Citrus Sinensis ID: 046012

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATFALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHDHPLIVNGCVFLQGKASSMVAAALAPKPGWK
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccEEEEccccccHHHHHHHHHHccEEEEccccccEEEEcccccccccHHHHccEEEEEccHHHHHHHHcccccccc
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHcccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccEEEEEEccEccHHHHHHHHHccccEEEccccccEEEEcccccccccHHHHccEEEEEcccccccHHHcccccccc
martktaatapsgasaktsrngrlsnAERSAYFARREAAKVLRLVLRGDARRRAVGSIKslvyspsvknkkATFALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALyqtpdvpkpryvrvntLKMDVDSAVLELGKQFvvqkddlvpdllilppgcdlhdhplivngCVFLQGKASSMVAAALAPKPGWK
martktaatapsgasaktsrngrlsnAERSAYFARREAAKVLRlvlrgdarrravgsikslvyspsvknkKATFALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQSALARLLVRNKVKSIEDLmalyqtpdvpkpryVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHDHPLIVNGCVFLQGKASSMVAaalapkpgwk
MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATFALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKddlvpdllilppGCDLHDHPLIVNGCVFLQGKASSMVAAALAPKPGWK
*******************************YFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATFALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHDHPLIVNGCVFLQGKAS**************
*********************************ARREAAKVLRLV********************SVKNKKATFALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHDHPLIVNGCVFLQGKASSMVAAALAPKPG**
***************************ERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATFALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHDHPLIVNGCVFLQGKASSMVAAALAPKPGWK
*****************************SAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATFALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHDHPLIVNGCVFLQGKASSMVAAALAPKP***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATFALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHDHPLIVNGCVFLQGKASSMVAAALAPKPGWK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query244 2.2.26 [Sep-21-2011]
Q96P11 429 Putative methyltransferas yes no 0.758 0.431 0.355 6e-22
Q8K4F6 465 Putative methyltransferas yes no 0.766 0.402 0.344 3e-18
O14039 460 Putative methyltransferas yes no 0.725 0.384 0.323 2e-12
P53972 490 Uncharacterized protein Y yes no 0.848 0.422 0.221 8e-06
>sp|Q96P11|NSUN5_HUMAN Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5 PE=1 SV=2 Back     alignment and function desciption
 Score =  104 bits (259), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 110/211 (52%), Gaps = 26/211 (12%)

Query: 56  GSIKSLVYSPSVKNKKATFALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
           GSIK LVYS + +N K  +ALVC+T ++ +++  V+ SA +L ++ K +  L  +L Y++
Sbjct: 19  GSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVLVYEL 78

Query: 116 LFGQEISLVGDAEKFLM-LHKGAIQSALARLLVRNKVKSIEDLMALYQTPDVPK--PRYV 172
           L G+     G   K L+  H+  +++ LARL V   V   EDL+ +   P      PR+V
Sbjct: 79  LLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV 138

Query: 173 RVNTLKMDVDSAVLEL---------------------GKQFVVQKDDLVPDLLILPPGCD 211
           RVNTLK   D  V                        GK F++  D L+P+LL+ P   D
Sbjct: 139 RVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLL--DPLMPELLVFPAQTD 196

Query: 212 LHDHPLIVNGCVFLQGKASSMVAAALAPKPG 242
           LH+HPL   G + LQ +AS + A  L P PG
Sbjct: 197 LHEHPLYRAGHLILQDRASCLPAMLLDPPPG 227
May have S-adenosyl-L-methionine-dependent methyl-transferase activity.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|Q8K4F6|NSUN5_MOUSE Putative methyltransferase NSUN5 OS=Mus musculus GN=Nsun5 PE=2 SV=2 Back     alignment and function description
>sp|O14039|YEY6_SCHPO Putative methyltransferase C2C4.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.06c PE=3 SV=3 Back     alignment and function description
>sp|P53972|YNC2_YEAST Uncharacterized protein YNL022C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL022C PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
343887284 534 NOL1/NOP2/sun family protein [Citrus uns 1.0 0.456 0.983 1e-135
359476259 508 PREDICTED: putative methyltransferase NS 0.991 0.476 0.770 1e-103
296081680 626 unnamed protein product [Vitis vinifera] 0.991 0.386 0.770 1e-103
224092121 433 predicted protein [Populus trichocarpa] 0.909 0.512 0.739 3e-92
255550109 497 williams-beuren syndrome critical region 0.954 0.468 0.672 1e-86
449447153 509 PREDICTED: putative methyltransferase NS 1.0 0.479 0.624 7e-85
297808641 514 predicted protein [Arabidopsis lyrata su 1.0 0.474 0.629 1e-82
356507034 494 PREDICTED: putative methyltransferase NS 0.909 0.449 0.693 1e-82
356514695 502 PREDICTED: putative methyltransferase NS 0.909 0.442 0.679 3e-80
30690149 567 NOL1/NOP2/sun family protein [Arabidopsi 0.905 0.389 0.675 1e-79
>gi|343887284|dbj|BAK61830.1| NOL1/NOP2/sun family protein [Citrus unshiu] Back     alignment and taxonomy information
 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/244 (98%), Positives = 242/244 (99%)

Query: 1   MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKS 60
           MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKS
Sbjct: 1   MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKS 60

Query: 61  LVYSPSVKNKKATFALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQE 120
           LVYSPSVKNKKAT+ALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQE
Sbjct: 61  LVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQE 120

Query: 121 ISLVGDAEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMD 180
           ISLVGDAEKFLMLHKGAIQ ALA+LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMD
Sbjct: 121 ISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMD 180

Query: 181 VDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHDHPLIVNGCVFLQGKASSMVAAALAPK 240
           VDSAVLELGKQFVVQKDDLVPDLLILPPGCDLH HPLIVNGCVFLQGKASSMVAAALAPK
Sbjct: 181 VDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPK 240

Query: 241 PGWK 244
           PGWK
Sbjct: 241 PGWK 244

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359476259|ref|XP_002279425.2| PREDICTED: putative methyltransferase NSUN5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081680|emb|CBI20685.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224092121|ref|XP_002309481.1| predicted protein [Populus trichocarpa] gi|222855457|gb|EEE93004.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255550109|ref|XP_002516105.1| williams-beuren syndrome critical region protein, putative [Ricinus communis] gi|223544591|gb|EEF46107.1| williams-beuren syndrome critical region protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449447153|ref|XP_004141333.1| PREDICTED: putative methyltransferase NSUN5-like [Cucumis sativus] gi|449529369|ref|XP_004171672.1| PREDICTED: putative methyltransferase NSUN5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297808641|ref|XP_002872204.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318041|gb|EFH48463.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356507034|ref|XP_003522276.1| PREDICTED: putative methyltransferase NSUN5-like [Glycine max] Back     alignment and taxonomy information
>gi|356514695|ref|XP_003526039.1| PREDICTED: putative methyltransferase NSUN5-like [Glycine max] Back     alignment and taxonomy information
>gi|30690149|ref|NP_851079.1| NOL1/NOP2/sun family protein [Arabidopsis thaliana] gi|30690152|ref|NP_197990.2| NOL1/NOP2/sun family protein [Arabidopsis thaliana] gi|26450438|dbj|BAC42333.1| unknown protein [Arabidopsis thaliana] gi|30793929|gb|AAP40417.1| unknown protein [Arabidopsis thaliana] gi|332006150|gb|AED93533.1| NOL1/NOP2/sun family protein [Arabidopsis thaliana] gi|332006151|gb|AED93534.1| NOL1/NOP2/sun family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
TAIR|locus:2179749 567 AT5G26180 "AT5G26180" [Arabido 0.905 0.389 0.635 2.4e-67
ZFIN|ZDB-GENE-040426-2476 483 nsun5 "NOP2/Sun domain family, 0.717 0.362 0.350 9.6e-25
UNIPROTKB|Q96P11 429 NSUN5 "Putative methyltransfer 0.569 0.324 0.375 3e-22
DICTYBASE|DDB_G0267872 680 DDB_G0267872 "NOL1/NOP2/Sun fa 0.565 0.202 0.353 4.2e-22
MGI|MGI:2140844 465 Nsun5 "NOL1/NOP2/Sun domain fa 0.569 0.298 0.361 5.1e-22
POMBASE|SPAC2C4.06c 460 SPAC2C4.06c "tRNA (cytosine-5- 0.75 0.397 0.305 5.4e-14
UNIPROTKB|G4MPG8 557 MGG_05721 "Uncharacterized pro 0.504 0.220 0.312 1.7e-09
CGD|CAL0003354 498 orf19.2604 [Candida albicans ( 0.520 0.255 0.272 2.2e-06
UNIPROTKB|Q5A962 498 CaO19.10135 "Putative uncharac 0.520 0.255 0.272 2.2e-06
SGD|S000004967 490 YNL022C "Putative cytosine 5-m 0.655 0.326 0.223 0.00017
TAIR|locus:2179749 AT5G26180 "AT5G26180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 141/222 (63%), Positives = 168/222 (75%)

Query:    23 RLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATFALVCQTLK 82
             + S+ ERSA +ARREAA +LR VLRGDA RRAV SIKSLV SPSV+NK+ TFALVC+TLK
Sbjct:    87 KFSSLERSALYARREAANILRTVLRGDAERRAVASIKSLVLSPSVRNKRGTFALVCETLK 146

Query:    83 HLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQSAL 142
             +L++IK VLD A++LNSKWKRQE LV+I+ YDILFG++   +GDAEKFLM HK A+ S L
Sbjct:   147 YLTVIKDVLDIANVLNSKWKRQEPLVFIVCYDILFGKDTPSIGDAEKFLMRHKEALLSGL 206

Query:   143 ARLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKXXXXXX 202
             A LLVR KV S++ L+    T  + KPRYVRVNTLKMDVDSAV EL K + VQK      
Sbjct:   207 ATLLVRKKVDSVDQLLGSKLTGHL-KPRYVRVNTLKMDVDSAVQELEKHYTVQKDETVPD 265

Query:   203 XXXXXXGCDLHDHPLIVNGCVFLQGKASSMVAAALAPKPGWK 244
                   G DLH H L+ NG +FLQGKASSMVAAAL P+ GW+
Sbjct:   266 LLVLPPGSDLHAHRLVANGRIFLQGKASSMVAAALQPQAGWE 307
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
ZFIN|ZDB-GENE-040426-2476 nsun5 "NOP2/Sun domain family, member 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q96P11 NSUN5 "Putative methyltransferase NSUN5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0267872 DDB_G0267872 "NOL1/NOP2/Sun family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:2140844 Nsun5 "NOL1/NOP2/Sun domain family, member 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
POMBASE|SPAC2C4.06c SPAC2C4.06c "tRNA (cytosine-5-)-methyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|G4MPG8 MGG_05721 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
CGD|CAL0003354 orf19.2604 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5A962 CaO19.10135 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
SGD|S000004967 YNL022C "Putative cytosine 5-methyltransferase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
COG0144 355 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases 2e-12
PRK14902 444 PRK14902, PRK14902, 16S rRNA methyltransferase B; 1e-08
TIGR00563 426 TIGR00563, rsmB, ribosomal RNA small subunit methy 9e-04
>gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 7/120 (5%)

Query: 126 DAEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAV 185
               F   H   +   L   L        ++  A+      P PR +RVNTLK DV+  +
Sbjct: 46  LRPAFRYSHPEWLVEKLPDALG------EDEAEAIAAALLRPPPRSLRVNTLKADVEELL 99

Query: 186 LELGKQ-FVVQKDDLVPDLLILPPGCDLHDHPLIVNGCVFLQGKASSMVAAALAPKPGWK 244
             L +   + +K  ++ ++L +     +   P    G +++Q +AS + A  L PKPG +
Sbjct: 100 EALEEAGVLDEKPWVLDEVLRIEASGPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGER 159

Length = 355
>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional Back     alignment and domain information
>gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 244
PRK14903 431 16S rRNA methyltransferase B; Provisional 100.0
PRK10901 427 16S rRNA methyltransferase B; Provisional 100.0
PRK14901 434 16S rRNA methyltransferase B; Provisional 100.0
PRK14902 444 16S rRNA methyltransferase B; Provisional 99.97
TIGR00563 426 rsmB ribosomal RNA small subunit methyltransferase 99.97
PRK14904 445 16S rRNA methyltransferase B; Provisional 99.96
KOG2360 413 consensus Proliferation-associated nucleolar prote 99.72
COG0144 355 Sun tRNA and rRNA cytosine-C5-methylases [Translat 99.65
PRK11933 470 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; 99.63
cd00620126 Methyltransferase_Sun N-terminal RNA binding domai 99.59
PF01189 283 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR 99.58
TIGR01951129 nusB transcription antitermination factor NusB. A 99.54
PRK00202137 nusB transcription antitermination protein NusB; R 99.53
cd00619130 Terminator_NusB Transcription termination factor N 99.52
PF01029134 NusB: NusB family; InterPro: IPR006027 This domain 99.49
cd00447129 NusB_Sun RNA binding domain of NusB (N protein-Uti 99.29
TIGR00446 264 nop2p NOL1/NOP2/sun family putative RNA methylase. 99.25
PRK09634207 nusB transcription antitermination protein NusB; P 99.0
KOG1122 460 consensus tRNA and rRNA cytosine-C5-methylase (nuc 98.54
COG0781151 NusB Transcription termination factor [Transcripti 98.53
>PRK14903 16S rRNA methyltransferase B; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-33  Score=260.50  Aligned_cols=204  Identities=19%  Similarity=0.236  Sum_probs=171.7

Q ss_pred             HHHHHHHHHHHHHHccchhhhhhhcc-cccccCCCccCHHHHHHHHHHHHhcHHHHHHHHhhcccccch--hhhhHHHHH
Q 046012           33 FARREAAKVLRLVLRGDARRRAVGSI-KSLVYSPSVKNKKATFALVCQTLKHLSIIKQVLDSASILNSK--WKRQEELVY  109 (244)
Q Consensus        33 ~~R~~A~~iL~~v~~~~~~~~~l~~l-~~l~~~l~~~dr~~~~~LvygvlR~~~~Ld~il~~~~~~~~~--~~~~~~lLr  109 (244)
                      ++|++|+++|.+|..+|.+++.  .+ +.+. .++++|++|+++|||||+|++..||++|+++  ++++  ...++.+||
T Consensus         4 ~~R~~A~~~L~~v~~~~~~~~~--~l~~~~~-~l~~~d~~~~~~lv~gvlr~~~~lD~~i~~~--~~~~~l~~~~r~iLr   78 (431)
T PRK14903          4 NVRLLAYRLLRKYEKEKFIFRE--DVDSVLS-FLDDKDRRFFKELVWGVVRKEELLDWYINQL--LKKKDIPPAVRVALR   78 (431)
T ss_pred             CHHHHHHHHHHHHHhCCCchHH--HHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCHHHHHHHH
Confidence            6799999999999999987743  23 3343 5889999999999999999999999999995  6543  236799999


Q ss_pred             HHHHHHHhcCccccch---hHHHHHHHhh--------------------HHHHHHHHHHHH-----HcCCCCHHHHHHhh
Q 046012          110 ILTYDILFGQEISLVG---DAEKFLMLHK--------------------GAIQSALARLLV-----RNKVKSIEDLMALY  161 (244)
Q Consensus       110 v~~yqll~~~~~p~~a---e~v~~v~r~~--------------------~~l~~s~p~w~~-----~~g~~~~~~~~~~~  161 (244)
                      +|+|||+|++.+|+++   |+|+++++..                    ..+.+++|.|+.     .||.++++++++  
T Consensus        79 ~~~yel~~~~~~p~~aavneaV~lak~~~~~~fVNaVLr~~~r~~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~--  156 (431)
T PRK14903         79 MGAYQLLFMNSVPDYAAVSETVKLVKNENFKKLVNAVLRRLRTVPEPKELHLKYSHPKWLVNYWRSFLPEEAVLRIME--  156 (431)
T ss_pred             HHHHHHHhccCCCcceeHHHHHHHHhccchHHHHHHHHHHHHHhhcchhhhhhhcCcHHHHHHHHHHcCHHHHHHHHH--
Confidence            9999999998669887   8888876421                    012467787765     568777888887  


Q ss_pred             cCCCCCCCceEEEcCCCCCHHHHHHHHcc-cCceeecCCCCCeEEeCC-CCCCCCchhhhcceEEeechhhHHhHHhhCC
Q 046012          162 QTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPP-GCDLHDHPLIVNGCVFLQGKASSMVAAALAP  239 (244)
Q Consensus       162 ~~~~~~~p~~lRVNtlk~s~e~~~~~L~~-g~~~~~~~~~p~~l~l~~-~~~l~~~~~f~~G~~~vQD~aSql~a~~L~p  239 (244)
                      +.+ .+||+++|||++|++++++.+.|++ |+.+++++++|+++++.. ..++..++.|++|+|++||++||+++.+++|
T Consensus       157 ~~~-~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~  235 (431)
T PRK14903        157 WNQ-EPLPTMLRVNSLAITREEVIKILAEEGTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGESSQIVPLLMEL  235 (431)
T ss_pred             Hhc-CCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEECCCCCceEEEcCCCCCcccChHHHCCeEEEECHHHHHHHHHhCC
Confidence            666 7999999999999999999999988 999999999999999875 4568899999999999999999999999999


Q ss_pred             CCCCC
Q 046012          240 KPGWK  244 (244)
Q Consensus       240 ~pG~~  244 (244)
                      +||++
T Consensus       236 ~~g~~  240 (431)
T PRK14903        236 EPGLR  240 (431)
T ss_pred             CCCCE
Confidence            99863

>PRK10901 16S rRNA methyltransferase B; Provisional Back     alignment and domain information
>PRK14901 16S rRNA methyltransferase B; Provisional Back     alignment and domain information
>PRK14902 16S rRNA methyltransferase B; Provisional Back     alignment and domain information
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB Back     alignment and domain information
>PRK14904 16S rRNA methyltransferase B; Provisional Back     alignment and domain information
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed Back     alignment and domain information
>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun Back     alignment and domain information
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins Back     alignment and domain information
>TIGR01951 nusB transcription antitermination factor NusB Back     alignment and domain information
>PRK00202 nusB transcription antitermination protein NusB; Reviewed Back     alignment and domain information
>cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B) Back     alignment and domain information
>PF01029 NusB: NusB family; InterPro: IPR006027 This domain is found in a number of functionally different proteins: NusB a prokaryotic transcription factor involved in antitermination TIM44, the mitochondrial inner membrane translocase subunit RsmB, the 16S rRNA m5C967 methyltransferase NusB is a prokaryotic transcription factor involved in antitermination processes, during which it interacts with the boxA portion of the mRNA nut site Back     alignment and domain information
>cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins Back     alignment and domain information
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase Back     alignment and domain information
>PRK09634 nusB transcription antitermination protein NusB; Provisional Back     alignment and domain information
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] Back     alignment and domain information
>COG0781 NusB Transcription termination factor [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
2b9e_A 309 Human Nsun5 Protein Length = 309 5e-04
>pdb|2B9E|A Chain A, Human Nsun5 Protein Length = 309 Back     alignment and structure 
Iteration: 1

 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 19/93 (20%)
Query: 169 PRYVRVNTLKMDVDSAVLELGKQ-FVVQKXXXXXXXXXXXXG------------------ 209
           PR+VRVNTLK   D  V    +Q F  Q             G                  
Sbjct: 11  PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 70
Query: 210 CDLHDHPLIVNGCVFLQGKASSMVAAALAPKPG 242
            DLH+HPL   G + LQ +AS + A  L P PG
Sbjct: 71  TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPG 103

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
2b9e_A 309 NOL1/NOP2/SUN domain family, member 5 isoform 2; m 7e-18
2yxl_A 450 PH0851 protein, 450AA long hypothetical FMU protei 5e-12
3ajd_A 274 Putative methyltransferase MJ0026; tRNA, M5C, ross 5e-11
1ixk_A 315 Methyltransferase; open beta sheet; 1.90A {Pyrococ 6e-11
3m4x_A 456 NOL1/NOP2/SUN family protein; mtase domain, PUA do 3e-09
1sqg_A 429 SUN protein, FMU protein; rossmann-fold, mixed bet 4e-09
3m6w_A 464 RRNA methylase; rRNA methyltransferase, 5-methylcy 5e-09
2frx_A 479 Hypothetical protein YEBU; rossmann-type S-adenosy 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309 Back     alignment and structure
 Score = 80.0 bits (198), Expect = 7e-18
 Identities = 35/100 (35%), Positives = 44/100 (44%), Gaps = 19/100 (19%)

Query: 164 PDVPKPRYVRVNTLKMDVDSAVLELGKQFV-------------------VQKDDLVPDLL 204
           P    PR+VRVNTLK   D  V    +Q                        D L+P+LL
Sbjct: 6   PASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELL 65

Query: 205 ILPPGCDLHDHPLIVNGCVFLQGKASSMVAAALAPKPGWK 244
           + P   DLH+HPL   G + LQ +AS + A  L P PG  
Sbjct: 66  VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSH 105
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450 Back     alignment and structure
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Length = 274 Back     alignment and structure
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315 Back     alignment and structure
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456 Back     alignment and structure
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Length = 429 Back     alignment and structure
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Length = 464 Back     alignment and structure
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
2yxl_A 450 PH0851 protein, 450AA long hypothetical FMU protei 99.97
1sqg_A 429 SUN protein, FMU protein; rossmann-fold, mixed bet 99.97
3d3b_A141 Protein NUSB, N utilization substance protein B; N 99.62
1ixk_A 315 Methyltransferase; open beta sheet; 1.90A {Pyrococ 99.61
1tzv_A142 NUSB protein, N utilization substance protein B ho 99.61
3r2d_A149 Protein NUSB, N utilization substance protein B; c 99.6
2b9e_A 309 NOL1/NOP2/SUN domain family, member 5 isoform 2; m 99.53
3m6w_A 464 RRNA methylase; rRNA methyltransferase, 5-methylcy 99.53
2frx_A 479 Hypothetical protein YEBU; rossmann-type S-adenosy 99.51
1eyv_A156 NUSB protein, N-utilizing substance protein B homo 99.48
3ajd_A 274 Putative methyltransferase MJ0026; tRNA, M5C, ross 99.38
3m4x_A 456 NOL1/NOP2/SUN family protein; mtase domain, PUA do 99.33
4fzv_A 359 Putative methyltransferase NSUN4; mterf fold, meth 98.49
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Back     alignment and structure
Probab=99.97  E-value=3.3e-31  Score=245.00  Aligned_cols=204  Identities=16%  Similarity=0.125  Sum_probs=167.9

Q ss_pred             hhHHHHHHHHHHHHHHccchhhhhhhcc-cccc-cCCCc-cCHHHHHHHHHHHHhcHHHHHHHHhhcccccchhh----h
Q 046012           31 AYFARREAAKVLRLVLRGDARRRAVGSI-KSLV-YSPSV-KNKKATFALVCQTLKHLSIIKQVLDSASILNSKWK----R  103 (244)
Q Consensus        31 ~~~~R~~A~~iL~~v~~~~~~~~~l~~l-~~l~-~~l~~-~dr~~~~~LvygvlR~~~~Ld~il~~~~~~~~~~~----~  103 (244)
                      .+++|+.|+++|.+|..++.+++.  .+ ..+. ..+++ +||+++++|||||+||+..||++|+++  ++++..    .
T Consensus        10 ~~~~R~~A~~~L~~v~~~~~~~~~--~l~~~~~~~~l~~~~dr~~~~~lv~gvlr~~~~ld~~i~~~--~~~~~~~~~~~   85 (450)
T 2yxl_A           10 IPPKGIRAIIEAIRLGEIIKPSQY--AKREAFKKHDVEEAWLNRVLTMIFYDIMKKQGLIDKVIKEI--VGVTPLILDPW   85 (450)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSSTHH--HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HSSCGGGSCHH
T ss_pred             cchHHHHHHHHHHHHHhcCCcHHH--HHHHHHHhccCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHh--ccCChhhcCHH
Confidence            457999999999999988877654  22 3343 45788 999999999999999999999999995  554422    4


Q ss_pred             hHHHHHHHHHHHHhcCccccch-------hHHHHHHHhh----------------------------HHHHHHHHHHHH-
Q 046012          104 QEELVYILTYDILFGQEISLVG-------DAEKFLMLHK----------------------------GAIQSALARLLV-  147 (244)
Q Consensus       104 ~~~lLrv~~yqll~~~~~p~~a-------e~v~~v~r~~----------------------------~~l~~s~p~w~~-  147 (244)
                      ++.+||+++|||+|  ++|+++       |+|++++++.                            ..+++++|.|+. 
T Consensus        86 ~~~iLrla~yell~--~ip~~~ain~~~~eaVelak~~~~~~~~~fvNgvL~~~~r~~~~~~~~~~~~~~~~~~P~w~~~  163 (450)
T 2yxl_A           86 LRAALRVAVDIALF--HDPSSQTIKNLRWKASDFISSRTHPYVGMYFWDLLDKIFEYKPNPKNELEELEWKYLAPSWLIE  163 (450)
T ss_dssp             HHHHHHHHHHHHHH--SCBCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCCCCCCSHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHhc--CCCchHHhccccHHHHHHHHhccccccccchHHHHHHHhhccccccchhhhhhhHhcCcHHHHH
Confidence            58899999999999  489875       6777776531                            012456777766 


Q ss_pred             ----HcCCCCHHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cCceeecCCCCCeEEeCCCCCCCCchhhhcce
Q 046012          148 ----RNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHDHPLIVNGC  222 (244)
Q Consensus       148 ----~~g~~~~~~~~~~~~~~~~~~p~~lRVNtlk~s~e~~~~~L~~-g~~~~~~~~~p~~l~l~~~~~l~~~~~f~~G~  222 (244)
                          .|| ++++++++  +.+..+||+++|||++|++++++.+.|++ |+.+.+++++|+++.+.++.++..++.|.+|+
T Consensus       164 ~~~~~~g-~~~~~~~~--a~~~~~~~~~~Rvn~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  240 (450)
T 2yxl_A          164 RVKGILG-DETEDFFR--SVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGK  240 (450)
T ss_dssp             HHHHHHG-GGHHHHHH--HHHCCCCEEEEEECTTTCCHHHHHHHHHHTTCCEEECSSCTTEEEEESCCCTTSCHHHHTTS
T ss_pred             HHHHHhh-HHHHHHHH--hcCCCCCCEEEEEcCCCCCHHHHHHHHHhCCccceecCccCceEEeCCCCCcccCchhhCce
Confidence                568 77888887  54305899999999999999999999988 99999999999999996556899999999999


Q ss_pred             EEeechhhHHhHHhhCCCCCC
Q 046012          223 VFLQGKASSMVAAALAPKPGW  243 (244)
Q Consensus       223 ~~vQD~aSql~a~~L~p~pG~  243 (244)
                      +++||.+||+++.+++++||+
T Consensus       241 ~~~qd~~s~l~~~~l~~~~g~  261 (450)
T 2yxl_A          241 IIVQEEASAVASIVLDPKPGE  261 (450)
T ss_dssp             EEECCHHHHHHHHHHCCCTTC
T ss_pred             EEecCchhHHHHHhcCCCCcC
Confidence            999999999999999999986
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Back     alignment and structure
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A Back     alignment and structure
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Back     alignment and structure
>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A* Back     alignment and structure
>3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* 4eya_A Back     alignment and structure
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Back     alignment and structure
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Back     alignment and structure
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Back     alignment and structure
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1 Back     alignment and structure
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Back     alignment and structure
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Back     alignment and structure
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 244
d2b9ea1 293 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) 3e-10
d1ixka_ 313 c.66.1.38 (A:) Hypothetical methyltransferase PH13 3e-07
d1sqga2 284 c.66.1.38 (A:145-428) Ribosomal RNA small subunit 4e-05
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} Length = 293 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 3e-10
 Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 19/95 (20%)

Query: 169 PRYVRVNTLKMDVDSAVLELGKQFV-------------------VQKDDLVPDLLILPPG 209
           PR+VRVNTLK   D  V    +Q                        D L+P+LL+ P  
Sbjct: 3   PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 62

Query: 210 CDLHDHPLIVNGCVFLQGKASSMVAAALAPKPGWK 244
            DLH+HPL   G + LQ +AS + A  L P PG  
Sbjct: 63  TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSH 97
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 313 Back     information, alignment and structure
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 284 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
d1ixka_ 313 Hypothetical methyltransferase PH1374 {Archaeon Py 99.77
d1sqga2 284 Ribosomal RNA small subunit methyltransferase B, R 99.75
d2b9ea1 293 NOL1R {Human (Homo sapiens) [TaxId: 9606]} 99.59
d1sqga1140 Ribosomal RNA small subunit methyltransferase B, R 99.58
d1ey1a_139 Antitermination factor NusB {Escherichia coli [Tax 99.31
d1tzva_141 Antitermination factor NusB {Thermotoga maritima [ 99.29
d1eyva_131 Antitermination factor NusB {Mycobacterium tubercu 99.21
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=3e-19  Score=155.54  Aligned_cols=103  Identities=25%  Similarity=0.358  Sum_probs=89.8

Q ss_pred             HHHHHHHHH-----HHcCCCCHHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cCceeecCCCCCeEEeCC-CC
Q 046012          138 IQSALARLL-----VRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPP-GC  210 (244)
Q Consensus       138 l~~s~p~w~-----~~~g~~~~~~~~~~~~~~~~~~p~~lRVNtlk~s~e~~~~~L~~-g~~~~~~~~~p~~l~l~~-~~  210 (244)
                      +++++|+|+     ..||+ +++++++  +++ .++|+|+||||+|++++++++.|++ |+.+++++++|+++.+.. ..
T Consensus        10 ~~~~~p~wl~~~~~~~~Ge-e~~~l~~--a~~-~~~p~~iRvN~~k~~~e~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~   85 (313)
T d1ixka_          10 LRLGYSKLFADRYFQLWGE-RAIRIAE--AME-KPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPF   85 (313)
T ss_dssp             HHTTCCHHHHHHHHHHHTT-HHHHHHH--HTT-SCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEETTEEEEEEEEECSS
T ss_pred             HHcCCCHHHHHHHHHHhhH-HHHHHHH--HcC-CCCCeEEEEcCCcCCHHHHHHHHHhCCCceEECCCCcchhhhccCCC
Confidence            445555555     46795 5788888  766 6999999999999999999999999 999999999999998864 45


Q ss_pred             CCCCchhhhcceEEeechhhHHhHHhhCCCCCCC
Q 046012          211 DLHDHPLIVNGCVFLQGKASSMVAAALAPKPGWK  244 (244)
Q Consensus       211 ~l~~~~~f~~G~~~vQD~aSql~a~~L~p~pG~~  244 (244)
                      ++..+++|++|+|+|||+|||+++++|+|+||++
T Consensus        86 ~l~~~~~~~~G~~~vQD~aS~l~~~~l~~~~g~~  119 (313)
T d1ixka_          86 SITSTPEFLTGLIYIQEASSMYPPVALDPKPGEI  119 (313)
T ss_dssp             CGGGSHHHHTTSEEECCHHHHHHHHHHCCCTTCE
T ss_pred             ccccCHhhhhceEEEecccccchhhcccCCccce
Confidence            7999999999999999999999999999999974
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sqga1 a.79.1.3 (A:5-144) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure