss_pred             HHHHHHHhhcCC
Q 045926          284 HKMKTKHMLSQP  295 (302)
Q Consensus       284 ~~lR~~l~~~~~  295 (302)
                      ...+..+.....
T Consensus       427 r~~Ka~i~~~~~  438 (529)
T COG4656         427 RQEKAEILAQRQ  438 (529)
T ss_pred             HHHHHHHHHhch
Confidence            988887766543

>PRK10713 2Fe-2S ferredoxin YfaE; Provisional

Probab=98.16  E-value=4.9e-06  Score=63.91  Aligned_cols=42  Identities=31%  Similarity=0.619  Sum_probs=32.1

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT  128 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~  128 (302)
                      +.+++.+.|.||||||++.|.      ...++|+.|.||+|.+++ .|.
T Consensus        11 ~~~~~~~~~~tlL~a~~~~gi------~~p~~Cr~G~Cg~C~~~~~sG~   53 (84)
T PRK10713         11 TQLLCQDEHPSLLAALESHNV------AVEYQCREGYCGSCRTRLVAGQ   53 (84)
T ss_pred             cEEEecCCCCcHHHHHHHcCC------CCCCCCCCeECCCCEeEEEeCe
Confidence            345554425899999999874      367789999999999986 553

>TIGR02969 mam_aldehyde_ox aldehyde oxidase

Probab=98.12  E-value=2.9e-06  Score=93.99  Aligned_cols=94  Identities=18%  Similarity=0.324  Sum_probs=72.2

Q ss_pred             EEEEEEecCCCCCCCCCceeEE-EEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEEC----------C
Q 045926           60 KEFRIYRWNPDRPDSKPFLQSY-HVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIG----------G  127 (302)
Q Consensus        60 ~~~~I~r~~p~~~~~~~~~~~y-~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~Vn----------G  127 (302)
                      ++|.|++            +.+ .+++++ ++||||.|++ ++.     -..+.+|.+|.||+|+|.||          |
T Consensus         3 ~~~~~Ng------------~~~~~~~~~~-~~~ll~~LR~~~~l-----~gtk~gC~~G~CGaCtV~~~~~~~~~~~~~~   64 (1330)
T TIGR02969         3 LLFYVNG------------RKVVEKNVDP-ETMLLPYLRKKLRL-----TGTKYGCGGGGCGACTVMISRYNPSTKSIRH   64 (1330)
T ss_pred             EEEEECC------------EEEEeccCCC-CCcHHHHHHhhcCC-----CCCCCCcCCCCCCCcEEEECCccccccccCC
Confidence            6788888            455 346667 8999999996 443     25788999999999999998          5


Q ss_pred             EEeccccccccCCCC-CceEEccCCC----chhhhhhhhccchhhhhcc
Q 045926          128 TNTVACLKPIDGDTS-KPTIITPLPH----MFVIKDLVVDLTNFYQQYK  171 (302)
Q Consensus       128 ~~~laC~t~v~~~~~-~~~~Iepl~~----~~vikDLvvD~~~~~~~~~  171 (302)
                      +++.||.+++....| +.+|||.|.+    +..++.-.+|.+.+-+.|.
T Consensus        65 ~~v~sCl~~~~~~~g~~v~TvEgl~~~~~~l~pvq~a~~~~~~~QCGfC  113 (1330)
T TIGR02969        65 HPVNACLTPICSLYGAAVTTVEGIGSTRTRLHPVQERIAKCHGTQCGFC  113 (1330)
T ss_pred             cEEehhHHHHHHhCCCEEEecCCcCCCCCCCCHHHHHHHHcCCCcCCCC
Confidence            899999999987655 4679999963    3345666678877766554

Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.

>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A

Probab=98.11  E-value=5.5e-07  Score=62.53  Aligned_cols=50  Identities=28%  Similarity=0.524  Sum_probs=20.4

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCC
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCP  274 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP  274 (302)
                      +.+.++|++||.|+.+||....            ..   ......          .... ..+.|++||.|+.+||
T Consensus         3 ~id~~~C~~C~~C~~~CP~~~~------------~~---~~~~~~----------~~~~-~~~~C~~Cg~C~~~CP   52 (52)
T PF13237_consen    3 VIDEDKCIGCGRCVKVCPADNA------------IA---IDDGEK----------KVEI-DPERCIGCGACVEVCP   52 (52)
T ss_dssp             ---TT------TTGGG-TT--------------------EEE-SS----------SEEE--TTT--TTSHHHHH-T
T ss_pred             ccCcccCcCCcChHHHccchhH------------HH---hhccCC----------CeEe-CcccccccChhhhhCc
Confidence            4567899999999999997210            00   011000          0012 4679999999999999

>TIGR02484 CitB CitB domain protein

Probab=98.10  E-value=3e-06  Score=81.44  Aligned_cols=72  Identities=18%  Similarity=0.350  Sum_probs=51.3

Q ss_pred             hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC--
Q 045926          198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK--  275 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~--  275 (302)
                      ..+.+..|..|+.|...||+.....     +             +.+.++..+..      .++.|.+||.|...||.  
T Consensus         9 ~~R~l~iC~~C~~C~~~CpvfPa~~-----~-------------~~~~~~~d~~~------la~lChnC~~C~~~CPy~p   64 (372)
T TIGR02484         9 AKRVLNLCNSCGYCTGLCAVFPAAQ-----G-------------RPDLTRGDLRH------LAHLCHDCQSCWHDCQYAP   64 (372)
T ss_pred             HHHHhHhCcCcCCccccCCCccccc-----c-------------ccccCHHHHHH------HHHHCcCcccccccCcCCC
Confidence            3445678999999999999875211     0             00001111211      46799999999999999  


Q ss_pred             ----CCCHHHHHHHHHHHHhhc
Q 045926          276 ----GLDPADAIHKMKTKHMLS  293 (302)
Q Consensus       276 ----gI~~~~~I~~lR~~l~~~  293 (302)
                          ++++.+++.++|....++
T Consensus        65 PHef~v~~p~lma~~R~~~~~~   86 (372)
T TIGR02484        65 PHAFAINLPATLADVRRASYAE   86 (372)
T ss_pred             CccccCCHHHHHHHHHHHHHHh
Confidence                779999999999877554

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.

>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system

Probab=98.10  E-value=8.1e-06  Score=65.90  Aligned_cols=51  Identities=18%  Similarity=0.306  Sum_probs=39.6

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEE
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNI  125 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~V  125 (302)
                      .+.+.+.+|.|..         ..+++.+ |.||||||++.+..      +..+|+ .|.||+|.|.|
T Consensus         3 ~~~~~~~~~~p~~---------~~~~~~~-g~tLL~a~~~~gi~------i~~~CgG~G~CgtC~v~V   54 (110)
T TIGR02007         3 IVFLPHEDLCPEG---------AVVEAKP-GETILDVALDNGIE------IEHACEKSCACTTCHCIV   54 (110)
T ss_pred             EEEEeCcccCCCC---------eEEEECC-CChHHHHHHHcCCC------ccccCCCCceeCCCEEEE
Confidence            4566667788766         5677777 99999999998732      445798 69999999988

This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.

>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J

Probab=98.07  E-value=7.6e-08  Score=67.49  Aligned_cols=54  Identities=24%  Similarity=0.570  Sum_probs=27.6

Q ss_pred             cCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          204 ECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       204 ~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      +||.||+|+.+||.........              ......     ....... ..+.|++||.|+.+||+++
T Consensus         1 kCi~Cg~C~~~CP~~~~~~~~~--------------~~~~~~-----~~~~~~~-~~~~C~~Cg~C~~~CP~~A   54 (55)
T PF13187_consen    1 KCIGCGRCVEACPVGVIEFDED--------------GGKKVV-----DKDNERR-NAEKCIGCGACVKACPTGA   54 (55)
T ss_dssp             C--TTTHHHHHSTTT-EEEETT--------------TTCEEC-----SECCEST-TGGG--TTCHHHHHSTTT-
T ss_pred             CCCCcchHHHHCCccCeEccCc--------------cccccc-----cccccCC-CCCccccHhHHHHHcchhh
Confidence            6999999999999765311000              000000     0000001 3468999999999999985

>PF13746 Fer4_18: 4Fe-4S dicluster domain

Probab=98.07  E-value=3.9e-07  Score=67.60  Aligned_cols=21  Identities=29%  Similarity=0.651  Sum_probs=19.9

Q ss_pred             ccccCcccccccccCCCCCCH
Q 045926          259 KLYRCRAIKNCTATCPKGLDP  279 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~gI~~  279 (302)
                      +...|+.||+|+.+||++||+
T Consensus        48 ~~~~CVgCgrCv~~CP~~Idi   68 (69)
T PF13746_consen   48 GEGDCVGCGRCVRVCPAGIDI   68 (69)
T ss_pred             CCccCCCcChHhhhcCCCCCc
Confidence            788999999999999999986

>TIGR02008 fdx_plant ferredoxin [2Fe-2S]

Probab=98.05  E-value=1.3e-05  Score=63.17  Aligned_cols=38  Identities=26%  Similarity=0.607  Sum_probs=31.4

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI  125 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V  125 (302)
                      ..+++.+ |.||||||.+.|..      ...+|+.|.||+|.|+|
T Consensus        15 ~~~~~~~-g~tLLda~~~~Gi~------i~~~C~~G~Cg~C~v~v   52 (97)
T TIGR02008        15 ETIECPD-DQYILDAAEEAGID------LPYSCRAGACSTCAGKV   52 (97)
T ss_pred             EEEEECC-CCcHHHHHHHcCCC------CCcCCCCccCCCCceEE
Confidence            4566667 89999999998742      45679999999999988

This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.

>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=98.03  E-value=3.8e-07  Score=63.44  Aligned_cols=52  Identities=23%  Similarity=0.595  Sum_probs=24.5

Q ss_pred             cCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          204 ECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       204 ~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      +||.||.|+.+||...+.....             .+...     + ..+  .. ..+.|++||.|+.+||+++
T Consensus         1 ~C~~C~~C~~~CP~~~i~~~~~-------------~~~~~-----~-~~~--~~-~~~~C~~C~~C~~~CP~~A   52 (52)
T PF12838_consen    1 KCIGCGACVEACPTGAIRLDEE-------------ENEEG-----K-PKM--VI-DPDKCTGCGACVEVCPTGA   52 (52)
T ss_dssp             C-SS--HHHHH-TTHHCEEEET-------------TT-SS-----S-TTS--EE-TGGG----SHHHHHTTTS-
T ss_pred             CCCCcCchHHhcCccccCcccc-------------cccCC-----c-eEE--EE-echhCcCcChhhhhCcCcC
Confidence            5999999999999654311000             00000     0 001  12 4678999999999999985

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.

>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B

Probab=98.01  E-value=6.7e-07  Score=64.31  Aligned_cols=52  Identities=23%  Similarity=0.514  Sum_probs=25.3

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC-CC
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK-GL  277 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~-gI  277 (302)
                      +.++||.||.|+.+||.....            ++.  .+.. .    +   +  .. ....|+.||.|+.+||+ ++
T Consensus         4 d~~~Ci~Cg~C~~~Cp~~~~~------------~i~--~~~~-~----~---~--~v-~~~~C~GCg~C~~~CPv~~A   56 (59)
T PF14697_consen    4 DEDKCIGCGKCVRACPDGAID------------AIE--VDEG-K----K---V--PV-NPDKCIGCGLCVKVCPVKDA   56 (59)
T ss_dssp             -TTT----SCCCHHCCCCS-S-------------EC--CTTT-T----S---S--EC-E-TT--S-SCCCCCSSSTTS
T ss_pred             CcccccChhhHHhHcCcccee------------eEE--ecCC-e----e---E--Ee-ccccCcCcCcccccCCCccC
Confidence            457899999999999963310            100  0110 0    0   0  12 34689999999999996 65

...

>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein

Probab=97.98  E-value=2e-06  Score=75.53  Aligned_cols=63  Identities=19%  Similarity=0.402  Sum_probs=36.8

Q ss_pred             hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...+.++||.||.|+.+||......           .+..  +....  ......+  .. ....|+.||.|+++||+++
T Consensus        57 i~~~~~kCi~Cg~C~~aCP~~ai~~-----------~~~~--~~~~~--~~~~~~~--~i-d~~~Ci~Cg~Cv~aCP~~A  118 (183)
T TIGR00403        57 IHFEFDKCIACEVCVRVCPINLPVV-----------DWEF--NKAIK--KKQLKNY--SI-DFGVCIFCGNCVEYCPTNC  118 (183)
T ss_pred             EEeCcccCcCcCChhhhCCCCcccc-----------cccc--ccccc--cccccee--ec-CcccccCcCchhhhcCCCC
Confidence            3456789999999999999753100           0000  00000  0000001  11 3468999999999999876


Q ss_pred             C
Q 045926          278 D  278 (302)
Q Consensus       278 ~  278 (302)
                      -
T Consensus       119 I  119 (183)
T TIGR00403       119 L  119 (183)
T ss_pred             e
Confidence            4

>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]

Probab=97.90  E-value=1.3e-06  Score=74.49  Aligned_cols=101  Identities=21%  Similarity=0.416  Sum_probs=56.5

Q ss_pred             hhhhhhhccchhhhhccccc-cccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHH
Q 045926          155 VIKDLVVDLTNFYQQYKSIE-PWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLH  233 (302)
Q Consensus       155 vikDLvvD~~~~~~~~~~~~-~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~  233 (302)
                      .++.+.+..++++..-..++ ||-  +.+.+  ..++.....+..-.+..+||.|-.|.++||.....          +.
T Consensus        66 ~~rGf~itLsh~f~~p~TInYPfE--KgplS--~RFRGehalrRyp~geerCIACklCeavCPaqait----------ie  131 (212)
T KOG3256|consen   66 LIRGFMITLSHTFREPVTINYPFE--KGPLS--PRFRGEHALRRYPSGEERCIACKLCEAVCPAQAIT----------IE  131 (212)
T ss_pred             HHHHHHhhHHhhcCCCeeecCccc--cCCCC--cccccchhhhcCCCcchhhhhHHHHHHhCCcccce----------ee
Confidence            55777777777775444443 221  11111  12222233344445678999999999999975421          11


Q ss_pred             HHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          234 AYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       234 a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                       +....|+     ..|....  +. ....|+.||.|+++||++.-
T Consensus       132 -ae~r~dg-----srRttrY--dI-DmtkCIyCG~CqEaCPvdai  167 (212)
T KOG3256|consen  132 -AEERTDG-----SRRTTRY--DI-DMTKCIYCGFCQEACPVDAI  167 (212)
T ss_pred             -ceecCCc-----cccceee--cc-cceeeeeecchhhhCCccce
Confidence             1111111     1122111  22 45689999999999998864

>PRK15033 tricarballylate utilization protein B; Provisional

Probab=97.83  E-value=1.8e-05  Score=76.54  Aligned_cols=75  Identities=13%  Similarity=0.307  Sum_probs=52.0

Q ss_pred             HHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCC
Q 045926          195 DRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCP  274 (302)
Q Consensus       195 ~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP  274 (302)
                      +.+..+.+..|..|..|...||+..         ...   .|....      +..+..      ....|++||.|...||
T Consensus        25 ~~e~~r~~~iC~~Cr~C~~~CpvfP---------~l~---~r~~~~------~~d~~~------~a~~C~~Cg~C~~~CP   80 (389)
T PRK15033         25 EAEVARQMQICNACRYCEGFCAVFP---------AMT---RRLEFG------KADIHY------LANLCHNCGACLHACQ   80 (389)
T ss_pred             HHHHHHHhHhCCCCCCccccCCCch---------hhh---hhhcCC------hhhhHH------HHHhCcCcccccccCc
Confidence            3345566789999999999999863         211   111011      011111      3458999999999999


Q ss_pred             C------CCCHHHHHHHHHHHHhhc
Q 045926          275 K------GLDPADAIHKMKTKHMLS  293 (302)
Q Consensus       275 ~------gI~~~~~I~~lR~~l~~~  293 (302)
                      .      +|++.+++.++|....++
T Consensus        81 ~apPhef~i~ip~~l~~~r~~sy~~  105 (389)
T PRK15033         81 YAPPHEFAVNVPKAMAQVRLETYQE  105 (389)
T ss_pred             CCCCcccCCCHHHHHHHHHHHHHHH
Confidence            9      999999999999876543

>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]

Probab=97.72  E-value=2.3e-05  Score=78.38  Aligned_cols=77  Identities=23%  Similarity=0.452  Sum_probs=51.6

Q ss_pred             HHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCC
Q 045926          195 DRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCP  274 (302)
Q Consensus       195 ~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP  274 (302)
                      +.+......+|..||-|..+||.-.      --|.++-.|    .++.-    ..++.      -...|..||+|.++||
T Consensus       392 ~ee~~e~a~kc~~cG~C~~~CP~~l------~i~eam~~A----~~Gd~----~~l~~------l~d~C~~C~rCEq~Cp  451 (772)
T COG1152         392 DEEFMEYARKCTYCGNCMRACPNEL------DIPEAMEYA----AKGDF----SKLED------LHDVCIGCGRCEQVCP  451 (772)
T ss_pred             hHHHHHHHHhcccccchhccCCccc------chHHHHHHh----hcCCh----HHHHH------HHHHhhhhhhhhhhCc
Confidence            3444556789999999999999533      123333333    22211    12221      2348999999999999


Q ss_pred             CCCCHHHHHHHHHHHHh
Q 045926          275 KGLDPADAIHKMKTKHM  291 (302)
Q Consensus       275 ~gI~~~~~I~~lR~~l~  291 (302)
                      ++|++..+|.+......
T Consensus       452 k~ipi~nm~~~a~~~~~  468 (772)
T COG1152         452 KNIPILNMIEKAAQKRI  468 (772)
T ss_pred             ccCchhhHHHHHHHHhh
Confidence            99999999888775543

>PRK13984 putative oxidoreductase; Provisional

Probab=97.70  E-value=2.4e-05  Score=80.21  Aligned_cols=35  Identities=26%  Similarity=0.479  Sum_probs=30.5

Q ss_pred             ccccCcccccccccCCCCCCHHHHHHHHHHHHhhc
Q 045926          259 KLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLS  293 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~  293 (302)
                      ..+.|+.||.|..+||.++++.+.+..+|+...+.
T Consensus       183 ~~~~C~~Cg~C~~~CP~~~~i~~~~~~i~~~~~~~  217 (604)
T PRK13984        183 EAARCVECGICTDTCPAHMDIPQYIKAIYKDDLEE  217 (604)
T ss_pred             hhhhhcCCCcccccCCCCCCHHHHHHHHHcCCHHH
Confidence            35789999999999999999999999998765544

>PLN03136 Ferredoxin; Provisional

Probab=97.63  E-value=8.4e-05  Score=63.16  Aligned_cols=38  Identities=37%  Similarity=0.617  Sum_probs=31.4

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI  125 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V  125 (302)
                      ..+++.+ |.+||||+++.|..      ...+|+.|.||+|.+.|
T Consensus        66 ~~~~~~~-g~tILdAa~~~Gi~------lp~sCr~G~CGtC~~~l  103 (148)
T PLN03136         66 QEVECEE-DVYVLDAAEEAGID------LPYSCRAGSCSSCAGKV  103 (148)
T ss_pred             EEEEeCC-CCcHHHHHHHcCCC------CCcCCCCccCCCCEEEE
Confidence            4566666 89999999998842      55679999999999988

>PLN02593 adrenodoxin-like ferredoxin protein

Probab=97.63  E-value=0.00018  Score=58.78  Aligned_cols=40  Identities=20%  Similarity=0.408  Sum_probs=32.1

Q ss_pred             eEEEEecCCCchhHHHHHHHcccccCCCcccccCCCC-CccCccEEEE
Q 045926           79 QSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCRE-GICGSCAMNI  125 (302)
Q Consensus        79 ~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~-g~CG~C~V~V  125 (302)
                      ++..|++.. |.|||+|+++.|..      +...|+. |.||.|.|.|
T Consensus        11 ~~~~v~~~~-G~tLl~a~~~~gi~------i~~~CgG~g~C~tC~V~V   51 (117)
T PLN02593         11 EERTVKAPV-GMSLLEAAHENDIE------LEGACEGSLACSTCHVIV   51 (117)
T ss_pred             CEEEEEECC-CCcHHHHHHHcCCC------CCccCCCcceeCCCEEEE
Confidence            446777777 99999999998742      3346984 9999999999

>PTZ00038 ferredoxin; Provisional

Probab=97.61  E-value=9.8e-05  Score=65.16  Aligned_cols=38  Identities=32%  Similarity=0.629  Sum_probs=31.1

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI  125 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V  125 (302)
                      ..+++.+ |.|||||+++.|..      ...+|+.|.||.|.|+|
T Consensus       107 ~~~~v~~-geTILdAae~aGI~------lp~sCr~G~CGtCkvrV  144 (191)
T PTZ00038        107 KVIECDE-DEYILDAAERQGVE------LPYSCRGGSCSTCAAKL  144 (191)
T ss_pred             EEEEeCC-CCcHHHHHHHcCCC------CCcCCCCccCCCCEeEE
Confidence            4466666 89999999998842      55679999999999988

>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]

Probab=97.60  E-value=0.00011  Score=70.50  Aligned_cols=82  Identities=23%  Similarity=0.401  Sum_probs=53.2

Q ss_pred             cCcccCcccCCCCCcccCCCCcccHHHH---HHHHHHhccCcchhHHHHHHHhhhc-------ccccccCcccccccccC
Q 045926          204 ECILCACCTTSCPSYWWNPEEYLGPAAL---LHAYRWICDSRDELTEERLQALTED-------ERKLYRCRAIKNCTATC  273 (302)
Q Consensus       204 ~CI~CG~C~~aCP~~~~~~~~~lgP~~l---~~a~r~~~d~rd~~~~~rl~~~~~~-------~~~~~~C~~Cg~C~~vC  273 (302)
                      .|+.|..|.. ||....      -|..+   +.+..+  +.-+. ..-++..+...       ......|+.||.|...|
T Consensus       294 ~Ct~C~yC~P-CP~gIn------IP~~f~lyN~~~~~--~~~~~-~~~~Y~~l~~~~~~~~~~~g~as~CieCgqCl~~C  363 (391)
T COG1453         294 PCTGCRYCLP-CPSGIN------IPEIFRLYNLAVAF--DDVDY-AKFRYNMLENGGHWFPGPKGKASDCIECGQCLEKC  363 (391)
T ss_pred             CCccccccCc-CCCCCC------hHHHHHHHHHHHhh--ccchh-hHHHHHHHhccCccCCCCcccccccchhhhhhhcC
Confidence            4999999999 998652      23322   222222  11111 12233333221       11357899999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhhcCC
Q 045926          274 PKGLDPADAIHKMKTKHMLSQP  295 (302)
Q Consensus       274 P~gI~~~~~I~~lR~~l~~~~~  295 (302)
                      |.++++.++++++++.+.....
T Consensus       364 Pq~l~Ip~~Lk~v~~~leg~~~  385 (391)
T COG1453         364 PQHLDIPELLKEVHEELEGEDL  385 (391)
T ss_pred             CCcCcHHHHHHHHHHHhcchHH
Confidence            9999999999999988876543

>PRK05888 NADH dehydrogenase subunit I; Provisional

Probab=97.58  E-value=1.7e-05  Score=68.25  Aligned_cols=60  Identities=28%  Similarity=0.474  Sum_probs=35.2

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      .+...||.||.|+.+||.......           .....+++.     .....  .. ....|+.||.|+.+||.++-
T Consensus        55 ~~~~~Ci~C~~C~~~CP~~ai~~~-----------~~~~~~g~~-----~~~~~--~i-~~~~C~~Cg~Cv~~CP~~Ai  114 (164)
T PRK05888         55 NGEERCIACKLCAAICPADAITIE-----------AAEREDGRR-----RTTRY--DI-NFGRCIFCGFCEEACPTDAI  114 (164)
T ss_pred             CCCccCCcccChHHHcCccccccc-----------cccCCCCcc-----cceee--ec-CCCcCcccCcchhhcCcCcc
Confidence            345599999999999996432100           000000100     00000  11 45689999999999998764

>PTZ00490 Ferredoxin superfamily; Provisional

Probab=97.52  E-value=0.00032  Score=59.26  Aligned_cols=55  Identities=13%  Similarity=0.292  Sum_probs=40.3

Q ss_pred             ceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEEC
Q 045926           57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIG  126 (302)
Q Consensus        57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~Vn  126 (302)
                      +..|+|.|...|-         ..++|++.+ |.|||+||+..+..     .....|. .|.||.|.|.|.
T Consensus        33 ~g~v~I~~~~~dG---------~~~~v~~~~-G~sLLeal~~~~~i-----~i~~~CGG~g~CgtC~V~V~   88 (143)
T PTZ00490         33 PGKVKVCVKKRDG---------THCDVEVPV-GMSLMHALRDVAKL-----DVEGTCNGCMQCATCHVYLS   88 (143)
T ss_pred             CCcEEEEEEcCCC---------CEEEEEECC-CccHHHHHHHcCCC-----CccccCCCCCEeCCCEEEEC
Confidence            4468888886442         347888888 99999999985422     1334576 799999999994

>COG0633 Fdx Ferredoxin [Energy production and conversion]

Probab=97.52  E-value=0.00023  Score=56.75  Aligned_cols=39  Identities=26%  Similarity=0.589  Sum_probs=30.6

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEEC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIG  126 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~Vn  126 (302)
                      +....+. |.||||++.+.|..      ...+|+.|.||+|.|+|.
T Consensus        15 ~~~~~~~-g~tiLe~a~~~gi~------i~~~C~~g~C~TC~v~v~   53 (102)
T COG0633          15 VTEAVNE-GETLLEAAERNGIP------IEYACRGGACGTCRVKVL   53 (102)
T ss_pred             eEEeccC-CcHHHHHHHHCCCc------ceecCCCCccCccEEEEe
Confidence            3344444 89999999998742      556799999999999884

>CHL00014 ndhI NADH dehydrogenase subunit I

Probab=97.48  E-value=3e-05  Score=67.12  Aligned_cols=61  Identities=25%  Similarity=0.443  Sum_probs=35.5

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      .+...|+.||.|+.+||+....           ..+++..+.+.    .++..+  .. ....|+.||.|+.+||.++-
T Consensus        56 ~~~~~Ci~Cg~C~~aCP~~~~~-----------~~~~~~~~~~~----~~~~~~--~i-d~~~C~~Cg~C~~~CP~~AI  116 (167)
T CHL00014         56 FEFDKCIACEVCVRVCPIDLPV-----------VDWKLETDIRK----KRLLNY--SI-DFGVCIFCGNCVEYCPTNCL  116 (167)
T ss_pred             eccccCCCcCcHHHhCCCCCcc-----------ccccccccccc----cccccc--cC-CCCcCcCccchHhhcCcCce
Confidence            4567899999999999975310           01111001000    011001  11 33579999999999999753

>PLN02906 xanthine dehydrogenase

Probab=97.43  E-value=0.00011  Score=81.76  Aligned_cols=77  Identities=17%  Similarity=0.407  Sum_probs=59.5

Q ss_pred             hhHHHHHHHcccccCCCcccccCCCCCccCccEEEEC------C----EEeccccccccCCCC-CceEEccCCC----ch
Q 045926           90 PMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIG------G----TNTVACLKPIDGDTS-KPTIITPLPH----MF  154 (302)
Q Consensus        90 ~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~Vn------G----~~~laC~t~v~~~~~-~~~~Iepl~~----~~  154 (302)
                      +||||.|++++.     -..+.+|.+|.||+|+|.||      |    +++.||.+++....| +.+|||.|.+    +.
T Consensus         2 ~~ll~~LR~~~l-----~g~k~gC~~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl~~~~~~~~   76 (1319)
T PLN02906          2 QTLLEYLRDLGL-----TGTKLGCGEGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGIGNRRDGLH   76 (1319)
T ss_pred             CcHHHHHHhCCC-----CCCCCCcCCCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCCCCCCCCCC
Confidence            689999998553     35788999999999999999      5    688999999987655 4568999963    33


Q ss_pred             hhhhhhhccchhhhhcc
Q 045926          155 VIKDLVVDLTNFYQQYK  171 (302)
Q Consensus       155 vikDLvvD~~~~~~~~~  171 (302)
                      .++.-.++.+.+-+.|.
T Consensus        77 ~vq~a~~~~~~~QCG~C   93 (1319)
T PLN02906         77 PVQEALASMHGSQCGFC   93 (1319)
T ss_pred             HHHHHHHHcCCCcCCCC
Confidence            45566667777666553

>PRK05113 electron transport complex protein RnfB; Provisional

Probab=97.42  E-value=3.8e-05  Score=67.95  Aligned_cols=53  Identities=21%  Similarity=0.362  Sum_probs=35.2

Q ss_pred             hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .+.+.++||.||+|+.+||....               ..  ..+..      .    .. ....|+.||.|+.+||+++
T Consensus       109 ~~id~~~Ci~Cg~Cv~aCp~~ai---------------~~--~~~~~------~----~v-~~~~C~~Cg~Cv~vCP~~A  160 (191)
T PRK05113        109 AFIDEDNCIGCTKCIQACPVDAI---------------VG--ATKAM------H----TV-ISDLCTGCDLCVAPCPTDC  160 (191)
T ss_pred             eEEeCCcCCCCChhhhhCCHhhh---------------ec--ccCCc------e----ee-cCCcCCchHHHHHHcCcCc
Confidence            34567899999999999994221               00  11100      0    01 2358999999999999987


Q ss_pred             C
Q 045926          278 D  278 (302)
Q Consensus       278 ~  278 (302)
                      -
T Consensus       161 I  161 (191)
T PRK05113        161 I  161 (191)
T ss_pred             e
Confidence            4

>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I

Probab=97.41  E-value=2e-05  Score=64.23  Aligned_cols=58  Identities=24%  Similarity=0.425  Sum_probs=34.4

Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      .++|+.||.|+.+||+......          .+. ..++..     .....  .. ....|+.||.|+.+||.++-
T Consensus        42 ~~~Ci~C~~C~~~CP~~ai~~~----------~~~-~~~~~~-----~~~~~--~~-~~~~C~~Cg~Cv~~CP~~al   99 (122)
T TIGR01971        42 EEKCIGCTLCAAVCPADAIRVV----------PAE-GEDGKR-----RLKFY--QI-NFGRCIFCGLCEEACPTDAI   99 (122)
T ss_pred             cCcCcCcchhhhhcCHhHeeee----------eec-cCCCce-----ecccc--eE-CcccCCCCCchhhhCCCccc
Confidence            4889999999999996432100          000 000000     00001  11 34579999999999999854

This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.

>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional

Probab=97.39  E-value=3.1e-05  Score=73.31  Aligned_cols=63  Identities=25%  Similarity=0.547  Sum_probs=36.3

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ..+..+||.|+.|..+||....           ...++...+++..  ..+...+  .. ....|..||.|+.+||+++
T Consensus       243 ~id~~~Ci~C~~C~~~CP~~ai-----------~~~~~~~~~~~~~--~~~~~~~--~~-d~~~C~gCg~C~~~CP~~A  305 (312)
T PRK14028        243 VIDHSKCIMCRKCWLYCPDDAI-----------IEAWREAEGPRGR--KFRMKMI--DF-DYQYCKGCGVCAEVCPTGA  305 (312)
T ss_pred             EECcccCcCcccccccCChhhh-----------hcccccccCcccc--cccceee--cC-CcccCcCcCchhhhCCHhh
Confidence            3467899999999999996531           1111111111100  0000001  11 3468999999999999864

>PRK02651 photosystem I subunit VII; Provisional

Probab=97.38  E-value=2.9e-05  Score=58.78  Aligned_cols=56  Identities=21%  Similarity=0.517  Sum_probs=34.2

Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      .++|+.||.|+.+||.........              +....   ..+. .  .. ....|+.||.|+.+||.++-
T Consensus         8 ~~~Ci~C~~C~~~CP~~~i~~~~~--------------~~~~~---~~~~-~--~~-~~~~C~~Cg~C~~~CP~~ai   63 (81)
T PRK02651          8 YDTCIGCTQCVRACPLDVLEMVPW--------------DGCKA---GQIA-S--SP-RTEDCVGCKRCETACPTDFL   63 (81)
T ss_pred             cccCCCcchHHHHCCccceecccc--------------ccccc---Cccc-c--cC-CCCcCCChhhhhhhcCCCce
Confidence            478999999999999643211000              00000   0000 0  11 34689999999999999864

>CHL00065 psaC photosystem I subunit VII

Probab=97.38  E-value=2.3e-05  Score=59.57  Aligned_cols=57  Identities=21%  Similarity=0.491  Sum_probs=34.1

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ...+|+.||.|+.+||.....-..              .+....   ....   ... ....|+.||.|+.+||.++-
T Consensus         7 ~~~~Ci~Cg~C~~~CP~~~i~~~~--------------~~~~~~---~~~~---~~~-~~~~C~~C~~C~~~CP~~Ai   63 (81)
T CHL00065          7 IYDTCIGCTQCVRACPTDVLEMIP--------------WDGCKA---KQIA---SAP-RTEDCVGCKRCESACPTDFL   63 (81)
T ss_pred             ccccCCChhHHHHHCCccchhhee--------------cccccc---cccc---ccC-CCCcCCChhhhhhhcCcccc
Confidence            356899999999999954311000              000000   0000   011 33589999999999999874

>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional

Probab=97.37  E-value=3.5e-05  Score=62.94  Aligned_cols=54  Identities=26%  Similarity=0.567  Sum_probs=35.9

Q ss_pred             hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...+..+|+.||.|+.+||.....               ...+..      .   +  .. ....|+.||.|+.+||.++
T Consensus        37 i~i~~~~Ci~C~~C~~~CP~~ai~---------------~~~~~~------~---~--~i-~~~~C~~Cg~Cv~~CP~~A   89 (120)
T PRK08348         37 ILYDVDKCVGCRMCVTVCPAGVFV---------------YLPEIR------K---V--AL-WTGRCVFCGQCVDVCPTGA   89 (120)
T ss_pred             EEECcccCcCcccHHHHCCccceE---------------cccccc------c---e--Ee-cCCcCcChhhhHHhCCcCc
Confidence            445678999999999999964310               000000      0   0  11 2357999999999999887


Q ss_pred             C
Q 045926          278 D  278 (302)
Q Consensus       278 ~  278 (302)
                      -
T Consensus        90 i   90 (120)
T PRK08348         90 L   90 (120)
T ss_pred             E
Confidence            5

>PRK08222 hydrogenase 4 subunit H; Validated

Probab=97.36  E-value=3.4e-05  Score=67.69  Aligned_cols=56  Identities=27%  Similarity=0.528  Sum_probs=35.3

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      .+...|++||.|+.+||+......               .+....   .+  .+  .. ....|+.||.|+.+||+++-
T Consensus        35 ~d~~~Ci~Cg~Cv~aCP~~Ai~~~---------------~~~~~~---~~--~~--~~-~~~~C~~Cg~C~~~CPt~AI   90 (181)
T PRK08222         35 LMPSQCIACGACTCACPANALTIQ---------------TDDQQN---SR--TW--QL-YLGRCIYCGRCEEVCPTRAI   90 (181)
T ss_pred             eChhhCcchhHHHHhCCccceEcc---------------cccccC---cc--ce--ee-ccCcCcCCCCcccccCcCeE
Confidence            456789999999999997432100               000000   00  01  11 34589999999999998854

>PRK05713 hypothetical protein; Provisional

Probab=97.34  E-value=0.00028  Score=66.61  Aligned_cols=52  Identities=29%  Similarity=0.512  Sum_probs=40.7

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE-----------------EeccccccccC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT-----------------NTVACLKPIDG  139 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~-----------------~~laC~t~v~~  139 (302)
                      .+|++.+ |.|||||+.+.|..      ...+|+.|.||+|.|.| .|.                 .+|+|.+.+..
T Consensus         9 ~~~~~~~-g~tlL~a~~~~gi~------~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~   78 (312)
T PRK05713          9 RRWSVPA-GSNLLDALNAAGVA------VPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVG   78 (312)
T ss_pred             eEEEECC-CCcHHHHHHHcCCC------CCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECC
Confidence            4567767 89999999998742      34569999999999998 342                 35899998874

>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific

Probab=97.34  E-value=1.8e-05  Score=61.13  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=17.5

Q ss_pred             hccccccCcccCcccCCCCCc
Q 045926          198 KLDGLYECILCACCTTSCPSY  218 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~  218 (302)
                      ...+..+|+.||.|+.+||..
T Consensus        16 ~~i~~~~Ci~C~~Cv~~CP~~   36 (91)
T TIGR02936        16 TSIDQEKCIGCGRCYKVCGRD   36 (91)
T ss_pred             EEECHhHCCCcchHHHHcChh
Confidence            345678899999999999954

Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=97.31  E-value=0.00043  Score=65.87  Aligned_cols=38  Identities=32%  Similarity=0.712  Sum_probs=30.5

Q ss_pred             EecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CC
Q 045926           83 VDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GG  127 (302)
Q Consensus        83 v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG  127 (302)
                      +.+++ |.|||+||++.|.      ....+|+.|+||+|.+.| .|
T Consensus       260 ~~~~~-~~~lL~~~~~~gi------~~~~~C~~G~Cg~C~~~~~~G  298 (332)
T PRK10684        260 FYAPV-GTTLLEALESNKV------PVVAACRAGVCGCCKTKVVSG  298 (332)
T ss_pred             EEeCC-CChHHHHHHHcCC------CccCCCCCcCCCCCEEEEecC
Confidence            34455 8999999999874      256789999999999987 44

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=97.30  E-value=0.00059  Score=65.31  Aligned_cols=52  Identities=25%  Similarity=0.587  Sum_probs=39.7

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE-------------------EeccccccccC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT-------------------NTVACLKPIDG  139 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~-------------------~~laC~t~v~~  139 (302)
                      ..+++.+ |.|||||+++.|.      ....+|+.|.||+|.+.| .|.                   .+|+|.+.+..
T Consensus        15 ~~~~~~~-g~tlL~a~~~~g~------~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~~   86 (340)
T PRK11872         15 LFFPVGK-DELLLDAALRNGI------NLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQTRVKS   86 (340)
T ss_pred             EEEEeCC-CCcHHHHHHHcCC------CCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEeeCEECC
Confidence            4556666 8999999999873      356679999999999987 332                   34899887753

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=97.29  E-value=0.00051  Score=65.39  Aligned_cols=52  Identities=21%  Similarity=0.444  Sum_probs=39.6

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE-------------------EeccccccccC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT-------------------NTVACLKPIDG  139 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~-------------------~~laC~t~v~~  139 (302)
                      ..+++.+ |.||||||++.|.      ....+|+.|.||+|.|.| .|.                   .+|+|.+.+..
T Consensus        12 ~~~~~~~-g~tlL~a~~~~gi------~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~~   83 (339)
T PRK07609         12 RQFTAEP-DETILDAALRQGI------HLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAKPLS   83 (339)
T ss_pred             eEEEeCC-CCcHHHHHHHcCC------CCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeCEECC
Confidence            3456666 8999999999874      256679999999999986 331                   24899888764

>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed

Probab=97.26  E-value=5.5e-05  Score=60.19  Aligned_cols=62  Identities=18%  Similarity=0.326  Sum_probs=36.8

Q ss_pred             HhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC
Q 045926          196 RKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK  275 (302)
Q Consensus       196 ~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~  275 (302)
                      .....+.+.|+.||.|+.+||+....               +..++.... ...   . ... ....|+.||.|+.+||.
T Consensus         9 ~~v~id~~~Ci~C~~Cv~aCP~~ai~---------------~~~~~~~~~-~~~---~-~~i-~~~~C~~C~~C~~~CP~   67 (103)
T PRK09626          9 TPVWVDESRCKACDICVSVCPAGVLA---------------MRIDPHAVL-GKM---I-KVV-HPESCIGCRECELHCPD   67 (103)
T ss_pred             CCeEECcccccCCcchhhhcChhhhc---------------ccccccccc-Cce---e-eEe-CCccCCCcCcchhhCCh
Confidence            34445778999999999999964311               000000000 000   0 011 23589999999999997


Q ss_pred             CCC
Q 045926          276 GLD  278 (302)
Q Consensus       276 gI~  278 (302)
                      ++-
T Consensus        68 ~AI   70 (103)
T PRK09626         68 FAI   70 (103)
T ss_pred             hhE
Confidence            654

>PRK06273 ferredoxin; Provisional

Probab=97.26  E-value=2.9e-05  Score=67.21  Aligned_cols=62  Identities=18%  Similarity=0.299  Sum_probs=35.4

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .+...|+.||.|..+||....... ..+|....       .+...   ...  .  .. ....|+.||.|..+||.++
T Consensus        46 id~~~CigCg~C~~aCP~~AI~~~-~~ep~~~~-------~~~~~---~~~--~--~I-d~~kCi~Cg~C~~aCP~~A  107 (165)
T PRK06273         46 VFEELCIGCGGCANVCPTKAIEMI-PVEPVKIT-------EGYVK---TKI--P--KI-DYEKCVYCLYCHDFCPVFA  107 (165)
T ss_pred             ECchhCcChhHHHHhcCccceeee-cccccchh-------ccccc---ccc--e--ec-ccccCcCCCCcchhCCHhh
Confidence            355689999999999997542100 00110000       00000   000  0  11 3468999999999999985

>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC

Probab=97.26  E-value=3.4e-05  Score=58.41  Aligned_cols=58  Identities=22%  Similarity=0.497  Sum_probs=34.9

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      .....|+.||.|+.+||+..+...    +.          ++...   ..+. .  .. ....|+.||.|.++||+++-
T Consensus         5 ~~~~~Ci~C~~Cv~~CP~~~i~~~----~~----------~~~~~---~~~~-~--~~-~~~~C~~Cg~C~~~CP~~ai   62 (80)
T TIGR03048         5 KIYDTCIGCTQCVRACPTDVLEMV----PW----------DGCKA---GQIA-S--AP-RTEDCVGCKRCESACPTDFL   62 (80)
T ss_pred             ecCCcCcCcchHHHHCCccceeee----cc----------ccccc---cccc-C--cC-CCCcCcChhHHHHhcCcccC
Confidence            446789999999999996432100    00          00000   0000 0  11 23589999999999999874

Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.

>COG1145 NapF Ferredoxin [Energy production and conversion]

Probab=97.25  E-value=0.00013  Score=56.34  Aligned_cols=54  Identities=22%  Similarity=0.369  Sum_probs=34.8

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .+..+||.||.|+.+||+....               ...+. +.     ....  .. ....|+.||.|..+||.++
T Consensus        26 ~~~~~Ci~Cg~C~~~CP~~ai~---------------~~~~~-~~-----~~~~--~~-~~~~C~~C~~C~~~Cp~~a   79 (99)
T COG1145          26 IDAEKCIGCGLCVKVCPTGAIE---------------LIEEG-LL-----LPEV--VI-DPDLCVLCGACLKVCPVDA   79 (99)
T ss_pred             eCccccCCCCCchhhCCHHHhh---------------ccccc-Cc-----cceE--EE-ccccCccccchHhhCCcCC
Confidence            4456799999999999975311               00000 00     0000  11 3468999999999999998

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=97.23  E-value=0.00072  Score=64.72  Aligned_cols=38  Identities=32%  Similarity=0.711  Sum_probs=30.4

Q ss_pred             EecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CC
Q 045926           83 VDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GG  127 (302)
Q Consensus        83 v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG  127 (302)
                      +++++ |.|||||+.+.|.      ....+|+.|+||+|.+.+ .|
T Consensus       277 ~~~~~-~~slL~~~~~~gi------~~~~~C~~G~Cg~C~~~~~~G  315 (352)
T TIGR02160       277 SSLSR-DESVLDAALRARP------DLPFACKGGVCGTCRAKVLEG  315 (352)
T ss_pred             EecCC-CCcHHHHHHHcCC------CCcCCCCCccCCCCEEEEecc
Confidence            34555 8999999999874      256689999999999986 44

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric

Probab=97.20  E-value=6.3e-05  Score=82.59  Aligned_cols=73  Identities=22%  Similarity=0.314  Sum_probs=38.5

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhH--HHHHHHhhhcccccccCcccccccccCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELT--EERLQALTEDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~--~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      .+..+||.||.|+.+||+.... ..++++..+..+-+. .+.++...  ..... ..-.. ..+.|+.||.|+.+||.+
T Consensus       680 ~~~~~Ci~Cg~C~~vCP~~ai~-~~~~~~~~~~~ap~~-~~~~~~~~~~~~~~~-~~i~i-~~~~C~gCg~Cv~~CP~~  754 (1165)
T TIGR02176       680 WVPDNCIQCNQCAFVCPHAAIR-PKLADEEELENAPAG-FKSLDAKGKELEGMK-FRIQI-SPLDCTGCGNCVDICPAK  754 (1165)
T ss_pred             eccccCCCccchHHhcChhhcc-ccccchhhhhcCccc-chhhhhhcccccccc-eeEEe-ccccCcCccchhhhcCCC
Confidence            4567899999999999987542 122233222111000 00000000  00000 00012 467999999999999997

This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.

>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed

Probab=97.20  E-value=6.1e-05  Score=62.88  Aligned_cols=51  Identities=24%  Similarity=0.466  Sum_probs=34.3

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ..+.+.|+.||.|+.+||.....                ..++.       .  .  .. ....|+.||.|+.+||.++
T Consensus        55 ~~d~~~Ci~C~~C~~~CP~~ai~----------------~~~~~-------~--~--~i-~~~~C~~Cg~Cv~vCP~~a  105 (133)
T PRK09625         55 VHNNEICINCFNCWVYCPDAAIL----------------SRDKK-------L--K--GV-DYSHCKGCGVCVEVCPTNP  105 (133)
T ss_pred             EEehhHCcChhhHHHhCCHhheE----------------ecCCc-------e--E--Ee-CcCcCcChhHHHHHCCcCc
Confidence            45678999999999999943210                00100       0  0  01 2357999999999999996

>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only

Probab=97.20  E-value=9e-05  Score=72.00  Aligned_cols=77  Identities=16%  Similarity=0.338  Sum_probs=42.2

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHH-HhhhcccccccCcccccccccCCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQ-ALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~-~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      .+..+|+.||+|+.+||......           ..+...++..    .++. ...... ....|+.||.|+.+||.++-
T Consensus         4 id~~kCi~Cg~Cv~~CP~~ai~~-----------~~~~~~~~~~----~~~~~~~~~~i-d~~~C~~Cg~Cv~~CP~~Ai   67 (374)
T TIGR02512         4 RDMSKCIGCGRCVRACTNVQIVG-----------ALGFLNRGGK----TEVAPKFGRLL-DESNCIGCGQCSLVCPVGAI   67 (374)
T ss_pred             echhhCCcChHhhhhCCHhhccc-----------cccccccCCc----ccccccccccc-CcccCcCccCHHHhCCCChh
Confidence            45678999999999999754210           0000000000    0000 000011 34589999999999999876


Q ss_pred             HH-HHHHHHHHHHhh
Q 045926          279 PA-DAIHKMKTKHML  292 (302)
Q Consensus       279 ~~-~~I~~lR~~l~~  292 (302)
                      .. ..+..+.+.+.+
T Consensus        68 ~~~~~~~~v~~~l~~   82 (374)
T TIGR02512        68 TEKDHVDRVLKALAD   82 (374)
T ss_pred             hhhccHHHHHHHhcc
Confidence            32 334444444433

This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=97.18  E-value=0.00072  Score=66.26  Aligned_cols=67  Identities=18%  Similarity=0.357  Sum_probs=47.5

Q ss_pred             ccceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCC-CccCccEEEEC-CE----
Q 045926           55 VKKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCRE-GICGSCAMNIG-GT----  128 (302)
Q Consensus        55 ~~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~-g~CG~C~V~Vn-G~----  128 (302)
                      |++.+++|.+..  .+         .+.+++.+ |.|||+|+++.|..      ...+|+. |.||+|.|.|- |.    
T Consensus        27 ~~~~~v~v~~~~--~~---------~~~~~~~~-g~tlL~a~~~~gi~------i~~~C~g~G~Cg~C~v~v~~G~~~~~   88 (405)
T TIGR01941        27 VSSGDITIGIND--DE---------EKSITVPA-GGKLLNTLASNGIF------ISSACGGGGTCGQCRVRVVEGGGEIL   88 (405)
T ss_pred             cccccEEEEEcC--CC---------ceEEEECC-CChHHHHHHHcCCC------CcccCCCccEeCCCEEEEccCCcCCC
Confidence            555667776632  22         25677777 99999999998742      3446985 89999999983 41    


Q ss_pred             ---------------EeccccccccC
Q 045926          129 ---------------NTVACLKPIDG  139 (302)
Q Consensus       129 ---------------~~laC~t~v~~  139 (302)
                                     .+|||.+.+..
T Consensus        89 ~~~~~~L~~~~~~~g~rLaCq~~~~~  114 (405)
T TIGR01941        89 PTELSHFSKREAKEGWRLSCQVKVKQ  114 (405)
T ss_pred             hhhhhhcCHhHhcCCcEEEeeCEECC
Confidence                           26899988764

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PLN00071 photosystem I subunit VII; Provisional

Probab=97.15  E-value=5.4e-05  Score=57.37  Aligned_cols=57  Identities=21%  Similarity=0.483  Sum_probs=33.9

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ...+|+.||.|+.+||.......          .    .++..   ...+. .  .. ....|+.||.|+.+||.++-
T Consensus         7 ~~~~C~~C~~C~~~CP~~~i~~~----------~----~~~~~---~~~~~-~--~~-~~~~C~~Cg~C~~~CP~~Ai   63 (81)
T PLN00071          7 IYDTCIGCTQCVRACPTDVLEMI----------P----WDGCK---AKQIA-S--AP-RTEDCVGCKRCESACPTDFL   63 (81)
T ss_pred             cCCcCcChhHHHHHCCccceeee----------c----ccccc---ccccc-C--cC-CCCcCcChhhHHhhcCCccc
Confidence            45689999999999995431100          0    00000   00000 0  01 23579999999999999864

>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional

Probab=97.13  E-value=8.4e-05  Score=65.00  Aligned_cols=57  Identities=30%  Similarity=0.495  Sum_probs=35.5

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ..+..+|+.||.|+.+||.......               .+....  ...   +  .. ....|+.||.|+.+||.++-
T Consensus        34 ~~d~~~C~~C~~Cv~~CP~~ai~~~---------------~~~~~~--~~~---~--~i-~~~~C~~Cg~C~~vCP~~AI   90 (180)
T PRK12387         34 EYNPQQCIGCAACVNACPSNALTVE---------------TDLATG--ELA---W--EF-NLGRCIFCGRCEEVCPTAAI   90 (180)
T ss_pred             EEChhhCcChhHHHHhcCccCeEee---------------ccccCC--ccc---c--ee-ccccCcCccchhhhcCcCce
Confidence            3467899999999999996432100               000000  000   0  11 34589999999999998753

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=97.13  E-value=0.00013  Score=71.87  Aligned_cols=55  Identities=24%  Similarity=0.465  Sum_probs=33.7

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC-CC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK-GL  277 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~-gI  277 (302)
                      .+.++|+.||.|..+||....            .+..+..++..     .   .  .. ....|+.||.|+.+||. ++
T Consensus       339 ~~~~~C~~C~~C~~~Cp~~~~------------~ai~~~~~~~~-----~---~--~i-~~~~C~~Cg~C~~~CP~~~A  394 (420)
T PRK08318        339 IDQDKCIGCGRCYIACEDTSH------------QAIEWDEDGTR-----T---P--EV-IEEECVGCNLCAHVCPVEGC  394 (420)
T ss_pred             ECHHHCCCCCcccccCCCcch------------hheeeccCCCc-----e---E--Ee-chhhCcccchHHhhCCCCCC
Confidence            456799999999999995310            01100001100     0   0  01 23479999999999999 65

>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family

Probab=97.12  E-value=9.7e-05  Score=69.00  Aligned_cols=57  Identities=26%  Similarity=0.546  Sum_probs=36.3

Q ss_pred             hhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926          197 KKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       197 ~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      ....+..+|+.||.|+.+||.....             +.+..++..     .   .  .. ....|..||.|+.+||++
T Consensus        42 ~~~~~~~~C~~C~~C~~~Cp~~a~~-------------~~~~~~~~~-----~---~--~~-~~~~C~~Cg~C~~~CP~~   97 (295)
T TIGR02494        42 ELLFKENRCLGCGKCVEVCPAGTAR-------------LSELADGRN-----R---I--II-RREKCTHCGKCTEACPSG   97 (295)
T ss_pred             eEEEccccCCCCchhhhhCcccccc-------------cccccCCCc-----c---e--ee-chhhcCchhHhhccCcHh
Confidence            3456778999999999999964310             000011100     0   0  11 345899999999999976


Q ss_pred             C
Q 045926          277 L  277 (302)
Q Consensus       277 I  277 (302)
                      +
T Consensus        98 A   98 (295)
T TIGR02494        98 A   98 (295)
T ss_pred             H
Confidence            4

This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0

>PRK06991 ferredoxin; Provisional

Probab=97.06  E-value=0.00013  Score=67.82  Aligned_cols=50  Identities=20%  Similarity=0.440  Sum_probs=33.4

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      ..+.+.||.||.|+.+||+....                 ..+..      +..    . ....|+.||.|+.+||++
T Consensus        81 ~id~~~CigCg~Cv~aCP~~AI~-----------------~~~~~------~~~----v-~~~~CigCg~Cv~vCP~~  130 (270)
T PRK06991         81 VIDEQLCIGCTLCMQACPVDAIV-----------------GAPKQ------MHT----V-LADLCTGCDLCVPPCPVD  130 (270)
T ss_pred             EEccccCCCCcHHHHhCCHhhee-----------------ccccc------cee----e-CHhhCCCchHHHhhCCcC
Confidence            34567999999999999954310                 00000      000    1 234799999999999988

>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family

Probab=97.05  E-value=0.00015  Score=66.89  Aligned_cols=52  Identities=15%  Similarity=0.251  Sum_probs=33.5

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      +.++|+.|+.|..+||+.....              ..... ++    ..     .. ....|+.||+|+++||+++
T Consensus       199 ~~~~C~~C~~C~~vCP~~~vl~--------------~~~~~-~~----~~-----~i-~~~~C~~Cg~Cv~~CP~~A  250 (255)
T TIGR02163       199 DREKCTNCMDCFNVCPEPQVLR--------------MPLKK-GG----ST-----LV-LSGDCTLCGRCIDVCHEDV  250 (255)
T ss_pred             ccccCeEcCCccCcCCCCceee--------------ccccC-CC----ce-----Ee-ccccccchhHHHHhCCccc
Confidence            3689999999999999643100              00000 00    00     01 2357999999999999986

Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=97.05  E-value=0.0011  Score=65.07  Aligned_cols=66  Identities=20%  Similarity=0.379  Sum_probs=46.6

Q ss_pred             cceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCC-CccCccEEEE-CCE-----
Q 045926           56 KKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCRE-GICGSCAMNI-GGT-----  128 (302)
Q Consensus        56 ~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~-g~CG~C~V~V-nG~-----  128 (302)
                      ...+++|+|..   ..        ..++++.+ |.|||||+++.+..      ...+|+. |.||+|.|.| .|.     
T Consensus        32 ~~~~~~i~~~~---~~--------~~~~~~~~-g~tLL~a~~~~gi~------i~~~C~g~G~CgtC~v~v~~G~~~~~~   93 (409)
T PRK05464         32 PSGDVTIKING---DP--------EKTITVPA-GGKLLGALASNGIF------LSSACGGGGSCGQCRVKVKEGGGDILP   93 (409)
T ss_pred             cCccEEEEEcC---CC--------cEEEEECC-CchHHHHHHHcCCC------cccCCCCccEeCCCEEEEecCCcCCCh
Confidence            34567777643   11        14566777 99999999998742      3456995 9999999997 452     


Q ss_pred             --------------EeccccccccC
Q 045926          129 --------------NTVACLKPIDG  139 (302)
Q Consensus       129 --------------~~laC~t~v~~  139 (302)
                                    .+|||.+.+..
T Consensus        94 ~e~~~l~~~e~~~g~rLaCq~~~~~  118 (409)
T PRK05464         94 TELSHISKREAKEGWRLSCQVKVKQ  118 (409)
T ss_pred             hhhhhcCHhhccCCcEEEeeCEECC
Confidence                          25799987764

>PF13484 Fer4_16: 4Fe-4S double cluster binding domain

Probab=97.04  E-value=0.00012  Score=53.21  Aligned_cols=17  Identities=35%  Similarity=0.858  Sum_probs=15.0

Q ss_pred             cCcccCcccCCCCCccc
Q 045926          204 ECILCACCTTSCPSYWW  220 (302)
Q Consensus       204 ~CI~CG~C~~aCP~~~~  220 (302)
                      .|+.||+|+.+||+...
T Consensus         1 ~C~~C~~C~~~CP~~AI   17 (67)
T PF13484_consen    1 FCITCGKCAEACPTGAI   17 (67)
T ss_pred             CCcchhHHHHhCcHhhc
Confidence            49999999999998764

>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed

Probab=97.02  E-value=0.00012  Score=58.59  Aligned_cols=50  Identities=18%  Similarity=0.319  Sum_probs=33.5

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .+..+|+.|+.|+.+||.....               ...++.          .  .. ....|+.||.|+.+||.++
T Consensus        48 ~d~~~Ci~C~~C~~~CP~~ai~---------------~~~~~~----------~--~i-d~~~C~~Cg~Cv~~CP~~A   97 (105)
T PRK09624         48 FNRDKCVRCYLCYIYCPEPAIY---------------LDEEGY----------P--VF-DYDYCKGCGICANECPTKA   97 (105)
T ss_pred             EChhHCcChhhHHhhCCHhhEE---------------ecCCCc----------E--EE-CchhCCCcCchhhhcCcCc
Confidence            4567899999999999953210               000000          0  01 2347999999999999876

>PRK08764 ferredoxin; Provisional

Probab=96.97  E-value=0.00022  Score=59.61  Aligned_cols=48  Identities=21%  Similarity=0.493  Sum_probs=32.6

Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .++||.||+|+.+||...+.                 .+.+.      ..    .. ....|+.||.|+.+||+++
T Consensus        84 ~~~Ci~C~~Cv~aCp~~ai~-----------------~~~~~------~~----~v-~~~~C~~Cg~Cv~~CP~~A  131 (135)
T PRK08764         84 EADCIGCTKCIQACPVDAIV-----------------GGAKH------MH----TV-IAPLCTGCELCVPACPVDC  131 (135)
T ss_pred             cccCcCcchHHHhCChhhcC-----------------ccCCC------ce----ee-cCCcCcCccchhhhcCccc
Confidence            36899999999999953210                 01100      00    01 2357999999999999986

>PRK09477 napH quinol dehydrogenase membrane component; Provisional

Probab=96.96  E-value=0.00021  Score=66.49  Aligned_cols=55  Identities=16%  Similarity=0.357  Sum_probs=34.8

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      .+.++|+.|+.|..+||+....     .|.         ..+.+.    .   .  .. ....|+.||+|+++||+++-
T Consensus       205 ~d~~~C~~C~~C~~~CP~~~i~-----~~~---------~~~~~~----~---~--~i-~~~~C~~Cg~Cv~~CP~~Ai  259 (271)
T PRK09477        205 HDRQKCTRCMDCFHVCPEPQVL-----RPP---------LKGKQS----P---S--QV-TSGDCITCGRCIDVCSEDVF  259 (271)
T ss_pred             CCcccCcccCCcCCcCCCccee-----ccc---------ccCCCc----c---c--ee-CcccCcChhHHHhhcCccce
Confidence            4667899999999999964311     000         001000    0   0  01 23579999999999999763

>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed

Probab=96.92  E-value=0.00023  Score=56.98  Aligned_cols=52  Identities=19%  Similarity=0.381  Sum_probs=34.4

Q ss_pred             hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...+.++|+.|+.|+.+||....               .+..++.          .  .. ....|..||.|+.+||.++
T Consensus        46 p~i~~~~Ci~C~~C~~~CP~~ai---------------~~~~~~~----------~--~i-d~~~C~~Cg~Cv~~CP~~A   97 (105)
T PRK09623         46 PVVDESKCVKCYICWKFCPEPAI---------------YIKEDGY----------V--AI-DYDYCKGCGICANECPTKA   97 (105)
T ss_pred             EEECcccCccccchhhhCCHhhe---------------EecCCCc----------E--Ee-CchhCcCcchhhhhcCcCc
Confidence            34567899999999999995221               0000110          0  01 2357999999999999876

>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=96.90  E-value=0.00027  Score=36.94  Aligned_cols=15  Identities=33%  Similarity=1.008  Sum_probs=13.8

Q ss_pred             CcccccccccCCCCC
Q 045926          263 CRAIKNCTATCPKGL  277 (302)
Q Consensus       263 C~~Cg~C~~vCP~gI  277 (302)
                      |+.|+.|+++||+++
T Consensus         1 C~~C~~C~~~Cp~~A   15 (15)
T PF12798_consen    1 CTGCGACVEVCPTGA   15 (15)
T ss_pred             CCCchHHHHHhcCCC
Confidence            889999999999985

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding

>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]

Probab=96.89  E-value=0.00031  Score=62.63  Aligned_cols=60  Identities=25%  Similarity=0.449  Sum_probs=43.5

Q ss_pred             hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCccc------c---c
Q 045926          198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAI------K---N  268 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~C------g---~  268 (302)
                      ...+.+.||.||.|+.+||...-    ++             +.              +....+.|++|      |   .
T Consensus        95 V~vd~d~CIGC~yCi~ACPyga~----~~-------------~~--------------~~~~~~KCt~C~~ri~~g~~Pa  143 (203)
T COG0437          95 VLVDKDLCIGCGYCIAACPYGAP----QF-------------NP--------------DKGVVDKCTFCVDRVAVGKLPA  143 (203)
T ss_pred             EEecCCcccCchHHHhhCCCCCc----ee-------------Cc--------------ccCcccccCcchhhHhcCCCCc
Confidence            34567899999999999995431    11             11              01036789999      8   9


Q ss_pred             ccccCCCCCCHHHHHHHHHH
Q 045926          269 CTATCPKGLDPADAIHKMKT  288 (302)
Q Consensus       269 C~~vCP~gI~~~~~I~~lR~  288 (302)
                      |+++||+++-.-.-|.+++.
T Consensus       144 CV~~CP~~A~~fG~~~d~~~  163 (203)
T COG0437         144 CVEACPTGALIFGDIDDPKS  163 (203)
T ss_pred             ccccCCcccccccchhhcch
Confidence            99999999987666777665

>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit

Probab=96.89  E-value=0.00014  Score=62.82  Aligned_cols=52  Identities=21%  Similarity=0.453  Sum_probs=34.9

Q ss_pred             hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...+.++|+.||+|+.+||.....                 .+.+.      ..    .. ....|+.||.|+.+||+++
T Consensus       108 ~~id~~~Ci~Cg~C~~aCp~~ai~-----------------~~~~~------~~----~i-~~~~C~~Cg~Cv~~CP~~A  159 (165)
T TIGR01944       108 ALIDEDNCIGCTKCIQACPVDAIV-----------------GAAKA------MH----TV-IADECTGCDLCVEPCPTDC  159 (165)
T ss_pred             EEEECCcCCChhHHHHhCCccceE-----------------ecCCC------ce----Ee-ecccccChhHHHHhcCcCc
Confidence            455678999999999999953210                 01000      00    01 2357999999999999986

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.

>COG1146 Ferredoxin [Energy production and conversion]

Probab=96.85  E-value=0.00044  Score=50.74  Aligned_cols=52  Identities=23%  Similarity=0.587  Sum_probs=33.8

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      +..+|+.||.|+.+||...+..    +...         +++         .+  .. ....|+.||.|..+||+++
T Consensus         6 d~~~C~~c~~C~~~CP~~~~~~----~~~~---------~~~---------~~--~~-~~e~C~~C~~C~~~CP~~a   57 (68)
T COG1146           6 DYDKCIGCGICVEVCPAGVFDL----GEDE---------GGK---------PV--VA-RPEECIDCGLCELACPVGA   57 (68)
T ss_pred             CchhcCCCChheeccChhhEEe----cccc---------Ccc---------ee--Ee-ccccCccchhhhhhCCcce
Confidence            4456999999999999754210    0000         010         01  11 4568999999999999984

>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family

Probab=96.81  E-value=0.00021  Score=53.53  Aligned_cols=51  Identities=20%  Similarity=0.307  Sum_probs=34.1

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ..+...|+.|+.|+.+||.....               +..++..            .. ....|+.|+.|+.+||.++
T Consensus        21 ~i~~~~C~~C~~C~~~Cp~~ai~---------------~~~~~~~------------~i-~~~~C~~C~~C~~~CP~~A   71 (78)
T TIGR02179        21 VVDKEKCIKCKNCWLYCPEGAIQ---------------EDEGGFV------------GI-DYDYCKGCGICANVCPVKA   71 (78)
T ss_pred             EEcCCcCcChhHHHhhcCccceE---------------ecCCCcE------------Ee-cCccCcCccchhhhCCccc
Confidence            44567899999999999954311               0000000            01 2347999999999999976

A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.

>TIGR00402 napF ferredoxin-type protein NapF

Probab=96.78  E-value=0.00024  Score=56.36  Aligned_cols=53  Identities=15%  Similarity=0.332  Sum_probs=34.2

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      .....|+.|+.|+.+||.......               .++..     .   +  .. ....|+.||.|..+||+++-
T Consensus        31 ~~~~~C~~C~~C~~~CP~~~i~~~---------------~~g~~-----~---~--~i-~~~~C~~Cg~C~~~CP~~Ai   83 (101)
T TIGR00402        31 LFSAVCTRCGECASACENNILQLG---------------QQGQP-----T---V--EF-DNAECDFCGKCAEACPTNAF   83 (101)
T ss_pred             cCcCcCcChhHHHHHcCcccceec---------------cCCce-----e---e--Ee-cCccCcCccChhhHCCcccc
Confidence            345689999999999996432100               01100     0   0  01 23479999999999999874

The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.

>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=96.75  E-value=0.00033  Score=40.23  Aligned_cols=20  Identities=35%  Similarity=0.876  Sum_probs=17.2

Q ss_pred             hccccccCcccCcccCCCCC
Q 045926          198 KLDGLYECILCACCTTSCPS  217 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~  217 (302)
                      .+.|.++||.|+.|+.+||+
T Consensus         3 ~~iD~~rCiGC~~C~~AC~~   22 (22)
T PF12797_consen    3 MVIDLERCIGCGACEVACPV   22 (22)
T ss_pred             eEEccccccCchhHHHhhCc
Confidence            35678899999999999984

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding

>TIGR02912 sulfite_red_C sulfite reductase, subunit C

Probab=96.74  E-value=0.00022  Score=67.70  Aligned_cols=53  Identities=21%  Similarity=0.453  Sum_probs=34.4

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      .+...|+.||.|+.+||....            .+..+ .+..          +  .. ....|+.||.|+.+||+++-
T Consensus       166 ~d~~~C~~Cg~C~~~Cp~~a~------------~ai~~-~~~~----------~--~i-d~~~C~~Cg~Cv~~CP~~Al  218 (314)
T TIGR02912       166 YDADRCIGCGACVKVCKKKAV------------GALSF-ENYK----------V--VR-DHSKCIGCGECVLKCPTGAW  218 (314)
T ss_pred             eeCccCCcchHHHHhcChhhc------------Cceec-cCCe----------E--Ee-CCCcCcCcchhhhhCCHhhc
Confidence            456789999999999995321            00000 1110          0  01 34589999999999998743

Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.

>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]

Probab=96.73  E-value=0.0029  Score=60.93  Aligned_cols=95  Identities=20%  Similarity=0.386  Sum_probs=64.4

Q ss_pred             ceeEEEEEEecCCCCCCCCCceeEEEE-ecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEEC----C---
Q 045926           57 KVMKEFRIYRWNPDRPDSKPFLQSYHV-DLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIG----G---  127 (302)
Q Consensus        57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v-~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~Vn----G---  127 (302)
                      +.++.|.+++            +...+ ++.+ ..||||-|+. .+.     -..+.+|-+|.||.|+|.|.    |   
T Consensus         6 ~~~irf~lN~------------~~~~l~~v~P-~~TlLd~LR~d~~l-----tGtKEGCAEGDCGACTVlVgrl~~g~~l   67 (493)
T COG4630           6 RNTIRFLLNG------------ETRVLSDVPP-TTTLLDYLRLDRRL-----TGTKEGCAEGDCGACTVLVGRLVDGGSL   67 (493)
T ss_pred             cceeEEEecC------------ceEEeecCCc-chHHHHHHHHhccc-----ccccccccCCCcCceEEEEEeecCCCce
Confidence            3467777776            22333 3455 7999999984 221     24677899999999999883    3   


Q ss_pred             --EEeccccccccCCC-CCceEEccCCC-----chhhhhhhhccchhhhhc
Q 045926          128 --TNTVACLKPIDGDT-SKPTIITPLPH-----MFVIKDLVVDLTNFYQQY  170 (302)
Q Consensus       128 --~~~laC~t~v~~~~-~~~~~Iepl~~-----~~vikDLvvD~~~~~~~~  170 (302)
                        +.+.||...+.... ++.+|||.|+.     +|| +.-+||.+.--+.|
T Consensus        68 ~yeSVNACirfl~sL~G~hvvTvE~L~~~~g~LHpV-Qqamvd~hGSQCGf  117 (493)
T COG4630          68 RYESVNACIRFLGSLDGTHVVTVEHLRGQDGTLHPV-QQAMVDFHGSQCGF  117 (493)
T ss_pred             eeeehhHHHHHHhhcCCceEEEehhhcCCCCCcCHH-HHHHHhccCCccCC
Confidence              25579999998754 46789999984     444 44456776654443

>PRK10194 ferredoxin-type protein; Provisional

Probab=96.69  E-value=0.00032  Score=60.29  Aligned_cols=18  Identities=28%  Similarity=0.754  Sum_probs=15.4

Q ss_pred             ccccCcccCcccCCCCCc
Q 045926          201 GLYECILCACCTTSCPSY  218 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~  218 (302)
                      ....|+.||.|+.+||..
T Consensus        32 ~~~~C~~Cg~C~~aCp~~   49 (163)
T PRK10194         32 FLTHCTRCDACINACENN   49 (163)
T ss_pred             HhhhCcChhHHHHHcChh
Confidence            356899999999999964

>PRK09326 F420H2 dehydrogenase subunit F; Provisional

Probab=96.57  E-value=0.00056  Score=65.66  Aligned_cols=61  Identities=21%  Similarity=0.423  Sum_probs=34.9

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      +.+...|+.||.|..+||.....-...  .        ...++..      +....... ..+.|+.||.|..+||..
T Consensus         8 vi~~~~C~gCg~C~~~CP~~aI~~~~~--~--------~~~~~~~------~~~~~~~~-d~~~C~~Cg~C~~vCP~~   68 (341)
T PRK09326          8 VIEYDVCTACGACEAVCPIGAITVDKK--A--------EIRDPND------LELYEKGA-APNVCEGCLTCSRICPVV   68 (341)
T ss_pred             EECcccCcChHHHHHhCCHhhhecccC--c--------ccccccc------hhhhccCC-CcCcCcCcCchhhhCCCC
Confidence            455678999999999999643210000  0        0000000      00011111 457899999999999973

>PRK10882 hydrogenase 2 protein HybA; Provisional

Probab=96.50  E-value=0.0011  Score=63.35  Aligned_cols=66  Identities=18%  Similarity=0.414  Sum_probs=43.2

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCccccc----------
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKN----------  268 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~----------  268 (302)
                      ..+..+|+.|+.|+.+||....               ++..+..             .. .+..|.+|+.          
T Consensus       139 ~id~dkCigCg~Cv~aCP~gai---------------~~~~~~~-------------~~-~~~KC~~C~~~~~~R~~~G~  189 (328)
T PRK10882        139 HYDKDVCTGCRYCMVACPFNVP---------------KYDYNNP-------------FG-AIHKCELCNQKGVERLDKGG  189 (328)
T ss_pred             cCCHHHcCcccHHHHhCCccce---------------ecccccc-------------cc-ceeecccccccchhhhhcCC
Confidence            3456788999999999984321               0000100             01 3568999999          


Q ss_pred             ---ccccCCCCCC----HHHHHHHHHHHHhhc
Q 045926          269 ---CTATCPKGLD----PADAIHKMKTKHMLS  293 (302)
Q Consensus       269 ---C~~vCP~gI~----~~~~I~~lR~~l~~~  293 (302)
                         |+.+||+++-    ..+++..+++.+...
T Consensus       190 ~PACv~aCP~gAi~fG~~~el~~~a~~ri~~~  221 (328)
T PRK10882        190 LPGCVEVCPTGAVIFGTREELLAEAKRRLALK  221 (328)
T ss_pred             CChhhhhccccceEeccHHHHHHHHHHHHHhc
Confidence               9999998775    566777777666553

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=96.47  E-value=0.00043  Score=64.09  Aligned_cols=49  Identities=18%  Similarity=0.394  Sum_probs=33.4

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      +..+|+.||.|..+|+.....               ++.++..         .   . ..+.|..||.|..+||.++
T Consensus        67 ~~e~C~~CG~C~~vC~f~Ai~---------------~~~~~~~---------~---~-~~~lC~GCgaC~~~CP~~A  115 (284)
T COG1149          67 DPEKCIRCGKCAEVCRFGAIV---------------VLPGGKP---------V---L-NPDLCEGCGACSIVCPEPA  115 (284)
T ss_pred             ChhhccccCcHHHhCCCCeEE---------------EcCCCce---------e---c-CcccccCcccceeeCCCcc
Confidence            456799999999999954310               0011100         0   1 3578999999999999884

>PRK09898 hypothetical protein; Provisional

Probab=96.42  E-value=0.0014  Score=58.50  Aligned_cols=49  Identities=29%  Similarity=0.635  Sum_probs=34.3

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ..+...||.|+.|+.+||.....                 .+...             . ....|+.||.|+++||+++-
T Consensus       150 ~vd~~~CigC~~C~~aCP~~ai~-----------------~~~~~-------------~-~~~kC~~Cg~Cv~~CP~~Ai  198 (208)
T PRK09898        150 TVDHKRCIGCSACTTACPWMMAT-----------------VNTES-------------K-KSSKCVLCGECANACPTGAL  198 (208)
T ss_pred             EeccccCCCcCcccccCCCCCCE-----------------ecCCC-------------C-cCCcCcChHHHHHhCCcccE
Confidence            34567899999999999963210                 11100             0 23589999999999999864

>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein

Probab=96.25  E-value=0.0026  Score=57.64  Aligned_cols=60  Identities=18%  Similarity=0.423  Sum_probs=38.6

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc----------cc
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK----------NC  269 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg----------~C  269 (302)
                      .+..+|+.||.|..+||....    +             .++.             .. ....|++|+          +|
T Consensus       122 id~~~C~~C~~C~~aCP~~A~----~-------------~~~~-------------~~-~~~kC~~C~~~~~~~g~~P~C  170 (225)
T TIGR03149       122 VHKDLCVGCQYCIAACPYRVR----F-------------IHPV-------------TK-SADKCNFCRDTNLAEGKLPAC  170 (225)
T ss_pred             echhhCCcchHHHHhCCCCCc----E-------------ecCC-------------CC-ccccCCCCCcchhhCCCCCcc
Confidence            455789999999999996431    0             0110             01 345899999          89


Q ss_pred             cccCCCCCC----HHHHHHHHHHHH
Q 045926          270 TATCPKGLD----PADAIHKMKTKH  290 (302)
Q Consensus       270 ~~vCP~gI~----~~~~I~~lR~~l  290 (302)
                      +++||+++-    ..+...++.+.+
T Consensus       171 v~~Cp~~Ai~f~~~~~~~~~~~~~~  195 (225)
T TIGR03149       171 VESCPTKALTFGDLNDPNSEVSQKL  195 (225)
T ss_pred             cccCccCCEEEecccccHHHHHHHH
Confidence            999998765    333344444444

Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.

>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]

Probab=96.10  E-value=0.014  Score=63.16  Aligned_cols=76  Identities=20%  Similarity=0.322  Sum_probs=56.3

Q ss_pred             EEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEECC-----E----E
Q 045926           60 KEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIGG-----T----N  129 (302)
Q Consensus        60 ~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~VnG-----~----~  129 (302)
                      +.|.|++            +.|+++.-++.+||+..||+ ++-     -+...+|.+|-||+|+|.|-.     +    .
T Consensus         3 l~F~VNG------------~~~~~~~vdP~~TL~~fLR~k~~l-----tgtKlgC~EGGCGaCtv~ls~~dp~~~~~~~a   65 (1257)
T KOG0430|consen    3 LVFAING------------KRVEVELLPPDLTLNTFLREKLGL-----TGTKLGCGEGGCGACTVVLSKYDPELKVRHWA   65 (1257)
T ss_pred             eEEEECC------------EEeeEecCCcchhHHHHHHHhcCC-----cceeeccCCCCccceEEEEeccCCCceeEEee
Confidence            4577777            44666665558999999996 221     135568999999999999876     2    4


Q ss_pred             eccccccccCCCC-CceEEccCCC
Q 045926          130 TVACLKPIDGDTS-KPTIITPLPH  152 (302)
Q Consensus       130 ~laC~t~v~~~~~-~~~~Iepl~~  152 (302)
                      +-||.|++-...+ ..+|+|.|.+
T Consensus        66 vNsCLt~l~s~~g~~VtT~EGlGn   89 (1257)
T KOG0430|consen   66 VNSCLTLLNSVHGLEVTTSEGLGN   89 (1257)
T ss_pred             hhhhhhhcccccceEEEeeecccc
Confidence            4699999987544 5678999886

>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=96.02  E-value=0.0037  Score=33.65  Aligned_cols=15  Identities=40%  Similarity=1.154  Sum_probs=13.7

Q ss_pred             ccCcccCcccCCCCC
Q 045926          203 YECILCACCTTSCPS  217 (302)
Q Consensus       203 ~~CI~CG~C~~aCP~  217 (302)
                      +.||.|+.|+.+||+
T Consensus         2 ~~C~~C~~C~~~Cp~   16 (17)
T PF12800_consen    2 ERCIGCGSCVDVCPT   16 (17)
T ss_dssp             CCCTTSSSSTTTSTT
T ss_pred             CcCCCCchHHhhccC
Confidence            579999999999995

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.

>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=95.99  E-value=0.0016  Score=38.34  Aligned_cols=18  Identities=28%  Similarity=0.811  Sum_probs=15.8

Q ss_pred             cccCcccccccccCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...|+.||.|+.+||.++
T Consensus         6 ~~~C~~Cg~C~~~Cp~~a   23 (24)
T PF12837_consen    6 PDKCIGCGDCVRVCPEGA   23 (24)
T ss_pred             hhhCcChhHHHHhcchhc
Confidence            458999999999999875

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein

Probab=95.97  E-value=0.002  Score=63.41  Aligned_cols=51  Identities=29%  Similarity=0.617  Sum_probs=34.6

Q ss_pred             hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .+.+...|+.|+.|+.+||.....                 .+...      .  .   . ....|..|+.|..+||.++
T Consensus         5 ~~id~~~Ci~C~~C~~~CP~~ai~-----------------~~~~~------~--~---i-~~~~C~~C~~C~~~CP~~A   55 (411)
T TIGR03224         5 HLIDPEICIRCNTCEETCPIDAIT-----------------HDDRN------Y--V---V-KADVCNGCMACVSPCPTGA   55 (411)
T ss_pred             eeeCcccCcCccchhhhCCcccEe-----------------ccCCc------e--E---e-CcccCcCHHHHHhhcCccc
Confidence            345677899999999999964311                 01100      0  0   1 2347999999999999875

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.

>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit

Probab=95.94  E-value=0.0013  Score=54.83  Aligned_cols=53  Identities=23%  Similarity=0.437  Sum_probs=34.2

Q ss_pred             cccccCcccC-----cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCC
Q 045926          200 DGLYECILCA-----CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCP  274 (302)
Q Consensus       200 ~~~~~CI~CG-----~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP  274 (302)
                      .+..+|+.||     .|+.+||.....                 .+....    .  ..  .. ....|+.||.|+.+||
T Consensus         5 v~~~~C~gC~~~~~~~Cv~~CP~~ai~-----------------~~~~~~----~--~~--~i-d~~~C~~Cg~Cv~~CP   58 (132)
T TIGR02060         5 VYPTKCDGCKAGEKTACVYICPNDLMH-----------------LDTEIM----K--AY--NI-EPDMCWECYSCVKACP   58 (132)
T ss_pred             EccccccCccCCchhcCHhhcCccceE-----------------ecCCCc----e--ee--ec-CchhCccHHHHHHhCC
Confidence            4567899999     999999964310                 010000    0  00  01 2357999999999999


Q ss_pred             CCCC
Q 045926          275 KGLD  278 (302)
Q Consensus       275 ~gI~  278 (302)
                      .++-
T Consensus        59 ~~AI   62 (132)
T TIGR02060        59 QGAI   62 (132)
T ss_pred             cCce
Confidence            8764

During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.

>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=95.92  E-value=0.0013  Score=38.64  Aligned_cols=18  Identities=33%  Similarity=0.776  Sum_probs=15.8

Q ss_pred             cccccCcccCcccCCCCC
Q 045926          200 DGLYECILCACCTTSCPS  217 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~  217 (302)
                      .+.++|+.||.|+.+||.
T Consensus         4 id~~~C~~Cg~C~~~Cp~   21 (24)
T PF12837_consen    4 IDPDKCIGCGDCVRVCPE   21 (24)
T ss_pred             EChhhCcChhHHHHhcch
Confidence            456789999999999996

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=95.89  E-value=0.011  Score=62.43  Aligned_cols=31  Identities=32%  Similarity=0.740  Sum_probs=24.4

Q ss_pred             CcccccCCCCCccCccEEEECCEEecccccc
Q 045926          106 SLSYRRSCREGICGSCAMNIGGTNTVACLKP  136 (302)
Q Consensus       106 tL~~~~~C~~g~CG~C~V~VnG~~~laC~t~  136 (302)
                      +|.-+-.|..|+||+|.|.+.|...+.|..-
T Consensus       210 Sle~~M~CG~G~C~~C~v~~~~~~~~~C~dG  240 (752)
T PRK12778        210 SLNTIMVDGTGMCGACRVTVGGKTKFACVDG  240 (752)
T ss_pred             eCcccccCcccccCcceeEeCCCeEEEECCC
Confidence            4555567999999999999988656888754

>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=95.87  E-value=0.0028  Score=37.13  Aligned_cols=18  Identities=22%  Similarity=0.595  Sum_probs=15.2

Q ss_pred             cccCcccccccccCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...|+.||.|..+||.++
T Consensus         5 ~~~C~~Cg~C~~~CP~~a   22 (24)
T PF00037_consen    5 PDKCIGCGRCVEACPFDA   22 (24)
T ss_dssp             TTTSSS-THHHHHSTTSS
T ss_pred             hHHCCCcchhhhhccccc
Confidence            458999999999999986

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....

>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family

Probab=95.86  E-value=0.0022  Score=58.44  Aligned_cols=50  Identities=22%  Similarity=0.529  Sum_probs=34.0

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      .+..+|+.|+.|..+||.....                ..++.       .     .. ....|..||.|..+||.+.-
T Consensus       145 id~~~C~~C~~C~~~CP~~ai~----------------~~~~~-------~-----~i-~~~~C~~Cg~C~~~CP~~AI  194 (234)
T TIGR02700       145 IDRKRCKGCGICVDACPRSAID----------------MVDGK-------A-----FI-RLLKCVGCGKCKEACPYNAI  194 (234)
T ss_pred             EChhHCcCcchHHHhCCcccEE----------------ecCCc-------e-----EE-chhhCCccchHHhhCCCCce
Confidence            4557899999999999964310                00110       0     11 33579999999999998764

This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.

>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=95.76  E-value=0.0049  Score=33.18  Aligned_cols=16  Identities=31%  Similarity=0.827  Sum_probs=13.7

Q ss_pred             ccCcccccccccCCCC
Q 045926          261 YRCRAIKNCTATCPKG  276 (302)
Q Consensus       261 ~~C~~Cg~C~~vCP~g  276 (302)
                      ..|+.|+.|+.+||.+
T Consensus         2 ~~C~~C~~C~~~Cp~~   17 (17)
T PF12800_consen    2 ERCIGCGSCVDVCPTQ   17 (17)
T ss_dssp             CCCTTSSSSTTTSTT-
T ss_pred             CcCCCCchHHhhccCC
Confidence            3799999999999974

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.

>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]

Probab=95.70  E-value=0.0028  Score=49.13  Aligned_cols=51  Identities=20%  Similarity=0.348  Sum_probs=33.9

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      ..+..+||.|+.|.--||......               ..++..        .   .. .-..|-.||-|+.+||+.
T Consensus        31 v~d~~kCi~C~~C~~yCPe~~i~~---------------~~~~~~--------~---~i-dYdyCKGCGICa~vCP~k   81 (91)
T COG1144          31 VVDEDKCINCKLCWLYCPEPAILE---------------EEGGYK--------V---RI-DYDYCKGCGICANVCPVK   81 (91)
T ss_pred             EEcccccccCceeEEECCchheee---------------ccCCcc--------c---ee-EcccccCceechhhCChh
Confidence            456789999999999999643210               001100        0   01 235899999999999983

>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein

Probab=95.69  E-value=0.0018  Score=58.21  Aligned_cols=57  Identities=28%  Similarity=0.622  Sum_probs=33.3

Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc--cccccCCCCCC
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK--NCTATCPKGLD  278 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg--~C~~vCP~gI~  278 (302)
                      +.+|+.||.|+.+||+.......            + .+..... ...   +.  . ....|.+|+  .|+.+||+++-
T Consensus        52 ~~~Ci~Cg~Cv~aCP~~ai~~~~------------~-~~~~~~g-~p~---~~--~-~~~~C~~C~d~~Cv~~CP~~Ai  110 (213)
T TIGR00397        52 LAACVRCGLCVEACPYDILSLAS------------W-SDPAPLG-TPF---FT--P-REVPCRMCKDIPCARACPTGAL  110 (213)
T ss_pred             cccccchhHHHHhCCcccccccc------------c-ccccccC-Ccc---cc--c-cCCcCCCCCCchHHhHcCHhhh
Confidence            47899999999999975421100            0 0000000 000   10  1 224699999  69999999873

MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.

>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG

Probab=95.62  E-value=0.0031  Score=62.54  Aligned_cols=40  Identities=30%  Similarity=0.615  Sum_probs=29.6

Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK  275 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~  275 (302)
                      ...|+.|+.|+.+||....                 ..++                 ....|+.||.|.++||.
T Consensus       230 ~~~Ci~C~~Cv~vCP~gi~-----------------~~~~-----------------~~~~Ci~Cg~CidaCp~  269 (434)
T TIGR02745       230 LGDCIDCNLCVQVCPTGID-----------------IRDG-----------------LQLECINCGLCIDACDD  269 (434)
T ss_pred             CCCCCChhhhHHhCCCCCE-----------------eCCC-----------------CchhChhhhHHHHhCCC
Confidence            4689999999999995310                 0010                 12469999999999996

Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.

>COG2768 Uncharacterized Fe-S center protein [General function prediction only]

Probab=95.56  E-value=0.0032  Score=59.06  Aligned_cols=49  Identities=20%  Similarity=0.419  Sum_probs=35.2

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      -.-.+|+.||.|+..||+....            .+    +.           .  .. +...|..|++|.++||.|+-
T Consensus       190 v~e~kc~~c~~cv~~cp~~Ai~------------~~----~~-----------~--~I-~~~~ci~c~~c~~ac~~gav  238 (354)
T COG2768         190 VVEEKCYDCGLCVKICPVGAIT------------LT----KV-----------V--KI-DYEKCIGCGQCMEACPYGAV  238 (354)
T ss_pred             eeeecccccchhhhhCCCccee------------cc----cc-----------e--ee-chhhccchhhhhhhccCccc
Confidence            3456899999999999986521            00    00           0  11 45589999999999999873

>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit

Probab=95.53  E-value=0.0032  Score=59.70  Aligned_cols=49  Identities=20%  Similarity=0.447  Sum_probs=32.9

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCccc---------ccc
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAI---------KNC  269 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~C---------g~C  269 (302)
                      ..+..+|+.|+.|+.+||.....                 .+..             .. ....|++|         ..|
T Consensus       158 ~ID~ekCiGCg~Cv~ACPygAi~-----------------~n~~-------------~~-~~eKC~~C~~Rie~G~~PaC  206 (321)
T TIGR03478       158 LVDQERCKGYRYCVEACPYKKVY-----------------FNPQ-------------SQ-KSEKCIGCYPRIEKGIAPAC  206 (321)
T ss_pred             EECHHHCcchHHHHHhCCCCCcE-----------------ecCC-------------CC-chhhCCCchhhhccCCCCHH
Confidence            34566788888888888853210                 0000             01 34589999         899


Q ss_pred             cccCCCCCC
Q 045926          270 TATCPKGLD  278 (302)
Q Consensus       270 ~~vCP~gI~  278 (302)
                      +.+||.++-
T Consensus       207 v~aCP~~A~  215 (321)
T TIGR03478       207 VKQCPGRIR  215 (321)
T ss_pred             HhhcCcccE
Confidence            999998875

This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.

>TIGR00276 iron-sulfur cluster binding protein, putative

Probab=95.51  E-value=0.01  Score=55.73  Aligned_cols=67  Identities=19%  Similarity=0.377  Sum_probs=36.3

Q ss_pred             ccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCc-ccccccccCCCCCC
Q 045926          203 YECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCR-AIKNCTATCPKGLD  278 (302)
Q Consensus       203 ~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~-~Cg~C~~vCP~gI~  278 (302)
                      ..|..|+.|..+||+.....+..+.+..=+ .|..+... .....+ +..      ....|+ .|+.|..+||.+..
T Consensus       159 ~~C~~C~~C~~aCPt~AI~~~~~~d~~~C~-sy~ti~~~-~~~~~~-~~~------~~~~~~~gCd~Cq~vCP~n~~  226 (282)
T TIGR00276       159 EYCGRCTKCIDACPTQALVEPEFVDAPRCI-SYLTIEKD-AALPKE-FAS------NCGGRSYGCDICQEVCPWNKK  226 (282)
T ss_pred             CCCccHHHHHHhcCcccccCCCccCHHHHH-HHhcccCC-CcCCHH-HHH------HhcCcccCCCCccccCCCCCC
Confidence            579999999999998764322223332111 11111111 100011 110      233565 69999999998864

This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.

>TIGR01660 narH nitrate reductase, beta subunit

Probab=95.49  E-value=0.0024  Score=63.17  Aligned_cols=24  Identities=25%  Similarity=0.614  Sum_probs=18.0

Q ss_pred             EEEEecCCCCCCCCCceeEEEEecC
Q 045926           62 FRIYRWNPDRPDSKPFLQSYHVDLS   86 (302)
Q Consensus        62 ~~I~r~~p~~~~~~~~~~~y~v~~~   86 (302)
                      .+||- ||+-|.-..||+.++++.+
T Consensus        86 ~~iF~-np~~p~~~dyyep~ty~y~  109 (492)
T TIGR01660        86 ANIFA-NPDLPSIDDYYEPFDFDYQ  109 (492)
T ss_pred             hHhhc-CCCCCCcccccCCcccchh
Confidence            46664 8888888888888888763

The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit

Probab=95.37  E-value=0.0063  Score=62.68  Aligned_cols=47  Identities=23%  Similarity=0.410  Sum_probs=32.8

Q ss_pred             ccccccCcccCcccC--CCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926          199 LDGLYECILCACCTT--SCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~--aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      ..+..+|+.||.|..  +||....                  .+++       .     .. .. .|+.||.|+.+||.+
T Consensus       546 ~id~~~C~~C~~C~~~~~CP~~~~------------------~~~~-------~-----~i-~~-~C~~Cg~C~~~CP~~  593 (595)
T TIGR03336       546 KVDQDKCIGCKKCIKELGCPAIEP------------------EDKE-------A-----VI-DP-LCTGCGVCAQICPFD  593 (595)
T ss_pred             EEcCCcCCCccccccccCCCCccc------------------cCCc-------c-----ee-CC-CCcCHHHHHhhCccc
Confidence            445679999999999  9995320                  0110       0     11 22 699999999999987


Q ss_pred             C
Q 045926          277 L  277 (302)
Q Consensus       277 I  277 (302)
                      +
T Consensus       594 A  594 (595)
T TIGR03336       594 A  594 (595)
T ss_pred             c
Confidence            5

Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.

>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein

Probab=95.34  E-value=0.0058  Score=59.58  Aligned_cols=47  Identities=26%  Similarity=0.497  Sum_probs=32.4

Q ss_pred             ccccccCcccCccc--CCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926          199 LDGLYECILCACCT--TSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       199 ~~~~~~CI~CG~C~--~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      ..+..+|+.|+.|.  .+||+....                 .+.          .+     ....|..||.|+.+||.+
T Consensus       298 ~id~dkCi~Cg~C~~~~aCPt~AI~-----------------~~~----------~I-----d~~~Ci~CGaCV~aCP~~  345 (391)
T TIGR03287       298 KYNPERCENCDPCLVEEACPVPAIK-----------------KDG----------TL-----NTEDCFGCGYCAEICPGG  345 (391)
T ss_pred             EEchhhCcCCCCCcCCcCCCHhhEe-----------------ccc----------ee-----ChHhCcChHHHHhhCCcc
Confidence            45667899999995  899953210                 000          01     234799999999999975


Q ss_pred             C
Q 045926          277 L  277 (302)
Q Consensus       277 I  277 (302)
                      +
T Consensus       346 A  346 (391)
T TIGR03287       346 A  346 (391)
T ss_pred             c
Confidence            4

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.

>PRK10194 ferredoxin-type protein; Provisional

Probab=95.31  E-value=0.0035  Score=53.86  Aligned_cols=19  Identities=32%  Similarity=0.868  Sum_probs=16.0

Q ss_pred             ccccCcccCcccCCCCCcc
Q 045926          201 GLYECILCACCTTSCPSYW  219 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~  219 (302)
                      +...|+.|+.|+.+||+..
T Consensus        64 ~~~~C~~C~~C~~~CP~~a   82 (163)
T PRK10194         64 KNNECSFCYACAQACPESL   82 (163)
T ss_pred             cCCCCCCchhhHhhCcchh
Confidence            3467999999999999854

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=95.26  E-value=0.016  Score=63.31  Aligned_cols=31  Identities=35%  Similarity=0.717  Sum_probs=25.5

Q ss_pred             CcccccCCCCCccCccEEEECCEEecccccc
Q 045926          106 SLSYRRSCREGICGSCAMNIGGTNTVACLKP  136 (302)
Q Consensus       106 tL~~~~~C~~g~CG~C~V~VnG~~~laC~t~  136 (302)
                      +|.-+..|..|+||.|.|.+.|...++|..-
T Consensus       210 Sle~~M~cG~G~Cg~C~v~~~~~~~~~C~DG  240 (1006)
T PRK12775        210 SLNAIMVDGTGMCGSCRVTVGGEVKFACVDG  240 (1006)
T ss_pred             CChhheeCccceeCCCEeeeCCceEEEeCCC
Confidence            4555567999999999999999778899754

>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional

Probab=95.24  E-value=0.00075  Score=62.32  Aligned_cols=16  Identities=19%  Similarity=0.530  Sum_probs=15.0

Q ss_pred             ccCcccccccccCCCC
Q 045926          261 YRCRAIKNCTATCPKG  276 (302)
Q Consensus       261 ~~C~~Cg~C~~vCP~g  276 (302)
                      ..|+.||.|+.+||.+
T Consensus       184 d~C~gCG~C~~aCP~~  199 (254)
T PRK09476        184 DACTGCGKCEKACVLE  199 (254)
T ss_pred             HHCcCcChhhHhcCCC
Confidence            5799999999999997

>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing

Probab=95.22  E-value=0.009  Score=56.07  Aligned_cols=63  Identities=24%  Similarity=0.455  Sum_probs=38.7

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc---------cc
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK---------NC  269 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg---------~C  269 (302)
                      ..+.++|+.|+.|+.+||.....                 .+..             .. ....|..|.         +|
T Consensus       120 ~id~dkCigC~~Cv~aCP~~a~~-----------------~~~~-------------~~-~~~KC~~C~dr~~~G~~PaC  168 (283)
T TIGR01582       120 DFDHSKCIGCGYCIVGCPFNIPR-----------------YDKV-------------DN-RPYKCTLCIDRVSVGQEPAC  168 (283)
T ss_pred             EEeHHHCCcchHHHhhCCCCCcE-----------------EcCC-------------CC-ChhhhcccccccccCCCChH
Confidence            34567788888888888853210                 0000             00 245788885         89


Q ss_pred             cccCCCCCC----HHHHHHHHHHHHhh
Q 045926          270 TATCPKGLD----PADAIHKMKTKHML  292 (302)
Q Consensus       270 ~~vCP~gI~----~~~~I~~lR~~l~~  292 (302)
                      +.+||+++-    ..+++...++.+.+
T Consensus       169 v~aCP~gAi~fg~~~~~~~~a~~r~~~  195 (283)
T TIGR01582       169 VKTCPTNAISFGFKEDMKERAEKRVAD  195 (283)
T ss_pred             hCcccHhhEEECCHHHHHHHHHHHHHh
Confidence            999999876    34555555544443

In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.

>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein

Probab=95.13  E-value=0.0045  Score=56.12  Aligned_cols=52  Identities=23%  Similarity=0.387  Sum_probs=34.4

Q ss_pred             cccccCcccCc--ccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          200 DGLYECILCAC--CTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       200 ~~~~~CI~CG~--C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      +....|++|+.  |+.+||+.....+.              .++.          +  .. ....|+.||.|..+||.++
T Consensus        89 ~~~~~C~~C~~~~Cv~~CP~gAi~~~~--------------~~g~----------v--~i-d~~~C~~C~~C~~aCP~~A  141 (225)
T TIGR03149        89 FFRKSCQHCDNAPCVAVCPTGASFKDE--------------ETGI----------V--DV-HKDLCVGCQYCIAACPYRV  141 (225)
T ss_pred             ECchhccCCcCcChHhhCCCCcEEEeC--------------CCCe----------E--Ee-chhhCCcchHHHHhCCCCC
Confidence            34568999996  99999975421000              0010          0  01 2347999999999999998


Q ss_pred             C
Q 045926          278 D  278 (302)
Q Consensus       278 ~  278 (302)
                      .
T Consensus       142 ~  142 (225)
T TIGR03149       142 R  142 (225)
T ss_pred             c
Confidence            4

Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.

>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit

Probab=95.11  E-value=0.0029  Score=59.94  Aligned_cols=55  Identities=20%  Similarity=0.346  Sum_probs=36.5

Q ss_pred             hhccccccCcccC--cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCC
Q 045926          197 KKLDGLYECILCA--CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCP  274 (302)
Q Consensus       197 ~~~~~~~~CI~CG--~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP  274 (302)
                      ..++....|++|+  .|+.+||+......              ..++.          +  .. ....|+.|+.|+.+||
T Consensus       123 ~~~y~p~~C~hC~nP~Cv~aCPtgAI~k~--------------eedGi----------V--~I-D~ekCiGCg~Cv~ACP  175 (321)
T TIGR03478       123 YYFYLPRICNHCTNPACLAACPTGAIYKR--------------EEDGI----------V--LV-DQERCKGYRYCVEACP  175 (321)
T ss_pred             eEEEecccCCCCCCccchhhCCcCcEEEe--------------cCCCe----------E--EE-CHHHCcchHHHHHhCC
Confidence            3446678999999  99999997542100              00110          0  01 2347999999999999


Q ss_pred             CCCC
Q 045926          275 KGLD  278 (302)
Q Consensus       275 ~gI~  278 (302)
                      .++.
T Consensus       176 ygAi  179 (321)
T TIGR03478       176 YKKV  179 (321)
T ss_pred             CCCc
Confidence            9874

This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.

>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]

Probab=95.10  E-value=0.0099  Score=51.94  Aligned_cols=52  Identities=25%  Similarity=0.419  Sum_probs=35.3

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      +.+-+.||.|-.|..+||+-..           +.+-+.           .. .+     ....|+.|+.|+..||++..
T Consensus       111 ~i~e~~ciGCtkCiqaCpvdAi-----------vg~~~~-----------mh-tv-----~~dlCTGC~lCva~CPtdci  162 (198)
T COG2878         111 LIDEANCIGCTKCIQACPVDAI-----------VGATKA-----------MH-TV-----IADLCTGCDLCVAPCPTDCI  162 (198)
T ss_pred             EecchhccccHHHHHhCChhhh-----------hccchh-----------HH-HH-----HHHHhcCCCcccCCCCCCce
Confidence            4456789999999999997542           111111           01 11     12369999999999999875

>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=95.09  E-value=0.0041  Score=36.44  Aligned_cols=19  Identities=32%  Similarity=0.690  Sum_probs=15.2

Q ss_pred             cccccCcccCcccCCCCCc
Q 045926          200 DGLYECILCACCTTSCPSY  218 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~  218 (302)
                      .+.+.|+.||.|+.+||..
T Consensus         3 id~~~C~~Cg~C~~~CP~~   21 (24)
T PF00037_consen    3 IDPDKCIGCGRCVEACPFD   21 (24)
T ss_dssp             EETTTSSS-THHHHHSTTS
T ss_pred             EchHHCCCcchhhhhcccc
Confidence            3567899999999999964

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....

>PRK14993 tetrathionate reductase subunit B; Provisional

Probab=95.08  E-value=0.006  Score=56.00  Aligned_cols=49  Identities=20%  Similarity=0.484  Sum_probs=34.4

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc---------cc
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK---------NC  269 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg---------~C  269 (302)
                      ..+...|+.|+.|+.+||.....                 .++.             .. ....|++|+         .|
T Consensus       126 ~id~~~CigC~~Cv~aCP~~Ai~-----------------~~~~-------------~~-~~~KC~~C~~r~~~G~~PaC  174 (244)
T PRK14993        126 VVDNKRCVGCAYCVQACPYDARF-----------------INHE-------------TQ-TADKCTFCVHRLEAGLLPAC  174 (244)
T ss_pred             EEcHHHCCCHHHHHHhcCCCCCE-----------------EeCC-------------CC-CcccCcCCcchhhCCCCccc
Confidence            34567899999999999964310                 0110             01 346899998         89


Q ss_pred             cccCCCCCC
Q 045926          270 TATCPKGLD  278 (302)
Q Consensus       270 ~~vCP~gI~  278 (302)
                      +.+||+++-
T Consensus       175 v~~CP~~Al  183 (244)
T PRK14993        175 VESCVGGAR  183 (244)
T ss_pred             chhcccCCE
Confidence            999998875

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=95.07  E-value=0.0085  Score=59.77  Aligned_cols=46  Identities=28%  Similarity=0.656  Sum_probs=33.4

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      +...|++||.|.. ||.....                 .+ +.            .. ....|..||.|+.+||.|+-
T Consensus       559 de~~C~gC~~C~~-Cpf~ais-----------------~~-ka------------~v-~~~~C~gCG~C~~aCp~gai  604 (622)
T COG1148         559 DEDKCTGCGICAE-CPFGAIS-----------------VD-KA------------EV-NPLRCKGCGICSAACPSGAI  604 (622)
T ss_pred             chhhhcCCcceee-CCCCcee-----------------cc-cc------------cc-ChhhhCcccchhhhCCcccc
Confidence            4568999999999 9965421                 01 00            11 34589999999999999885

>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B

Probab=95.00  E-value=0.0031  Score=49.94  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=15.9

Q ss_pred             hhccccccCcccCcccCCCCCcc
Q 045926          197 KKLDGLYECILCACCTTSCPSYW  219 (302)
Q Consensus       197 ~~~~~~~~CI~CG~C~~aCP~~~  219 (302)
                      ....+..+||.||.|..+||...
T Consensus        34 ~V~id~~~CigC~~C~~aCP~~a   56 (98)
T PF13247_consen   34 IVVIDEDKCIGCGYCVEACPYGA   56 (98)
T ss_dssp             -EEE-TTTCCTHHHHHHH-TTS-
T ss_pred             eEEechhhccCchhhhhhhccCc
Confidence            34556789999999999999643

...

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=94.92  E-value=0.058  Score=58.85  Aligned_cols=77  Identities=14%  Similarity=0.004  Sum_probs=53.0

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCccc---cc-C--CCCCccCccEEEECCE---
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSY---RR-S--CREGICGSCAMNIGGT---  128 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~---~~-~--C~~g~CG~C~V~VnG~---  128 (302)
                      +.|+|.++.              -.++..+ |.||.-||...+.. .-.-+|   ++ +  |..|.|-.|.|.|||.   
T Consensus        11 ~~~~~~~dg--------------~~~~~~~-g~t~a~al~a~g~~-~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~~   74 (985)
T TIGR01372        11 RPLRFTFDG--------------KSYSGFA-GDTLASALLANGVH-LVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQR   74 (985)
T ss_pred             CeEEEEECC--------------EEeecCC-CCHHHHHHHhCCCe-eecccCCCCCCCcccccCccCCCeEEEECCCcCC
Confidence            457776666              3455667 99999999987733 112233   11 1  8878899999999973   


Q ss_pred             --EeccccccccCCCCCceEEccCCCch
Q 045926          129 --NTVACLKPIDGDTSKPTIITPLPHMF  154 (302)
Q Consensus       129 --~~laC~t~v~~~~~~~~~Iepl~~~~  154 (302)
                        +++||.|++.+    .++|+....+|
T Consensus        75 ~~~~~ac~~~~~~----gm~~~~~~~~~   98 (985)
T TIGR01372        75 EPNTRATTQELYD----GLVATSQNRWP   98 (985)
T ss_pred             CCCccceeEEccc----CCEEecccCCC
Confidence              46899999987    45666555443

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK13795 hypothetical protein; Provisional

Probab=94.92  E-value=0.004  Score=64.65  Aligned_cols=53  Identities=23%  Similarity=0.484  Sum_probs=34.2

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      +.....|+.||.|+.+||......                .+...        .+  .. ....|+.||.|+.+||.+.-
T Consensus       577 v~~~~~C~~Cg~C~~~CP~~ai~~----------------~~~~~--------~~--~i-d~~~C~~Cg~C~~aCP~~a~  629 (636)
T PRK13795        577 LRRAAECVGCGVCVGACPTGAIRI----------------EEGKR--------KI--SV-DEEKCIHCGKCTEVCPVVKY  629 (636)
T ss_pred             EEccccCCCHhHHHHhCCcccEEe----------------ecCCc--------eE--Ee-chhhcCChhHHHhhcCCCee
Confidence            345679999999999999643100                00000        00  01 23479999999999998653

>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit

Probab=94.87  E-value=0.0094  Score=50.97  Aligned_cols=49  Identities=22%  Similarity=0.455  Sum_probs=32.3

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc---------ccc
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK---------NCT  270 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg---------~C~  270 (302)
                      .+...|+.||.|+.+||.....                 .+..             .. ....|+.|+         +|+
T Consensus        92 i~~~~C~~C~~C~~aCP~~ai~-----------------~~~~-------------~~-~~~kC~~C~~r~~~g~~p~Cv  140 (161)
T TIGR02951        92 VDQDKCIGCRYCVWACPYGAPQ-----------------YDPQ-------------QG-VMGKCDGCYDRVEKGLRPACV  140 (161)
T ss_pred             ECHHhCCCchHHHhhCCCCCcE-----------------EcCC-------------CC-ccccCCCCHHHHHCCCCCcch
Confidence            4456788888888888853210                 0000             01 345899998         999


Q ss_pred             ccCCCCCCH
Q 045926          271 ATCPKGLDP  279 (302)
Q Consensus       271 ~vCP~gI~~  279 (302)
                      .+||+++-.
T Consensus       141 ~~Cp~~Ai~  149 (161)
T TIGR02951       141 DACPMRALD  149 (161)
T ss_pred             hhccccceE
Confidence            999998753

This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.

>PRK10882 hydrogenase 2 protein HybA; Provisional

Probab=94.83  E-value=0.0077  Score=57.66  Aligned_cols=51  Identities=18%  Similarity=0.459  Sum_probs=34.1

Q ss_pred             ccccCcccC--cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          201 GLYECILCA--CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       201 ~~~~CI~CG--~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ....|++|+  .|+.+||+.......              ..+       .+     .. ....|+.|+.|+.+||.++.
T Consensus       108 ~~~~C~hC~~p~Cv~aCP~gAi~k~~--------------~~g-------~V-----~i-d~dkCigCg~Cv~aCP~gai  160 (328)
T PRK10882        108 IKKQCMHCVDPNCVSVCPVSALTKDP--------------KTG-------IV-----HY-DKDVCTGCRYCMVACPFNVP  160 (328)
T ss_pred             ccccCCCcCchhhHhhCCCCCEEecc--------------cCC-------cc-----cC-CHHHcCcccHHHHhCCccce
Confidence            446899998  999999975421100              000       00     01 23579999999999999885

>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional

Probab=94.82  E-value=0.0028  Score=55.34  Aligned_cols=63  Identities=19%  Similarity=0.356  Sum_probs=35.7

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc------cccccC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK------NCTATC  273 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg------~C~~vC  273 (302)
                      .+..+|+.||.|+.+||.....   +.+...+      ...+...      ....... ....|..|+      .|+.+|
T Consensus        84 i~~~~C~~C~~C~~~CP~~ai~---~~~~~~~------~~~~~~~------~~~~~~~-~~~kC~~C~~~~~~paCv~~C  147 (181)
T PRK10330         84 VMQERCIGCKTCVVACPYGAME---VVVRPVI------RNSGAGL------NVRAEKA-EANKCDLCNHREDGPACMAAC  147 (181)
T ss_pred             eChhhCCCcchhhhhCCccCeE---eeccccc------ccccccc------ccccCCc-eeeeCcCCCCCCCCccchhhC
Confidence            4567899999999999965421   0000000      0000000      0000011 245899999      999999


Q ss_pred             CCCCC
Q 045926          274 PKGLD  278 (302)
Q Consensus       274 P~gI~  278 (302)
                      |+++-
T Consensus       148 P~~Al  152 (181)
T PRK10330        148 PTHAL  152 (181)
T ss_pred             chhhE
Confidence            99986

>PRK13984 putative oxidoreductase; Provisional

Probab=94.79  E-value=0.0067  Score=62.32  Aligned_cols=61  Identities=23%  Similarity=0.388  Sum_probs=34.8

Q ss_pred             ccccccCcccCcccCCCCCcccCC-CCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          199 LDGLYECILCACCTTSCPSYWWNP-EEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~-~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      +.+..+||.||.|+.+||...... +.+-.+        + ..+...   ...     .. ....|..|+.|..+||.+.
T Consensus        41 ~~d~~~Ci~C~~C~~~Cp~~ai~~~~~~~~~--------~-~~g~~~---~~~-----~i-~~~~c~~c~~c~~~Cp~~A  102 (604)
T PRK13984         41 INDWEKCIGCGTCSKICPTDAITMVEVPDLP--------Q-EYGKKP---QRP-----VI-DYGRCSFCALCVDICTTGS  102 (604)
T ss_pred             ccChhhCcCccchhhhCCccceEeecccccc--------c-cccccc---ccc-----cc-CcccCcCcchHHhhCCcCc
Confidence            346789999999999999543110 000000        0 000000   000     11 2357999999999999864

>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=94.76  E-value=0.006  Score=31.83  Aligned_cols=14  Identities=36%  Similarity=1.094  Sum_probs=12.6

Q ss_pred             CcccCcccCCCCCc
Q 045926          205 CILCACCTTSCPSY  218 (302)
Q Consensus       205 CI~CG~C~~aCP~~  218 (302)
                      |+.|+.|+.+||+.
T Consensus         1 C~~C~~C~~~Cp~~   14 (15)
T PF12798_consen    1 CTGCGACVEVCPTG   14 (15)
T ss_pred             CCCchHHHHHhcCC
Confidence            89999999999963

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding

>PRK07118 ferredoxin; Validated

Probab=94.73  E-value=0.0066  Score=56.88  Aligned_cols=47  Identities=21%  Similarity=0.520  Sum_probs=32.5

Q ss_pred             ccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          203 YECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       203 ~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      +.||.||.|+.+||+....                +.++..            .. ....|+.||.|+.+||.++-
T Consensus       139 ~~CigCg~C~~aCp~~AI~----------------~~~g~~------------~i-d~~~C~~Cg~Cv~aCP~~ai  185 (280)
T PRK07118        139 YGCLGLGSCVAACPFDAIH----------------IENGLP------------VV-DEDKCTGCGACVKACPRNVI  185 (280)
T ss_pred             CCCcChhHHHHhCCccCeE----------------ccCCeE------------EE-ChhhCcChhHHHHhcCccce
Confidence            4799999999999964321                011110            01 23589999999999998764

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.64  E-value=0.0038  Score=64.87  Aligned_cols=22  Identities=18%  Similarity=0.561  Sum_probs=18.4

Q ss_pred             hccccccCcccCcccCCCCCcc
Q 045926          198 KLDGLYECILCACCTTSCPSYW  219 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~  219 (302)
                      .+.+.++||.|+.|..+|+...
T Consensus         5 i~~d~~~C~gC~~C~~aC~~~~   26 (654)
T PRK12769          5 IMANSQQCLGCHACEIACVMAH   26 (654)
T ss_pred             EEEChHhCcChhHHHHHhhhhh
Confidence            4457889999999999999743

>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein

Probab=94.61  E-value=0.006  Score=54.88  Aligned_cols=18  Identities=17%  Similarity=0.453  Sum_probs=15.7

Q ss_pred             cccCcccccccccCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...|+.||.|..+||++-
T Consensus       174 ~~~C~gCG~C~~~CP~~~  191 (213)
T TIGR00397       174 SAKCTGCGTCEKHCVLSE  191 (213)
T ss_pred             cccCCCcchhhHhCCCCC
Confidence            358999999999999874

MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=94.58  E-value=0.019  Score=62.37  Aligned_cols=58  Identities=21%  Similarity=0.391  Sum_probs=35.6

Q ss_pred             cccccCccc----CcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC
Q 045926          200 DGLYECILC----ACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK  275 (302)
Q Consensus       200 ~~~~~CI~C----G~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~  275 (302)
                      .+..+|+.|    |.|+.+||......         +...  ......    +   .+.    ....|+.||+|..+||.
T Consensus       883 ~~~~rC~~C~~~C~~C~~vCP~~A~~~---------i~~~--g~~~~~----~---~~~----~~~~C~~CG~C~~~CP~  940 (1019)
T PRK09853        883 QEAARCLECNYVCEKCVDVCPNRANVS---------IAVP--GFQNRF----Q---IVH----LDAMCNECGNCAQFCPW  940 (1019)
T ss_pred             ccccccCCcccccchhhhhCCcccccc---------cccC--CcccCC----c---eEE----cCccCccccchhhhCCC
Confidence            356799999    99999999754110         0000  000000    0   010    13589999999999999


Q ss_pred             CCCH
Q 045926          276 GLDP  279 (302)
Q Consensus       276 gI~~  279 (302)
                      +..|
T Consensus       941 ~~~p  944 (1019)
T PRK09853        941 NGKP  944 (1019)
T ss_pred             CCCc
Confidence            8764

>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional

Probab=94.51  E-value=0.0065  Score=56.14  Aligned_cols=18  Identities=39%  Similarity=0.914  Sum_probs=15.4

Q ss_pred             cccCcccCcccCCCCCcc
Q 045926          202 LYECILCACCTTSCPSYW  219 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~  219 (302)
                      ...|+.||.|+.+||...
T Consensus        58 ~~~Ci~Cg~Cv~aCP~~a   75 (254)
T PRK09476         58 LSACIRCGLCVQACPYDT   75 (254)
T ss_pred             hhhCcCchHHHHhCCccc
Confidence            378999999999999643

>TIGR01660 narH nitrate reductase, beta subunit

Probab=94.49  E-value=0.011  Score=58.67  Aligned_cols=20  Identities=25%  Similarity=0.469  Sum_probs=16.5

Q ss_pred             ccccCcccc---------cccccCCCCCC
Q 045926          259 KLYRCRAIK---------NCTATCPKGLD  278 (302)
Q Consensus       259 ~~~~C~~Cg---------~C~~vCP~gI~  278 (302)
                      ....|.+|.         .|+++||.++.
T Consensus       239 ~~~KCd~C~~Rie~G~pPaCVeaCP~~Ar  267 (492)
T TIGR01660       239 KSEKCIFCYPRIEAGQPTVCSETCVGRIR  267 (492)
T ss_pred             ccccCCCChhHHhCCCCCcchhhcChhhh
Confidence            356899995         79999999984

The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=94.45  E-value=0.061  Score=50.47  Aligned_cols=65  Identities=23%  Similarity=0.450  Sum_probs=47.1

Q ss_pred             cceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccC-CC-CCccCccEEEEC--C----
Q 045926           56 KKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRS-CR-EGICGSCAMNIG--G----  127 (302)
Q Consensus        56 ~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~-C~-~g~CG~C~V~Vn--G----  127 (302)
                      +...+||+|+. ||+          ....++. |.+||.+|...|+       |-.| |. .|.||-|-|+|-  |    
T Consensus        33 ~~gd~ti~IN~-d~e----------~~~t~~a-G~kLL~~L~~~gi-------fi~SaCGGggsC~QCkv~v~~ggge~L   93 (410)
T COG2871          33 KVGDITIKING-DPE----------KTKTVPA-GGKLLGALASSGI-------FISSACGGGGSCGQCKVRVKKGGGEIL   93 (410)
T ss_pred             ecCceEEEeCC-Chh----------hceecCC-chhHHHHHHhCCc-------ccccCCCCCccccccEEEEecCCCccC
Confidence            34568999998 443          3355556 9999999998774       3333 75 589999999883  2    


Q ss_pred             --------------EEeccccccccC
Q 045926          128 --------------TNTVACLKPIDG  139 (302)
Q Consensus       128 --------------~~~laC~t~v~~  139 (302)
                                    --+|||++.|..
T Consensus        94 pTe~sh~skrea~eG~RLsCQ~~Vk~  119 (410)
T COG2871          94 PTELSHISKREAKEGWRLSCQVNVKH  119 (410)
T ss_pred             cchhhhhhhhhhhccceEEEEecccc
Confidence                          135899999974

>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing

Probab=94.39  E-value=0.0094  Score=55.95  Aligned_cols=51  Identities=20%  Similarity=0.406  Sum_probs=33.7

Q ss_pred             cccccCcccCc--ccCCCCC-cccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926          200 DGLYECILCAC--CTTSCPS-YWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       200 ~~~~~CI~CG~--C~~aCP~-~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      +....|++|+.  |+.+||+ .....               ..++.          +  .. ....|+.|+.|+.+||.+
T Consensus        88 ~~~~~C~hC~~p~Cv~aCP~~gA~~~---------------~~~G~----------V--~i-d~dkCigC~~Cv~aCP~~  139 (283)
T TIGR01582        88 IRKDGCMHCREPGCLKACPAPGAIIQ---------------YQNGI----------V--DF-DHSKCIGCGYCIVGCPFN  139 (283)
T ss_pred             ECCccCCCCCCccccCCCCcCCeEEE---------------cCCCc----------E--EE-eHHHCCcchHHHhhCCCC
Confidence            34567999998  9999996 22100               00110          0  01 234799999999999999


Q ss_pred             CC
Q 045926          277 LD  278 (302)
Q Consensus       277 I~  278 (302)
                      +.
T Consensus       140 a~  141 (283)
T TIGR01582       140 IP  141 (283)
T ss_pred             Cc
Confidence            85

In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.

>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma

Probab=94.33  E-value=0.0065  Score=55.22  Aligned_cols=54  Identities=24%  Similarity=0.521  Sum_probs=36.1

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ..+..+|+.|+.|+.+||.....               . .+++       .     .. ....|..|+.|..+||.+..
T Consensus       170 ~id~~~C~~C~~C~~aCP~~ai~---------------~-~~~~-------~-----~i-~~~~C~~C~~C~~~CP~~~~  220 (228)
T TIGR03294       170 VVNQGLCMGCGTCAAACPTRAIE---------------M-EDGR-------P-----NV-NRDRCIKCGACYVQCPRAFW  220 (228)
T ss_pred             EEChhhCcChhHHHHhCCHhhEE---------------E-eCCc-------E-----EE-ChhhccCHHHHHHHcCCCCc
Confidence            34567999999999999953210               0 0110       0     01 23479999999999999876


Q ss_pred             HHH
Q 045926          279 PAD  281 (302)
Q Consensus       279 ~~~  281 (302)
                      +.+
T Consensus       221 ~~~  223 (228)
T TIGR03294       221 PEY  223 (228)
T ss_pred             chh
Confidence            543

This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.

>PRK07118 ferredoxin; Validated

Probab=94.28  E-value=0.01  Score=55.55  Aligned_cols=48  Identities=21%  Similarity=0.478  Sum_probs=33.5

Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ...||.|+.|+.+||.....                +.+...            .. ....|+.||.|..+||+++.
T Consensus       212 ~~~Ci~Cg~Cv~~CP~~AI~----------------~~~~~~------------vI-d~~~C~~Cg~C~~~CP~~AI  259 (280)
T PRK07118        212 EVGCIGCGKCVKACPAGAIT----------------MENNLA------------VI-DQEKCTSCGKCVEKCPTKAI  259 (280)
T ss_pred             ccccccchHHHhhCCcCcEE----------------EeCCcE------------EE-cCCcCCCHHHHHHhCCcccc
Confidence            46799999999999964321                011100            11 34689999999999999875

>PRK09898 hypothetical protein; Provisional

Probab=94.27  E-value=0.012  Score=52.63  Aligned_cols=52  Identities=21%  Similarity=0.422  Sum_probs=34.2

Q ss_pred             cccccCcccC--cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          200 DGLYECILCA--CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       200 ~~~~~CI~CG--~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .....|++|+  .|+.+||+.....                 +....    .   +  .. ....|+.|+.|+.+||.++
T Consensus       118 ~~~~~C~~C~~~~C~~~CP~gAi~~-----------------~~~~g----~---v--~v-d~~~CigC~~C~~aCP~~a  170 (208)
T PRK09898        118 YTADTCRQCKEPQCMNVCPIGAITW-----------------QQKEG----C---I--TV-DHKRCIGCSACTTACPWMM  170 (208)
T ss_pred             EeCccCCCccCcchhhhCCcceEEe-----------------eccCC----e---E--Ee-ccccCCCcCcccccCCCCC
Confidence            3456899998  9999999653210                 00000    0   0  01 2357999999999999987


Q ss_pred             C
Q 045926          278 D  278 (302)
Q Consensus       278 ~  278 (302)
                      .
T Consensus       171 i  171 (208)
T PRK09898        171 A  171 (208)
T ss_pred             C
Confidence            4

>TIGR02486 RDH reductive dehalogenase

Probab=94.24  E-value=0.022  Score=54.26  Aligned_cols=28  Identities=25%  Similarity=0.457  Sum_probs=21.5

Q ss_pred             ccccccccCCCCCCHHHHHHHHHHHHhh
Q 045926          265 AIKNCTATCPKGLDPADAIHKMKTKHML  292 (302)
Q Consensus       265 ~Cg~C~~vCP~gI~~~~~I~~lR~~l~~  292 (302)
                      .||.|..+||.+......|..+=+..+.
T Consensus       268 ~C~~C~~~CPf~~~~~s~iH~vvk~tv~  295 (314)
T TIGR02486       268 GCGVCQAVCPFNKKPNSWIHDVVRSTVS  295 (314)
T ss_pred             CCCCCeeECCCCCCCcchHHHHHHHHhc
Confidence            5999999999997766667766555544

This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=94.24  E-value=0.013  Score=63.61  Aligned_cols=17  Identities=29%  Similarity=0.679  Sum_probs=15.5

Q ss_pred             cCcccccccccCCCCCC
Q 045926          262 RCRAIKNCTATCPKGLD  278 (302)
Q Consensus       262 ~C~~Cg~C~~vCP~gI~  278 (302)
                      .|..||.|+.+||.+..
T Consensus       922 ~C~~CG~C~~vCP~~a~  938 (1012)
T TIGR03315       922 MCNECGNCATFCPYDGA  938 (1012)
T ss_pred             cccccchHHHhCCCCcc
Confidence            49999999999999875

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]

Probab=94.12  E-value=0.01  Score=60.65  Aligned_cols=52  Identities=23%  Similarity=0.480  Sum_probs=35.6

Q ss_pred             hccccccCcccCccc--CCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC
Q 045926          198 KLDGLYECILCACCT--TSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK  275 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~--~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~  275 (302)
                      ..-+.++|..|+.|.  ..||+..+.+                   .+.  +.+   +     ....|..||.|+++||.
T Consensus       572 ~~Vd~~~CtGC~~C~~~~~Cpsi~~~~-------------------~~~--k~~---i-----d~~~C~GCg~C~~iCP~  622 (640)
T COG4231         572 YFVDEEKCTGCGDCIVLSGCPSIEPDP-------------------TFK--KAR---I-----DPSSCNGCGSCVEVCPS  622 (640)
T ss_pred             ceechhhcCCcHHHHhhcCCceEeecC-------------------CCC--cee---e-----cccccccchhhhhcCch
Confidence            445678999999998  7899865311                   000  011   1     23469999999999998


Q ss_pred             CCC
Q 045926          276 GLD  278 (302)
Q Consensus       276 gI~  278 (302)
                      .+-
T Consensus       623 ~a~  625 (640)
T COG4231         623 FAI  625 (640)
T ss_pred             hhe
Confidence            763

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.08  E-value=0.036  Score=57.55  Aligned_cols=29  Identities=28%  Similarity=0.409  Sum_probs=25.8

Q ss_pred             cccCcccc---cccccCCCCCCHHHHHHHHHH
Q 045926          260 LYRCRAIK---NCTATCPKGLDPADAIHKMKT  288 (302)
Q Consensus       260 ~~~C~~Cg---~C~~vCP~gI~~~~~I~~lR~  288 (302)
                      ..+|..||   .|...||.++++.+.|..+++
T Consensus       207 a~rC~~C~~~~~C~~~CP~~~~i~~~~~~~~~  238 (639)
T PRK12809        207 SDRCVYCAEKANCNWHCPLHNAIPDYIRLVQE  238 (639)
T ss_pred             HHHHhCCCCCCcccccCCCCCcHHHHHHHHHC
Confidence            45999999   799999999999999988774

>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional

Probab=94.01  E-value=0.0036  Score=54.59  Aligned_cols=21  Identities=24%  Similarity=0.626  Sum_probs=17.8

Q ss_pred             hccccccCcccCcccCCCCCc
Q 045926          198 KLDGLYECILCACCTTSCPSY  218 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~  218 (302)
                      .+.+..+|+.|+.|+.+||..
T Consensus         5 ~~~d~~~C~gC~~C~~aC~~~   25 (181)
T PRK10330          5 IIADASKCIGCRTCEVACVVS   25 (181)
T ss_pred             EEeCcccCcCccHHHHHHHHH
Confidence            445778999999999999964

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=93.90  E-value=0.017  Score=58.95  Aligned_cols=18  Identities=28%  Similarity=0.776  Sum_probs=16.0

Q ss_pred             cccCcccccccccCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...|+.||.|..+||.++
T Consensus       540 ~~~C~~Cg~C~~~CP~~A  557 (564)
T PRK12771        540 YDKCTGCHICADVCPCGA  557 (564)
T ss_pred             cccCcChhHHHhhcCcCc
Confidence            458999999999999876

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=93.79  E-value=0.018  Score=57.51  Aligned_cols=64  Identities=20%  Similarity=0.364  Sum_probs=35.0

Q ss_pred             ccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          203 YECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       203 ~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ++|+.||+|+.+||.-..  ++|---....++   +..+-.    +-+. ..... ..+.|+.||.|..+||.++
T Consensus       224 d~CtgCg~C~~vCPve~~--nefn~Gl~~~kA---iy~p~~----qaVp-~~~~I-d~~~c~~c~~C~~ac~~~a  287 (622)
T COG1148         224 DKCTGCGACSEVCPVEVP--NEFNEGLGKRKA---IYIPFP----QAVP-LNYNI-DPKHCIECGLCEKACPNEA  287 (622)
T ss_pred             ccccccccccccCCcccC--ccccccccccee---eeccch----hhcc-ccccc-ChhhhccchhhhhcCCccc
Confidence            799999999999998542  222100000011   011100    0000 11112 4578999999999999544

>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=93.71  E-value=0.022  Score=32.78  Aligned_cols=17  Identities=35%  Similarity=0.845  Sum_probs=14.8

Q ss_pred             ccccCcccccccccCCC
Q 045926          259 KLYRCRAIKNCTATCPK  275 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~  275 (302)
                      ....|+.||.|+.+||.
T Consensus         6 D~~rCiGC~~C~~AC~~   22 (22)
T PF12797_consen    6 DLERCIGCGACEVACPV   22 (22)
T ss_pred             ccccccCchhHHHhhCc
Confidence            35689999999999984

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=93.53  E-value=0.47  Score=34.89  Aligned_cols=56  Identities=14%  Similarity=0.236  Sum_probs=38.4

Q ss_pred             ceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccc
Q 045926           57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKP  136 (302)
Q Consensus        57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~  136 (302)
                      +.|+++++|.-          +.+.++++++ ++|+.|.|..++..  +             ..++|.+||..+.. .|.
T Consensus         2 ~~mm~v~vng~----------~~~~~~~~~~-~~tv~~ll~~l~~~--~-------------~~v~v~vNg~iv~~-~~~   54 (70)
T PRK08364          2 MLMIRVKVIGR----------GIEKEIEWRK-GMKVADILRAVGFN--T-------------ESAIAKVNGKVALE-DDP   54 (70)
T ss_pred             ceEEEEEEecc----------ccceEEEcCC-CCcHHHHHHHcCCC--C-------------ccEEEEECCEECCC-CcC
Confidence            35788888871          1335666666 89999999988631  1             12799999998754 444


Q ss_pred             ccC
Q 045926          137 IDG  139 (302)
Q Consensus       137 v~~  139 (302)
                      +.+
T Consensus        55 l~~   57 (70)
T PRK08364         55 VKD   57 (70)
T ss_pred             cCC
Confidence            544

>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]

Probab=93.41  E-value=0.016  Score=50.06  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=19.0

Q ss_pred             hhccccccCcccCcccCCCCCccc
Q 045926          197 KKLDGLYECILCACCTTSCPSYWW  220 (302)
Q Consensus       197 ~~~~~~~~CI~CG~C~~aCP~~~~  220 (302)
                      ....+..+||.||+|+.+||....
T Consensus        76 ~v~V~~ekCiGC~~C~~aCPfGai   99 (165)
T COG1142          76 AVQVDEEKCIGCKLCVVACPFGAI   99 (165)
T ss_pred             ceEEchhhccCcchhhhcCCcceE
Confidence            344566799999999999997653

>cd07030 RNAP_D D subunit of Archaeal RNA polymerase

Probab=93.11  E-value=0.015  Score=53.60  Aligned_cols=46  Identities=26%  Similarity=0.603  Sum_probs=30.7

Q ss_pred             ccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926          203 YECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       203 ~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      ..|+.|+.|+.+||.....                 .+..      ..  .  .. ....|+.|+.|..+||.+
T Consensus       169 ~~C~~C~~C~~~CP~~vi~-----------------~d~~------~~--~--v~-~~~~C~~C~~C~~~Cp~~  214 (259)
T cd07030         169 EDCDGCGKCVEECPRGVLE-----------------LEEG------KV--V--VE-DLEDCSLCKLCERACDAG  214 (259)
T ss_pred             hhCCChHHHHHhCCccceE-----------------ccCC------ee--E--Ee-ChhhCcCchHHHHhCCCC
Confidence            6799999999999964320                 0110      00  0  01 234799999999999954

The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w

>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit

Probab=93.03  E-value=0.021  Score=48.87  Aligned_cols=52  Identities=23%  Similarity=0.425  Sum_probs=34.1

Q ss_pred             cccccCcccC--cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          200 DGLYECILCA--CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       200 ~~~~~CI~CG--~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .....|++|+  .|..+||+......              ..++.          +  .. ....|+.|+.|..+||.++
T Consensus        59 ~~~~~C~~C~~~~C~~~CP~~ai~~~--------------~~~~~----------~--~i-~~~~C~~C~~C~~aCP~~a  111 (161)
T TIGR02951        59 YISISCNHCADPACVKNCPTGAMYKR--------------EEDGL----------V--LV-DQDKCIGCRYCVWACPYGA  111 (161)
T ss_pred             EcCccCCCcCCcchHHhCCCCCEEee--------------cCCCc----------E--EE-CHHhCCCchHHHhhCCCCC
Confidence            3457899999  99999996432100              00000          0  01 2357999999999999876


Q ss_pred             C
Q 045926          278 D  278 (302)
Q Consensus       278 ~  278 (302)
                      .
T Consensus       112 i  112 (161)
T TIGR02951       112 P  112 (161)
T ss_pred             c
Confidence            4

This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.98  E-value=0.0099  Score=61.69  Aligned_cols=21  Identities=29%  Similarity=0.613  Sum_probs=18.0

Q ss_pred             hccccccCcccCcccCCCCCc
Q 045926          198 KLDGLYECILCACCTTSCPSY  218 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~  218 (302)
                      ++.+.++|+.|+.|..+|+..
T Consensus         5 ~~~d~~~C~gC~~C~~aC~~~   25 (639)
T PRK12809          5 IAAEAAECIGCHACEIACAVA   25 (639)
T ss_pred             EEEChhhCcChhHHHHHhhhh
Confidence            455778999999999999974

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=92.85  E-value=0.046  Score=49.75  Aligned_cols=25  Identities=24%  Similarity=0.654  Sum_probs=22.1

Q ss_pred             cCCCCCccCccEEEECCEEeccccc
Q 045926          111 RSCREGICGSCAMNIGGTNTVACLK  135 (302)
Q Consensus       111 ~~C~~g~CG~C~V~VnG~~~laC~t  135 (302)
                      ..|..|+||+|+|.++|..+++|..
T Consensus       215 m~cg~G~C~~C~~~~~~~~~~~C~~  239 (250)
T PRK00054        215 MKCGIGACGACVCDTETGGKRVCKD  239 (250)
T ss_pred             ccCcCcccCcCCcccCCCCEEEeCc
Confidence            4599999999999999987799964

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.81  E-value=0.036  Score=57.66  Aligned_cols=57  Identities=18%  Similarity=0.408  Sum_probs=35.9

Q ss_pred             hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc------cccc
Q 045926          198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK------NCTA  271 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg------~C~~  271 (302)
                      ...+..+|+.|+.|+.+||.....-               .......   ..   +  .. ....|..|+      .|+.
T Consensus        80 ~~id~~~C~~C~~C~~~CP~~ai~~---------------~~~~~~~---~~---~--~~-~~~~C~~C~~~~~~p~Cv~  135 (654)
T PRK12769         80 IQVNQQKCIGCKSCVVACPFGTMQI---------------VLTPVAA---GK---V--KA-TAHKCDLCAGRENGPACVE  135 (654)
T ss_pred             EEEecccccCcChhcccCCccCeee---------------cccCCcc---cc---e--ee-ecCcCcCCCCCCCCCceec
Confidence            3456679999999999999643210               0000000   00   0  01 345899999      9999


Q ss_pred             cCCCCCC
Q 045926          272 TCPKGLD  278 (302)
Q Consensus       272 vCP~gI~  278 (302)
                      +||+++-
T Consensus       136 ~CP~~Ai  142 (654)
T PRK12769        136 NCPADAL  142 (654)
T ss_pred             cCCcCcE
Confidence            9998875

>PRK14993 tetrathionate reductase subunit B; Provisional

Probab=92.69  E-value=0.038  Score=50.78  Aligned_cols=49  Identities=22%  Similarity=0.375  Sum_probs=33.1

Q ss_pred             cccCcccCc--ccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          202 LYECILCAC--CTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       202 ~~~CI~CG~--C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ...|++|+.  |+.+||+.....               ..++.          +  .. ....|+.|+.|+.+||.++.
T Consensus        97 ~~~C~~C~~p~Cv~~CP~~Ai~~---------------~~~G~----------v--~i-d~~~CigC~~Cv~aCP~~Ai  147 (244)
T PRK14993         97 PRLCNHCDNPPCVPVCPVQATFQ---------------REDGI----------V--VV-DNKRCVGCAYCVQACPYDAR  147 (244)
T ss_pred             chhcCCcCCccCccccCCCCEEE---------------CCCCC----------E--EE-cHHHCCCHHHHHHhcCCCCC
Confidence            568999996  999999643110               00110          0  01 23479999999999999875

>PF13746 Fer4_18: 4Fe-4S dicluster domain

Probab=92.64  E-value=0.046  Score=40.36  Aligned_cols=20  Identities=30%  Similarity=0.740  Sum_probs=17.1

Q ss_pred             cccccCcccCcccCCCCCcc
Q 045926          200 DGLYECILCACCTTSCPSYW  219 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~  219 (302)
                      .....|+.||+|+.+||+..
T Consensus        47 ~~~~~CVgCgrCv~~CP~~I   66 (69)
T PF13746_consen   47 YGEGDCVGCGRCVRVCPAGI   66 (69)
T ss_pred             cCCccCCCcChHhhhcCCCC
Confidence            35678999999999999864

>PRK00783 DNA-directed RNA polymerase subunit D; Provisional

Probab=92.44  E-value=0.02  Score=52.96  Aligned_cols=47  Identities=28%  Similarity=0.635  Sum_probs=31.1

Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      ...|+.|+.|..+||.....               + .++.       . .+.    ....|+.|+.|..+||.+
T Consensus       168 ~~~C~~C~~C~~~CP~~vi~---------------~-~~~~-------~-~v~----~~~~C~~C~~Ci~~CP~~  214 (263)
T PRK00783        168 SEDCDECEKCVEACPRGVLE---------------L-KEGK-------L-VVT----DLLNCSLCKLCERACPGK  214 (263)
T ss_pred             cccCCchHHHHHhCCccccE---------------e-cCCe-------E-EEe----ChhhCCCchHHHHhCCCC
Confidence            57899999999999964310               0 0110       0 011    234799999999999964

>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]

Probab=92.34  E-value=0.018  Score=54.50  Aligned_cols=48  Identities=27%  Similarity=0.618  Sum_probs=32.8

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      +...|..||.|+.+||+....               +  ++.         .+  .. ....|+.||.|..+||..+
T Consensus       170 ~~E~c~gc~~cv~~C~~gAI~---------------~--~~~---------~l--~i-d~~~Ci~Cg~Ci~~Cp~~~  217 (317)
T COG2221         170 DEELCRGCGKCVKVCPTGAIT---------------W--DGK---------KL--KI-DGSKCIGCGKCIRACPKAA  217 (317)
T ss_pred             CHHHhchhHhHHHhCCCCcee---------------e--ccc---------eE--EE-ehhhccCccHHhhhCChhh
Confidence            456799999999999986521               1  110         01  01 3458999999999999433

>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J

Probab=92.27  E-value=0.046  Score=37.75  Aligned_cols=17  Identities=29%  Similarity=0.872  Sum_probs=12.8

Q ss_pred             cCcccccccccCCCCCC
Q 045926          262 RCRAIKNCTATCPKGLD  278 (302)
Q Consensus       262 ~C~~Cg~C~~vCP~gI~  278 (302)
                      .|+.||.|+.+||.++.
T Consensus         1 kCi~Cg~C~~~CP~~~~   17 (55)
T PF13187_consen    1 KCIGCGRCVEACPVGVI   17 (55)
T ss_dssp             C--TTTHHHHHSTTT-E
T ss_pred             CCCCcchHHHHCCccCe
Confidence            59999999999999875

>COG3894 Uncharacterized metal-binding protein [General function prediction only]

Probab=91.61  E-value=0.14  Score=51.30  Aligned_cols=44  Identities=30%  Similarity=0.694  Sum_probs=34.9

Q ss_pred             chhHHHHHHHcccccCCCcccccCCC-CCccCccEEEEC-C--E---------------Eecccccccc
Q 045926           89 GPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIG-G--T---------------NTVACLKPID  138 (302)
Q Consensus        89 g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~Vn-G--~---------------~~laC~t~v~  138 (302)
                      |+|||||++++|..      .+.-|. .|.||-|-|.|- |  +               ..|||++.|.
T Consensus        17 g~~il~aar~~gv~------i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~~v~   79 (614)
T COG3894          17 GTTILDAARRLGVY------IRSVCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQAQVL   79 (614)
T ss_pred             CchHHHHHHhhCce------EeeecCCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeeehhhc
Confidence            89999999999852      444576 599999999873 3  1               4589999997

>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit

Probab=91.57  E-value=0.059  Score=51.91  Aligned_cols=18  Identities=28%  Similarity=0.608  Sum_probs=15.7

Q ss_pred             cccCcccccccccCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...|+.||.|..+||.+.
T Consensus       213 ~~~Ci~Cg~Ci~~CP~~a  230 (341)
T TIGR02066       213 VEKCIYCGNCYTMCPAMP  230 (341)
T ss_pred             cccCCcCCchHHhCchhh
Confidence            458999999999999854

This model describes the beta subunit of sulfite reductase.

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=91.36  E-value=0.13  Score=51.33  Aligned_cols=30  Identities=13%  Similarity=0.145  Sum_probs=26.9

Q ss_pred             ccccCcccccccccCCCCCCHHHHHHHHHH
Q 045926          259 KLYRCRAIKNCTATCPKGLDPADAIHKMKT  288 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~  288 (302)
                      ....|+.||.|+++||.++.|..+++.++.
T Consensus       372 ~~~~CI~Cg~C~~vCP~~L~P~~l~ra~~~  401 (448)
T PRK05352        372 SERAMVPIGNYERVMPLDILPTQLLRALIV  401 (448)
T ss_pred             CCcceeecCcHhhcCCCCCCHHHHHHHHHc
Confidence            346899999999999999999999988874

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=90.96  E-value=0.2  Score=49.95  Aligned_cols=30  Identities=10%  Similarity=0.043  Sum_probs=26.7

Q ss_pred             ccccCcccccccccCCCCCCHHHHHHHHHH
Q 045926          259 KLYRCRAIKNCTATCPKGLDPADAIHKMKT  288 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~  288 (302)
                      ....|+.||.|+++||.++.|..+++.++.
T Consensus       371 ~~~aCI~CG~C~~vCPm~L~P~~L~~a~~~  400 (447)
T TIGR01936       371 GERAMIPIGIYERVMPLDIPPTLLLKALIA  400 (447)
T ss_pred             CccceeECChHhhcCCCCCCHHHHHHHHHc
Confidence            345799999999999999999999988874

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional

Probab=90.90  E-value=0.25  Score=43.06  Aligned_cols=19  Identities=16%  Similarity=0.260  Sum_probs=16.2

Q ss_pred             ccccCcccccccccCCCCC
Q 045926          259 KLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .++.|-.|+.|..+||...
T Consensus       151 ~~~~C~~Cr~~~~~~~~~~  169 (180)
T PRK12387        151 SFETCPECKRQKCLVPSDR  169 (180)
T ss_pred             HHhhCHHHhcccccccccc
Confidence            3568999999999999876

>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A

Probab=90.36  E-value=0.052  Score=37.18  Aligned_cols=17  Identities=35%  Similarity=0.878  Sum_probs=11.5

Q ss_pred             cccccCcccCcccCCCC
Q 045926          200 DGLYECILCACCTTSCP  216 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP  216 (302)
                      .+..+||.||.|+.+||
T Consensus        36 ~~~~~C~~Cg~C~~~CP   52 (52)
T PF13237_consen   36 IDPERCIGCGACVEVCP   52 (52)
T ss_dssp             E-TTT--TTSHHHHH-T
T ss_pred             eCcccccccChhhhhCc
Confidence            36678999999999998

>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B

Probab=90.20  E-value=0.12  Score=36.90  Aligned_cols=16  Identities=38%  Similarity=0.966  Sum_probs=11.2

Q ss_pred             cccCcccCcccCCCCC
Q 045926          202 LYECILCACCTTSCPS  217 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~  217 (302)
                      .+.|+.||.|+.+||+
T Consensus        38 ~~~C~GCg~C~~~CPv   53 (59)
T PF14697_consen   38 PDKCIGCGLCVKVCPV   53 (59)
T ss_dssp             -TT--S-SCCCCCSSS
T ss_pred             cccCcCcCcccccCCC
Confidence            5789999999999996

...

>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B

Probab=90.17  E-value=0.018  Score=45.59  Aligned_cols=51  Identities=24%  Similarity=0.457  Sum_probs=28.7

Q ss_pred             ccccCcccC--cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          201 GLYECILCA--CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       201 ~~~~CI~CG--~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ....|.+|-  .|+.+||+.....                 +..+.    .   +  .. ....|+.||.|..+||.++.
T Consensus         5 ~~~~C~hC~~ppC~~~CP~~Ai~~-----------------~~~~G----~---V--~i-d~~~CigC~~C~~aCP~~ai   57 (98)
T PF13247_consen    5 VPVQCRHCEDPPCVEACPTGAIYK-----------------DPEDG----I---V--VI-DEDKCIGCGYCVEACPYGAI   57 (98)
T ss_dssp             EEEC---BSS-HHHHHCTTTSEEE-----------------ETTTS--------E--EE--TTTCCTHHHHHHH-TTS-E
T ss_pred             eCCcCcCcCCCchhhhCCccceEE-----------------EcCCC----e---E--Ee-chhhccCchhhhhhhccCcc
Confidence            356799997  9999999865211                 11000    0   1  11 34589999999999999875

...

>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]

Probab=89.97  E-value=0.11  Score=45.32  Aligned_cols=21  Identities=33%  Similarity=0.757  Sum_probs=18.2

Q ss_pred             cccccCcccCcccCCCCCccc
Q 045926          200 DGLYECILCACCTTSCPSYWW  220 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~  220 (302)
                      .++.+||-||.|+.+||+...
T Consensus        92 In~grCIfCg~C~e~CPt~Al  112 (172)
T COG1143          92 INLGRCIFCGLCVEVCPTGAL  112 (172)
T ss_pred             eccccccccCchhhhCchhhh
Confidence            357799999999999998764

>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B

Probab=89.81  E-value=0.03  Score=39.67  Aligned_cols=17  Identities=24%  Similarity=0.726  Sum_probs=11.8

Q ss_pred             cCcccccccccCCCCCC
Q 045926          262 RCRAIKNCTATCPKGLD  278 (302)
Q Consensus       262 ~C~~Cg~C~~vCP~gI~  278 (302)
                      .|+.||.|+.+||+++.
T Consensus         1 ~C~~Cg~C~~~CP~~~~   17 (61)
T PF13534_consen    1 ACTQCGYCVPACPSYIA   17 (61)
T ss_dssp             T----STTGGGSHHHHH
T ss_pred             CCCCCCcCcccCCCccc
Confidence            49999999999998887

...

>PF13484 Fer4_16: 4Fe-4S double cluster binding domain

Probab=89.79  E-value=0.07  Score=38.45  Aligned_cols=18  Identities=28%  Similarity=0.722  Sum_probs=15.7

Q ss_pred             cCcccccccccCCCCCCH
Q 045926          262 RCRAIKNCTATCPKGLDP  279 (302)
Q Consensus       262 ~C~~Cg~C~~vCP~gI~~  279 (302)
                      .|..||.|+++||.++-.
T Consensus         1 ~C~~C~~C~~~CP~~AI~   18 (67)
T PF13484_consen    1 FCITCGKCAEACPTGAIS   18 (67)
T ss_pred             CCcchhHHHHhCcHhhcc
Confidence            499999999999998853

>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]

Probab=89.51  E-value=0.11  Score=46.53  Aligned_cols=52  Identities=23%  Similarity=0.363  Sum_probs=34.7

Q ss_pred             cccccCccc--CcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          200 DGLYECILC--ACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       200 ~~~~~CI~C--G~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .-...|.+|  --|+.+||+.....              .-.|+-          +  .. ....|+.||.|..+||.|+
T Consensus        64 ~~~~~C~HC~~ppCv~vCPtgA~~k--------------~~~dGi----------V--~v-d~d~CIGC~yCi~ACPyga  116 (203)
T COG0437          64 YLSISCMHCEDPPCVKVCPTGALFK--------------REEDGI----------V--LV-DKDLCIGCGYCIAACPYGA  116 (203)
T ss_pred             EecccccCCCCCcccccCCCcceEE--------------ecCCCE----------E--Ee-cCCcccCchHHHhhCCCCC
Confidence            334579999  67999999864210              001221          0  11 3468999999999999999


Q ss_pred             C
Q 045926          278 D  278 (302)
Q Consensus       278 ~  278 (302)
                      .
T Consensus       117 ~  117 (203)
T COG0437         117 P  117 (203)
T ss_pred             c
Confidence            6

>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]

Probab=89.40  E-value=0.27  Score=47.30  Aligned_cols=65  Identities=20%  Similarity=0.383  Sum_probs=36.3

Q ss_pred             ccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926          203 YECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       203 ~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      +.|-.|.+|..+||+........+.+.--+. +.....+..  ..+....+.  . .++   .|+-|..+||.+
T Consensus       185 ~~Cg~C~~CldaCPt~Al~~~~~~~~~~cis-~lt~~~~~~--p~e~r~~~~--n-~iy---gCd~C~~vCPwn  249 (337)
T COG1600         185 DHCGSCTRCLDACPTGALVAPYTVDARRCIS-YLTIEKGGA--PEEFRPLIG--N-RIY---GCDICQKVCPWN  249 (337)
T ss_pred             ccChhhHHHHhhCCcccccCCCccchhHHhh-hhhhhccCC--cHHHHHhcc--C-cee---cCchHHHhCCcc
Confidence            6799999999999998765443333322211 111111111  122222121  1 334   789999999976

>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]

Probab=89.27  E-value=0.12  Score=44.54  Aligned_cols=21  Identities=29%  Similarity=0.754  Sum_probs=18.2

Q ss_pred             cccccCcccCcccCCCCCccc
Q 045926          200 DGLYECILCACCTTSCPSYWW  220 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~  220 (302)
                      .|+.+||-||.|+.+||+-..
T Consensus       147 IDmtkCIyCG~CqEaCPvdai  167 (212)
T KOG3256|consen  147 IDMTKCIYCGFCQEACPVDAI  167 (212)
T ss_pred             ccceeeeeecchhhhCCccce
Confidence            468899999999999998653

>PRK15449 ferredoxin-like protein FixX; Provisional

Probab=88.91  E-value=0.11  Score=40.99  Aligned_cols=20  Identities=10%  Similarity=0.067  Sum_probs=17.0

Q ss_pred             ccccCcccccccccCCCCCC
Q 045926          259 KLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ....|+.||.|..+||.+..
T Consensus        59 d~e~CigCg~C~~~C~~~~~   78 (95)
T PRK15449         59 DYAGCLECGTCRILGLGSAL   78 (95)
T ss_pred             cCCCCCcchhhhhhcCCCCc
Confidence            34589999999999998864

>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=88.44  E-value=0.079  Score=36.35  Aligned_cols=17  Identities=29%  Similarity=0.837  Sum_probs=10.8

Q ss_pred             cCcccccccccCCCCCC
Q 045926          262 RCRAIKNCTATCPKGLD  278 (302)
Q Consensus       262 ~C~~Cg~C~~vCP~gI~  278 (302)
                      +|+.||.|+.+||.++-
T Consensus         1 ~C~~C~~C~~~CP~~~i   17 (52)
T PF12838_consen    1 KCIGCGACVEACPTGAI   17 (52)
T ss_dssp             C-SS--HHHHH-TTHHC
T ss_pred             CCCCcCchHHhcCcccc
Confidence            59999999999997653

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.

>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG

Probab=88.39  E-value=0.19  Score=50.00  Aligned_cols=20  Identities=35%  Similarity=0.786  Sum_probs=17.6

Q ss_pred             cccCcccccccccCCCCCCH
Q 045926          260 LYRCRAIKNCTATCPKGLDP  279 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI~~  279 (302)
                      ...|+.|+.|+.+||.+++.
T Consensus       230 ~~~Ci~C~~Cv~vCP~gi~~  249 (434)
T TIGR02745       230 LGDCIDCNLCVQVCPTGIDI  249 (434)
T ss_pred             CCCCCChhhhHHhCCCCCEe
Confidence            46899999999999999853

Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.

>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]

Probab=88.05  E-value=0.39  Score=43.86  Aligned_cols=35  Identities=26%  Similarity=0.342  Sum_probs=26.3

Q ss_pred             ccccCcccccccccCCCC-CC----HHHHHHHHHHHHhhc
Q 045926          259 KLYRCRAIKNCTATCPKG-LD----PADAIHKMKTKHMLS  293 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~g-I~----~~~~I~~lR~~l~~~  293 (302)
                      .++.|+.||.|+.+||.- .+    -..++..+.+.+.+.
T Consensus       140 ~~~~CI~Cg~C~s~CP~~~~~~~f~GPa~l~~a~R~~~D~  179 (234)
T COG0479         140 ELSECILCGCCTAACPSIWWNPDFLGPAALRQAYRFLADS  179 (234)
T ss_pred             hhhhccccchhhhhCCccccccCCcCHHHHHHHHHHhcCC
Confidence            678999999999999943 33    245677777777665

>PRK01777 hypothetical protein; Validated

Probab=88.04  E-value=4.2  Score=31.96  Aligned_cols=64  Identities=11%  Similarity=0.042  Sum_probs=40.1

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccC-CCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETD-SSLSYRRSCREGICGSCAMNIGGTNTVACLKPI  137 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~d-ptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v  137 (302)
                      +++|.|.=--|+      .+....+++++ |+|+-||+...|.... |.+.+.         ...|-|||+.+.. .+.+
T Consensus         3 ~i~v~V~ya~~~------~~~~~~l~vp~-GtTv~dal~~sgi~~~~pei~~~---------~~~vgI~Gk~v~~-d~~L   65 (95)
T PRK01777          3 KIRVEVVYALPE------RQYLQRLTLQE-GATVEEAIRASGLLELRTDIDLA---------KNKVGIYSRPAKL-TDVL   65 (95)
T ss_pred             eeEEEEEEECCC------ceEEEEEEcCC-CCcHHHHHHHcCCCccCcccccc---------cceEEEeCeECCC-CCcC
Confidence            566666653332      34557788888 9999999999874211 222221         1478899987643 4455


Q ss_pred             cC
Q 045926          138 DG  139 (302)
Q Consensus       138 ~~  139 (302)
                      .+
T Consensus        66 ~d   67 (95)
T PRK01777         66 RD   67 (95)
T ss_pred             CC
Confidence            54

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

Probab=88.00  E-value=0.38  Score=43.39  Aligned_cols=29  Identities=24%  Similarity=0.541  Sum_probs=24.1

Q ss_pred             cccccCCCCCccCccEEEECCEEeccccc
Q 045926          107 LSYRRSCREGICGSCAMNIGGTNTVACLK  135 (302)
Q Consensus       107 L~~~~~C~~g~CG~C~V~VnG~~~laC~t  135 (302)
                      +.-+-.|..|+||+|.|..+|...++|..
T Consensus       210 ~~~~m~Cg~G~C~~C~~~~~~~~~~~C~~  238 (243)
T cd06192         210 NNSPMCCGIGICGACTIETKHGVKRLCKD  238 (243)
T ss_pred             CCccccCccccccceEEEeCCCeEEEeCC
Confidence            44455699999999999998887899974

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=87.63  E-value=0.38  Score=43.68  Aligned_cols=26  Identities=31%  Similarity=0.833  Sum_probs=21.3

Q ss_pred             ccCCCCCccCccEEEECCEEeccccc
Q 045926          110 RRSCREGICGSCAMNIGGTNTVACLK  135 (302)
Q Consensus       110 ~~~C~~g~CG~C~V~VnG~~~laC~t  135 (302)
                      +-.|..|+||+|+|+..|...+.|..
T Consensus       213 ~m~Cg~G~C~~C~~~~~~~~~~~C~~  238 (248)
T cd06219         213 IMVDGTGMCGACRVTVGGETKFACVD  238 (248)
T ss_pred             cccCccceeeeEEEEeCCCEEEEeCc
Confidence            34699999999999998855678864

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=87.50  E-value=2.1  Score=30.69  Aligned_cols=47  Identities=15%  Similarity=0.180  Sum_probs=31.4

Q ss_pred             EecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEe---ccccccccCCCCCceEE
Q 045926           83 VDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNT---VACLKPIDGDTSKPTII  147 (302)
Q Consensus        83 v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~---laC~t~v~~~~~~~~~I  147 (302)
                      +++.+ |.||.++|..++.  .+.             ..+|++||..+   ..+.+.+.+  ++.+.|
T Consensus        10 ~~~~~-~~tl~~lL~~l~~--~~~-------------~vav~vNg~iv~r~~~~~~~l~~--gD~vei   59 (66)
T PRK05659         10 RELPD-GESVAALLAREGL--AGR-------------RVAVEVNGEIVPRSQHASTALRE--GDVVEI   59 (66)
T ss_pred             EEcCC-CCCHHHHHHhcCC--CCC-------------eEEEEECCeEeCHHHcCcccCCC--CCEEEE
Confidence            34445 8999999998763  111             15799999644   478888887  344443

>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]

Probab=87.36  E-value=0.29  Score=43.32  Aligned_cols=32  Identities=31%  Similarity=0.594  Sum_probs=26.0

Q ss_pred             cccCcccccccccCCCCCC----HHHHHHHHHHHHh
Q 045926          260 LYRCRAIKNCTATCPKGLD----PADAIHKMKTKHM  291 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI~----~~~~I~~lR~~l~  291 (302)
                      +..|.+||.|+..||.+.-    +.++|+.++.-+.
T Consensus        38 l~~C~QCG~CT~sCPs~r~t~y~pR~ii~~~~~g~~   73 (195)
T COG1150          38 LEGCYQCGTCTGSCPSGRFTDYSPRKIIRKARLGLV   73 (195)
T ss_pred             HhHhhccCcccCCCCCcccCCCCHHHHHHHHHcccH
Confidence            4579999999999998764    8888888876544

>PRK05802 hypothetical protein; Provisional

Probab=86.90  E-value=0.52  Score=44.92  Aligned_cols=33  Identities=36%  Similarity=0.829  Sum_probs=26.8

Q ss_pred             CcccccCCCCCccCccEEEECCEE-ecccccccc
Q 045926          106 SLSYRRSCREGICGSCAMNIGGTN-TVACLKPID  138 (302)
Q Consensus       106 tL~~~~~C~~g~CG~C~V~VnG~~-~laC~t~v~  138 (302)
                      +|.-+-.|..|+||+|+|.++|.. .+.|...++
T Consensus       285 Sle~~M~CG~G~Cg~C~v~~~g~~~~r~Ck~q~~  318 (320)
T PRK05802        285 SNNAKMCCGEGICGACTVRYGGHKVKRLCKVQVD  318 (320)
T ss_pred             eCCCeeeCcCccCCeeEEEECCEEEEEEeeeecC
Confidence            455566799999999999999853 588998775

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=86.21  E-value=0.48  Score=43.04  Aligned_cols=42  Identities=19%  Similarity=0.408  Sum_probs=29.6

Q ss_pred             HHHHHHHcccccCCCccccc--CCCCCccCccEEEEC---CEEeccccc
Q 045926           92 VLDALQKIKAETDSSLSYRR--SCREGICGSCAMNIG---GTNTVACLK  135 (302)
Q Consensus        92 vLdal~~i~~~~dptL~~~~--~C~~g~CG~C~V~Vn---G~~~laC~t  135 (302)
                      +.++|++.|.  ...++...  -|..|+||.|.+...   |.+.++|..
T Consensus       195 ~~~~L~~~Gv--~~~~~~~~~~~~~~g~c~~c~~~~~~~~~~~~~~c~~  241 (246)
T cd06218         195 VAELAAERGV--PCQVSLEERMACGIGACLGCVVKTKDDEGGYKRVCKD  241 (246)
T ss_pred             HHHHHHhcCC--CEEEEecccccCccceecccEEEeecCCCccEEEeCc
Confidence            4444555542  33344443  399999999999997   999999974

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N

Probab=85.86  E-value=0.035  Score=38.63  Aligned_cols=18  Identities=33%  Similarity=0.687  Sum_probs=11.9

Q ss_pred             cccCcccccccccCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI  277 (302)
                      +..|+.||.|..+||...
T Consensus         2 ~~~Ci~Cg~C~~~CP~~~   19 (57)
T PF13183_consen    2 LSKCIRCGACTSVCPVYR   19 (57)
T ss_dssp             HHC--S-SHHHHCSHHHH
T ss_pred             HHHccCccChHHHChhhh
Confidence            357999999999999433

...

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed

Probab=85.64  E-value=0.59  Score=43.46  Aligned_cols=43  Identities=28%  Similarity=0.529  Sum_probs=29.8

Q ss_pred             HHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccc
Q 045926           92 VLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACL  134 (302)
Q Consensus        92 vLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~  134 (302)
                      +.++|++.+....-+|.-+-.|..|+||.|+|...|...+.|.
T Consensus       196 v~~~l~~~gv~~~~sle~~M~CG~G~C~~C~v~~~~~~~~~C~  238 (281)
T PRK06222        196 VAELTKPYGIKTIVSLNPIMVDGTGMCGACRVTVGGETKFACV  238 (281)
T ss_pred             HHHHHHhcCCCEEEECcccccCcccccceeEEEECCCEEEEeC
Confidence            3344444443223356667789999999999999885567887

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=85.63  E-value=0.5  Score=42.43  Aligned_cols=21  Identities=43%  Similarity=1.023  Sum_probs=18.3

Q ss_pred             CCCCCccCccEEEECCEEecccc
Q 045926          112 SCREGICGSCAMNIGGTNTVACL  134 (302)
Q Consensus       112 ~C~~g~CG~C~V~VnG~~~laC~  134 (302)
                      .|..|+||+|.|..+|+  ++|.
T Consensus       202 ~cg~g~C~~C~v~~~~~--~~c~  222 (233)
T cd06220         202 KCGIGICGSCCIDPTGL--RVCR  222 (233)
T ss_pred             cCcCCCcCccEeccCCe--EEeC
Confidence            49999999999999984  6775

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>COG1145 NapF Ferredoxin [Energy production and conversion]

Probab=85.58  E-value=0.25  Score=37.71  Aligned_cols=19  Identities=26%  Similarity=0.691  Sum_probs=16.3

Q ss_pred             ccccCcccccccccCCCCC
Q 045926          259 KLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ....|+.||.|+.+||.++
T Consensus        27 ~~~~Ci~Cg~C~~~CP~~a   45 (99)
T COG1145          27 DAEKCIGCGLCVKVCPTGA   45 (99)
T ss_pred             CccccCCCCCchhhCCHHH
Confidence            3457999999999999984

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=85.13  E-value=0.22  Score=51.90  Aligned_cols=25  Identities=16%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             HHhhccccccCcccCcccCCCCCcc
Q 045926          195 DRKKLDGLYECILCACCTTSCPSYW  219 (302)
Q Consensus       195 ~~~~~~~~~~CI~CG~C~~aCP~~~  219 (302)
                      ...+.+|.++||+||+|+.+|...+
T Consensus       608 ~~~i~~D~~kCI~CgrCv~~C~ev~  632 (652)
T PRK12814        608 NGDIRFEREKCVDCGICVRTLEEYG  632 (652)
T ss_pred             CCCeEeccccccCchHHHHHHHHhc
Confidence            3457789999999999999999776

>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []

Probab=84.77  E-value=0.65  Score=30.63  Aligned_cols=24  Identities=25%  Similarity=0.720  Sum_probs=18.5

Q ss_pred             cCCCCCccCccEEEECCE--Eecccc
Q 045926          111 RSCREGICGSCAMNIGGT--NTVACL  134 (302)
Q Consensus       111 ~~C~~g~CG~C~V~VnG~--~~laC~  134 (302)
                      -.|..|+|+.|.|.+.+.  ..+.|.
T Consensus         4 M~CG~G~C~~C~v~~~~~~~~~~vC~   29 (40)
T PF10418_consen    4 MACGVGACGGCVVPVKDGDGYKRVCK   29 (40)
T ss_dssp             -SSSSSSS-TTEEECSSTTSEEETTT
T ss_pred             ccCCCcEeCCcEeeeecCCcCEEEeC
Confidence            469999999999999864  667775

The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.

>PLN00071 photosystem I subunit VII; Provisional

Probab=84.65  E-value=0.29  Score=36.75  Aligned_cols=19  Identities=26%  Similarity=0.920  Sum_probs=16.0

Q ss_pred             cccCcccCcccCCCCCccc
Q 045926          202 LYECILCACCTTSCPSYWW  220 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~  220 (302)
                      ...|+.||.|+.+||+...
T Consensus        45 ~~~C~~Cg~C~~~CP~~Ai   63 (81)
T PLN00071         45 TEDCVGCKRCESACPTDFL   63 (81)
T ss_pred             CCcCcChhhHHhhcCCccc
Confidence            4579999999999997653

>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family

Probab=84.41  E-value=0.25  Score=45.55  Aligned_cols=18  Identities=22%  Similarity=0.641  Sum_probs=16.1

Q ss_pred             cccCcccccccccCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...|+.|+.|.++||.++
T Consensus       200 ~~~C~~C~~C~~vCP~~~  217 (255)
T TIGR02163       200 REKCTNCMDCFNVCPEPQ  217 (255)
T ss_pred             cccCeEcCCccCcCCCCc
Confidence            458999999999999885

Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=84.25  E-value=0.49  Score=49.81  Aligned_cols=28  Identities=25%  Similarity=0.440  Sum_probs=23.3

Q ss_pred             cccCcccccccccCCCCCCHHHHHHHHH
Q 045926          260 LYRCRAIKNCTATCPKGLDPADAIHKMK  287 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI~~~~~I~~lR  287 (302)
                      ...|+.||.|+.+||.++.+..+.+.++
T Consensus       369 e~~CI~CG~Cv~aCP~~llP~~l~~~~~  396 (695)
T PRK05035        369 EQPCIRCGACADACPASLLPQQLYWFAK  396 (695)
T ss_pred             hhhcCCcccHHHHCCccchhhhHHHhhh
Confidence            4689999999999999998877665444

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=83.82  E-value=0.44  Score=44.50  Aligned_cols=44  Identities=23%  Similarity=0.419  Sum_probs=30.7

Q ss_pred             HHHHHHHcccc---cCCCcccccCCCCCccCccEEEECCEEeccccc
Q 045926           92 VLDALQKIKAE---TDSSLSYRRSCREGICGSCAMNIGGTNTVACLK  135 (302)
Q Consensus        92 vLdal~~i~~~---~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t  135 (302)
                      +.++|...|..   .--+|.++-.|..|.||+|.|..++-..++|..
T Consensus       227 v~~~L~~~Gv~~~~i~~~l~~~m~cg~g~c~~c~~~~~~~~~~~c~~  273 (289)
T PRK08345        227 VFKELINRGYRPERIYVTLERRMRCGIGKCGHCIVGTSTSIKYVCKD  273 (289)
T ss_pred             HHHHHHHcCCCHHHEEEEehhcccccCcccCCCccCCCCcceEEeCC
Confidence            55555555421   233577778899999999999988754578863

>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed

Probab=83.66  E-value=0.39  Score=37.94  Aligned_cols=18  Identities=39%  Similarity=0.979  Sum_probs=16.0

Q ss_pred             cccCcccccccccCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...|+.||.|+.+||.++
T Consensus        15 ~~~Ci~C~~Cv~aCP~~a   32 (103)
T PRK09626         15 ESRCKACDICVSVCPAGV   32 (103)
T ss_pred             cccccCCcchhhhcChhh
Confidence            458999999999999876

>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]

Probab=83.54  E-value=0.34  Score=44.20  Aligned_cols=60  Identities=28%  Similarity=0.601  Sum_probs=42.2

Q ss_pred             hhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926          197 KKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       197 ~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      ..+.+-.-|+.||.|.++||+....   ..||.                           . ....|..||.|...||+.
T Consensus       184 ~ll~qg~~C~G~~TC~A~CP~~ai~---c~Gc~---------------------------g-~~~~~~~~Ga~~v~~~rs  232 (247)
T COG1941         184 CLLEQGLPCMGCGTCAASCPSRAIP---CRGCR---------------------------G-NIPRCIKCGACFVSCPRS  232 (247)
T ss_pred             eeecCCCcccCchhhhccCCccCCc---ccCCc---------------------------C-CcccchhhhHHHHHHhHH
Confidence            3444455899999999999986521   11111                           0 345799999999999999


Q ss_pred             CCHHHHHHHHHH
Q 045926          277 LDPADAIHKMKT  288 (302)
Q Consensus       277 I~~~~~I~~lR~  288 (302)
                      +-+ +++++|..
T Consensus       233 ~~~-ei~~~l~~  243 (247)
T COG1941         233 KGP-EIIEELKD  243 (247)
T ss_pred             hhH-HHHHHhhh
Confidence            876 77766643

>PRK08222 hydrogenase 4 subunit H; Validated

Probab=83.39  E-value=1  Score=39.48  Aligned_cols=18  Identities=39%  Similarity=0.947  Sum_probs=15.7

Q ss_pred             cccCcccCcccCCCCCcc
Q 045926          202 LYECILCACCTTSCPSYW  219 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~  219 (302)
                      ...|+.||.|+.+||+..
T Consensus        72 ~~~C~~Cg~C~~~CPt~A   89 (181)
T PRK08222         72 LGRCIYCGRCEEVCPTRA   89 (181)
T ss_pred             cCcCcCCCCcccccCcCe
Confidence            458999999999999854

>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC

Probab=82.60  E-value=0.5  Score=35.43  Aligned_cols=19  Identities=21%  Similarity=0.646  Sum_probs=16.5

Q ss_pred             ccccCcccccccccCCCCC
Q 045926          259 KLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ....|+.||.|+.+||.++
T Consensus         6 ~~~~Ci~C~~Cv~~CP~~~   24 (80)
T TIGR03048         6 IYDTCIGCTQCVRACPTDV   24 (80)
T ss_pred             cCCcCcCcchHHHHCCccc
Confidence            3468999999999999875

Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=82.49  E-value=0.75  Score=45.72  Aligned_cols=26  Identities=23%  Similarity=0.432  Sum_probs=22.0

Q ss_pred             ccccCcccccccccCCCCCCHHHHHH
Q 045926          259 KLYRCRAIKNCTATCPKGLDPADAIH  284 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~gI~~~~~I~  284 (302)
                      ....|+.||.|+.+||.++.+..+++
T Consensus       361 ~~~~Ci~Cg~C~~vCP~~l~p~~l~~  386 (435)
T TIGR01945       361 PEKPCIRCGKCVQVCPMNLLPQQLNW  386 (435)
T ss_pred             cCCcCcCccchhhhCccchhhHHHHH
Confidence            55799999999999999988766544

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>PRK02651 photosystem I subunit VII; Provisional

Probab=82.24  E-value=0.31  Score=36.43  Aligned_cols=28  Identities=32%  Similarity=0.821  Sum_probs=19.5

Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHH
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPA  229 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~  229 (302)
                      ...|+.||.|+.+||.....-..|++|+
T Consensus        45 ~~~C~~Cg~C~~~CP~~ai~~~~~~~~~   72 (81)
T PRK02651         45 TEDCVGCKRCETACPTDFLSIRVYLGAE   72 (81)
T ss_pred             CCcCCChhhhhhhcCCCceEEEEEeccc
Confidence            3579999999999997543223355543

>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific

Probab=82.22  E-value=0.41  Score=36.55  Aligned_cols=19  Identities=16%  Similarity=0.532  Sum_probs=16.2

Q ss_pred             ccccCcccccccccCCCCC
Q 045926          259 KLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ....|+.||.|+.+||.++
T Consensus        19 ~~~~Ci~C~~Cv~~CP~~~   37 (91)
T TIGR02936        19 DQEKCIGCGRCYKVCGRDV   37 (91)
T ss_pred             CHhHCCCcchHHHHcChhh
Confidence            3458999999999999775

Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.

>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional

Probab=82.21  E-value=0.5  Score=38.30  Aligned_cols=18  Identities=28%  Similarity=0.931  Sum_probs=16.2

Q ss_pred             cccCcccccccccCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...|+.||.|+.+||.++
T Consensus        41 ~~~Ci~C~~C~~~CP~~a   58 (120)
T PRK08348         41 VDKCVGCRMCVTVCPAGV   58 (120)
T ss_pred             cccCcCcccHHHHCCccc
Confidence            458999999999999876

>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]

Probab=81.86  E-value=0.69  Score=47.29  Aligned_cols=28  Identities=29%  Similarity=0.615  Sum_probs=24.8

Q ss_pred             cccCcccccccccCCCCCCHHHHHHHHH
Q 045926          260 LYRCRAIKNCTATCPKGLDPADAIHKMK  287 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI~~~~~I~~lR  287 (302)
                      ...|+.||.|+.+||.++++.+.+....
T Consensus       399 a~kc~~cG~C~~~CP~~l~i~eam~~A~  426 (772)
T COG1152         399 ARKCTYCGNCMRACPNELDIPEAMEYAA  426 (772)
T ss_pred             HHhcccccchhccCCcccchHHHHHHhh
Confidence            4689999999999999999999887654

>CHL00065 psaC photosystem I subunit VII

Probab=81.84  E-value=0.48  Score=35.57  Aligned_cols=18  Identities=22%  Similarity=0.720  Sum_probs=15.9

Q ss_pred             cccCcccccccccCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...|+.||.|+.+||.++
T Consensus         8 ~~~Ci~Cg~C~~~CP~~~   25 (81)
T CHL00065          8 YDTCIGCTQCVRACPTDV   25 (81)
T ss_pred             cccCCChhHHHHHCCccc
Confidence            358999999999999876

>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B

Probab=81.69  E-value=0.8  Score=37.01  Aligned_cols=29  Identities=28%  Similarity=0.612  Sum_probs=19.4

Q ss_pred             cccCccc--ccccccCCCCCCHHHHHHHHHH
Q 045926          260 LYRCRAI--KNCTATCPKGLDPADAIHKMKT  288 (302)
Q Consensus       260 ~~~C~~C--g~C~~vCP~gI~~~~~I~~lR~  288 (302)
                      ...|+.|  --|+..||.++|+.+.|..++.
T Consensus        21 a~rC~~c~~~pC~~aCP~~~dip~~i~~i~~   51 (111)
T PF14691_consen   21 ASRCLQCEDPPCQAACPAHIDIPEYIRLIRE   51 (111)
T ss_dssp             HHHS---TT-HHHHTSTT---HHHHHHHHHC
T ss_pred             HhhccCCCCCCcccCCCCCCcHHHHHHHHHC
Confidence            4589999  6899999999999999998874

>PRK05888 NADH dehydrogenase subunit I; Provisional

Probab=81.68  E-value=0.6  Score=40.02  Aligned_cols=19  Identities=42%  Similarity=0.705  Sum_probs=16.4

Q ss_pred             ccccCcccccccccCCCCC
Q 045926          259 KLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ....|+.||.|+.+||.++
T Consensus        56 ~~~~Ci~C~~C~~~CP~~a   74 (164)
T PRK05888         56 GEERCIACKLCAAICPADA   74 (164)
T ss_pred             CCccCCcccChHHHcCccc
Confidence            4458999999999999875

>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]

Probab=81.46  E-value=0.57  Score=40.56  Aligned_cols=19  Identities=32%  Similarity=0.623  Sum_probs=16.9

Q ss_pred             cccCcccccccccCCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ...|+.||.|+.+||.|+-
T Consensus        81 ~ekCiGC~~C~~aCPfGai   99 (165)
T COG1142          81 EEKCIGCKLCVVACPFGAI   99 (165)
T ss_pred             hhhccCcchhhhcCCcceE
Confidence            3589999999999999985

>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C

Probab=81.42  E-value=1.3  Score=37.07  Aligned_cols=19  Identities=32%  Similarity=0.864  Sum_probs=16.3

Q ss_pred             ccccCcccCcccCCCCCcc
Q 045926          201 GLYECILCACCTTSCPSYW  219 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~  219 (302)
                      .+..|..||.|..+||...
T Consensus        44 ~~~~C~~Cg~C~~~CP~~i   62 (144)
T TIGR03290        44 DLWMCTTCYTCQERCPRDV   62 (144)
T ss_pred             CCCcCcCcCchhhhcCCCC
Confidence            3568999999999999865

The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.

>COG1146 Ferredoxin [Energy production and conversion]

Probab=80.43  E-value=0.61  Score=33.86  Aligned_cols=22  Identities=32%  Similarity=0.623  Sum_probs=18.1

Q ss_pred             hccccccCcccCcccCCCCCcc
Q 045926          198 KLDGLYECILCACCTTSCPSYW  219 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~  219 (302)
                      .....+.|+.||.|..+||+..
T Consensus        36 ~~~~~e~C~~C~~C~~~CP~~a   57 (68)
T COG1146          36 VVARPEECIDCGLCELACPVGA   57 (68)
T ss_pred             eEeccccCccchhhhhhCCcce
Confidence            3456678999999999999863

>CHL00014 ndhI NADH dehydrogenase subunit I

Probab=80.42  E-value=0.72  Score=39.78  Aligned_cols=19  Identities=32%  Similarity=0.747  Sum_probs=16.6

Q ss_pred             cccCcccccccccCCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ...|+.||.|+.+||.++.
T Consensus        58 ~~~Ci~Cg~C~~aCP~~~~   76 (167)
T CHL00014         58 FDKCIACEVCVRVCPIDLP   76 (167)
T ss_pred             cccCCCcCcHHHhCCCCCc
Confidence            4579999999999999863

>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein

Probab=80.18  E-value=0.81  Score=40.15  Aligned_cols=18  Identities=33%  Similarity=0.807  Sum_probs=16.3

Q ss_pred             cccCcccccccccCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...|+.||.|+.+||.++
T Consensus        61 ~~kCi~Cg~C~~aCP~~a   78 (183)
T TIGR00403        61 FDKCIACEVCVRVCPINL   78 (183)
T ss_pred             cccCcCcCChhhhCCCCc
Confidence            458999999999999986

>PF13459 Fer4_15: 4Fe-4S single cluster domain

Probab=80.02  E-value=0.61  Score=33.60  Aligned_cols=19  Identities=26%  Similarity=0.653  Sum_probs=16.3

Q ss_pred             ccccCcccCcccCCCCCcc
Q 045926          201 GLYECILCACCTTSCPSYW  219 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~  219 (302)
                      +...|+.||.|+..||.+.
T Consensus         4 D~~~C~gcg~C~~~aP~vF   22 (65)
T PF13459_consen    4 DRDRCIGCGLCVELAPEVF   22 (65)
T ss_pred             ecccCcCccHHHhhCCccE
Confidence            4578999999999999654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
1yq3_B	252	Avian Respiratory Complex Ii With Oxaloacetate And		9e-90
3abv_B	252	Crystal Structure Of Porcine Heart Mitochondrial Co		2e-86
1zoy_B	252	Crystal Structure Of Mitochondrial Respiratory Comp		2e-86
3vr8_B	282	Mitochondrial Rhodoquinol-Fumarate Reductase From T		7e-79
1nek_B	238	Complex Ii (Succinate Dehydrogenase) From E. Coli W		2e-64
2wp9_B	238	Crystal Structure Of The E. Coli Succinate:quinone		3e-64
1kf6_B	243	E. Coli Quinol-Fumarate Reductase With Bound Inhibi		4e-31
2bs2_B	241	Quinol:fumarate Reductase From Wolinella Succinogen		3e-24
1qlb_B	239	Respiratory Complex Ii-Like Fumarate Reductase From		4e-24

>pdb|1YQ3|B Chain B, Avian Respiratory Complex Ii With Oxaloacetate And Ubiquinone Length = 252

Iteration: 1
 Score =  326 bits (836), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 155/230 (67%), Positives = 183/230 (79%), Gaps = 2/230 (0%)
Query: 59  MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
           +K+F IYRW+PD+P  KP +Q+Y VDL++CGPMVLDAL KIK E DS+L++RRSCREGIC
Sbjct: 11  IKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGIC 70
Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
           GSCAMNI G NT+AC K ID D SK T I PLPHM+V+KDLV DL+NFY QYKSIEP+LK
Sbjct: 71  GSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLK 130
Query: 179 TNMVPKDGRE-YRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRW 237
                K G+E Y QS  DR+KLDGLYECILCACC+TSCPSYWWN ++YLGPA L+ AYRW
Sbjct: 131 KKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRW 190
Query: 238 ICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
           + DSRD+ TEERL  L +D   LYRC  I NCT TCPKGL+P  AI ++K
Sbjct: 191 MIDSRDDYTEERLAQL-QDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIK 239

>pdb|3ABV|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex Ii Bound With N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide Length = 252

Iteration: 1
 Score =  315 bits (808), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 147/230 (63%), Positives = 181/230 (78%), Gaps = 2/230 (0%)
Query: 59  MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
           +K+F IYRW+PD+   KP +Q+Y +DL+ CGPMVLDAL KIK E DS+L++RRSCREGIC
Sbjct: 11  IKKFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLTFRRSCREGIC 70
Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
           GSCAMNI G NT+AC + ID +  K + I PLPHM+VIKDLV DL+NFY QYKSIEP+LK
Sbjct: 71  GSCAMNINGGNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLK 130
Query: 179 TNMVPKDGR-EYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRW 237
                ++G+ +Y QS  +R+KLDGLYECILCACC+TSCPSYWWN ++YLGPA L+ AYRW
Sbjct: 131 KKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRW 190
Query: 238 ICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
           + DSRD+ TEERL  L +D   LYRC  I NCT TCPKGL+P  AI ++K
Sbjct: 191 MIDSRDDFTEERLAKL-QDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIK 239

>pdb|1ZOY|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii From Porcine Heart At 2.4 Angstroms Length = 252

Iteration: 1
 Score =  315 bits (808), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 147/230 (63%), Positives = 181/230 (78%), Gaps = 2/230 (0%)
Query: 59  MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
           +K+F IYRW+PD+   KP +Q+Y +DL+ CGPMVLDAL KIK E DS+L++RRSCREGIC
Sbjct: 11  IKKFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLTFRRSCREGIC 70
Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
           GSCAMNI G NT+AC + ID +  K + I PLPHM+VIKDLV DL+NFY QYKSIEP+LK
Sbjct: 71  GSCAMNINGGNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLK 130
Query: 179 TNMVPKDGR-EYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRW 237
                ++G+ +Y QS  +R+KLDGLYECILCACC+TSCPSYWWN ++YLGPA L+ AYRW
Sbjct: 131 KKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRW 190
Query: 238 ICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
           + DSRD+ TEERL  L +D   LYRC  I NCT TCPKGL+P  AI ++K
Sbjct: 191 MIDSRDDFTEERLAKL-QDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIK 239

>pdb|3VR8|B Chain B, Mitochondrial Rhodoquinol-Fumarate Reductase From The Parasitic Nematode Ascaris Suum Length = 282

Iteration: 1
 Score =  290 bits (742), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 142/233 (60%), Positives = 174/233 (74%), Gaps = 4/233 (1%)
Query: 57  KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREG 116
           K +K F IYR+NP+ P +KP LQ + VDL +CG MVLDAL KIK E D +L++RRSCREG
Sbjct: 33  KRIKTFEIYRFNPEEPGAKPKLQKFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREG 92
Query: 117 ICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPW 176
           ICGSCAMNI G NT+AC+  ID +TSK T I PLPHMFVIKDLV D+  FY QY SI+PW
Sbjct: 93  ICGSCAMNIAGENTLACICNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPW 152
Query: 177 L--KTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHA 234
           L  KT +   + ++Y QS  +++KLDGLYECILCACC+ SCPSYWWN ++YLGPA L+ A
Sbjct: 153 LQKKTKINLGEKQQY-QSIKEQEKLDGLYECILCACCSASCPSYWWNADKYLGPAVLMQA 211
Query: 235 YRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK 287
           YRWI DSRD+   ERL A  +D    ++C  I NCT TCPK L+PA AI ++K
Sbjct: 212 YRWIIDSRDDSAAERL-ARMQDGFSAFKCHTIMNCTKTCPKHLNPARAIGEIK 263

>pdb|1NEK|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With Ubiquinone Bound Length = 238

Iteration: 1
 Score =  242 bits (617), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/231 (51%), Positives = 159/231 (68%), Gaps = 6/231 (2%)
Query: 61  EFRIYRWNPDRPDSKPFLQSYHVDLSEC-GPMVLDALQKIKAETDSSLSYRRSCREGICG 119
           EF IYR+NPD  D  P +Q Y ++  E    M+LDAL ++K E D SLS+RRSCREG+CG
Sbjct: 4   EFSIYRYNPDV-DDAPRMQDYTLEADEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCG 61
Query: 120 SCAMNIGGTNTVACLKPIDG--DTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWL 177
           S  +N+ G N +AC+ PI       K  +I PLP + VI+DLVVD+  FY QY+ I+P+L
Sbjct: 62  SDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYL 121
Query: 178 KTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRW 237
             N      RE+ Q P  R+KLDGLYECILCACC+TSCPS+WWNP++++GPA LL AYR+
Sbjct: 122 LNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRF 181
Query: 238 ICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKT 288
           + DSRD  T+ RL  L+ D   ++RC +I NC + CPKGL+P  AI  +K+
Sbjct: 182 LIDSRDTETDSRLDGLS-DAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKS 231

>pdb|2WP9|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone Oxidoreductase (Sqr) Sdhb His207thr Mutant Length = 238

Iteration: 1
 Score =  241 bits (616), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/231 (51%), Positives = 159/231 (68%), Gaps = 6/231 (2%)
Query: 61  EFRIYRWNPDRPDSKPFLQSYHVDLSEC-GPMVLDALQKIKAETDSSLSYRRSCREGICG 119
           EF IYR+NPD  D  P +Q Y ++  E    M+LDAL ++K E D SLS+RRSCREG+CG
Sbjct: 4   EFSIYRYNPDV-DDAPRMQDYTLEADEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCG 61
Query: 120 SCAMNIGGTNTVACLKPIDG--DTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWL 177
           S  +N+ G N +AC+ PI       K  +I PLP + VI+DLVVD+  FY QY+ I+P+L
Sbjct: 62  SDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYL 121
Query: 178 KTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRW 237
             N      RE+ Q P  R+KLDGLYECILCACC+TSCPS+WWNP++++GPA LL AYR+
Sbjct: 122 LNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRF 181
Query: 238 ICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKT 288
           + DSRD  T+ RL  L+ D   ++RC +I NC + CPKGL+P  AI  +K+
Sbjct: 182 LIDSRDTETDSRLDGLS-DAFSVFRCTSIMNCVSVCPKGLNPTRAIGHIKS 231

>pdb|1KF6|B Chain B, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor Hqno Length = 243

Iteration: 1
 Score =  131 bits (330), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 121/233 (51%), Gaps = 7/233 (3%)
Query: 59  MKEFRI--YRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREG 116
           MK  +I   R+NP+  D+ P    Y V   +    +LDAL  IK      LSYR SCR  
Sbjct: 3   MKNLKIEVVRYNPEV-DTAPHSAFYEVPY-DATTSLLDALGYIKDNLAPDLSYRWSCRMA 60
Query: 117 ICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPW 176
           ICGSC M +     +AC K    D +    +  L +  + +DLVVD+T+F +  ++I+P+
Sbjct: 61  ICGSCGMMVNNVPKLAC-KTFLRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPY 119
Query: 177 LKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYR 236
           +  N    D     Q+PA   K      CI C  C  +CP +  NP E++GPAA+  A+R
Sbjct: 120 IIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNP-EFIGPAAITLAHR 178
Query: 237 WICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTK 289
           +  DSRD   +ER+  L   +  ++ C  +  C+  CPK +DPA AI + K +
Sbjct: 179 YNEDSRDHGKKERMAQLNS-QNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVE 230

>pdb|2BS2|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes Length = 241

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 111/240 (46%), Gaps = 5/240 (2%)
Query: 59  MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
           M   R+++++P    SKP  Q Y ++ +    + +  L  I+   D  L++   CR GIC
Sbjct: 4   MLTIRVFKYDPQSAVSKPHFQEYKIEEAPSMTIFI-VLNMIRETYDPDLNFDFVCRAGIC 62
Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQ-QYKSIEPWL 177
           GSC M I G  ++AC             + PLP   +IKDL VD  N++    + +E W+
Sbjct: 63  GSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWI 122
Query: 178 KTNMVPKDGR-EYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYR 236
                    + E R  P   +++  L  CI C CC  +C +     E+++G A L    R
Sbjct: 123 HAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMR-EDFVGAAGLNRVVR 181
Query: 237 WICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQPM 296
           ++ D  DE T+E    L  D+  ++ C  +  C   CPK L     I  ++ K M+S  M
Sbjct: 182 FMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRK-MVSVNM 240

>pdb|1QLB|B Chain B, Respiratory Complex Ii-Like Fumarate Reductase From Wolinella Succinogenes Length = 239

Iteration: 1
 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 107/233 (45%), Gaps = 4/233 (1%)
Query: 59  MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
           M   R+++++P    SKP  Q Y ++ +    + +  L  I+   D  L++   CR GIC
Sbjct: 4   MLTIRVFKYDPQSAVSKPHFQEYKIEEAPSMTIFI-VLNMIRETYDPDLNFDFVCRAGIC 62
Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQ-QYKSIEPWL 177
           GSC M I G  ++AC             + PLP   +IKDL VD  N++    + +E W+
Sbjct: 63  GSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWI 122
Query: 178 KTNMVPKDGR-EYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYR 236
                    + E R  P   +++  L  CI C CC  +C +     E+++G A L    R
Sbjct: 123 HAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMR-EDFVGAAGLNRVVR 181
Query: 237 WICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTK 289
           ++ D  DE T+E    L  D+  ++ C  +  C   CPK L     I  ++ K
Sbjct: 182 FMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRK 234

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
2bs2_B	241	Quinol-fumarate reductase iron-sulfur subunit B; 2	1e-139
2wdq_B	238	Succinate dehydrogenase iron-sulfur subunit; succi	1e-139
1kf6_B	243	Fumarate reductase iron-sulfur protein; respiratio	1e-138
3vr8_B	282	Iron-sulfur subunit of succinate dehydrogenase; me	1e-133
2h88_B	252	Succinate dehydrogenase IP subunit; complex II, me	1e-129
3kwl_A	514	Uncharacterized protein; putative oxidoreductase,	2e-57

>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B* Length = 241

 Score =  391 bits (1006), Expect = e-139
 Identities = 66/233 (28%), Positives = 103/233 (44%), Gaps = 4/233 (1%)

Query: 59  MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
           M   R+++++P    SKP  Q Y ++       +   L  I+   D  L++   CR GIC
Sbjct: 4   MLTIRVFKYDPQSAVSKPHFQEYKIEE-APSMTIFIVLNMIRETYDPDLNFDFVCRAGIC 62

Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFY-QQYKSIEPWL 177
           GSC M I G  ++AC             + PLP   +IKDL VD  N++    + +E W+
Sbjct: 63  GSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWI 122

Query: 178 KTNMVPKDG-REYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYR 236
                      E R  P   +++  L  CI C CC  +C +      +++G A L    R
Sbjct: 123 HAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMRE-DFVGAAGLNRVVR 181

Query: 237 WICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTK 289
           ++ D  DE T+E    L  D+  ++ C  +  C   CPK L     I  ++ K
Sbjct: 182 FMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRK 234

>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B* Length = 238

 Score =  390 bits (1005), Expect = e-139
 Identities = 121/237 (51%), Positives = 161/237 (67%), Gaps = 7/237 (2%)

Query: 59  MK-EFRIYRWNPDRPDSKPFLQSYHVDLSECGPM-VLDALQKIKAETDSSLSYRRSCREG 116
           M+ EF IYR+NPD  D  P +Q Y ++  E   M +LDAL ++K E D SLS+RRSCREG
Sbjct: 1   MRLEFSIYRYNPD-VDDAPRMQDYTLEADEGRDMMLLDALIQLK-EKDPSLSFRRSCREG 58

Query: 117 ICGSCAMNIGGTNTVACLKPID--GDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIE 174
           +CGS  +N+ G N +AC+ PI       K  +I PLP + VI+DLVVD+  FY QY+ I+
Sbjct: 59  VCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIK 118

Query: 175 PWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHA 234
           P+L  N      RE+ Q P  R+KLDGLYECILCACC+TSCPS+WWNP++++GPA LL A
Sbjct: 119 PYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAA 178

Query: 235 YRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHM 291
           YR++ DSRD  T+ RL  L  D   ++RC +I NC + CPKGL+P  AI  +K+  +
Sbjct: 179 YRFLIDSRDTETDSRLDGL-SDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLL 234

>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B* Length = 243

 Score =  388 bits (999), Expect = e-138
 Identities = 78/231 (33%), Positives = 118/231 (51%), Gaps = 5/231 (2%)

Query: 59  MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
             +  + R+NP+  D+ P    Y V       + LDAL  IK      LSYR SCR  IC
Sbjct: 5   NLKIEVVRYNPE-VDTAPHSAFYEVPYDATTSL-LDALGYIKDNLAPDLSYRWSCRMAIC 62

Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLK 178
           GSC M +     +AC   +  D +    +  L +  + +DLVVD+T+F +  ++I+P++ 
Sbjct: 63  GSCGMMVNNVPKLACKTFLR-DYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPYII 121

Query: 179 TNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWI 238
            N    D     Q+PA   K      CI C  C  +CP +  NP E++GPAA+  A+R+ 
Sbjct: 122 GNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNP-EFIGPAAITLAHRYN 180

Query: 239 CDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTK 289
            DSRD   +ER+  L   +  ++ C  +  C+  CPK +DPA AI + K +
Sbjct: 181 EDSRDHGKKERMAQL-NSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVE 230

>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B* Length = 282

 Score =  378 bits (972), Expect = e-133
 Identities = 142/261 (54%), Positives = 176/261 (67%), Gaps = 6/261 (2%)

Query: 34  HPAAQESAEVALESRV----TVQDNVKKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECG 89
               +    V   +R     T      K +K F IYR+NP+ P +KP LQ + VDL +CG
Sbjct: 6   TSVCRSLELVTQAARYASAATAAAPTGKRIKTFEIYRFNPEEPGAKPKLQKFDVDLDKCG 65

Query: 90  PMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPIDGDTSKPTIITP 149
            MVLDAL KIK E D +L++RRSCREGICGSCAMNI G NT+AC+  ID +TSK T I P
Sbjct: 66  TMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGENTLACICNIDQNTSKTTKIYP 125

Query: 150 LPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDG-REYRQSPADRKKLDGLYECILC 208
           LPHMFVIKDLV D+  FY QY SI+PWL+       G ++  QS  +++KLDGLYECILC
Sbjct: 126 LPHMFVIKDLVPDMNLFYAQYASIQPWLQKKTKINLGEKQQYQSIKEQEKLDGLYECILC 185

Query: 209 ACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKN 268
           ACC+ SCPSYWWN ++YLGPA L+ AYRWI DSRD+   ERL  + +D    ++C  I N
Sbjct: 186 ACCSASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAERLARM-QDGFSAFKCHTIMN 244

Query: 269 CTATCPKGLDPADAIHKMKTK 289
           CT TCPK L+PA AI ++K  
Sbjct: 245 CTKTCPKHLNPARAIGEIKML 265

>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ... Length = 252

 Score =  367 bits (945), Expect = e-129
 Identities = 152/235 (64%), Positives = 182/235 (77%), Gaps = 2/235 (0%)

Query: 56  KKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCRE 115
              +K+F IYRW+PD+P  KP +Q+Y VDL++CGPMVLDAL KIK E DS+L++RRSCRE
Sbjct: 8   TSRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCRE 67

Query: 116 GICGSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEP 175
           GICGSCAMNI G NT+AC K ID D SK T I PLPHM+V+KDLV DL+NFY QYKSIEP
Sbjct: 68  GICGSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEP 127

Query: 176 WLKT-NMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHA 234
           +LK  +   +   +Y QS  DR+KLDGLYECILCACC+TSCPSYWWN ++YLGPA L+ A
Sbjct: 128 YLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQA 187

Query: 235 YRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTK 289
           YRW+ DSRD+ TEERL  L +D   LYRC  I NCT TCPKGL+P  AI ++K  
Sbjct: 188 YRWMIDSRDDYTEERLAQL-QDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKM 241

>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori} Length = 514

 Score =  191 bits (487), Expect = 2e-57
 Identities = 35/256 (13%), Positives = 86/256 (33%), Gaps = 40/256 (15%)

Query: 36  AAQESAEVALESRVTVQDNVKKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDA 95
            +           V    ++  +    +++R+  ++ D  P  +SY ++  E    +LD 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMSVLKLHVKVFRFETNK-DYNPAYESYFLEYQE-DQYLLDL 58

Query: 96  LQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPID--GDTSKPTIITPLPHM 153
           L+++K      +SY  +         A+ I         K  D     SK  ++ PL   
Sbjct: 59  LKQLK-----GVSYSENI--------ALKINQIAVFEDAKVSDLVAFFSKEWVLDPLSKR 105

Query: 154 FVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTT 213
           + +KDL++D     + Y+     +              +  ++++L+             
Sbjct: 106 YALKDLMIDEKAVLKNYEDFFKQVPY-----------ITKGEKEELEKFI------QINF 148

Query: 214 SCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATC 273
             P       +YLG    L+    +        +  L+ +++ E  +    ++       
Sbjct: 149 INPQT---NPKYLGDGFFLYVKWLM-KRYPTERDRLLEMISQPESGVMNFLSV--AHYLY 202

Query: 274 PKGLDPADAIHKMKTK 289
               +    I++++  
Sbjct: 203 KNDDNIDHEIYELQEI 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
3vr8_B	282	Iron-sulfur subunit of succinate dehydrogenase; me	100.0
2h88_B	252	Succinate dehydrogenase IP subunit; complex II, me	100.0
2bs2_B	241	Quinol-fumarate reductase iron-sulfur subunit B; 2	100.0
2wdq_B	238	Succinate dehydrogenase iron-sulfur subunit; succi	100.0
1kf6_B	243	Fumarate reductase iron-sulfur protein; respiratio	100.0
3kwl_A	514	Uncharacterized protein; putative oxidoreductase,	100.0
1rm6_C	161	4-hydroxybenzoyl-COA reductase gamma subunit; xant	99.83
1t3q_A	168	Quinoline 2-oxidoreductase small subunit; QOR, mol	99.79
3i9v_3	783	NADH-quinone oxidoreductase subunit 3; electron tr	99.77
3c8y_A	574	Iron hydrogenase 1; dithiomethylether, H-cluster,	99.72
1ffv_A	163	CUTS, iron-sulfur protein of carbon monoxide dehyd	99.64
1n62_A	166	Carbon monoxide dehydrogenase small chain; CODH, m	99.62
3hrd_D	160	Nicotinate dehydrogenase small FES subunit; seleni	99.41
2w3s_A	462	Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2	99.11
1vlb_A	907	Aldehyde oxidoreductase; iron-sulphur cluster; HET	99.1
3nvw_A	164	Xanthine dehydrogenase/oxidase; hydroxylase, homod	99.08
1dgj_A	907	Aldehyde oxidoreductase; beta half-barrel, four-he	99.03
1jq4_A	98	Methane monooxygenase component C; [2Fe-2S] ferred	98.58
1frr_A	95	Ferredoxin I; electron transfer(iron-sulfur protei	98.54
1frd_A	98	Heterocyst [2Fe-2S] ferredoxin; electron transport	98.51
1iue_A	98	Ferredoxin; electron transport, iron-sulfur; 1.70A	98.49
1awd_A	94	Ferredoxin; electron transport, eukaryotic, green	98.44
1a70_A	97	Ferredoxin; iron-sulfur protein, photosynthesis, e	98.41
1wri_A	93	Ferredoxin II, ferredoxin; electron transport; 1.2	98.4
1czp_A	98	Ferredoxin I; [2Fe-2S] protein, crystal reduced wi	98.38
3cf4_A	807	Acetyl-COA decarboxylase/synthase alpha subunit; m	98.29
3unc_A	1332	Xanthine dehydrogenase/oxidase; oxidoreductase; HE	98.27
3ah7_A	113	[2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur	98.18
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	98.18
1l5p_A	93	Ferredoxin; [2Fe-2S] cluster, electron transfer, i	98.17
1i7h_A	111	Ferredoxin; 2Fe-2S,electron transport; 1.70A {Esch	98.14
3i9v_9	182	NADH-quinone oxidoreductase subunit 9; electron tr	98.08
2wlb_A	103	ETP1-FD, electron transfer protein 1, mitochondria	98.03
2y5c_A	109	Adrenodoxin-like protein, mitochondrial; electron	97.85
1doi_A	128	2Fe-2S ferredoxin; halophilic protein, redox prote	97.84
2bt6_A	108	Adrenodoxin 1; ruthenium(II) bipyridyl complex, in	97.8
2fdn_A	55	Ferredoxin; electron transport, iron-sulfur, 4Fe-4	97.66
1b9r_A	105	Protein (terpredoxin); structure from molmol, ferr	97.56
1rgv_A	80	Ferredoxin; electron transport; 2.90A {Thauera aro	97.55
2fgo_A	82	Ferredoxin; allochromatium vinosum, [4Fe-4S] clust	97.52
1jb0_C	80	Photosystem I iron-sulfur center; membrane protein	97.5
2zvs_A	85	Uncharacterized ferredoxin-like protein YFHL; elec	97.48
1xer_A	103	Ferredoxin; electron transport, iron-sulfur, dupli	97.48
1rof_A	60	Ferredoxin; electron transport, iron-sulfur; NMR {	97.46
3eun_A	82	Ferredoxin; electron transport, [4Fe-4S] cluster,	97.45
7fd1_A	106	FD1, protein (7-Fe ferredoxin I); electron transpo	97.39
1bc6_A	77	7-Fe ferredoxin; electron transport, iron-sulfur;	97.39
3lxf_A	104	Ferredoxin; iron, iron-sulfur, metal-binding, meta	97.39
1hfe_L	421	Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larg	97.36
3hui_A	126	Ferredoxin; cytochrome P450, electron transfer, ir	97.35
1dwl_A	59	Ferredoxin I; electron transfer, model, heteronucl	97.32
3zyv_A	1335	AOH1; oxidoreductase, molybdenum cofactor; HET: MT	97.32
1xlq_A	106	Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidored	97.28
1uwm_A	106	Ferredoxin VI, FDVI; electron transport, metal-bin	97.24
1h98_A	78	Ferredoxin; electron transport, thermophilic, iron	97.18
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	97.17
1f2g_A	58	Ferredoxin II; electron transport, FDII desulfovib	97.17
2v2k_A	105	Ferredoxin; iron, transport, iron-sulfur, mycobact	97.07
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	97.03
1dax_A	64	Ferredoxin I; electron transport, electron-transfe	96.85
3n9z_C	123	Adrenodoxin; cytochrome P450, 22-hydroxycholestero	96.81
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.76
3gyx_B	166	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.69
2c42_A	1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	96.68
1jnr_B	150	Adenylylsulfate reductase; oxidoreductase; HET: FA	96.64
1iqz_A	81	Ferredoxin; iron-sulfer protein, ultlahigh resolut	96.6
1sj1_A	66	Ferredoxin; thermostability, iron-sulfur cluster,	96.2
1ti6_B	274	Pyrogallol hydroxytransferase small subunit; molyb	96.11
2ivf_B	352	Ethylbenzene dehydrogenase beta-subunit; anaerobic	95.95
2ivf_B	352	Ethylbenzene dehydrogenase beta-subunit; anaerobic	95.87
2vpz_B	195	NRFC protein; oxidoreductase, molybdopterin guanin	95.84
1q16_B	512	Respiratory nitrate reductase 1 beta chain; membra	95.68
1kqf_B	294	FDH-N beta S, formate dehydrogenase, nitrate-induc	95.61
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.21
2vpz_B	195	NRFC protein; oxidoreductase, molybdopterin guanin	95.18
1h0h_B	214	Formate dehydrogenase (small subunit); tungsten se	95.07
1q16_B	512	Respiratory nitrate reductase 1 beta chain; membra	94.83
1kqf_B	294	FDH-N beta S, formate dehydrogenase, nitrate-induc	94.75
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	94.63
1ti6_B	274	Pyrogallol hydroxytransferase small subunit; molyb	94.62
1h0h_B	214	Formate dehydrogenase (small subunit); tungsten se	91.94
2fgo_A	82	Ferredoxin; allochromatium vinosum, [4Fe-4S] clust	90.09
2fdn_A	55	Ferredoxin; electron transport, iron-sulfur, 4Fe-4	89.96
1rgv_A	80	Ferredoxin; electron transport; 2.90A {Thauera aro	89.66
3eun_A	82	Ferredoxin; electron transport, [4Fe-4S] cluster,	89.61
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	89.5
2zvs_A	85	Uncharacterized ferredoxin-like protein YFHL; elec	89.39
1jb0_C	80	Photosystem I iron-sulfur center; membrane protein	88.72
1rof_A	60	Ferredoxin; electron transport, iron-sulfur; NMR {	87.63
1xer_A	103	Ferredoxin; electron transport, iron-sulfur, dupli	87.56
3mm5_A	418	Sulfite reductase, dissimilatory-type subunit ALP;	86.99
1f2g_A	58	Ferredoxin II; electron transport, FDII desulfovib	86.95
1dax_A	64	Ferredoxin I; electron transport, electron-transfe	86.77
3i9v_9	182	NADH-quinone oxidoreductase subunit 9; electron tr	86.18
1iqz_A	81	Ferredoxin; iron-sulfer protein, ultlahigh resolut	85.26
7fd1_A	106	FD1, protein (7-Fe ferredoxin I); electron transpo	83.41
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	83.35
3vr8_B	282	Iron-sulfur subunit of succinate dehydrogenase; me	82.45
2v2k_A	105	Ferredoxin; iron, transport, iron-sulfur, mycobact	82.33
1bc6_A	77	7-Fe ferredoxin; electron transport, iron-sulfur;	81.66
1dwl_A	59	Ferredoxin I; electron transfer, model, heteronucl	81.49

>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*

Probab=100.00  E-value=9.4e-62  Score=449.27  Aligned_cols=241  Identities=57%  Similarity=1.057  Sum_probs=217.3

Q ss_pred             ccceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccc
Q 045926           55 VKKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACL  134 (302)
Q Consensus        55 ~~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~  134 (302)
                      ..+++++|+||||||+.++++|||++|+|+++++|+||||||++|+.++||+|+|+.+|+.|+||+|+|+|||++++||.
T Consensus        31 ~~~~~~~~~I~R~~p~~~~~~p~~~~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~InG~~~laC~  110 (282)
T 3vr8_B           31 TGKRIKTFEIYRFNPEEPGAKPKLQKFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGENTLACI  110 (282)
T ss_pred             CCCeeEEEEEEEeCCCCCCCCCCcEEEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEECCEEecchh
Confidence            45678999999999997788999999999997658999999999997789999999999999999999999999999999


Q ss_pred             ccccCCCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCC-CCccccCChhHHhhccccccCcccCcccC
Q 045926          135 KPIDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPK-DGREYRQSPADRKKLDGLYECILCACCTT  213 (302)
Q Consensus       135 t~v~~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~-~~~e~~~s~~~~~~~~~~~~CI~CG~C~~  213 (302)
                      |++.+..++.++||||++||+|||||||+++||++|++++||+......+ ...+++|++++++.++++..||+||+|++
T Consensus       111 t~v~~~~~~~~tIepL~~~pVikDLvvD~~~f~~~~~~v~p~l~~~~~~~~~~~~~~qs~~~~~~~~~~~~CI~CG~C~~  190 (282)
T 3vr8_B          111 CNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPWLQKKTKINLGEKQQYQSIKEQEKLDGLYECILCACCSA  190 (282)
T ss_pred             hhHhHhcCCcEEeccCCCCceeeccccccHHHHHHHHHHhhhcCCCCCCCCCchhcccCHHHHHHHHhhhhCcccCcCcc
Confidence            99986556789999999999999999999999999999999998765432 24578899999999999999999999999


Q ss_pred             CCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhc
Q 045926          214 SCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLS  293 (302)
Q Consensus       214 aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~  293 (302)
                      +||++++++++|+||+++++++|++.++++....++++.+.+.. ++|.|++||+|+++||+||++.++|..+|+.+++.
T Consensus       191 aCP~~~~~~~~~lGP~~li~a~r~~~d~rd~~~~erl~~l~~~~-~l~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~  269 (282)
T 3vr8_B          191 SCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAERLARMQDGF-SAFKCHTIMNCTKTCPKHLNPARAIGEIKMLLTKM  269 (282)
T ss_pred             cCCceeccCCcCCCHHHHHHHHHHHhCCcccchHHHHHHHhhcC-CcccChhhCCccccCcCCCCHHHHHHHHHHHHHHh
Confidence            99999988788999999999999988988866667776654444 89999999999999999999999999999999876


Q ss_pred             CCc
Q 045926          294 QPM  296 (302)
Q Consensus       294 ~~~  296 (302)
                      +.+
T Consensus       270 ~~k  272 (282)
T 3vr8_B          270 KTK  272 (282)
T ss_pred             ccC
Confidence            544

>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...

Probab=100.00  E-value=4.9e-55  Score=399.11  Aligned_cols=239  Identities=64%  Similarity=1.159  Sum_probs=207.8

Q ss_pred             ceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccc
Q 045926           57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKP  136 (302)
Q Consensus        57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~  136 (302)
                      .++++|+||||||+.+..+|||++|+|+++++|+||||||++++.+++|+|+|+.+|+.|+||+|+|+|||++++||.|+
T Consensus         9 ~~~~~~~i~R~~~~~~~~~~~~~~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i~G~~~~aC~~~   88 (252)
T 2h88_B            9 SRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACTKK   88 (252)
T ss_dssp             CCEEEEEEEECCTTSTTSCCEEEEEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEETTEEEEGGGSB
T ss_pred             CceEEEEEEEeCCCCCCCCceEEEEEEecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEECCcEEccccCC
Confidence            46799999999999843489999999999765899999999998767999999999999999999999999999999999


Q ss_pred             ccCCCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCC-CccccCChhHHhhccccccCcccCcccCCC
Q 045926          137 IDGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKD-GREYRQSPADRKKLDGLYECILCACCTTSC  215 (302)
Q Consensus       137 v~~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~s~~~~~~~~~~~~CI~CG~C~~aC  215 (302)
                      +.++.++.++||||++||+++||+||+++|++++++++||+........ ..+.+++++++..+.+...||+||.|+.+|
T Consensus        89 ~~~~~g~~~~iepl~~~pvikDLvvD~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~Ci~CG~C~~~C  168 (252)
T 2h88_B           89 IDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSC  168 (252)
T ss_dssp             CCCCTTSCEEEECSTTCBEEETTEECCHHHHHHHHHTCCSCCCSCCTTTTSSCCCCCHHHHHTTTTTTTCCCCCTTGGGC
T ss_pred             HhHcCCCceEEecccCCCccccceeccHHHHHHhhhccCccccCCCCCCccccccCCHHHHHHhHhHHhchhhCcchhhC
Confidence            9987667899999999999999999999999999999999976543211 234778999999999999999999999999


Q ss_pred             CCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhcCC
Q 045926          216 PSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQP  295 (302)
Q Consensus       216 P~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~~~  295 (302)
                      |++.++++.|+||+.++++++++.++++....+++..+.+.. ++|.|++||+|+++||++|++.++|..||+.+++++.
T Consensus       169 P~~~~~~~~~lgP~~~~~~~r~~~~~r~~~~~~r~~~~~~~~-~~~~C~~Cg~C~~~CP~~i~~~~~i~~lr~~~~~~g~  247 (252)
T 2h88_B          169 PSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPF-SLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATYKE  247 (252)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHTCTTCCCHHHHHHTTCSTT-TTTTCCCCCHHHHHCTTCCCHHHHHHHHHHHHHHCC-
T ss_pred             CCCccCCCCcCCHHHHHHHHHHhhCCcccchHHHHHHHhccc-CCCcCccccchhhhcCCCCCHHHHHHHHHHHHHHcCC
Confidence            999876667999999999999888887754455554443223 7899999999999999999999999999999988765


Q ss_pred             c
Q 045926          296 M  296 (302)
Q Consensus       296 ~  296 (302)
                      .
T Consensus       248 ~  248 (252)
T 2h88_B          248 K  248 (252)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*

Probab=100.00  E-value=6.7e-53  Score=382.01  Aligned_cols=234  Identities=26%  Similarity=0.558  Sum_probs=203.2

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI  137 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v  137 (302)
                      .+++|+||||||+.+.++|||++|+|++++ |+||||||++++.+++|+|+|+.+|+.|+||+|+|+|||++++||+|++
T Consensus         3 ~~~~~~i~R~~~~~~~~~~~~~~~~v~~~~-~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i~G~~~~aC~~~~   81 (241)
T 2bs2_B            3 RMLTIRVFKYDPQSAVSKPHFQEYKIEEAP-SMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTLT   81 (241)
T ss_dssp             CEEEEEEEECCTTCTTCCCEEEEEEEECCT-TCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEETTEEEEGGGCBG
T ss_pred             ceEEEEEEEeCCCCCCCCceEEEEEEeCCC-CChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEECCCeecchhCcH
Confidence            468999999999984379999999999988 9999999999987789999999999999999999999999999999999


Q ss_pred             cCCCCCceEEccCCCchhhhhhhhccchhhhhc-cccccccccCCCCCCCcccc-CChhHHhhccccccCcccCcccCCC
Q 045926          138 DGDTSKPTIITPLPHMFVIKDLVVDLTNFYQQY-KSIEPWLKTNMVPKDGREYR-QSPADRKKLDGLYECILCACCTTSC  215 (302)
Q Consensus       138 ~~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~-~~~~~~l~~~~~~~~~~e~~-~s~~~~~~~~~~~~CI~CG~C~~aC  215 (302)
                      .++.|++++||||++||+++||+||+++|++++ +.+++|+..........+.. +++++...+.+...||+||+|+.+|
T Consensus        82 ~~~~g~~~~ie~l~~~pvikDLvvD~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~C  161 (241)
T 2bs2_B           82 KDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAAC  161 (241)
T ss_dssp             GGCTTSEEEEECCTTSEEEETTEEECHHHHHHHHHHTTCSCCCSSCCCTTSCCCCCCHHHHHHHHHHHTCCCCCHHHHTC
T ss_pred             hHcCCCeEEEecCCCCCcceeceeeCHHHHHHHHHHhcCeeccCCCCCCccccccCCHHHHHHhhhhhhhhccCcCcccC
Confidence            987566799999999999999999999999999 99999997654332223343 8888888888999999999999999


Q ss_pred             CCcccCCCCcccHHHHHHHHHHhccC-cchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhcC
Q 045926          216 PSYWWNPEEYLGPAALLHAYRWICDS-RDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQ  294 (302)
Q Consensus       216 P~~~~~~~~~lgP~~l~~a~r~~~d~-rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~~  294 (302)
                      |++.++. .|+||+++++++++..++ ++....+++..+.+.. ++|.|+.||+|+++||++|++.++|..+|+.++++|
T Consensus       162 P~~~~~~-~~~~p~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~C~~Cg~C~~vCP~~i~~~~~i~~lr~~~~~~g  239 (241)
T 2bs2_B          162 GTKIMRE-DFVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDD-GVFGCMTLLACHDVCPKNLPLQSKIAYLRRKMVSVN  239 (241)
T ss_dssp             HHHHHCT-TCCHHHHHHHHHHHHTCTTCCCCHHHHHHHHCSTT-TGGGCCCCCHHHHHCTTCCCHHHHHHHHHHHHTTCC
T ss_pred             CCCccCC-CCCCHHHHHHHHHHhhCccccccHHHHHHHHhccc-CcccCcccChhhHhcCCCCChHHHHHHHHHHHHHhc
Confidence            9998643 689999999999987776 5544445555443233 789999999999999999999999999999998766

>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*

Probab=100.00  E-value=1.7e-50  Score=365.37  Aligned_cols=233  Identities=51%  Similarity=0.993  Sum_probs=199.6

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCC-chhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSEC-GPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI  137 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~-g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v  137 (302)
                      .++|+||||||++ +++|||++|+|+++++ |+||||||++++.+ ||+|+|+.+|+.|+||+|+|+|||+++|||.|++
T Consensus         2 ~~~~~i~R~~~~~-~~~~~~~~~~v~~~~~~~~tll~~l~~~~~~-~~~l~~~~~C~~g~Cg~C~v~v~G~~~laC~~~~   79 (238)
T 2wdq_B            2 RLEFSIYRYNPDV-DDAPRMQDYTLEADEGRDMMLLDALIQLKEK-DPSLSFRRSCREGVCGSDGLNMNGKNGLACITPI   79 (238)
T ss_dssp             EEEEEEEECCTTT-CSSCEEEEEEEECCTTCCCBHHHHHHHHHHH-CTTCCCCCSSSSSSSCTTEEEETTEEEEGGGCBG
T ss_pred             eEEEEEEEcCCCC-CCCCceEEEEeecCCCCCChHHHHHHHhccc-CCCccccccCCCCCCCCCEEEECCEEEcccccch
Confidence            3899999999998 6799999999999753 79999999999865 9999999999999999999999999999999999


Q ss_pred             cC--CCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCC
Q 045926          138 DG--DTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSC  215 (302)
Q Consensus       138 ~~--~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aC  215 (302)
                      .+  ..+..++||||.+||+|+||++|++.++++++++.+|+.....+....++.++++++..+++..+||+||+|+.+|
T Consensus        80 ~~~g~~~~~~~ie~l~~~pvi~dlv~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~C  159 (238)
T 2wdq_B           80 SALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSC  159 (238)
T ss_dssp             GGTCCTTSCEEEECCTTSBEEETTEECCHHHHHHHHHTCCSCCCCCSSCCSSSCCCCHHHHHTTTTTTTCCCCCTTGGGC
T ss_pred             hhhccCCCCEEEeeCCCCcchhhceechHHHHHHHHhhcCccccCcCCCCcccccCCHHHHHHHhccccccccCCchhhC
Confidence            98  4344599999999999999999999999999999999976543311245678888889999999999999999999


Q ss_pred             CCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhcC
Q 045926          216 PSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQ  294 (302)
Q Consensus       216 P~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~~  294 (302)
                      |.+..+.+.|+||++++.+++++.++++....+++..+.+.. ..|.|++||+|+++||+||++.++|..+|+.+++++
T Consensus       160 P~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~~~~~~~  237 (238)
T 2wdq_B          160 PSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAF-SVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRN  237 (238)
T ss_dssp             HHHHHCTTTSCCHHHHHHHHHHHTCTTCCCHHHHHHTTCSTT-TTTTCCCCCHHHHHCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             cCCccCCCCCCCHHHHHHHHHHHhCCcccchHHHHHHHhccC-CCCcCcccchhhhhcCCCCCHHHHHHHHHHHHHhhc
Confidence            998866556899999999998876776654344554333223 689999999999999999999999999999887653

>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*

Probab=100.00  E-value=7.9e-49  Score=355.54  Aligned_cols=231  Identities=33%  Similarity=0.598  Sum_probs=197.4

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccccc
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPID  138 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v~  138 (302)
                      +++|+||||||+. +++|||+.|+|++++ |+||||||+++|.++||+|+|+.+|+.|+||+|+|+|||++++||.|++.
T Consensus         5 ~~~~~i~R~~~~~-~~~~~~~~~~~~~~~-~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v~G~~~~aC~~~~~   82 (243)
T 1kf6_B            5 NLKIEVVRYNPEV-DTAPHSAFYEVPYDA-TTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLR   82 (243)
T ss_dssp             EEEEEEEECCTTT-CSSCEEEEEEEEECT-TCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEETTEEEEGGGCBGG
T ss_pred             eEEEEEEEcCCCC-CCCCeeEEEEEecCC-CChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEECCEEEeeeeeEHh
Confidence            5999999999998 679999999999988 99999999999876799999999999999999999999999999999999


Q ss_pred             CCCCCceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCcc-ccCChhHHhhccccccCcccCcccCCCCC
Q 045926          139 GDTSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGRE-YRQSPADRKKLDGLYECILCACCTTSCPS  217 (302)
Q Consensus       139 ~~~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e-~~~s~~~~~~~~~~~~CI~CG~C~~aCP~  217 (302)
                      ++. +.++|+||++|+++|||++|++.|+.++..+++|+......+ ..+ +.+++++...+.+..+||+||+|+.+||.
T Consensus        83 ~~~-~~~~i~~l~~~~~~kdl~~dl~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~  160 (243)
T 1kf6_B           83 DYT-DGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTA-DQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQ  160 (243)
T ss_dssp             GCT-TCEEEECCTTSCEEETTEECCHHHHHHHHHTCCSCCSCCCCG-GGCCCCCCHHHHHTTGGGGCCCCCCHHHHHCHH
T ss_pred             hCC-CcEEEEecCCCCccceeEEecHHHHHHHHhcCCeeccCcCCC-ccccccCCHHHHHHhhhhhhccccCccccccCC
Confidence            853 359999999999999999999999999999999986543222 123 56777888888999999999999999999


Q ss_pred             cccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhcCC
Q 045926          218 YWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQP  295 (302)
Q Consensus       218 ~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~~~  295 (302)
                      +..+.. |+||++++.++++..++++....+++..+.+.. +.|.|++||+|+.+||+||++.++|..+|+.+.+.+.
T Consensus       161 ~~~~~~-~~gP~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~C~~Cg~C~~vCP~gi~~~~~i~~~r~~~~~~g~  236 (243)
T 1kf6_B          161 FGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQLNSQN-GVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFL  236 (243)
T ss_dssp             HHHCTT-SCCHHHHHHHHHHHTCTTCCCTHHHHHHHHSTT-TGGGCCCCCHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             CcccCC-CCCHHHHHHHHHHhhCccccchHHHHHHHhccC-CcccCcccCCcchhCCCCCCHHHHHHHHHHHHHHccC
Confidence            876443 899999999998876665533233443333223 6899999999999999999999999999998877653

>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}

Probab=100.00  E-value=1.8e-41  Score=337.63  Aligned_cols=199  Identities=19%  Similarity=0.341  Sum_probs=173.8

Q ss_pred             cccceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccc
Q 045926           54 NVKKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVAC  133 (302)
Q Consensus        54 ~~~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC  133 (302)
                      +|++.+++|+||||||+. +++|||++|+|++++ ++||||||.+|+     +|+||.        ||+|+|||+++|| 
T Consensus        19 ~~~~~~~~~~i~R~~p~~-~~~p~~~~y~v~~~~-~~~vLd~L~~ik-----~l~fr~--------sCam~ING~~~la-   82 (514)
T 3kwl_A           19 HMSVLKLHVKVFRFETNK-DYNPAYESYFLEYQE-DQYLLDLLKQLK-----GVSYSE--------NIALKINQIAVFE-   82 (514)
T ss_dssp             CCCCCEEEEEEEECBTTS-CSCCEEEEEEEECCT-TCBHHHHHTTST-----TCCCCS--------SCCEEETTEEECS-
T ss_pred             cccceEEEEEEEEeCCCC-CCCCceEEEEEeCCC-CCcHHHHHHHhh-----hCeeec--------cceEEECCEehhh-
Confidence            356678999999999998 779999999999988 899999999997     889886        7999999999999 


Q ss_pred             cccccCC---CCCceEEccCCCchhhhhhhhccchhhhhcccc---ccccccCCCCCCCccccCChhHHhhccccccCcc
Q 045926          134 LKPIDGD---TSKPTIITPLPHMFVIKDLVVDLTNFYQQYKSI---EPWLKTNMVPKDGREYRQSPADRKKLDGLYECIL  207 (302)
Q Consensus       134 ~t~v~~~---~~~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~---~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~  207 (302)
                      .|.+.+.   .+++++||||++||+|||||||+++||++|+++   +||+.              +++++.++.+   | 
T Consensus        83 ~t~~~~~~~~~~~~i~iePl~~~pvikDLvvD~~~f~~~~~~i~~~~p~~~--------------~~~~~~~~~~---~-  144 (514)
T 3kwl_A           83 DAKVSDLVAFFSKEWVLDPLSKRYALKDLMIDEKAVLKNYEDFFKQVPYIT--------------KGEKEELEKF---I-  144 (514)
T ss_dssp             CCBHHHHHHHHCSEEEEECSCSTTEEETTEECHHHHHGGGHHHHHTCTTSC--------------HHHHHGGGGT---G-
T ss_pred             hhhHHHHhhccCCcEEEEECCCCcccccceeccHHHHHHHHHhhcCCCCCC--------------HHHHHHHhhc---C-
Confidence            6777542   256899999999999999999999999999999   99983              3566666666   3 


Q ss_pred             cCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHH
Q 045926          208 CACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMK  287 (302)
Q Consensus       208 CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR  287 (302)
                        .|+++||++  + ++|+||+++++++|++.|+||... +|++.+.+..+++|.|++|  |+++||++|++.+.|..||
T Consensus       145 --~C~~aCp~~--~-~~f~Gpa~l~~a~r~~~d~rd~~~-~rl~~l~~~~~gv~~C~~~--C~~~CPk~i~~~~~I~~lr  216 (514)
T 3kwl_A          145 --QINFINPQT--N-PKYLGDGFFLYVKWLMKRYPTERD-RLLEMISQPESGVMNFLSV--AHYLYKNDDNIDHEIYELQ  216 (514)
T ss_dssp             --GGGGTCCCC--C-TTCCCHHHHHHHHHHHHHCGGGHH-HHHHHTCCTTTSGGGCCCC--GGGBTTCCCHHHHHHHHHH
T ss_pred             --hhhccCCCC--C-cccCcHHHHHHHHHHhcCCcchHH-HHHHHhhcCcccccccccc--ccccCCCCCCHHHHHHHHH
Confidence              999999994  3 679999999999999999999876 8888773222389999999  9999999999999999999


Q ss_pred             HHHhhcC
Q 045926          288 TKHMLSQ  294 (302)
Q Consensus       288 ~~l~~~~  294 (302)
                      +.+...+
T Consensus       217 ~~~~~~~  223 (514)
T 3kwl_A          217 EILTNSK  223 (514)
T ss_dssp             HHHHTSS
T ss_pred             HHHHHhC
Confidence            9888765

>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*

Probab=99.83  E-value=9.4e-21  Score=161.69  Aligned_cols=144  Identities=14%  Similarity=0.267  Sum_probs=109.2

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI  137 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v  137 (302)
                      .+++|+|+.            ++|++++++ ++||||+|+++.    +.+.++.+|++|+||+|+|.|||++++||.|++
T Consensus         3 ~~i~~~vNG------------~~~~v~~~~-~~tLL~~Lr~~~----gl~g~k~gC~~G~CGaCtV~vdG~~v~sC~~~~   65 (161)
T 1rm6_C            3 NILRLTLNG------------RAREDLVPD-NMLLLDYLRETV----GLTGTKQGCDGGECGACTVLVDDRPRLACSTLA   65 (161)
T ss_dssp             EEEEEEETT------------EEEEEEEET-TCBHHHHHHHTT----CCTTSCCCSSSSSSCTTEEEETTEEEEGGGSBG
T ss_pred             ceEEEEECC------------EEEEEecCC-cCcHHHHHHHcC----CCcccccCCCCCCCCCCEEEECCcEEechHHHH
Confidence            468899988            779998888 899999999863    346789999999999999999999999999999


Q ss_pred             cCCCC-CceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCC
Q 045926          138 DGDTS-KPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCP  216 (302)
Q Consensus       138 ~~~~~-~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP  216 (302)
                      .+..+ +.+|||||.+++++                                   ++.+...+.  ..+++||.|++.  
T Consensus        66 ~~~~G~~v~TiEgL~~~~~~-----------------------------------~p~q~a~~~--~~~~qCG~Ctpg--  106 (161)
T 1rm6_C           66 HQVAGKKVETVESLATQGTL-----------------------------------SKLQAAFHE--KLGTQCGFCTPG--  106 (161)
T ss_dssp             GGGTTSEEECGGGSSBTTBC-----------------------------------CHHHHHHHH--HTCCSSCSSHHH--
T ss_pred             HHhCCceEEEECCCCCCCcc-----------------------------------CHHHHHHHH--hCCCcCCCCchH--
Confidence            88544 46789999865431                                   111222222  246999999872  


Q ss_pred             CcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccC
Q 045926          217 SYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATC  273 (302)
Q Consensus       217 ~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vC  273 (302)
                                   .++.+++++.++++ .+++++....+ . ++++|+.+..|.++|
T Consensus       107 -------------~im~a~~ll~~~~~-pt~~~i~~~l~-g-nlcRCtgy~~i~~A~  147 (161)
T 1rm6_C          107 -------------MIMASEALLRKNPS-PSRDEIKAALA-G-NLCRCTGYVKIIKSV  147 (161)
T ss_dssp             -------------HHHHHHHHHHHCSS-CCHHHHHHHTT-T-CCCSSSCSHHHHHHH
T ss_pred             -------------HHHHHHHHHhcCCC-CCHHHHHHHHc-C-CeECCCCCHHHHHHH
Confidence                         56788888877665 34556655443 3 799999999998765

>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2

Probab=99.79  E-value=4.3e-19  Score=152.44  Aligned_cols=143  Identities=16%  Similarity=0.293  Sum_probs=104.6

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHc-ccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKI-KAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI  137 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i-~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v  137 (302)
                      +++|+|++            +.|++++++ |+||||||++. +..     .++.+|+.|+||+|+|+|||++++||.|++
T Consensus        11 ~i~~~ing------------~~~~~~v~~-~~tlL~~Lr~~~gl~-----g~~~~C~~G~CGaC~V~vdG~~v~sC~~~~   72 (168)
T 1t3q_A           11 RISATING------------KPRVFYVEP-RMHLADALREVVGLT-----GTKIGCEQGVCGSCTILIDGAPMRSCLTLA   72 (168)
T ss_dssp             EEEEEETT------------EEEEEEECT-TSBHHHHHHHTTCCT-----TSCCSCSSSSSCTTEEEETTEEEEGGGSBG
T ss_pred             eEEEEECC------------EEEEEecCC-CCcHHHHHHhcCCCC-----ccccCCCCCCCCCcEEEECCCEeechhhHH
Confidence            58888887            668888888 99999999985 421     477899999999999999999999999999


Q ss_pred             cCCCC-CceEEccCCCchhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCC
Q 045926          138 DGDTS-KPTIITPLPHMFVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCP  216 (302)
Q Consensus       138 ~~~~~-~~~~Iepl~~~~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP  216 (302)
                      .+..+ +.+|||||.+++.+                                   .+.+...+  ...+++||.|.    
T Consensus        73 ~~~~G~~v~Tiegl~~~~~~-----------------------------------~~~q~a~~--~~~~~qCG~C~----  111 (168)
T 1t3q_A           73 VQAEGCSIETVEGLSQGEKL-----------------------------------NALQDSFR--RHHALQCGFCT----  111 (168)
T ss_dssp             GGGTTCEEECGGGTCCSSSC-----------------------------------CHHHHHHH--HTTCCSSCSSH----
T ss_pred             HHhCCCeEEEEcCCCCcccc-----------------------------------CHHHHHHH--HhCCCcCCCch----
Confidence            98544 45789999764310                                   11111211  23468999998    


Q ss_pred             CcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCC
Q 045926          217 SYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCP  274 (302)
Q Consensus       217 ~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP  274 (302)
                                 |..++.+++++.++++. +.+++....+ . ++++|+.|++|+++|-
T Consensus       112 -----------pg~i~~a~~ll~~~~~p-~~~~i~~~l~-g-nlcRCt~y~~~v~A~~  155 (168)
T 1t3q_A          112 -----------AGMLATARSILAENPAP-SRDEVREVMS-G-NLCRCTGYETIIDAIT  155 (168)
T ss_dssp             -----------HHHHHHHHHHHHHCSSC-CHHHHHHHGG-G-SCCSSSCSHHHHHHHT
T ss_pred             -----------HHHHHHHHHHHhcCCCC-CHHHHHHHHc-C-CcccCCCchHHHHHHH
Confidence                       55678888887555542 2334433332 3 7899999999999984

>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*

Probab=99.77  E-value=2.5e-20  Score=193.81  Aligned_cols=181  Identities=14%  Similarity=0.148  Sum_probs=106.9

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccC-CCCCccCccEEEECC----------
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRS-CREGICGSCAMNIGG----------  127 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~-C~~g~CG~C~V~VnG----------  127 (302)
                      |++|.|++            +  +|++++ |+|||+|++++| +++|+|||+.. ++.|.||+|.|+|+|          
T Consensus         1 mv~i~idg------------~--~~~v~~-g~til~a~~~~g-i~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~   64 (783)
T 3i9v_3            1 MVRVKVND------------R--IVEVPP-GTSVMDAVFHAG-YDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPL   64 (783)
T ss_dssp             CEEEECSS------------C--EEEECT-TCBHHHHHHHTT-CCCCCSSCCTTSCCCCCSCCSEEEEECC---------
T ss_pred             CeEEEECC------------E--EEEeCC-CChHHHHHHHhC-CCccccCCCCCCCCCcccCCcEEEecccccccccccc
Confidence            57888876            3  355556 999999999998 56999999987 568999999999963          


Q ss_pred             -------------EEeccccccccCCCCCceEEccCC-----Cchhhhhhhhccchhhh---------hcccccccccc-
Q 045926          128 -------------TNTVACLKPIDGDTSKPTIITPLP-----HMFVIKDLVVDLTNFYQ---------QYKSIEPWLKT-  179 (302)
Q Consensus       128 -------------~~~laC~t~v~~~~~~~~~Iepl~-----~~~vikDLvvD~~~~~~---------~~~~~~~~l~~-  179 (302)
                                   ++++||.|+|.+    .+.|+.-+     ....+-+|++..|+..+         .++++...+.. 
T Consensus        65 ~~~~G~~~~~~~~~~~~aC~t~v~~----gm~v~t~~~~~~~~r~~~le~ll~nhp~dC~~C~~~g~C~Lq~~~~~~g~~  140 (783)
T 3i9v_3           65 LNEKGEPEIQWQPKLAASCVTAVAD----GMVVDTLSDVVREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLY  140 (783)
T ss_dssp             --------CCBCSSCEETTTCBCCS----SEEEESSSHHHHHHHHHHHHHHHTSCCCCTTTCTTGGGCHHHHHHHHHCSC
T ss_pred             cccccccccccCCCcccccCCCCCC----CCEEEECCHHHHHHHHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHHhCCc
Confidence                         467899999987    35554322     01123334444444322         23322111111 


Q ss_pred             -------------CCCCCCCcc-ccCC-hhHHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcch
Q 045926          180 -------------NMVPKDGRE-YRQS-PADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDE  244 (302)
Q Consensus       180 -------------~~~~~~~~e-~~~s-~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~  244 (302)
                                   ..+++..+. .+.+ ........+.++||+||+|+.+||..+...  .++           ...+..
T Consensus       141 ~~~~~~~~~~~p~~~r~~~~k~~~~~~~~~~p~i~~d~~~CI~C~~Cv~~C~~~~~~~--~i~-----------~~~~g~  207 (783)
T 3i9v_3          141 EKYYQKGPLELPVYTRFEFTRRHVDKHHPLSPFVILDRERCIHCKRCVRYFEEVPGDE--VLD-----------FIERGV  207 (783)
T ss_dssp             CCC------CCCCCCCCCSCCCCCCCSEEEETTEEECTTTCCCCCHHHHHHHHTTCCC--CCE-----------ECSCTT
T ss_pred             cccccccccccccccccccccccCCcccCCCccEEEchhhCCCccHHHHHhhhhcCCc--eee-----------eecCCC
Confidence                         111211111 1111 112345668899999999999997654211  111           011110


Q ss_pred             hHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          245 LTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       245 ~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      .  .   .+.... ....|++||+|+++||+|+-
T Consensus       208 ~--~---~i~~~~-~~~~C~~CG~Cv~vCP~gAl  235 (783)
T 3i9v_3          208 H--T---FIGTMD-FGLPSGFSGNITDICPVGAL  235 (783)
T ss_dssp             S--C---CEECSS-TTCCSTTTTTHHHHCSSSSE
T ss_pred             c--c---EEccCC-CCCCCccchhHHhhcccCce
Confidence            0  0   011011 23489999999999999985

>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*

Probab=99.72  E-value=3.9e-19  Score=179.05  Aligned_cols=187  Identities=15%  Similarity=0.219  Sum_probs=107.8

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCC-C-CCccCccEEEECCE-Eeccccc
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSC-R-EGICGSCAMNIGGT-NTVACLK  135 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C-~-~g~CG~C~V~VnG~-~~laC~t  135 (302)
                      |++|+|+.              +.|++++ |+|||+||+++| ..+|+||++.+| + .|.||+|.|+|||. +++||.|
T Consensus         1 mv~~~ing--------------~~v~v~~-g~tiL~a~~~~g-i~ip~lC~~~~~~~~~G~Cg~C~V~v~g~~~~~aC~t   64 (574)
T 3c8y_A            1 MKTIIING--------------VQFNTDE-DTTILKFARDNN-IDISALCFLNNCNNDINKCEICTVEVEGTGLVTACDT   64 (574)
T ss_dssp             CEEEEETT--------------EEEEECC-CCBHHHHHHHTT-CCCCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGC
T ss_pred             CeEEEECC--------------EEEEeCC-CCHHHHHHHHcC-CCCCcccCCCCCCCCcccCCCCEEEeCCCcccccCCC
Confidence            47788877              4566667 999999999998 469999999987 6 89999999999998 8999999


Q ss_pred             cccCCCCCceEEccCC--Cchhhhhhhhccchhhh---------hcccccccccc-C-CCC-CCCccccCChhHHhhccc
Q 045926          136 PIDGDTSKPTIITPLP--HMFVIKDLVVDLTNFYQ---------QYKSIEPWLKT-N-MVP-KDGREYRQSPADRKKLDG  201 (302)
Q Consensus       136 ~v~~~~~~~~~Iepl~--~~~vikDLvvD~~~~~~---------~~~~~~~~l~~-~-~~~-~~~~e~~~s~~~~~~~~~  201 (302)
                      ++.++ ....|.++.-  ....+.+|+++.+++.+         .++.+.-.+.. . ..+ +..+.............+
T Consensus        65 ~v~~g-m~V~T~~~~~~~~r~~~lelll~~h~~~C~~C~~~~~C~Lq~~a~~~Gv~~~~~f~~~~~~~~~~~~~~~i~~d  143 (574)
T 3c8y_A           65 LIEDG-MIINTNSDAVNEKIKSRISQLLDIHEFKCGPCNRRENCEFLKLVIKYKARASKPFLPKDKTEYVDERSKSLTVD  143 (574)
T ss_dssp             BCCTT-CEEESSCHHHHHHHHHHHHHHHTTSCCCCTTCTTTTSCHHHHHHHHHTCCCSSCCCCSCGGGGEECCSSSEEEE
T ss_pred             Ccccc-eeEEecchhhhhhHHHHHHHHHhccCCCCCcCCCCcchHHHHHHHHhccCCCcCCCCCccccccccCCCcceeC
Confidence            99862 1111222211  01234444554444432         22222111111 1 111 100000011112345667


Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHH-HhhhcccccccCcccccccccCCCCCC
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQ-ALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~-~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      .++||.||+|+.+||..+...           ++.+..++...    ++. ...... ....|+.||.|+.+||+++-
T Consensus       144 ~~kCi~Cg~Cv~~CP~~~~~~-----------ai~~~~~g~~~----~i~~~~~~~i-~~~~Ci~Cg~Cv~~CP~gAi  205 (574)
T 3c8y_A          144 RTKCLLCGRCVNACGKNTETY-----------AMKFLNKNGKT----IIGAEDEKCF-DDTNCLLCGQCIIACPVAAL  205 (574)
T ss_dssp             GGGCCCCCHHHHHHHHHHSCC-----------CSEEEEETTEE----EEESGGGCCG-GGSSCCCCCHHHHHCSSTTE
T ss_pred             cccCcCCCCccchhCchhcCC-----------ceeeccCCccc----eeccccccee-chhhCCcchhHHHhhccCCc
Confidence            889999999999999632100           00000001000    000 000011 34689999999999999864

>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*

Probab=99.64  E-value=9.9e-16  Score=130.67  Aligned_cols=79  Identities=13%  Similarity=0.279  Sum_probs=66.4

Q ss_pred             ceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccc
Q 045926           57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKP  136 (302)
Q Consensus        57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~  136 (302)
                      ..+++|+|+.            ++|++++++ ++||||+|++..    +...++.+|+.|.||+|+|.|||++++||.++
T Consensus         3 ~~~i~~~vNG------------~~~~~~v~~-~~tLLd~LR~~l----gltg~k~gC~~G~CGaCtV~vdG~~v~sC~~~   65 (163)
T 1ffv_A            3 KKIITVNVNG------------KAQEKAVEP-RTLLIHFLREEL----NLTGAHIGCETSHCGACTVDIDGRSVKSCTHL   65 (163)
T ss_dssp             CEEEEEEETT------------EEEEEEECT-TCBHHHHHHHTS----CCTTSCCCCSSSCSCTTEEEETTEEEEGGGSB
T ss_pred             CceEEEEECC------------EEEEEecCC-CCcHHHHHHhcC----CCcccccCCCCCCCCCCEEEECCcEecchHhh
Confidence            3468888887            678899888 899999999841    34578899999999999999999999999999


Q ss_pred             ccCCCC-CceEEccCCC
Q 045926          137 IDGDTS-KPTIITPLPH  152 (302)
Q Consensus       137 v~~~~~-~~~~Iepl~~  152 (302)
                      +....+ +.+|||+|.+
T Consensus        66 ~~~~~G~~I~TiEgL~~   82 (163)
T 1ffv_A           66 AVQCDGSEVLTVEGLAN   82 (163)
T ss_dssp             GGGGTTCEEECGGGTSB
T ss_pred             HHHhCCceEEEECCCCC
Confidence            997545 3678999874

>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*

Probab=99.62  E-value=2.1e-15  Score=129.01  Aligned_cols=78  Identities=13%  Similarity=0.278  Sum_probs=65.7

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI  137 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v  137 (302)
                      .+++|+|+.            +.|++++++ ++||||+|++..    +...++.+|+.|.||+|+|.|||++++||.+++
T Consensus         4 ~~i~~~vNG------------~~~~~~v~~-~~tLLd~LR~~l----gl~g~k~gC~~G~CGaCtV~vdG~~v~SC~~~~   66 (166)
T 1n62_A            4 AHIELTING------------HPVEALVEP-RTLLIHFIREQQ----NLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFA   66 (166)
T ss_dssp             EEEEEEETT------------EEEEEEECT-TCBHHHHHHHTS----CCTTSCCCCSSSCSCTTEEEETTEEEEGGGSBG
T ss_pred             ceEEEEECC------------EEEEEecCC-CCcHHHHHHHcC----CCCccccCCCCCCCCCCEEEECCcEEechhhhH
Confidence            468888887            678899888 899999999842    345788899999999999999999999999999


Q ss_pred             cCCCC-CceEEccCCC
Q 045926          138 DGDTS-KPTIITPLPH  152 (302)
Q Consensus       138 ~~~~~-~~~~Iepl~~  152 (302)
                      ....+ +.+|||+|.+
T Consensus        67 ~~~~G~~V~TiEgL~~   82 (166)
T 1n62_A           67 VQANGASITTIEGMAA   82 (166)
T ss_dssp             GGGTTCEEECGGGSSC
T ss_pred             HHhCCceEEEeCCCCC
Confidence            86545 4678999864

>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}

Probab=99.41  E-value=2.9e-13  Score=114.97  Aligned_cols=78  Identities=15%  Similarity=0.308  Sum_probs=65.6

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI  137 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v  137 (302)
                      .+++|+|++            +.|++++++ ++||||+|++.    .....++.+|+.|.||+|+|.|||++++||.+++
T Consensus         4 ~~i~~~vNG------------~~~~v~v~p-~~tLLd~LR~~----lgltgtk~gC~~G~CGACtV~vdG~~v~sC~~~~   66 (160)
T 3hrd_D            4 ITINLNLNG------------EARSIVTEP-NKRLLDLLRED----FGLTSVKEGCSEGECGACTVIFNGDPVTTCCMLA   66 (160)
T ss_dssp             EEEEEEETT------------EEEEEEECS-SSBHHHHHHTT----SCCTTSCCSSSSSSSCTTEEEETTEEEEGGGSBG
T ss_pred             ceEEEEECC------------EEEEEecCC-CCCHHHHHHHh----cCCCccccccCCCCCCCCEEEECCEEEEchhhhh
Confidence            468899988            678899888 89999999963    1234688999999999999999999999999999


Q ss_pred             cCCCC-CceEEccCCC
Q 045926          138 DGDTS-KPTIITPLPH  152 (302)
Q Consensus       138 ~~~~~-~~~~Iepl~~  152 (302)
                      ....+ +.+|||+|..
T Consensus        67 ~~~~G~~I~TiEgl~~   82 (160)
T 3hrd_D           67 GQADESTIITLEGVAE   82 (160)
T ss_dssp             GGGTTEEEECGGGTSB
T ss_pred             hhhCCCceEEeCCCCC
Confidence            87655 4568998864

>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*

Probab=99.11  E-value=4.3e-11  Score=117.49  Aligned_cols=94  Identities=18%  Similarity=0.298  Sum_probs=75.0

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEE-ecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE----CCEEeccc
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHV-DLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI----GGTNTVAC  133 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v-~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V----nG~~~laC  133 (302)
                      +++|+|+.            +.|++ ++++ ++||||+|++++.     .+++.+|++|.||+|+|.|    ||++++||
T Consensus         2 ~~~~~vNg------------~~~~~~~~~~-~~~Ll~~Lr~~~l-----~g~k~gC~~G~CGaCtV~v~~~~~g~~v~sC   63 (462)
T 2w3s_A            2 EIAFLLNG------------ETRRVRIEDP-TQSLLEWLRAEGL-----TGTKEGCNEGDCGACTVMIRDAAGSRAVNAC   63 (462)
T ss_dssp             EEEEEETT------------EEEEEECSCT-TCBHHHHHHHTTC-----TTSCCSCSSSSSCTTEEEEEETTEEEEEETT
T ss_pred             cEEEEECC------------EEEEEecCCC-CCcHHHHHHHcCC-----CccCCCCCCCCcCCcEEEEEecCCCeEEEch
Confidence            47888888            77999 7877 8999999995542     3699999999999999999    99999999


Q ss_pred             cccccCCCC-CceEEccCCC----chhhhhhhhccchhhhhc
Q 045926          134 LKPIDGDTS-KPTIITPLPH----MFVIKDLVVDLTNFYQQY  170 (302)
Q Consensus       134 ~t~v~~~~~-~~~~Iepl~~----~~vikDLvvD~~~~~~~~  170 (302)
                      .+++....+ +.+|||+|.+    +..++.-.++.+.+-+.|
T Consensus        64 l~~~~~~~g~~i~TiEgl~~~~~~~~~~q~a~~~~~~~QCG~  105 (462)
T 2w3s_A           64 LMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMIDHHGSQCGF  105 (462)
T ss_dssp             TCBGGGGTTCEEECGGGTSCTTSCCCHHHHHHHHTTCCSSCT
T ss_pred             hhhHHHhCCCcEEEECCCCCCCCCCCHHHHHHHHhCCCCCCC
Confidence            999998655 4679999974    234555556666655544

>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*

Probab=99.10  E-value=5.3e-11  Score=125.43  Aligned_cols=78  Identities=17%  Similarity=0.356  Sum_probs=67.9

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI  137 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v  137 (302)
                      .+++|+|+.            ++|++++++ ++||||+|++..    +.++++.+|++|.||+|+|.|||++++||.+++
T Consensus         2 ~~~~~~~ng------------~~~~~~~~~-~~~ll~~Lr~~~----~l~g~k~gC~~g~CGaCtv~vdg~~~~sC~~~~   64 (907)
T 1vlb_A            2 IQKVITVNG------------IEQNLFVDA-EALLSDVLRQQL----GLTGVKVGCEQGQCGACSVILDGKVVRACVTKM   64 (907)
T ss_dssp             EEEEEEETT------------EEEEEEECT-TSBHHHHHHHTT----CCTTSCCSSSSSSSCTTEEEETTEEEEGGGCBG
T ss_pred             ceEEEEECC------------EEEEEecCC-CChHHHHHHHhc----CCCeecCCCCCCCcCccEEEECCeEeechHhHH
Confidence            368899988            779999988 899999999852    457899999999999999999999999999999


Q ss_pred             cCC-CC-CceEEccCCC
Q 045926          138 DGD-TS-KPTIITPLPH  152 (302)
Q Consensus       138 ~~~-~~-~~~~Iepl~~  152 (302)
                      ... .+ +.+|||+|..
T Consensus        65 ~~~~~g~~i~Tiegl~~   81 (907)
T 1vlb_A           65 KRVADGAQITTIEGVGQ   81 (907)
T ss_dssp             GGSCTTCEEECHHHHCB
T ss_pred             HHHcCCCcEEEECCCCC
Confidence            887 65 4678999874

>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*

Probab=99.08  E-value=8.7e-11  Score=99.90  Aligned_cols=77  Identities=19%  Similarity=0.309  Sum_probs=63.5

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEE-EEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEEC---------
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSY-HVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIG---------  126 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y-~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~Vn---------  126 (302)
                      .+++|.|+.            +.+ .+++++ +++|||+|++ ++     -...+.+|.+|.||+|+|.||         
T Consensus         3 ~~i~~~vNG------------~~~~~~~~~p-~~~Ll~~LR~~lg-----ltGtK~GC~~G~CGACTVlvd~~~~~~~~~   64 (164)
T 3nvw_A            3 DELVFFVNG------------KKVVEKNADP-ETTLLAYLRRKLG-----LRGTKLGCGEGGCGACTVMLSKYDRLQDKI   64 (164)
T ss_dssp             CCEEEEETT------------EEEEETTCCT-TCBHHHHHHHTSC-----CTTSCCSCSSSSSCTTEEEEEEEETTTTEE
T ss_pred             ceEEEEECC------------EEEEEecCCC-CCCHHHHHHHHcC-----CCCcCCCcCCCCCCCCEEEEcccccccccc
Confidence            358899988            444 567777 8999999997 34     246889999999999999999         


Q ss_pred             -CEEeccccccccCCCC-CceEEccCCC
Q 045926          127 -GTNTVACLKPIDGDTS-KPTIITPLPH  152 (302)
Q Consensus       127 -G~~~laC~t~v~~~~~-~~~~Iepl~~  152 (302)
                       |+++.||.+++....+ +.+|||.|..
T Consensus        65 ~g~~v~SCl~~a~~~~G~~I~TiEGL~~   92 (164)
T 3nvw_A           65 IHFSANACLAPICTLHHVAVTTVEGIGS   92 (164)
T ss_dssp             EEEEEETTTCBGGGCTTCEEECGGGTCC
T ss_pred             CCcEEehhhhhHHHhCCcceEEecccCC
Confidence             9999999999988765 4568998863

>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1

Probab=99.03  E-value=1.5e-10  Score=122.04  Aligned_cols=78  Identities=18%  Similarity=0.333  Sum_probs=66.5

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI  137 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v  137 (302)
                      .+++|+|+.            ++|++++++ ++||||+|++.    -+..+++.+|++|.||+|+|.|||++++||.+++
T Consensus         2 ~~~~~~~ng------------~~~~~~~~~-~~~ll~~Lr~~----~~l~g~k~gC~~G~CGaCtv~vdg~~v~sC~~~~   64 (907)
T 1dgj_A            2 ETKTLIVNG------------MARRLLVSP-NDLLVDVLRSQ----LQLTSVKVGCGKGQCGACTVILDGKVVRACIIKM   64 (907)
T ss_dssp             EEEECEETT------------BCCEEEECT-TCBHHHHHHHT----TCCTTSCCSSSSSSSCTTEEEETTEEEEGGGCBG
T ss_pred             ceEEEEECC------------EEEEEecCC-CCcHHHHHHHh----cCCCccCCCCCCCCcCceEEEECCeEeehhHhHH
Confidence            358888888            558888888 89999999974    1456899999999999999999999999999999


Q ss_pred             cCC-CCC-ceEEccCCC
Q 045926          138 DGD-TSK-PTIITPLPH  152 (302)
Q Consensus       138 ~~~-~~~-~~~Iepl~~  152 (302)
                      ... .+. .+|||+|..
T Consensus        65 ~~~~~g~~i~TiEgl~~   81 (907)
T 1dgj_A           65 SRVAENASVTTLEGIGA   81 (907)
T ss_dssp             GGSCTTCEEECGGGTCB
T ss_pred             HHHcCCCcEEEECCCCC
Confidence            887 664 578999974

>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2

Probab=98.58  E-value=5.9e-08  Score=75.16  Aligned_cols=65  Identities=18%  Similarity=0.262  Sum_probs=47.3

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE---------
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT---------  128 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~---------  128 (302)
                      +.+|+|.--|+         ..+.|++.+ |.||||||++.|..      ...+|+.|.||+|.|+| +|.         
T Consensus         4 ~~~v~~~~~~~---------~~~~~~~~~-g~tlL~a~~~~gi~------i~~~C~~G~Cg~C~v~v~~G~~~~~~~e~~   67 (98)
T 1jq4_A            4 VHTITAVTEDG---------ESLRFECRS-DEDVITAALRQNIF------LMSSCREGGCATCKALCSEGDYDLKGCSVQ   67 (98)
T ss_dssp             EEEEEEEETTT---------EEEEEEEES-CCTHHHHHHHHTCC------CCCSCCSSCCCCCCBCEEECCCCCCCSCTT
T ss_pred             cEEEEEEecCC---------CcEEEEeCC-CChHHHHHHHcCCC------CcCCCCCCCCCCCEEEEEcCccccCccccc
Confidence            56677663222         235667767 89999999998732      45678999999999998 774         


Q ss_pred             ----------EeccccccccC
Q 045926          129 ----------NTVACLKPIDG  139 (302)
Q Consensus       129 ----------~~laC~t~v~~  139 (302)
                                .+|||.+.+..
T Consensus        68 ~L~~~~~~~g~~LaCq~~~~~   88 (98)
T 1jq4_A           68 ALPPEEEEEGLVLLCRTYPKT   88 (98)
T ss_dssp             TSCHHHHHHHCBCTTTCCSSC
T ss_pred             ccCHHHhcCCcEEEeeCEECC
Confidence                      36788888764

>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1

Probab=98.54  E-value=1e-07  Score=73.17  Aligned_cols=57  Identities=28%  Similarity=0.606  Sum_probs=44.6

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEEC-CE-----------------EeccccccccCCCC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIG-GT-----------------NTVACLKPIDGDTS  142 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~Vn-G~-----------------~~laC~t~v~~~~~  142 (302)
                      ++|++++ |.||||||++.|..      ...+|+.|.||+|.|+|. |.                 .+|||.+.+..   
T Consensus        13 ~~~~~~~-g~tlL~a~~~~gi~------i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~L~~~~~~~g~~LaC~~~~~~---   82 (95)
T 1frr_A           13 FTLDVPE-GTTILDAAEEAGYD------LPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPES---   82 (95)
T ss_dssp             EEEEECT-TCCHHHHHHHTTCC------CCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEESS---
T ss_pred             EEEEeCC-CCcHHHHHHHcCCC------CCCCCCCcCCCCCEEEEEeCCccccccccCCHHHHhCCcEEeeECEECC---
Confidence            5667777 99999999998742      445688999999999997 74                 57899998865   


Q ss_pred             CceEEc
Q 045926          143 KPTIIT  148 (302)
Q Consensus       143 ~~~~Ie  148 (302)
                       .++|+
T Consensus        83 -~~~v~   87 (95)
T 1frr_A           83 -DLVIE   87 (95)
T ss_dssp             -CEEEE
T ss_pred             -CEEEE
Confidence             35554

>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1

Probab=98.51  E-value=1.2e-07  Score=73.35  Aligned_cols=57  Identities=23%  Similarity=0.452  Sum_probs=44.4

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE-----------------EeccccccccCCCC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT-----------------NTVACLKPIDGDTS  142 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~-----------------~~laC~t~v~~~~~  142 (302)
                      .+|++++ |.||||||++.|..      ...+|+.|.||+|.|+| +|.                 .+|||.+.+..   
T Consensus        16 ~~~~~~~-g~tlL~a~~~~gi~------i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaC~~~~~~---   85 (98)
T 1frd_A           16 TTIEIDE-ETTILDGAEENGIE------LPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRS---   85 (98)
T ss_dssp             EEEEEET-TSCHHHHHHHTTCC------CCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGCEESS---
T ss_pred             EEEEeCC-CCcHHHHHHHcCCC------cccCCCCCCCCCCEEEEEeCCccccccccCCHHHhhCCcEEEeECEECC---
Confidence            4566667 89999999998742      44568899999999999 775                 57899998865   


Q ss_pred             CceEEc
Q 045926          143 KPTIIT  148 (302)
Q Consensus       143 ~~~~Ie  148 (302)
                       .++|+
T Consensus        86 -d~~v~   90 (98)
T 1frd_A           86 -NCTIK   90 (98)
T ss_dssp             -SEEEE
T ss_pred             -CEEEE
Confidence             35555

>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1

Probab=98.49  E-value=2.1e-07  Score=72.11  Aligned_cols=57  Identities=25%  Similarity=0.498  Sum_probs=44.0

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE-----------------EeccccccccCCCC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT-----------------NTVACLKPIDGDTS  142 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~-----------------~~laC~t~v~~~~~  142 (302)
                      ++|++++ |.||||||++.|.      ....+|+.|.||+|.|+| +|.                 .+|||.+.+..   
T Consensus        14 ~~~~~~~-g~tlL~a~~~~gi------~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~~---   83 (98)
T 1iue_A           14 KKIECNE-DEYILDASERQNV------ELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCYPKS---   83 (98)
T ss_dssp             EEEEEET-TSCHHHHHHHTTC------CCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEESS---
T ss_pred             EEEEeCC-CCcHHHHHHHcCC------CCCCCCCCCcCCCCEEEEeeCCccccccccCCHHHHhCCeEEEeECEECC---
Confidence            5566667 8999999999873      245678999999999997 774                 36899988864   


Q ss_pred             CceEEc
Q 045926          143 KPTIIT  148 (302)
Q Consensus       143 ~~~~Ie  148 (302)
                       .++|+
T Consensus        84 -d~~i~   88 (98)
T 1iue_A           84 -DCVIE   88 (98)
T ss_dssp             -CEEEE
T ss_pred             -CeEEE
Confidence             35555

>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1

Probab=98.44  E-value=2.7e-07  Score=70.88  Aligned_cols=52  Identities=27%  Similarity=0.528  Sum_probs=41.9

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE-----------------EeccccccccC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT-----------------NTVACLKPIDG  139 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~-----------------~~laC~t~v~~  139 (302)
                      ++|++++ |.||||||++.|.      ....+|+.|.||+|.|+| +|.                 .+|||.+.+..
T Consensus        12 ~~~~~~~-g~tlL~a~~~~gi------~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~~   81 (94)
T 1awd_A           12 ETIECPE-DTYILDAAEEAGL------DLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTS   81 (94)
T ss_dssp             EEEECCT-TSCHHHHHHHTTC------CCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEESS
T ss_pred             EEEEECC-CCcHHHHHHHcCC------CCCcCCCCCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeECEECC
Confidence            6677777 9999999999873      245678999999999998 774                 36788888764

>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A

Probab=98.41  E-value=2.9e-07  Score=71.19  Aligned_cols=57  Identities=25%  Similarity=0.426  Sum_probs=44.2

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE-----------------EeccccccccCCCC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT-----------------NTVACLKPIDGDTS  142 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~-----------------~~laC~t~v~~~~~  142 (302)
                      ++|++.+ |.|||+||++.|..      ...+|+.|.||+|.|+| +|.                 .+|||.+.+..   
T Consensus        14 ~~~~~~~-g~tlL~a~~~~gi~------i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~~---   83 (97)
T 1a70_A           14 VEFQCPD-DVYILDAAEEEGID------LPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVS---   83 (97)
T ss_dssp             EEEEEET-TSCHHHHHHHTTCC------CCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGCEESS---
T ss_pred             EEEEeCC-CCcHHHHHHHcCCC------cccCCCCcCCCCCeEEEccCCcCccccccCCHHHhhCCeEEEeECEECC---
Confidence            5666767 89999999998732      45679999999999998 774                 36799888864   


Q ss_pred             CceEEc
Q 045926          143 KPTIIT  148 (302)
Q Consensus       143 ~~~~Ie  148 (302)
                       .++|+
T Consensus        84 -d~~v~   88 (97)
T 1a70_A           84 -DVTIE   88 (97)
T ss_dssp             -CEEEE
T ss_pred             -CEEEE
Confidence             35555

>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1

Probab=98.40  E-value=5.8e-07  Score=68.93  Aligned_cols=51  Identities=24%  Similarity=0.528  Sum_probs=40.3

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE-----------------EeccccccccC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT-----------------NTVACLKPIDG  139 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~-----------------~~laC~t~v~~  139 (302)
                      +.|++.+ |.||||||++.| .      ...+|+.|.||+|.|+| +|.                 .+|||.+.+..
T Consensus        13 ~~~~~~~-g~tlL~a~~~~g-~------i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~~~~~g~~LaCq~~~~~   81 (93)
T 1wri_A           13 ITFDVEP-GERLIDIGSEKA-D------LPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPES   81 (93)
T ss_dssp             EEEEECT-TSCHHHHHHHHS-C------CCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEESS
T ss_pred             EEEEECC-CCcHHHHHHHCc-C------CCCCCCCCCCCCCEEEEecCccCccccccCCHHHHhCCcEEeeeCEECC
Confidence            6677777 999999999986 3      34578999999999998 673                 25788877754

>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...

Probab=98.38  E-value=4.3e-07  Score=70.30  Aligned_cols=52  Identities=25%  Similarity=0.560  Sum_probs=41.1

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE-----------------EeccccccccC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT-----------------NTVACLKPIDG  139 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~-----------------~~laC~t~v~~  139 (302)
                      +++++.+ |.||||||++.|..      ...+|+.|.||+|.|+| +|.                 .+|||.+.+..
T Consensus        16 ~~~~~~~-g~tlL~a~~~~gi~------i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~~   85 (98)
T 1czp_A           16 HEIEVPD-DEYILDAAEEQGYD------LPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTS   85 (98)
T ss_dssp             EEEEEET-TSCHHHHHHHTTCC------CCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEESS
T ss_pred             EEEEeCC-CCCHHHHHHHcCCC------ccCCCCCCCCCCCeEEEccCCcCccccccCCHHHhhCCeEEeeeCEECC
Confidence            5566667 89999999998732      45678999999999997 674                 46789888764

>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}

Probab=98.29  E-value=2e-07  Score=97.00  Aligned_cols=78  Identities=17%  Similarity=0.377  Sum_probs=55.7

Q ss_pred             hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...+...|+.||.|+.+||++.       .+..++   +....++..    .   +.  . ..+.|+.||+|..+||+++
T Consensus       410 i~~~~~~Ci~CG~C~~~CP~~~-------~~~~il---~~~~~G~~~----~---~~--~-~~~~Ci~Cg~C~~vCP~ga  469 (807)
T 3cf4_A          410 LVNMVAKCADCGACLLACPEEI-------DIPEAM---GFAKKGDFS----Y---FE--E-IHDTCIGCRRCEQVCKKEI  469 (807)
T ss_dssp             HHHHHHHCCCCCHHHHHCTTCC-------CHHHHH---HHHHTTCTH----H---HH--H-HHHHCCCCCHHHHHCTTCC
T ss_pred             HHHhHHhCCCCCchhhhCCCCC-------chHHHH---HHHHcCChh----h---hh--h-chhhccchhhHHHhCCCCC
Confidence            3446789999999999999875       222222   222223211    1   11  1 3578999999999999999


Q ss_pred             CHHHHHHHHHHHHhhcCC
Q 045926          278 DPADAIHKMKTKHMLSQP  295 (302)
Q Consensus       278 ~~~~~I~~lR~~l~~~~~  295 (302)
                      ++.+.+..+|+.+.+.+.
T Consensus       470 ~~~~~i~~~r~~l~~~~~  487 (807)
T 3cf4_A          470 PILNVIEKIAQKQIAEEK  487 (807)
T ss_dssp             CHHHHHHHHTHHHHHTCC
T ss_pred             ChHHHHHHHHHHHHhccC
Confidence            999999999999887654

>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*

Probab=98.27  E-value=6.1e-07  Score=97.85  Aligned_cols=94  Identities=16%  Similarity=0.275  Sum_probs=73.0

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEE-ecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEEC----------
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHV-DLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIG----------  126 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v-~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~Vn----------  126 (302)
                      .++|.|+.            +.+++ ++++ .+||||+|++ ++.     -..+.+|.+|.||+|+|.||          
T Consensus         5 ~i~~~vNg------------~~~~~~~~~p-~~~ll~~LR~~~~l-----tgtk~gC~~g~CGaCtV~~~~~~~~~~~~~   66 (1332)
T 3unc_A            5 ELVFFVNG------------KKVVEKNADP-ETTLLAYLRRKLGL-----RGTKLGCGEGGCGACTVMLSKYDRLQDKII   66 (1332)
T ss_dssp             CEEEEETT------------EEEEETTCCT-TCBHHHHHHHTSCC-----TTSCCSCSSSSSCTTEEEEEEEETTTTEEE
T ss_pred             cEEEEECC------------EEEEeecCCC-CCCHHHHHhhhcCC-----CCcCCCcCCCCCCCcEEEEecccccccccC
Confidence            58899988            56765 5777 7999999997 443     25788999999999999995          


Q ss_pred             CEEeccccccccCCCC-CceEEccCCC----chhhhhhhhccchhhhhc
Q 045926          127 GTNTVACLKPIDGDTS-KPTIITPLPH----MFVIKDLVVDLTNFYQQY  170 (302)
Q Consensus       127 G~~~laC~t~v~~~~~-~~~~Iepl~~----~~vikDLvvD~~~~~~~~  170 (302)
                      |+++.||.+++....| +.+|||.|..    +..++.-.++.+.+-+.|
T Consensus        67 ~~~v~sCl~~~~~~~g~~i~TiEgl~~~~~~~hpvq~a~~~~~~~QCG~  115 (1332)
T 3unc_A           67 HFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGF  115 (1332)
T ss_dssp             EEEEETTTCBGGGCTTCEEECGGGTCCTTSCCCHHHHHHHHTTCCSSCT
T ss_pred             CeEeehHHhhHHHhCCCEEEEeccccCCCCCcCHHHHHHHHhCCCCCCC
Confidence            8999999999988766 4568999964    334555666776665544

>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}

Probab=98.18  E-value=3.1e-06  Score=67.13  Aligned_cols=40  Identities=20%  Similarity=0.456  Sum_probs=31.8

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEEC-C
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIG-G  127 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~Vn-G  127 (302)
                      ++|++.+ |.||||||++.|.. +     ..+|+ .|.||+|.|+|. |
T Consensus        17 ~~v~~~~-g~tlL~aa~~~Gi~-i-----~~~C~g~G~CgtC~v~v~~G   58 (113)
T 3ah7_A           17 LTVEVKP-GTNILELAHDHHIE-M-----ESACGGVKACTTCHCIVRKG   58 (113)
T ss_dssp             EEEECCT-TCBHHHHHHHTTCC-C-----CCTTCSSSSCSTTEEEEEES
T ss_pred             eEEEECC-CCcHHHHHHHcCCC-C-----CcCCCCCCCcCCCEEEEcCC
Confidence            5677777 99999999998742 3     35687 699999999984 5

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=98.18  E-value=2.5e-06  Score=79.41  Aligned_cols=52  Identities=25%  Similarity=0.489  Sum_probs=42.1

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCEE---------------------ecccccccc
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGTN---------------------TVACLKPID  138 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~~---------------------~laC~t~v~  138 (302)
                      ++|++.+ |.|||||+++.|..      ...+|+.|.||+|.|+| +|..                     +|||.+.+.
T Consensus        16 ~~~~~~~-g~tll~a~~~~gi~------i~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~l~~~~~~~g~~LaCq~~~~   88 (338)
T 1krh_A           16 RFICIAQ-GETLSDAAYRQQIN------IPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLACQCRPT   88 (338)
T ss_dssp             EEEEECT-TCCHHHHHHHTTCC------CSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEEETTTCEES
T ss_pred             EEEEeCC-CCcHHHHHHHcCCC------cccCCCCcCCCCCEEEEecCcEecccCccccccCCHHHHhCCeEEEEeCEEC
Confidence            6677777 99999999998742      34568999999999998 7742                     689999886


Q ss_pred             C
Q 045926          139 G  139 (302)
Q Consensus       139 ~  139 (302)
                      .
T Consensus        89 ~   89 (338)
T 1krh_A           89 S   89 (338)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1

Probab=98.17  E-value=2.4e-06  Score=65.46  Aligned_cols=55  Identities=18%  Similarity=0.443  Sum_probs=41.5

Q ss_pred             eEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEEC-CE------------------Eecccccccc
Q 045926           79 QSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIG-GT------------------NTVACLKPID  138 (302)
Q Consensus        79 ~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~Vn-G~------------------~~laC~t~v~  138 (302)
                      +.++|++.+ |.|||+||++.+..     ....+|+ .|.||+|.|.|. |.                  .+|||.+.+.
T Consensus        10 ~~~~~~~~~-g~tll~a~~~~gi~-----gi~~~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~~~~~g~rLaCq~~~~   83 (93)
T 1l5p_A           10 VKKQLKFED-DQTLFTVLTEAGLM-----SADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLEDQPANARLACAITLS   83 (93)
T ss_dssp             EEEEEECCT-TEEHHHHHHTTTSS-----CCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHTTSCTTEEEGGGCEEC
T ss_pred             cEEEEEECC-CChHHHHHHHcCCC-----cCCcCCCCcCCcCCCEEEECCCcCCCCCHHHHHHhcCCCCCcEEeeECEEC
Confidence            447788887 99999999987631     1456799 899999999984 42                  2578887775


Q ss_pred             C
Q 045926          139 G  139 (302)
Q Consensus       139 ~  139 (302)
                      .
T Consensus        84 ~   84 (93)
T 1l5p_A           84 G   84 (93)
T ss_dssp             G
T ss_pred             C
Confidence            4

>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1

Probab=98.14  E-value=2.2e-06  Score=67.77  Aligned_cols=39  Identities=21%  Similarity=0.451  Sum_probs=31.2

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCC-CCCccCccEEEEC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSC-REGICGSCAMNIG  126 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C-~~g~CG~C~V~Vn  126 (302)
                      .+|++.+ |.||||||++.|..      ...+| +.|.||+|.|.|.
T Consensus        17 ~~~~~~~-g~tlL~a~~~~gi~------i~~~C~~~G~Cg~C~v~v~   56 (111)
T 1i7h_A           17 AVLEANS-GETILDAALRNGIE------IEHACEKSCACTTCHCIVR   56 (111)
T ss_dssp             EEEECCT-TCBHHHHHHHTTCC------CCCTTSSSSCCSTTEEEEE
T ss_pred             eEEEeCC-CCcHHHHHHHcCCC------CcccCCCCCcCCCCEEEEc
Confidence            5677777 99999999998742      34568 5899999999985

>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*

Probab=98.08  E-value=3.2e-07  Score=77.86  Aligned_cols=107  Identities=20%  Similarity=0.405  Sum_probs=37.8

Q ss_pred             hhhhhhhhccchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCCCcccCCC-CcccHHHHH
Q 045926          154 FVIKDLVVDLTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPE-EYLGPAALL  232 (302)
Q Consensus       154 ~vikDLvvD~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~~-~~lgP~~l~  232 (302)
                      .+++.|.+++.+++.+...+. |-......++  .+...+.......+.++||.||.|+.+||.....-. ....+... 
T Consensus         5 ~~~~~l~~~~~~~~~~~~t~~-yp~~~~~~~~--~~~g~~~~~~~~~d~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~-   80 (182)
T 3i9v_9            5 ALAQSLGITLKYLFSKPVTVP-YPDAPVALKP--RFHGRHVLTRHPNGLEKCIGCSLCAAACPAYAIYVEPAENDPENP-   80 (182)
T ss_dssp             ----------------------CCSSCEECCT--TCCCSEEECBCTTSCBSCCCCCHHHHHCTTCCEEEEEECCCSSSC-
T ss_pred             HHHHHHHHHHHHHcCCCcceE-CCCCCCCCCc--ccCCeEeeccCCCCCccCcccccchhhCCcccEEeeccccccccc-
Confidence            467788888877776543332 2111100000  010000000111246799999999999997542100 00000000 


Q ss_pred             HHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          233 HAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       233 ~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                          .....+..        ..... ..+.|+.||.|+.+||.++
T Consensus        81 ----~~~~~~~~--------~~~~~-~~~~C~~C~~C~~~CP~~A  112 (182)
T 3i9v_9           81 ----VSAGERYA--------KVYEI-NMLRCIFCGLCEEACPTGA  112 (182)
T ss_dssp             ----SSSSSCEE--------EEEEE-ETTTCCCCCHHHHHCSSSC
T ss_pred             ----cccccccc--------ceeec-CCCcCcChhChhhhCCccc
Confidence                00000000        00011 4578999999999999995

>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}

Probab=98.03  E-value=6.1e-06  Score=64.23  Aligned_cols=41  Identities=17%  Similarity=0.421  Sum_probs=32.8

Q ss_pred             EEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEECC
Q 045926           80 SYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIGG  127 (302)
Q Consensus        80 ~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~VnG  127 (302)
                      .++|++.+ |.||||||++.+..      ...+|+ .|.||+|.|.|.+
T Consensus        15 ~~~~~~~~-g~tlL~a~~~~gi~------i~~~C~g~G~Cg~C~v~v~~   56 (103)
T 2wlb_A           15 EIMIEGNE-GDSILDLAHANNID------LEGACEGSVACSTCHVIVDP   56 (103)
T ss_dssp             EEEEEECT-TCBHHHHHHHTTCC------CCCTTTTSSCCSTTEEEECH
T ss_pred             EEEEEECC-CCHHHHHHHHcCCC------cCcCCCCCCCcCCCEEEECC
Confidence            36677777 99999999998732      345798 7999999999864

>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}

Probab=97.85  E-value=2.2e-05  Score=61.70  Aligned_cols=55  Identities=16%  Similarity=0.226  Sum_probs=39.0

Q ss_pred             cceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCC-CccCccEEEEC
Q 045926           56 KKVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCRE-GICGSCAMNIG  126 (302)
Q Consensus        56 ~~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~-g~CG~C~V~Vn  126 (302)
                      ...|++|++..  |+.       +.++|++.+ |.|||+|++..+.. +     ..+|+. |.||+|.|.|.
T Consensus         2 ~~~m~~v~~~~--~~g-------~~~~~~~~~-g~tlL~aa~~~gi~-i-----~~~C~g~G~CgtC~v~v~   57 (109)
T 2y5c_A            2 ASDVVNVVFVD--RSG-------QRIPVSGRV-GDNVLHLAQRHGVD-L-----EGACEASLACSTCHVYVS   57 (109)
T ss_dssp             -CCEEEEEEEC--TTS-------CEEEEEEET-TCBHHHHHHHTTCC-C-----CCTTSSSSSCCTTEEEEC
T ss_pred             CCCcEEEEEEc--CCC-------CEEEEEECC-CCcHHHHHHHcCCC-C-----CcCCCCCcCcCccEEEEC
Confidence            34577777643  222       345677777 99999999998742 3     356886 99999999984

>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A

Probab=97.84  E-value=2.4e-05  Score=63.69  Aligned_cols=39  Identities=31%  Similarity=0.707  Sum_probs=31.7

Q ss_pred             EEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CC
Q 045926           82 HVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GG  127 (302)
Q Consensus        82 ~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG  127 (302)
                      ++++.+ |.|||+||++.|..      ...+|+.|.||+|.|+| .|
T Consensus        39 ~v~v~~-g~tlL~aa~~~Gi~------i~~~C~~G~CgtC~v~v~~G   78 (128)
T 1doi_A           39 SLEVNE-GEYILEAAEAQGYD------WPFSCRAGACANCAAIVLEG   78 (128)
T ss_dssp             EEECCT-TSCHHHHHHHTTCC------CCCSSSSSSSSTTEEEEEES
T ss_pred             EEEECC-CCcHHHHHHHcCCC------CccCCCccCCCCCEeEEecC
Confidence            566777 99999999998742      44568999999999998 55

>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*

Probab=97.80  E-value=3.1e-05  Score=60.76  Aligned_cols=55  Identities=13%  Similarity=0.227  Sum_probs=40.1

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCC-CccCccEEEEC
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCRE-GICGSCAMNIG  126 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~-g~CG~C~V~Vn  126 (302)
                      .|++|+|.-  |+.       +.++|++.+ |.|||+|+++.+. .+|++   .+|+. |.||+|.|.|.
T Consensus         5 ~m~~V~~~~--~~g-------~~~~v~~~~-g~tLL~aa~~~gi-~i~~~---~~Cgg~G~CgtC~v~v~   60 (108)
T 2bt6_A            5 DKITVHFIN--RDG-------ETLTTKGKI-GDSLLDVVVQNNL-DIDGF---GACEGTLACSTCHLIFE   60 (108)
T ss_dssp             CEEEEEEEC--TTS-------CEEEEEEET-TCBHHHHHHHTTC-CCTTT---TTTSSSSSBSTTEEECC
T ss_pred             ceEEEEEEC--CCC-------CEEEEEECC-CChHHHHHHHcCC-CCCcc---cCCCCCcCcCCCEEEEC
Confidence            466777653  221       236677777 9999999999874 35543   67986 99999999986

>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A

Probab=97.66  E-value=1.2e-05  Score=54.71  Aligned_cols=47  Identities=26%  Similarity=0.556  Sum_probs=33.1

Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ..+|+.||.|+.+||......                .++.          .  .. ....|+.||.|..+||+++
T Consensus         5 ~~~C~~C~~C~~~CP~~ai~~----------------~~~~----------~--~~-~~~~C~~C~~C~~~CP~~a   51 (55)
T 2fdn_A            5 NEACISCGACEPECPVNAISS----------------GDDR----------Y--VI-DADTCIDCGACAGVCPVDA   51 (55)
T ss_dssp             CTTCCCCCTTGGGCTTCCEEC----------------CSSS----------C--EE-CTTTCCCCCHHHHTCTTCC
T ss_pred             cccCcChhhHHHHCCccccCc----------------CCCE----------E--Ee-ccccCcChhChHHHccccc
Confidence            467999999999999753210                0110          0  11 3468999999999999985

>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1

Probab=97.56  E-value=4.8e-05  Score=59.27  Aligned_cols=40  Identities=20%  Similarity=0.550  Sum_probs=31.7

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEEC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIG  126 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~Vn  126 (302)
                      ++|++.+ |.|||+|+++.+. .    ....+|+ .|.||+|.|.|.
T Consensus        13 ~~~~~~~-g~tlL~aa~~~gi-~----~i~~~C~g~G~CgtC~v~v~   53 (105)
T 1b9r_A           13 YAVDAQD-GQSLMEVATQNGV-P----GIVAECGGSCVCATCRIEIE   53 (105)
T ss_dssp             EEEECCT-TCCTTHHHHHHTC-C----CCCCSSTTSSCCCCCCCEEC
T ss_pred             EEEEECC-CChHHHHHHHcCC-C----CcCcCCCCCCCcCcCEEEEC
Confidence            6677777 9999999999873 1    1345698 699999999985

>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1

Probab=97.55  E-value=5.7e-05  Score=55.44  Aligned_cols=49  Identities=22%  Similarity=0.493  Sum_probs=33.7

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc------cccccCC
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK------NCTATCP  274 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg------~C~~vCP  274 (302)
                      +..+|+.||.|+.+||.....-                .++.          .  .. ....|+.||      .|+.+||
T Consensus         4 ~~~~C~~C~~C~~~CP~~ai~~----------------~~~~----------~--~~-~~~~C~~C~~~~~~~~C~~~CP   54 (80)
T 1rgv_A            4 INDDCTACDACVEECPNEAITP----------------GDPI----------Y--VI-DPTKCSECVGAFDEPQCRLVCP   54 (80)
T ss_dssp             CCSCCCCCCTTTTTCTTCCEEC----------------CSSS----------C--EE-CTTTCCTTTTTCSSCHHHHHCS
T ss_pred             eCCCCcChhhHHHHcChhccCc----------------CCCe----------e--EE-cchhCcCCCCcCCccHHHHhcC
Confidence            4568999999999999743210                0110          0  01 345799999      9999999


Q ss_pred             CCCC
Q 045926          275 KGLD  278 (302)
Q Consensus       275 ~gI~  278 (302)
                      +++-
T Consensus        55 ~~Ai   58 (80)
T 1rgv_A           55 ADCI   58 (80)
T ss_dssp             SCCC
T ss_pred             cccE
Confidence            9853

>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}

Probab=97.52  E-value=5.3e-05  Score=55.92  Aligned_cols=48  Identities=21%  Similarity=0.439  Sum_probs=33.0

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc------cccccCC
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK------NCTATCP  274 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg------~C~~vCP  274 (302)
                      +..+|+.||.|+.+||.....                +.++.          .  .. ....|+.||      .|+.+||
T Consensus         4 ~~~~C~~C~~C~~~CP~~ai~----------------~~~~~----------~--~~-~~~~C~~C~~~~~~~~C~~~CP   54 (82)
T 2fgo_A            4 ITDDCINCDVCEPECPNGAIS----------------QGEEI----------Y--VI-DPNLCTECVGHYDEPQCQQVCP   54 (82)
T ss_dssp             CCTTCCCCCTTGGGCTTCCEE----------------ECSSS----------E--EE-CTTTCCTTTTTCSSCHHHHHCT
T ss_pred             eCCCCCChhhHHHHCChhccC----------------CCCCe----------E--EE-EchhCccCCCcCCCCHhHhhCC
Confidence            456899999999999974321                00110          0  01 345799999      9999999


Q ss_pred             CCC
Q 045926          275 KGL  277 (302)
Q Consensus       275 ~gI  277 (302)
                      .++
T Consensus        55 ~~A   57 (82)
T 2fgo_A           55 VDC   57 (82)
T ss_dssp             TCC
T ss_pred             ccc
Confidence            874

>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*

Probab=97.50  E-value=1.3e-05  Score=58.56  Aligned_cols=57  Identities=21%  Similarity=0.490  Sum_probs=34.7

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      +...|+.||.|+.+||.........              ++....      .+.... ....|+.||.|+.+||.++-
T Consensus         6 ~~~~C~~Cg~C~~~CP~~a~~~~~~--------------~~~~~~------~~~~~~-~~~~C~~Cg~C~~~CP~~ai   62 (80)
T 1jb0_C            6 IYDTCIGCTQCVRACPTDVLEMVPW--------------DGCKAG------QIASSP-RTEDCVGCKRCETACPTDFL   62 (80)
T ss_dssp             EETTCCCCCHHHHHCTTCCCEEEEC--------------SSSTTS------EEEECT-TGGGCCCCCHHHHHCCSSSC
T ss_pred             cCCcCcChhHHHHHCCccccccccc--------------cccccc------ccccCC-CCCcCcCcCChhhhCCCCcc
Confidence            4578999999999999754210000              000000      000011 34689999999999999863

>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}

Probab=97.48  E-value=4.1e-05  Score=57.04  Aligned_cols=47  Identities=23%  Similarity=0.528  Sum_probs=32.5

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc------cccccCC
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK------NCTATCP  274 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg------~C~~vCP  274 (302)
                      +..+|+.||.|+.+||......                .++.          .  .. ....|+.||      .|+.+||
T Consensus         4 ~~~~C~~C~~C~~~CP~~ai~~----------------~~~~----------~--~~-~~~~C~~C~~~~~~~~C~~~CP   54 (85)
T 2zvs_A            4 ITKKCINCDMCEPECPNEAISM----------------GDHI----------Y--EI-NSDKCTECVGHYETPTCQKVCP   54 (85)
T ss_dssp             ECTTCCCCCTTTTTCTTCCEEC----------------CSSS----------C--EE-CGGGCCTTTTTCSSCHHHHHCS
T ss_pred             eCCcCcChhHHHHHCchhccCc----------------CCCc----------e--EE-eChhccCCCCcCCccHhhHhCc
Confidence            3468999999999999643210                0100          0  01 345799999      9999999


Q ss_pred             C-C
Q 045926          275 K-G  276 (302)
Q Consensus       275 ~-g  276 (302)
                      + +
T Consensus        55 ~~~   57 (85)
T 2zvs_A           55 IPN   57 (85)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            9 5

>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A

Probab=97.48  E-value=1.4e-05  Score=61.43  Aligned_cols=60  Identities=18%  Similarity=0.312  Sum_probs=35.9

Q ss_pred             hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...+..+|+.||.|+.+||.......+..+            ......       ..... ....|+.||.|+.+||+++
T Consensus        38 ~~id~~~C~~Cg~C~~~CP~~ai~~~~~~~------------~~~~~~-------~~~~~-~~~~C~~Cg~C~~~CP~~A   97 (103)
T 1xer_A           38 VGVDFDLCIADGSCINACPVNVFQWYDTPG------------HPASEK-------KADPV-NEQACIFCMACVNVCPVAA   97 (103)
T ss_dssp             EEEETTTCCCCCHHHHHCTTCCCEEEECTT------------CSSCSE-------EEECT-TGGGCCCCCHHHHHCTTCC
T ss_pred             EEEehhhCCChhhHHHHcCccCeecccccC------------cccccc-------ceeec-CcccccChhhHHHhccccc
Confidence            345667899999999999965321000000            000000       00011 3468999999999999985

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A

Probab=97.46  E-value=4.4e-05  Score=52.28  Aligned_cols=51  Identities=22%  Similarity=0.475  Sum_probs=33.2

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .+..+|+.||.|+.+||......                .++...        +.+   ....|..||.|+.+||+++
T Consensus         5 i~~~~C~~C~~C~~~Cp~~~~~~----------------~~~~~~--------~~~---~~~~c~~C~~C~~~CP~~A   55 (60)
T 1rof_A            5 VDADACIGCGVCENLCPDVFQLG----------------DDGKAK--------VLQ---PETDLPCAKDAADSCPTGA   55 (60)
T ss_dssp             ECTTTCCSCCSSTTTCTTTBCCC----------------SSSCCC--------BSC---SSCCSTTHHHHHHHCTTCC
T ss_pred             EchhhCCCChHHHHhCcHHHeEC----------------CCCCEe--------ecC---chhhHHHHHHHHHhCCHhH
Confidence            35578999999999999622100                011100        000   1357999999999999985

>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A

Probab=97.45  E-value=3.1e-05  Score=57.37  Aligned_cols=50  Identities=24%  Similarity=0.415  Sum_probs=34.2

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc------cccccC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK------NCTATC  273 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg------~C~~vC  273 (302)
                      .+..+|+.||.|+.+||.....                +.++.          .  .. ....|+.||      .|+.+|
T Consensus         3 ~~~~~C~~C~~C~~~CP~~ai~----------------~~~~~----------~--~i-~~~~C~~C~~~~~~~~C~~~C   53 (82)
T 3eun_A            3 MITDECINCDVCEPECPNGAIS----------------QGDET----------Y--VI-EPSLCTECVGHYETSQCVEVC   53 (82)
T ss_dssp             EECTTCCCCCTTGGGCTTCCEE----------------ECSSS----------E--EE-CGGGCCTTTTTCSSCHHHHHC
T ss_pred             EeCCCCcCccchHHHCChhheE----------------cCCCc----------e--EE-chhhcCCCCCCCCccHHHHhC
Confidence            3457899999999999964321                00110          0  01 335799999      999999


Q ss_pred             CCCCC
Q 045926          274 PKGLD  278 (302)
Q Consensus       274 P~gI~  278 (302)
                      |.++-
T Consensus        54 P~~Ai   58 (82)
T 3eun_A           54 PVDAI   58 (82)
T ss_dssp             TTCCE
T ss_pred             Cccce
Confidence            99863

>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...

Probab=97.39  E-value=2.8e-05  Score=60.42  Aligned_cols=49  Identities=22%  Similarity=0.403  Sum_probs=33.9

Q ss_pred             ccccCcccC--cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          201 GLYECILCA--CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       201 ~~~~CI~CG--~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      +..+|+.||  .|+.+||......                .++.          +  .. ....|+.||.|+.+||.++-
T Consensus         4 ~~~~C~~C~~~~C~~~CP~~ai~~----------------~~~~----------~--~i-~~~~C~~Cg~C~~~CP~~ai   54 (106)
T 7fd1_A            4 VTDNCIKCKYTDCVEVCPVDCFYE----------------GPNF----------L--VI-HPDECIDCALCEPECPAQAI   54 (106)
T ss_dssp             ECGGGTTTCCCHHHHHCTTCCEEE----------------CSSC----------E--EE-CTTTCCCCCTTGGGCTTCCE
T ss_pred             CccccCCccCcHHHHHcCccceEc----------------CCCc----------E--EE-CcccCCChhhhHHhCCChhh
Confidence            457899999  9999999743210                0110          0  01 23579999999999999874

>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A

Probab=97.39  E-value=7.6e-05  Score=54.36  Aligned_cols=49  Identities=22%  Similarity=0.316  Sum_probs=33.6

Q ss_pred             ccccCcc--cCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          201 GLYECIL--CACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       201 ~~~~CI~--CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      +..+|+.  ||.|+.+||.....    +            .++.          .  .. ....|+.||.|+.+||.++-
T Consensus         4 ~~~~C~~c~C~~C~~~Cp~~ai~----~------------~~~~----------~--~~-~~~~C~~Cg~C~~~CP~~ai   54 (77)
T 1bc6_A            4 ITEPCIGTKDASCVEVCPVDCIH----E------------GEDQ----------Y--YI-DPDVCIDCGACEAVCPVSAI   54 (77)
T ss_dssp             CCSTTTTCCCCSSTTTCTTCCEE----E------------CSSS----------E--EE-CTTTCCSCCSHHHHSGGGSS
T ss_pred             eCccCCCCCcchhHHhcccccEE----e------------CCCc----------E--EE-CcccCcCccCCHhhcCccce
Confidence            4568999  99999999974321    0            0110          0  11 34589999999999998853

>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0

Probab=97.39  E-value=0.00026  Score=55.21  Aligned_cols=43  Identities=14%  Similarity=0.336  Sum_probs=33.8

Q ss_pred             eEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEECC
Q 045926           79 QSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIGG  127 (302)
Q Consensus        79 ~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~VnG  127 (302)
                      +.+.|++.+ |.|||+||++.+..   .  ...+|+ .|.||+|.|.|..
T Consensus        11 ~~~~~~~~~-g~tll~a~~~~gi~---~--i~~~C~G~G~CgtC~v~v~~   54 (104)
T 3lxf_A           11 TRTEIQAEP-GLSLMEALRDAGID---E--LLALCGGCCSCATCHVLVAP   54 (104)
T ss_dssp             CEEEEECCT-TSBHHHHHHHTTCT---T--CCCTTCSSSSCSTTEEEECG
T ss_pred             CEEEEEECC-CChHHHHHHHcCCC---C--CCcCCCCCCCCCCCEEEECC
Confidence            357888888 99999999998732   1  335798 8999999999853

>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*

Probab=97.36  E-value=5e-05  Score=73.47  Aligned_cols=68  Identities=16%  Similarity=0.288  Sum_probs=42.4

Q ss_pred             hhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926          197 KKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       197 ~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      ....+..+|+.||.|+.+||......                .++...       .+   . ....|+.||.|+.+||++
T Consensus        27 ~i~~d~~kCi~Cg~C~~~CP~~ai~~----------------~~~~~~-------~i---~-~~~~C~~Cg~C~~~CP~~   79 (421)
T 1hfe_L           27 FVQIDEAKCIGCDTCSQYCPTAAIFG----------------EMGEPH-------SI---P-HIEACINCGQCLTHCPEN   79 (421)
T ss_dssp             SEEECTTTCCCCCHHHHHCTTCCCBC----------------CTTSCC-------BC---C-CGGGCCCCCTTGGGCTTC
T ss_pred             eEEECcccCCCccHHHHhcCcCceec----------------ccccce-------ee---c-ChhhCCchhhHHHhhCcC
Confidence            45567889999999999999743210                011000       00   0 235799999999999998


Q ss_pred             CCHH--HHHHHHHHHHh
Q 045926          277 LDPA--DAIHKMKTKHM  291 (302)
Q Consensus       277 I~~~--~~I~~lR~~l~  291 (302)
                      +-..  ..+..+...+.
T Consensus        80 Ai~~~~~~~~~v~~~l~   96 (421)
T 1hfe_L           80 AIYEAQSWVPEVEKKLK   96 (421)
T ss_dssp             CEEESCCCHHHHHHHHH
T ss_pred             Ccccccccchhhhhhhc
Confidence            6532  23444444443

>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}

Probab=97.35  E-value=0.00029  Score=57.11  Aligned_cols=55  Identities=16%  Similarity=0.378  Sum_probs=38.9

Q ss_pred             ceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEEC
Q 045926           57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIG  126 (302)
Q Consensus        57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~Vn  126 (302)
                      ..|.+|++.-  |+.       ++++|++.+ |.|||+||++.+..   .  ...+|+ .|.||+|.|.|.
T Consensus        19 ~~M~~Vt~~~--~~G-------~~~~v~~~~-G~tLL~aa~~~gi~---g--i~~~C~G~G~CgtC~v~v~   74 (126)
T 3hui_A           19 SHMAKINFVD--HTG-------ETRTVEVEE-GATVMEAAIRNAIP---G--VEAECGGACACATCHVYVD   74 (126)
T ss_dssp             CSEEEEEEEC--TTS-------CEEEEEEET-TSBHHHHHHTTTCT---T--CCCTTSSSSCCSTTEEEEC
T ss_pred             CCceEEEEEe--CCC-------CEEEEEECC-CCcHHHHHHHcCCC---C--CccCCCCCCCCCCCEEEEC
Confidence            3467777653  221       346677777 99999999988731   1  335698 799999999985

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1

Probab=97.32  E-value=9.7e-05  Score=50.33  Aligned_cols=52  Identities=19%  Similarity=0.346  Sum_probs=33.0

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .+..+|+.||.|+.+||.....     +          ..++...        +.  . ....|+.||.|+.+||+++
T Consensus         4 i~~~~C~~C~~C~~~Cp~~~~~-----~----------~~~~~~~--------~~--~-~~~~c~~C~~C~~~CP~~A   55 (59)
T 1dwl_A            4 IDHEECIGCESCVELCPEVFAM-----I----------DGEEKAM--------VT--A-PDSTAECAQDAIDACPVEA   55 (59)
T ss_dssp             ESSCCCSSCCGGGGTSTTTEEE-----E----------ECSSCEE--------ES--C-TTCCCGGGGTGGGGSTTCC
T ss_pred             EChhhCcChhHHHHHCCHHhee-----c----------CCCCcEE--------Ee--c-ChhhhhHHHHHHHhCCHhh
Confidence            3457899999999999942100     0          0011100        00  1 2357999999999999986

>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}

Probab=97.32  E-value=0.00018  Score=78.68  Aligned_cols=92  Identities=18%  Similarity=0.265  Sum_probs=65.2

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEE------CCE---
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNI------GGT---  128 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~V------nG~---  128 (302)
                      .+.|.|++            +.++++..+..+|||+-||. ++.     -..+.+|.+|-||+|+|.|      +|+   
T Consensus         9 ~l~F~vNG------------~~v~~~~~~p~~tLl~~LR~~~~l-----tGTK~gC~EG~CGACtV~v~~~~~~~~~~~~   71 (1335)
T 3zyv_A            9 ELIFFVNG------------KKVTERNADPEVNLLFYLRKVIRL-----TGTKYGCGGGDCGACTVMISRYDPISKRISH   71 (1335)
T ss_dssp             CEEEEETT------------EEEEESSCCTTCBHHHHHHHTTCC-----TTSCCSCSSSSSCTTEEEEEEEETTTTEEEE
T ss_pred             eEEEEECC------------EEEEeCCCCcCccHHHHHhccCCC-----cccccccCCCCCcceEEEEeeEeCCCCeEEE
Confidence            47788887            55766533337999999997 332     1456789999999999998      453   


Q ss_pred             -EeccccccccCCCC-CceEEccCCC----chhhhhhhhccchhh
Q 045926          129 -NTVACLKPIDGDTS-KPTIITPLPH----MFVIKDLVVDLTNFY  167 (302)
Q Consensus       129 -~~laC~t~v~~~~~-~~~~Iepl~~----~~vikDLvvD~~~~~  167 (302)
                       .+.||.+++-...| ..+|||.|.+    +--++.-+++.+.--
T Consensus        72 ~avNsCl~~l~~~~g~~v~TvEglg~~~~~lHpvQ~~~a~~hgsQ  116 (1335)
T 3zyv_A           72 FSATACLVPICSLHGAAVTTVEGIGSTKTRIHPVQERIAKGHGTQ  116 (1335)
T ss_dssp             EEEETTTCBGGGCTTCEEECHHHHCCTTSCCCHHHHHHHHTTCCS
T ss_pred             EEhhHHHHHHHHhcCCEEEeeCCCCCCCCCCCHHHHHHHhcCCCc
Confidence             56799999988665 4678999864    334445555655533

>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A

Probab=97.28  E-value=0.00029  Score=54.80  Aligned_cols=41  Identities=15%  Similarity=0.385  Sum_probs=31.9

Q ss_pred             EEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEEC
Q 045926           80 SYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIG  126 (302)
Q Consensus        80 ~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~Vn  126 (302)
                      .++|++.+ |.|||+|+++.+. .    ....+|+ .|.||+|.|.|.
T Consensus        12 ~~~~~~~~-g~tlLeaa~~~gi-~----~i~~~C~g~G~CgtC~v~v~   53 (106)
T 1xlq_A           12 RRELDVAD-GVSLMQAAVSNGI-Y----DIVGDCGGSASCATCHVYVN   53 (106)
T ss_dssp             EEEEECCT-TCBHHHHHHHTTC-T----TSCCTTCSSSSSCTTEEEEC
T ss_pred             EEEEEECC-CCcHHHHHHHcCC-C----CCCcCCCCCcccCcCEEEEC
Confidence            36777877 9999999999873 2    1345685 799999999985

>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A

Probab=97.24  E-value=0.00029  Score=54.80  Aligned_cols=41  Identities=17%  Similarity=0.382  Sum_probs=32.0

Q ss_pred             EEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEEC
Q 045926           80 SYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIG  126 (302)
Q Consensus        80 ~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~Vn  126 (302)
                      .++|++.+ |.|||+|+++.+. .    ....+|+ .|.||+|.|.|.
T Consensus        12 ~~~~~~~~-g~tlL~aa~~~gi-~----~i~~~C~g~G~CgtC~v~v~   53 (106)
T 1uwm_A           12 RHEVEAKP-GLTVMEAARDNGV-P----GIDADCGGACACSTCHAYVD   53 (106)
T ss_dssp             EEEEECCT-TSBHHHHHHTTTC-T----TCCCTTSSSSSSCTTEEEEC
T ss_pred             EEEEEECC-CCcHHHHHHHcCC-C----CcccCCCCCCCcCcCEEEEC
Confidence            36777877 9999999999873 2    1345685 799999999985

>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2

Probab=97.18  E-value=4.9e-05  Score=55.62  Aligned_cols=49  Identities=18%  Similarity=0.298  Sum_probs=33.7

Q ss_pred             ccccCcc--cCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          201 GLYECIL--CACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       201 ~~~~CI~--CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      +..+|+.  ||.|+.+||......                .++.          +  .. ....|+.||.|+.+||.++-
T Consensus         4 ~~~~C~~c~C~~C~~~CP~~ai~~----------------~~~~----------~--~~-~~~~C~~C~~C~~~CP~~Ai   54 (78)
T 1h98_A            4 ICEPCIGVKDQSCVEVCPVECIYD----------------GGDQ----------F--YI-HPEECIDCGACVPACPVNAI   54 (78)
T ss_dssp             ECGGGTTTCCCHHHHHCTTCCEEE----------------CSSS----------E--EE-CTTTCCCCCTHHHHCTTCCE
T ss_pred             EchhCCCCCcChhhhhcCccceEc----------------CCCE----------E--EE-CcccCCcHhHHHHhCCccce
Confidence            4568999  999999999743210                0110          0  01 34579999999999999863

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}

Probab=97.17  E-value=0.00064  Score=68.81  Aligned_cols=52  Identities=25%  Similarity=0.555  Sum_probs=40.4

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEE-CCE-----------------EeccccccccC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNI-GGT-----------------NTVACLKPIDG  139 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~V-nG~-----------------~~laC~t~v~~  139 (302)
                      .++++.+ |.|||||+++.+..      ...+|+ .|.||+|.|.| .|.                 .+|+|.+.+..
T Consensus        13 ~~v~v~~-G~tLLeAa~~aGi~------ip~~C~G~G~CGtC~v~V~~G~v~~~e~~~Ls~~e~~~G~rLaCqa~~~s   83 (631)
T 3zyy_X           13 KEVAISE-NTNLMEALNLAGIN------IKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLACQTYPES   83 (631)
T ss_dssp             EEEEECT-TSCHHHHHHHHTCC------CCCSCCCSSCCSTTEEEEEESCEEESCCTTCCHHHHHTTEEETTTEEECS
T ss_pred             eEEEECC-CCcHHHHHHHcCCC------CCcCCCCCCcCCCCEEEEeeCcccccccccCCHHHhcCCcEEeeeCEECC
Confidence            4566667 89999999998742      456799 89999999987 332                 47899998864

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A

Probab=97.17  E-value=4.3e-05  Score=52.30  Aligned_cols=51  Identities=14%  Similarity=0.404  Sum_probs=32.7

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .+ .+|+.||.|+.+||......                .++...        ..+ . ....|..||.|+.+||+++
T Consensus         4 id-~~C~~C~~C~~~CP~~~~~~----------------~~~~~~--------~~~-~-~~~~C~~C~~C~~~CP~~A   54 (58)
T 1f2g_A            4 VN-DDCMACEACVEICPDVFEMN----------------EEGDKA--------VVI-N-PDSDLDCVEEAIDSCPAEA   54 (58)
T ss_dssp             CT-TTCCCCCHHHHHCTTTEEEC----------------SSSSSE--------EES-C-TTCCSTHHHHHHHTCSSCC
T ss_pred             EC-CcCccchHHHHhCCccEEEC----------------CCCcEE--------EeC-C-CccchHHHHHHHhhCChhh
Confidence            35 78999999999999632100                001000        000 0 1357999999999999986

>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}

Probab=97.07  E-value=9.8e-05  Score=57.03  Aligned_cols=49  Identities=18%  Similarity=0.283  Sum_probs=33.6

Q ss_pred             ccccCccc--CcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          201 GLYECILC--ACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       201 ~~~~CI~C--G~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      +..+|+.|  |.|+.+||.....                +.+..          .  .. ....|+.||.|+.+||.++-
T Consensus         4 ~~~~C~~C~c~~C~~~CP~~ai~----------------~~~~~----------~--~~-~~~~C~~Cg~C~~~CP~~Ai   54 (105)
T 2v2k_A            4 IAEPCVDVKDKACIEECPVDCIY----------------EGARM----------L--YI-HPDECVDCGACEPVCPVEAI   54 (105)
T ss_dssp             ECGGGTTTCCCHHHHHCTTCCEE----------------ECSSC----------E--EE-CTTTCCCCCCSGGGCTTCCE
T ss_pred             ecccCCCCCcChhhhhcCccccC----------------cCCCc----------E--EE-eCCcCcchhhHHHhCCccCE
Confidence            45689988  9999999974321                00110          0  01 34589999999999999863

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=97.03  E-value=0.00062  Score=62.87  Aligned_cols=40  Identities=25%  Similarity=0.655  Sum_probs=31.3

Q ss_pred             EEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE
Q 045926           82 HVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT  128 (302)
Q Consensus        82 ~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~  128 (302)
                      ++++.+ |.||||||++.|..      ...+|+.|.||+|.|+| .|.
T Consensus       248 ~~~~~~-~~~ll~a~~~~g~~------~~~~C~~G~Cg~C~~~v~~G~  288 (321)
T 2pia_A          248 SFEIPA-NRSILEVLRDANVR------VPSSCESGTCGSCKTALCSGE  288 (321)
T ss_dssp             EEEECT-TSCHHHHHHHTTCC------CCCSCSSSSSCTTEEEEEESC
T ss_pred             EEEECC-CCcHHHHHHHcCCC------CCCCCCCCCCCCCEEEEecCc
Confidence            345556 89999999998742      45679999999999987 464

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A

Probab=96.85  E-value=7.1e-05  Score=52.30  Aligned_cols=52  Identities=19%  Similarity=0.353  Sum_probs=32.9

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhcc-CcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICD-SRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d-~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .+..+|+.||.|+.+|| ..+.-+               .+ +...        +. .. ....|..||.|+.+||+++
T Consensus         6 id~~~C~~Cg~C~~~CP-~~~~~~---------------~~~~~~~--------~~-~~-~~~~C~~C~~C~~~CP~~A   58 (64)
T 1dax_A            6 VDQDECIACESCVEIAP-GAFAMD---------------PEIEKAY--------VK-DV-EGASQEEVEEAMDTCPVQC   58 (64)
T ss_dssp             ECSTTCCSCCHHHHHCT-TTEEEC---------------SSSSSEE--------EC-CG-GGSCHHHHHHHHHHSSSCC
T ss_pred             EccccCCCchHHHHhCC-ccEeEc---------------CCCCEEE--------Ee-cC-CCcchhHHHHHHHhCCHhh
Confidence            45578999999999999 321100               00 1100        00 00 2357999999999999986

>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A

Probab=96.81  E-value=0.00025  Score=57.21  Aligned_cols=41  Identities=15%  Similarity=0.286  Sum_probs=11.5

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEEC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIG  126 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~Vn  126 (302)
                      ++|++.+ |.|||+|++..+.. +|.   ...|+ .|.||+|.|.|.
T Consensus        18 ~~v~~~~-G~tLl~aa~~~gi~-i~g---~~~CgG~g~CgtC~v~v~   59 (123)
T 3n9z_C           18 LTTKGKV-GDSLLDVVVENNLD-IDG---FGACEGTLACSTCHLIFE   59 (123)
T ss_dssp             ------------------------------CTTCSSSSCSTTBC---
T ss_pred             EEEEECC-CCcHHHHHHHcCCC-CCc---CCCCCCCCEeCCCeeEEe
Confidence            6677777 99999999998742 221   25697 799999999886

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.76  E-value=0.0012  Score=64.59  Aligned_cols=65  Identities=15%  Similarity=0.110  Sum_probs=47.6

Q ss_pred             ceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccC-CCCCc--cCccEEEECCEE-ecc
Q 045926           57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRS-CREGI--CGSCAMNIGGTN-TVA  132 (302)
Q Consensus        57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~-C~~g~--CG~C~V~VnG~~-~la  132 (302)
                      +.+++|+|+.            +++++  .+ |.||++||...+.   |.|++... =+.|.  ||.|.|+|||.+ +.+
T Consensus        13 ~~~v~~~~dg------------~~~~~--~~-g~ti~~a~~~~g~---~~~~~~~~~~p~g~~~~~~c~v~v~g~~~~~a   74 (493)
T 1y56_A           13 GKKVTIYFEG------------KELEA--YE-GEKLPVALLANEI---YWLTTSNEGRKRGAFTFGPVPMTVNGVKGLEA   74 (493)
T ss_dssp             SCEEEEEETT------------EEEEE--ET-TCBHHHHHHHTTC---CCCEECTTSCEECSSSSSCCEEBSSSCTTEEG
T ss_pred             CCeEEEEECC------------EEEEe--cC-CCHHHHHHHHCCC---ceecCCCCCCCCccccceEEEEEECCEecccc
Confidence            3468888877            44555  46 9999999998773   56664322 12355  789999999975 689


Q ss_pred             ccccccC
Q 045926          133 CLKPIDG  139 (302)
Q Consensus       133 C~t~v~~  139 (302)
                      |.|.+.+
T Consensus        75 c~~~v~~   81 (493)
T 1y56_A           75 RRIKVKD   81 (493)
T ss_dssp             GGCBCCT
T ss_pred             eeEEccc
Confidence            9999976

>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=96.69  E-value=0.00021  Score=60.45  Aligned_cols=53  Identities=23%  Similarity=0.496  Sum_probs=34.4

Q ss_pred             cccccCcccC-----cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCC
Q 045926          200 DGLYECILCA-----CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCP  274 (302)
Q Consensus       200 ~~~~~CI~CG-----~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP  274 (302)
                      .+..+|+.||     .|+.+||.....                 .+....      ..+  .. ....|+.||.|+.+||
T Consensus         4 id~~~C~gC~~c~~~~C~~~CP~~ai~-----------------~~~~~~------~~~--~~-d~~~C~~Cg~Cv~~CP   57 (166)
T 3gyx_B            4 VDPSKCDGCKGGEKTACMYICPNDLMI-----------------LDPEEM------KAF--NQ-EPEACWECYSCIKICP   57 (166)
T ss_dssp             ECTTTCCCCCSSSCCHHHHHCTTSCEE-----------------EETTTT------EEE--ES-CGGGCCCCCHHHHHCS
T ss_pred             EcchhcCCCCCCCcchhHHhCCccccE-----------------EecCCc------eeE--ec-CcccCcccChHhHhCC
Confidence            3457899999     999999974310                 010000      000  01 2358999999999999


Q ss_pred             CCCC
Q 045926          275 KGLD  278 (302)
Q Consensus       275 ~gI~  278 (302)
                      .++-
T Consensus        58 ~~Ai   61 (166)
T 3gyx_B           58 QGAI   61 (166)
T ss_dssp             SCCE
T ss_pred             ccce
Confidence            9863

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*

Probab=96.68  E-value=0.00024  Score=77.09  Aligned_cols=20  Identities=30%  Similarity=0.541  Sum_probs=17.2

Q ss_pred             cccccCcccCcccCCCCCcc
Q 045926          200 DGLYECILCACCTTSCPSYW  219 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~  219 (302)
                      .+..+||+||.|+.+||...
T Consensus       683 ~d~~kCi~Cg~Cv~vCP~~A  702 (1231)
T 2c42_A          683 WVPENCIQCNQCAFVCPHSA  702 (1231)
T ss_dssp             ECTTTCCCCCHHHHHCSSCC
T ss_pred             EeCccCCchhhHHHhCCccc
Confidence            45689999999999999754

>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*

Probab=96.64  E-value=0.00024  Score=59.08  Aligned_cols=52  Identities=23%  Similarity=0.487  Sum_probs=34.0

Q ss_pred             cccccCcccC-----cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCC
Q 045926          200 DGLYECILCA-----CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCP  274 (302)
Q Consensus       200 ~~~~~CI~CG-----~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP  274 (302)
                      .+..+|+.||     .|+.+||.....                 .+.....      ..  .. ....|+.||.|+.+||
T Consensus         5 vd~~~C~~C~~~~~~~C~~~CP~~ai~-----------------~~~~~~~------~~--~i-d~~~C~~Cg~Cv~~CP   58 (150)
T 1jnr_B            5 VNPEKCDGCKALERTACEYICPNDLMT-----------------LDKEKMK------AY--NR-EPDMCWECYSCVKMCP   58 (150)
T ss_dssp             ECTTTCCSCCSSSSCHHHHHCTTSCEE-----------------EETTTTE------EE--ES-CGGGCCCCCHHHHHCT
T ss_pred             ECcccCCCCCCcccccchhhcCccCeE-----------------EecCCce------ee--ee-CcccCcCHhHHHHhCC
Confidence            3457899999     999999974311                 0100000      00  01 2357999999999999


Q ss_pred             CCC
Q 045926          275 KGL  277 (302)
Q Consensus       275 ~gI  277 (302)
                      .++
T Consensus        59 ~~A   61 (150)
T 1jnr_B           59 QGA   61 (150)
T ss_dssp             TCC
T ss_pred             ccc
Confidence            985

>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*

Probab=96.60  E-value=0.00016  Score=53.21  Aligned_cols=17  Identities=12%  Similarity=0.258  Sum_probs=15.5

Q ss_pred             ccCcccccccccCCCCC
Q 045926          261 YRCRAIKNCTATCPKGL  277 (302)
Q Consensus       261 ~~C~~Cg~C~~vCP~gI  277 (302)
                      ..|..||.|+.+||+++
T Consensus        49 ~~c~~C~~C~~~CP~~A   65 (81)
T 1iqz_A           49 ILIDDMMDAFEGCPTDS   65 (81)
T ss_dssp             GGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHHHhCCHhH
Confidence            47999999999999987

>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A

Probab=96.20  E-value=0.00029  Score=48.99  Aligned_cols=18  Identities=33%  Similarity=0.611  Sum_probs=15.6

Q ss_pred             cccccCcccCcccCCCCC
Q 045926          200 DGLYECILCACCTTSCPS  217 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~  217 (302)
                      .+..+|+.||.|+.+||.
T Consensus         6 id~~~C~~C~~C~~~Cp~   23 (66)
T 1sj1_A            6 VDQDTCIGDAICASLCPD   23 (66)
T ss_dssp             ECTTTCCCCCHHHHHCTT
T ss_pred             ECcccCcCchHHHHhCCc
Confidence            456789999999999995

>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*

Probab=96.11  E-value=0.0015  Score=59.68  Aligned_cols=50  Identities=12%  Similarity=0.121  Sum_probs=35.9

Q ss_pred             hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCccc----------c
Q 045926          198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAI----------K  267 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~C----------g  267 (302)
                      ...+..+||.||.|+.+||.....                 .+..             .. ....|++|          |
T Consensus        92 v~id~~~CigC~~C~~~CP~~Ai~-----------------~~~~-------------~~-~~~kC~~C~~r~~~~~~~G  140 (274)
T 1ti6_B           92 VLIDPEKAKGKKELLDTCPYGVMY-----------------WNEE-------------EN-VAQKCTMCAHLLDDESWAP  140 (274)
T ss_dssp             EEECTTTTTTCGGGGGGCSSCCCE-----------------EETT-------------TT-EEECCCTTHHHHTCTTCTT
T ss_pred             EEechhhccchHHHHhhCccCCeE-----------------EEcc-------------cC-ccccCCCchhhhhhhccCC
Confidence            345668999999999999964320                 0100             01 34689999          9


Q ss_pred             ---cccccCCCCCC
Q 045926          268 ---NCTATCPKGLD  278 (302)
Q Consensus       268 ---~C~~vCP~gI~  278 (302)
                         .|+++||+++-
T Consensus       141 ~~P~Cv~~CP~~Ai  154 (274)
T 1ti6_B          141 KMPRCAHNCGSFVY  154 (274)
T ss_dssp             CSCHHHHHCSSCCE
T ss_pred             CCcchhhhCCcCce
Confidence               99999999875

>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}

Probab=95.95  E-value=0.001  Score=62.95  Aligned_cols=19  Identities=21%  Similarity=0.565  Sum_probs=16.2

Q ss_pred             cccCcccc---------cccccCCCCCC
Q 045926          260 LYRCRAIK---------NCTATCPKGLD  278 (302)
Q Consensus       260 ~~~C~~Cg---------~C~~vCP~gI~  278 (302)
                      ...|++|+         .|+.+||+++-
T Consensus       208 ~~kC~~C~~r~~~g~~paCv~~CP~~Ai  235 (352)
T 2ivf_B          208 SEKCILCYPRIEKGIANACNRQCPGRVR  235 (352)
T ss_dssp             EEECCTTHHHHTTTBCCHHHHTCTTCCE
T ss_pred             ccccCCCcchhhcCCCChHHHhcCccce
Confidence            46899996         99999998885

>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}

Probab=95.87  E-value=0.00053  Score=64.82  Aligned_cols=54  Identities=20%  Similarity=0.397  Sum_probs=36.3

Q ss_pred             hccccccCcccC--cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC
Q 045926          198 KLDGLYECILCA--CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK  275 (302)
Q Consensus       198 ~~~~~~~CI~CG--~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~  275 (302)
                      .+.....|++|+  .|+.+||+.......              .++.          +  .. ....|+.||.|+.+||.
T Consensus       144 ~~~~~~~C~~C~~~~Cv~~CP~gAi~~~~--------------~~g~----------v--~i-d~~kCigCg~Cv~aCP~  196 (352)
T 2ivf_B          144 FFYLARMCNHCTNPACLAACPTGAIYKRE--------------DNGI----------V--LV-DQERCKGHRHCVEACPY  196 (352)
T ss_dssp             CEEEEECCCCCSSCHHHHHCTTCCEEECT--------------TTCC----------E--EE-CTTTCCCCCHHHHHCTT
T ss_pred             EEECCCCCcCcCCccccccCCCCceeecC--------------CCCe----------E--Ee-chhhcCCchHHHhhcCc
Confidence            345678999999  999999975421000              0110          0  01 23589999999999999


Q ss_pred             CCC
Q 045926          276 GLD  278 (302)
Q Consensus       276 gI~  278 (302)
                      ++.
T Consensus       197 ~Ai  199 (352)
T 2ivf_B          197 KAI  199 (352)
T ss_dssp             CCE
T ss_pred             cce
Confidence            874

>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*

Probab=95.84  E-value=0.0024  Score=55.22  Aligned_cols=18  Identities=28%  Similarity=0.656  Sum_probs=12.3

Q ss_pred             ccCcccc---------cccccCCCCCC
Q 045926          261 YRCRAIK---------NCTATCPKGLD  278 (302)
Q Consensus       261 ~~C~~Cg---------~C~~vCP~gI~  278 (302)
                      ..|++|+         .|+.+||+++-
T Consensus       114 ~kC~~C~~~~~~g~~p~Cv~~CP~~Ai  140 (195)
T 2vpz_B          114 SKCTFCAHRLEKGKVPACVETCPTYCR  140 (195)
T ss_dssp             ECCCTTHHHHHTTCCCHHHHSCTTCCE
T ss_pred             ccCcCcchHHhCCCCchhHhhCCcccE
Confidence            4577777         57777777664

>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*

Probab=95.68  E-value=0.0016  Score=64.35  Aligned_cols=48  Identities=23%  Similarity=0.351  Sum_probs=34.7

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc---------cc
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK---------NC  269 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg---------~C  269 (302)
                      ..+..+|+.||.|+.+||.....                 .+..             .. ....|++||         .|
T Consensus       211 ~id~~kCigCg~Cv~~CP~~AI~-----------------~~~~-------------~~-~~~kC~~Cg~ri~~G~~P~C  259 (512)
T 1q16_B          211 LIDQDKCRGWRMCITGCPYKKIY-----------------FNWK-------------SG-KSEKCIFCYPRIEAGQPTVC  259 (512)
T ss_dssp             EECTTTCCCCCCHHHHCTTCCEE-----------------EETT-------------TT-EEEECCTTHHHHTTTCCCHH
T ss_pred             EECHHHCCCchHHHhhCCcccee-----------------cccC-------------CC-CcccCcCCCchhhcCCCCce
Confidence            45667899999999999964310                 0110             01 345899999         99


Q ss_pred             cccCCCCC
Q 045926          270 TATCPKGL  277 (302)
Q Consensus       270 ~~vCP~gI  277 (302)
                      +.+||.++
T Consensus       260 v~~CP~~A  267 (512)
T 1q16_B          260 SETCVGRI  267 (512)
T ss_dssp             HHTCTTCC
T ss_pred             EeeCchhh
Confidence            99999988

>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*

Probab=95.61  E-value=0.0017  Score=59.65  Aligned_cols=49  Identities=29%  Similarity=0.631  Sum_probs=34.6

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc---------cc
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK---------NC  269 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg---------~C  269 (302)
                      ..+..+|+.||.|+.+||.....                 .+..             .. ....|+.|+         .|
T Consensus       127 ~id~~~CigCg~C~~~CP~~ai~-----------------~~~~-------------~~-~~~kC~~C~~r~~~g~~p~C  175 (294)
T 1kqf_B          127 DFQSENCIGCGYCIAGCPFNIPR-----------------LNKE-------------DN-RVYKCTLCVDRVSVGQEPAC  175 (294)
T ss_dssp             EECGGGCCCCCHHHHHCTTCCCE-----------------EETT-------------TT-EEECCCTTHHHHTTTCCCHH
T ss_pred             EeCcccCCCcchhhhcCCCCCcE-----------------ecCC-------------CC-CeeeCCCccchhhcCccHHH
Confidence            34567899999999999964310                 0110             01 345899998         99


Q ss_pred             cccCCCCCC
Q 045926          270 TATCPKGLD  278 (302)
Q Consensus       270 ~~vCP~gI~  278 (302)
                      +.+||+++-
T Consensus       176 v~~CP~~Ai  184 (294)
T 1kqf_B          176 VKTCPTGAI  184 (294)
T ss_dssp             HHHCTTSCE
T ss_pred             HHhCCcCcE
Confidence            999999875

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.21  E-value=0.00093  Score=71.24  Aligned_cols=51  Identities=24%  Similarity=0.464  Sum_probs=32.8

Q ss_pred             cccccCcccCcccCCCCC--cccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC-C
Q 045926          200 DGLYECILCACCTTSCPS--YWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK-G  276 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~--~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~-g  276 (302)
                      .+..+|+.||.|+.+||.  +...              .  .+....        . ... . ..|+.||.|+.+||. +
T Consensus       948 id~~~C~~Cg~C~~~CP~~~~~ai--------------~--~~~~~~--------~-~~~-~-~~C~~Cg~C~~~CP~~~ 1000 (1025)
T 1gte_A          948 IDEEMCINCGKCYMTCNDSGYQAI--------------Q--FDPETH--------L-PTV-T-DTCTGCTLCLSVCPIID 1000 (1025)
T ss_dssp             ECTTTCCCCCHHHHHHHHHSCSCE--------------E--ECTTTC--------C-EEE-C-TTCCCCCHHHHHCSSTT
T ss_pred             EEcccCcccCHHHHhcCccccCCE--------------E--EeCCCc--------e-EEe-C-ccCCChhHHHhhCCCCC
Confidence            456789999999999995  1110              0  010000        0 011 2 679999999999998 5


Q ss_pred             C
Q 045926          277 L  277 (302)
Q Consensus       277 I  277 (302)
                      +
T Consensus      1001 A 1001 (1025)
T 1gte_A         1001 C 1001 (1025)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*

Probab=95.18  E-value=0.0029  Score=54.64  Aligned_cols=50  Identities=24%  Similarity=0.418  Sum_probs=33.7

Q ss_pred             ccccccCcccC--cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926          199 LDGLYECILCA--CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       199 ~~~~~~CI~CG--~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      ......|+.|+  .|+.+||+......               .++.          +  .. ....|+.||.|+.+||.+
T Consensus        52 ~~~~~~C~~C~~p~C~~~CP~gAi~~~---------------~~g~----------~--~i-d~~~CigC~~C~~~CP~~  103 (195)
T 2vpz_B           52 EFRPEQCLHCENPPCVPVCPTGASYQT---------------KDGL----------V--LV-DPKKCIACGACIAACPYD  103 (195)
T ss_dssp             EEEEEECCCCSSCTTTTTCSSSCEEEC---------------TTSC----------E--EE-CTTTCCCCCHHHHHCTTC
T ss_pred             EECcccCcCccCcHHHHhcCCCceecc---------------cccc----------e--ee-cCCCCCCcChhHhhCCCC
Confidence            44567899999  79999997542100               0110          0  11 345899999999999976

>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5

Probab=95.07  E-value=0.0054  Score=53.71  Aligned_cols=62  Identities=13%  Similarity=0.180  Sum_probs=40.8

Q ss_pred             ccccccCc--ccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCccc------c---
Q 045926          199 LDGLYECI--LCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAI------K---  267 (302)
Q Consensus       199 ~~~~~~CI--~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~C------g---  267 (302)
                      ..+..+|+  .||.|+.+||.....                 .+..             .. ....|+.|      |   
T Consensus       102 ~id~~~C~~~~C~~C~~~CP~~Ai~-----------------~~~~-------------~~-~~~kC~~C~~~~~~G~~p  150 (214)
T 1h0h_B          102 LFTPKTKDLEDYESVISACPYDVPR-----------------KVAE-------------SN-QMAKCDMCIDRITNGLRP  150 (214)
T ss_dssp             EECGGGGGCSCHHHHHHHCTTCCCE-----------------ECTT-------------SS-CEECCCTTHHHHTTTCCC
T ss_pred             EEeHHHCccccccHHHHhcCCCCeE-----------------ecCC-------------Cc-ccCcCCCCcchhhcCCCh
Confidence            44567899  999999999965321                 0100             01 34579999      5   


Q ss_pred             cccccCCCCCC----HHHHHHHHHHHHh
Q 045926          268 NCTATCPKGLD----PADAIHKMKTKHM  291 (302)
Q Consensus       268 ~C~~vCP~gI~----~~~~I~~lR~~l~  291 (302)
                      .|+.+||+++-    ..++....++.+.
T Consensus       151 ~Cv~~CP~~Ai~~~~~~~~~~~~~~~~~  178 (214)
T 1h0h_B          151 ACVTSCPTGAMNFGDLSEMEAMASARLA  178 (214)
T ss_dssp             HHHHHCSSSCEEEEEHHHHHHHHHHHHH
T ss_pred             hHHHhcCcccEEEccHHHHHHHHHHHHH
Confidence            99999999875    4455555555444

>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*

Probab=94.83  E-value=0.0053  Score=60.69  Aligned_cols=54  Identities=22%  Similarity=0.345  Sum_probs=35.6

Q ss_pred             hccccccCcccC--cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC
Q 045926          198 KLDGLYECILCA--CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK  275 (302)
Q Consensus       198 ~~~~~~~CI~CG--~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~  275 (302)
                      .......|++|+  .|+.+||.......              ..++.          +  .. ....|+.||.|+.+||.
T Consensus       177 i~~~~~~C~~C~~~~Cv~aCP~gAI~~~--------------~~~g~----------v--~i-d~~kCigCg~Cv~~CP~  229 (512)
T 1q16_B          177 MMYLPRLCEHCLNPACVATCPSGAIYKR--------------EEDGI----------V--LI-DQDKCRGWRMCITGCPY  229 (512)
T ss_dssp             CEEEEECCCCCSSCHHHHTCTTCCEEEE--------------TTTCC----------E--EE-CTTTCCCCCCHHHHCTT
T ss_pred             EEecCccCcCCCCchhhhhCCcCcEEee--------------cCCCe----------E--EE-CHHHCCCchHHHhhCCc
Confidence            345667999999  69999996432100              00110          0  01 33589999999999999


Q ss_pred             CCC
Q 045926          276 GLD  278 (302)
Q Consensus       276 gI~  278 (302)
                      ++-
T Consensus       230 ~AI  232 (512)
T 1q16_B          230 KKI  232 (512)
T ss_dssp             CCE
T ss_pred             cce
Confidence            874

>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*

Probab=94.75  E-value=0.004  Score=57.22  Aligned_cols=51  Identities=24%  Similarity=0.442  Sum_probs=34.4

Q ss_pred             cccccCcccC--cccCCCCC-cccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926          200 DGLYECILCA--CCTTSCPS-YWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       200 ~~~~~CI~CG--~C~~aCP~-~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      .....|++|+  .|+.+||+ .....               ..++.          +  .. ....|+.||.|+.+||.+
T Consensus        95 ~~~~~C~~C~~~~C~~~CP~~gAi~~---------------~~~g~----------v--~i-d~~~CigCg~C~~~CP~~  146 (294)
T 1kqf_B           95 IRKDGCMHCEDPGCLKACPSAGAIIQ---------------YANGI----------V--DF-QSENCIGCGYCIAGCPFN  146 (294)
T ss_dssp             EEEESCCCBSSCHHHHHCCSTTSEEE---------------ETTSC----------E--EE-CGGGCCCCCHHHHHCTTC
T ss_pred             ECcccCCCcCChhhhhhCCccCcccc---------------ccccc----------e--Ee-CcccCCCcchhhhcCCCC
Confidence            3456899999  89999997 43210               00110          0  01 235899999999999998


Q ss_pred             CC
Q 045926          277 LD  278 (302)
Q Consensus       277 I~  278 (302)
                      +.
T Consensus       147 ai  148 (294)
T 1kqf_B          147 IP  148 (294)
T ss_dssp             CC
T ss_pred             Cc
Confidence            75

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=94.63  E-value=0.049  Score=57.63  Aligned_cols=67  Identities=10%  Similarity=-0.020  Sum_probs=51.5

Q ss_pred             ceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccC------CCCCccCccEEEEC---C
Q 045926           57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRS------CREGICGSCAMNIG---G  127 (302)
Q Consensus        57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~------C~~g~CG~C~V~Vn---G  127 (302)
                      +++++|.|+.            ++++.  .+ |.||+.||...+ ......+|+.+      |..|.|..|.|.|+   |
T Consensus        20 ~~~~~~~~dG------------~~~~~--~~-g~tv~~aL~~~G-v~~~~~s~~~~~prg~~~~~~~c~~~~v~v~~~~~   83 (965)
T 2gag_A           20 EEALSLTVDG------------AKLSA--FR-GDTVASALLANG-VRRAGNSLYLDRPRGIFAAGVEEPNALVTVSARHE   83 (965)
T ss_dssp             EEEEEEEETT------------EEEEE--EE-TCBHHHHHHHTT-CCBCSCCTTTCCCCBCCCSSTTCCSCEEEECCCST
T ss_pred             CCeEEEEECC------------EEEEe--cC-CCHHHHHHHHcC-CeEeecCCCCCCCcccccCCccCCceEEEEccCCC
Confidence            4578888877            44554  45 899999999987 44677775422      78899999999999   6


Q ss_pred             ----E-EeccccccccC
Q 045926          128 ----T-NTVACLKPIDG  139 (302)
Q Consensus       128 ----~-~~laC~t~v~~  139 (302)
                          . ++.||.|.+.+
T Consensus        84 g~~~~~~~~ac~~~~~~  100 (965)
T 2gag_A           84 QDIDESMLPATTVPVTE  100 (965)
T ss_dssp             TCCCEEEEEGGGCBCCT
T ss_pred             CCcCCccccceeeeccc
Confidence                3 56799999976

>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*

Probab=94.62  E-value=0.007  Score=55.10  Aligned_cols=51  Identities=18%  Similarity=0.218  Sum_probs=35.2

Q ss_pred             ccccccCcccCc--ccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926          199 LDGLYECILCAC--CTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       199 ~~~~~~CI~CG~--C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      .+....|++|+.  |+.+||+ .....               .++.          +  .. ....|+.||.|+.+||.+
T Consensus        62 ~~~~~~C~~C~~p~C~~~CP~-Ai~~~---------------~~g~----------v--~i-d~~~CigC~~C~~~CP~~  112 (274)
T 1ti6_B           62 NYRPTPCMHCENAPCVAKGNG-AVYQR---------------EDGI----------V--LI-DPEKAKGKKELLDTCPYG  112 (274)
T ss_dssp             EEEEECCCCCTTCHHHHHTTT-SEEEC---------------TTSC----------E--EE-CTTTTTTCGGGGGGCSSC
T ss_pred             eEcCCcCCCCCChHHHhhChH-Hhhhc---------------cCCc----------E--Ee-chhhccchHHHHhhCccC
Confidence            345678999999  9999998 52100               0110          0  01 335899999999999998


Q ss_pred             CC
Q 045926          277 LD  278 (302)
Q Consensus       277 I~  278 (302)
                      +.
T Consensus       113 Ai  114 (274)
T 1ti6_B          113 VM  114 (274)
T ss_dssp             CC
T ss_pred             Ce
Confidence            75

>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5

Probab=91.94  E-value=0.0074  Score=52.81  Aligned_cols=53  Identities=11%  Similarity=0.144  Sum_probs=34.2

Q ss_pred             ccccccCcccCc--ccCCCC---CcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCc--ccccccc
Q 045926          199 LDGLYECILCAC--CTTSCP---SYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCR--AIKNCTA  271 (302)
Q Consensus       199 ~~~~~~CI~CG~--C~~aCP---~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~--~Cg~C~~  271 (302)
                      .+....|+.|+.  |+.+||   +......+              .++.          +  .. ....|+  .||.|+.
T Consensus        66 ~~~~~~C~~C~~p~C~~~CP~~~~gAi~~~~--------------~~g~----------v--~i-d~~~C~~~~C~~C~~  118 (214)
T 1h0h_B           66 LFFPDQCRHCIAPPCKATADMEDESAIIHDD--------------ATGC----------V--LF-TPKTKDLEDYESVIS  118 (214)
T ss_dssp             EEEEECCCCCSSCHHHHHHTTTCTTSEEECT--------------TTCC----------E--EE-CGGGGGCSCHHHHHH
T ss_pred             eecCCcCcCcCCchhhccCCccccccEEecC--------------CCCe----------E--EE-eHHHCccccccHHHH
Confidence            345678999997  999999   43210000              0010          0  11 235799  9999999


Q ss_pred             cCCCCCC
Q 045926          272 TCPKGLD  278 (302)
Q Consensus       272 vCP~gI~  278 (302)
                      +||.++.
T Consensus       119 ~CP~~Ai  125 (214)
T 1h0h_B          119 ACPYDVP  125 (214)
T ss_dssp             HCTTCCC
T ss_pred             hcCCCCe
Confidence            9999875

>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}

Probab=90.09  E-value=0.11  Score=37.64  Aligned_cols=17  Identities=29%  Similarity=0.780  Sum_probs=15.5

Q ss_pred             ccCcccccccccCCCCC
Q 045926          261 YRCRAIKNCTATCPKGL  277 (302)
Q Consensus       261 ~~C~~Cg~C~~vCP~gI  277 (302)
                      ..|+.||.|+.+||.++
T Consensus         6 ~~C~~C~~C~~~CP~~a   22 (82)
T 2fgo_A            6 DDCINCDVCEPECPNGA   22 (82)
T ss_dssp             TTCCCCCTTGGGCTTCC
T ss_pred             CCCCChhhHHHHCChhc
Confidence            57999999999999876

>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A

Probab=89.96  E-value=0.12  Score=34.32  Aligned_cols=17  Identities=24%  Similarity=0.640  Sum_probs=15.5

Q ss_pred             ccCcccccccccCCCCC
Q 045926          261 YRCRAIKNCTATCPKGL  277 (302)
Q Consensus       261 ~~C~~Cg~C~~vCP~gI  277 (302)
                      ..|+.||.|+.+||.++
T Consensus         6 ~~C~~C~~C~~~CP~~a   22 (55)
T 2fdn_A            6 EACISCGACEPECPVNA   22 (55)
T ss_dssp             TTCCCCCTTGGGCTTCC
T ss_pred             ccCcChhhHHHHCCccc
Confidence            47999999999999986

>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1

Probab=89.66  E-value=0.11  Score=37.37  Aligned_cols=19  Identities=26%  Similarity=0.566  Sum_probs=16.3

Q ss_pred             cccCcccccccccCCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ...|+.||.|+.+||.++-
T Consensus         5 ~~~C~~C~~C~~~CP~~ai   23 (80)
T 1rgv_A            5 NDDCTACDACVEECPNEAI   23 (80)
T ss_dssp             CSCCCCCCTTTTTCTTCCE
T ss_pred             CCCCcChhhHHHHcChhcc
Confidence            3579999999999998763

>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A

Probab=89.61  E-value=0.12  Score=37.42  Aligned_cols=18  Identities=28%  Similarity=0.726  Sum_probs=16.0

Q ss_pred             cccCcccccccccCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...|+.||.|+.+||.++
T Consensus         5 ~~~C~~C~~C~~~CP~~a   22 (82)
T 3eun_A            5 TDECINCDVCEPECPNGA   22 (82)
T ss_dssp             CTTCCCCCTTGGGCTTCC
T ss_pred             CCCCcCccchHHHCChhh
Confidence            357999999999999986

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=89.50  E-value=0.042  Score=54.80  Aligned_cols=20  Identities=20%  Similarity=0.285  Sum_probs=17.2

Q ss_pred             ccccCcccccccccCCCCCC
Q 045926          259 KLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ....|+.||.|..+||+++.
T Consensus       549 ~~~~Ci~C~~C~~~cp~~~i  568 (584)
T 2gmh_A          549 NAQNCVHCKTCDIKDPSQNI  568 (584)
T ss_dssp             CGGGCCCCCHHHHHCTTCCE
T ss_pred             eCCCCcCCCCchhhCCCCCc
Confidence            45689999999999998863

>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}

Probab=89.39  E-value=0.12  Score=37.79  Aligned_cols=18  Identities=22%  Similarity=0.599  Sum_probs=16.0

Q ss_pred             ccCcccccccccCCCCCC
Q 045926          261 YRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       261 ~~C~~Cg~C~~vCP~gI~  278 (302)
                      ..|+.||.|+.+||.++-
T Consensus         6 ~~C~~C~~C~~~CP~~ai   23 (85)
T 2zvs_A            6 KKCINCDMCEPECPNEAI   23 (85)
T ss_dssp             TTCCCCCTTTTTCTTCCE
T ss_pred             CcCcChhHHHHHCchhcc
Confidence            579999999999998863

>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*

Probab=88.72  E-value=0.11  Score=37.06  Aligned_cols=18  Identities=22%  Similarity=0.647  Sum_probs=15.9

Q ss_pred             ccCcccccccccCCCCCC
Q 045926          261 YRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       261 ~~C~~Cg~C~~vCP~gI~  278 (302)
                      ..|+.||.|+.+||.++-
T Consensus         8 ~~C~~Cg~C~~~CP~~a~   25 (80)
T 1jb0_C            8 DTCIGCTQCVRACPTDVL   25 (80)
T ss_dssp             TTCCCCCHHHHHCTTCCC
T ss_pred             CcCcChhHHHHHCCcccc
Confidence            579999999999998763

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A

Probab=87.63  E-value=0.18  Score=33.59  Aligned_cols=18  Identities=22%  Similarity=0.571  Sum_probs=15.5

Q ss_pred             ccCcccccccccCCCCCC
Q 045926          261 YRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       261 ~~C~~Cg~C~~vCP~gI~  278 (302)
                      ..|+.||.|+.+||..+.
T Consensus         8 ~~C~~C~~C~~~Cp~~~~   25 (60)
T 1rof_A            8 DACIGCGVCENLCPDVFQ   25 (60)
T ss_dssp             TTCCSCCSSTTTCTTTBC
T ss_pred             hhCCCChHHHHhCcHHHe
Confidence            579999999999997554

>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A

Probab=87.56  E-value=0.14  Score=38.53  Aligned_cols=18  Identities=28%  Similarity=0.534  Sum_probs=15.8

Q ss_pred             ccCcccccccccCCCCCC
Q 045926          261 YRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       261 ~~C~~Cg~C~~vCP~gI~  278 (302)
                      ..|+.||.|+.+||.++-
T Consensus        43 ~~C~~Cg~C~~~CP~~ai   60 (103)
T 1xer_A           43 DLCIADGSCINACPVNVF   60 (103)
T ss_dssp             TTCCCCCHHHHHCTTCCC
T ss_pred             hhCCChhhHHHHcCccCe
Confidence            579999999999998763

>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*

Probab=86.99  E-value=0.1  Score=50.30  Aligned_cols=18  Identities=28%  Similarity=0.525  Sum_probs=15.8

Q ss_pred             cccCcccccccccCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...|+.||.|..+||+++
T Consensus       283 ~~~Ci~Cg~Ci~~CP~~~  300 (418)
T 3mm5_A          283 NRECVRCMHCINKMPKAL  300 (418)
T ss_dssp             TTTCCCCCHHHHHCTTTE
T ss_pred             hhhcCccChhHHhCcHhh
Confidence            458999999999999865

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A

Probab=86.95  E-value=0.13  Score=34.28  Aligned_cols=17  Identities=29%  Similarity=0.747  Sum_probs=15.3

Q ss_pred             ccCcccccccccCCCCC
Q 045926          261 YRCRAIKNCTATCPKGL  277 (302)
Q Consensus       261 ~~C~~Cg~C~~vCP~gI  277 (302)
                      ..|+.||.|+.+||..+
T Consensus         6 ~~C~~C~~C~~~CP~~~   22 (58)
T 1f2g_A            6 DDCMACEACVEICPDVF   22 (58)
T ss_dssp             TTCCCCCHHHHHCTTTE
T ss_pred             CcCccchHHHHhCCccE
Confidence            68999999999999855

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A

Probab=86.77  E-value=0.16  Score=34.71  Aligned_cols=16  Identities=31%  Similarity=0.719  Sum_probs=14.3

Q ss_pred             ccCcccccccccCCCCC
Q 045926          261 YRCRAIKNCTATCPKGL  277 (302)
Q Consensus       261 ~~C~~Cg~C~~vCP~gI  277 (302)
                      ..|+.||.|+.+|| ++
T Consensus         9 ~~C~~Cg~C~~~CP-~~   24 (64)
T 1dax_A            9 DECIACESCVEIAP-GA   24 (64)
T ss_dssp             TTCCSCCHHHHHCT-TT
T ss_pred             ccCCCchHHHHhCC-cc
Confidence            57999999999999 54

>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*

Probab=86.18  E-value=0.2  Score=41.57  Aligned_cols=18  Identities=33%  Similarity=0.707  Sum_probs=16.1

Q ss_pred             cccCcccccccccCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...|+.||.|+.+||.++
T Consensus        50 ~~~Ci~C~~C~~~CP~~a   67 (182)
T 3i9v_9           50 LEKCIGCSLCAAACPAYA   67 (182)
T ss_dssp             CBSCCCCCHHHHHCTTCC
T ss_pred             CccCcccccchhhCCccc
Confidence            458999999999999876

>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*

Probab=85.26  E-value=0.21  Score=36.00  Aligned_cols=16  Identities=31%  Similarity=0.542  Sum_probs=14.2

Q ss_pred             cccCcccccccccCCC
Q 045926          260 LYRCRAIKNCTATCPK  275 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~  275 (302)
                      ...|+.||.|+.+||.
T Consensus         8 ~~~CigCg~C~~~CP~   23 (81)
T 1iqz_A            8 KETCIACGACGAAAPD   23 (81)
T ss_dssp             TTTCCCCSHHHHHCTT
T ss_pred             cccCcccChhhHhCch
Confidence            3589999999999994

>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...

Probab=83.41  E-value=0.34  Score=36.79  Aligned_cols=19  Identities=42%  Similarity=0.835  Sum_probs=16.1

Q ss_pred             ccccCcccCcccCCCCCcc
Q 045926          201 GLYECILCACCTTSCPSYW  219 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~  219 (302)
                      +...|+.||.|+.+||...
T Consensus        35 ~~~~C~~Cg~C~~~CP~~a   53 (106)
T 7fd1_A           35 HPDECIDCALCEPECPAQA   53 (106)
T ss_dssp             CTTTCCCCCTTGGGCTTCC
T ss_pred             CcccCCChhhhHHhCCChh
Confidence            3467999999999999765

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=83.35  E-value=2.4  Score=31.62  Aligned_cols=60  Identities=5%  Similarity=-0.064  Sum_probs=35.8

Q ss_pred             ceeEEEEEEecCCCCCCCCCceeEEEEecCCCc-hhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccc--
Q 045926           57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECG-PMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVAC--  133 (302)
Q Consensus        57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g-~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC--  133 (302)
                      +.+++|.|+.            ++++  +++ + .||.|+|.+++.  .+             ...+|.|||..+-.-  
T Consensus        18 ~~~M~I~vNG------------e~~e--l~~-~~~Tv~dLL~~L~~--~~-------------~~vaVavNg~iV~~~~~   67 (87)
T 1tyg_B           18 GGRHMLQLNG------------KDVK--WKK-DTGTIQDLLASYQL--EN-------------KIVIVERNKEIIGKERY   67 (87)
T ss_dssp             ----CEEETT------------EEEC--CSS-SCCBHHHHHHHTTC--TT-------------SCCEEEETTEEECGGGT
T ss_pred             CcceEEEECC------------EEEE--CCC-CCCcHHHHHHHhCC--CC-------------CCEEEEECCEECChhhc
Confidence            3455788887            3344  445 6 899999999862  11             126899999876422  


Q ss_pred             -cccccCCCCCceEEc
Q 045926          134 -LKPIDGDTSKPTIIT  148 (302)
Q Consensus       134 -~t~v~~~~~~~~~Ie  148 (302)
                       .+.+.+  ++.+.|-
T Consensus        68 ~~~~L~d--GD~Vei~   81 (87)
T 1tyg_B           68 HEVELCD--RDVIEIV   81 (87)
T ss_dssp             TTSBCCS--SSEEEEE
T ss_pred             CCcCCCC--CCEEEEE
Confidence             456665  4455443

>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*

Probab=82.45  E-value=0.62  Score=42.43  Aligned_cols=30  Identities=30%  Similarity=0.616  Sum_probs=22.4

Q ss_pred             ccccCcccccccccCCCCC-------CHHHHHHHHHH
Q 045926          259 KLYRCRAIKNCTATCPKGL-------DPADAIHKMKT  288 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~gI-------~~~~~I~~lR~  288 (302)
                      .++.|+.||.|..+||+..       -|..++...|.
T Consensus       178 ~~~~CI~CG~C~~aCP~~~~~~~~~lGP~~li~a~r~  214 (282)
T 3vr8_B          178 GLYECILCACCSASCPSYWWNADKYLGPAVLMQAYRW  214 (282)
T ss_pred             hhhhCcccCcCcccCCceeccCCcCCCHHHHHHHHHH
Confidence            6789999999999999763       25555555543

>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}

Probab=82.33  E-value=0.4  Score=36.21  Aligned_cols=19  Identities=32%  Similarity=0.746  Sum_probs=16.2

Q ss_pred             ccccCcccCcccCCCCCcc
Q 045926          201 GLYECILCACCTTSCPSYW  219 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~  219 (302)
                      +...|+.||.|+.+||...
T Consensus        35 ~~~~C~~Cg~C~~~CP~~A   53 (105)
T 2v2k_A           35 HPDECVDCGACEPVCPVEA   53 (105)
T ss_dssp             CTTTCCCCCCSGGGCTTCC
T ss_pred             eCCcCcchhhHHHhCCccC
Confidence            4567999999999999854

>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A

Probab=81.66  E-value=0.49  Score=33.53  Aligned_cols=18  Identities=22%  Similarity=0.536  Sum_probs=15.7

Q ss_pred             cccCcc--cccccccCCCCC
Q 045926          260 LYRCRA--IKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~--Cg~C~~vCP~gI  277 (302)
                      ...|+.  ||.|+.+||.++
T Consensus         5 ~~~C~~c~C~~C~~~Cp~~a   24 (77)
T 1bc6_A            5 TEPCIGTKDASCVEVCPVDC   24 (77)
T ss_dssp             CSTTTTCCCCSSTTTCTTCC
T ss_pred             CccCCCCCcchhHHhccccc
Confidence            357999  999999999986

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1

Probab=81.49  E-value=0.5  Score=31.13  Aligned_cols=18  Identities=22%  Similarity=0.660  Sum_probs=14.9

Q ss_pred             cccCcccccccccCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...|+.||.|+.+||..+
T Consensus         6 ~~~C~~C~~C~~~Cp~~~   23 (59)
T 1dwl_A            6 HEECIGCESCVELCPEVF   23 (59)
T ss_dssp             SCCCSSCCGGGGTSTTTE
T ss_pred             hhhCcChhHHHHHCCHHh
Confidence            357999999999999643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d2bs2b2	106	d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur	8e-37
d1kf6b2	105	d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur	8e-35
d1nekb1	132	a.1.2.1 (B:107-238) Succinate dehydogenase {Escher	2e-34
d1kf6b1	138	a.1.2.1 (B:106-243) Fumarate reductase {Escherichi	2e-34
d2bs2b1	133	a.1.2.1 (B:107-239) Fumarate reductase {Wolinella	5e-34
d1nekb2	106	d.15.4.2 (B:1-106) Succinate dehydogenase iron-sul	1e-31

>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein, N-terminal domain {Wolinella succinogenes [TaxId: 844]} Length = 106

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Wolinella succinogenes [TaxId: 844]

 Score =  125 bits (315), Expect = 8e-37
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 59  MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGIC 118
           M   R+++++P    SKP  Q Y ++ +     +   L  I+   D  L++   CR GIC
Sbjct: 4   MLTIRVFKYDPQSAVSKPHFQEYKIEEA-PSMTIFIVLNMIRETYDPDLNFDFVCRAGIC 62

Query: 119 GSCAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVD 162
           GSC M I G  ++AC             + PLP   +IKDL VD
Sbjct: 63  GSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVD 106

>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  119 bits (301), Expect = 8e-35
 Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 61  EFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGS 120
           +  + R+NP+  D+ P    Y V        +LDAL  IK      LSYR SCR  ICGS
Sbjct: 7   KIEVVRYNPE-VDTAPHSAFYEVPYDA-TTSLLDALGYIKDNLAPDLSYRWSCRMAICGS 64

Query: 121 CAMNIGGTNTVACLKPIDGDTSKPTIITPLPHMFVIKDLVVD 162
           C M +     +AC   +  D +    +  L +  + +DLVVD
Sbjct: 65  CGMMVNNVPKLACKTFLR-DYTDGMKVEALANFPIERDLVVD 105

>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 132

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score =  120 bits (300), Expect = 2e-34
 Identities = 66/127 (51%), Positives = 90/127 (70%), Gaps = 1/127 (0%)

Query: 163 LTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNP 222
           +  FY QY+ I+P+L  N      RE+ Q P  R+KLDGLYECILCACC+TSCPS+WWNP
Sbjct: 1   MGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNP 60

Query: 223 EEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADA 282
           ++++GPA LL AYR++ DSRD  T+ RL  L++    ++RC +I NC + CPKGL+P  A
Sbjct: 61  DKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAF-SVFRCHSIMNCVSVCPKGLNPTRA 119

Query: 283 IHKMKTK 289
           I  +K+ 
Sbjct: 120 IGHIKSM 126

>d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 138

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score =  119 bits (300), Expect = 2e-34
 Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 2/125 (1%)

Query: 163 LTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNP 222
           +T+F +  ++I+P++  N    D     Q+PA   K      CI C  C  +CP +  NP
Sbjct: 1   MTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNP 60

Query: 223 EEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADA 282
            E++GPAA+  A+R+  DSRD   +ER+  L      ++ C  +  C+  CPK +DPA A
Sbjct: 61  -EFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQN-GVWSCTFVGYCSEVCPKHVDPAAA 118

Query: 283 IHKMK 287
           I + K
Sbjct: 119 IQQGK 123

>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 133

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score =  118 bits (297), Expect = 5e-34
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 166 FYQQYKSIEPWLKTNM-VPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEE 224
           F    + +E W+           E R  P   +++  L  CI C CC  +C +     + 
Sbjct: 5   FNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMRED- 63

Query: 225 YLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIH 284
           ++G A L    R++ D  DE T+E    L  D+  ++ C  +  C   CPK L     I 
Sbjct: 64  FVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIA 123

Query: 285 KMK 287
            ++
Sbjct: 124 YLR 126

>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 106

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Succinate dehydogenase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  111 bits (280), Expect = 1e-31
 Identities = 54/108 (50%), Positives = 71/108 (65%), Gaps = 6/108 (5%)

Query: 59  MK-EFRIYRWNPDRPDSKPFLQSYHVDLSECGPM-VLDALQKIKAETDSSLSYRRSCREG 116
           M+ EF IYR+NPD  D  P +Q Y ++  E   M +LDAL ++K E D SLS+RRSCREG
Sbjct: 1   MRLEFSIYRYNPD-VDDAPRMQDYTLEADEGRDMMLLDALIQLK-EKDPSLSFRRSCREG 58

Query: 117 ICGSCAMNIGGTNTVACLKPIDG--DTSKPTIITPLPHMFVIKDLVVD 162
           +CGS  +N+ G N +AC+ PI       K  +I PLP + VI+DLVVD
Sbjct: 59  VCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVD 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d2bs2b2	106	Fumarate reductase iron-sulfur protein, N-terminal	100.0
d1kf6b2	105	Fumarate reductase iron-sulfur protein, N-terminal	100.0
d1nekb2	106	Succinate dehydogenase iron-sulfur protein, N-term	100.0
d1nekb1	132	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.94
d1kf6b1	138	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.93
d2bs2b1	133	Fumarate reductase {Wolinella succinogenes [TaxId:	99.88
d3c8ya2	126	Fe-only hydrogenase, N-terminal domain {Clostridiu	99.41
d1rm6c2	81	4-hydroxybenzoyl-CoA reductase gamma subunit HrcC,	99.39
d1t3qa2	81	Quinoline 2-oxidoreductase small subunit QorS, N-d	99.39
d1ffva2	79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	99.38
d1vlba2	80	Aldehyde oxidoreductase, N-terminal domain {Desulf	99.35
d1dgja2	80	Aldehyde oxidoreductase, N-terminal domain {Desulf	99.33
d1n62a2	79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	99.31
d1jroa2	84	Xanthine dehydrogenase chain A, N-terminal domain	99.09
d2fug33	95	Nadh-quinone oxidoreductase chain 3, Nqo3, N-termi	98.95
d1v97a2	90	Xanthine oxidase, N-terminal domain {Cow (Bos taur	98.88
d2fug34	151	NADH-quinone oxidoreductase chain 3, Nqo3, domain	98.43
d3c8ya3	83	Fe-only hydrogenase, second domain {Clostridium pa	98.31
d1czpa_	98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	98.28
d1hfel2	85	Fe-only hydrogenase larger subunit, N-domain {Desu	98.27
d2c42a5	117	Pyruvate-ferredoxin oxidoreductase, PFOR, domain V	98.26
d1a70a_	97	2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [Ta	98.11
d1dura_	55	Ferredoxin II {Peptostreptococcus asaccharolyticus	98.09
d1krha3	104	Benzoate dioxygenase reductase, N-terminal domain	98.04
d2fug91	154	NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus	98.01
d1awda_	94	2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}	98.0
d2fdna_	55	Ferredoxin II {Clostridium acidurici [TaxId: 1556]	97.98
d1jb0c_	80	Photosystem I iron-sulfur protein PsaC {Synechococ	97.98
d1frra_	95	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	97.96
d1iuea_	98	2Fe-2S ferredoxin {Malaria parasite (Plasmodium fa	97.94
d1xera_	103	Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}	97.93
d1frda_	98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	97.92
d2piaa3	98	Phthalate dioxygenase reductase, C-terminal domain	97.89
d1jq4a_	98	Methane monooxygenase reductase N-terminal domain	97.87
d1rgva_	80	Ferredoxin II {Thauera aromatica [TaxId: 59405]}	97.74
d1blua_	80	Ferredoxin II {Chromatium vinosum [TaxId: 1049]}	97.74
d1wria_	93	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	97.72
d1bc6a_	77	Ferredoxin {Bacillus schlegelii [TaxId: 1484]}	97.72
d1h98a_	77	Ferredoxin {Thermus thermophilus [TaxId: 274]}	97.55
d1l5pa_	93	2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5	97.53
d1doia_	128	2Fe-2S ferredoxin {Archaeon Haloarcula marismortui	97.48
d1gtea5	173	Dihydropyrimidine dehydrogenase, C-terminal domain	97.48
d1sj1a_	66	Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI	97.42
d1e9ma_	106	2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredo	97.4
d1i7ha_	109	Adrenodoxin-like ferredoxin {Escherichia coli [Tax	97.37
d7fd1a_	106	Ferredoxin {Azotobacter vinelandii [TaxId: 354]}	97.35
d1vjwa_	59	Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	97.26
d1fxra_	64	Ferredoxin I {Sulfate-reducing bacteria (Desulfovi	97.26
d2bt6a1	104	Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}	97.17
d1jnrb_	149	Adenylylsulfate reductase B subunit {Archaeon Arch	97.0
d1fxda_	58	Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}	96.97
d1xlqa1	106	2Fe-2S ferredoxin {Pseudomonas putida, putidaredox	96.52
d1b9ra_	105	2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [T	96.47
d1kqfb1	244	Formate dehydrogenase N, iron-sulfur (beta) subuni	96.28
d1vlfn2	195	Transhydroxylase beta subunit, BthL, N-terminal do	96.07
d1iqza_	81	Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1	95.78
d3c7bb1	65	DsrB insert domain {Archaeoglobus fulgidus [TaxId:	95.7
d1y5ib1	509	Respiratory nitrate reductase 1 beta chain {Escher	95.58
d1kqfb1	244	Formate dehydrogenase N, iron-sulfur (beta) subuni	94.24
d1h0hb_	214	Tungsten containing formate dehydrogenase, small s	94.2
d3c7bb1	65	DsrB insert domain {Archaeoglobus fulgidus [TaxId:	92.82
d1y5ib1	509	Respiratory nitrate reductase 1 beta chain {Escher	92.64
d1blua_	80	Ferredoxin II {Chromatium vinosum [TaxId: 1049]}	92.17
d1rgva_	80	Ferredoxin II {Thauera aromatica [TaxId: 59405]}	91.7
d1hfel2	85	Fe-only hydrogenase larger subunit, N-domain {Desu	91.41
d2fdna_	55	Ferredoxin II {Clostridium acidurici [TaxId: 1556]	91.35
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	91.22
d1dura_	55	Ferredoxin II {Peptostreptococcus asaccharolyticus	91.13
d1jb0c_	80	Photosystem I iron-sulfur protein PsaC {Synechococ	90.41
d7fd1a_	106	Ferredoxin {Azotobacter vinelandii [TaxId: 354]}	89.92
d1xera_	103	Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}	89.78
d1nekb1	132	Succinate dehydogenase {Escherichia coli [TaxId: 5	88.82
d1h98a_	77	Ferredoxin {Thermus thermophilus [TaxId: 274]}	88.82
d2c42a5	117	Pyruvate-ferredoxin oxidoreductase, PFOR, domain V	88.47
d2bs2b1	133	Fumarate reductase {Wolinella succinogenes [TaxId:	88.17
d3c8ya3	83	Fe-only hydrogenase, second domain {Clostridium pa	87.29
d1kf6b1	138	Fumarate reductase {Escherichia coli [TaxId: 562]}	86.67
d1bc6a_	77	Ferredoxin {Bacillus schlegelii [TaxId: 1484]}	86.02
d2fug91	154	NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus	85.89
d1vjwa_	59	Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	85.31
d1gtea1	182	Dihydropyrimidine dehydrogenase, N-terminal domain	84.71
d1fxda_	58	Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}	82.6
d1gtea5	173	Dihydropyrimidine dehydrogenase, C-terminal domain	82.41
d2v4jb1	69	DsrB insert domain {Desulfovibrio vulgaris [TaxId:	81.87
d1sj1a_	66	Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI	81.41
d1jnrb_	149	Adenylylsulfate reductase B subunit {Archaeon Arch	81.19

>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein, N-terminal domain {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Wolinella succinogenes [TaxId: 844]

Probab=100.00  E-value=3.3e-37  Score=243.44  Aligned_cols=105  Identities=32%  Similarity=0.616  Sum_probs=100.0

Q ss_pred             ceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccc
Q 045926           57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKP  136 (302)
Q Consensus        57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~  136 (302)
                      +++++|+||||||+++..+|||++|+|++.+ ++||||||.+|+.++||+|+||.+||+|+||+|+|+|||+++|||+|.
T Consensus         2 ~~~i~l~I~R~~p~~~~~~~~~~~y~v~~~~-~~tvld~L~~Ik~~~D~sl~fr~sCr~giCGsCam~ING~~~lAC~t~   80 (106)
T d2bs2b2           2 GRMLTIRVFKYDPQSAVSKPHFQEYKIEEAP-SMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTL   80 (106)
T ss_dssp             CCEEEEEEEECCTTCTTCCCEEEEEEEECCT-TCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEETTEEEEGGGCB
T ss_pred             CcEEEEEEEEECCCCCCCCceEEEEEecCCC-CCcHHHHHHHHHHhcCCcEEEEeCcCCCCCCcceEEECCccccceeee
Confidence            4789999999999997789999999999987 899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCceEEccCCCchhhhhhhhc
Q 045926          137 IDGDTSKPTIITPLPHMFVIKDLVVD  162 (302)
Q Consensus       137 v~~~~~~~~~Iepl~~~~vikDLvvD  162 (302)
                      +.+..++.++||||++||+|||||||
T Consensus        81 v~~~~~~~i~iePl~~~pVIkDLvVD  106 (106)
T d2bs2b2          81 TKDFEDGVITLLPLPAFKLIKDLSVD  106 (106)
T ss_dssp             GGGCTTSEEEEECCTTSEEEETTEEE
T ss_pred             eeccCCCeEEEEECCCCCccccCCcC
Confidence            99876778999999999999999998

>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.7e-37  Score=241.23  Aligned_cols=103  Identities=33%  Similarity=0.548  Sum_probs=97.8

Q ss_pred             ceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEecccccc
Q 045926           57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKP  136 (302)
Q Consensus        57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~  136 (302)
                      ++.++|+||||||+. +.+|||++|+|++++ ++||||||.+|+.++||+|+||.+|++|+||+|+|+|||+++|||.|+
T Consensus         3 ~~~i~~~i~R~dp~~-~~~~~~~~y~v~~~~-~~tvLd~L~~Ik~~~d~sLsfr~sCr~giCGsCam~ING~~~LAC~t~   80 (105)
T d1kf6b2           3 MKNLKIEVVRYNPEV-DTAPHSAFYEVPYDA-TTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTF   80 (105)
T ss_dssp             CEEEEEEEEECCTTT-CSSCEEEEEEEEECT-TCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEETTEEEEGGGCB
T ss_pred             ccEEEEEEEEECCCC-CCCCeeEEEEEecCC-CCcHHHHHHHHHHhcCCcceEEeccCCCCCCCCeEEECCcccccceeE
Confidence            467999999999998 789999999999988 899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCceEEccCCCchhhhhhhhc
Q 045926          137 IDGDTSKPTIITPLPHMFVIKDLVVD  162 (302)
Q Consensus       137 v~~~~~~~~~Iepl~~~~vikDLvvD  162 (302)
                      +.+. ++.++||||++||+|||||||
T Consensus        81 v~~~-~~~i~iePl~~~pVikDLvVD  105 (105)
T d1kf6b2          81 LRDY-TDGMKVEALANFPIERDLVVD  105 (105)
T ss_dssp             GGGC-TTCEEEECCTTSCEEETTEEC
T ss_pred             eecc-CCCeEEEECCCCCccccCCcC
Confidence            9986 557999999999999999998

>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Succinate dehydogenase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.3e-35  Score=230.12  Aligned_cols=102  Identities=52%  Similarity=0.906  Sum_probs=93.6

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCC-chhHHHHHHHcccccCCCcccccCCCCCccCccEEEECCEEeccccccc
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSEC-GPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKPI  137 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~-g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~v  137 (302)
                      .++|+||||||+. +++|||++|+|++++. ++|+|+||.+|+ ++||+|+||.+||+|+||+|+|+|||+++|||+|++
T Consensus         2 kv~~~I~R~dp~~-~~~~~~~~y~v~~~~~~~~~vl~~L~~i~-e~D~sLsfr~sCr~giCGsCam~ING~~~LAC~t~v   79 (106)
T d1nekb2           2 RLEFSIYRYNPDV-DDAPRMQDYTLEADEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPI   79 (106)
T ss_dssp             CCEEEEEECCTTT-CSSCEEEEEECCCCSSSCCBHHHHHHHHH-HHCTTCCCCCCSSSSCSCTTEEEETTEEEETTSCBT
T ss_pred             eEEEEEEEcCCCC-CCCCEEEEEEEeecCCccHHHHHHHHHHh-ccCCCEEEEcCCCCCCCCcceEEEcCccccchheeh
Confidence            4799999999987 7899999999998762 479999999998 569999999999999999999999999999999999


Q ss_pred             cCC--CCCceEEccCCCchhhhhhhhc
Q 045926          138 DGD--TSKPTIITPLPHMFVIKDLVVD  162 (302)
Q Consensus       138 ~~~--~~~~~~Iepl~~~~vikDLvvD  162 (302)
                      .+.  .+++++||||++||++||||||
T Consensus        80 ~~~~~~~~~i~IePL~~~pvikDLvVD  106 (106)
T d1nekb2          80 SALNQPGKKIVIRPLPGLPVIRDLVVD  106 (106)
T ss_dssp             TTTCCTTSCEEEECCSSSBEEETTEEC
T ss_pred             hHhhCCCCeEEEEECCCCCccccCCcC
Confidence            874  3578999999999999999998

>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=5.4e-28  Score=197.91  Aligned_cols=131  Identities=50%  Similarity=1.054  Sum_probs=115.0

Q ss_pred             cchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCc
Q 045926          163 LTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSR  242 (302)
Q Consensus       163 ~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~r  242 (302)
                      |++||++|++++||+..+...+..+|.++++++++.+.++..||+||.|+++||++..+++.+.+|+.+..++++..+++
T Consensus         1 m~~f~~~~~~v~P~~~~~~~~~~~~e~~~~~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~~p~~~~~~~~~~~~~~   80 (132)
T d1nekb1           1 MGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSR   80 (132)
T ss_dssp             CHHHHHHHHHTCCSCCCCCCSCCSSSCCCCHHHHHTTTTTSCCCCCCHHHHTCHHHHHCTTTSCCHHHHHHHHHHHTCTT
T ss_pred             CcHHHHHHHhccCcccCCCCCCCccccccCHHHHHHHHhhHHHhHhhhhhhhCccccccCccccchhHHHHHHHHHhccc
Confidence            57899999999999988776666789999999999999999999999999999999877778899999999998888877


Q ss_pred             chhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhcC
Q 045926          243 DELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLSQ  294 (302)
Q Consensus       243 d~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~~  294 (302)
                      +....+++..+.... ++|.|++||+|+++||+||++.++|..||+.+++++
T Consensus        81 ~~~~~~~~~~~~~~~-gi~~C~~C~~C~~vCP~gI~~~~~I~~lR~~~~~r~  131 (132)
T d1nekb1          81 DTETDSRLDGLSDAF-SVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRN  131 (132)
T ss_dssp             CCCHHHHHHTTCSSS-TTTTCCCCCHHHHHCTTCCCHHHHHHHHHHHHHHHC
T ss_pred             ccccccchhhhhccc-hhhhCcCcccccccCcCCCCHHHHHHHHHHHHHHhc
Confidence            766555655444444 899999999999999999999999999999998765

>d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.3e-27  Score=195.91  Aligned_cols=129  Identities=33%  Similarity=0.620  Sum_probs=113.4

Q ss_pred             cchhhhhccccccccccCCCCCCCccccCChhHHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCc
Q 045926          163 LTNFYQQYKSIEPWLKTNMVPKDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSR  242 (302)
Q Consensus       163 ~~~~~~~~~~~~~~l~~~~~~~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~r  242 (302)
                      |++||+++++++||+..+....+..+.++++++...++.+.+||+||.|+++||++.++ ++|+||+++..++++..+++
T Consensus         1 m~~f~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~~~CP~~~~~-~~~~gp~~~~~~~r~~~d~r   79 (138)
T d1kf6b1           1 MTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLN-PEFIGPAAITLAHRYNEDSR   79 (138)
T ss_dssp             CHHHHHHHHHTCCSCCSCCCCGGGCCCCCCHHHHHTTGGGGCCCCCCHHHHHCHHHHHC-TTSCCHHHHHHHHHHHTCTT
T ss_pred             ChHHHHHHHhccceeeCCCCCCCcccccchHHHHhhHHHHHHHHHhChhhccCccchhh-hhhhhHHHHHHHHHhccCcc
Confidence            57899999999999987654434467889999999999999999999999999998764 57999999999999999998


Q ss_pred             chhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhc
Q 045926          243 DELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLS  293 (302)
Q Consensus       243 d~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~  293 (302)
                      +....+++..+.++. ++|.|++||+|+++||+||++.++|.++|+.+++.
T Consensus        80 d~~~~~rl~~l~~~~-g~~~C~~C~~C~~~CP~gI~~~~~I~~lr~~~~k~  129 (138)
T d1kf6b1          80 DHGKKERMAQLNSQN-GVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKD  129 (138)
T ss_dssp             CCCTHHHHHHHHSTT-TGGGCCCCCHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHhhccc-ccccCchhCcccccCCCCCCHHHHHHHHHHHHHHH
Confidence            887778887776555 89999999999999999999999999999988764

>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.88  E-value=1.1e-23  Score=171.84  Aligned_cols=128  Identities=26%  Similarity=0.519  Sum_probs=105.0

Q ss_pred             hhhhhccccccccccCCCC-CCCccccCChhHHhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcc
Q 045926          165 NFYQQYKSIEPWLKTNMVP-KDGREYRQSPADRKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRD  243 (302)
Q Consensus       165 ~~~~~~~~~~~~l~~~~~~-~~~~e~~~s~~~~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd  243 (302)
                      -|++.+++++||+...... +...+.++++++.+.++++.+||+||+|+.+||++... +.+++|+.+..+.++..++++
T Consensus         4 ~~~~~~~~~~~wi~~~~~~~~~~~e~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~~~-~~~~~~~~~~~~~~~~~~~~~   82 (133)
T d2bs2b1           4 WFNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMR-EDFVGAAGLNRVVRFMIDPHD   82 (133)
T ss_dssp             HHHHHHHHTTCSCCCSSCCCTTSCCCCCCHHHHHHHHHHHTCCCCCHHHHTCHHHHHC-TTCCHHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHhhcccccCCCCCCCChhhccCCHHHHHHHHhHHHHhhhhhHHHhCCccccC-CCccchHHHHHHHHHhhcchh
Confidence            4677889999999765433 33456788999999999999999999999999998854 578999999999888888876


Q ss_pred             hhHHHHHHHhhhcccccccCcccccccccCCCCCCHHHHHHHHHHHHhhc
Q 045926          244 ELTEERLQALTEDERKLYRCRAIKNCTATCPKGLDPADAIHKMKTKHMLS  293 (302)
Q Consensus       244 ~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~~  293 (302)
                      ....++...+....+++|.|++||+|+++||+||++.++|..||+.+++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~Ct~Cg~C~~vCP~gI~~~~~I~~lRr~lv~~  132 (133)
T d2bs2b1          83 ERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRKMVSV  132 (133)
T ss_dssp             CCCHHHHHHHHCSTTTGGGCCCCCHHHHHCTTCCCHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHhhccccchhChhhCCCcccCcCCCChHHHHHHHHHHHHhc
Confidence            65555443332223388999999999999999999999999999999875

>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase, N-terminal domain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=99.41  E-value=3.1e-14  Score=114.34  Aligned_cols=65  Identities=23%  Similarity=0.384  Sum_probs=56.5

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCC--CCCccCccEEEECCE-Eeccccc
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSC--REGICGSCAMNIGGT-NTVACLK  135 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C--~~g~CG~C~V~VnG~-~~laC~t  135 (302)
                      |+||.|++              .++++++ |+|||+|++++| +++|+|||+.+.  ..|.|+.|.|+|+|+ .+.||+|
T Consensus         1 Mvti~IdG--------------~~v~~~~-G~til~aa~~~g-i~IP~lC~~~~l~~~~G~Cr~C~Vev~G~~~v~AC~t   64 (126)
T d3c8ya2           1 MKTIIING--------------VQFNTDE-DTTILKFARDNN-IDISALCFLNNCNNDINKCEICTVEVEGTGLVTACDT   64 (126)
T ss_dssp             CEEEEETT--------------EEEEECC-CCBHHHHHHHTT-CCCCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGC
T ss_pred             CcEEEECC--------------EEEEeCC-CChHHHHHHHcC-CccchhhhccCCCCCCccceeEEEEEccCcccccccc
Confidence            68999988              4455667 999999999998 579999999886  359999999999996 6789999


Q ss_pred             cccC
Q 045926          136 PIDG  139 (302)
Q Consensus       136 ~v~~  139 (302)
                      ++.+
T Consensus        65 ~v~~   68 (126)
T d3c8ya2          65 LIED   68 (126)
T ss_dssp             BCCT
T ss_pred             CCCC
Confidence            9998

>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain {Thauera aromatica [TaxId: 59405]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain
species: Thauera aromatica [TaxId: 59405]

Probab=99.39  E-value=2.2e-13  Score=101.14  Aligned_cols=77  Identities=17%  Similarity=0.366  Sum_probs=63.2

Q ss_pred             ceeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEECCEEeccccc
Q 045926           57 KVMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLK  135 (302)
Q Consensus        57 ~~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t  135 (302)
                      +.+++|+|+.            +.+++++++ +++|||+||+ ++.     ...+.+|..|.||+|+|.|||+++.||.+
T Consensus         2 ~~~i~~~lNG------------~~~~~~v~~-~~~Ll~~LR~~lgl-----tgtK~gC~~G~CGACTVlvdG~~v~sC~~   63 (81)
T d1rm6c2           2 KNILRLTLNG------------RAREDLVPD-NMLLLDYLRETVGL-----TGTKQGCDGGECGACTVLVDDRPRLACST   63 (81)
T ss_dssp             EEEEEEEETT------------EEEEEEEET-TCBHHHHHHHTTCC-----TTSCCCSSSSSSCTTEEEETTEEEEGGGS
T ss_pred             CceEEEEECC------------EEEEEecCC-CCCHHHHHHHhhCC-----cccccCCccccCCccEEeECCceEeehHh
Confidence            3578899888            567788877 8999999986 442     35688999999999999999999999999


Q ss_pred             cccCCCCC-ceEEccCC
Q 045926          136 PIDGDTSK-PTIITPLP  151 (302)
Q Consensus       136 ~v~~~~~~-~~~Iepl~  151 (302)
                      ++....+. ..|||.|.
T Consensus        64 ~~~~~~g~~I~TvEgL~   80 (81)
T d1rm6c2          64 LAHQVAGKKVETVESLA   80 (81)
T ss_dssp             BGGGGTTSEEECGGGSS
T ss_pred             hHHHcCCCEEEEeCcCc
Confidence            99876554 45788764

>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit QorS, N-domain {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Quinoline 2-oxidoreductase small subunit QorS, N-domain
species: Pseudomonas putida [TaxId: 303]

Probab=99.39  E-value=3.1e-13  Score=100.27  Aligned_cols=76  Identities=20%  Similarity=0.342  Sum_probs=62.9

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEECCEEecccccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKP  136 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~  136 (302)
                      ..++|.|+.            +.|++++++ +++||++||+ ++.     ...+.+|..|.||+|+|.|||+++.||.++
T Consensus         4 ~~i~~~vNG------------~~~~~~~~~-~~~Ll~~LR~~l~l-----tg~K~gC~~G~CGACtVlvdG~~v~sCl~~   65 (81)
T d1t3qa2           4 MRISATING------------KPRVFYVEP-RMHLADALREVVGL-----TGTKIGCEQGVCGSCTILIDGAPMRSCLTL   65 (81)
T ss_dssp             EEEEEEETT------------EEEEEEECT-TSBHHHHHHHTTCC-----TTSCCSCSSSSSCTTEEEETTEEEEGGGSB
T ss_pred             EEEEEEECC------------EEEEEecCC-CCCHHHHHhhhhCC-----cccccCCCCcccCeeEEEECCCEEeehhhe
Confidence            468888888            678899988 8999999996 342     257888999999999999999999999999


Q ss_pred             ccCCCC-CceEEccCC
Q 045926          137 IDGDTS-KPTIITPLP  151 (302)
Q Consensus       137 v~~~~~-~~~~Iepl~  151 (302)
                      +....+ +..|||.|.
T Consensus        66 ~~~~~g~~V~TiEGLa   81 (81)
T d1t3qa2          66 AVQAEGCSIETVEGLS   81 (81)
T ss_dssp             GGGGTTCEEECGGGTC
T ss_pred             HhhcCCCEEEEeccCC
Confidence            987655 456788763

>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
species: Hydrogenophaga pseudoflava [TaxId: 47421]

Probab=99.38  E-value=3.7e-13  Score=99.37  Aligned_cols=75  Identities=12%  Similarity=0.305  Sum_probs=63.4

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEECCEEecccccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKP  136 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~  136 (302)
                      ++++|+|+.            +.+++++++ +++|||+||+ ++.     ...+.+|..|.||+|+|.|||+++.||.++
T Consensus         2 ~~i~~~vNG------------~~~~~~v~~-~~~Ll~~LR~~~gl-----~gtK~GC~~G~CGaCTVlvdg~~v~SCl~~   63 (79)
T d1ffva2           2 KIITVNVNG------------KAQEKAVEP-RTLLIHFLREELNL-----TGAHIGCETSHCGACTVDIDGRSVKSCTHL   63 (79)
T ss_dssp             EEEEEEETT------------EEEEEEECT-TCBHHHHHHHTSCC-----TTSCCCCSSSCSCTTEEEETTEEEEGGGSB
T ss_pred             cEEEEEECC------------EEEEEeCCC-CCCHHHHHhhhcCC-----cccccCCccccccccEEecCCcEEEEehhh
Confidence            679999998            668899888 8999999996 342     357889999999999999999999999999


Q ss_pred             ccCCCCC-ceEEccC
Q 045926          137 IDGDTSK-PTIITPL  150 (302)
Q Consensus       137 v~~~~~~-~~~Iepl  150 (302)
                      +....+. ..|||.|
T Consensus        64 ~~~~~g~~I~TiEGL   78 (79)
T d1ffva2          64 AVQCDGSEVLTVEGL   78 (79)
T ss_dssp             GGGGTTCEEECGGGT
T ss_pred             HHHcCCCEEEEeccC
Confidence            9886554 4478865

>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Aldehyde oxidoreductase, N-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=99.35  E-value=5.1e-13  Score=98.76  Aligned_cols=75  Identities=17%  Similarity=0.391  Sum_probs=60.3

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEECCEEecccccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKP  136 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~  136 (302)
                      .+++|.|+.            +++++++++ +++|||+||+ ++.     .+.+.+|.+|.||+|+|.|||+++.||.++
T Consensus         2 ~~~~~~lNG------------~~~~~~v~~-~~~Lld~LR~~lgl-----tg~K~gC~~G~CGACtVlvdG~~v~SCl~~   63 (80)
T d1vlba2           2 IQKVITVNG------------IEQNLFVDA-EALLSDVLRQQLGL-----TGVKVGCEQGQCGACSVILDGKVVRACVTK   63 (80)
T ss_dssp             EEEEEEETT------------EEEEEEECT-TSBHHHHHHHTTCC-----TTSCCSSSSSSSCTTEEEETTEEEEGGGCB
T ss_pred             ceEEEEECC------------EEEEEecCC-CCCHHHHHhHhhCC-----cccccCcCcCCCCeeEEEECCcEEechhhh
Confidence            456788887            668888888 8999999996 442     257889999999999999999999999998


Q ss_pred             ccCC-CCC-ceEEccC
Q 045926          137 IDGD-TSK-PTIITPL  150 (302)
Q Consensus       137 v~~~-~~~-~~~Iepl  150 (302)
                      +... ++. ..|||.|
T Consensus        64 ~~~~adG~~I~TiEGL   79 (80)
T d1vlba2          64 MKRVADGAQITTIEGV   79 (80)
T ss_dssp             GGGSCTTCEEECHHHH
T ss_pred             HHHHcCCCEEEEcCcC
Confidence            8764 454 4477754

>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Aldehyde oxidoreductase, N-terminal domain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=99.33  E-value=5.7e-13  Score=98.54  Aligned_cols=75  Identities=19%  Similarity=0.406  Sum_probs=60.2

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEECCEEecccccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKP  136 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~  136 (302)
                      ..++|.|+.            +.+++++++ +++|||+||+ ++.     ...+.+|..|.||+|+|.|||+++.||.++
T Consensus         2 ~~~~~~vNG------------~~~~~~v~p-~~~Ll~~LR~~~gl-----tgtK~GC~~G~CGACtV~vdG~~v~SC~~~   63 (80)
T d1dgja2           2 ETKTLIVNG------------MARRLLVSP-NDLLVDVLRSQLQL-----TSVKVGCGKGQCGACTVILDGKVVRACIIK   63 (80)
T ss_dssp             EEEECEETT------------BCCEEEECT-TCBHHHHHHHTTCC-----TTSCCSSSSSSSCTTEEEETTEEEEGGGCB
T ss_pred             ceEEEEECC------------EEEEEEcCC-CCCHHHHHhhhhCC-----ceeccCCCCCCCCeeEEEECCeEEechhhh
Confidence            467888888            447788887 8999999996 342     257889999999999999999999999998


Q ss_pred             ccCC-CCC-ceEEccC
Q 045926          137 IDGD-TSK-PTIITPL  150 (302)
Q Consensus       137 v~~~-~~~-~~~Iepl  150 (302)
                      +... ++. ..|||.|
T Consensus        64 la~~a~G~~I~TiEGL   79 (80)
T d1dgja2          64 MSRVAENASVTTLEGI   79 (80)
T ss_dssp             GGGSCTTCEEECGGGT
T ss_pred             HHHHcCCCEEEEcCcC
Confidence            7653 454 5588865

>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
species: Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]

Probab=99.31  E-value=1.6e-12  Score=95.90  Aligned_cols=75  Identities=13%  Similarity=0.299  Sum_probs=62.5

Q ss_pred             eeEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEECCEEecccccc
Q 045926           58 VMKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIGGTNTVACLKP  136 (302)
Q Consensus        58 ~~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~VnG~~~laC~t~  136 (302)
                      ..++|.|+.            +++++++++ +++|||+||+ ++.     .+.+.+|..|.||+|+|.|||+++.||.++
T Consensus         2 ~~i~~~lNG------------~~~~~~v~p-~~~Ll~~LR~~~~l-----tgtK~GC~~G~CGaCTVlvdg~~v~SCl~~   63 (79)
T d1n62a2           2 AHIELTING------------HPVEALVEP-RTLLIHFIREQQNL-----TGAHIGCDTSHCGACTVDLDGMSVKSCTMF   63 (79)
T ss_dssp             EEEEEEETT------------EEEEEEECT-TCBHHHHHHHTSCC-----TTSCCCCSSSCSCTTEEEETTEEEEGGGSB
T ss_pred             ceEEEEECC------------EEEEEecCC-CCcHHHHHhhhcCC-----cccccCCccccccccEEEeCCcEEeeeheE
Confidence            468888988            668888888 8999999996 342     357889999999999999999999999999


Q ss_pred             ccCCCCCc-eEEccC
Q 045926          137 IDGDTSKP-TIITPL  150 (302)
Q Consensus       137 v~~~~~~~-~~Iepl  150 (302)
                      +...++.. .|||.|
T Consensus        64 ~~~~~g~~I~TvEGL   78 (79)
T d1n62a2          64 AVQANGASITTIEGM   78 (79)
T ss_dssp             GGGGTTCEEECGGGS
T ss_pred             HHhcCCCEEEEeCcC
Confidence            98765544 478865

>d1jroa2 d.15.4.2 (A:1-84) Xanthine dehydrogenase chain A, N-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Xanthine dehydrogenase chain A, N-terminal domain
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.09  E-value=6.6e-11  Score=88.08  Aligned_cols=76  Identities=21%  Similarity=0.360  Sum_probs=61.9

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEEC----CEEecccc
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIG----GTNTVACL  134 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~Vn----G~~~laC~  134 (302)
                      .++|.|+.            +.++++..+.+++||++|++.+.     -..+.+|..|.||+|+|.||    |+++.||.
T Consensus         2 ~i~f~vNG------------~~~~~~~~~~~~~Ll~~LR~~~l-----tgtK~GC~~G~CGACtVlvd~~~~g~~v~SCl   64 (84)
T d1jroa2           2 EIAFLLNG------------ETRRVRIEDPTQSLLELLRAEGL-----TGTKEGCNEGDCGACTVMIRDAAGSRAVNACL   64 (84)
T ss_dssp             EEEEEETT------------EEEEEECSCTTCBHHHHHHHTTC-----TTSCCSCSSSSSCTTEEEEEETTEEEEEETTT
T ss_pred             EEEEEECC------------EEEEEEcCCCCCcHHHHHHHCCC-----ccCccCcCCcccceeEEEEEeCCCCEEEecHH
Confidence            47788888            67888875447999999998642     35688999999999999999    89999999


Q ss_pred             ccccCCCCC-ceEEccCC
Q 045926          135 KPIDGDTSK-PTIITPLP  151 (302)
Q Consensus       135 t~v~~~~~~-~~~Iepl~  151 (302)
                      +++....+. ..|||.|.
T Consensus        65 ~~~~~~~g~~v~TvEGL~   82 (84)
T d1jroa2          65 MMLPQIAGKALRTIEGIA   82 (84)
T ss_dssp             CBGGGGTTCEEECGGGSS
T ss_pred             HHHHHhCCCEEEEeCccc
Confidence            999886554 45788775

>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.95  E-value=3e-10  Score=86.08  Aligned_cols=65  Identities=18%  Similarity=0.376  Sum_probs=50.7

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEecCCCchhHHHHHHHcccccCCCcccccCC-CCCccCccEEEEC-C---------
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSC-REGICGSCAMNIG-G---------  127 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C-~~g~CG~C~V~Vn-G---------  127 (302)
                      |++|+|+.            +  +|++++ |.|||||+++.+ ..+|++|+..+| +.|.||+|.|+|. |         
T Consensus         1 Mv~i~i~g------------~--~~~v~~-g~tll~a~~~~g-i~ip~~C~~~~~~~~G~C~~C~V~v~~g~~~~~~~~~   64 (95)
T d2fug33           1 MVRVKVND------------R--IVEVPP-GTSVMDAVFHAG-YDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPL   64 (95)
T ss_dssp             CEEEECSS------------C--EEEECT-TCBHHHHHHHHT-CCCCCCSCCTTSCCCSCSTTSEEEEEC----------
T ss_pred             CcEEEECC------------E--EEEECC-CCcHHHHHHhcC-CCCCccccCCCcCcccccCCCEEEEccCccccCcccc
Confidence            57777754            2  355667 999999999998 469999988875 5799999999994 3         


Q ss_pred             -------------EEeccccccccC
Q 045926          128 -------------TNTVACLKPIDG  139 (302)
Q Consensus       128 -------------~~~laC~t~v~~  139 (302)
                                   ..+|||+|++.+
T Consensus        65 ~~~~~~~~~~~~~~~rlaCqt~v~~   89 (95)
T d2fug33          65 LNEKGEPEIQWQPKLAASCVTAVAD   89 (95)
T ss_dssp             --------CCBCSSCEETTTCBCCT
T ss_pred             hhhhhhhHhhcCCCccCcCcCCCCC
Confidence                         235799999875

>d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Xanthine oxidase, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.88  E-value=1.2e-09  Score=82.25  Aligned_cols=74  Identities=20%  Similarity=0.324  Sum_probs=57.5

Q ss_pred             eEEEEEEecCCCCCCCCCceeEEEEe-cCCCchhHHHHHHH-cccccCCCcccccCCCCCccCccEEEECCE--------
Q 045926           59 MKEFRIYRWNPDRPDSKPFLQSYHVD-LSECGPMVLDALQK-IKAETDSSLSYRRSCREGICGSCAMNIGGT--------  128 (302)
Q Consensus        59 ~~~~~I~r~~p~~~~~~~~~~~y~v~-~~~~g~tvLdal~~-i~~~~dptL~~~~~C~~g~CG~C~V~VnG~--------  128 (302)
                      .++|.|+.            +.+.+. +++ ++||||+||+ ++.     -..+.+|.+|.||+|+|.|||.        
T Consensus         3 ~i~F~lNG------------~~~~~~~~~p-~~tLl~~LR~~~~l-----tGtK~GC~~G~CGACTVlv~~~~~~~~~~~   64 (90)
T d1v97a2           3 ELVFFVNG------------KKVVEKNADP-ETTLLAYLRRKLGL-----RGTKLGCGEGGCGACTVMLSKYDRLQDKII   64 (90)
T ss_dssp             CEEEEETT------------EEEEETTCCT-TCBHHHHHHHTSCC-----TTSCCSCSSSSSCTTEEEEEEEETTTTEEE
T ss_pred             eEEEEECC------------EEEEEccCCC-CCCHHHHHHhhcCC-----CccccCcCCcccceeEEEEccccccCCcee
Confidence            47788887            456553 556 7999999996 343     2577899999999999999985        


Q ss_pred             --EeccccccccCCCCC-ceEEccC
Q 045926          129 --NTVACLKPIDGDTSK-PTIITPL  150 (302)
Q Consensus       129 --~~laC~t~v~~~~~~-~~~Iepl  150 (302)
                        ++.||.+++....+. .+|||.|
T Consensus        65 ~~~vnSCl~~~~~~~g~~v~TiEGL   89 (90)
T d1v97a2          65 HFSANACLAPICTLHHVAVTTVEGI   89 (90)
T ss_dssp             EEEEETTTCBGGGCTTCEEECGGGT
T ss_pred             eeeeeehHhhHHHcCCCEEEEeCcC
Confidence              677999999887654 4578865

>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: NADH-quinone oxidoreductase chain 3, Nqo3, domain 2
species: Thermus thermophilus [TaxId: 274]

Probab=98.43  E-value=2e-09  Score=88.54  Aligned_cols=64  Identities=17%  Similarity=0.080  Sum_probs=40.7

Q ss_pred             HhhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC
Q 045926          196 RKKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK  275 (302)
Q Consensus       196 ~~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~  275 (302)
                      +.+..+.++||+||+|+.+|+.++...  .++           ..+|...  .++   . ..+....|++||+|+.+||+
T Consensus        77 p~i~~d~~kCI~C~rCvr~C~ev~g~~--~l~-----------~~~rG~~--~~i---~-~~~~~~~c~~cG~Cv~vCPt  137 (151)
T d2fug34          77 PFVILDRERCIHCKRCVRYFEEVPGDE--VLD-----------FIERGVH--TFI---G-TMDFGLPSGFSGNITDICPV  137 (151)
T ss_dssp             SSSCEECSCCCCCCHHHHHHHHTTCCC--CCC-----------CBSCGGG--CBC---C-CSSTTCCSSCCTHHHHHCSS
T ss_pred             CeEEecCCCCCcCchHHhhhhhccCCc--eEE-----------Eeccccc--eEE---c-cCCCCCCChhhcCHHhcCcc
Confidence            467788999999999999998655211  111           1111110  011   1 11123479999999999999


Q ss_pred             CCC
Q 045926          276 GLD  278 (302)
Q Consensus       276 gI~  278 (302)
                      |+-
T Consensus       138 GAL  140 (151)
T d2fug34         138 GAL  140 (151)
T ss_dssp             SSS
T ss_pred             ccc
Confidence            985

>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase, second domain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=98.31  E-value=9.6e-10  Score=81.14  Aligned_cols=67  Identities=13%  Similarity=0.163  Sum_probs=38.4

Q ss_pred             hhccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCC
Q 045926          197 KKLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKG  276 (302)
Q Consensus       197 ~~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~g  276 (302)
                      .+..+.++||+||+|+.+||.......  .+..     .+ ....+...      ...... ....|+.||+|+++||+|
T Consensus        13 ~i~iD~~kCI~C~~Cv~aCp~~~~~~~--~~~~-----~~-~~~~~~~~------~~~~~~-~~~~C~~Cg~Cv~vCP~g   77 (83)
T d3c8ya3          13 SLTVDRTKCLLCGRCVNACGKNTETYA--MKFL-----NK-NGKTIIGA------EDEKCF-DDTNCLLCGQCIIACPVA   77 (83)
T ss_dssp             SEEEEGGGCCCCCHHHHHHHHHHSCCC--SEEE-----EE-TTEEEEES------GGGCCG-GGSSCCCCCHHHHHCSST
T ss_pred             CEEEchhHCCCCchHHHhhcccccccc--eeee-----cc-ccceEEcc------cccccc-cccccccCCHHHhhCCCC
Confidence            456788999999999999996442110  0000     00 00000000      000111 234799999999999999


Q ss_pred             CC
Q 045926          277 LD  278 (302)
Q Consensus       277 I~  278 (302)
                      +-
T Consensus        78 Ai   79 (83)
T d3c8ya3          78 AL   79 (83)
T ss_dssp             TE
T ss_pred             cc
Confidence            73

>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

Probab=98.28  E-value=9.8e-07  Score=66.83  Aligned_cols=41  Identities=24%  Similarity=0.537  Sum_probs=33.1

Q ss_pred             eEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEEC
Q 045926           79 QSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIG  126 (302)
Q Consensus        79 ~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~Vn  126 (302)
                      +.++|++++ |.|||||+.+.|..      ...+|+.|+||+|.+.|.
T Consensus        14 ~~~~~~v~~-~~slL~a~~~~Gi~------ip~~C~~G~CgtC~~~v~   54 (98)
T d1czpa_          14 TKHEIEVPD-DEYILDAAEEQGYD------LPFSCRAGACSTCAGKLV   54 (98)
T ss_dssp             EEEEEEEET-TSCHHHHHHHTTCC------CCCSSSSSSSSTTEEEEE
T ss_pred             CEEEEEeCc-CChHHHHHHHcCCC------eEEecCCcccCCCeeEEe
Confidence            346677777 89999999998842      456799999999999874

>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase larger subunit, N-domain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=98.27  E-value=4.1e-08  Score=72.69  Aligned_cols=51  Identities=20%  Similarity=0.388  Sum_probs=34.9

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .+.++||+||.|+.+||......                ..+...        .  .. ....|++||.|+.+||+++
T Consensus        29 id~~~Ci~C~~Cv~~Cp~~ai~~----------------~~~~~~--------~--~~-~~~~C~~Cg~C~~~CP~~A   79 (85)
T d1hfel2          29 IDEAKCIGCDTCSQYCPTAAIFG----------------EMGEPH--------S--IP-HIEACINCGQCLTHCPENA   79 (85)
T ss_dssp             ECTTTCCCCCHHHHHCTTCCCBC----------------CTTSCC--------B--CC-CGGGCCCCCTTGGGCTTCC
T ss_pred             EcHHHCCCchhHHHHCCccCEEe----------------ecCCce--------E--eC-ChhHCCCcChhhhhCCccc
Confidence            36789999999999999753210                000000        0  01 3457999999999999987

>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain V
species: Desulfovibrio africanus [TaxId: 873]

Probab=98.26  E-value=2.4e-09  Score=84.01  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=17.8

Q ss_pred             ccccccCcccCcccCCCCCcc
Q 045926          199 LDGLYECILCACCTTSCPSYW  219 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~  219 (302)
                      .++.++||.||.|+.+||...
T Consensus        15 v~d~~~Ci~Cg~C~~vCP~~~   35 (117)
T d2c42a5          15 QWVPENCIQCNQCAFVCPHSA   35 (117)
T ss_dssp             EECTTTCCCCCHHHHHCSSCC
T ss_pred             EeCchhcCCCcChhhhCchhh
Confidence            456789999999999999654

>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.11  E-value=2.1e-06  Score=64.77  Aligned_cols=40  Identities=30%  Similarity=0.568  Sum_probs=32.0

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GG  127 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG  127 (302)
                      .+|++++ |.|||||+++.|..      ...+|+.|.||+|.|.| +|
T Consensus        14 ~~~~~~~-g~tlL~a~~~~Gi~------i~~~C~~G~CgtC~~~v~~G   54 (97)
T d1a70a_          14 VEFQCPD-DVYILDAAEEEGID------LPYSCRAGSCSSCAGKLKTG   54 (97)
T ss_dssp             EEEEEET-TSCHHHHHHHTTCC------CCCSSSSSCSSTTEEEEEES
T ss_pred             EEEEeCC-CchHHHHHHHcCCC------eeeCCCcEEcCCCEeEeecC
Confidence            5566667 89999999998742      34579999999999966 56

>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Peptostreptococcus asaccharolyticus [TaxId: 1258]

Probab=98.09  E-value=5.3e-07  Score=61.10  Aligned_cols=46  Identities=26%  Similarity=0.608  Sum_probs=33.1

Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .++|+.||.|+.+||+.....                 ...          .  .. ....|+.||.|+.+||+++
T Consensus         5 ~d~C~~C~~C~~~CP~~ai~~-----------------~~~----------~--~i-~~~~C~~Cg~C~~~CP~~A   50 (55)
T d1dura_           5 NDSCIACGACKPECPVNCIQE-----------------GSI----------Y--AI-DADSCIDCGSCASVCPVGA   50 (55)
T ss_dssp             CTTCCCCCCSGGGCTTCCEEC-----------------SSS----------C--EE-CTTTCCCCCHHHHHCTTCC
T ss_pred             CccCcChhHHHhhCCcCeEeC-----------------Cce----------e--EE-ChhHCcCCCChhhhCCcCc
Confidence            358999999999999754210                 000          0  11 3357999999999999986

>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Benzoate dioxygenase reductase, N-terminal domain
species: Acinetobacter sp. [TaxId: 472]

Probab=98.04  E-value=2.9e-06  Score=64.76  Aligned_cols=41  Identities=27%  Similarity=0.573  Sum_probs=33.9

Q ss_pred             EEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CC
Q 045926           80 SYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GG  127 (302)
Q Consensus        80 ~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG  127 (302)
                      .+.|++.+ |.|||||+++.|..      ...+|+.|.||+|.|.| .|
T Consensus        14 ~~~~~~~~-getlL~aa~~~gi~------i~~~C~~G~CgtC~v~v~~G   55 (104)
T d1krha3          14 TRFICIAQ-GETLSDAAYRQQIN------IPMDCREGECGTCRAFCESG   55 (104)
T ss_dssp             EEEEEECT-TCCHHHHHHHTTCC------CSCSCSSSSSCTTEEEEEEC
T ss_pred             EEEEEeCC-CCcHHHHHHHcCCC------CccccCCcccCCCEEEeeeC
Confidence            46788887 99999999998742      45579999999999988 45

>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: NADH-quinone oxidoreductase chain 9, Nqo9
species: Thermus thermophilus [TaxId: 274]

Probab=98.01  E-value=2.4e-08  Score=81.92  Aligned_cols=65  Identities=25%  Similarity=0.502  Sum_probs=35.6

Q ss_pred             ccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          201 GLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      +..+||.||.|+.+||..........+..    ... ...+....       ..-.. ....|++||.|+++||+++-
T Consensus        24 ~~ekCI~C~~C~~~CP~~~i~~~~~~~~~----~~~-~~~~~~~~-------~~~~i-d~~~C~~CG~Cve~CPt~AI   88 (154)
T d2fug91          24 GLEKCIGCSLCAAACPAYAIYVEPAENDP----ENP-VSAGERYA-------KVYEI-NMLRCIFCGLCEEACPTGAI   88 (154)
T ss_dssp             SCBSCCCCTHHHHHCSSCCEEEEEEECCS----SSC-SBSSSEEE-------EEEEE-ETTTCCCCTHHHHHCSSSCE
T ss_pred             CcccCcCCCcHHhhcCCcceecccccccc----ccc-cccccccc-------eeEEe-ccccCCCCCCchhhCCCCeE
Confidence            56789999999999997542100000000    000 00000000       00011 34589999999999999963

>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Chlorella fusca [TaxId: 3073]

Probab=98.00  E-value=4e-06  Score=62.82  Aligned_cols=40  Identities=33%  Similarity=0.648  Sum_probs=32.8

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GG  127 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG  127 (302)
                      .+|++++ |.|||||+++.|..      ...+|+.|.||+|.+.| +|
T Consensus        12 ~~~~~~~-~~slL~aa~~~Gi~------i~~~C~~G~CgtC~~~v~~G   52 (94)
T d1awda_          12 ETIECPE-DTYILDAAEEAGLD------LPYSCRAGACSSCAGKVESG   52 (94)
T ss_dssp             EEEECCT-TSCHHHHHHHTTCC------CCCSSSSSSSSTTEEEEEES
T ss_pred             EEEEeCC-CCcHHHHHHHcCCc------EEEecCCCccCCceEEEeec
Confidence            5677777 89999999998843      45679999999999976 45

>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Clostridium acidurici [TaxId: 1556]

Probab=97.98  E-value=9e-07  Score=59.92  Aligned_cols=48  Identities=25%  Similarity=0.540  Sum_probs=33.7

Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      .++|+.||.|+.+||+.....                .+..          .  .. ....|+.||.|+.+||+++-
T Consensus         5 ~e~C~~Cg~C~~~Cp~~ai~~----------------~~~~----------~--~i-~~~~C~~Cg~C~~~CP~~AI   52 (55)
T d2fdna_           5 NEACISCGACEPECPVNAISS----------------GDDR----------Y--VI-DADTCIDCGACAGVCPVDAP   52 (55)
T ss_dssp             CTTCCCCCTTGGGCTTCCEEC----------------CSSS----------C--EE-CTTTCCCCCHHHHTCTTCCE
T ss_pred             CcCCCChhhHHHhcCccceEc----------------CCce----------E--EE-CHHHCCCCCChhcccCCCCc
Confidence            358999999999999754211                0110          0  01 34579999999999999873

>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Photosystem I iron-sulfur protein PsaC
species: Synechococcus elongatus [TaxId: 32046]

Probab=97.98  E-value=3.5e-08  Score=72.14  Aligned_cols=58  Identities=19%  Similarity=0.395  Sum_probs=35.5

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ...++||.||.|+.+||.......               .......     ....... ....|+.||.|+.+||+++-
T Consensus         5 ~~~d~Ci~Cg~Cv~~Cp~~~i~~~---------------~~~~~~~-----~~~~~~~-~~~~C~~Cg~C~~~CP~~Ai   62 (80)
T d1jb0c_           5 KIYDTCIGCTQCVRACPTDVLEMV---------------PWDGCKA-----GQIASSP-RTEDCVGCKRCETACPTDFL   62 (80)
T ss_dssp             EEETTCCCCCHHHHHCTTCCCEEE---------------ECSSSTT-----SEEEECT-TGGGCCCCCHHHHHCCSSSC
T ss_pred             ccCCCCcCccCHHHhCCccceEee---------------ccccccc-----cccceec-chhhCcCCCCccccCCCCCc
Confidence            346789999999999997652100               0000000     0000011 34579999999999999973

>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

Probab=97.96  E-value=5.1e-06  Score=62.35  Aligned_cols=41  Identities=34%  Similarity=0.730  Sum_probs=33.9

Q ss_pred             EEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CC
Q 045926           80 SYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GG  127 (302)
Q Consensus        80 ~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG  127 (302)
                      .++|++++ |.|||||+++.|..      ...+|+.|.||+|.+.| .|
T Consensus        12 ~~~~~~~~-g~slLda~~~~Gi~------ip~~C~~G~CgtC~~~v~~G   53 (95)
T d1frra_          12 EFTLDVPE-GTTILDAAEEAGYD------LPFSCRAGACSSCLGKVVSG   53 (95)
T ss_dssp             EEEEEECT-TCCHHHHHHHTTCC------CCCSSSSSSSSTTEEEEEES
T ss_pred             cEEEEECC-CCcHHHHHHHcCCC------EEeccCCcEeCCCEEEEecc
Confidence            46777877 89999999998842      55679999999999986 56

>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.94  E-value=4.7e-06  Score=62.88  Aligned_cols=41  Identities=32%  Similarity=0.665  Sum_probs=32.7

Q ss_pred             EEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CC
Q 045926           80 SYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GG  127 (302)
Q Consensus        80 ~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG  127 (302)
                      .++|++.+ |.|||||+++.|..      ...+|+.|.||+|.+.| .|
T Consensus        13 ~~~~~~~~-getlLda~~~~gi~------i~~~C~~G~CgtC~~~v~~G   54 (98)
T d1iuea_          13 EKKIECNE-DEYILDASERQNVE------LPYSCRGGSCSTCAAKLVEG   54 (98)
T ss_dssp             EEEEEEET-TSCHHHHHHHTTCC------CCCSSCSSSSSTTEEEEEES
T ss_pred             eEEEEECC-CCcHHHHHHHcCCC------eEEcCCceEcCCCEEEEecC
Confidence            36677777 99999999998842      44579999999998876 45

>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Archaeal ferredoxins
domain: Ferredoxin
species: Archaeon Sulfolobus sp. [TaxId: 2288]

Probab=97.93  E-value=1.1e-07  Score=72.83  Aligned_cols=60  Identities=18%  Similarity=0.311  Sum_probs=36.7

Q ss_pred             hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...+..+||.||.|+.+||+.......  ++.        ......         ..... ....|+.||.|+++||+++
T Consensus        38 ~~iD~~~Ci~Cg~C~~~CP~~ai~~~~--~~~--------~~~~~~---------~~~~i-~~~~C~~Cg~C~~~CP~~A   97 (103)
T d1xera_          38 VGVDFDLCIADGSCINACPVNVFQWYD--TPG--------HPASEK---------KADPV-NEQACIFCMACVNVCPVAA   97 (103)
T ss_dssp             EEEETTTCCCCCHHHHHCTTCCCEEEE--CTT--------CSSCSE---------EEECT-TGGGCCCCCHHHHHCTTCC
T ss_pred             EEECHHHCcCcCcccccCcccceeeec--ccc--------cccccc---------ceeEe-ccccCCCcChHHhhcCccc
Confidence            445778999999999999976421000  000        000000         00011 3458999999999999986

>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

Probab=97.92  E-value=7.4e-06  Score=61.69  Aligned_cols=39  Identities=26%  Similarity=0.514  Sum_probs=31.8

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEEC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIG  126 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~Vn  126 (302)
                      .+|++++ |.||||||++.|..      ...+|+.|.||+|.+.|-
T Consensus        16 ~ti~v~~-g~siLdaa~~~Gi~------i~~~C~~G~CgtC~~~v~   54 (98)
T d1frda_          16 TTIEIDE-ETTILDGAEENGIE------LPFSCHSGSCSSCVGKVV   54 (98)
T ss_dssp             EEEEEET-TSCHHHHHHHTTCC------CCCSSSSSSSSTTEEEEE
T ss_pred             EEEEeCC-CChHHHHHHHcCCC------EEEecCCCeeCCCEEEec
Confidence            5566767 89999999998842      556799999999999773

>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Phthalate dioxygenase reductase, C-terminal domain
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=97.89  E-value=5.2e-06  Score=62.67  Aligned_cols=39  Identities=26%  Similarity=0.674  Sum_probs=31.0

Q ss_pred             EecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE
Q 045926           83 VDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT  128 (302)
Q Consensus        83 v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~  128 (302)
                      |++++ |.|||||+++.|..      ...+|+.|+||+|.|.| .|.
T Consensus        26 ~~v~~-~~slL~aa~~~Gi~------ip~~C~~G~CgtC~~~v~~G~   65 (98)
T d2piaa3          26 FEIPA-NRSILEVLRDANVR------VPSSCESGTCGSCKTALCSGE   65 (98)
T ss_dssp             EEECT-TSCHHHHHHHTTCC------CCCSCSSSSSCTTEEEEEESC
T ss_pred             EEECc-CCcHHHHHHhcCCc------ccccCCccEeCCCEEEEEeec
Confidence            44556 89999999998742      55679999999999975 675

>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Methane monooxygenase reductase N-terminal domain
species: Methylococcus capsulatus [TaxId: 414]

Probab=97.87  E-value=4.9e-06  Score=62.69  Aligned_cols=42  Identities=26%  Similarity=0.430  Sum_probs=35.0

Q ss_pred             eEEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CC
Q 045926           79 QSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GG  127 (302)
Q Consensus        79 ~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG  127 (302)
                      +.++|++++ |.||||||++.|.      .+..+|+.|.||+|.+.| .|
T Consensus        15 ~~~~~~~~~-g~slLdaa~~~Gi------~i~~~C~~G~Cg~C~~~v~~G   57 (98)
T d1jq4a_          15 ESLRFECRS-DEDVITAALRQNI------FLMSSCREGGCATCKALCSEG   57 (98)
T ss_dssp             EEEEEEEES-CCTHHHHHHHHTC------CCCCSCCSSCCCCCCBCEEEC
T ss_pred             CEEEEEeCC-CchHHHHHHHcCC------CeEEcCCCceeCCceEEEEEC
Confidence            557888888 9999999999884      266779999999999977 45

>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Thauera aromatica [TaxId: 59405]

Probab=97.74  E-value=4.2e-06  Score=60.84  Aligned_cols=47  Identities=23%  Similarity=0.574  Sum_probs=32.8

Q ss_pred             ccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCccc------ccccccCCCC
Q 045926          203 YECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAI------KNCTATCPKG  276 (302)
Q Consensus       203 ~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~C------g~C~~vCP~g  276 (302)
                      ++||.||.|+.+||+.....                .+..          .  .. ....|+.|      |.|..+||++
T Consensus         6 d~Ci~Cg~C~~~CP~~AI~~----------------~~~~----------~--~i-d~~~C~~C~~~~~~G~C~~vCP~~   56 (80)
T d1rgva_           6 DDCTACDACVEECPNEAITP----------------GDPI----------Y--VI-DPTKCSECVGAFDEPQCRLVCPAD   56 (80)
T ss_dssp             SCCCCCCTTTTTCTTCCEEC----------------CSSS----------C--EE-CTTTCCTTTTTCSSCHHHHHCSSC
T ss_pred             ccCcCCcCHHHHHHhCcccc----------------cccc----------c--cc-cCCCCcCCCCcCCCCcchhhcccc
Confidence            58999999999999754210                0110          0  01 23579999      8999999998


Q ss_pred             CC
Q 045926          277 LD  278 (302)
Q Consensus       277 I~  278 (302)
                      +-
T Consensus        57 AI   58 (80)
T d1rgva_          57 CI   58 (80)
T ss_dssp             CC
T ss_pred             Ce
Confidence            64

>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Chromatium vinosum [TaxId: 1049]

Probab=97.74  E-value=3.5e-06  Score=61.34  Aligned_cols=48  Identities=25%  Similarity=0.506  Sum_probs=33.3

Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCccc------ccccccCCC
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAI------KNCTATCPK  275 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~C------g~C~~vCP~  275 (302)
                      .++||.||.|+.+||+.....                .+..          .  .. ....|+.|      |.|+.+||+
T Consensus         5 td~Ci~Cg~C~~~CP~~AI~~----------------~~~~----------~--~i-d~~~C~~C~~~~~~G~C~~vCP~   55 (80)
T d1blua_           5 TDECINCDVCEPECPNGAISQ----------------GDET----------Y--VI-EPSLCTECVGHYETSQCVEVCPV   55 (80)
T ss_dssp             CTTCCCCCTTGGGCTTCCEEE----------------CSSS----------E--EE-CGGGCCTTTTTCSSCHHHHHCTT
T ss_pred             CcCCCChHHHHHHChhcchhh----------------cCcc----------e--EE-ccccccCCCCCCCCCccccccCC
Confidence            468999999999999754210                0110          0  11 24579999      899999999


Q ss_pred             CCC
Q 045926          276 GLD  278 (302)
Q Consensus       276 gI~  278 (302)
                      ++-
T Consensus        56 ~AI   58 (80)
T d1blua_          56 DCI   58 (80)
T ss_dssp             CCE
T ss_pred             CCc
Confidence            863

>d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

Probab=97.72  E-value=2.1e-05  Score=58.67  Aligned_cols=41  Identities=27%  Similarity=0.512  Sum_probs=31.3

Q ss_pred             EEEEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEE-CCE
Q 045926           80 SYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNI-GGT  128 (302)
Q Consensus        80 ~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~V-nG~  128 (302)
                      .+.|++++ |.|||||+++.+  ..|     .+|+.|+||+|.+.| .|.
T Consensus        12 ~~~~~~~~-~~~lLdaa~~~~--~lp-----~~Cr~G~CgtC~~~v~~G~   53 (93)
T d1wria_          12 DITFDVEP-GERLIDIGSEKA--DLP-----LSCQAGACSTCLGKIVSGT   53 (93)
T ss_dssp             EEEEEECT-TSCHHHHHHHHS--CCC-----CSSSSSSSSTTEEEEEESC
T ss_pred             cEEEEeCC-CCcHHHHHHhCC--CEE-----EEeCCcccCcCEeEeecce
Confidence            36677777 899999997643  233     479999999999986 453

>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Bacillus schlegelii [TaxId: 1484]

Probab=97.72  E-value=3.4e-06  Score=60.93  Aligned_cols=48  Identities=23%  Similarity=0.388  Sum_probs=33.8

Q ss_pred             cccCccc--CcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          202 LYECILC--ACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       202 ~~~CI~C--G~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      .++|++|  |.|+.+||+.....                .+..          +  .. ....|+.||.|+.+||+++-
T Consensus         5 ~~~C~~C~~g~C~~~CP~~Ai~~----------------~~~~----------~--~i-d~~~C~~Cg~C~~~CP~~AI   54 (77)
T d1bc6a_           5 TEPCIGTKDASCVEVCPVDCIHE----------------GEDQ----------Y--YI-DPDVCIDCGACEAVCPVSAI   54 (77)
T ss_dssp             CSTTTTCCCCSSTTTCTTCCEEE----------------CSSS----------E--EE-CTTTCCSCCSHHHHSGGGSS
T ss_pred             CccCCCccCcchhhhCCCCCeec----------------cCCE----------E--EE-ChhHCcCcCccchhCCcccc
Confidence            4689999  99999999754210                0110          0  01 23579999999999998874

>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Thermus thermophilus [TaxId: 274]

Probab=97.55  E-value=4.8e-06  Score=60.11  Aligned_cols=48  Identities=19%  Similarity=0.353  Sum_probs=33.9

Q ss_pred             cccCccc--CcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          202 LYECILC--ACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       202 ~~~CI~C--G~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ..+|++|  |.|+.+||+....                 .+.. .        +  .. ....|+.||.|+.+||+++-
T Consensus         5 ~d~C~~C~~~~C~~~CP~~AI~-----------------~~~~-~--------~--~i-d~~~Ci~Cg~C~~~CP~~AI   54 (77)
T d1h98a_           5 CEPCIGVKDQSCVEVCPVECIY-----------------DGGD-Q--------F--YI-HPEECIDCGACVPACPVNAI   54 (77)
T ss_dssp             CGGGTTTCCCHHHHHCTTCCEE-----------------ECSS-S--------E--EE-CTTTCCCCCTHHHHCTTCCE
T ss_pred             CccCCCcCCchhHHHCCCCceE-----------------ccCc-E--------E--EE-cHHHCCCcCcCccccCcCcc
Confidence            4679999  8999999976421                 0110 0        0  11 34689999999999999973

>d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Trichomonas vaginalis [TaxId: 5722]

Probab=97.53  E-value=5.7e-05  Score=56.22  Aligned_cols=42  Identities=12%  Similarity=0.363  Sum_probs=32.8

Q ss_pred             eEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEEC
Q 045926           79 QSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIG  126 (302)
Q Consensus        79 ~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~Vn  126 (302)
                      ++..|++.+ |.|||+||.+.+...+     ...|. .|.||+|.|.|.
T Consensus        10 ~~~~i~~~~-G~tLl~al~~~gi~~i-----~~~CgG~~~C~tC~v~v~   52 (93)
T d1l5pa_          10 VKKQLKFED-DQTLFTVLTEAGLMSA-----DDTCQGNKACGKCICKHV   52 (93)
T ss_dssp             EEEEEECCT-TEEHHHHHHTTTSSCC-----TTSCSSSSSSCCCEEEEE
T ss_pred             eEEEEEeCC-CchHHHHHHHhCCCCc-----cccccCCCEeCccEEEEc
Confidence            557888888 9999999998773212     23685 699999999985

>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.48  E-value=4.1e-05  Score=60.40  Aligned_cols=38  Identities=29%  Similarity=0.636  Sum_probs=30.6

Q ss_pred             EEecCCCchhHHHHHHHcccccCCCcccccCCCCCccCccEEEEC
Q 045926           82 HVDLSECGPMVLDALQKIKAETDSSLSYRRSCREGICGSCAMNIG  126 (302)
Q Consensus        82 ~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~~g~CG~C~V~Vn  126 (302)
                      .|++.+ |.|||||+++.|..      ...+|+.|.||+|.+.|-
T Consensus        39 t~~v~~-g~tlLdaa~~aGi~------ip~~Cr~G~CgsC~~~v~   76 (128)
T d1doia_          39 SLEVNE-GEYILEAAEAQGYD------WPFSCRAGACANCAAIVL   76 (128)
T ss_dssp             EEECCT-TSCHHHHHHHTTCC------CCCSSSSSSSSTTEEEEE
T ss_pred             EEEECc-CChHHHHHHHcCCC------CccCCCCCcCCCCceEee
Confidence            355666 89999999998842      556799999999999773

>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Dihydropyrimidine dehydrogenase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.48  E-value=2.7e-06  Score=70.81  Aligned_cols=52  Identities=23%  Similarity=0.400  Sum_probs=33.5

Q ss_pred             ccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC
Q 045926          199 LDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK  275 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~  275 (302)
                      ..+.++||.||.|+.+||.....               .+... ...   .   .  .. ....|+.||.|+.+||+
T Consensus       103 ~id~~~Ci~C~~C~~~Cp~~ai~---------------~i~~~-~~~---~---~--~v-~~~~C~gCg~C~~vCP~  154 (173)
T d1gtea5         103 VIDEEMCINCGKCYMTCNDSGYQ---------------AIQFD-PET---H---L--PT-VTDTCTGCTLCLSVCPI  154 (173)
T ss_dssp             EECTTTCCCCCHHHHHHHHHSCS---------------CEEEC-TTT---C---C--EE-ECTTCCCCCHHHHHCSS
T ss_pred             EEEchhCCCchHHHHhhhhCCEE---------------EEEec-CCC---c---e--Ee-chhhCCCcChhHhhCCC
Confidence            45678999999999999954321               00000 000   0   0  11 34589999999999995

>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Fe3S4-ferredoxin PF1909
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.42  E-value=3.5e-06  Score=58.61  Aligned_cols=55  Identities=18%  Similarity=0.277  Sum_probs=34.8

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .+..+||.||.|+.+||.......                ++....       ..........|..||.|+.+||+++
T Consensus         6 vD~~~Ci~Cg~C~~~CP~~~~~~~----------------~~~~~~-------~~~~~~~~~~c~~c~~c~~~CP~~A   60 (66)
T d1sj1a_           6 VDQDTCIGDAICASLCPDVFEMND----------------EGKAQP-------KVEVIEDEELYNCAKEAMEACPVSA   60 (66)
T ss_dssp             ECTTTCCCCCHHHHHCTTTEEECT----------------TSCEEE-------SCSCBCCHHHHHHHHHHHHHCTTCC
T ss_pred             EeHHHCCCcChhhhhCCceEEEcc----------------cCceEe-------eccccCChHHHhhhCHhhccCCccc
Confidence            456899999999999997542211                111000       0000002236999999999999986

>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]

Probab=97.40  E-value=0.00021  Score=54.12  Aligned_cols=42  Identities=17%  Similarity=0.403  Sum_probs=32.9

Q ss_pred             eEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEEC
Q 045926           79 QSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIG  126 (302)
Q Consensus        79 ~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~Vn  126 (302)
                      ++++|++.+ |.|||+||++.+.   |.+  ...|. .|.||+|.|.|.
T Consensus        11 ~~~~i~~~~-G~tLl~a~~~~gi---~~i--~~~CgG~g~C~tC~V~i~   53 (106)
T d1e9ma_          11 TRHEVEAKP-GLTVMEAARDNGV---PGI--DADCGGACACSTCHAYVD   53 (106)
T ss_dssp             CEEEEECCT-TSBHHHHHHTTTC---TTC--CCTTSSSSSSCTTEEEEC
T ss_pred             CEEEEEECC-CChHHHHHHHcCC---CCc--CcccccCceecceEEEec
Confidence            457898888 9999999999873   222  23585 599999999996

>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin-like ferredoxin
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.00012  Score=55.77  Aligned_cols=39  Identities=21%  Similarity=0.425  Sum_probs=30.3

Q ss_pred             EEEecCCCchhHHHHHHHcccccCCCcccccCC-CCCccCccEEEEC
Q 045926           81 YHVDLSECGPMVLDALQKIKAETDSSLSYRRSC-REGICGSCAMNIG  126 (302)
Q Consensus        81 y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C-~~g~CG~C~V~Vn  126 (302)
                      .+|++.+ |.|||||+++.+.. +     ..+| +.|.||+|.|.|.
T Consensus        16 ~~v~~~~-G~tLl~aa~~~gi~-i-----~~~CgG~g~CgtC~v~v~   55 (109)
T d1i7ha_          16 AVLEANS-GETILDAALRNGIE-I-----EHACEKSCACTTCHCIVR   55 (109)
T ss_dssp             EEEECCT-TCBHHHHHHHTTCC-C-----CCTTSSSSCCSTTEEEEE
T ss_pred             cEEEeCC-CCcHHHHHHHcCCC-C-----CcCCCCcceeCCeEEEee
Confidence            4567777 99999999998742 3     3458 5799999999763

>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.35  E-value=1.7e-05  Score=60.64  Aligned_cols=48  Identities=23%  Similarity=0.441  Sum_probs=34.0

Q ss_pred             cccCccc--CcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          202 LYECILC--ACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       202 ~~~CI~C--G~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ..+||+|  |.|+.+||+.....                .++.          +  .. ....|+.||.|..+||.++-
T Consensus         5 ~~~C~~C~~~~C~~~CP~~ai~~----------------~~~~----------~--~i-d~~~Ci~Cg~C~~~CP~~ai   54 (106)
T d7fd1a_           5 TDNCIKCKYTDCVEVCPVDCFYE----------------GPNF----------L--VI-HPDECIDCALCEPECPAQAI   54 (106)
T ss_dssp             CGGGTTTCCCHHHHHCTTCCEEE----------------CSSC----------E--EE-CTTTCCCCCTTGGGCTTCCE
T ss_pred             CccCCCCCCCccccccCCCcccc----------------cCCE----------E--EE-chHHCCCCCCccccCCCCCc
Confidence            4589999  89999999754210                1110          0  01 34589999999999999975

>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin A
species: Thermotoga maritima [TaxId: 2336]

Probab=97.26  E-value=1.4e-05  Score=54.35  Aligned_cols=51  Identities=22%  Similarity=0.475  Sum_probs=34.3

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .+.++|+.||.|+.+||......                .++...        +..   ....|..|+.|+++||+++
T Consensus         5 iD~~~C~~Cg~C~~~cP~~~~~~----------------~~g~~~--------~~~---~~~~c~~c~~c~~~CP~~A   55 (59)
T d1vjwa_           5 VDADACIGCGVCENLCPDVFQLG----------------DDGKAK--------VLQ---PETDLPCAKDAADSCPTGA   55 (59)
T ss_dssp             ECTTTCCCCCHHHHHCTTTEEEC----------------TTSSEE--------ESC---SBCCCTHHHHHHHHCTTCC
T ss_pred             EeHHHCCCCCCChHhCchheEEc----------------cceeeE--------Eec---ChHHCcCcCcccCccCccc
Confidence            45679999999999999643211                111110        111   2246999999999999986

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]

Probab=97.26  E-value=6.2e-06  Score=57.12  Aligned_cols=55  Identities=20%  Similarity=0.313  Sum_probs=36.2

Q ss_pred             hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .+-+.++||.||.|+.+||......++               +++.     +   +. .. ....|..|+.|+.+||+++
T Consensus         4 ~~VD~~~CigCg~C~~~cP~~f~~~~~---------------~~~~-----~---~~-~~-~~~~c~~c~~c~~~CP~~a   58 (64)
T d1fxra_           4 FYVDQDECIACESCVEIAPGAFAMDPE---------------IEKA-----Y---VK-DV-EGASQEEVEEAMDTCPVQC   58 (64)
T ss_dssp             EEECTTTCCCCCHHHHHCTTTEEEETT---------------TTEE-----E---ES-CT-TSSCHHHHHHHHHHCTTCC
T ss_pred             EEEchhhCccCCCccccCcCeEEEecC---------------CCee-----e---ee-cc-CCCcchhHHHHHhcCCccc
Confidence            345678999999999999975321100               0100     0   10 11 3457999999999999986

>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.17  E-value=0.00048  Score=51.93  Aligned_cols=43  Identities=14%  Similarity=0.313  Sum_probs=32.6

Q ss_pred             eEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEEC
Q 045926           79 QSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIG  126 (302)
Q Consensus        79 ~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~Vn  126 (302)
                      ++++|+++. |.|||+|+++.+. .+|.+   ..|. .+.||+|.|.|.
T Consensus        13 ~~~~i~~~~-G~tLl~~~~~~gi-~i~~~---~~CgG~~~C~tC~V~v~   56 (104)
T d2bt6a1          13 ETLTTKGKI-GDSLLDVVVQNNL-DIDGF---GACEGTLACSTCHLIFE   56 (104)
T ss_dssp             CEEEEEEET-TCBHHHHHHHTTC-CCTTT---TTTSSSSSBSTTEEECC
T ss_pred             CEEEEEeCC-CchHHHHHHHcCC-Ccccc---cccCCccccceEEEEec
Confidence            357888887 9999999998763 34433   3464 689999999885

>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Adenylylsulfate reductase B subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.00  E-value=3.9e-05  Score=61.79  Aligned_cols=52  Identities=23%  Similarity=0.512  Sum_probs=34.0

Q ss_pred             ccccCcccC-----cccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCC
Q 045926          201 GLYECILCA-----CCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPK  275 (302)
Q Consensus       201 ~~~~CI~CG-----~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~  275 (302)
                      +.++|+.||     .|+.+||+....                 .+....    +  .+  .. ....|..||.|+.+||.
T Consensus         5 d~~~C~gCg~c~~~~C~~~CP~~ai~-----------------~~~~~~----~--~~--~~-d~~~C~~C~~C~~~CP~   58 (149)
T d1jnrb_           5 NPEKCDGCKALERTACEYICPNDLMT-----------------LDKEKM----K--AY--NR-EPDMCWECYSCVKMCPQ   58 (149)
T ss_dssp             CTTTCCSCCSSSSCHHHHHCTTSCEE-----------------EETTTT----E--EE--ES-CGGGCCCCCHHHHHCTT
T ss_pred             cchhCCCCCCCCcchHHHhCCcccEE-----------------ecCCCc----E--EE--Ee-ccccCCCCccccCcCch
Confidence            457899999     699999975421                 111000    0  00  01 23589999999999998


Q ss_pred             CCC
Q 045926          276 GLD  278 (302)
Q Consensus       276 gI~  278 (302)
                      ++-
T Consensus        59 ~Ai   61 (149)
T d1jnrb_          59 GAI   61 (149)
T ss_dssp             CCE
T ss_pred             hee
Confidence            873

>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Desulfovibrio gigas [TaxId: 879]

Probab=96.97  E-value=3.5e-05  Score=52.20  Aligned_cols=49  Identities=14%  Similarity=0.453  Sum_probs=32.2

Q ss_pred             ccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          203 YECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       203 ~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      ++||.||.|+.+||......                .++...       .+.  . ....|..|+.|.++||+++
T Consensus         6 e~CigCg~C~~~CP~~~~~~----------------~~g~~~-------~~~--~-~~~~~~~c~~c~~~CP~~A   54 (58)
T d1fxda_           6 DDCMACEACVEICPDVFEMN----------------EEGDKA-------VVI--N-PDSDLDCVEEAIDSCPAEA   54 (58)
T ss_dssp             TTCCCCCHHHHHCTTTEEEC----------------SSSSSE-------EES--C-TTCCCHHHHHHHHHCTTCC
T ss_pred             ccCcChhhHHHHcChhheEc----------------CCCCEE-------EEe--c-CCCCcHHHHHHhhcCChhc
Confidence            57999999999999654211                111100       011  1 2346888999999999986

>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas putida, putidaredoxin [TaxId: 303]

Probab=96.52  E-value=0.0026  Score=47.83  Aligned_cols=42  Identities=14%  Similarity=0.341  Sum_probs=32.9

Q ss_pred             eEEEEecCCCchhHHHHHHHcccccCCCcccccCCC-CCccCccEEEEC
Q 045926           79 QSYHVDLSECGPMVLDALQKIKAETDSSLSYRRSCR-EGICGSCAMNIG  126 (302)
Q Consensus        79 ~~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C~-~g~CG~C~V~Vn  126 (302)
                      ++++|++.+ |.|||+|+++.+...+     ...|. .|.||+|.|.|.
T Consensus        11 ~~~~i~~~~-G~tLl~aa~~~gi~~i-----~~~CgG~~~C~tC~V~v~   53 (106)
T d1xlqa1          11 TRRELDVAD-GVSLMQAAVSNGIYDI-----VGDCGGSASCATCHVYVN   53 (106)
T ss_dssp             CEEEEECCT-TCBHHHHHHHTTCTTS-----CCTTCSSSSSCTTEEEEC
T ss_pred             CEEEEEeCC-CChHHHHHHHhCcCCc-----hhhhhhccccccceEEec
Confidence            458899988 9999999999874212     22475 699999999996

>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas sp., terpredoxin [TaxId: 306]

Probab=96.47  E-value=0.0011  Score=49.84  Aligned_cols=41  Identities=20%  Similarity=0.521  Sum_probs=32.3

Q ss_pred             EEEEecCCCchhHHHHHHHcccccCCCcccccCC-CCCccCccEEEEC
Q 045926           80 SYHVDLSECGPMVLDALQKIKAETDSSLSYRRSC-REGICGSCAMNIG  126 (302)
Q Consensus        80 ~y~v~~~~~g~tvLdal~~i~~~~dptL~~~~~C-~~g~CG~C~V~Vn  126 (302)
                      +++|++.+ |.|||+|+.+.+...     +...| +.|.||+|.|.|.
T Consensus        12 ~~~v~~~~-G~tLl~aa~~~gi~~-----i~~~CgG~g~C~tC~V~v~   53 (105)
T d1b9ra_          12 EYAVDAQD-GQSLMEVATQNGVPG-----IVAECGGSCVCATCRIEIE   53 (105)
T ss_dssp             CEEEECCT-TCCTTHHHHHHTCCC-----CCCSSTTSSCCCCCCCEEC
T ss_pred             EEEEEECC-CCcHHHHHHHcCCCC-----cccccCCCccccceEEEec
Confidence            47788888 999999999987421     23358 4699999999986

>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Formate dehydrogenase N, iron-sulfur (beta) subunit
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0005  Score=59.59  Aligned_cols=60  Identities=23%  Similarity=0.509  Sum_probs=40.2

Q ss_pred             hccccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccc---------c
Q 045926          198 KLDGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIK---------N  268 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg---------~  268 (302)
                      .+.+.++||.|+.|+.+||....    +             .+..             .. ....|++|.         +
T Consensus       125 V~id~~~CiGC~~C~~ACPyga~----~-------------~~~~-------------~~-~~~KC~~C~~r~~~G~~Pa  173 (244)
T d1kqfb1         125 VDFQSENCIGCGYCIAGCPFNIP----R-------------LNKE-------------DN-RVYKCTLCVDRVSVGQEPA  173 (244)
T ss_dssp             EEECGGGCCCCCHHHHHCTTCCC----E-------------EETT-------------TT-EEECCCTTHHHHTTTCCCH
T ss_pred             EEEccccccchhhHhhcCCCCCc----E-------------eccc-------------cC-cceecccchhhhcCCCCcc
Confidence            34567889999999999996431    0             0110             11 467899993         8


Q ss_pred             ccccCCCCCC----HHHHHHHHHH
Q 045926          269 CTATCPKGLD----PADAIHKMKT  288 (302)
Q Consensus       269 C~~vCP~gI~----~~~~I~~lR~  288 (302)
                      |+++||+++-    ..++....++
T Consensus       174 Cv~~CP~~Al~fG~~~e~~~~~~~  197 (244)
T d1kqfb1         174 CVKTCPTGAIHFGTKKEMLELAEQ  197 (244)
T ss_dssp             HHHHCTTSCEEEEEHHHHHHHHHH
T ss_pred             hHHhcccCCEEEecHHHHHHHHHH
Confidence            9999999997    3444444443

>d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL, N-terminal domain {Pelobacter acidigallici [TaxId: 35816]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Transhydroxylase beta subunit, BthL, N-terminal domain
species: Pelobacter acidigallici [TaxId: 35816]

Probab=96.07  E-value=0.0012  Score=55.10  Aligned_cols=21  Identities=14%  Similarity=-0.085  Sum_probs=17.8

Q ss_pred             hccccccCcccCcccCCCCCc
Q 045926          198 KLDGLYECILCACCTTSCPSY  218 (302)
Q Consensus       198 ~~~~~~~CI~CG~C~~aCP~~  218 (302)
                      ...+.++||.||.|+.+||..
T Consensus        92 V~id~~kCiGC~~C~~aCPy~  112 (195)
T d1vlfn2          92 VLIDPEKAKGKKELLDTCPYG  112 (195)
T ss_dssp             EEECTTTTTTCGGGGGGCSSC
T ss_pred             eeeehhhccccchhhcCCCCC
Confidence            455678999999999999964

>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin
species: Bacillus thermoproteolyticus [TaxId: 1427]

Probab=95.78  E-value=0.00037  Score=50.13  Aligned_cols=60  Identities=18%  Similarity=0.326  Sum_probs=35.5

Q ss_pred             cccccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCC
Q 045926          200 DGLYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI  277 (302)
                      .+...||.||.|+.+||.+....++  |-..+      ..++...         .... ....|..|+.|..+||+++
T Consensus         6 VD~~~CigCg~C~~~cP~~f~~~~d--g~~~~------~~~~~~~---------~~~v-~~~~~~~~~~aa~~CP~~A   65 (81)
T d1iqza_           6 VDKETCIACGACGAAAPDIYDYDED--GIAYV------TLDDNQG---------IVEV-PDILIDDMMDAFEGCPTDS   65 (81)
T ss_dssp             ECTTTCCCCSHHHHHCTTTEEECTT--SCEEE------TTTTTSS---------CSCC-CGGGHHHHHHHHHHCTTCC
T ss_pred             EeHHHCcCcChHhHhCchheeEcCC--CeEEE------eecCCcC---------cccC-CHHHHHHHHHHHHhCCccc
Confidence            4567899999999999976532211  10000      0011000         0011 2347899999999999987

>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: DsrB insert domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.70  E-value=0.00012  Score=50.75  Aligned_cols=18  Identities=28%  Similarity=0.608  Sum_probs=15.6

Q ss_pred             cccCcccccccccCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...|+.||.|+.+||.+.
T Consensus        42 ~~~CigCg~C~~aCP~~a   59 (65)
T d3c7bb1          42 VEKCMYCGNCYTMCPGMP   59 (65)
T ss_dssp             TTTCCCCCHHHHHCTTCC
T ss_pred             CCcCcccChhhhhCCccc
Confidence            458999999999999754

>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Respiratory nitrate reductase 1 beta chain
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.00087  Score=63.92  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=18.1

Q ss_pred             hhccccccCcccCcccCCCCCc
Q 045926          197 KKLDGLYECILCACCTTSCPSY  218 (302)
Q Consensus       197 ~~~~~~~~CI~CG~C~~aCP~~  218 (302)
                      ..+.+.++||.||.|+.+||..
T Consensus       209 ~v~id~~~CigC~~C~~aCPy~  230 (509)
T d1y5ib1         209 IVLIDQDKCRGWRMCITGCPYK  230 (509)
T ss_dssp             CEEECTTTCCCCCCHHHHCTTC
T ss_pred             cEEEchhhccchHHHHhhCCCC
Confidence            3456788999999999999954

>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Formate dehydrogenase N, iron-sulfur (beta) subunit
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.0013  Score=56.85  Aligned_cols=51  Identities=24%  Similarity=0.444  Sum_probs=34.0

Q ss_pred             ccccCcccCc--ccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCcccccccccCCCCCC
Q 045926          201 GLYECILCAC--CTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       201 ~~~~CI~CG~--C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ....|.+|+-  |+.+||+....                 .+..+.       .+  .. ....|+.|+.|+.+||.|+.
T Consensus        95 ~~~~C~HC~~p~Cv~vCPt~Aa~-----------------~~~e~G-------~V--~i-d~~~CiGC~~C~~ACPyga~  147 (244)
T d1kqfb1          95 RKDGCMHCEDPGCLKACPSAGAI-----------------IQYANG-------IV--DF-QSENCIGCGYCIAGCPFNIP  147 (244)
T ss_dssp             EEESCCCBSSCHHHHHCCSTTSE-----------------EEETTS-------CE--EE-CGGGCCCCCHHHHHCTTCCC
T ss_pred             cchhhccccCCccccccccccee-----------------EEcCCC-------cE--EE-ccccccchhhHhhcCCCCCc
Confidence            3457999997  99999974310                 111000       00  01 23589999999999999985

>d1h0hb_ d.58.1.5 (B:) Tungsten containing formate dehydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Tungsten containing formate dehydrogenase, small subunit
species: Desulfovibrio gigas [TaxId: 879]

Probab=94.20  E-value=0.0062  Score=51.31  Aligned_cols=60  Identities=12%  Similarity=0.217  Sum_probs=40.6

Q ss_pred             cccCcccCcccCCCCCcccCCCCcccHHHHHHHHHHhccCcchhHHHHHHHhhhcccccccCccc---------cccccc
Q 045926          202 LYECILCACCTTSCPSYWWNPEEYLGPAALLHAYRWICDSRDELTEERLQALTEDERKLYRCRAI---------KNCTAT  272 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~~~~~~~lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~~~~~~C~~C---------g~C~~v  272 (302)
                      ..+|+.|+.|+.+||....   .              .+..             .. .+..|.+|         -+|+++
T Consensus       107 ~~~c~gc~~C~~aCPy~~~---~--------------~~~~-------------~~-~~~KCd~C~~R~~~G~~PaCV~~  155 (214)
T d1h0hb_         107 TKDLEDYESVISACPYDVP---R--------------KVAE-------------SN-QMAKCDMCIDRITNGLRPACVTS  155 (214)
T ss_dssp             GGGCSCHHHHHHHCTTCCC---E--------------ECTT-------------SS-CEECCCTTHHHHTTTCCCHHHHH
T ss_pred             cccccCcceecccCCCCCc---e--------------eccc-------------CC-ccEeCcccHHHHhCCCCCCceee
Confidence            3479999999999995321   0              0110             11 45689999         379999


Q ss_pred             CCCCCC----HHHHHHHHHHHHhh
Q 045926          273 CPKGLD----PADAIHKMKTKHML  292 (302)
Q Consensus       273 CP~gI~----~~~~I~~lR~~l~~  292 (302)
                      ||+++-    ..+....+++.+.+
T Consensus       156 CP~~Al~fGd~~d~~~~~~~r~~~  179 (214)
T d1h0hb_         156 CPTGAMNFGDLSEMEAMASARLAE  179 (214)
T ss_dssp             CSSSCEEEEEHHHHHHHHHHHHHH
T ss_pred             cccCCEEEeehhhhHHHHHHHHHH
Confidence            999997    56666666665544

>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: DsrB insert domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.82  E-value=0.0075  Score=41.31  Aligned_cols=23  Identities=26%  Similarity=0.618  Sum_probs=18.5

Q ss_pred             hhccccccCcccCcccCCCCCcc
Q 045926          197 KKLDGLYECILCACCTTSCPSYW  219 (302)
Q Consensus       197 ~~~~~~~~CI~CG~C~~aCP~~~  219 (302)
                      ....+.++||.||.|+.+||...
T Consensus        37 ~v~id~~~CigCg~C~~aCP~~a   59 (65)
T d3c7bb1          37 TIKVDVEKCMYCGNCYTMCPGMP   59 (65)
T ss_dssp             EEEECTTTCCCCCHHHHHCTTCC
T ss_pred             cEEEeCCcCcccChhhhhCCccc
Confidence            34456789999999999999644

>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Respiratory nitrate reductase 1 beta chain
species: Escherichia coli [TaxId: 562]

Probab=92.64  E-value=0.0036  Score=59.57  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=16.9

Q ss_pred             ccccccCcccCc--ccCCCCCcc
Q 045926          199 LDGLYECILCAC--CTTSCPSYW  219 (302)
Q Consensus       199 ~~~~~~CI~CG~--C~~aCP~~~  219 (302)
                      ++-...|.+|.-  |+.+||+..
T Consensus       178 ~~~~~~C~hC~~~~C~~~CP~gA  200 (509)
T d1y5ib1         178 MYLPRLCEHCLNPACVATCPSGA  200 (509)
T ss_dssp             EEEEECCCCCSSCHHHHHCTTCC
T ss_pred             EEecccccCCCCchhhhhcCcCc
Confidence            344568999987  999999865

>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Chromatium vinosum [TaxId: 1049]

Probab=92.17  E-value=0.024  Score=40.08  Aligned_cols=18  Identities=28%  Similarity=0.680  Sum_probs=16.2

Q ss_pred             ccCcccccccccCCCCCC
Q 045926          261 YRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       261 ~~C~~Cg~C~~vCP~gI~  278 (302)
                      ..|+.||.|+.+||+++-
T Consensus         6 d~Ci~Cg~C~~~CP~~AI   23 (80)
T d1blua_           6 DECINCDVCEPECPNGAI   23 (80)
T ss_dssp             TTCCCCCTTGGGCTTCCE
T ss_pred             cCCCChHHHHHHChhcch
Confidence            579999999999999873

>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Thauera aromatica [TaxId: 59405]

Probab=91.70  E-value=0.027  Score=39.83  Aligned_cols=17  Identities=29%  Similarity=0.765  Sum_probs=15.7

Q ss_pred             ccCcccccccccCCCCC
Q 045926          261 YRCRAIKNCTATCPKGL  277 (302)
Q Consensus       261 ~~C~~Cg~C~~vCP~gI  277 (302)
                      ..|+.||.|+.+||.++
T Consensus         6 d~Ci~Cg~C~~~CP~~A   22 (80)
T d1rgva_           6 DDCTACDACVEECPNEA   22 (80)
T ss_dssp             SCCCCCCTTTTTCTTCC
T ss_pred             ccCcCCcCHHHHHHhCc
Confidence            47999999999999987

>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase larger subunit, N-domain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=91.41  E-value=0.023  Score=40.63  Aligned_cols=19  Identities=37%  Similarity=0.835  Sum_probs=16.2

Q ss_pred             ccccCcccCcccCCCCCcc
Q 045926          201 GLYECILCACCTTSCPSYW  219 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~  219 (302)
                      +...|+.||.|+.+||+..
T Consensus        61 ~~~~C~~Cg~C~~~CP~~A   79 (85)
T d1hfel2          61 HIEACINCGQCLTHCPENA   79 (85)
T ss_dssp             CGGGCCCCCTTGGGCTTCC
T ss_pred             ChhHCCCcChhhhhCCccc
Confidence            4567999999999999754

>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Clostridium acidurici [TaxId: 1556]

Probab=91.35  E-value=0.035  Score=36.29  Aligned_cols=18  Identities=22%  Similarity=0.534  Sum_probs=16.0

Q ss_pred             ccCcccccccccCCCCCC
Q 045926          261 YRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       261 ~~C~~Cg~C~~vCP~gI~  278 (302)
                      ..|+.||.|+.+||.++-
T Consensus         6 e~C~~Cg~C~~~Cp~~ai   23 (55)
T d2fdna_           6 EACISCGACEPECPVNAI   23 (55)
T ss_dssp             TTCCCCCTTGGGCTTCCE
T ss_pred             cCCCChhhHHHhcCccce
Confidence            479999999999999863

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=91.22  E-value=0.043  Score=43.14  Aligned_cols=25  Identities=24%  Similarity=0.493  Sum_probs=19.9

Q ss_pred             ccCCCCCccCccEEEECCE---Eecccc
Q 045926          110 RRSCREGICGSCAMNIGGT---NTVACL  134 (302)
Q Consensus       110 ~~~C~~g~CG~C~V~VnG~---~~laC~  134 (302)
                      +-.|+.|+||+|.|.+.+.   ..+.|.
T Consensus       121 ~m~Cg~GiCg~C~~~~~~g~~~~~~vC~  148 (160)
T d1ep3b2         121 RMACGIGACYACVEHDKEDESHALKVCE  148 (160)
T ss_dssp             CCSSSSSSSCTTEEEETTEEEEEEETTT
T ss_pred             cccCCCcccCcCcceecCCCCCeeEEeC
Confidence            3469999999999999873   356784

>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Short-chain ferredoxins
domain: Ferredoxin II
species: Peptostreptococcus asaccharolyticus [TaxId: 1258]

Probab=91.13  E-value=0.038  Score=36.14  Aligned_cols=17  Identities=29%  Similarity=0.669  Sum_probs=15.7

Q ss_pred             ccCcccccccccCCCCC
Q 045926          261 YRCRAIKNCTATCPKGL  277 (302)
Q Consensus       261 ~~C~~Cg~C~~vCP~gI  277 (302)
                      ..|+.||.|+.+||.++
T Consensus         6 d~C~~C~~C~~~CP~~a   22 (55)
T d1dura_           6 DSCIACGACKPECPVNC   22 (55)
T ss_dssp             TTCCCCCCSGGGCTTCC
T ss_pred             ccCcChhHHHhhCCcCe
Confidence            47999999999999986

>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Photosystem I iron-sulfur protein PsaC
species: Synechococcus elongatus [TaxId: 32046]

Probab=90.41  E-value=0.032  Score=39.17  Aligned_cols=19  Identities=21%  Similarity=0.613  Sum_probs=16.7

Q ss_pred             cccCcccccccccCCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ...|+.||.|+.+||.++-
T Consensus         7 ~d~Ci~Cg~Cv~~Cp~~~i   25 (80)
T d1jb0c_           7 YDTCIGCTQCVRACPTDVL   25 (80)
T ss_dssp             ETTCCCCCHHHHHCTTCCC
T ss_pred             CCCCcCccCHHHhCCccce
Confidence            3589999999999999874

>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.92  E-value=0.042  Score=40.97  Aligned_cols=22  Identities=36%  Similarity=0.664  Sum_probs=18.4

Q ss_pred             ccccccCcccCcccCCCCCccc
Q 045926          199 LDGLYECILCACCTTSCPSYWW  220 (302)
Q Consensus       199 ~~~~~~CI~CG~C~~aCP~~~~  220 (302)
                      ..+...||.||.|+.+||+...
T Consensus        33 ~id~~~Ci~Cg~C~~~CP~~ai   54 (106)
T d7fd1a_          33 VIHPDECIDCALCEPECPAQAI   54 (106)
T ss_dssp             EECTTTCCCCCTTGGGCTTCCE
T ss_pred             EEchHHCCCCCCccccCCCCCc
Confidence            3466789999999999998764

>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Archaeal ferredoxins
domain: Ferredoxin
species: Archaeon Sulfolobus sp. [TaxId: 2288]

Probab=89.78  E-value=0.039  Score=40.68  Aligned_cols=19  Identities=26%  Similarity=0.541  Sum_probs=17.0

Q ss_pred             cccCcccccccccCCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ...|+.||.|+.+||.++-
T Consensus        42 ~~~Ci~Cg~C~~~CP~~ai   60 (103)
T d1xera_          42 FDLCIADGSCINACPVNVF   60 (103)
T ss_dssp             TTTCCCCCHHHHHCTTCCC
T ss_pred             HHHCcCcCcccccCcccce
Confidence            4589999999999999974

>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=88.82  E-value=0.085  Score=40.32  Aligned_cols=17  Identities=35%  Similarity=0.980  Sum_probs=15.8

Q ss_pred             ccccCcccccccccCCC
Q 045926          259 KLYRCRAIKNCTATCPK  275 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~  275 (302)
                      .++.|+.||.|+.+||+
T Consensus        39 ~~~~CI~CG~C~~~CP~   55 (132)
T d1nekb1          39 GLYECILCACCSTSCPS   55 (132)
T ss_dssp             TTSCCCCCCHHHHTCHH
T ss_pred             hhHHHhHhhhhhhhCcc
Confidence            67899999999999995

>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Thermus thermophilus [TaxId: 274]

Probab=88.82  E-value=0.033  Score=39.10  Aligned_cols=20  Identities=35%  Similarity=0.720  Sum_probs=17.2

Q ss_pred             cccccCcccCcccCCCCCcc
Q 045926          200 DGLYECILCACCTTSCPSYW  219 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~  219 (302)
                      .+..+||.||.|+.+||+..
T Consensus        34 id~~~Ci~Cg~C~~~CP~~A   53 (77)
T d1h98a_          34 IHPEECIDCGACVPACPVNA   53 (77)
T ss_dssp             ECTTTCCCCCTHHHHCTTCC
T ss_pred             EcHHHCCCcCcCccccCcCc
Confidence            35679999999999999864

>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain V
species: Desulfovibrio africanus [TaxId: 873]

Probab=88.47  E-value=0.055  Score=40.54  Aligned_cols=19  Identities=21%  Similarity=0.518  Sum_probs=16.3

Q ss_pred             cccCcccccccccCCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ...|+.||+|+.+||..+.
T Consensus        18 ~~~Ci~Cg~C~~vCP~~~i   36 (117)
T d2c42a5          18 PENCIQCNQCAFVCPHSAI   36 (117)
T ss_dssp             TTTCCCCCHHHHHCSSCCE
T ss_pred             chhcCCCcChhhhCchhhe
Confidence            4589999999999997663

>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=88.17  E-value=0.074  Score=40.60  Aligned_cols=19  Identities=26%  Similarity=0.885  Sum_probs=16.3

Q ss_pred             ccccCcccCcccCCCCCcc
Q 045926          201 GLYECILCACCTTSCPSYW  219 (302)
Q Consensus       201 ~~~~CI~CG~C~~aCP~~~  219 (302)
                      ....|+.||.|+.+||+..
T Consensus        98 ~~~~Ct~Cg~C~~vCP~gI  116 (133)
T d2bs2b1          98 GVFGCMTLLACHDVCPKNL  116 (133)
T ss_dssp             TGGGCCCCCHHHHHCTTCC
T ss_pred             cchhChhhCCCcccCcCCC
Confidence            4567999999999999764

>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase, second domain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=87.29  E-value=0.044  Score=38.51  Aligned_cols=18  Identities=33%  Similarity=0.863  Sum_probs=15.5

Q ss_pred             cccCcccCcccCCCCCcc
Q 045926          202 LYECILCACCTTSCPSYW  219 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~~~  219 (302)
                      ...|+.||.|+.+||+..
T Consensus        61 ~~~C~~Cg~Cv~vCP~gA   78 (83)
T d3c8ya3          61 DTNCLLCGQCIIACPVAA   78 (83)
T ss_dssp             GSSCCCCCHHHHHCSSTT
T ss_pred             ccccccCCHHHhhCCCCc
Confidence            346999999999999865

>d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=86.67  E-value=0.057  Score=41.96  Aligned_cols=17  Identities=29%  Similarity=0.733  Sum_probs=15.7

Q ss_pred             ccccCcccccccccCCC
Q 045926          259 KLYRCRAIKNCTATCPK  275 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~  275 (302)
                      .++.|+.||.|+.+||+
T Consensus        39 ~~~~CI~Cg~C~~~CP~   55 (138)
T d1kf6b1          39 QFSGCINCGLCYAACPQ   55 (138)
T ss_dssp             GGGCCCCCCHHHHHCHH
T ss_pred             HHHHHHHhChhhccCcc
Confidence            67899999999999996

>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: 7-Fe ferredoxin
domain: Ferredoxin
species: Bacillus schlegelii [TaxId: 1484]

Probab=86.02  E-value=0.12  Score=36.00  Aligned_cols=17  Identities=24%  Similarity=0.655  Sum_probs=15.6

Q ss_pred             ccCccc--ccccccCCCCC
Q 045926          261 YRCRAI--KNCTATCPKGL  277 (302)
Q Consensus       261 ~~C~~C--g~C~~vCP~gI  277 (302)
                      ..|++|  |.|+.+||+++
T Consensus         6 ~~C~~C~~g~C~~~CP~~A   24 (77)
T d1bc6a_           6 EPCIGTKDASCVEVCPVDC   24 (77)
T ss_dssp             STTTTCCCCSSTTTCTTCC
T ss_pred             ccCCCccCcchhhhCCCCC
Confidence            479999  89999999997

>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: NADH-quinone oxidoreductase chain 9, Nqo9
species: Thermus thermophilus [TaxId: 274]

Probab=85.89  E-value=0.098  Score=41.13  Aligned_cols=20  Identities=30%  Similarity=0.556  Sum_probs=17.0

Q ss_pred             ccccCcccccccccCCCCCC
Q 045926          259 KLYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~gI~  278 (302)
                      +...|+.||.|+.+||.++.
T Consensus        24 ~~ekCI~C~~C~~~CP~~~i   43 (154)
T d2fug91          24 GLEKCIGCSLCAAACPAYAI   43 (154)
T ss_dssp             SCBSCCCCTHHHHHCSSCCE
T ss_pred             CcccCcCCCcHHhhcCCcce
Confidence            45689999999999998763

>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin A
species: Thermotoga maritima [TaxId: 2336]

Probab=85.31  E-value=0.084  Score=34.61  Aligned_cols=19  Identities=21%  Similarity=0.520  Sum_probs=16.3

Q ss_pred             cccCcccccccccCCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGLD  278 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI~  278 (302)
                      ...|++||.|+.+||..+.
T Consensus         7 ~~~C~~Cg~C~~~cP~~~~   25 (59)
T d1vjwa_           7 ADACIGCGVCENLCPDVFQ   25 (59)
T ss_dssp             TTTCCCCCHHHHHCTTTEE
T ss_pred             HHHCCCCCCChHhCchheE
Confidence            3589999999999997764

>d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Globin-like
superfamily: alpha-helical ferredoxin
family: Dihydropyrimidine dehydrogenase, N-terminal domain
domain: Dihydropyrimidine dehydrogenase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.71  E-value=0.18  Score=41.02  Aligned_cols=30  Identities=27%  Similarity=0.580  Sum_probs=26.2

Q ss_pred             ccccCcccc--cccccCCCCCCHHHHHHHHHH
Q 045926          259 KLYRCRAIK--NCTATCPKGLDPADAIHKMKT  288 (302)
Q Consensus       259 ~~~~C~~Cg--~C~~vCP~gI~~~~~I~~lR~  288 (302)
                      ...+|..|+  -|+..||.++++.+.|..++.
T Consensus        74 EA~RCl~C~~ppC~~aCP~~~dIp~~i~~i~~  105 (182)
T d1gtea1          74 EAMRCLKCADAPCQKSCPTHLDIKSFITSISN  105 (182)
T ss_dssp             HHHHSCCCTTCHHHHTSTTCCCHHHHHHHHHT
T ss_pred             HHHHhhCCCCCCcCCCCCCCCCHHHHHHHHHc
Confidence            356899998  799999999999999988764

>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Desulfovibrio gigas [TaxId: 879]

Probab=82.60  E-value=0.12  Score=33.75  Aligned_cols=17  Identities=29%  Similarity=0.747  Sum_probs=14.8

Q ss_pred             ccCcccccccccCCCCC
Q 045926          261 YRCRAIKNCTATCPKGL  277 (302)
Q Consensus       261 ~~C~~Cg~C~~vCP~gI  277 (302)
                      ..|+.||.|+.+||..+
T Consensus         6 e~CigCg~C~~~CP~~~   22 (58)
T d1fxda_           6 DDCMACEACVEICPDVF   22 (58)
T ss_dssp             TTCCCCCHHHHHCTTTE
T ss_pred             ccCcChhhHHHHcChhh
Confidence            37999999999999654

>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Dihydropyrimidine dehydrogenase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.41  E-value=0.098  Score=42.17  Aligned_cols=16  Identities=31%  Similarity=0.852  Sum_probs=14.3

Q ss_pred             cccCcccCcccCCCCC
Q 045926          202 LYECILCACCTTSCPS  217 (302)
Q Consensus       202 ~~~CI~CG~C~~aCP~  217 (302)
                      ...|+.||.|+.+||+
T Consensus       139 ~~~C~gCg~C~~vCP~  154 (173)
T d1gtea5         139 TDTCTGCTLCLSVCPI  154 (173)
T ss_dssp             CTTCCCCCHHHHHCSS
T ss_pred             hhhCCCcChhHhhCCC
Confidence            3579999999999996

>d2v4jb1 d.58.1.5 (B:209-277) DsrB insert domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: DsrB insert domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=81.87  E-value=0.16  Score=34.74  Aligned_cols=17  Identities=41%  Similarity=0.778  Sum_probs=14.9

Q ss_pred             ccccCcccccccccCCC
Q 045926          259 KLYRCRAIKNCTATCPK  275 (302)
Q Consensus       259 ~~~~C~~Cg~C~~vCP~  275 (302)
                      ...+|.+||+|...||.
T Consensus        46 ~~eRCMyCGNCYT~cp~   62 (69)
T d2v4jb1          46 KNERCMYCGNCYTMCPA   62 (69)
T ss_dssp             CGGGCCCCCHHHHHCTT
T ss_pred             cCCcceecCCccccCCC
Confidence            35699999999999995

>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Fe3S4-ferredoxin PF1909
species: Pyrococcus furiosus [TaxId: 2261]

Probab=81.41  E-value=0.17  Score=33.62  Aligned_cols=18  Identities=22%  Similarity=0.523  Sum_probs=15.3

Q ss_pred             cccCcccccccccCCCCC
Q 045926          260 LYRCRAIKNCTATCPKGL  277 (302)
Q Consensus       260 ~~~C~~Cg~C~~vCP~gI  277 (302)
                      ...|+.||.|+.+||...
T Consensus         8 ~~~Ci~Cg~C~~~CP~~~   25 (66)
T d1sj1a_           8 QDTCIGDAICASLCPDVF   25 (66)
T ss_dssp             TTTCCCCCHHHHHCTTTE
T ss_pred             HHHCCCcChhhhhCCceE
Confidence            358999999999999654

>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Adenylylsulfate reductase B subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.19  E-value=0.12  Score=40.36  Aligned_cols=20  Identities=25%  Similarity=0.501  Sum_probs=17.1

Q ss_pred             cccccCcccCcccCCCCCcc
Q 045926          200 DGLYECILCACCTTSCPSYW  219 (302)
Q Consensus       200 ~~~~~CI~CG~C~~aCP~~~  219 (302)
                      .+...||.||.|+.+||...
T Consensus        41 ~d~~~C~~C~~C~~~CP~~A   60 (149)
T d1jnrb_          41 REPDMCWECYSCVKMCPQGA   60 (149)
T ss_dssp             SCGGGCCCCCHHHHHCTTCC
T ss_pred             eccccCCCCccccCcCchhe
Confidence            45678999999999999765