Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 63
smart00883 93
smart00883, Cpn10, Chaperonin 10 Kd subunit
1e-20 cd00320 93
cd00320, cpn10, Chaperonin 10 Kd subunit (cpn10 or
3e-20 PRK00364 95
PRK00364, groES, co-chaperonin GroES; Reviewed
9e-16 COG0234 96
COG0234, GroS, Co-chaperonin GroES (HSP10) [Posttr
2e-15 pfam00166 91
pfam00166, Cpn10, Chaperonin 10 Kd subunit
2e-14 PTZ00414 100
PTZ00414, PTZ00414, 10 kDa heat shock protein; Pro
6e-11
>gnl|CDD|197951 smart00883, Cpn10, Chaperonin 10 Kd subunit
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Score = 76.7 bits (190), Expect = 1e-20
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 4 GKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 60
G+VVAVGPG R NG+ +P+ VK GD VL +Y G EVKL ++Y + + IL +
Sbjct: 37 GEVVAVGPGKRLENGERVPLDVKVGDKVLFGKYAGTEVKLDGEEYLILRESDILAVI 93
The chaperonins are 'helper' molecules required for correct folding and subsequent assembly of some proteins. These are required for normal cell growth, and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10). The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Length = 93
>gnl|CDD|238197 cd00320, cpn10, Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts
Back Show alignment and domain information
Score = 75.6 bits (187), Expect = 3e-20
Identities = 30/57 (52%), Positives = 40/57 (70%)
Query: 4 GKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 60
GKVVAVGPG R+ NG+ +P+SVK GD VL P+Y G EVKL ++Y + + IL +
Sbjct: 37 GKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLDGEEYLILRESDILAVI 93
It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface. Length = 93
>gnl|CDD|178988 PRK00364, groES, co-chaperonin GroES; Reviewed
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Score = 64.4 bits (158), Expect = 9e-16
Identities = 26/57 (45%), Positives = 37/57 (64%)
Query: 4 GKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 60
G+VVAVGPG R NG+ +P+ VK GD VL +Y G EVK+ ++Y + + IL +
Sbjct: 38 GEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKIDGEEYLILRESDILAIV 94
>gnl|CDD|223312 COG0234, GroS, Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
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Score = 63.7 bits (156), Expect = 2e-15
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 4 GKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 60
G+VVAVGPG RD NG+ +P+ VK GD VL +Y G EVK+ ++Y + + IL +
Sbjct: 38 GEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKIDGEEYLILSESDILAIV 94
>gnl|CDD|201050 pfam00166, Cpn10, Chaperonin 10 Kd subunit
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Score = 60.7 bits (148), Expect = 2e-14
Identities = 28/57 (49%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 4 GKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 60
G+VVAVGPGAR+ NG+ +P+ VK GD VL P+Y G EVK+ ++Y + +++ IL +
Sbjct: 36 GEVVAVGPGARN-NGEDVPLEVKVGDKVLFPKYAGTEVKIDGEEYLILKEKDILAVI 91
This family contains GroES and Gp31-like chaperonins. Gp31 is a functional co-chaperonin that is required for the folding and assembly of Gp23, a major capsid protein, during phage morphogenesis. Length = 91
>gnl|CDD|173604 PTZ00414, PTZ00414, 10 kDa heat shock protein; Provisional
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Score = 52.3 bits (125), Expect = 6e-11
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 5/57 (8%)
Query: 4 GKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 60
G VVAV +D + P +VK GDTVLLPE+GG+ VK+ +++ LY ++S+LG L
Sbjct: 47 GTVVAVAAATKD----WTP-TVKVGDTVLLPEFGGSSVKVEGEEFFLYNEDSLLGVL 98
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
63
COG0234 96
GroS Co-chaperonin GroES (HSP10) [Posttranslationa
99.93 PRK00364 95
groES co-chaperonin GroES; Reviewed
99.92 cd00320 93
cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); C
99.91 PF00166 93
Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR0208
99.89 PTZ00414 100
10 kDa heat shock protein; Provisional
99.88 PRK14533 91
groES co-chaperonin GroES; Provisional
99.88 KOG1641 104
consensus Mitochondrial chaperonin [Posttranslatio
99.81 PF08240 109
ADH_N: Alcohol dehydrogenase GroES-like domain; In
94.47 COG1062 366
AdhC Zn-dependent alcohol dehydrogenases, class II
93.78 KOG1197 336
consensus Predicted quinone oxidoreductase [Energy
92.87 KOG0025 354
consensus Zn2+-binding dehydrogenase (nuclear rece
92.58 TIGR03366 280
HpnZ_proposed putative phosphonate catabolism asso
90.74 COG4384 203
Mu-like prophage protein gp45 [Function unknown]
90.58 COG0604 326
Qor NADPH:quinone reductase and related Zn-depende
90.06 TIGR02819 393
fdhA_non_GSH formaldehyde dehydrogenase, glutathio
88.37 cd08230 355
glucose_DH Glucose dehydrogenase. Glucose dehydrog
87.77 KOG0022 375
consensus Alcohol dehydrogenase, class III [Second
87.33 TIGR01202 308
bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl
85.56 COG1064 339
AdhP Zn-dependent alcohol dehydrogenases [General
84.82 PLN02586 360
probable cinnamyl alcohol dehydrogenase
83.83 cd08237 341
ribitol-5-phosphate_DH ribitol-5-phosphate dehydro
82.74 TIGR02822 329
adh_fam_2 zinc-binding alcohol dehydrogenase famil
82.68 PRK10309 347
galactitol-1-phosphate dehydrogenase; Provisional
82.16 cd08281 371
liver_ADH_like1 Zinc-dependent alcohol dehydrogena
81.92 COG3450 116
Predicted enzyme of the cupin superfamily [General
81.45 cd08301 369
alcohol_DH_plants Plant alcohol dehydrogenase. NAD
80.83 PLN02178 375
cinnamyl-alcohol dehydrogenase
80.81 COG1329 166
Transcriptional regulators, similar to M. xanthus
80.69
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
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Probab=99.93 E-value=4.7e-26 Score=138.19 Aligned_cols=62 Identities=44% Similarity=0.804 Sum_probs=59.7
Q ss_pred CceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECCEEEEEEecCCEEEEecc
Q 045997 1 LISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLHD 62 (63)
Q Consensus 1 ~~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DIla~i~~ 62 (63)
.++|+|+|||+|+.+++|+.+|++||+||+|+|++|+|+++++||++|++++++||||++++
T Consensus 35 ~~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~dgeeylil~e~DILAiv~~ 96 (96)
T COG0234 35 PQEGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKIDGEEYLILSESDILAIVEK 96 (96)
T ss_pred CcceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEECCEEEEEechHHeeEEecC
Confidence 37899999999999999999999999999999999999999999999999999999999874
>PRK00364 groES co-chaperonin GroES; Reviewed
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Probab=99.92 E-value=3.8e-25 Score=133.38 Aligned_cols=61 Identities=43% Similarity=0.736 Sum_probs=58.9
Q ss_pred CceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECCEEEEEEecCCEEEEec
Q 045997 1 LISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLH 61 (63)
Q Consensus 1 ~~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DIla~i~ 61 (63)
+++|+|+|||||+++++|++.|++||+||+|+|++|+|++|++++++|+++|++||||+++
T Consensus 35 ~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~~~~~y~iv~~~DIlavi~ 95 (95)
T PRK00364 35 PQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKIDGEEYLILRESDILAIVE 95 (95)
T ss_pred cceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEECCEEEEEEEHHHEEEEeC
Confidence 3689999999999999999999999999999999999999999999999999999999985
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts
Back Show alignment and domain information
Probab=99.91 E-value=3.4e-24 Score=128.77 Aligned_cols=60 Identities=50% Similarity=0.872 Sum_probs=58.0
Q ss_pred CceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECCEEEEEEecCCEEEEe
Q 045997 1 LISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 60 (63)
Q Consensus 1 ~~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DIla~i 60 (63)
+++|+|+|||||+.+++|++.|++||+||+|+|++|+|++|++++++|+++|++||||++
T Consensus 34 ~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~y~i~~~~DIla~i 93 (93)
T cd00320 34 PQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLDGEEYLILRESDILAVI 93 (93)
T ss_pred ceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEECCEEEEEEEHHHEEEEC
Confidence 368999999999999999999999999999999999999999999999999999999985
It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []
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Probab=99.89 E-value=4.8e-23 Score=123.26 Aligned_cols=59 Identities=47% Similarity=0.852 Sum_probs=55.6
Q ss_pred ceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECCEEEEEEecCCEEEEe
Q 045997 2 ISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 60 (63)
Q Consensus 2 ~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DIla~i 60 (63)
++|+|+|||||+.+++|+.+|++|++||+|+|++|+|++++++|++|+++|++||||++
T Consensus 35 ~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~~~~~~~~dIlavi 93 (93)
T PF00166_consen 35 NQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKFDGEKYLIVREDDILAVI 93 (93)
T ss_dssp EEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEETTEEEEEEEGGGEEEEE
T ss_pred ceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEECCEEEEEEEHHHeEEEC
Confidence 68999999999999999999999999999999999999999999999999999999986
These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
>PTZ00414 10 kDa heat shock protein; Provisional
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Probab=99.88 E-value=9.6e-23 Score=124.53 Aligned_cols=56 Identities=46% Similarity=0.836 Sum_probs=52.0
Q ss_pred CceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECCEEEEEEecCCEEEEec
Q 045997 1 LISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLH 61 (63)
Q Consensus 1 ~~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DIla~i~ 61 (63)
.++|+|+|||+|+.+ .|++||+||+|+|++|+|++|+++|++|++++++||||+++
T Consensus 44 p~~g~VvAVG~G~~~-----~~~~Vk~GD~Vl~~~y~Gtevk~dg~ey~i~~e~DILavi~ 99 (100)
T PTZ00414 44 VNEGTVVAVAAATKD-----WTPTVKVGDTVLLPEFGGSSVKVEGEEFFLYNEDSLLGVLQ 99 (100)
T ss_pred CceeEEEEECCCCcc-----ccceecCCCEEEEcCCCCcEEEECCEEEEEEEhHHEEEEec
Confidence 368999999999754 38999999999999999999999999999999999999986
>PRK14533 groES co-chaperonin GroES; Provisional
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Probab=99.88 E-value=1.5e-22 Score=121.74 Aligned_cols=57 Identities=30% Similarity=0.542 Sum_probs=52.6
Q ss_pred CceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECCEEEEEEecCCEEEEecc
Q 045997 1 LISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLHD 62 (63)
Q Consensus 1 ~~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DIla~i~~ 62 (63)
.++|+|+|||||.. ..|++||+||+|+|++|+|++|+++|++|+++|++||||++++
T Consensus 35 ~~~G~VvavG~g~~-----~~~~~Vk~GD~Vl~~~y~g~ev~~~~~~y~iv~e~DILa~i~~ 91 (91)
T PRK14533 35 PMKAEVVAVGKLDD-----EEDFDIKVGDKVIFSKYAGTEIKIDDEDYIIIDVNDILAKIEE 91 (91)
T ss_pred cceEEEEEECCCCc-----cccccccCCCEEEEccCCCeEEEECCEEEEEEEhHhEEEEeeC
Confidence 36899999999862 4689999999999999999999999999999999999999985
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
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Probab=99.81 E-value=2.5e-20 Score=114.26 Aligned_cols=60 Identities=63% Similarity=1.096 Sum_probs=55.6
Q ss_pred CceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECC-EEEEEEecCCEEEEe
Q 045997 1 LISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGD-KKYHLYEDESILGTL 60 (63)
Q Consensus 1 ~~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g-~~y~i~~e~DIla~i 60 (63)
+++|+|+|||||.+++.|+.+|.+||+||+|+||+|+|++|++++ ++|+++|.+|+|+.+
T Consensus 43 ~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpeygGt~V~l~~~~~~~~fr~e~~l~~~ 103 (104)
T KOG1641|consen 43 LLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPEYGGTKVKLGDEDEYHLFRDEDDLLAI 103 (104)
T ss_pred cceEEEEEEcCccccCCCCCcCccccCCCEEEeeccCCcEEeccCCceeEEecchhhhhhh
Confidence 367999999999999999999999999999999999999999984 699999999988865
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1
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Probab=94.47 E-value=0.041 Score=32.31 Aligned_cols=24 Identities=50% Similarity=0.793 Sum_probs=19.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|++.. .+++||+|....
T Consensus 40 ~G~V~~vG~~v~---------~~~~Gd~V~~~~ 63 (109)
T PF08240_consen 40 VGVVVAVGPGVT---------DFKVGDRVVVSP 63 (109)
T ss_dssp EEEEEEESTTTT---------SSGTT-EEEEES
T ss_pred eeeeeeeccccc---------cccccceeeeec
Confidence 599999999763 499999999844
1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Back Show alignment and domain information
Probab=93.78 E-value=0.055 Score=39.65 Aligned_cols=22 Identities=59% Similarity=0.833 Sum_probs=19.4
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|.|.+||+|.. +||+||+|+.
T Consensus 64 AGiVe~VG~gVt---------~vkpGDhVI~ 85 (366)
T COG1062 64 AGIVEAVGEGVT---------SVKPGDHVIL 85 (366)
T ss_pred ccEEEEecCCcc---------ccCCCCEEEE
Confidence 489999999975 7999999984
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Back Show alignment and domain information
Probab=92.87 E-value=0.097 Score=37.68 Aligned_cols=24 Identities=46% Similarity=0.596 Sum_probs=20.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|.|+|||.|.. ..++||+|.|-.
T Consensus 73 aGvVvAvG~gvt---------drkvGDrVayl~ 96 (336)
T KOG1197|consen 73 AGVVVAVGEGVT---------DRKVGDRVAYLN 96 (336)
T ss_pred ceEEEEecCCcc---------ccccccEEEEec
Confidence 589999999975 489999999955
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
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Probab=92.58 E-value=0.3 Score=35.57 Aligned_cols=29 Identities=38% Similarity=0.501 Sum_probs=21.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCC-ceE
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYG-GAE 40 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~-g~e 40 (63)
.|+||+||...+ .+|+||+|+-..-+ |++
T Consensus 86 v~eVv~vGs~vk---------gfk~Gd~VIp~~a~lGtW 115 (354)
T KOG0025|consen 86 VGEVVAVGSNVK---------GFKPGDWVIPLSANLGTW 115 (354)
T ss_pred eEEEEEecCCcC---------ccCCCCeEeecCCCCccc
Confidence 589999998542 39999999976533 554
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase
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Probab=90.74 E-value=0.33 Score=32.49 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=20.2
Q ss_pred eEEEEEECCCeeC-CCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARD-VNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~-~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|++... ..| -.+|+||+|....
T Consensus 7 ~G~V~~vG~~v~~~~~~----~~~~~GdrV~~~~ 36 (280)
T TIGR03366 7 VGEVVALRGGFTPADDG----VPLRLGQRVVWSV 36 (280)
T ss_pred ceEEEEeCCCccccccC----CCCCCCCEEEEcC
Confidence 5999999997631 111 1489999998743
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Back Show alignment and domain information
Probab=90.58 E-value=1.2 Score=30.32 Aligned_cols=40 Identities=20% Similarity=0.344 Sum_probs=28.7
Q ss_pred CCCeEEeeeccCCCEEEeCCCC-------ceEEEECCEEEEEEecCC
Q 045997 16 VNGKFIPVSVKEGDTVLLPEYG-------GAEVKLGDKKYHLYEDES 55 (63)
Q Consensus 16 ~~G~~~p~~vk~GD~Vl~~~y~-------g~ev~~~g~~y~i~~e~D 55 (63)
.++..+|+-+++||+++|..++ |-.|..+-+.|-+....+
T Consensus 87 ~~~syR~~GL~aGeT~iY~~eG~~i~Lteg~~Ie~~ck~~~v~a~~~ 133 (203)
T COG4384 87 QHGSYRITGLKAGETVIYNHEGAKIVLTEGGIIEADCKTLTVNAATG 133 (203)
T ss_pred cCCccccccccCCceEEEeccCcEEEEccCcEEEEeccEEEEecCCc
Confidence 5778889999999999998765 344555566666554444
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Back Show alignment and domain information
Probab=90.06 E-value=0.55 Score=32.99 Aligned_cols=40 Identities=33% Similarity=0.458 Sum_probs=27.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC-C--CceEEEECCEEEEEEecCCE
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE-Y--GGAEVKLGDKKYHLYEDESI 56 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~-y--~g~ev~~~g~~y~i~~e~DI 56 (63)
.|+|+|||++.. ..++||+|.+.. . .|. -.+|..+.++.+
T Consensus 66 aG~V~avG~~V~---------~~~~GdrV~~~~~~~~~G~-----~AEy~~v~a~~~ 108 (326)
T COG0604 66 AGVVVAVGSGVT---------GFKVGDRVAALGGVGRDGG-----YAEYVVVPADWL 108 (326)
T ss_pred EEEEEEeCCCCC---------CcCCCCEEEEccCCCCCCc-----ceeEEEecHHHc
Confidence 599999999864 249999999984 2 221 246666665443
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent
Back Show alignment and domain information
Probab=88.37 E-value=0.51 Score=33.64 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=19.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|...
T Consensus 70 ~G~V~~vG~~V~---------~~~vGdrV~~~ 92 (393)
T TIGR02819 70 TGEVIEKGRDVE---------FIKIGDIVSVP 92 (393)
T ss_pred EEEEEEEcCccc---------cccCCCEEEEe
Confidence 699999999753 48999999874
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
>cd08230 glucose_DH Glucose dehydrogenase
Back Show alignment and domain information
Probab=87.77 E-value=0.57 Score=32.23 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=18.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++ . .+++||+|+..
T Consensus 66 ~G~V~~vG~~-~---------~~~vGdrV~~~ 87 (355)
T cd08230 66 LGVVEEVGDG-S---------GLSPGDLVVPT 87 (355)
T ss_pred ceEEEEecCC-C---------CCCCCCEEEec
Confidence 5899999986 3 48999999863
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Back Show alignment and domain information
Probab=87.33 E-value=0.6 Score=34.33 Aligned_cols=21 Identities=48% Similarity=0.778 Sum_probs=18.8
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEE
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVL 32 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl 32 (63)
.|.|.+||+|.. .+|+||+|+
T Consensus 70 aGIVESvGegV~---------~vk~GD~Vi 90 (375)
T KOG0022|consen 70 AGIVESVGEGVT---------TVKPGDHVI 90 (375)
T ss_pred eeEEEEecCCcc---------ccCCCCEEe
Confidence 589999999874 699999998
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase
Back Show alignment and domain information
Probab=85.56 E-value=0.95 Score=30.79 Aligned_cols=45 Identities=27% Similarity=0.420 Sum_probs=26.8
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCC-ceEE-EECC--EEEEEEecCCEE
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYG-GAEV-KLGD--KKYHLYEDESIL 57 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~-g~ev-~~~g--~~y~i~~e~DIl 57 (63)
.|+|+++|++. .+++||+|+..... .... ...| .+|++++++.++
T Consensus 67 ~G~V~~vG~~v----------~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~ 115 (308)
T TIGR01202 67 VGRVVEAGPDT----------GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVC 115 (308)
T ss_pred EEEEEEecCCC----------CCCCCCEEEEeCccccccccccCCcccceEEcCHHHce
Confidence 58999999863 37999999963210 0000 0012 477777766543
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Back Show alignment and domain information
Probab=84.82 E-value=0.88 Score=32.98 Aligned_cols=22 Identities=45% Similarity=0.666 Sum_probs=19.2
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|++||++.. .+|+||+|-.
T Consensus 66 vG~V~~vG~~V~---------~~k~GDrVgV 87 (339)
T COG1064 66 VGTVVEVGEGVT---------GLKVGDRVGV 87 (339)
T ss_pred EEEEEEecCCCc---------cCCCCCEEEe
Confidence 599999999864 5999999998
>PLN02586 probable cinnamyl alcohol dehydrogenase
Back Show alignment and domain information
Probab=83.83 E-value=1.2 Score=30.98 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=18.0
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 75 ~G~V~~vG~~v~---------~~~vGdrV~~ 96 (360)
T PLN02586 75 VGIVTKLGKNVK---------KFKEGDRVGV 96 (360)
T ss_pred eEEEEEECCCCC---------ccCCCCEEEE
Confidence 589999998752 4899999984
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase
Back Show alignment and domain information
Probab=82.74 E-value=4.2 Score=28.00 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=16.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|.+ .+++||+|.+..
T Consensus 67 ~G~V~~~g~~-----------~~~vGdrV~~~~ 88 (341)
T cd08237 67 IGVVVSDPTG-----------TYKVGTKVVMVP 88 (341)
T ss_pred EEEEEeeCCC-----------ccCCCCEEEECC
Confidence 5888887752 389999998753
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein
Back Show alignment and domain information
Probab=82.68 E-value=1.5 Score=30.13 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=18.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 65 ~G~V~~vG~~v~---------~~~~Gd~V~~ 86 (329)
T TIGR02822 65 VGEVAGRGADAG---------GFAVGDRVGI 86 (329)
T ss_pred EEEEEEECCCCc---------ccCCCCEEEE
Confidence 689999999752 4899999985
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Back Show alignment and domain information
Probab=82.16 E-value=1.5 Score=29.93 Aligned_cols=23 Identities=43% Similarity=0.589 Sum_probs=18.5
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 62 ~G~V~~vG~~v~---------~~~vGd~V~~~ 84 (347)
T PRK10309 62 SGYVEAVGSGVD---------DLHPGDAVACV 84 (347)
T ss_pred EEEEEEeCCCCC---------CCCCCCEEEEC
Confidence 589999998642 48999999864
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)
Back Show alignment and domain information
Probab=81.92 E-value=1.6 Score=30.31 Aligned_cols=22 Identities=45% Similarity=0.767 Sum_probs=18.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|+.
T Consensus 70 ~G~V~~vG~~v~---------~~~~GdrV~~ 91 (371)
T cd08281 70 AGVVVEVGEGVT---------DLEVGDHVVL 91 (371)
T ss_pred eeEEEEeCCCCC---------cCCCCCEEEE
Confidence 589999998652 4899999986
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Back Show alignment and domain information
Probab=81.45 E-value=4.7 Score=25.16 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=23.3
Q ss_pred EeeeccCCCEEEeCC-CCceEEEECC-EEEEEE
Q 045997 21 IPVSVKEGDTVLLPE-YGGAEVKLGD-KKYHLY 51 (63)
Q Consensus 21 ~p~~vk~GD~Vl~~~-y~g~ev~~~g-~~y~i~ 51 (63)
.|..+++||.++|++ +.|+.-..+. .+++++
T Consensus 82 e~v~~~aGD~~~~~~G~~g~W~V~EtvrK~Yv~ 114 (116)
T COG3450 82 EPVEVRAGDSFVFPAGFKGTWEVLETVRKHYVI 114 (116)
T ss_pred eEEEEcCCCEEEECCCCeEEEEEeeeeEEEEEE
Confidence 578999999999998 8898666554 344444
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase
Back Show alignment and domain information
Probab=80.83 E-value=1.8 Score=29.98 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=18.6
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|+..
T Consensus 65 ~G~V~~vG~~v~---------~~~~GdrV~~~ 87 (369)
T cd08301 65 AGIVESVGEGVT---------DLKPGDHVLPV 87 (369)
T ss_pred ceEEEEeCCCCC---------ccccCCEEEEc
Confidence 589999998652 48999999863
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
>PLN02178 cinnamyl-alcohol dehydrogenase
Back Show alignment and domain information
Probab=80.81 E-value=1.9 Score=30.50 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=18.0
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEe
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLL 33 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~ 33 (63)
.|+|+++|++.. .+++||+|..
T Consensus 69 aG~Vv~vG~~v~---------~~~vGdrV~~ 90 (375)
T PLN02178 69 VGIATKVGKNVT---------KFKEGDRVGV 90 (375)
T ss_pred eEEEEEECCCCC---------ccCCCCEEEE
Confidence 589999998752 4899999974
>COG1329 Transcriptional regulators, similar to M
Back Show alignment and domain information
Probab=80.69 E-value=1.5 Score=29.10 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=23.8
Q ss_pred eeccCCCEEEeCCCCceEEE------ECC--EEEEEEe--cCCEEE
Q 045997 23 VSVKEGDTVLLPEYGGAEVK------LGD--KKYHLYE--DESILG 58 (63)
Q Consensus 23 ~~vk~GD~Vl~~~y~g~ev~------~~g--~~y~i~~--e~DIla 58 (63)
+.+|+||+|+||.++--.|+ +.| .+|+++. .+|...
T Consensus 3 ~~Fk~Gd~VVYP~HGvG~I~~Ieeke~~Ge~~~yyVI~f~~~dm~v 48 (166)
T COG1329 3 MAFKIGDHVVYPAHGVGIIQAIEEKEIAGETLEYYVIDFPQSDMTV 48 (166)
T ss_pred ccccCCCEEEecCCCceeeehhhhHhhcCceeEEEEEEEcCCCcEE
Confidence 57899999999998854443 334 4676654 444443
xanthus CarD [Transcription]
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 63
d1p3ha_ 99
b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium
2e-15 d1we3o_ 96
b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus therm
2e-12 d1aono_ 97
b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia c
6e-12
>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 99
Back Hide information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 61.8 bits (150), Expect = 2e-15
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 3 SGKVVAVGPGARDVNGKF-IPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLH 61
G VVAVGPG D +G+ IP+ V EGDTV+ +YGG E+K ++Y + +L +
Sbjct: 39 EGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVVS 98
>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]} Length = 96
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]
Score = 54.1 bits (130), Expect = 2e-12
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 5 KVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 60
KV+AVG G NG+ +P+ VKEGD V+ +YGG E+++ ++Y + + +L L
Sbjct: 40 KVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVL 95
>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]} Length = 97
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]
Score = 53.3 bits (128), Expect = 6e-12
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE-YGGAEVKLGDKKYHLYEDESILGTL 60
G+V+AVG G NG+ P+ VK GD V+ + YG K+ +++ + + IL +
Sbjct: 37 RGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIV 95
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 63
d1we3o_ 96
Chaperonin-10 (GroES) {Thermus thermophilus [TaxId
99.87 d1p3ha_ 99
Chaperonin-10 (GroES) {Mycobacterium tuberculosis
99.87 d1aono_ 97
Chaperonin-10 (GroES) {Escherichia coli [TaxId: 56
99.86 d1qora1 147
Quinone oxidoreductase {Escherichia coli [TaxId: 5
94.43 d1yb5a1 150
Quinone oxidoreductase {Human (Homo sapiens) [TaxI
94.26 d1f8fa1 194
Benzyl alcohol dehydrogenase {Acinetobacter calcoa
94.24 d1jqba1 177
Bacterial secondary alcohol dehydrogenase {Clostri
94.0 d1e3ja1 178
Ketose reductase (sorbitol dehydrogenase) {Silverl
93.76 d1kola1 201
Formaldehyde dehydrogenase {Pseudomonas putida [Ta
93.62 d1llua1 175
Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax
92.69 d1pl8a1 185
Ketose reductase (sorbitol dehydrogenase) {Human (
92.54 d2jhfa1 198
Alcohol dehydrogenase {Horse (Equus caballus) [Tax
92.03 d1uufa1 179
Hypothetical protein YahK {Escherichia coli [TaxId
91.46 d1vj0a1 184
Hypothetical protein TM0436 {Thermotoga maritima [
91.29 d1h2ba1 171
Alcohol dehydrogenase {Archaeon Aeropyrum pernix [
91.0 d1rjwa1 171
Alcohol dehydrogenase {Bacillus stearothermophilus
90.62 d1p0fa1 198
Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:
90.6 d1cdoa1 199
Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI
89.84 d1e3ia1 202
Alcohol dehydrogenase {Mouse (Mus musculus), class
89.01 d1jvba1 177
Alcohol dehydrogenase {Archaeon Sulfolobus solfata
88.94 d1piwa1 192
Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas
88.26 d2fzwa1 197
Alcohol dehydrogenase {Human (Homo sapiens), diffe
86.61 d1iuza_ 98
Plastocyanin {Ulva pertusa, a sea lettuce [TaxId:
86.36 d1g31a_ 107
GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665
82.34
>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}
Back Hide information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=5.6e-23 Score=121.17 Aligned_cols=60 Identities=38% Similarity=0.755 Sum_probs=58.3
Q ss_pred ceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCceEEEECCEEEEEEecCCEEEEec
Q 045997 2 ISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLH 61 (63)
Q Consensus 2 ~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DIla~i~ 61 (63)
+.|+|+|+|+|+.+.+|...|+.+++||+|+|++|+|++|+++|++|++++++||||+++
T Consensus 37 ~~g~VvavG~g~~~~~g~~~p~~vkvGD~Vl~~~~~g~~v~~~g~~y~ii~e~dIlavie 96 (96)
T d1we3o_ 37 QKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 96 (96)
T ss_dssp SEEEESCCCCCEECTTSCEECCSCCTTCEEEECTTCSEEEECSSCEEEEECTTTEEEEEC
T ss_pred eEEEEeeecceEecCCCCEEEeeEEeCCEEEEccCCCcEEEECCEEEEEEEHHHEEEEeC
Confidence 579999999999999999999999999999999999999999999999999999999986
>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.87 E-value=1.5e-22 Score=120.00 Aligned_cols=61 Identities=43% Similarity=0.784 Sum_probs=56.4
Q ss_pred ceEEEEEECCCeeCCCC-eEEeeeccCCCEEEeCCCCceEEEECCEEEEEEecCCEEEEecc
Q 045997 2 ISGKVVAVGPGARDVNG-KFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLHD 62 (63)
Q Consensus 2 ~~G~VvAVG~G~~~~~G-~~~p~~vk~GD~Vl~~~y~g~ev~~~g~~y~i~~e~DIla~i~~ 62 (63)
+.|+|+|||||+.+.+| ...|+++|+||+|+|++|+|++|+++|++|++++++||||++++
T Consensus 38 ~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~~~~g~~v~~dg~~y~ii~e~dIlavi~~ 99 (99)
T d1p3ha_ 38 QEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK 99 (99)
T ss_dssp EEEEEEEECCCEECSSSSCEECCSCCTTCEEEEECTTCEEEEETTEEEEEEEGGGEEEEEEC
T ss_pred eEEEEEEECCceEcCCCCEecCCeeecCCEEEEcccCceEEEECCEEEEEEEHHHEEEEEeC
Confidence 57999999999987665 46788999999999999999999999999999999999999975
>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=5e-22 Score=116.96 Aligned_cols=60 Identities=30% Similarity=0.486 Sum_probs=56.5
Q ss_pred ceEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCCCce-EEEECCEEEEEEecCCEEEEec
Q 045997 2 ISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGA-EVKLGDKKYHLYEDESILGTLH 61 (63)
Q Consensus 2 ~~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~-ev~~~g~~y~i~~e~DIla~i~ 61 (63)
+.|+|+|||||+..++|+..|+.+|+||+|+|++|+|. .++++|++|++++++||||+++
T Consensus 36 ~~g~VvavG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~~~~~dg~~y~ii~e~dIlavie 96 (97)
T d1aono_ 36 TRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVE 96 (97)
T ss_dssp CEEEEEEECSBCCTTSSCCCBCSCCTTCEEEECCCSSCEEEESSSCEEEEEETTTEEEEEC
T ss_pred eeEEEEEEeeeEEccCCcCccccCCCCCEEEEecccCceEEEECCEEEEEEEHHHEEEEEe
Confidence 68999999999999999999999999999999998775 5789999999999999999997
>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]
Probab=94.43 E-value=0.015 Score=33.61 Aligned_cols=24 Identities=38% Similarity=0.720 Sum_probs=19.7
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|++.. .+|+||+|++..
T Consensus 65 ~G~V~~vG~~v~---------~~~vGdrV~~~~ 88 (147)
T d1qora1 65 AGIVSKVGSGVK---------HIKAGDRVVYAQ 88 (147)
T ss_dssp EEEEEEECTTCC---------SCCTTCEEEESC
T ss_pred ccceeeeeeecc---------cccccceeeeec
Confidence 699999999753 599999998643
>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.26 E-value=0.029 Score=32.61 Aligned_cols=41 Identities=32% Similarity=0.539 Sum_probs=27.0
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC-CCceEEEECCEEEEEEecCCEE
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE-YGGAEVKLGDKKYHLYEDESIL 57 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~-y~g~ev~~~g~~y~i~~e~DIl 57 (63)
.|+|+++|++.. .+++||+|+... ..|. =.+|++++++.++
T Consensus 69 ~G~V~~vG~~v~---------~~~vGdrV~~~~~~~G~-----~ae~~~v~~~~~~ 110 (150)
T d1yb5a1 69 AGVIEAVGDNAS---------AFKKGDRVFTSSTISGG-----YAEYALAADHTVY 110 (150)
T ss_dssp EEEEEEECTTCT---------TCCTTCEEEESCCSSCS-----SBSEEEEEGGGEE
T ss_pred eeeeEeecceee---------ccccCcccccccccccc-----ccccccccccccc
Confidence 599999999752 599999997542 2221 1356666665543
>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.24 E-value=0.018 Score=35.13 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=19.4
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|++.
T Consensus 65 ~G~V~~vG~~v~---------~~~vGDrVv~~ 87 (194)
T d1f8fa1 65 SGIIEAIGPNVT---------ELQVGDHVVLS 87 (194)
T ss_dssp EEEEEEECTTCC---------SCCTTCEEEEC
T ss_pred EEEeeecCccce---------eEccCceeeee
Confidence 599999999753 59999999874
>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.00 E-value=0.021 Score=34.39 Aligned_cols=23 Identities=43% Similarity=0.811 Sum_probs=19.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+|+||+|...
T Consensus 62 ~G~V~~vG~~v~---------~~~vGdrV~v~ 84 (177)
T d1jqba1 62 VGEVVEVGSEVK---------DFKPGDRVIVP 84 (177)
T ss_dssp EEEEEEECTTCC---------SCCTTCEEEEC
T ss_pred eEEeeecccccc---------eecCCCcEEEe
Confidence 599999999853 59999999853
>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=93.76 E-value=0.027 Score=33.35 Aligned_cols=24 Identities=42% Similarity=0.667 Sum_probs=19.8
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|++.. .+|+||+|+...
T Consensus 66 ~G~Vv~vG~~v~---------~~~~GdrV~~~~ 89 (178)
T d1e3ja1 66 SGTVVKVGKNVK---------HLKKGDRVAVEP 89 (178)
T ss_dssp EEEEEEECTTCC---------SCCTTCEEEECC
T ss_pred ceEEEecCcccC---------CCCCCCEEEECc
Confidence 599999999753 499999998643
>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]
Probab=93.62 E-value=0.028 Score=34.45 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=19.4
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+|+||+|...
T Consensus 69 ~G~Vv~vG~~V~---------~~~vGdrV~v~ 91 (201)
T d1kola1 69 TGEVIEKGRDVE---------NLQIGDLVSVP 91 (201)
T ss_dssp EEEEEEECTTCC---------SCCTTCEEECC
T ss_pred eeeeeccccccc---------cccccceeEEe
Confidence 699999999753 59999999854
>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.69 E-value=0.047 Score=32.06 Aligned_cols=23 Identities=57% Similarity=0.823 Sum_probs=19.2
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|.+.
T Consensus 69 ~G~V~~~G~~v~---------~~~~GdrV~~~ 91 (175)
T d1llua1 69 VGYVAAVGSGVT---------RVKEGDRVGIP 91 (175)
T ss_dssp EEEEEEECTTCC---------SCCTTCEEEEC
T ss_pred eEEEEEeCCCcc---------ccccCCEEEec
Confidence 599999999763 47999999864
>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.54 E-value=0.055 Score=32.27 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=19.2
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|.+.
T Consensus 72 ~G~V~~vG~~v~---------~~~~GdrV~~~ 94 (185)
T d1pl8a1 72 SGTVEKVGSSVK---------HLKPGDRVAIE 94 (185)
T ss_dssp EEEEEEECTTCC---------SCCTTCEEEEC
T ss_pred eeeEEEecccee---------eecccccceec
Confidence 589999999753 59999999864
>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.03 E-value=0.075 Score=31.88 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=19.8
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|++.. .+++||+|+...
T Consensus 70 ~G~Vv~vG~~v~---------~~~vGdrV~v~~ 93 (198)
T d2jhfa1 70 AGIVESIGEGVT---------TVRPGDKVIPLF 93 (198)
T ss_dssp EEEEEEECTTCC---------SCCTTCEEEECS
T ss_pred eEEEEecCcccc---------CcCCCCEEEEee
Confidence 699999999753 589999998754
>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]
Probab=91.46 E-value=0.075 Score=31.81 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=19.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|++.. .+++||+|.+..
T Consensus 63 ~G~V~~vG~~V~---------~~~vGdrV~v~~ 86 (179)
T d1uufa1 63 VGRVVAVGDQVE---------KYAPGDLVGVGC 86 (179)
T ss_dssp EEEEEEECTTCC---------SCCTTCEEEECS
T ss_pred cccchhhccccc---------cCCCCCEEEEcc
Confidence 599999999753 589999997543
>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]
Probab=91.29 E-value=0.1 Score=31.48 Aligned_cols=29 Identities=38% Similarity=0.621 Sum_probs=22.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|++..+.++ ..+++||+|....
T Consensus 67 ~G~V~~vG~~v~~~~~----~~~~~Gd~V~~~~ 95 (184)
T d1vj0a1 67 AGRVVEVNGEKRDLNG----ELLKPGDLIVWNR 95 (184)
T ss_dssp EEEEEEESSCCBCTTS----CBCCTTCEEEECS
T ss_pred eeeeeEEecccccccc----ccccceeeeEecc
Confidence 5899999998654432 3689999999754
>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=91.00 E-value=0.11 Score=30.62 Aligned_cols=24 Identities=29% Similarity=0.554 Sum_probs=19.5
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|++.. .+++||+|....
T Consensus 66 ~G~V~~vG~~v~---------~~~~GdrV~~~~ 89 (171)
T d1h2ba1 66 VGYIEEVAEGVE---------GLEKGDPVILHP 89 (171)
T ss_dssp EEEEEEECTTCC---------SCCTTCEEEECS
T ss_pred eeeeecccCCCC---------cCCCCCEEEEcC
Confidence 589999999753 488999998643
>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.62 E-value=0.11 Score=30.13 Aligned_cols=23 Identities=48% Similarity=0.761 Sum_probs=18.8
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. .+++||+|...
T Consensus 64 ~G~Vv~vG~~v~---------~~~vGdrV~~~ 86 (171)
T d1rjwa1 64 VGIVEEVGPGVT---------HLKVGDRVGIP 86 (171)
T ss_dssp EEEEEEECTTCC---------SCCTTCEEEEC
T ss_pred EEEEEEeccccc---------CceeeeEEeec
Confidence 589999998653 58999999854
>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]
Probab=90.60 E-value=0.14 Score=30.91 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=19.6
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|++.. .+++||+|....
T Consensus 70 ~G~Vv~~G~~v~---------~~~~GdrV~~~~ 93 (198)
T d1p0fa1 70 VGVVESIGAGVT---------CVKPGDKVIPLF 93 (198)
T ss_dssp EEEEEEECTTCC---------SCCTTCEEEECS
T ss_pred eeeeeecCcccc---------cCcCCCEEEEEe
Confidence 699999999753 489999998744
>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]
Probab=89.84 E-value=0.18 Score=30.28 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=20.2
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEY 36 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y 36 (63)
.|+|+++|++.. .+++||+|....+
T Consensus 71 ~G~v~~vG~~v~---------~~~~GdrV~~~~~ 95 (199)
T d1cdoa1 71 AGIVESVGPGVT---------EFQPGEKVIPLFI 95 (199)
T ss_dssp EEEEEEECTTCC---------SCCTTCEEEECSS
T ss_pred ceEEEEEcCCCc---------eecCCCEEEEeee
Confidence 699999999753 4899999987543
>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=89.01 E-value=0.22 Score=29.69 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=19.6
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|++.. .+++||+|+...
T Consensus 70 ~G~V~~vG~~V~---------~~~~GdrV~~~~ 93 (202)
T d1e3ia1 70 AGIVESVGPGVT---------NFKPGDKVIPFF 93 (202)
T ss_dssp EEEEEEECTTCC---------SCCTTCEEEECS
T ss_pred ceEEeeecCCce---------eccCCCEEEEEe
Confidence 589999999853 489999998754
>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.94 E-value=0.14 Score=29.85 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=19.1
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPE 35 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 35 (63)
.|+|+++|++.. .+|+||+|....
T Consensus 71 ~G~V~~~g~~v~---------~~~~GdrV~~~~ 94 (177)
T d1jvba1 71 AGKIEEVGDEVV---------GYSKGDLVAVNP 94 (177)
T ss_dssp EEEEEEECTTCC---------SCCTTCEEEECC
T ss_pred EEEEeeeccCcc---------ccccCceEeeee
Confidence 589999998653 589999997643
>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.26 E-value=0.19 Score=30.34 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=18.4
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++... ..|+||+|...
T Consensus 71 ~G~Vv~vG~~v~~--------~~k~GdrV~~~ 94 (192)
T d1piwa1 71 VGKVVKLGPKSNS--------GLKVGQRVGVG 94 (192)
T ss_dssp EEEEEEECTTCCS--------SCCTTCEEEEC
T ss_pred ccchhhccccccc--------ccCCCCeeeEe
Confidence 5999999986421 47999999643
>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=86.61 E-value=0.34 Score=29.03 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=19.3
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLP 34 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~ 34 (63)
.|+|+++|++.. ..++||+|...
T Consensus 69 ~G~V~~vG~~V~---------~~~~GdrV~v~ 91 (197)
T d2fzwa1 69 AGIVESVGEGVT---------KLKAGDTVIPL 91 (197)
T ss_dssp EEEEEEECTTCC---------SCCTTCEEEEC
T ss_pred eeEEEeecCCce---------ecCCCCEEEEc
Confidence 589999999864 57999999864
>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]}
Back Show information, alignment and structure
class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Ulva pertusa, a sea lettuce [TaxId: 3120]
Probab=86.36 E-value=0.31 Score=25.88 Aligned_cols=28 Identities=29% Similarity=0.723 Sum_probs=20.1
Q ss_pred EEEEEECCCeeCCCC--eEEe--eeccCCCEEEeCC
Q 045997 4 GKVVAVGPGARDVNG--KFIP--VSVKEGDTVLLPE 35 (63)
Q Consensus 4 G~VvAVG~G~~~~~G--~~~p--~~vk~GD~Vl~~~ 35 (63)
+++|.||.. +| .+.| +.+++||+|.|..
T Consensus 1 a~~V~vg~~----~g~~~F~P~~i~i~~GdtV~f~n 32 (98)
T d1iuza_ 1 AQIVKLGGD----DGSLAFVPSKISVAAGEAIEFVN 32 (98)
T ss_dssp CEEEEESCT----TSCCSEESSEEEECTTCEEEEEE
T ss_pred CeEEEEecC----CCcEEEeCCEEEECCCCEEEEEE
Confidence 478999862 23 3455 4899999999943
>d1g31a_ b.35.1.1 (A:) GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: GP31 co-chaperonin
species: Bacteriophage T4 [TaxId: 10665]
Probab=82.34 E-value=0.59 Score=26.70 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=20.9
Q ss_pred eEEEEEECCCeeCCCCeEEeeeccCCCEEEeCCC
Q 045997 3 SGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEY 36 (63)
Q Consensus 3 ~G~VvAVG~G~~~~~G~~~p~~vk~GD~Vl~~~y 36 (63)
.|+|++|||.... --.|+||.|+.+.-
T Consensus 44 ~~~viSVG~dVpe-------~~~kvG~~vlLP~G 70 (107)
T d1g31a_ 44 LCVVHSVGPDVPE-------GFCEVGDLTSLPVG 70 (107)
T ss_dssp EEEEEEECTTSCT-------TSCCTTCEEEEEGG
T ss_pred eEEEEEeCCCCCH-------HHhccccEEEccCC
Confidence 6899999996521 15789999999763
