Citrus Sinensis ID: 045952


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
MFGCKCFYWNEVNNMSPTEPGTFSLPAPLPTWPQGQGFASGRINLGEIEVCRISRFNFIWSCNLLQSKKKSATFYEPAGIPDGFYSLGHYCQFDSRPLRGFVLVARDLASSEAEGAHTSNLFKSPALQKPLDYTLVWCSDEGGQGNYEGCAFFWLPQPPDGYKSMGFLVTKTPNKPELDEVRCVRDDLTDKCEVHHLIFDAISKFSSSPFSVWSTRPCNRGMLGRGVSVGTFFCSSNWISGQELNIACLKNLDPKLHAMPNCDQIHALIRNYGPTVFFHPDEVYLPSSVSWFFTNGALLYKAGDLVGEAIDPSGSNLPSGGRNDGEFWIDLPSDGGRQIVKHGNMESAKLYVHVKPAVGGTFTDIVMWVFCPFNGPGTLKVGIMNVAFSKIGQHVGDWEHFTLRICNFTGELWSIYFSQHSGGKWVAAYDLEYIEGNKAIVYSSKNGHASFPHPGTYLQGSEILGIGVRNDAARSNLYVDSSIQYELVAAEYLGEGVVAEPSWLQFMRKWGPTIVYDSKTELDKIIKLLPLMIRYSVENAVSKLPLELYGEEGPTGPKEKNNWVGDERG
ccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEEEccEEEEEEccccccccccEEEEccccccccEEEEccEEEcccccccccEEEEEcccccccccccccccccccccccccccEEEEEccccccccccccEEEEEEccccccEEEEEEEEcccccccccEEEEEccccccccccccEEEEcccccccccEEEEcccccccccccccccccEEEEcccccccccHHHHHccccccccccccccccccccEEEccccEEEccccccccccHHHHHHccEEEEEcccccccccccccccccccccccccEEEcccccccccccccccccccEEEEEEEEcccccEEEEEEEEEEEcccccccEEEEEEcccccccccccccEEEEEEEEccccEEEEEEEEEcccccEEEcccccEEEccEEEEEEcccccccccccccccccccccccccEEcccccccEEEccccEEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHcccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccEEEEEcccEEEEEEEEEEEEEEccccccccccEEEEcccccccccEEcccEEccccccccEEEEEEEEcccccccccccccccccccccccccEEEEEEccccccccccccEEEEccccccccEEEEEEEEcccccccHHHEEEEHHHHHHccccccEEEEcccccccccEEEEEEcccccccccccccEEEEEEccccccccccccHHcccccccccccccHHHHHHHHHHHccEEEEccccccccccHHHHHHccccEccccccccccccccccccccccccccEEEEEcccccccHHHccccccccEEEEEEEccccccEEEEEEEEEEcccccEEEEcccEEcccccccccccccEEEEEEEEcccccEEEEEEEccccccEEEHHHHHHccccccEEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccHHHEccccccccccccccHHHHHHHHccccccHHHHHHHHcccHHHHcccccccccccccccccccc
mfgckcfywnevnnmsptepgtfslpaplptwpqgqgfasgrinlgeiEVCRISRFNFIWSCNLLQSKkksatfyepagipdgfyslghycqfdsrplrGFVLVARDLasseaegahtsnlfkspalqkpldytlvwcsdeggqgnyegcaffwlpqppdgyksmgflvtktpnkpeldevrcvrddltdkceVHHLIFDAIskfssspfsvwstrpcnrgmlgrgvsVGTFfcssnwisgqeLNIACLknldpklhampncDQIHALIRnygptvffhpdevylpssvswfftNGALLYKAGdlvgeaidpsgsnlpsggrndgefwidlpsdggrqivkhgnmesaKLYVHvkpavggtfTDIVMWVfcpfngpgtlkVGIMNVAFSKigqhvgdwEHFTLRICNFTGELWSIYFSQhsggkwvaAYDLEYIEGNKAIVYssknghasfphpgtylqgseilgigvrndaarsnlyvdsSIQYELVAAEYlgegvvaepswlqfmrkwgptivydsKTELDKIIKLLPLMIRYSVENAvsklplelygeegptgpkeknnwvgderg
MFGCKCFYWNEVNNMSPTEPGTFSLPAPLPTWPQGQGFASGRINLGEIEVCRISRFNFIWSCNLLQSKKKSATFYEPAGIPDGFYSLGHYCQFDSRPLRGFVLVARDLASSEaegahtsnlfkspalqkPLDYTLVWCSDEGGQGNYEGCAFFWLPQPPDGYKSMGFLVTKtpnkpeldevRCVRDDLTDKCEVHHLIFDaiskfssspfsVWSTRPCNRGMLGRGVSVGTFFCSSNWISGQELNIACLKNLDPKLHAMPNCDQIHALIRNYGPTVFFHPDEVYLPSSVSWFFTNGALLYKAGDLVGEAIDPSGSNLPSGGRNDGEFWIDLPSDGGRQIVKHGNMESAKLYVHVKPAVGGTFTDIVMWVFCPFNGPGTLKVGIMNVAFSKIGQHVGDWEHFTLRICNFTGELWSIYFSQHSGGKWVAAYDLEYIEGNKAIVYSSKNGHASFPHPGTYLQGSEILGIGVRNDAARSNLYVDSSIQYELVAAEYLGEGVVAEPSWLQFMRKWGPTIVYDSKTELDKIIKLLPLMIRYSVENAVSKLPlelygeegptgpkeknnwvgderg
MFGCKCFYWNEVNNMSPTEPGTFSLPAPLPTWPQGQGFASGRINLGEIEVCRISRFNFIWSCNLLQSKKKSATFYEPAGIPDGFYSLGHYCQFDSRPLRGFVLVARDLASSEAEGAHTSNLFKSPALQKPLDYTLVWCSDEGGQGNYEGCAFFWLPQPPDGYKSMGFLVTKTPNKPELDEVRCVRDDLTDKCEVHHLIFDAIskfssspfsvwsTRPCNRGMLGRGVSVGTFFCSSNWISGQELNIACLKNLDPKLHAMPNCDQIHALIRNYGPTVFFHPDEVYLPSSVSWFFTNGALLYKAGDLVGEAIDPSGSNLPSGGRNDGEFWIDLPSDGGRQIVKHGNMESAKLYVHVKPAVGGTFTDIVMWVFCPFNGPGTLKVGIMNVAFSKIGQHVGDWEHFTLRICNFTGELWSIYFSQHSGGKWVAAYDLEYIEGNKAIVYSSKNGHASFPHPGTYLQGSEILGIGVRNDAARSNLYVDSSIQYELVAAEYLGEGVVAEPSWLQFMRKWGPTIVYDSKTELDKIIKLLPLMIRYSVENAVSKLPLELYGEEGPTGPKEKNNWVGDERG
*FGCKCFYWNEVNN********FSLPAPLPTWPQGQGFASGRINLGEIEVCRISRFNFIWSCNLLQSKKKSATFYEPAGIPDGFYSLGHYCQFDSRPLRGFVLVARDLA***********LFKSPALQKPLDYTLVWCSDEGGQGNYEGCAFFWLPQPPDGYKSMGFLVTKTPNKPELDEVRCVRDDLTDKCEVHHLIFDAISKFSSSPFSVWSTRPCNRGMLGRGVSVGTFFCSSNWISGQELNIACLKNLDPKLHAMPNCDQIHALIRNYGPTVFFHPDEVYLPSSVSWFFTNGALLYKAGDLVGEAI***************EFWIDLPSDGGRQIVKHGNMESAKLYVHVKPAVGGTFTDIVMWVFCPFNGPGTLKVGIMNVAFSKIGQHVGDWEHFTLRICNFTGELWSIYFSQHSGGKWVAAYDLEYIEGNKAIVYSSKNGHASFPHPGTYLQGSEILGIGVRNDAARSNLYVDSSIQYELVAAEYLGEGVVAEPSWLQFMRKWGPTIVYDSKTELDKIIKLLPLMIRYSVENAVSKLPLELY********************
*FGCKC*YWNEV*********TFSLPAPLPTWPQGQGFASGRINLGEIEVCRISRFNFIWSCNLLQSKKKSATFYEPAGIPDGFYSLGHYCQFDSRPLRGFVLVARDLASSEAE*********SPALQKPLDYTLVWCSDEG**GNYEGCAFFWLPQPPDGYKSMGFLVTKTPNKPELDEVRCVRDDLTDKCEVHHLIFDAISKFSSSPFSVWSTRPCNRGMLGRGVSVGTFFCSSNWISGQELNIACLKNLD****AMPNCDQIHALIRNYGPTVFFHPDEVYLPSSVSWFFTNGALLYKAG*************LPSGGRNDGEFWIDLPSDG**********ESAKLYVHVKPAVGGTFTDIVMWVFCPFNGPGTLKVGIMNVAFSKIGQHVGDWEHFTLRICNFTGELWSIYFSQHSGGKWVAAYDLEYIEGNKAIVYSSKNGHASFPHPGTYLQGSEILGIGVRNDAARSNLYVDSSIQYELVAAEYLGEGVVAEPSWLQFMRKWGPTIVYDSKTELDKIIKLLPLMIRYSVENAVSKLPLELYGEEGPTGPKEKNNWVGD*R*
MFGCKCFYWNEVNNMSPTEPGTFSLPAPLPTWPQGQGFASGRINLGEIEVCRISRFNFIWSCNLLQSKKKSATFYEPAGIPDGFYSLGHYCQFDSRPLRGFVLVARDLASSEAEGAHTSNLFKSPALQKPLDYTLVWCSDEGGQGNYEGCAFFWLPQPPDGYKSMGFLVTKTPNKPELDEVRCVRDDLTDKCEVHHLIFDAISKFSSSPFSVWSTRPCNRGMLGRGVSVGTFFCSSNWISGQELNIACLKNLDPKLHAMPNCDQIHALIRNYGPTVFFHPDEVYLPSSVSWFFTNGALLYKAGDLVGEAIDPSGSNLPSGGRNDGEFWIDLPSDGGRQIVKHGNMESAKLYVHVKPAVGGTFTDIVMWVFCPFNGPGTLKVGIMNVAFSKIGQHVGDWEHFTLRICNFTGELWSIYFSQHSGGKWVAAYDLEYIEGNKAIVYSSKNGHASFPHPGTYLQGSEILGIGVRNDAARSNLYVDSSIQYELVAAEYLGEGVVAEPSWLQFMRKWGPTIVYDSKTELDKIIKLLPLMIRYSVENAVSKLPLELYGEEGPTGPKEKNNWVGDERG
*FGCKCFYWNEVNNMSPTEPGTFSLPAPLPTWPQGQGFASGRINLGEIEVCRISRFNFIWSCNLLQSKKKSATFYEPAGIPDGFYSLGHYCQFDSRPLRGFVLVARDLAS**************PALQKPLDYTLVWCSDEGGQGNYEGCAFFWLPQPPDGYKSMGFLVTKTPNKPELDEVRCVRDDLTDKCEVHHLIFDAISKFSSSPFSVWSTRPCNRGMLGRGVSVGTFFCSSNWISGQELNIACLKNLDPKLHAMPNCDQIHALIRNYGPTVFFHPDEVYLPSSVSWFFTNGALLYKAGDLVGEAIDPSGSNLPSGGRNDGEFWIDLPSDGGRQIVKHGNMESAKLYVHVKPAVGGTFTDIVMWVFCPFNGPGTLKVGIMNVAFSKIGQHVGDWEHFTLRICNFTGELWSIYFSQHSGGKWVAAYDLEYIEGNKAIVYSSKNGHASFPHPGTYLQGSEILGIGVRNDAARSNLYVDSSIQYELVAAEYLGEGVVAEPSWLQFMRKWGPTIVYDSKTELDKIIKLLPLMIRYSVENAVSKLPLELYGEEGPT**************
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MFGCKCFYWNEVNNMSPTEPGTFSLPAPLPTWPQGQGFASGRINLGEIEVCRISRFNFIWSCNLLQSKKKSATFYEPAGIPDGFYSLGHYCQFDSRPLRGFVLVARDLASSEAEGAHTSNLFKSPALQKPLDYTLVWCSDEGGQGNYEGCAFFWLPQPPDGYKSMGFLVTKTPNKPELDEVRCVRDDLTDKCEVHHLIFDAISKFSSSPFSVWSTRPCNRGMLGRGVSVGTFFCSSNWISGQELNIACLKNLDPKLHAMPNCDQIHALIRNYGPTVFFHPDEVYLPSSVSWFFTNGALLYKAGDLVGEAIDPSGSNLPSGGRNDGEFWIDLPSDGGRQIVKHGNMESAKLYVHVKPAVGGTFTDIVMWVFCPFNGPGTLKVGIMNVAFSKIGQHVGDWEHFTLRICNFTGELWSIYFSQHSGGKWVAAYDLEYIEGNKAIVYSSKNGHASFPHPGTYLQGSEILGIGVRNDAARSNLYVDSSIQYELVAAEYLGEGVVAEPSWLQFMRKWGPTIVYDSKTELDKIIKLLPLMIRYSVENAVSKLPLELYGEEGPTGPKEKNNWVGDERG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query569 2.2.26 [Sep-21-2011]
P53285467 Vacuolar protein sorting- yes no 0.356 0.434 0.258 0.0003
>sp|P53285|VPS62_YEAST Vacuolar protein sorting-associated protein 62 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS62 PE=1 SV=1 Back     alignment and function desciption
 Score = 47.8 bits (112), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 100/267 (37%), Gaps = 64/267 (23%)

Query: 353 HVK--PAV------GGTFTDIVMWVFCPFN-GPGTLKVGIMNVAFSKIGQHVGDWEHFTL 403
           H+K  PAV      G  + D   + F PFN GP  +  G         G HVGDWEH  +
Sbjct: 182 HIKKAPAVLFVVDKGNGWVDAFWFYFYPFNWGPYIMGSG-------PWGNHVGDWEHSLV 234

Query: 404 RICNFTGELWSIYFSQHSGGKWVAAYDLEYIEG----------------NKAIVYSSKNG 447
           R   + GE   ++ S H GG   +AY  E IE                  K +++S++  
Sbjct: 235 RF--YKGEPQYLWMSAHGGG---SAYKFEAIEKIKRLRRVDGKLTNEVIKKPLIFSARGT 289

Query: 448 HASFPHPGTYLQGSEILGIGVRNDAARSNLYVDSSIQYELVAAEYLGEGVV---AEPS-- 502
           HA +   G +        + + +   R  L+ D S+ Y       +GE +    AE +  
Sbjct: 290 HAHYASVGQHAHDVPFFFMPLSDFTDRGPLW-DPSLNYYAYTVT-VGEKMTPCGAEETKM 347

Query: 503 ---WLQFMRKWGP-----------------TIVYDSKTELDKIIKLLPLMIRYSVENAVS 542
              WL F   WG                    +   K  L K ++ + L  R+   N   
Sbjct: 348 GLEWLSFKGAWGDKQLRPRDPRQKWCPFQWKYIDGPKGPLFKNMERVSLCQRFKWWNFWK 407

Query: 543 KLPLELYGEEGPTGPKEKNNWVGDERG 569
             P   Y + G     EKN+ VGD  G
Sbjct: 408 GCPARRYIKRGEGLDAEKNDLVGDNCG 434




Involved in vacuolar protein sorting.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query569
297744222625 unnamed protein product [Vitis vinifera] 0.998 0.908 0.728 0.0
225437979569 PREDICTED: uncharacterized protein LOC10 0.998 0.998 0.728 0.0
147794066569 hypothetical protein VITISV_015561 [Viti 0.998 0.998 0.723 0.0
255571186571 conserved hypothetical protein [Ricinus 0.998 0.994 0.708 0.0
224129536568 predicted protein [Populus trichocarpa] 0.984 0.985 0.707 0.0
225465569568 PREDICTED: uncharacterized protein LOC10 0.991 0.992 0.665 0.0
356540363595 PREDICTED: uncharacterized protein LOC10 0.980 0.937 0.679 0.0
356576727559 PREDICTED: uncharacterized protein LOC10 0.975 0.992 0.641 0.0
255561981569 conserved hypothetical protein [Ricinus 0.989 0.989 0.639 0.0
357481157607 hypothetical protein MTR_5g007860 [Medic 0.987 0.925 0.650 0.0
>gi|297744222|emb|CBI37192.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/568 (72%), Positives = 479/568 (84%)

Query: 1   MFGCKCFYWNEVNNMSPTEPGTFSLPAPLPTWPQGQGFASGRINLGEIEVCRISRFNFIW 60
           MFGC+CF W+ +  + P +  TFSLPAP+PTWPQGQGFASG INLGE+EV +ISRF F+W
Sbjct: 1   MFGCQCFQWSRIAELLPPDTKTFSLPAPIPTWPQGQGFASGVINLGELEVFQISRFEFVW 60

Query: 61  SCNLLQSKKKSATFYEPAGIPDGFYSLGHYCQFDSRPLRGFVLVARDLASSEAEGAHTSN 120
             NL Q KKK  TFY+P GIP+GF+SLGHYCQ + +PL+GFVLVAR++A S  E A   N
Sbjct: 61  GSNLSQDKKKGVTFYKPVGIPNGFFSLGHYCQSNDQPLQGFVLVAREVACSNPEVAQICN 120

Query: 121 LFKSPALQKPLDYTLVWCSDEGGQGNYEGCAFFWLPQPPDGYKSMGFLVTKTPNKPELDE 180
           L KSP LQKPLDYTL+W  D+G + NY+ C +FWLPQPP+GY++MGF+VT  P++PELDE
Sbjct: 121 LDKSPPLQKPLDYTLLWSPDDGSEENYDSCGYFWLPQPPEGYEAMGFVVTNKPDRPELDE 180

Query: 181 VRCVRDDLTDKCEVHHLIFDAISKFSSSPFSVWSTRPCNRGMLGRGVSVGTFFCSSNWIS 240
           VRCVR DLTD CE HHLIF  ISK S  PF VWS RPC+RGMLG+G+  GTFFCSS W  
Sbjct: 181 VRCVRADLTDSCETHHLIFKTISKLSKVPFRVWSLRPCHRGMLGKGIPTGTFFCSSYWNH 240

Query: 241 GQELNIACLKNLDPKLHAMPNCDQIHALIRNYGPTVFFHPDEVYLPSSVSWFFTNGALLY 300
           G+ELNI CLKNL+P LHAMPN DQIHALI++YGPT+FFHP+E YLPSSV+WFF NGALLY
Sbjct: 241 GEELNIVCLKNLNPSLHAMPNLDQIHALIKHYGPTIFFHPNEAYLPSSVAWFFKNGALLY 300

Query: 301 KAGDLVGEAIDPSGSNLPSGGRNDGEFWIDLPSDGGRQIVKHGNMESAKLYVHVKPAVGG 360
           K G+  G+AIDP G NLPSGG+NDGE+WIDLPS   ++ +K GN+ESAKLYVHVKPA GG
Sbjct: 301 KKGESDGQAIDPEGLNLPSGGKNDGEYWIDLPSGDNKRSLKSGNLESAKLYVHVKPASGG 360

Query: 361 TFTDIVMWVFCPFNGPGTLKVGIMNVAFSKIGQHVGDWEHFTLRICNFTGELWSIYFSQH 420
           TFTDIVMWVFCPFNGP TLKVG+MN+A SKIGQHVGDWEHFTLRI NFTGELWSIYFSQH
Sbjct: 361 TFTDIVMWVFCPFNGPATLKVGLMNIALSKIGQHVGDWEHFTLRISNFTGELWSIYFSQH 420

Query: 421 SGGKWVAAYDLEYIEGNKAIVYSSKNGHASFPHPGTYLQGSEILGIGVRNDAARSNLYVD 480
           SGG WV A DLE+IEGNKAIVYSS++GHASFPHPG+Y+QGS  LGIG+RNDAARSNLYVD
Sbjct: 421 SGGIWVNACDLEFIEGNKAIVYSSRSGHASFPHPGSYIQGSSKLGIGIRNDAARSNLYVD 480

Query: 481 SSIQYELVAAEYLGEGVVAEPSWLQFMRKWGPTIVYDSKTELDKIIKLLPLMIRYSVENA 540
           SSI+YE++ AEYLG+GVV EP WLQ+MR+WGP IVYDS++ELDK+I  LP M+RYSVEN 
Sbjct: 481 SSIEYEIIGAEYLGDGVVTEPCWLQYMREWGPNIVYDSRSELDKMINFLPAMVRYSVENI 540

Query: 541 VSKLPLELYGEEGPTGPKEKNNWVGDER 568
            +K PLEL GEEGPTGPKEK NW GDER
Sbjct: 541 FNKFPLELSGEEGPTGPKEKKNWAGDER 568




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437979|ref|XP_002272156.1| PREDICTED: uncharacterized protein LOC100259944 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147794066|emb|CAN77840.1| hypothetical protein VITISV_015561 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255571186|ref|XP_002526543.1| conserved hypothetical protein [Ricinus communis] gi|223534104|gb|EEF35821.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224129536|ref|XP_002320610.1| predicted protein [Populus trichocarpa] gi|222861383|gb|EEE98925.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225465569|ref|XP_002263468.1| PREDICTED: uncharacterized protein LOC100263054 [Vitis vinifera] gi|147791031|emb|CAN61465.1| hypothetical protein VITISV_005001 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356540363|ref|XP_003538659.1| PREDICTED: uncharacterized protein LOC100811439 [Glycine max] Back     alignment and taxonomy information
>gi|356576727|ref|XP_003556481.1| PREDICTED: uncharacterized protein LOC100814522 [Glycine max] Back     alignment and taxonomy information
>gi|255561981|ref|XP_002521999.1| conserved hypothetical protein [Ricinus communis] gi|223538803|gb|EEF40403.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357481157|ref|XP_003610864.1| hypothetical protein MTR_5g007860 [Medicago truncatula] gi|355512199|gb|AES93822.1| hypothetical protein MTR_5g007860 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query569
TAIR|locus:2103020567 AT3G04350 "AT3G04350" [Arabido 0.973 0.977 0.584 2.5e-191
TAIR|locus:2020210572 AT1G04090 "AT1G04090" [Arabido 0.984 0.979 0.587 8.6e-191
TAIR|locus:2172462566 AT5G43950 "AT5G43950" [Arabido 0.977 0.982 0.589 7.9e-188
TAIR|locus:2146188553 AT5G18490 "AT5G18490" [Arabido 0.954 0.981 0.577 1.8e-183
TAIR|locus:2050610583 AT2G44260 "AT2G44260" [Arabido 0.769 0.751 0.462 6.8e-117
TAIR|locus:2050559542 AT2G44230 "AT2G44230" [Arabido 0.752 0.789 0.449 1e-107
TAIR|locus:2078728583 AT3G01870 "AT3G01870" [Arabido 0.750 0.732 0.449 8.8e-102
TAIR|locus:2078723592 AT3G01880 "AT3G01880" [Arabido 0.750 0.721 0.454 6.4e-99
CGD|CAL0001572442 orf19.1800 [Candida albicans ( 0.321 0.414 0.267 3.5e-06
UNIPROTKB|Q59P04442 VPS62 "Potential vacuolar targ 0.321 0.414 0.267 3.5e-06
TAIR|locus:2103020 AT3G04350 "AT3G04350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1854 (657.7 bits), Expect = 2.5e-191, P = 2.5e-191
 Identities = 338/578 (58%), Positives = 431/578 (74%)

Query:     1 MFGCKCFYWN----EVNNMSPTEPGTFSLPAPLPTWPQGQGFASGRINLGEIEVCRISRF 56
             MFGC CFYW+    E+++ S +EP  FSLPAPLP+WPQG+GFA+GRI+LGEIEV +I++F
Sbjct:     1 MFGCDCFYWSRGISELDSES-SEPKPFSLPAPLPSWPQGKGFATGRISLGEIEVVKITKF 59

Query:    57 NFIWSCNLLQSKKKSATFYEPAGIPDGFYSLGHYCQFDSRPLRGFVLVARDLASSEAEGA 116
             + +WS +    K K ATFY    IP+GF+ LGHYCQ   +PLRG+VL AR   +S+A  A
Sbjct:    60 HRVWSSDSSHDKSKRATFYRADDIPEGFHCLGHYCQPTDQPLRGYVLAAR---TSKAVNA 116

Query:   117 HTSNLFKSPALQKPLDYTLVWCSDEGGQGNYEGCAFFWLPQPPDGYKSMGFLVTKTPNKP 176
                  F  P L+KP+ Y+LVW +D    G      +FWLP PP GY++MG +VT  P +P
Sbjct:   117 DD---F--PPLKKPVSYSLVWSADSEKNGG----GYFWLPNPPVGYRAMGVIVTHEPGEP 167

Query:   177 ELDEVRCVRDDLTDKCEVHHLIFDAIXXXXXXXXXXX----XTRPCNRGMLGRGVSVGTF 232
             E +EVRCVR+DLT+ CE   +I +                  TRPC RGML +GV+VG+F
Sbjct:   168 ETEEVRCVREDLTESCETSEMILEVGSSKKSNGSSSPFSVWSTRPCERGMLSQGVAVGSF 227

Query:   233 FCSSNWISGQEL--NIACLKNLDPKLHAMPNCDQIHALIRNYGPTVFFHPDEVYLPSSVS 290
             FC +  +S +    +I CLKNLDP LHAMPN DQ+HA+I ++GPTV+FHP+E Y+PSSV 
Sbjct:   228 FCCTYDLSSERTVPDIGCLKNLDPTLHAMPNLDQVHAVIEHFGPTVYFHPEEAYMPSSVQ 287

Query:   291 WFFTNGALLYKAGDLVGEAIDPSGSNLPSGGRNDGEFWIDLPSDG-GRQIVKHGNMESAK 349
             WFF NGALLY++G   G+ I+ +GSNLP+GG ND +FWIDLP D   +  +K GN+ES++
Sbjct:   288 WFFKNGALLYRSGKSEGQPINSTGSNLPAGGCNDMDFWIDLPEDEEAKSNLKKGNLESSE 347

Query:   350 LYVHVKPAVGGTFTDIVMWVFCPFNGPGTLKVGIMNVAFSKIGQHVGDWEHFTLRICNFT 409
             LYVHVKPA+GGTFTDIVMW+FCPFNGP TLK+G+  +  ++IG+HVGDWEHFT RICNF+
Sbjct:   348 LYVHVKPALGGTFTDIVMWIFCPFNGPATLKIGLFTLPMTRIGEHVGDWEHFTFRICNFS 407

Query:   410 GELWSIYFSQHSGGKWVAAYDLEYIEGNKAIVYSSKNGHASFPHPGTYLQGSEILGIGVR 469
             GELW ++FSQHSGG WV A D+E+++ NK  VYSSK+GHASFPHPG YLQGS  LGIGVR
Sbjct:   408 GELWQMFFSQHSGGGWVDASDIEFVKDNKPAVYSSKHGHASFPHPGMYLQGSSKLGIGVR 467

Query:   470 NDAARSNLYVDSSIQYELVAAEYLGEGVVAEPSWLQFMRKWGPTIVYDSKTELDKIIKLL 529
             ND A+S   VDSS +Y +VAAEYLG+G V EP WLQ+MR+WGPTI YDS +E++KI+ LL
Sbjct:   468 NDVAKSKYIVDSSQRYVIVAAEYLGKGAVIEPCWLQYMREWGPTIAYDSGSEINKIMNLL 527

Query:   530 PLMIRYSVENAVSKLPLELYGEEGPTGPKEKNNWVGDE 567
             PL++R+S+EN V   P+ LYGEEGPTGPKEK+NW GDE
Sbjct:   528 PLVVRFSIENIVDLFPIALYGEEGPTGPKEKDNWEGDE 565




GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
TAIR|locus:2020210 AT1G04090 "AT1G04090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172462 AT5G43950 "AT5G43950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146188 AT5G18490 "AT5G18490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050610 AT2G44260 "AT2G44260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050559 AT2G44230 "AT2G44230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078728 AT3G01870 "AT3G01870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078723 AT3G01880 "AT3G01880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0001572 orf19.1800 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59P04 VPS62 "Potential vacuolar targeting protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query569
pfam06101537 pfam06101, DUF946, Plant protein of unknown functi 0.0
>gnl|CDD|218898 pfam06101, DUF946, Plant protein of unknown function (DUF946) Back     alignment and domain information
 Score =  939 bits (2428), Expect = 0.0
 Identities = 361/553 (65%), Positives = 430/553 (77%), Gaps = 19/553 (3%)

Query: 18  TEPGTFSLPAPLPTWPQGQGFASGRINLGEIEVCRISRFNFIWSCNLLQSKKKSATFYEP 77
            EP TFSLP+PLP+WPQG GFA GRI+LGE+EV +IS F  +W         K ATFYEP
Sbjct: 1   PEPTTFSLPSPLPSWPQGGGFAKGRIDLGELEVSQISTFEKVWRTYEGGPDNKGATFYEP 60

Query: 78  AGIPDGFYSLGHYCQFDSRPLRGFVLVARDLASSEAEGAHTSNLFKSPALQKPLDYTLVW 137
            GIP+GF  LGHYCQ ++RPL G+VLVARD++ S             PAL+ P+DYTLVW
Sbjct: 61  TGIPEGFSCLGHYCQPNNRPLFGWVLVARDVSGSTTN----------PALKPPVDYTLVW 110

Query: 138 CSDEGGQGNYEGCAFFWLPQPPDGYKSMGFLVTKTPNKPELDEVRCVRDDLTDKCEVHHL 197
            +D        GC +FWLP PPDGY+++G +VT +P+KP LDEVRCVR DLTD+CE    
Sbjct: 111 NTDSLKVNQDSGCGYFWLPVPPDGYRAVGLVVTTSPDKPSLDEVRCVRSDLTDQCETDTW 170

Query: 198 IFDAISKFSSSPFSVWSTRPCNRGMLGRGVSVGTFFCSSNWISGQELNIACLKNLDPKLH 257
           I+   S     PF+VWSTRPCNRGM  +GVSVGTFFC +  ++ +   IACLKNLD  L 
Sbjct: 171 IWGTNS-----PFNVWSTRPCNRGMEAKGVSVGTFFCQTGGLNSEPPPIACLKNLDSDLS 225

Query: 258 AMPNCDQIHALIRNYGPTVFFHPDEVYLPSSVSWFFTNGALLYKAGDL-VGEAIDPSGSN 316
           AMPN DQIHALI++YGPT++FHPDE YLPSSVSWFF NGALLYK G+      IDP+GSN
Sbjct: 226 AMPNLDQIHALIQHYGPTIYFHPDEEYLPSSVSWFFKNGALLYKKGEESNPVPIDPNGSN 285

Query: 317 LPSGGRNDGEFWIDLPSD-GGRQIVKHGNMESAKLYVHVKPAVGGTFTDIVMWVFCPFNG 375
           LP GG NDGE+WIDLP D   R+ VK GN+ESA+LYVHVKPA+GGTFTDI MW+FCPFNG
Sbjct: 286 LPQGGSNDGEYWIDLPDDDAARERVKKGNLESAELYVHVKPALGGTFTDIAMWIFCPFNG 345

Query: 376 PGTLKVGIMNVAFSKIGQHVGDWEHFTLRICNFTGELWSIYFSQHSGGKWVAAYDLEYIE 435
           P TLKVG +++   KIG+HVGDWEHFTLRI NF+GELWS+YFSQHSGG+WV A DLE+I+
Sbjct: 346 PATLKVGFISIPLGKIGEHVGDWEHFTLRISNFSGELWSVYFSQHSGGEWVDASDLEFIQ 405

Query: 436 -GNKAIVYSSKNGHASFPHPGTYLQGSEILGIGVRNDAARSNLYVDSSIQYELVAAEYLG 494
            GNK +VYSS +GHASFPHPG YLQGS  LGIG+RNDAA+S+L VDSS +YE+VAAEYLG
Sbjct: 406 GGNKPVVYSSLHGHASFPHPGLYLQGSSKLGIGIRNDAAKSDLVVDSSTRYEIVAAEYLG 465

Query: 495 EGVVAEPSWLQFMRKWGPTIVYDSKTELDKIIKLLPLMIRYSVENAVSKLPLELYGEEGP 554
            GVV EP WL +MR+WGPTIVYDS++EL+K+ K+LP  +R S EN ++KLP+ELYGEEGP
Sbjct: 466 GGVV-EPPWLNYMREWGPTIVYDSRSELEKVEKILPGFLRKSFENIINKLPVELYGEEGP 524

Query: 555 TGPKEKNNWVGDE 567
           TGPKEKNNW GDE
Sbjct: 525 TGPKEKNNWEGDE 537


This family consists of several hypothetical proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown. Length = 537

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 569
PF06101535 DUF946: Plant protein of unknown function (DUF946) 100.0
PF06101535 DUF946: Plant protein of unknown function (DUF946) 98.91
PF05630206 NPP1: Necrosis inducing protein (NPP1); InterPro: 96.1
>PF06101 DUF946: Plant protein of unknown function (DUF946); InterPro: IPR009291 This family consists of several hypothetical proteins, which includes vacuolar protein sorting protein 62 Back     alignment and domain information
Probab=100.00  E-value=1.1e-168  Score=1360.80  Aligned_cols=532  Identities=59%  Similarity=1.101  Sum_probs=508.0

Q ss_pred             CCCCccCCCCCCCCCCCCCcceeeeecCCeeEEEeccceEeeeccCCCCCCcceEEeeecCCCCceEEeccccccCCCCC
Q 045952           19 EPGTFSLPAPLPTWPQGQGFASGRINLGEIEVCRISRFNFIWSCNLLQSKKKSATFYEPAGIPDGFYSLGHYCQFDSRPL   98 (569)
Q Consensus        19 ~~~~f~~p~p~p~~p~g~~fa~g~i~lg~L~V~~~t~FerVW~~~~~~~~~~~~SfWrP~~~P~Gf~~LGdy~~~~~~P~   98 (569)
                      +|++|+||+|||+||||+|||+|+|+||+|+|+++++|+|||++.+++++++++|||||+++|+||++||||||+|++|+
T Consensus         1 ~~~~f~~p~~~~~~p~g~~fa~g~I~lG~L~V~~~s~F~rVW~~~~g~~~~~~vSfwRP~~vP~Gf~~LGdyaqpn~~P~   80 (535)
T PF06101_consen    1 IPTPFSLPAPLPSWPQGGGFASGRIDLGELEVAQVSTFERVWWDKGGGGSRKGVSFWRPVGVPPGFVILGDYAQPNNKPP   80 (535)
T ss_pred             CCccccCCCCCCCCCCCCCceeeeEecCCEEEEEeccceEEEECCCCCCCCCceEEeccCCCCCCceEEeeEeCCCCCCC
Confidence            58999999999999999999999999999999999999999988777788899999999988999999999999999999


Q ss_pred             CceEEEEecCcccccccccccCCCCCCCccCCCCceEEeecCCCCCCCCccceEEEeecCCCCceecceEEeCCCCCCCC
Q 045952           99 RGFVLVARDLASSEAEGAHTSNLFKSPALQKPLDYTLVWCSDEGGQGNYEGCAFFWLPQPPDGYKSMGFLVTKTPNKPEL  178 (569)
Q Consensus        99 ~~~Vlv~rd~~~~~~~~~~~~~~~~~~~l~~P~~f~lVW~~~~sg~~~~~~~~s~W~PvpP~GYvALG~VvT~~~~kP~l  178 (569)
                      +++|||+++.+..          .+.++|++|++|+|||++++++.++.+.++|||+|+||+||+|||||||++++||++
T Consensus        81 ~G~VLva~d~~~~----------~~~p~l~~Pv~f~lVW~~~~~~~~~~~~~~sfW~PvaP~GYvALG~Vvt~~~~~P~l  150 (535)
T PF06101_consen   81 NGFVLVARDVSGS----------PSNPALAKPVDFTLVWSDSGSGGKQDSEDVSFWLPVAPPGYVALGCVVTTGPEKPSL  150 (535)
T ss_pred             cceEEEEecCCcc----------cCCcccCCCCcceEEEecCCCCcccCCccEEEEecCCCCCceEEEEEEeCCCCCCCC
Confidence            9999999986632          257899999999999999987765333479999999999999999999999999999


Q ss_pred             CeEEEeccccCccccccceeeecCCCCCCCCeEEEccCCCCCCCCCCceeeeeEEeecCCCCCccchhhhhcccCCCCCC
Q 045952          179 DEVRCVRDDLTDKCEVHHLIFDAISKFSSSPFSVWSTRPCNRGMLGRGVSVGTFFCSSNWISGQELNIACLKNLDPKLHA  258 (569)
Q Consensus       179 ~~vrCVR~DLt~~~~~~~~iW~~~~sg~~~~~siW~v~p~~rg~~~~gv~~GTF~~~~~~~~~~~~~~~clkn~~~~~~~  258 (569)
                      ++|||||+|||++|+.+++||++.+      |+||++||++|||+++||++|||||+++..+++.+.|+||||++++|++
T Consensus       151 d~vrCVR~DLv~~~~~~~~Iw~~~~------f~vw~vrP~~rG~~~~Gv~vGTF~~~~~~~~~~~~~i~cLkn~~~~l~~  224 (535)
T PF06101_consen  151 DSVRCVRSDLVDQCEFSESIWDSSS------FSVWSVRPCDRGMWAKGVSVGTFFCQSGWSSSEPPPIACLKNLDSSLSA  224 (535)
T ss_pred             ceEEEEchHhcccccccceEEccCC------eEEEecCcccceeecCCCceeeEEeecCCCCCcccChhHhhcCCccccc
Confidence            9999999999999999999997533      9999999999999999999999999999977678999999999999999


Q ss_pred             CCChhhHHHHHHHhCCeEEecCCCccCCCCHHHHHhcCceeeccCCCC-CcccCCCCCCCCCCCCCCCceeeeCCCCCC-
Q 045952          259 MPNCDQIHALIRNYGPTVFFHPDEVYLPSSVSWFFTNGALLYKAGDLV-GEAIDPSGSNLPSGGRNDGEFWIDLPSDGG-  336 (569)
Q Consensus       259 ~P~~~~i~~lv~~yAP~v~Lhs~E~y~Pssv~~f~~n~~l~~~~~~~~-g~~~~~~~snLp~~~~nd~~~wldlp~~~~-  336 (569)
                      ||+++||++||++|||+|||||||+|+||||+|||+|++++|++++.. +++++.+++|||++++||+.||||+|.+.. 
T Consensus       225 mp~~~qi~~li~~YaP~vylhpeE~YlPssV~~Ff~Ng~l~~~~g~~~~~~~i~~~gsnLp~~~~nd~~~~ldl~~~~~~  304 (535)
T PF06101_consen  225 MPNLDQIHALIQKYAPLVYLHPEERYLPSSVEWFFENGALLYKKGNESNPKPIDPNGSNLPQGGTNDGDYWLDLPDDDKN  304 (535)
T ss_pred             CCchHHHHHHHHhhCceEEecCccccCCccHHHHhhCceEEEcCCCccCCeecccccccCCCCCCCCccccccCcccccc
Confidence            999999999999999999999999999999999999999999999875 789999999999999999999999999876 


Q ss_pred             CcccccCcccCcceEEEEEeccCCcEEEEEEEEeccCCCCCcceeeeeeccccccccccccceeeEEEEeCCCCcEeEEE
Q 045952          337 RQIVKHGNMESAKLYVHVKPAVGGTFTDIVMWVFCPFNGPGTLKVGIMNVAFSKIGQHVGDWEHFTLRICNFTGELWSIY  416 (569)
Q Consensus       337 ~~~~~~G~~~~a~~y~~vkp~~g~~~~di~yw~FY~fN~~~~~~~G~~~~~~~~~G~HvGDWEh~tvr~~n~~g~p~~v~  416 (569)
                      +..+++|++++|++|+||||++|+++|||+||+|||||+++++|+|+++|+++++|+|||||||+||||+|++|+|++||
T Consensus       305 ~~~vk~G~l~~a~~yv~Vkp~~Ggt~tDi~~w~FypfNg~~~~~vg~~~~~~~~~G~HvGDWEH~tvR~~n~~g~~~~v~  384 (535)
T PF06101_consen  305 KESVKKGNLESAPAYVHVKPDKGGTFTDIFYWYFYPFNGPARLKVGPINIPLGKFGNHVGDWEHVTVRFSNFDGEPQAVY  384 (535)
T ss_pred             ccccccCCcCCCcEEEEEEEcCCCcEEEEEEEEEecCCCCcccccceeeecccccccccccceeEEEEEECCCCcEEEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCceeecccceee-eCCeeEEEEcCCCCCCCCCCccccCCCcccCccccccccCCCccccCCCceEEEEEeecCC
Q 045952          417 FSQHSGGKWVAAYDLEYI-EGNKAIVYSSKNGHASFPHPGTYLQGSEILGIGVRNDAARSNLYVDSSIQYELVAAEYLGE  495 (569)
Q Consensus       417 ~S~H~~G~~~~~~~le~~-~g~rPvvYsa~gsHa~y~~~G~~~~~~~~l~~g~~~dt~~~~~~wD~~~~~~~~~~~~~~~  495 (569)
                      ||||++|+||+++++|+. .++|||||||+|||||||+||+|+|++.+|++||++|+++++.+||++++|++++++|+++
T Consensus       385 ~S~H~~G~~~~~~~le~~~~~~rPvvYsa~g~Ha~y~~~G~~~~g~~~l~~gi~~D~~~~~~~~D~~~~y~~v~~~y~~~  464 (535)
T PF06101_consen  385 FSQHSGGQWYDYSDLEFIQDGNRPVVYSARGSHANYPSPGTHLQGSPKLGIGIRNDTTDSGPLWDSSLNYEVVAAEYLGS  464 (535)
T ss_pred             eeecCCCceechhhhccccCCCceEEEecCCcccCCCCCcccccCccccCccceecccCCcceEcCCcceEEEeccccCC
Confidence            999999999999999984 5999999999999999999999999998899999999999999999999999999999998


Q ss_pred             ccccCccccccccccCCcccCCChhHHHHHHhhcchhHHHhHHHhhhcCCcccccccCCCCccccCCCcCCC
Q 045952          496 GVVAEPSWLQFMRKWGPTIVYDSKTELDKIIKLLPLMIRYSVENAVSKLPLELYGEEGPTGPKEKNNWVGDE  567 (569)
Q Consensus       496 ~~~~~~~Wl~f~G~WG~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~e~~~~~GPtGP~~K~~w~~de  567 (569)
                      .+. +|+||+|+|+|||+++|+++.|+++++++||++||.+|++|+++||+|+++||||||||+|+||+|||
T Consensus       465 ~~~-ep~WL~y~g~WG~~i~y~~~~e~~~~~~~lp~~~~~~~~~~~~~~p~e~~~eegptgpk~k~~w~gde  535 (535)
T PF06101_consen  465 GVV-EPPWLNYMGRWGPKIVYDSRSEIDKVEKFLPGKLRFSFENIFNKLPNELYGEEGPTGPKEKNNWEGDE  535 (535)
T ss_pred             CCc-CcchhhcccccCCcccCchHHHHHHHHHhChHHHHHHHHHHHHhCcHHhccCCCCCCcccccCCCCCC
Confidence            665 89999999999999999999999999999999999999999999999999999999999999999998



The function of this family is unknown.

>PF06101 DUF946: Plant protein of unknown function (DUF946); InterPro: IPR009291 This family consists of several hypothetical proteins, which includes vacuolar protein sorting protein 62 Back     alignment and domain information
>PF05630 NPP1: Necrosis inducing protein (NPP1); InterPro: IPR008701 This family consists of several NPP1-like necrosis inducing proteins from oomycetes, fungi and bacteria Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query569
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 29/243 (11%), Positives = 59/243 (24%), Gaps = 84/243 (34%)

Query: 108 LASSEAEGAHTSNLFKSPALQKPLDYTLVWCSDEGGQGNYEGCAFFWLPQPPDGYKSMGF 167
           L+  E +     ++  S          L W      +   +   F       + Y    F
Sbjct: 46  LSKEEID-----HIIMSKDAVSGT-LRLFWTLLSKQEEMVQ--KFVEEVLRIN-Y---KF 93

Query: 168 LVTK---TPNKPELDEVRCVRDDLTDKCEVHHLIFDAISKFSSSPFSVWSTRPCNR---- 220
           L++       +P +     +        E    +++    F+   ++V   +P  +    
Sbjct: 94  LMSPIKTEQRQPSMMTRMYI--------EQRDRLYNDNQVFA--KYNVSRLQPYLKLRQA 143

Query: 221 -------------GMLGRGVSV------------GTFFCSSNWIS-GQ----ELNIACLK 250
                        G+LG G +                     W++       E  +  L+
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 251 NL----DPKLHAMP--------NCDQIHALIRNYGPTVFFHP---------DEVYLPSSV 289
            L    DP   +              I A +R                     V    + 
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKPYENCLLVLLNVQNAKAW 259

Query: 290 SWF 292
           + F
Sbjct: 260 NAF 262


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query569
3st1_A214 Necrosis-and ethylene-inducing protein; mpnep2, NL 93.36
3gnz_P213 25 kDa protein elicitor; toxin, necrosi, ethylenei 92.97
>3st1_A Necrosis-and ethylene-inducing protein; mpnep2, NLP family, unknown function, toxin; 1.80A {Moniliophthora perniciosa} Back     alignment and structure
Probab=93.36  E-value=0.15  Score=49.93  Aligned_cols=84  Identities=20%  Similarity=0.194  Sum_probs=52.8

Q ss_pred             cceEEEEEeccCCcEEEEEEEEeccCCCCCcceeeeeeccccccccccccceeeEEEEeCCCCcEeEEEEeecCCCceee
Q 045952          348 AKLYVHVKPAVGGTFTDIVMWVFCPFNGPGTLKVGIMNVAFSKIGQHVGDWEHFTLRICNFTGELWSIYFSQHSGGKWVA  427 (569)
Q Consensus       348 a~~y~~vkp~~g~~~~di~yw~FY~fN~~~~~~~G~~~~~~~~~G~HvGDWEh~tvr~~n~~g~p~~v~~S~H~~G~~~~  427 (569)
                      ..+|+..+=. . ++.-|.|=+|||=..+.           ... -|-=||||+-|-+.|.+.++.+|-+|+|++=.-+.
T Consensus        68 sqvY~R~~~~-~-g~~aimYawYFpKD~~~-----------~g~-GHRHDWE~vVVWidn~~~~i~~vs~S~hg~y~~~~  133 (214)
T 3st1_A           68 AQTYVRSATF-Q-GKTALVYAWYMPKDEIS-----------TGI-GHRHDWEGAVVFLNSDTQQIDGVAASAHGKWRKYP  133 (214)
T ss_dssp             CCEEEEEEEE-T-TEEEEEEEEEEEEEEEE-----------TTE-EEEEEEEEEEEEEETTTCCEEEEEEEETTEEEEEE
T ss_pred             CCcEeEEEEe-C-CEEEEEEEEeccCCccC-----------CCC-CccccceEEEEEEcCCCCeEEEEEeeccCCccccC
Confidence            4678776532 3 34455565566544321           122 47779999999999866788999999996522222


Q ss_pred             cccceeeeCCeeEE-EEcC
Q 045952          428 AYDLEYIEGNKAIV-YSSK  445 (569)
Q Consensus       428 ~~~le~~~g~rPvv-Ysa~  445 (569)
                      ..+..+.+|+||.| |-..
T Consensus       134 ~~~~~~~~Gt~~kv~Y~~~  152 (214)
T 3st1_A          134 NPGGANIDDTHVKLQYSAE  152 (214)
T ss_dssp             SCCGGGEETTEEEEEEEEE
T ss_pred             CCccccccCCeeEEEEEec
Confidence            22333367899865 6543



>3gnz_P 25 kDa protein elicitor; toxin, necrosi, ethyleneinducing, immunityassociated responses, plants; 1.35A {Pythium aphanidermatum} PDB: 3gnu_P Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00