Citrus Sinensis ID: 046013

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MATPATLPISNPQTNTTTTTTQTQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPINSGFLSFLGGAASAAAPSVAARV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccEEEEccEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccccccEEEEcccccccccccEEEcc
Coil and Loop (DISEMBL)
matpatlpisnpqtnttttttqtqapiatPAFRAFLSRLSSSIRYGFSQRRHWSELvdrtamsrpdSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLylfrpsdqpvvlfgrtfsdretlgALVVLTIVVVFLTSVGSLLISALMVGAAIVCAhgafrvpedlfldeqepinsgflsflggaasaaapsVAARV
Flexible Loop (DISEMBL)
matpatlpisnpqtnttttttqtqapiaTPAFRAFLSRLSSSirygfsqrrhwselvdrtamsrpDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPINSGFLSFLGGAASAAapsvaarv
Low Complexity Region (SEG)
MATPATLPISNpqtnttttttqtqapiatpaFRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTllglvlafsllshpfsllvllcllGAWIFLYLFRPSDQPVVLFGRTFSDREtlgalvvltivvvfltsvGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPINsgflsflggaasaaapsvaaRV
Disordered region (IsUnstruct)
******************************AFRAFLSRLSSSIRYGFSQRRHWSELVDR********LAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPINSGFLSFLGG*************
Disordered Region (DISOPRED)
******L*************************RAFLSRLSSSIRY*FSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPINSGFLSFLG**************
Disordered Region (DISEMBL)
MATPATLPISNPQTNTTTTTTQTQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPINSGFLSFLGGA************
Disordered Region (DISPRO)
***************************ATPAFRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPINSGFLSFLGGAASAAAPSVAAR*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATPATLPISNPQTNTTTTTTQTQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPINSGFLSFLGGAASAAAPSVAARV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
O80915	220	PRA1 family protein B4 OS	yes	no	0.934	0.913	0.615	6e-76
Q9LYN0	209	PRA1 family protein B1 OS	no	no	0.902	0.928	0.72	1e-73
Q9FLB6	217	PRA1 family protein B3 OS	no	no	0.911	0.903	0.75	5e-71
Q9SIY7	213	PRA1 family protein B2 OS	no	no	0.911	0.920	0.696	2e-64
Q9M012	223	PRA1 family protein B5 OS	no	no	0.902	0.869	0.577	2e-64
Q9LYQ4	216	PRA1 family protein B6 OS	no	no	0.832	0.828	0.568	2e-47
Q9C889	189	PRA1 family protein F2 OS	no	no	0.711	0.809	0.412	4e-27
Q9LIC7	188	PRA1 family protein F4 OS	no	no	0.790	0.904	0.380	2e-25
Q9LIC6	188	PRA1 family protein F3 OS	no	no	0.706	0.808	0.415	5e-24
Q9FRR1	209	PRA1 family protein E OS=	no	no	0.688	0.708	0.344	8e-21

>sp|O80915|PR1B4_ARATH PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1

 Score =  283 bits (724), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 125/203 (61%), Positives = 170/203 (83%), Gaps = 2/203 (0%)

Query: 2   ATPATLPISNPQT--NTTTTTTQTQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDR 59
           + P  LPISNPQT  +   ++ ++Q PIATPAFR F+++++ +++ G S+RR W+EL DR
Sbjct: 4   SAPPVLPISNPQTVPSAAPSSVESQPPIATPAFRNFINQITETVKNGLSKRRPWAELADR 63

Query: 60  TAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLY 119
           +A+S+P+S+++A  RIRKN SYFKVNY+T+   ++ FSL++HPFSL+ LLCLL +W+FLY
Sbjct: 64  SALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLY 123

Query: 120 LFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFR 179
           LFRP+DQP+VLFGRTFSDRETLG L++ +I V+FLT VGS+L+SA+M+G A++CAHGAFR
Sbjct: 124 LFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFR 183

Query: 180 VPEDLFLDEQEPINSGFLSFLGG 202
            PEDLFLDEQEP  +GFLSFLGG
Sbjct: 184 APEDLFLDEQEPAATGFLSFLGG 206

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYN0|PR1B1_ARATH PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1

 Score =  276 bits (705), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/200 (72%), Positives = 167/200 (83%), Gaps = 6/200 (3%)

Query: 1   MATPATLPISNPQTNTTTTTTQTQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDRT 60
           MATP TLP++N Q        Q+Q PI TPAFR F SRLS+SIR G SQRR W+EL+DR+
Sbjct: 1   MATPPTLPVTNQQA------VQSQPPINTPAFRTFFSRLSTSIRDGLSQRRPWTELIDRS 54

Query: 61  AMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYL 120
           +M+RP+SL +A SRIRKNL+YFKVNYV ++ LVLAFSL SHP SLLVL+ LLG W+FLYL
Sbjct: 55  SMARPESLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFLYL 114

Query: 121 FRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRV 180
           FRPSDQP+V+FGRTFSDRETL ALV+ TIVVVF+TSVGSLL SALM+G AIVC HGAF V
Sbjct: 115 FRPSDQPLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVV 174

Query: 181 PEDLFLDEQEPINSGFLSFL 200
           P+DLFLDEQEP N+G LSFL
Sbjct: 175 PDDLFLDEQEPANAGLLSFL 194

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB6|PR1B3_ARATH PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1

 Score =  267 bits (682), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 150/200 (75%), Positives = 169/200 (84%), Gaps = 4/200 (2%)

Query: 1   MATPATLPISNPQTNTTTTTTQTQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDRT 60
           MA P TLPIS+     +   +Q+Q P++TPAFR FLSRLSSSIR   SQRR W ELVDR+
Sbjct: 2   MANPPTLPISD----HSGGGSQSQQPVSTPAFRTFLSRLSSSIRQSLSQRRPWLELVDRS 57

Query: 61  AMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYL 120
           A+SRP+SL +AYSRIR+NL YFKVNYVT++ LVLA SLLSHPFSLLVLLCL  AWIFLYL
Sbjct: 58  AISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYL 117

Query: 121 FRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRV 180
           FRPSDQP+V+ GRTFSDRETLG LV+LTIVVVFLTSVGSLL SALM+G  IVC HGAFRV
Sbjct: 118 FRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRV 177

Query: 181 PEDLFLDEQEPINSGFLSFL 200
           PEDLFLD+QEP N+G LSFL
Sbjct: 178 PEDLFLDDQEPANTGLLSFL 197

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIY7|PR1B2_ARATH PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1

 Score =  244 bits (624), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 140/201 (69%), Positives = 166/201 (82%), Gaps = 5/201 (2%)

Query: 2   ATPATLPISNPQTNTTTTTTQTQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDRTA 61
           ++PA LP++N Q       TQ+Q PI + AFR FLSRLSSS+R   SQRR W ELVDR++
Sbjct: 3   SSPAILPVTNQQA-----ATQSQPPINSHAFRTFLSRLSSSLRESLSQRRPWLELVDRSS 57

Query: 62  MSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYLF 121
            +RPDSL +++SRIRKNL+YFKVNY  ++ LVLAFSLLSHPFSLLVLL LLG+W+FLYLF
Sbjct: 58  FARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLF 117

Query: 122 RPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVP 181
           R SDQP+VLFGR+FSDRETL  LV+ TIVVVF+TSVGSLL SAL +G AIVC HGAFRVP
Sbjct: 118 RSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVP 177

Query: 182 EDLFLDEQEPINSGFLSFLGG 202
           +DLFLDEQEP N+G LSF+G 
Sbjct: 178 DDLFLDEQEPANAGLLSFIGN 198

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M012|PR1B5_ARATH PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1

 Score =  244 bits (624), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/206 (57%), Positives = 155/206 (75%), Gaps = 12/206 (5%)

Query: 3   TPATLPISNPQTNTTTTTTQTQAPIAT-------PAFRAFLSRLSSSIRYGFSQRRHWSE 55
            P  LPIS     TT T T  Q PI T       P  RAF++ ++ ++  G S+ R WSE
Sbjct: 5   NPPVLPIS-----TTATDTTNQPPIVTAVVESQPPVVRAFVNGVTETVCGGLSRSRPWSE 59

Query: 56  LVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAW 115
           L+DR+A ++PDSL+EA +R RKN SYF+VNYV ++ L+L FSLL+HPFSL++LLCL  +W
Sbjct: 60  LLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVALILGFSLLAHPFSLILLLCLAASW 119

Query: 116 IFLYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAH 175
           +FLYLFRPSD+P++LFGR+FS+ ETLG L++ TI V+F TSVGS+LISALM+G A +C H
Sbjct: 120 LFLYLFRPSDRPLILFGRSFSEYETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVH 179

Query: 176 GAFRVPEDLFLDEQEPINSGFLSFLG 201
           GAFR P+DLFLDEQ+   SGFLSF+G
Sbjct: 180 GAFRAPDDLFLDEQDHAASGFLSFIG 205

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYQ4|PR1B6_ARATH PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 104/183 (56%), Positives = 135/183 (73%), Gaps = 4/183 (2%)

Query: 18  TTTTQTQAPIATP----AFRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYS 73
           T+TT  Q P   P    + R  LSR+ +++R+  +  R W+ELVDR+A SRP SL+EA S
Sbjct: 8   TSTTPDQLPGGDPQLLSSLRVLLSRVLATVRHASADARPWAELVDRSAFSRPPSLSEATS 67

Query: 74  RIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYLFRPSDQPVVLFGR 133
           R+RKN SYF+ NY+TL+ ++LA SLL+HPF+L +L  L  +W+FLY FRP+DQP+V+ GR
Sbjct: 68  RVRKNFSYFRANYITLVAILLAASLLTHPFALFLLASLAASWLFLYFFRPADQPLVIGGR 127

Query: 134 TFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 193
           TFSD ETLG L + T+VV+F+TSVGSLL+S L VG   V  HGAFR PEDLFL+EQE I 
Sbjct: 128 TFSDLETLGILCLSTVVVMFMTSVGSLLMSTLAVGIMGVAIHGAFRAPEDLFLEEQEAIG 187

Query: 194 SGF 196
           SG 
Sbjct: 188 SGL 190

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C889|PR1F2_ARATH PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1

 Score =  121 bits (303), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 92/155 (59%), Gaps = 2/155 (1%)

Query: 35  FLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVL 94
           ++SR    I+ G + RR W  + D  +M+ P    +A SRI+ NL YF+ NY   +  +L
Sbjct: 21  YISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFIL 80

Query: 95  AFSLLSHPFSLLVLLCLLGAWIFLYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFL 154
             SLL HP SL+VL  L+  WIFLY  R  D+P+V+FG    DR  L  L VLT+V++ L
Sbjct: 81  FLSLLYHPTSLIVLSILVVFWIFLYFLR--DEPLVVFGYQIDDRTVLIGLSVLTVVMLLL 138

Query: 155 TSVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQ 189
           T   S ++ +L+  A +V  H A R  ++LFLDE+
Sbjct: 139 THATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEE 173

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIC7|PR1F4_ARATH PRA1 family protein F4 OS=Arabidopsis thaliana GN=PRA1F4 PE=2 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 6/176 (3%)

Query: 15  NTTTTTTQTQAPIATPAF-RAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYS 73
           N    TT + A   +PA     +SR    I+ G + RR W  + D  +   P  +++ +S
Sbjct: 3   NNDEITTSSHA---SPAVNHESISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFS 59

Query: 74  RIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYLFRPSDQPVVLFGR 133
           RI+ NL+YF+ NY  ++  V+ FSL+ HP SL+V   L+  WIFLY  R  D P+ +F  
Sbjct: 60  RIKTNLAYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLR--DVPLKVFRF 117

Query: 134 TFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQ 189
              DR  L  L V+TIV++ LT+    +++ALM GA +V  H   R  +DLFLDE+
Sbjct: 118 QIDDRAVLIGLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEE 173

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIC6|PR1F3_ARATH PRA1 family protein F3 OS=Arabidopsis thaliana GN=PRA1F3 PE=1 SV=1

 Score =  110 bits (276), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 95/154 (61%), Gaps = 2/154 (1%)

Query: 36  LSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLA 95
           LSR    I+ G + RR W  + D  +M  P  +++A++RI+ NL+YF++NY  ++ +V+ 
Sbjct: 22  LSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIF 81

Query: 96  FSLLSHPFSLLVLLCLLGAWIFLYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLT 155
           FSL+ HP SL+V   L+  WIFLY  R  D+P+ LF     DR  L  L VLT+V++ LT
Sbjct: 82  FSLIWHPTSLIVFTVLVVVWIFLYFLR--DEPIKLFRFQIDDRTVLIVLSVLTVVLLLLT 139

Query: 156 SVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQ 189
           +    ++ AL+ GA +V  H   R  EDLFLDE+
Sbjct: 140 NATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEE 173

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRR1|PRA1E_ARATH PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1

 Score =  100 bits (248), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 87/148 (58%)

Query: 51  RHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLC 110
           R W E++D +A+S P    EA + ++ N+SYF+ NY   +  ++   L+ HP S++  + 
Sbjct: 48  RPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPMSMIAFIV 107

Query: 111 LLGAWIFLYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAA 170
           +   WI LY  R ++  +V+ G+   D+  L  L ++T++ +  T VG  ++ +L++G  
Sbjct: 108 VFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLVSLIIGLL 167

Query: 171 IVCAHGAFRVPEDLFLDEQEPINSGFLS 198
           IV AHGAFR  +DLFLDE+     G +S
Sbjct: 168 IVGAHGAFRNTDDLFLDEESARRGGLVS 195

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
255559559	213	Prenylated Rab acceptor protein, putativ	0.911	0.920	0.801	5e-80
356501201	215	PREDICTED: PRA1 family protein B4-like [	1.0	1.0	0.720	3e-79
356554689	215	PREDICTED: PRA1 family protein B4-like [	0.883	0.883	0.778	2e-77
357492851	256	PRA1 family protein B1 [Medicago truncat	0.939	0.789	0.748	5e-77
449518173	215	PREDICTED: PRA1 family protein B1-like [	0.916	0.916	0.75	3e-76
449457444	215	PREDICTED: PRA1 family protein B4-like [	0.916	0.916	0.75	5e-76
118484561	211	unknown [Populus trichocarpa]	0.888	0.905	0.756	5e-76
224112429	219	predicted protein [Populus trichocarpa]	0.888	0.872	0.756	7e-76
15224494	220	PRA1 family protein B4 [Arabidopsis thal	0.934	0.913	0.615	3e-74
297827413	220	prenylated rab acceptor family protein [	0.934	0.913	0.615	5e-74

>gi|255559559|ref|XP_002520799.1| Prenylated Rab acceptor protein, putative [Ricinus communis] gi|223539930|gb|EEF41508.1| Prenylated Rab acceptor protein, putative [Ricinus communis]

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 162/202 (80%), Positives = 179/202 (88%), Gaps = 6/202 (2%)

Query: 1   MATPATLPISNPQTNTTTTTTQTQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDRT 60
           M+ P T+PISN       T  Q+Q PIATPAFRAF+SRLSSSIR GFSQRR W EL+DRT
Sbjct: 1   MSAP-TIPISN-----PQTQQQSQPPIATPAFRAFISRLSSSIRQGFSQRRPWYELIDRT 54

Query: 61  AMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYL 120
           AM+RPDSL+EA SRIRKN +YFKVNY+TLL +VLAFSLLSHPFSLL+L+ LLG W FLYL
Sbjct: 55  AMTRPDSLSEAVSRIRKNATYFKVNYITLLAIVLAFSLLSHPFSLLLLIFLLGGWFFLYL 114

Query: 121 FRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRV 180
           FRPSDQP+V+ GRTFSDRETLGALVVLTIVVVFLTSVGSLLISALM+G AIVCAHGAFRV
Sbjct: 115 FRPSDQPLVILGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMIGIAIVCAHGAFRV 174

Query: 181 PEDLFLDEQEPINSGFLSFLGG 202
           PEDLFLD+QEP+NSGFLSFLGG
Sbjct: 175 PEDLFLDDQEPVNSGFLSFLGG 196

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501201|ref|XP_003519415.1| PREDICTED: PRA1 family protein B4-like [Glycine max]

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 155/215 (72%), Positives = 187/215 (86%)

Query: 1   MATPATLPISNPQTNTTTTTTQTQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDRT 60
           MA+P TLPIS+  + +  + +Q+Q PIATPAFRAF+SR+SSS+R+ F+QRR W+EL+DR+
Sbjct: 1   MASPPTLPISSQSSASGGSASQSQPPIATPAFRAFISRISSSLRHAFAQRRPWAELIDRS 60

Query: 61  AMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYL 120
           +MSRPD+LAEAYSRIRKN  YF+VNY+TL+ L LA SL++HPFSL VL  LL +W FLYL
Sbjct: 61  SMSRPDTLAEAYSRIRKNFGYFRVNYLTLIALALAVSLITHPFSLFVLFGLLASWSFLYL 120

Query: 121 FRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRV 180
           FRPSDQP+VLFGRTF+DRETLG LVVLT+ V+FLTSVGSLLISALMVG AIVC+HGAFRV
Sbjct: 121 FRPSDQPLVLFGRTFADRETLGILVVLTVFVIFLTSVGSLLISALMVGLAIVCSHGAFRV 180

Query: 181 PEDLFLDEQEPINSGFLSFLGGAASAAAPSVAARV 215
           PEDLFLD+QEP +SGFLSFLGGAA++AA    ARV
Sbjct: 181 PEDLFLDDQEPNSSGFLSFLGGAAASAAAPAVARV 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554689|ref|XP_003545676.1| PREDICTED: PRA1 family protein B4-like [Glycine max]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 148/190 (77%), Positives = 171/190 (90%)

Query: 26  PIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVN 85
           PIATPAFRAF+SR+SSS+R+ F+QRR W+EL+DR++MSRPD+LAEAYSRIRKN +YF+VN
Sbjct: 26  PIATPAFRAFISRISSSLRHAFAQRRPWTELIDRSSMSRPDTLAEAYSRIRKNFAYFRVN 85

Query: 86  YVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYLFRPSDQPVVLFGRTFSDRETLGALV 145
           Y+TL+ L LA SL+SHPFSL VL  LL +W FLYLFRPSDQPVVLFGRTF+DRETLG LV
Sbjct: 86  YLTLIVLALAVSLISHPFSLFVLFGLLASWSFLYLFRPSDQPVVLFGRTFADRETLGILV 145

Query: 146 VLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPINSGFLSFLGGAAS 205
           VLT+ V+FLTSVGSLLISALMVG AIVCAHGAFRVPEDLFLD+QEP +SGFLSFLGGAA+
Sbjct: 146 VLTVFVIFLTSVGSLLISALMVGLAIVCAHGAFRVPEDLFLDDQEPNSSGFLSFLGGAAA 205

Query: 206 AAAPSVAARV 215
           +AA    ARV
Sbjct: 206 SAAAPAVARV 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492851|ref|XP_003616714.1| PRA1 family protein B1 [Medicago truncatula] gi|355518049|gb|AES99672.1| PRA1 family protein B1 [Medicago truncatula]

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 152/203 (74%), Positives = 179/203 (88%), Gaps = 1/203 (0%)

Query: 1   MATPATLPISNPQ-TNTTTTTTQTQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDR 59
           M++P TLP+S  Q T + T+TTQ+Q PIATPAFRAF+SR+SSS+R  FSQRR WSEL+DR
Sbjct: 1   MSSPPTLPVSTSQSTISNTSTTQSQPPIATPAFRAFISRISSSLRQAFSQRRPWSELIDR 60

Query: 60  TAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLY 119
           +++SRP++LAEAYSRIRKN +YF+VNY+TL+   LA SL++HPFSLLVLL LL +W FLY
Sbjct: 61  SSISRPETLAEAYSRIRKNFTYFRVNYLTLIIFALAVSLITHPFSLLVLLGLLASWSFLY 120

Query: 120 LFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFR 179
           LFRPSDQP+VLFGRTF+DRETLG LVVLTI VVFLT+VGSLLISALMVG AIV AHGAFR
Sbjct: 121 LFRPSDQPLVLFGRTFADRETLGILVVLTIFVVFLTTVGSLLISALMVGLAIVSAHGAFR 180

Query: 180 VPEDLFLDEQEPINSGFLSFLGG 202
           VPEDLFLD+QE  +SGFLSFLGG
Sbjct: 181 VPEDLFLDDQEVSSSGFLSFLGG 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518173|ref|XP_004166118.1| PREDICTED: PRA1 family protein B1-like [Cucumis sativus]

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 150/200 (75%), Positives = 171/200 (85%), Gaps = 3/200 (1%)

Query: 1   MATPATLPISNPQTNTTTTTTQTQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDRT 60
           MA+P TLPIS PQ+   +T   +Q PIATPAFRAFLSRL+SS+R GFS RR WSELVDR+
Sbjct: 1   MASPPTLPISGPQS---STGAPSQPPIATPAFRAFLSRLTSSVRQGFSHRRPWSELVDRS 57

Query: 61  AMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYL 120
           +M+RPD+L+EAYSRIRKN SYF+VNY+TL  LVL FSLLSHPFSLL LL LL AW FLY+
Sbjct: 58  SMARPDNLSEAYSRIRKNFSYFRVNYITLFALVLGFSLLSHPFSLLTLLSLLAAWCFLYI 117

Query: 121 FRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRV 180
           FRPSDQP+V+ GRTFSD ETL  L VLT++VVFLTSVGSLLISA M+G AIVC HGAFRV
Sbjct: 118 FRPSDQPLVIRGRTFSDFETLVGLGVLTVIVVFLTSVGSLLISASMIGFAIVCIHGAFRV 177

Query: 181 PEDLFLDEQEPINSGFLSFL 200
           PEDLFLD+QEP+N GFLSFL
Sbjct: 178 PEDLFLDDQEPVNGGFLSFL 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457444|ref|XP_004146458.1| PREDICTED: PRA1 family protein B4-like [Cucumis sativus]

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 150/200 (75%), Positives = 171/200 (85%), Gaps = 3/200 (1%)

Query: 1   MATPATLPISNPQTNTTTTTTQTQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDRT 60
           MA+P TLPIS PQ+   +T   +Q PIATPAFRAFLSRL+SS+R GFS RR WSELVDR+
Sbjct: 1   MASPPTLPISGPQS---STGAPSQPPIATPAFRAFLSRLTSSVRQGFSHRRPWSELVDRS 57

Query: 61  AMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYL 120
           +M+RPD+L+EAYSRIRKN SYF+VNY+TL  LVL FSLLSHPFSLL LL LL AW FLY+
Sbjct: 58  SMARPDNLSEAYSRIRKNFSYFRVNYITLFTLVLGFSLLSHPFSLLTLLSLLAAWCFLYI 117

Query: 121 FRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRV 180
           FRPSDQP+V+ GRTFSD ETL  L VLT++VVFLTSVGSLLISA M+G AIVC HGAFRV
Sbjct: 118 FRPSDQPLVIRGRTFSDFETLVGLGVLTVIVVFLTSVGSLLISASMIGFAIVCIHGAFRV 177

Query: 181 PEDLFLDEQEPINSGFLSFL 200
           PEDLFLD+QEP+N GFLSFL
Sbjct: 178 PEDLFLDDQEPVNGGFLSFL 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484561|gb|ABK94154.1| unknown [Populus trichocarpa]

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 152/201 (75%), Positives = 175/201 (87%), Gaps = 10/201 (4%)

Query: 1   MATPATLPISNPQTNTTTTTTQTQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDRT 60
           M++P T+PISNPQT         Q+PIATPAFRAFLSR+S+SIR GFSQRR WSEL+DR 
Sbjct: 1   MSSP-TIPISNPQT---------QSPIATPAFRAFLSRISTSIRQGFSQRRPWSELIDRN 50

Query: 61  AMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYL 120
            ++RPDSL+EA +RIRKNLSYFKVNY+TLL L+LAFSLLSHP SL+VLL LL +WIFLYL
Sbjct: 51  YIARPDSLSEAATRIRKNLSYFKVNYITLLALILAFSLLSHPLSLIVLLSLLASWIFLYL 110

Query: 121 FRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRV 180
           FRPSDQP+V+ GR+FSDRETLG LVV TIVV+FLTSVGSLLISA MVG A+VCAHGAFRV
Sbjct: 111 FRPSDQPLVILGRSFSDRETLGILVVSTIVVIFLTSVGSLLISASMVGFALVCAHGAFRV 170

Query: 181 PEDLFLDEQEPINSGFLSFLG 201
           PEDLFLD+QEP ++G LSFLG
Sbjct: 171 PEDLFLDDQEPASAGLLSFLG 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112429|ref|XP_002316187.1| predicted protein [Populus trichocarpa] gi|222865227|gb|EEF02358.1| predicted protein [Populus trichocarpa]

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 152/201 (75%), Positives = 175/201 (87%), Gaps = 10/201 (4%)

Query: 1   MATPATLPISNPQTNTTTTTTQTQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDRT 60
           M++P T+PISNPQT         Q+PIATPAFRAFLSR+S+SIR GFSQRR WSEL+DR 
Sbjct: 1   MSSP-TIPISNPQT---------QSPIATPAFRAFLSRISTSIRQGFSQRRPWSELIDRN 50

Query: 61  AMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYL 120
            ++RPDSL+EA +RIRKNLSYFKVNY+TLL L+LAFSLLSHP SL+VLL LL +WIFLYL
Sbjct: 51  YIARPDSLSEAATRIRKNLSYFKVNYITLLALILAFSLLSHPLSLIVLLSLLASWIFLYL 110

Query: 121 FRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRV 180
           FRPSDQP+V+ GR+FSDRETLG LVV TIVV+FLTSVGSLLISA MVG A+VCAHGAFRV
Sbjct: 111 FRPSDQPLVILGRSFSDRETLGILVVSTIVVIFLTSVGSLLISASMVGFALVCAHGAFRV 170

Query: 181 PEDLFLDEQEPINSGFLSFLG 201
           PEDLFLD+QEP ++G LSFLG
Sbjct: 171 PEDLFLDDQEPASAGLLSFLG 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224494|ref|NP_181370.1| PRA1 family protein B4 [Arabidopsis thaliana] gi|75099986|sp|O80915.1|PR1B4_ARATH RecName: Full=PRA1 family protein B4; Short=AtPRA1.B4 gi|3395436|gb|AAC28768.1| unknown protein [Arabidopsis thaliana] gi|38454104|gb|AAR20746.1| At2g38360 [Arabidopsis thaliana] gi|45592910|gb|AAS68109.1| At2g38360 [Arabidopsis thaliana] gi|110738045|dbj|BAF00957.1| hypothetical protein [Arabidopsis thaliana] gi|330254433|gb|AEC09527.1| PRA1 family protein B4 [Arabidopsis thaliana]

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 125/203 (61%), Positives = 170/203 (83%), Gaps = 2/203 (0%)

Query: 2   ATPATLPISNPQT--NTTTTTTQTQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDR 59
           + P  LPISNPQT  +   ++ ++Q PIATPAFR F+++++ +++ G S+RR W+EL DR
Sbjct: 4   SAPPVLPISNPQTVPSAAPSSVESQPPIATPAFRNFINQITETVKNGLSKRRPWAELADR 63

Query: 60  TAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLY 119
           +A+S+P+S+++A  RIRKN SYFKVNY+T+   ++ FSL++HPFSL+ LLCLL +W+FLY
Sbjct: 64  SALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLY 123

Query: 120 LFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFR 179
           LFRP+DQP+VLFGRTFSDRETLG L++ +I V+FLT VGS+L+SA+M+G A++CAHGAFR
Sbjct: 124 LFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFR 183

Query: 180 VPEDLFLDEQEPINSGFLSFLGG 202
            PEDLFLDEQEP  +GFLSFLGG
Sbjct: 184 APEDLFLDEQEPAATGFLSFLGG 206

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827413|ref|XP_002881589.1| prenylated rab acceptor family protein [Arabidopsis lyrata subsp. lyrata] gi|297327428|gb|EFH57848.1| prenylated rab acceptor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 125/203 (61%), Positives = 170/203 (83%), Gaps = 2/203 (0%)

Query: 2   ATPATLPISNPQT--NTTTTTTQTQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDR 59
           + P  LPISNPQT  +   ++ ++Q PIATPAFR F+++++ +++ G S+RR W+EL DR
Sbjct: 4   SAPPVLPISNPQTVPSAAPSSVESQPPIATPAFRNFINQITETVKNGLSKRRPWAELADR 63

Query: 60  TAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLY 119
           +A+S+P+S+++A  RIRKN SYFKVNY+T+   ++ FSL++HPFSL+ LLCLL +W+FLY
Sbjct: 64  SALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLY 123

Query: 120 LFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFR 179
           LFRP+DQP+V+FGRTFSDRETLG L++ +I V+FLT VGS+L+SA+MVG A++CAHGAFR
Sbjct: 124 LFRPTDQPIVVFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMVGVALICAHGAFR 183

Query: 180 VPEDLFLDEQEPINSGFLSFLGG 202
            PEDLFLDEQEP  +GFLSFLGG
Sbjct: 184 APEDLFLDEQEPAATGFLSFLGG 206

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
TAIR|locus:2078371	209	PRA1.B1 "AT3G56110" [Arabidops	0.869	0.894	0.518	2.1e-45
TAIR|locus:2153589	217	PRA1.B3 "AT5G05380" [Arabidops	0.879	0.870	0.538	2.1e-45
TAIR|locus:2063120	213	PRA1.B2 "AT2G40380" [Arabidops	0.869	0.877	0.494	9.3e-43
TAIR|locus:2057197	220	PRA1.B4 "AT2G38360" [Arabidops	0.883	0.863	0.437	1.2e-40
TAIR|locus:2149815	223	PRA1.B5 "AT5G01640" [Arabidops	0.734	0.708	0.455	2.2e-34
TAIR|locus:2169364	216	PRA1.B6 "AT5G07110" [Arabidops	0.744	0.740	0.456	4.1e-33
TAIR|locus:2091556	188	PRA8 "AT3G13720" [Arabidopsis	0.706	0.808	0.298	2e-15
TAIR|locus:2035701	189	PRA7 [Arabidopsis thaliana (ta	0.711	0.809	0.290	2e-15
TAIR|locus:2025615	209	PRA1.E "AT1G08770" [Arabidopsi	0.646	0.665	0.287	1e-13
TAIR|locus:2091541	188	PRA1.F4 "AT3G13710" [Arabidops	0.706	0.808	0.279	1.3e-13

TAIR|locus:2078371 PRA1.B1 "AT3G56110" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 100/193 (51%), Positives = 116/193 (60%)

Query:     1 MATPATLPISNXXXXXXXXXXXXXXXXXXXXFRAFLSRLSSSIRYGFSQRRHWSELVDRT 60
             MATP TLP++N                    FR F SRLS+SIR G SQRR W+EL+DR+
Sbjct:     1 MATPPTLPVTNQQAVQSQPPINTPA------FRTFFSRLSTSIRDGLSQRRPWTELIDRS 54

Query:    61 AMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYL 120
             +M+RP+SL +A SRIRKNL+YFKVNYV                         G W+FLYL
Sbjct:    55 SMARPESLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFLYL 114

Query:   121 FRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRV 180
             FRPSDQP+V+FGRTFSDRE                  GSLL SALM+G AIVC HGAF V
Sbjct:   115 FRPSDQPLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVV 174

Query:   181 PEDLFLDEQEPIN 193
             P+DLFLDEQEP N
Sbjct:   175 PDDLFLDEQEPAN 187

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2153589 PRA1.B3 "AT5G05380" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 104/193 (53%), Positives = 114/193 (59%)

Query:     1 MATPATLPISNXXXXXXXXXXXXXXXXXXXXFRAFLSRLSSSIRYGFSQRRHWSELVDRT 60
             MA P TLPIS+                    FR FLSRLSSSIR   SQRR W ELVDR+
Sbjct:     2 MANPPTLPISDHSGGGSQSQQPVSTPA----FRTFLSRLSSSIRQSLSQRRPWLELVDRS 57

Query:    61 AMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYL 120
             A+SRP+SL +AYSRIR+NL YFKVNYVT                         AWIFLYL
Sbjct:    58 AISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYL 117

Query:   121 FRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRV 180
             FRPSDQP+V+ GRTFSDRE                  GSLL SALM+G  IVC HGAFRV
Sbjct:   118 FRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRV 177

Query:   181 PEDLFLDEQEPIN 193
             PEDLFLD+QEP N
Sbjct:   178 PEDLFLDDQEPAN 190

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

TAIR|locus:2063120 PRA1.B2 "AT2G40380" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 95/192 (49%), Positives = 113/192 (58%)

Query:     2 ATPATLPISNXXXXXXXXXXXXXXXXXXXXFRAFLSRLSSSIRYGFSQRRHWSELVDRTA 61
             ++PA LP++N                    FR FLSRLSSS+R   SQRR W ELVDR++
Sbjct:     3 SSPAILPVTNQQAATQSQPPINSHA-----FRTFLSRLSSSLRESLSQRRPWLELVDRSS 57

Query:    62 MSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLF 121
              +RPDSL +++SRIRKNL+YFKVNY                          G+W+FLYLF
Sbjct:    58 FARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLF 117

Query:   122 RPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVP 181
             R SDQP+VLFGR+FSDRE                  GSLL SAL +G AIVC HGAFRVP
Sbjct:   118 RSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVP 177

Query:   182 EDLFLDEQEPIN 193
             +DLFLDEQEP N
Sbjct:   178 DDLFLDEQEPAN 189

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2057197 PRA1.B4 "AT2G38360" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 84/192 (43%), Positives = 113/192 (58%)

Query:     2 ATPATLPISNXXXXXXXXXXXXXXX--XXXXXFRAFLSRLSSSIRYGFSQRRHWSELVDR 59
             + P  LPISN                      FR F+++++ +++ G S+RR W+EL DR
Sbjct:     4 SAPPVLPISNPQTVPSAAPSSVESQPPIATPAFRNFINQITETVKNGLSKRRPWAELADR 63

Query:    60 TAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLY 119
             +A+S+P+S+++A  RIRKN SYFKVNY+T                         +W+FLY
Sbjct:    64 SALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLY 123

Query:   120 LFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFR 179
             LFRP+DQP+VLFGRTFSDRE                  GS+L+SA+M+G A++CAHGAFR
Sbjct:   124 LFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFR 183

Query:   180 VPEDLFLDEQEP 191
              PEDLFLDEQEP
Sbjct:   184 APEDLFLDEQEP 195

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2149815 PRA1.B5 "AT5G01640" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 72/158 (45%), Positives = 98/158 (62%)

Query:    33 RAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXX 92
             RAF++ ++ ++  G S+ R WSEL+DR+A ++PDSL+EA +R RKN SYF+VNYV     
Sbjct:    37 RAFVNGVTETVCGGLSRSRPWSELLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVAL 96

Query:    93 XXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXX 152
                                  +W+FLYLFRPSD+P++LFGR+FS+ E             
Sbjct:    97 ILGFSLLAHPFSLILLLCLAASWLFLYLFRPSDRPLILFGRSFSEYETLGGLILSTIAVI 156

Query:   153 XXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQE 190
                  GS+LISALM+G A +C HGAFR P+DLFLDEQ+
Sbjct:   157 FFTSVGSVLISALMIGIATICVHGAFRAPDDLFLDEQD 194

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2169364 PRA1.B6 "AT5G07110" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 73/160 (45%), Positives = 92/160 (57%)

Query:    33 RAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXX 92
             R  LSR+ +++R+  +  R W+ELVDR+A SRP SL+EA SR+RKN SYF+ NY+T    
Sbjct:    27 RVLLSRVLATVRHASADARPWAELVDRSAFSRPPSLSEATSRVRKNFSYFRANYITLVAI 86

Query:    93 XXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXX 152
                                  +W+FLY FRP+DQP+V+ GRTFSD E             
Sbjct:    87 LLAASLLTHPFALFLLASLAASWLFLYFFRPADQPLVIGGRTFSDLETLGILCLSTVVVM 146

Query:   153 XXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPI 192
                  GSLL+S L VG   V  HGAFR PEDLFL+EQE I
Sbjct:   147 FMTSVGSLLMSTLAVGIMGVAIHGAFRAPEDLFLEEQEAI 186

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2091556 PRA8 "AT3G13720" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 46/154 (29%), Positives = 66/154 (42%)

Query:    36 LSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXX 95
             LSR    I+ G + RR W  + D  +M  P  +++A++RI+ NL+YF++NY         
Sbjct:    22 LSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIF 81

Query:    96 XXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXX 155
                                WIFLY  R  D+P+ LF     DR                 
Sbjct:    82 FSLIWHPTSLIVFTVLVVVWIFLYFLR--DEPIKLFRFQIDDRTVLIVLSVLTVVLLLLT 139

Query:   156 XXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQ 189
                  ++ AL+ GA +V  H   R  EDLFLDE+
Sbjct:   140 NATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEE 173

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2035701 PRA7 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 45/155 (29%), Positives = 66/155 (42%)

Query:    35 FLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXX 94
             ++SR    I+ G + RR W  + D  +M+ P    +A SRI+ NL YF+ NY        
Sbjct:    21 YISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFIL 80

Query:    95 XXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXX 154
                                 WIFLY  R  D+P+V+FG    DR                
Sbjct:    81 FLSLLYHPTSLIVLSILVVFWIFLYFLR--DEPLVVFGYQIDDRTVLIGLSVLTVVMLLL 138

Query:   155 XXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQ 189
                 S ++ +L+  A +V  H A R  ++LFLDE+
Sbjct:   139 THATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEE 173

GO:0009507 "chloroplast" evidence=ISM

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2025615 PRA1.E "AT1G08770" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 40/139 (28%), Positives = 62/139 (44%)

Query:    51 RHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXX 110
             R W E++D +A+S P    EA + ++ N+SYF+ NY                        
Sbjct:    48 RPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPMSMIAFIV 107

Query:   111 XXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAA 170
                 WI LY  R ++  +V+ G+   D+                   G  ++ +L++G  
Sbjct:   108 VFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLVSLIIGLL 167

Query:   171 IVCAHGAFRVPEDLFLDEQ 189
             IV AHGAFR  +DLFLDE+
Sbjct:   168 IVGAHGAFRNTDDLFLDEE 186

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2091541 PRA1.F4 "AT3G13710" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 43/154 (27%), Positives = 63/154 (40%)

Query:    36 LSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXX 95
             +SR    I+ G + RR W  + D  +   P  +++ +SRI+ NL+YF+ NY         
Sbjct:    22 ISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIF 81

Query:    96 XXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXX 155
                                WIFLY  R  D P+ +F     DR                 
Sbjct:    82 FSLIWHPTSLIVFTGLVFLWIFLYFLR--DVPLKVFRFQIDDRAVLIGLSVITIVLLLLT 139

Query:   156 XXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQ 189
                  +++ALM GA +V  H   R  +DLFLDE+
Sbjct:   140 NATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEE 173

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80915	PR1B4_ARATH	No assigned EC number	0.6157	0.9348	0.9136	yes	no
Q9FLB6	PR1B3_ARATH	No assigned EC number	0.75	0.9116	0.9032	no	no
Q9LYN0	PR1B1_ARATH	No assigned EC number	0.72	0.9023	0.9282	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	215
pfam03208	153	pfam03208, PRA1, PRA1 family protein	9e-54
COG5130	169	COG5130, YIP3, Prenylated rab acceptor 1 and relat	4e-07

>gnl|CDD|190565 pfam03208, PRA1, PRA1 family protein

 Score =  168 bits (429), Expect = 9e-54
 Identities = 78/154 (50%), Positives = 108/154 (70%), Gaps = 1/154 (0%)

Query: 42  SIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSH 101
           S++   +  R WSE  DR+  SRP S +EA SR+R+NL YF+ NY  ++  VL  SLL++
Sbjct: 1   SVQSRLAPLRPWSEFFDRSRFSRPRSFSEATSRVRRNLLYFQTNYAIVVLAVLLLSLLTN 60

Query: 102 PFSLLVLLCLLGAWIFLYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLL 161
           P SL+VLL L+ AW+FLY  RP ++P+VLFGRTFSDR+ L  L+V+++ ++FLTS GS+L
Sbjct: 61  PLSLIVLLVLVAAWLFLYFLRP-NEPLVLFGRTFSDRQVLIGLLVVSVPLLFLTSAGSVL 119

Query: 162 ISALMVGAAIVCAHGAFRVPEDLFLDEQEPINSG 195
           +  L  G  +V AH AFR+  DLFLDE E  + G
Sbjct: 120 LWLLGAGLLLVLAHAAFRLRNDLFLDENEAESIG 153

This family includes the PRA1 (Prenylated rab acceptor) protein which is a Rab guanine dissociation inhibitor (GDI) displacement factor. This family also includes the glutamate transporter EAAC1 interacting protein GTRAP3-18. Length = 153

>gnl|CDD|227459 COG5130, YIP3, Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

 Score = 48.0 bits (114), Expect = 4e-07
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 2/142 (1%)

Query: 37  SRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAF 96
           S +  SI+     +    E  +   +S P +  EA SR+  NL  F  NY+ ++ ++  +
Sbjct: 16  SEIYRSIKQALGDKDVTREFFNIGRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIY 75

Query: 97  SLLSHPFSLLVLLCLLGAWIFLYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTS 156
            LL +   LL+++  +       + +   +P+V              LV + I   F  S
Sbjct: 76  YLLYNL--LLLIVIGIVVAGVYGIRKLRGRPLVCNIELEPRSVLYAGLVCVLIPFGFFAS 133

Query: 157 VGSLLISALMVGAAIVCAHGAF 178
               L+        +V  H A 
Sbjct: 134 PIVTLLWLSGASGVVVFGHAAL 155

Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
KOG3142	187	consensus Prenylated rab acceptor 1 [Intracellular	100.0
PF03208	153	PRA1: PRA1 family protein; InterPro: IPR004895 Thi	100.0
KOG4050	188	consensus Glutamate transporter EAAC1-interacting	99.88
COG5130	169	YIP3 Prenylated rab acceptor 1 and related protein	99.88

>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-49  Score=332.61  Aligned_cols=177  Identities=53%  Similarity=0.882  Sum_probs=169.5

Q ss_pred             CCCCCCChHHHHHHHHHHHHHhhcCCCCCChhHhhcCCCCCCCCCHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhh
Q 046013           23 TQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHP  102 (215)
Q Consensus        23 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~RPW~EF~d~~~fs~P~s~~ea~~Ri~~NL~yF~~NY~li~~~l~~~~ll~~P  102 (215)
                      ++.++++++.+.+.++.+++.|+.++++|||+||+|+++|++|+|++|+.+|+++|+.|||.||.+++.++.++++++||
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~lst~RpW~ef~d~~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~~~~sLi~~P   89 (187)
T KOG3142|consen   10 SSSPSQALSVESISSRAKQTIQSGLSTRRPWSEFFDRSAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAILLFLSLITHP   89 (187)
T ss_pred             CCCcccccchhhHHHHHHHHHHHHHhccCCHHHHHcccccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhH
Confidence            44455677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCeeecceecchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCC
Q 046013          103 FSLLVLLCLLGAWIFLYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPE  182 (215)
Q Consensus       103 ~~Ll~l~~l~~~w~~l~~~r~~~~~~~i~gr~~~~~~~~~~l~~vsi~ll~lt~~~~~lf~~l~~s~~vvllHAa~R~~~  182 (215)
                      ++|+++++++++|+|+|+.|  |+|++++||+++|+++++++.+++++++|+++++.+++|++++|+++|+.||+||++|
T Consensus        90 ~~Livl~~lv~~w~~LY~~r--d~pLvlfgr~i~d~~~l~~L~~~ti~~lflt~~~~~l~~~l~~g~~vv~~Haafr~~d  167 (187)
T KOG3142|consen   90 LSLIVLLALVAAWLFLYFLR--DEPLVLFGRQISDREVLIGLVLITIPVLFLTSAGSNLLWALGAGLVVVLIHAAFRNTD  167 (187)
T ss_pred             HHHHHHHHHHHHHHheeeec--CCCeEEeeEEecCcchhhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHhHHHHhChH
Confidence            99999999999999999987  6899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccCCCceeecc
Q 046013          183 DLFLDEQEPINSGFLSFLG  201 (215)
Q Consensus       183 ~l~~de~~~~~~~~~~~~~  201 (215)
                      |+|+||||+..+|++|+.+
T Consensus       168 dLF~dee~~~~~gl~s~~~  186 (187)
T KOG3142|consen  168 DLFLDEEEAAASGLLSFSS  186 (187)
T ss_pred             hhhhhhhhcccccccccCC
Confidence            9999999988889999854

>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1

Probab=100.00  E-value=1.8e-37  Score=251.24  Aligned_cols=150  Identities=38%  Similarity=0.637  Sum_probs=140.9

Q ss_pred             hhcCCCCCChhHhhcCCCCCCCCCHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccC
Q 046013           44 RYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYLFRP  123 (215)
Q Consensus        44 ~~~l~~~RPW~EF~d~~~fs~P~s~~ea~~Ri~~NL~yF~~NY~li~~~l~~~~ll~~P~~Ll~l~~l~~~w~~l~~~r~  123 (215)
                      +++++++|||+||+|.++|+.|+|.+|+.+|+++|+.|||+||++++++++++++++||..++++++++++|.+++..+.
T Consensus         2 ~~~~~~~Rpw~eF~~~~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~~   81 (153)
T PF03208_consen    2 QSRLSPLRPWREFFDTSRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSRK   81 (153)
T ss_pred             ccccCCCCCHHHHhCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999987765


Q ss_pred             CCCCeeecceecchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccC
Q 046013          124 SDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN  193 (215)
Q Consensus       124 ~~~~~~i~gr~~~~~~~~~~l~~vsi~ll~lt~~~~~lf~~l~~s~~vvllHAa~R~~~~l~~de~~~~~  193 (215)
                      +++++.+.|+++++++++.++.+++++++++++++.+++|++++++++|++||+||+||+++.+|+|..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~lvl~HA~~r~~~~~~~~e~~~~~  151 (153)
T PF03208_consen   82 ENDPIVIGGRKISPRQVLLALLIVSILLLFFTSAGLTLFWSLGASVLLVLLHASFREPDLKNKEENEIES  151 (153)
T ss_pred             cCcchhccCcccCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhHHhc
Confidence            4678999999999999999999999999999999999999999999999999999999998888877554

>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.88  E-value=2.4e-22  Score=163.94  Aligned_cols=133  Identities=15%  Similarity=0.262  Sum_probs=107.5

Q ss_pred             cCCCCCChhHhh-cCCCCCCCC--CHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHh
Q 046013           46 GFSQRRHWSELV-DRTAMSRPD--SLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGA----WIFL  118 (215)
Q Consensus        46 ~l~~~RPW~EF~-d~~~fs~P~--s~~ea~~Ri~~NL~yF~~NY~li~~~l~~~~ll~~P~~Ll~l~~l~~~----w~~l  118 (215)
                      +++++|.|+||+ +.+||..|+  |+++|.+|+.+|+.|||+||+++++.++.+..+.+|..+++.++..++    ..|-
T Consensus        15 ~lpPlRa~ddF~lgS~Rfa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlvi~~liwa   94 (188)
T KOG4050|consen   15 ELPPLRALDDFLLGSDRFARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLVIGTLIWA   94 (188)
T ss_pred             CCCcchhHHHhccCcccccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999 899999998  999999999999999999999999999999999999977753333222    2222


Q ss_pred             hhccCCCCCeeecceecchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCC
Q 046013          119 YLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPE  182 (215)
Q Consensus       119 ~~~r~~~~~~~i~gr~~~~~~~~~~l~~vsi~ll~lt~~~~~lf~~l~~s~~vvllHAa~R~~~  182 (215)
                      ..   .++.++.+.++ .+...+++...++.++++++++..++.+++..+++++++||++|.++
T Consensus        95 ~~---~~a~~krmr~~-hp~~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~lvHASLRLRn  154 (188)
T KOG4050|consen   95 AS---ADANIKRMRTD-HPLVTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVLVHASLRLRN  154 (188)
T ss_pred             Hh---ccHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            21   22333333333 34556677788889999999999999999999999999999999773

>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

Probab=99.88  E-value=2.2e-22  Score=161.17  Aligned_cols=145  Identities=21%  Similarity=0.234  Sum_probs=128.9

Q ss_pred             HHHHHHhhcCCCCCChhHhhcCCCCCCCCCHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 046013           38 RLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIF  117 (215)
Q Consensus        38 ~~~~~~~~~l~~~RPW~EF~d~~~fs~P~s~~ea~~Ri~~NL~yF~~NY~li~~~l~~~~ll~~P~~Ll~l~~l~~~w~~  117 (215)
                      ..-.+.++.++..+.-+||||..|.|+|++++|+.+|+-.|++||..||..++..+.+|.+++||.+++++.+.+++.+.
T Consensus        17 e~~~s~~q~L~~~~~~~eFfni~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGvyg   96 (169)
T COG5130          17 EIYRSIKQALGDKDVTREFFNIGRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGVYG   96 (169)
T ss_pred             HHHHHHHHHhcCcccHHHHhccccccCCcchHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhheeee
Confidence            44456667788899999999999999999999999999999999999999999999999999999999998888888777


Q ss_pred             hhhccCCCCCeeecceecchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCC
Q 046013          118 LYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPEDL  184 (215)
Q Consensus       118 l~~~r~~~~~~~i~gr~~~~~~~~~~l~~vsi~ll~lt~~~~~lf~~l~~s~~vvllHAa~R~~~~l  184 (215)
                      +.+.|  +++++..-+..+..++|..+.++.+++-++.+...+++|..++|.+++..||++..++-.
T Consensus        97 i~kl~--g~~lv~~~~~~~~~~ly~glvcvlip~gffaspI~tllwl~gas~v~vfgHAal~e~p~e  161 (169)
T COG5130          97 IRKLR--GRPLVCNIELEPRSVLYAGLVCVLIPFGFFASPIVTLLWLSGASGVVVFGHAALLEEPLE  161 (169)
T ss_pred             hhhcc--cCccccccceeecchhhhhHHHHHHHHHHHHhHHHHHHHHHhcceeEeechHHHcCCccc
Confidence            77766  456776666667778899999999999999999999999999999999999999987655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00