Citrus Sinensis ID: 046022

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MQQTKEQDPISSAGKHAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGATE
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHccccEEEccccccccEEEEcccccHHHHHHHHHHcccEEEEEEccccccccccccccccccccccccccEEEEEEEHHHHHHHHHcccccccccccccHHHHHccccHHHHHccccccccEEEccccccHHHHHHHHHcccEEEEEEcccccccccccEEcccccEEEEEcHHHHHHHHHHcHHHHHHHHcccccHHccccccEEEEEccccHHHHHHHHHHccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHcccccHHcccccEEEEEcccccHHHHHHHHHHcccEEEEEEcccccEEcccccEEEccccccccHHHHEEEHHHHHHHHHHHHHccccccccccHHHHHHHHccccHHHcccccccccEEEccccccHHHHHHHHHccccEEEEEcccccccccccEcccccccccEccHHHHHHHHHHHHHHHcccccccHHHcccccccEEEEcccHHHHHHHHHHHHccccEEEEEEcccccc
Coil and Loop (DISEMBL)
mqqtkeqdpissagkHAADENQRLLREAKVRDLTAEKRrivevphtasLAHTMNALVANKVvavpvaappgqwigaggsmimesdkqtgAVRKHYIGMLTMLDILAHiagddqmngsddapddldkkmsapvssiighcpeglslwtlspntsilDCMEVFSKGIHralvpmdsrmenisgVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVpivkssgate
Flexible Loop (DISEMBL)
mqqtkeqdpissagkhaadenqRLLREAKvrdltaekrrivevphtaslaHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHavpivkssgate
Low Complexity Region (SEG)
MQQTKEQDPISSAGKHAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNalvankvvavpvaappGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGATE
Disordered region (IsUnstruct)
*************************************RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAG***********************SIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIV*******
Disordered Region (DISOPRED)
***********************LLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDI*SHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS*****
Disordered Region (DISEMBL)
******************DENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGATE
Disordered Region (DISPRO)
********************NQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQTKEQDPISSAGKHAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGATE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q9XI37	352	SNF1-related protein kina	yes	no	0.885	0.659	0.652	1e-86
Q8GXI9	357	SNF1-related protein kina	no	no	0.881	0.647	0.617	1e-83
Q8GZA4	425	CBS domain-containing pro	no	no	0.751	0.463	0.220	6e-07

>sp|Q9XI37|PV42A_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42a OS=Arabidopsis thaliana GN=PV42A PE=1 SV=1

 Score =  319 bits (817), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 158/242 (65%), Positives = 194/242 (80%), Gaps = 10/242 (4%)

Query: 18  ADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAG 77
           + E+   L     +DLT   RR+VEVP+TA+L+H MN LVAN + A+PVAAPPG WIGAG
Sbjct: 6   SKEDHSRLINVTAKDLTVRNRRLVEVPYTATLSHAMNTLVANSISALPVAAPPGHWIGAG 65

Query: 78  GSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIG 137
           GSMIMESDKQTG VRKHYIG+LTMLDILAHIAG+D          DLD+KMS+ VSSIIG
Sbjct: 66  GSMIMESDKQTGVVRKHYIGILTMLDILAHIAGEDS------NLSDLDRKMSSQVSSIIG 119

Query: 138 HCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMEN---ISGVELVESASSYQML 194
           HC EGLSLWTL+PNTS+L+CMEVFSKGIHRALVP++S +E+   I+GVEL+ESAS+Y+ML
Sbjct: 120 HCLEGLSLWTLNPNTSVLECMEVFSKGIHRALVPVESSIESNNTIAGVELIESASAYKML 179

Query: 195 TQMDLLRFMMN-HASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVP 253
           TQMDLLRF+ + H  +LK + S SI +LGA+N++V+AITE T V +AI  M+ ALL+AVP
Sbjct: 180 TQMDLLRFLKDHHFDDLKTVLSRSISDLGAVNDSVYAITERTTVSNAINVMKGALLNAVP 239

Query: 254 IV 255
           IV
Sbjct: 240 IV 241

Plays redundant role with PV42b in regulating male gametogenesis and pollen tube guidance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXI9|PV42B_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42b OS=Arabidopsis thaliana GN=PV42B PE=2 SV=1

 Score =  309 bits (792), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 147/238 (61%), Positives = 188/238 (78%), Gaps = 7/238 (2%)

Query: 25  LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMES 84
           L + KV+DL  +KRR+VEVP  A+L   +N +VAN+V AVPVAA PGQW+GAGGSMI+E 
Sbjct: 7   LMQFKVKDLMIDKRRLVEVPDNATLGDALNTMVANRVRAVPVAAKPGQWLGAGGSMIVEL 66

Query: 85  DKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLS 144
           DKQ+G+ RK YIGM+TMLD++AHIAGDD  +G       LDKKM+APVSSIIGHCPEGLS
Sbjct: 67  DKQSGSARKQYIGMVTMLDVVAHIAGDDGESG-------LDKKMAAPVSSIIGHCPEGLS 119

Query: 145 LWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMM 204
           LW+L+PNTSI+DCME+ SKGIHR LVP+DS  ENI+G ELVESAS+Y ML+QMDL+ F  
Sbjct: 120 LWSLNPNTSIMDCMEMLSKGIHRVLVPLDSNTENITGPELVESASAYAMLSQMDLISFFF 179

Query: 205 NHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGATE 262
           + +S+L  I SH++ +L A++  V A+T   +V DAI+CM  A+L+AVPIV++SG  E
Sbjct: 180 DQSSQLHGILSHTVTDLSAIHNTVLALTSQARVKDAIQCMSIAMLNAVPIVEASGEGE 237

Plays redundant role with PV42a in regulating male gametogenesis and pollen tube guidance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GZA4|CBSX6_ARATH CBS domain-containing protein CBSX6 OS=Arabidopsis thaliana GN=CBSX6 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 97/245 (39%), Gaps = 48/245 (19%)

Query: 30  VRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTG 89
           V DLT  K  +VE   T ++   + A+  +    +PV      W       +    + + 
Sbjct: 10  VGDLTVGKPEMVEFYETETVESAIRAIGESTECGIPV------WRKRTTPSLPGFVENSE 63

Query: 90  AVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLS 149
             ++ ++G+L  LDI+A +A  + +          +K M  PVS ++   P+   L  + 
Sbjct: 64  MRQQRFVGILNSLDIVAFLAKTECLQE--------EKAMKIPVSEVVS--PDNTLLKQVD 113

Query: 150 PNTSILDCMEVFSKGIHRALVP-------MDSRME------------------------- 177
           P T ++D +E+  +G+ R LVP       M  R                           
Sbjct: 114 PGTRLIDALEMMKQGVRRLLVPKSVVWRGMSKRFSILYNGKWLKNSENSSSSSGLSADST 173

Query: 178 NISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKV 237
           N     +  S   +  L++ D++RF++     L  +   SI  LG +N+N   I  S   
Sbjct: 174 NRPTTSMTSSRDKFCCLSREDVIRFLIGVLGALAPLPLTSISTLGIINQNYNFIEASLPA 233

Query: 238 IDAIK 242
           I+A +
Sbjct: 234 IEATR 238

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
255553209	403	AMP-activated protein kinase, gamma regu	0.988	0.642	0.740	1e-101
32364484	382	SNF4b [Medicago truncatula]	0.893	0.612	0.711	2e-91
357455259	394	SNF4b [Medicago truncatula] gi|355486958	0.893	0.593	0.711	2e-91
1113941	379	Pv42p [Phaseolus vulgaris]	0.908	0.627	0.673	2e-91
350535823	373	SNF4 protein [Solanum lycopersicum] gi|7	0.954	0.670	0.661	4e-85
15218127	352	Cystathionine beta-synthase (CBS) protei	0.885	0.659	0.652	8e-85
147794673	361	hypothetical protein VITISV_035347 [Viti	0.896	0.650	0.697	5e-84
225442939	361	PREDICTED: SNF1-related protein kinase r	0.881	0.639	0.708	6e-84
242060568	439	hypothetical protein SORBIDRAFT_04g00410	0.969	0.578	0.582	1e-82
297844434	352	CBS domain-containing protein [Arabidops	0.885	0.659	0.652	3e-82

>gi|255553209|ref|XP_002517647.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] gi|223543279|gb|EEF44811.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/262 (74%), Positives = 226/262 (86%), Gaps = 3/262 (1%)

Query: 1   MQQTKEQDPISSAGKHAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANK 60
           MQ+ K    ++++ K    +N+RL ++ +V+DL  +KRR+VEVP+TASLAHTMN LVAN+
Sbjct: 23  MQEQKLD--LNTSTKSLPSQNERL-KDRRVKDLMVDKRRLVEVPYTASLAHTMNTLVANQ 79

Query: 61  VVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDA 120
           VVAVPVAAPPG WIGAGGSMIMESDKQTGAVRKHYIGM+TMLDILAHIAGDDQMNG DD 
Sbjct: 80  VVAVPVAAPPGHWIGAGGSMIMESDKQTGAVRKHYIGMVTMLDILAHIAGDDQMNGGDDD 139

Query: 121 PDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENIS 180
             DLD+KMS PVSSIIGHC EGLSLWTL+PNTSILDCMEVFSKGIHRALVP+DS MENIS
Sbjct: 140 ASDLDRKMSVPVSSIIGHCLEGLSLWTLNPNTSILDCMEVFSKGIHRALVPLDSHMENIS 199

Query: 181 GVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDA 240
           GVELVESASSY+MLTQMDL++F+  HASEL+   S  + E+GA+NENV+AIT  TKVIDA
Sbjct: 200 GVELVESASSYRMLTQMDLVKFLKEHASELQGFISRPVSEIGAVNENVYAITGHTKVIDA 259

Query: 241 IKCMRAALLHAVPIVKSSGATE 262
           IKCMRA+LL+AVPIV +S + E
Sbjct: 260 IKCMRASLLNAVPIVVASDSLE 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32364484|gb|AAO61675.1| SNF4b [Medicago truncatula]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 168/236 (71%), Positives = 211/236 (89%), Gaps = 2/236 (0%)

Query: 25  LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMES 84
           L+E KV+DL   K+R+VEVP+TASL  TMN LVANKVVAVPVAAPPGQWIGAGGSMI+ES
Sbjct: 19  LKEKKVKDLMVNKKRLVEVPYTASLGQTMNTLVANKVVAVPVAAPPGQWIGAGGSMIVES 78

Query: 85  DKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLS 144
           DKQTGAVRKHYIGM+TMLDI+AHIAGDD ++G DD  +DLD++MS PVSSIIGH  EGLS
Sbjct: 79  DKQTGAVRKHYIGMVTMLDIVAHIAGDDHLSGGDDVEEDLDQRMSVPVSSIIGHSFEGLS 138

Query: 145 LWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENIS-GVELVESASSYQMLTQMDLLRFM 203
           LWTL+PNTS+LDCMEV SKG+HRA++P DS++EN+S GVEL+ES+SSYQMLTQMD+LRF+
Sbjct: 139 LWTLNPNTSLLDCMEVLSKGVHRAMIPTDSQIENVSAGVELIESSSSYQMLTQMDVLRFL 198

Query: 204 MNHASELKD-ITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSS 258
            +H +EL+  + SHS+++LGA+ E ++AITE TK+IDAIKC++AA+L+A+PIV++S
Sbjct: 199 KDHGNELQSTLHSHSVQDLGAITERIYAITERTKLIDAIKCLKAAMLNALPIVRAS 254

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455259|ref|XP_003597910.1| SNF4b [Medicago truncatula] gi|355486958|gb|AES68161.1| SNF4b [Medicago truncatula]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 168/236 (71%), Positives = 211/236 (89%), Gaps = 2/236 (0%)

Query: 25  LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMES 84
           L+E KV+DL   K+R+VEVP+TASL  TMN LVANKVVAVPVAAPPGQWIGAGGSMI+ES
Sbjct: 19  LKEKKVKDLMVNKKRLVEVPYTASLGQTMNTLVANKVVAVPVAAPPGQWIGAGGSMIVES 78

Query: 85  DKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLS 144
           DKQTGAVRKHYIGM+TMLDI+AHIAGDD ++G DD  +DLD++MS PVSSIIGH  EGLS
Sbjct: 79  DKQTGAVRKHYIGMVTMLDIVAHIAGDDHLSGGDDVEEDLDQRMSVPVSSIIGHSFEGLS 138

Query: 145 LWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENIS-GVELVESASSYQMLTQMDLLRFM 203
           LWTL+PNTS+LDCMEV SKG+HRA++P DS++EN+S GVEL+ES+SSYQMLTQMD+LRF+
Sbjct: 139 LWTLNPNTSLLDCMEVLSKGVHRAMIPTDSQIENVSAGVELIESSSSYQMLTQMDVLRFL 198

Query: 204 MNHASELKD-ITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSS 258
            +H +EL+  + SHS+++LGA+ E ++AITE TK+IDAIKC++AA+L+A+PIV++S
Sbjct: 199 KDHGNELQSTLHSHSVQDLGAITERIYAITERTKLIDAIKCLKAAMLNALPIVRAS 254

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1113941|gb|AAA91175.1| Pv42p [Phaseolus vulgaris]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 161/239 (67%), Positives = 201/239 (84%), Gaps = 1/239 (0%)

Query: 25  LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMES 84
           L+E KV+D+   K+R+VEVP+TASLA  MN LVANK+VAVPVAAPPGQWIGAGGSMI+ES
Sbjct: 17  LKEKKVKDMMVGKKRLVEVPYTASLAQIMNTLVANKIVAVPVAAPPGQWIGAGGSMIVES 76

Query: 85  DKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLS 144
           DKQTGAVRKHYIGM+TMLDILAHIAGDD ++  D+   DLD++MS  VSSIIGH  EGLS
Sbjct: 77  DKQTGAVRKHYIGMVTMLDILAHIAGDDHLSCGDNITQDLDQRMSDSVSSIIGHSFEGLS 136

Query: 145 LWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENI-SGVELVESASSYQMLTQMDLLRFM 203
           LWTL+PNTS+LDCMEVFSKG+HRA+VP+D   EN+ SGVEL ESASSYQMLTQMD+L+F+
Sbjct: 137 LWTLNPNTSMLDCMEVFSKGVHRAMVPVDGLEENVASGVELTESASSYQMLTQMDMLKFL 196

Query: 204 MNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGATE 262
               +EL  I S S+++LGA    ++AIT+ TK++ AIKC++AA+L+AVPIV+++G  +
Sbjct: 197 HGGGAELHSILSRSVQDLGADTVQIYAITDRTKLVHAIKCLKAAMLNAVPIVRATGVGQ 255

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535823|ref|NP_001233959.1| SNF4 protein [Solanum lycopersicum] gi|7672780|gb|AAF66638.1|AF143742_1 SNF4 [Solanum lycopersicum] gi|16119022|gb|AAL14707.1|AF419320_1 SNF4 [Solanum lycopersicum]

 Score =  320 bits (820), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 172/260 (66%), Positives = 205/260 (78%), Gaps = 10/260 (3%)

Query: 1   MQQTKEQDPISSAGKHAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANK 60
           MQ T E   I +AG     +  ++L++ +V+DL  +KRR+VEVP+TA+LA T+N L+ANK
Sbjct: 1   MQATAE---IQAAGSPRRSQKHQMLKDKQVKDLIIDKRRLVEVPYTATLADTINTLMANK 57

Query: 61  VVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDA 120
           VVAVPVAAPPG WIGAGGSMI+ESDKQTGAVRKHYIGM+TMLDILA+IAG    NG  D 
Sbjct: 58  VVAVPVAAPPGHWIGAGGSMILESDKQTGAVRKHYIGMVTMLDILAYIAG----NGYRDD 113

Query: 121 PDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENIS 180
            DDL KKM  PVSSIIGHC E LSLWTLSPNTSI+DCMEVFSKGIHRA+VP++ R+EN+ 
Sbjct: 114 DDDLTKKMMVPVSSIIGHCLESLSLWTLSPNTSIVDCMEVFSKGIHRAMVPVNGRLENVV 173

Query: 181 GVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSI--RELGALNENVFAITESTKVI 238
           GVEL ESAS Y+MLTQMDLLRF +N   ELK I SH +  ++L A+ + VF +T   KVI
Sbjct: 174 GVELTESASCYRMLTQMDLLRF-LNDQQELKAIMSHKVSDKQLQAITDTVFGVTNKAKVI 232

Query: 239 DAIKCMRAALLHAVPIVKSS 258
           D IKCMR A L+AVPIV+SS
Sbjct: 233 DVIKCMRTASLNAVPIVESS 252

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218127|ref|NP_172985.1| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana] gi|75315303|sp|Q9XI37.1|PV42A_ARATH RecName: Full=SNF1-related protein kinase regulatory subunit gamma-like PV42a; Short=AtPV42a; AltName: Full=AKIN subunit gamma-like PV42a; AltName: Full=CBS domain-containing protein CBSCBS4 gi|5103830|gb|AAD39660.1|AC007591_25 Similar to gb|U40713 Pv42p gene from Phaseolus vulgaris and contains PF|00571 CBS (cystathionine beta synthase) domain [Arabidopsis thaliana] gi|66792608|gb|AAY56406.1| At1g15330 [Arabidopsis thaliana] gi|110738205|dbj|BAF01033.1| hypothetical protein [Arabidopsis thaliana] gi|111074494|gb|ABH04620.1| At1g15330 [Arabidopsis thaliana] gi|332191183|gb|AEE29304.1| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana]

 Score =  319 bits (817), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 158/242 (65%), Positives = 194/242 (80%), Gaps = 10/242 (4%)

Query: 18  ADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAG 77
           + E+   L     +DLT   RR+VEVP+TA+L+H MN LVAN + A+PVAAPPG WIGAG
Sbjct: 6   SKEDHSRLINVTAKDLTVRNRRLVEVPYTATLSHAMNTLVANSISALPVAAPPGHWIGAG 65

Query: 78  GSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIG 137
           GSMIMESDKQTG VRKHYIG+LTMLDILAHIAG+D          DLD+KMS+ VSSIIG
Sbjct: 66  GSMIMESDKQTGVVRKHYIGILTMLDILAHIAGEDS------NLSDLDRKMSSQVSSIIG 119

Query: 138 HCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMEN---ISGVELVESASSYQML 194
           HC EGLSLWTL+PNTS+L+CMEVFSKGIHRALVP++S +E+   I+GVEL+ESAS+Y+ML
Sbjct: 120 HCLEGLSLWTLNPNTSVLECMEVFSKGIHRALVPVESSIESNNTIAGVELIESASAYKML 179

Query: 195 TQMDLLRFMMN-HASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVP 253
           TQMDLLRF+ + H  +LK + S SI +LGA+N++V+AITE T V +AI  M+ ALL+AVP
Sbjct: 180 TQMDLLRFLKDHHFDDLKTVLSRSISDLGAVNDSVYAITERTTVSNAINVMKGALLNAVP 239

Query: 254 IV 255
           IV
Sbjct: 240 IV 241

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794673|emb|CAN64662.1| hypothetical protein VITISV_035347 [Vitis vinifera]

 Score =  316 bits (810), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 168/241 (69%), Positives = 197/241 (81%), Gaps = 6/241 (2%)

Query: 22  QRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMI 81
           +R LRE KV D+  EKRR+VEVP+TA+LAHT+NALVAN+ VAVPVAAPPG WIGAGGSMI
Sbjct: 7   KRGLREKKVGDVAVEKRRLVEVPYTATLAHTLNALVANRAVAVPVAAPPGHWIGAGGSMI 66

Query: 82  MESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPE 141
           MESDKQTGAVRKHYIGM+TMLDIL HI G D      +        MS PVSSIIGHC E
Sbjct: 67  MESDKQTGAVRKHYIGMVTMLDILGHIGGGDGDGFDFEGI------MSVPVSSIIGHCLE 120

Query: 142 GLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLR 201
           GLSLWTL+P+TSILDCME+FSKGIHRALVP+DS MENISGVEL ESASSY+MLTQMD+LR
Sbjct: 121 GLSLWTLNPHTSILDCMEMFSKGIHRALVPLDSHMENISGVELAESASSYRMLTQMDVLR 180

Query: 202 FMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGAT 261
           F+  HASEL  + S S+ EL  ++E VF +T+ TKV++AIKCM+ A L+AVPI+++S  T
Sbjct: 181 FLKEHASELNSVLSCSVGELXVIHETVFGVTDGTKVMEAIKCMKVASLNAVPIIEASDGT 240

Query: 262 E 262
           E
Sbjct: 241 E 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442939|ref|XP_002265369.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Vitis vinifera] gi|297743469|emb|CBI36336.3| unnamed protein product [Vitis vinifera]

 Score =  316 bits (810), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 168/237 (70%), Positives = 196/237 (82%), Gaps = 6/237 (2%)

Query: 26  REAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESD 85
           RE KV D+  EKRR+VEVP+TA+LAHT+NALVAN+VVAVPVAAPPG WIGAGGSMIMESD
Sbjct: 11  REKKVGDVAVEKRRLVEVPYTATLAHTLNALVANRVVAVPVAAPPGHWIGAGGSMIMESD 70

Query: 86  KQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSL 145
           KQTGAVRKHYIGM+TMLDIL HI G D      +        MS PVSSIIGHC EGLSL
Sbjct: 71  KQTGAVRKHYIGMVTMLDILGHIGGGDGDGFDFEGI------MSVPVSSIIGHCLEGLSL 124

Query: 146 WTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMN 205
           WTL+P+TSILDCME+FSKGIHRALVP+DS MENISGVEL ESASSY+MLTQMD+LRF+  
Sbjct: 125 WTLNPHTSILDCMEMFSKGIHRALVPLDSHMENISGVELAESASSYRMLTQMDVLRFLKE 184

Query: 206 HASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGATE 262
           HASEL  + S S+ ELG ++E VF +T+ TKV++AIKCM+ A L+AVPI+++S  TE
Sbjct: 185 HASELNSVLSCSVGELGVIHETVFGVTDGTKVMEAIKCMKVASLNAVPIIEASDGTE 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242060568|ref|XP_002451573.1| hypothetical protein SORBIDRAFT_04g004100 [Sorghum bicolor] gi|241931404|gb|EES04549.1| hypothetical protein SORBIDRAFT_04g004100 [Sorghum bicolor]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 152/261 (58%), Positives = 193/261 (73%), Gaps = 7/261 (2%)

Query: 2   QQTKEQDPISSAGKHAADENQR-------LLREAKVRDLTAEKRRIVEVPHTASLAHTMN 54
           ++ +++ P   AG      N++       +LRE KV +L   KRR+VEVP+TA+LAHT N
Sbjct: 11  ERLQQEAPHGVAGGGDVSSNKKARAGLCGVLRERKVVELARAKRRLVEVPYTATLAHTAN 70

Query: 55  ALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQM 114
           AL+A +V  V VAAPPG WIGAGGSMI+ESD  TGAVRKHYIGM+ MLDILAHIA     
Sbjct: 71  ALLAARVSGVAVAAPPGHWIGAGGSMILESDPATGAVRKHYIGMVNMLDILAHIAEASDD 130

Query: 115 NGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDS 174
             +D    DLD++M+ PVSS+IGH  EGL+LWTL P TS+LDCME FSKG+HRALVP++S
Sbjct: 131 AEADGESVDLDRRMAVPVSSVIGHSLEGLTLWTLHPTTSVLDCMETFSKGVHRALVPLES 190

Query: 175 RMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITES 234
             +N+  VELVESA  Y+MLTQMD+ RF+  H +EL+D+ S ++RELGA+N+ VFA+   
Sbjct: 191 SADNVVAVELVESAPGYRMLTQMDVARFLRAHGAELRDVLSRTVRELGAVNDTVFAVAGG 250

Query: 235 TKVIDAIKCMRAALLHAVPIV 255
           TKVIDAI+ MRAA L AVP+V
Sbjct: 251 TKVIDAIRAMRAASLTAVPVV 271

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844434|ref|XP_002890098.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297335940|gb|EFH66357.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 158/242 (65%), Positives = 191/242 (78%), Gaps = 10/242 (4%)

Query: 18  ADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAG 77
           + E+   L  A  +DLTA  RR+VEVP+TA+L+H MN LVAN + A+PVAAPPG WIGAG
Sbjct: 6   SKEDHSRLINATAKDLTARNRRLVEVPYTATLSHAMNTLVANSISALPVAAPPGHWIGAG 65

Query: 78  GSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIG 137
           GSMIMESDKQTG VRKHYIG+LTMLDILAHIAG+      D     LD+KM + VSSIIG
Sbjct: 66  GSMIMESDKQTGVVRKHYIGILTMLDILAHIAGE------DSNLSHLDRKMGSQVSSIIG 119

Query: 138 HCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRME--NIS-GVELVESASSYQML 194
           HC EGLSLWTL+PNTS+L+CMEVFSKGIHRALVP++S +E  N S GVEL+ESAS+Y+ML
Sbjct: 120 HCLEGLSLWTLNPNTSLLECMEVFSKGIHRALVPVESSIESNNTSAGVELIESASAYKML 179

Query: 195 TQMDLLRFMMN-HASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVP 253
           TQMDLLRF+ + H  +LK + S SI  L A+N++V+AITE T V +AI  M+ ALL+AVP
Sbjct: 180 TQMDLLRFLKDHHFDDLKTVLSRSISHLRAVNDSVYAITERTTVSNAINVMKGALLNAVP 239

Query: 254 IV 255
           IV
Sbjct: 240 IV 241

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2037853	352	AT1G15330 "AT1G15330" [Arabido	0.877	0.653	0.618	3.7e-71
TAIR|locus:2206265	425	CBSX6 "AT1G65320" [Arabidopsis	0.267	0.164	0.287	3e-05

TAIR|locus:2037853 AT1G15330 "AT1G15330" [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 149/241 (61%), Positives = 185/241 (76%)

Query:    19 DENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNXXXXXXXXXXXXXXXXGQWIGAGG 78
             +++ RL+     +DLT   RR+VEVP+TA+L+H MN                G WIGAGG
Sbjct:     8 EDHSRLIN-VTAKDLTVRNRRLVEVPYTATLSHAMNTLVANSISALPVAAPPGHWIGAGG 66

Query:    79 SMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGH 138
             SMIMESDKQTG VRKHYIG+LTMLDILAHIAG+D  N SD     LD+KMS+ VSSIIGH
Sbjct:    67 SMIMESDKQTGVVRKHYIGILTMLDILAHIAGEDS-NLSD-----LDRKMSSQVSSIIGH 120

Query:   139 CPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMEN---ISGVELVESASSYQMLT 195
             C EGLSLWTL+PNTS+L+CMEVFSKGIHRALVP++S +E+   I+GVEL+ESAS+Y+MLT
Sbjct:   121 CLEGLSLWTLNPNTSVLECMEVFSKGIHRALVPVESSIESNNTIAGVELIESASAYKMLT 180

Query:   196 QMDLLRFMMNHA-SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPI 254
             QMDLLRF+ +H   +LK + S SI +LGA+N++V+AITE T V +AI  M+ ALL+AVPI
Sbjct:   181 QMDLLRFLKDHHFDDLKTVLSRSISDLGAVNDSVYAITERTTVSNAINVMKGALLNAVPI 240

Query:   255 V 255
             V
Sbjct:   241 V 241

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0003006 "developmental process involved in reproduction" evidence=IMP

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0010183 "pollen tube guidance" evidence=IMP

GO:0048443 "stamen development" evidence=IMP

TAIR|locus:2206265 CBSX6 "AT1G65320" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
 Identities = 23/80 (28%), Positives = 43/80 (53%)

Query:    92 RKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPN 151
             ++ ++G+L  LDI+A +A  + +          +K M  PVS ++   P+   L  + P 
Sbjct:    66 QQRFVGILNSLDIVAFLAKTECLQE--------EKAMKIPVSEVVS--PDNTLLKQVDPG 115

Query:   152 TSILDCMEVFSKGIHRALVP 171
             T ++D +E+  +G+ R LVP
Sbjct:   116 TRLIDALEMMKQGVRRLLVP 135

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XI37	PV42A_ARATH	No assigned EC number	0.6528	0.8854	0.6590	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	2e-05
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	3e-04

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 14/119 (11%)

Query: 144 SLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFM 203
               +    S+   +E+   G    +   +     + G           +L+Q  L+ F+
Sbjct: 2   PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIG-----------ILSQRRLVEFL 50

Query: 204 MNHASELKDI---TSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG 259
             +A     +       +R+L     +V +I     +IDA+  M    + +V +V + G
Sbjct: 51  WENARSFPGLDPLYPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQG 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 228 VFAITESTKVIDAIKCMRAALLHAVPIVKSSG 259
           V +I    +V+DA K MR   +  +P+V   G
Sbjct: 3   VVSIDSDERVLDAFKLMRKNNISGLPVVDEKG 34

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.78
COG2524	294	Predicted transcriptional regulator, contains C-te	99.74
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.72
COG3620	187	Predicted transcriptional regulator with C-termina	99.55
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.53
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.51
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.48
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.48
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.46
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.44
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.42
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.41
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.4
COG2524	294	Predicted transcriptional regulator, contains C-te	99.4
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.39
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.38
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.37
COG2905	610	Predicted signal-transduction protein containing c	99.35
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.35
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.33
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.32
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.31
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.31
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.31
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.3
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.3
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.29
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.29
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.29
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.29
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.28
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.28
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.28
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.28
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.27
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.26
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.25
PRK11573	413	hypothetical protein; Provisional	99.24
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.24
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.24
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.24
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.24
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.24
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.24
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.24
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.23
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.22
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.22
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.22
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.21
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.2
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.2
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.2
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.2
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.19
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.18
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.18
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.18
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.17
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.17
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.16
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.16
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.16
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.15
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.15
COG0517	117	FOG: CBS domain [General function prediction only]	99.15
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.15
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.14
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.14
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.14
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.14
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.13
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.13
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.12
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.12
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.1
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.09
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.09
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.08
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.07
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.07
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.07
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.06
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.06
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.04
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.04
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.04
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.03
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.02
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.01
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.99
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.99
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.98
COG4109	432	Predicted transcriptional regulator containing CBS	98.97
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.95
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.94
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.94
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.92
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.9
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.89
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.88
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.88
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.87
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.87
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.87
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.85
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.85
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.84
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.84
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.81
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.8
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.78
COG0517	117	FOG: CBS domain [General function prediction only]	98.77
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.77
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.76
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.75
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.75
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.75
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.74
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.74
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.74
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.73
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.72
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.72
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.72
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.72
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.72
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.71
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.71
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.71
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.71
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	98.71
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.71
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.71
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.7
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.7
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.69
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.69
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.69
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.68
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.66
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.66
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.65
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.63
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.63
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.62
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.6
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.6
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.6
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.6
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.59
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.55
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.54
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.53
COG2905	610	Predicted signal-transduction protein containing c	98.53
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.5
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.5
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.49
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.48
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.46
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.43
COG3620	187	Predicted transcriptional regulator with C-termina	98.43
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.42
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.42
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.41
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.39
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.37
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.37
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.34
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.34
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.34
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.32
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.31
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.3
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.3
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.25
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.2
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.2
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.16
PRK11573	413	hypothetical protein; Provisional	98.15
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.11
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.1
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.08
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.97
COG1253	429	TlyC Hemolysins and related proteins containing CB	97.95
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.82
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.81
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	97.78
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.57
COG4109	432	Predicted transcriptional regulator containing CBS	97.45
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.02
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	97.01
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	96.85
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	96.81
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	96.77
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	96.56
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	96.47
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	96.06
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	90.98
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	88.07
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	87.2
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	87.08
KOG2118	498	consensus Predicted membrane protein, contains two	83.54
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	81.56

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.78  E-value=4.6e-18  Score=159.26  Aligned_cols=215  Identities=26%  Similarity=0.379  Sum_probs=167.7

Q ss_pred             ccCCcchHHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCc
Q 046022           12 SAGKHAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAV   91 (262)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~   91 (262)
                      .+-+.+...+.+|+..+++.+++.....++.++...++.+|+.+|..+...++|+|+...                    
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~--------------------  109 (381)
T KOG1764|consen   50 TAESNAVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKK--------------------  109 (381)
T ss_pred             ccccchhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCcc--------------------
Confidence            345566677789999999999998888999999999999999999999999999999763                    


Q ss_pred             CCeEEEEEeHHHHHHHHhCCCC--CCCCCCC-cchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCe
Q 046022           92 RKHYIGMLTMLDILAHIAGDDQ--MNGSDDA-PDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHR  167 (262)
Q Consensus        92 ~~~~vGivs~~Dil~~l~~~~~--l~~~~~~-~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~r  167 (262)
                       ++++|++++.|++.++.....  ....+.. ..+..-...+++..+....... ++..+.|..+++++...+. .++||
T Consensus       110 -~~~~g~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~p~~s~l~~~~~l~~~~~~r  187 (381)
T KOG1764|consen  110 -QQFVGMLTITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRREVECLLKETLKP-PFVSISPESSLLDAVLLLIKSRIHR  187 (381)
T ss_pred             -ceeEEEEEHHHHHHHHHHhhccCCcHHHHhhhhhhhccccchhhhhhccccCC-CceeecCcHHHHHHHHHHHhCCccc
Confidence             789999999999998886321  1000000 0010001123333333322222 2488999999999999777 79999


Q ss_pred             eEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccc--hhhhccccchhcccCc-CeEEEeCCCcHHHHHHHH
Q 046022          168 ALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASEL--KDITSHSIRELGALNE-NVFAITESTKVIDAIKCM  244 (262)
Q Consensus       168 v~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l--~~l~~~ti~eL~~~~~-~v~tv~~~~~~~~A~~lM  244 (262)
                      +||. |.+.           +.+.+++||..|++|++.+.+.+  ..+..+++.+|+++.- ++.++.+++++++|+++|
T Consensus       188 vpv~-d~~~-----------~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m  255 (381)
T KOG1764|consen  188 VPVI-DPET-----------GEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIM  255 (381)
T ss_pred             eeee-cccc-----------cceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHH
Confidence            9994 4322           34569999999999999987665  5788999999999885 499999999999999999


Q ss_pred             HhCCCcEEEEEcCCCC
Q 046022          245 RAALLHAVPIVKSSGA  260 (262)
Q Consensus       245 ~~~~isav~VVd~~g~  260 (262)
                      ..++++++||||.+|.
T Consensus       256 ~~~~is~lpvV~~~g~  271 (381)
T KOG1764|consen  256 SERRISALPVVDENGK  271 (381)
T ss_pred             HhcCcCcceEEcCCCc
Confidence            9999999999999885

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.74  E-value=1.3e-17  Score=145.49  Aligned_cols=122  Identities=22%  Similarity=0.422  Sum_probs=104.7

Q ss_pred             hcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHH
Q 046022           26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDIL  105 (262)
Q Consensus        26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil  105 (262)
                      -..+|.++|  +++++++.+++|+.+|.+.|.+++|.++||+|.                       ++++||++..||.
T Consensus       170 Pk~~V~~~~--s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-----------------------dk~vGiit~~dI~  224 (294)
T COG2524         170 PKEKVKNLM--SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-----------------------DKIVGIITLSDIA  224 (294)
T ss_pred             Ccchhhhhc--cCCceEecCCccHHHHHHHHHHcCccCCceecC-----------------------CceEEEEEHHHHH
Confidence            345789998  468999999999999999999999999999985                       4899999999999


Q ss_pred             HHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccccccee
Q 046022          106 AHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVEL  184 (262)
Q Consensus       106 ~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~  184 (262)
                      ..+.+.               .++.+|+++|..   +  ++++..|+.+.||+++|. +++.|+.|. +.+         
T Consensus       225 ~aia~g---------------~~~~kV~~~M~k---~--vitI~eDe~i~dAir~M~~~nVGRLlV~-ds~---------  274 (294)
T COG2524         225 KAIANG---------------NLDAKVSDYMRK---N--VITINEDEDIYDAIRLMNKNNVGRLLVT-DSN---------  274 (294)
T ss_pred             HHHHcC---------------CccccHHHHhcc---C--CceEcCchhHHHHHHHHHhcCcceEEEE-ccC---------
Confidence            998863               124589999973   4  799999999999999999 799999996 322         


Q ss_pred             cccCCeeeEecHHHHHHHHHh
Q 046022          185 VESASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       185 ~~~~~~~giITqsDIir~L~~  205 (262)
                         |+++||||++||++.|+.
T Consensus       275 ---gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         275 ---GKPVGIITRTDILTRIAG  292 (294)
T ss_pred             ---CcEEEEEehHHHHHHhhc
Confidence               456799999999998764

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.72  E-value=5.6e-17  Score=144.02  Aligned_cols=139  Identities=22%  Similarity=0.376  Sum_probs=111.8

Q ss_pred             HHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEE
Q 046022           19 DENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGM   98 (262)
Q Consensus        19 ~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGi   98 (262)
                      ..+++...+.++.|||  ++.+++++.++|+.+|.++|.+|++..+||+|+.                      .+++|+
T Consensus       236 qa~~R~~~~LtcadIM--SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~----------------------~rl~Gi  291 (382)
T COG3448         236 QALRRRMGELTCADIM--SRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH----------------------RRLVGI  291 (382)
T ss_pred             HHHHHHhccccHHHhc--CccceecCCcCChHHHHHHHHHcCcccccccccc----------------------cceeee
Confidence            3446777899999999  5799999999999999999999999999999975                      589999


Q ss_pred             EeHHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCc
Q 046022           99 LTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRME  177 (262)
Q Consensus        99 vs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~  177 (262)
                      |+.+|+++..... .+       ..+......+|+.+|+ ++    +.++.|+++..+++.+|. .|.|.+||. |..  
T Consensus       292 Vt~~dl~~~a~~~-p~-------qrlr~~~~~~vk~imt-~~----v~tv~pdtpa~~lvp~lad~g~H~lpvl-d~~--  355 (382)
T COG3448         292 VTQRDLLKHARPS-PF-------QRLRFLRPPTVKGIMT-TP----VVTVRPDTPAVELVPRLADEGLHALPVL-DAA--  355 (382)
T ss_pred             eeHHHHhhccCcc-hH-------HHhhccCCCccccccc-Cc----ceeecCCCcHHHHHHHhhcCCcceeeEE-cCC--
Confidence            9999988855431 11       0111112457999998 32    789999999999999998 799999995 533  


Q ss_pred             ccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          178 NISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       178 ~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                                |+.+|||||+|++-.++.+.
T Consensus       356 ----------g~lvGIvsQtDliaal~r~~  375 (382)
T COG3448         356 ----------GKLVGIVSQTDLIAALYRNW  375 (382)
T ss_pred             ----------CcEEEEeeHHHHHHHHHHHH
Confidence                      34569999999999988753

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.55  E-value=2.7e-14  Score=116.68  Aligned_cols=123  Identities=17%  Similarity=0.285  Sum_probs=98.5

Q ss_pred             hcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHH
Q 046022           26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDIL  105 (262)
Q Consensus        26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil  105 (262)
                      ...++..||.  +|++++++++++.+|+++|.+++++.+||+++                       ++++|-||..||+
T Consensus        63 ~~ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-----------------------~k~VGsItE~~iv  117 (187)
T COG3620          63 TRITAKTIMH--SPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-----------------------DKVVGSITENDIV  117 (187)
T ss_pred             ceEeHhhhcc--CCeeEECchhhHHHHHHHHHHcCCccCceeeC-----------------------CeeeeeecHHHHH
Confidence            3467999995  59999999999999999999999999999986                       4899999999999


Q ss_pred             HHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCeeEeecCCCCcccccceec
Q 046022          106 AHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELV  185 (262)
Q Consensus       106 ~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv~V~~~~~~~~~~g~~~~  185 (262)
                      +.+++..            +..-...|+++|+.    + |.+|+++++|..+-.++. ....+.|..+            
T Consensus       118 ~~~le~~------------e~i~~~~vr~vM~e----~-fP~Vs~~~~l~vI~~LL~-~~~AVlV~e~------------  167 (187)
T COG3620         118 RALLEGM------------ESIRSLRVREVMGE----P-FPTVSPDESLNVISQLLE-EHPAVLVVEN------------  167 (187)
T ss_pred             HHHhccc------------cchhhhhHHHHhcC----C-CCcCCCCCCHHHHHHHHh-hCCeEEEEeC------------
Confidence            9998741            11224479999982    2 688999999977766654 4456777522            


Q ss_pred             ccCCeeeEecHHHHHHHHHh
Q 046022          186 ESASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       186 ~~~~~~giITqsDIir~L~~  205 (262)
                        |+.+||||+.||++++..
T Consensus       168 --G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         168 --GKVVGIITKADIMKLLAG  185 (187)
T ss_pred             --CceEEEEeHHHHHHHHhc
Confidence              344699999999999865

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1.3e-13  Score=104.84  Aligned_cols=96  Identities=26%  Similarity=0.442  Sum_probs=79.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      .++++++++|+.+|++.|.++++.++||+++++                     ++++|++|..|+++.+.         
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~---------------------~~~~Givt~~Dl~~~~~---------   51 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRK---------------------QQFVGMLTITDFILILR---------   51 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCC---------------------CEEEEEEEHHHHhhhee---------
Confidence            578999999999999999999999999998642                     58999999999764210         


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                                                +.++.|+++|.+|+++|. ++++++||+.++ .           ++.+|+||++
T Consensus        52 --------------------------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~-----------~~~~giit~~   93 (98)
T cd04618          52 --------------------------LVSIHPERSLFDAALLLLKNKIHRLPVIDPS-T-----------GTGLYILTSR   93 (98)
T ss_pred             --------------------------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECC-C-----------CCceEEeehh
Confidence                                      257999999999999998 799999996332 1           2345999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      ||+++
T Consensus        94 d~~~~   98 (98)
T cd04618          94 RILKF   98 (98)
T ss_pred             hhhcC
Confidence            99874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.51  E-value=4.9e-13  Score=126.74  Aligned_cols=161  Identities=17%  Similarity=0.289  Sum_probs=122.9

Q ss_pred             hhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHH
Q 046022           25 LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDI  104 (262)
Q Consensus        25 l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Di  104 (262)
                      |.+++|+|+|++..++++++.++|+.++++.+.+++++++||++++                     .++++|+|+..|+
T Consensus       188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~---------------------~d~ivGiv~~kDl  246 (408)
T TIGR03520       188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET---------------------IDNITGVLYIKDL  246 (408)
T ss_pred             cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC---------------------CCceEEEEEHHHH
Confidence            4678999999877789999999999999999999999999999854                     2589999999999


Q ss_pred             HHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccce
Q 046022          105 LAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVE  183 (262)
Q Consensus       105 l~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~  183 (262)
                      +.++.. .                ..++.++|.    .  +..+.+++++.++++.|. ++.|.++|+ |+.        
T Consensus       247 l~~~~~-~----------------~~~l~~~~~----~--~~~Vpe~~~l~~ll~~m~~~~~~~aiVv-DE~--------  294 (408)
T TIGR03520       247 LPHLNK-K----------------NFDWQSLLR----E--PYFVPENKKLDDLLRDFQEKKNHLAIVV-DEY--------  294 (408)
T ss_pred             HhHhcc-C----------------CCCHHHHcC----C--CeEeCCCCcHHHHHHHHHhcCceEEEEE-cCC--------
Confidence            876432 1                114667775    2  478999999999999999 677888885 432        


Q ss_pred             ecccCCeeeEecHHHHHHHHHhhc-ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHh
Q 046022          184 LVESASSYQMLTQMDLLRFMMNHA-SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRA  246 (262)
Q Consensus       184 ~~~~~~~~giITqsDIir~L~~~~-~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~  246 (262)
                          |...||||.+||++.+...+ ++... ....+..   .+.....++.+.++.+..+.|.-
T Consensus       295 ----G~~~GiVT~eDileeivgei~de~d~-~~~~i~~---~~~~~~~v~G~~~l~~l~~~l~~  350 (408)
T TIGR03520       295 ----GGTSGLVTLEDIIEEIVGDISDEFDD-EDLIYSK---IDDNNYVFEGKTSLKDFYKILKL  350 (408)
T ss_pred             ----CCEEEEEEHHHHHHHHhCCCCCcCCc-CccceEE---eCCCeEEEEeccCHHHHHHHhCC
Confidence                23459999999999987654 22211 1112222   23557888999999999998843

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.48  E-value=9.5e-13  Score=119.61  Aligned_cols=162  Identities=15%  Similarity=0.324  Sum_probs=120.8

Q ss_pred             hhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHH
Q 046022           25 LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDI  104 (262)
Q Consensus        25 l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Di  104 (262)
                      |.+.+|+|+|+...++++++.++|+.++++.+.+++.+.+||++.+.                     ++++|+|+..|+
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~---------------------d~iiGiv~~kDl  122 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK---------------------DHIEGILMAKDL  122 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCC---------------------CcEEEEEEHHHH
Confidence            35669999997655899999999999999999999999999998642                     589999999999


Q ss_pred             HHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccce
Q 046022          105 LAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVE  183 (262)
Q Consensus       105 l~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~  183 (262)
                      +.++.....               ..++.++|..      .+++.+++++.++++.|. ++.|.+||+ ++.        
T Consensus       123 l~~~~~~~~---------------~~~l~~l~r~------~~~V~e~~~l~~~L~~m~~~~~~~a~Vv-De~--------  172 (292)
T PRK15094        123 LPFMRSDAE---------------AFSMDKVLRQ------AVVVPESKRVDRMLKEFRSQRYHMAIVI-DEF--------  172 (292)
T ss_pred             HhHhhccCC---------------cCCHHHHcCC------CcCcCCCCcHHHHHHHHHhcCCEEEEEE-eCC--------
Confidence            876532110               1236777751      357999999999999998 688889986 422        


Q ss_pred             ecccCCeeeEecHHHHHHHHHhhc-ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHH
Q 046022          184 LVESASSYQMLTQMDLLRFMMNHA-SELKDITSHSIRELGALNENVFAITESTKVIDAIKCM  244 (262)
Q Consensus       184 ~~~~~~~~giITqsDIir~L~~~~-~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM  244 (262)
                          |...||||.+||++.+...+ ++........+..   ....-+.|+..+++.+..+.+
T Consensus       173 ----G~viGiVTleDIle~ivGei~de~d~~~~~~i~~---~~~~~~~v~G~~~l~dl~~~l  227 (292)
T PRK15094        173 ----GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQ---LSRHTWTVRALASIEDFNEAF  227 (292)
T ss_pred             ----CCEEEEeEHHHHHHHHhCCCccccccccccccEE---eCCCeEEEEeccCHHHHHHHh
Confidence                23469999999999998765 2222111112333   234568899999988888776

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=9.3e-13  Score=102.53  Aligned_cols=118  Identities=19%  Similarity=0.312  Sum_probs=85.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++++.+|++.|.++++.++||++.+                      ++++|+++..|++.++.... ..   
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~----------------------~~~~Giv~~~dl~~~~~~~~-~~---   55 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDEN----------------------GKVVDVYSRFDVINLAKEGA-YN---   55 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC----------------------CeEEEEEeHHHHHHHHhcCc-cc---
Confidence            57899999999999999999999999999864                      68999999999997654321 10   


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                      .........+  ....+|.   .+  +.++.+++++.++++.|. ++++++||+ +++            +..+|+||++
T Consensus        56 ~~~~~~~~~~--~~~~~~~---~~--~~~v~~~~~l~~~~~~m~~~~~~~l~Vv-d~~------------~~~~Givt~~  115 (120)
T cd04641          56 NLDLTVGEAL--ERRSQDF---EG--VRTCSPDDCLRTIFDLIVKARVHRLVVV-DEN------------KRVEGIISLS  115 (120)
T ss_pred             cccCCHHHHH--hhcccCC---CC--CeEEcCCCcHHHHHHHHHhcCccEEEEE-CCC------------CCEEEEEEHH
Confidence            0000111100  1122332   12  578999999999999998 799999996 322            2345999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      |+++|
T Consensus       116 di~~~  120 (120)
T cd04641         116 DILQF  120 (120)
T ss_pred             HhhcC
Confidence            99876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.46  E-value=5.8e-13  Score=122.29  Aligned_cols=123  Identities=20%  Similarity=0.229  Sum_probs=97.8

Q ss_pred             hcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHH
Q 046022           26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDIL  105 (262)
Q Consensus        26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil  105 (262)
                      ..++|+|+|...++++++++++|+.+|++.|.++++..+||++++                      ++++|+|+..|+.
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~----------------------g~lvGivt~~Dl~  257 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN----------------------MKIEGIFTDGDLR  257 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC----------------------CcEEEEEecHHHH
Confidence            566799999643378899999999999999999998888888764                      6899999999987


Q ss_pred             HHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccccccee
Q 046022          106 AHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVEL  184 (262)
Q Consensus       106 ~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~  184 (262)
                      +.+.....             ....+|.++|..   +  +.++.+++++.+|++.|. ++++++||+ +++         
T Consensus       258 ~~~~~~~~-------------~~~~~v~~im~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv-~~~---------  309 (326)
T PRK10892        258 RVFDMGID-------------LRQASIADVMTP---G--GIRVRPGILAVDALNLMQSRHITSVLVA-DGD---------  309 (326)
T ss_pred             HHHhcCCC-------------cccCCHHHhcCC---C--CEEECCCCCHHHHHHHHHHCCCcEEEEe-eCC---------
Confidence            65442111             113479999972   3  588999999999999998 799999996 321         


Q ss_pred             cccCCeeeEecHHHHHHH
Q 046022          185 VESASSYQMLTQMDLLRF  202 (262)
Q Consensus       185 ~~~~~~~giITqsDIir~  202 (262)
                          +++||||++||+++
T Consensus       310 ----~lvGiit~~dil~~  323 (326)
T PRK10892        310 ----HLLGVLHMHDLLRA  323 (326)
T ss_pred             ----EEEEEEEhHHhHhc
Confidence                23599999999984

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.44  E-value=1.6e-12  Score=100.06  Aligned_cols=109  Identities=17%  Similarity=0.201  Sum_probs=86.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++++.+|++.|.+++...+||++++                      ++++|+++..|+... ...       
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~----------------------~~~~G~v~~~dl~~~-~~~-------   51 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEE----------------------NKVLGQVTLSDLLEI-GPN-------   51 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC----------------------CCEEEEEEHHHHHhh-ccc-------
Confidence            35789999999999999999999999999864                      689999999998763 211       


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                             .....++.++|..   .  +.++.+++++.+|+++|. ++.+++||+ +++            +..+|+||++
T Consensus        52 -------~~~~~~v~~~~~~---~--~~~v~~~~~l~~al~~m~~~~~~~lpVv-d~~------------~~~~Giit~~  106 (111)
T cd04603          52 -------DYETLKVCEVYIV---P--VPIVYCDSKVTDLLRIFRETEPPVVAVV-DKE------------GKLVGTIYER  106 (111)
T ss_pred             -------cccccChhheeec---C--CcEECCCCcHHHHHHHHHHcCCCeEEEE-cCC------------CeEEEEEEhH
Confidence                   0112468888862   2  467999999999999998 788999996 432            2345999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      ||++|
T Consensus       107 di~~~  111 (111)
T cd04603         107 ELLRF  111 (111)
T ss_pred             HhhcC
Confidence            99875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.42  E-value=6e-12  Score=121.30  Aligned_cols=128  Identities=20%  Similarity=0.207  Sum_probs=103.8

Q ss_pred             hHHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEE
Q 046022           18 ADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIG   97 (262)
Q Consensus        18 ~~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vG   97 (262)
                      ...+.+.+...+++++|.  ++++++++++|+.+|++.|.++++.++||+|++                      ++++|
T Consensus        79 ~~~q~~~l~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~----------------------gklvG  134 (479)
T PRK07807         79 IDVVAEVVAWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE----------------------GRPVG  134 (479)
T ss_pred             HHHHHHHHhhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEECCC----------------------CeEEE
Confidence            344567888899999995  466799999999999999999999999999864                      68999


Q ss_pred             EEeHHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCC
Q 046022           98 MLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRM  176 (262)
Q Consensus        98 ivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~  176 (262)
                      +|+..|+.. . .                 ...+++++|+.   +  +.++.+++++.+|+++|. ++++++||+ +++ 
T Consensus       135 IVT~rDL~~-~-~-----------------~~~~V~diMt~---~--~itV~~d~sL~eAl~lM~~~~i~~LPVV-D~~-  188 (479)
T PRK07807        135 VVTEADCAG-V-D-----------------RFTQVRDVMST---D--LVTLPAGTDPREAFDLLEAARVKLAPVV-DAD-  188 (479)
T ss_pred             EEeHHHHhc-C-c-----------------cCCCHHHhccC---C--ceEECCCCcHHHHHHHHHhcCCCEEEEE-cCC-
Confidence            999999731 1 0                 01468999972   3  689999999999999988 799999996 422 


Q ss_pred             cccccceecccCCeeeEecHHHHHHHHHhh
Q 046022          177 ENISGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       177 ~~~~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                                 ++.+|+||++||+++....
T Consensus       189 -----------g~lvGIIT~~DIl~~~~~~  207 (479)
T PRK07807        189 -----------GRLVGVLTRTGALRATIYT  207 (479)
T ss_pred             -----------CeEEEEEEHHHHHHHhhCC
Confidence                       2345999999999987654

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.41  E-value=1.4e-12  Score=103.02  Aligned_cols=112  Identities=19%  Similarity=0.288  Sum_probs=87.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      ++++++++.|+.+|++.|.++++..+||++++                      ++++|+++..|++..+.+...     
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~----------------------~~~~Gii~~~dl~~~~~~~~~-----   55 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES----------------------GKILGMVTLGNLLSSLSSGKV-----   55 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC----------------------CCEEEEEEHHHHHHHHHHhcc-----
Confidence            56789999999999999999999999999864                      589999999999987664210     


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh----------cCCCeeEeecCCCCcccccceecccC
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS----------KGIHRALVPMDSRMENISGVELVESA  188 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~----------~g~~rv~V~~~~~~~~~~g~~~~~~~  188 (262)
                              ....+|+++|..   +  +.++.+++++.+++++|.          .+.+++||+ ++            ++
T Consensus        56 --------~~~~~v~~im~~---~--~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~-~~------------~~  109 (124)
T cd04608          56 --------QPSDPVSKALYK---Q--FKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGK-EK------------QE  109 (124)
T ss_pred             --------CCCCcHHHHhhc---c--ceecCCCCCHHHHHhhcccCCceEEEecccccccccc-cc------------cc
Confidence                    124589999973   3  578999999999999653          244555553 32            23


Q ss_pred             CeeeEecHHHHHHHH
Q 046022          189 SSYQMLTQMDLLRFM  203 (262)
Q Consensus       189 ~~~giITqsDIir~L  203 (262)
                      +.+||||..||++|+
T Consensus       110 ~~~Givt~~Dl~~~~  124 (124)
T cd04608         110 KPIGIVTKIDLLSYI  124 (124)
T ss_pred             ceEEEEehhHhhhhC
Confidence            456999999999985

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=4.2e-12  Score=99.79  Aligned_cols=126  Identities=21%  Similarity=0.334  Sum_probs=90.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++.+++++|+.+|++.|.++++..+||++++                      ++++|+++..|+...+..........
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~----------------------~~~~G~it~~dl~~~~~~~~~~~~~~   59 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDN----------------------GKLTGIVTRHDIVDFVVRDRDKARTG   59 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC----------------------CcEEEEEEHHHHHHHHhhhhhhcchh
Confidence            45688999999999999999999999999875                      58999999999987654321000000


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                      ............++.++|..   +  +.++.+++++.++++.|. ++.+.+||..+++           +++.+|+||++
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~---~--~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~-----------~~~~~Gvit~~  123 (128)
T cd04632          60 DRSGEKERMLDLPVYDAMSS---P--VITASPNDSVRDAVDRMLENDDSSVVVVTPDD-----------DTKVVGILTKK  123 (128)
T ss_pred             hhhhhhhhhccCcHHHHhcC---C--CceECCCCcHHHHHHHHHhCCCCeEeEeccCC-----------CCcEEEEEEhH
Confidence            00001112334578888862   2  578999999999999888 6788888853212           13456999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      ||++|
T Consensus       124 di~~~  128 (128)
T cd04632         124 DVLRA  128 (128)
T ss_pred             hhhcC
Confidence            99874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.40  E-value=1.4e-12  Score=114.27  Aligned_cols=106  Identities=24%  Similarity=0.387  Sum_probs=92.6

Q ss_pred             hccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022          128 MSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       128 ~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                      .+.+|.++|+.   .  ++++.+++||.+|..+|. +|+|..||+.++   ++           +||||-+||...+++.
T Consensus       170 Pk~~V~~~~s~---~--~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d---k~-----------vGiit~~dI~~aia~g  230 (294)
T COG2524         170 PKEKVKNLMSK---K--LITVRPDDTLREAAKLFYEKGIRGAPVVDDD---KI-----------VGIITLSDIAKAIANG  230 (294)
T ss_pred             CcchhhhhccC---C--ceEecCCccHHHHHHHHHHcCccCCceecCC---ce-----------EEEEEHHHHHHHHHcC
Confidence            47789999983   3  799999999999999998 899999996443   23           5999999999999886


Q ss_pred             cccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          207 ASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       207 ~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      .      .+.++++  +|.+++++|+.|+.+.||+++|..+|++.+-|+|++|.
T Consensus       231 ~------~~~kV~~--~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gk  276 (294)
T COG2524         231 N------LDAKVSD--YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGK  276 (294)
T ss_pred             C------ccccHHH--HhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCc
Confidence            2      2567888  59999999999999999999999999999999998885

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.39  E-value=3.7e-12  Score=116.57  Aligned_cols=122  Identities=23%  Similarity=0.276  Sum_probs=99.2

Q ss_pred             cceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022           27 EAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA  106 (262)
Q Consensus        27 ~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~  106 (262)
                      ..+|+|+|..+++++++++++|+.+|++.|.+++...+||+|++                      ++++|+|+..|+.+
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~----------------------g~~iG~vt~~dl~~  253 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ----------------------QQVQGVFTDGDLRR  253 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC----------------------CcEEEEecHHHHHH
Confidence            67899999654348899999999999999999999999999965                      68999999999887


Q ss_pred             HHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceec
Q 046022          107 HIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELV  185 (262)
Q Consensus       107 ~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~  185 (262)
                      .+....              ....+|.++|..   +  +.++.+++++.+|++.|. .++.++||+ +++          
T Consensus       254 ~~~~~~--------------~~~~~v~~im~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~~----------  303 (321)
T PRK11543        254 WLVGGG--------------ALTTPVNEAMTR---G--GTTLQAQSRAIDAKEILMKRKITAAPVV-DEN----------  303 (321)
T ss_pred             HHhCCC--------------CcCCcHHHhcCC---C--CEEECCCCCHHHHHHHHHHcCCCEEEEE-cCC----------
Confidence            665421              123468899972   3  578999999999999998 799999996 422          


Q ss_pred             ccCCeeeEecHHHHHHH
Q 046022          186 ESASSYQMLTQMDLLRF  202 (262)
Q Consensus       186 ~~~~~~giITqsDIir~  202 (262)
                        ++.+|+||+.||++.
T Consensus       304 --~~lvGvIt~~di~~~  318 (321)
T PRK11543        304 --GKLTGAINLQDFYQA  318 (321)
T ss_pred             --CeEEEEEEHHHHHhc
Confidence              133599999999873

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=6.5e-12  Score=97.58  Aligned_cols=115  Identities=17%  Similarity=0.213  Sum_probs=89.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++++.+|++.|.++++.++||+|.+                      ++++|+|+..|++........     
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~----------------------~~~~Givt~~dl~~~~~~~~~-----   54 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED----------------------GDLVGVVSRKDLLKASIGGAD-----   54 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC----------------------CCEEEEEEHHHHHHHHHcCCC-----
Confidence            46799999999999999999999999999864                      589999999999887753211     


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                              ....+++++|.. .+.  +.++.+++++.+++++|. ++++++||+.+++.          +++.+|+||++
T Consensus        55 --------~~~~~~~~~~~~-~~~--~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~----------~~~l~Gvit~~  113 (118)
T cd04617          55 --------LQKVPVGVIMTR-MPN--ITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDE----------GLEVIGRITKT  113 (118)
T ss_pred             --------ccCCCHHHHhCC-CCC--cEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCc----------cceEEEEEEhh
Confidence                    112357788862 123  578999999999999988 68899999643210          12346999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      ||++
T Consensus       114 ~l~~  117 (118)
T cd04617         114 NITK  117 (118)
T ss_pred             heec
Confidence            9976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.37  E-value=5.4e-12  Score=124.39  Aligned_cols=132  Identities=18%  Similarity=0.196  Sum_probs=105.2

Q ss_pred             HHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeH
Q 046022           22 QRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTM  101 (262)
Q Consensus        22 ~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~  101 (262)
                      +..+..++++|+|.  ++..++++++++.+|++.|.+++...+||+|++                      ++++|+|+.
T Consensus       441 ~~~L~~~~V~dim~--~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~----------------------g~lvGiVt~  496 (574)
T PRK01862        441 RERLRTTQMRELIQ--PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD----------------------GRFRGAVAL  496 (574)
T ss_pred             hhHHhhCcHHHHhc--CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC----------------------CeEEEEEEH
Confidence            45788899999995  356789999999999999999999999999865                      689999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccc
Q 046022          102 LDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENIS  180 (262)
Q Consensus       102 ~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~  180 (262)
                      .|+.+.+.....             ....++.++|..   +  +.++++++++.++++.|. ++.+++||+.+++.    
T Consensus       497 ~dL~~~l~~~~~-------------~~~~~v~dim~~---~--~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~----  554 (574)
T PRK01862        497 KDITSDLLDKRD-------------TTDKTAADYAHT---P--FPLLTPDMPLGDALEHFMAFQGERLPVVESEAS----  554 (574)
T ss_pred             HHHHHHhhcccc-------------cccchHHHhccC---C--CeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCC----
Confidence            999886653211             012368888862   3  578999999999999998 68999999643321    


Q ss_pred             cceecccCCeeeEecHHHHHHHHHhh
Q 046022          181 GVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       181 g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                             ++..|+||+.|+++++.+.
T Consensus       555 -------~~liGvIt~~DIl~~l~~~  573 (574)
T PRK01862        555 -------PTLAGVVYKTSLLDAYRRM  573 (574)
T ss_pred             -------CeEEEEEEHHHHHHHHHhh
Confidence                   2346999999999988653

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.35  E-value=2.7e-12  Score=122.78  Aligned_cols=123  Identities=19%  Similarity=0.313  Sum_probs=102.5

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      +++++++..  +.+++++.+||.+|...|.+++++++-+++..                      +...||||..|+...
T Consensus       149 trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~----------------------~~~~GIvT~~dl~~~  204 (610)
T COG2905         149 TRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDS----------------------GPLLGIVTRKDLRSR  204 (610)
T ss_pred             HHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCC----------------------CCccceeehHHHHHH
Confidence            468888854  56799999999999999999999988888764                      578899999999998


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      +..+..             -...+|+++|+. +    ++++++++-+++||-+|. +++||+||..+             
T Consensus       205 v~~~g~-------------~~~~~V~evmT~-p----~~svd~~~~~feAml~m~r~~I~hl~V~e~-------------  253 (610)
T COG2905         205 VIADGR-------------SKTQKVSEVMTS-P----VISVDRGDFLFEAMLMMLRNRIKHLPVTED-------------  253 (610)
T ss_pred             HHhcCC-------------Ccccchhhhhcc-C----ceeecCcchHHHHHHHHHHhCCceeeeecC-------------
Confidence            886321             113589999983 2    799999999999999998 79999999643             


Q ss_pred             cCCeeeEecHHHHHHHHHhh
Q 046022          187 SASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~~~  206 (262)
                       |+++||||-+||++.+..+
T Consensus       254 -gq~~Gilt~~dIl~l~s~~  272 (610)
T COG2905         254 -GQPLGILTLTDILRLFSQN  272 (610)
T ss_pred             -CeeeEEeeHHHHHHhhCCC
Confidence             3457999999999987654

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.9e-11  Score=94.33  Aligned_cols=111  Identities=22%  Similarity=0.344  Sum_probs=88.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      .+.++++++|+.+|++.|.+++...+||+|++                      ++++|+++..|+.+.+.....     
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~----------------------g~~~G~vt~~dl~~~~~~~~~-----   54 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH----------------------GKLAGVLTKTDVVRQMGRCGG-----   54 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC----------------------CCEEEEEehHHHHHHHhhcCC-----
Confidence            36789999999999999999999999999865                      589999999999886643110     


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                             .....++.++|..   +  +.++.+++++.+|++.|. ++.+++||+ +++            +..+|+||++
T Consensus        55 -------~~~~~~v~~~~~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~~------------~~~~Gvi~~~  109 (114)
T cd04619          55 -------PGCTAPVENVMTR---A--VVSCRPGDLLHDVWQVMKQRGLKNIPVV-DEN------------ARPLGVLNAR  109 (114)
T ss_pred             -------CcccCCHHHHhcC---C--CeeECCCCCHHHHHHHHHHcCCCeEEEE-CCC------------CcEEEEEEhH
Confidence                   1123478888862   3  578999999999999998 799999996 322            2345999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      |+++
T Consensus       110 dl~~  113 (114)
T cd04619         110 DALK  113 (114)
T ss_pred             hhcc
Confidence            9874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=2.9e-11  Score=93.12  Aligned_cols=111  Identities=21%  Similarity=0.346  Sum_probs=88.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++++.+|++.|.++++..+||++.++                     ++++|+++..|+++++.....     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~---------------------~~~~G~v~~~dl~~~~~~~~~-----   55 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRE---------------------SDAYGIVTMRDILKKVVAEGR-----   55 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCC---------------------CcEEEEEehHHHHHHHHhCCC-----
Confidence            567899999999999999999999999998641                     489999999999987654210     


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                             .....++.++|..   +  +.++.+++++.++++.|. .+.+++||+ +++  +           +.|+||+.
T Consensus        56 -------~~~~~~v~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-d~~--~-----------~~Gvi~~~  109 (114)
T cd04630          56 -------DPDRVNVYEIMTK---P--LISVSPDMDIKYCARLMERTNIRRAPVV-ENN--E-----------LIGIISLT  109 (114)
T ss_pred             -------CCCccCHHHHhcC---C--CeeECCCCCHHHHHHHHHHcCCCEeeEe-eCC--E-----------EEEEEEHH
Confidence                   0112468888862   3  688999999999999998 588999995 331  2           35999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      ||++
T Consensus       110 dl~~  113 (114)
T cd04630         110 DIFL  113 (114)
T ss_pred             Hhhc
Confidence            9975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.32  E-value=3.2e-11  Score=92.83  Aligned_cols=112  Identities=17%  Similarity=0.274  Sum_probs=87.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +..++++++++.+|++.|.++++..+||+++.                      ++++|+++..|+...+.+...     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~----------------------~~~~G~v~~~dl~~~~~~~~~-----   54 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD----------------------GGVVGIITLPDLLRALEADEA-----   54 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC----------------------CCEEEEEEHHHHHHHHhcccc-----
Confidence            45688999999999999999999999999864                      589999999999887654211     


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                              ....++.++|..   +  +.++.+++++.++++.|. ++.+++||+.++..           +...|+||++
T Consensus        55 --------~~~~~~~~~~~~---~--~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~-----------~~~~Gvit~~  110 (115)
T cd04593          55 --------GEPSAVDEVATP---P--LLTVHPDEPLAHALDRMASRGLRQLPVVDRGNP-----------GQVLGLLTRE  110 (115)
T ss_pred             --------cccccHHHhccC---C--ceEECCCCCHHHHHHHHHHcCCceeeEEeCCCC-----------CeEEEEEEhH
Confidence                    012347777752   3  578999999999999998 78899999633211           2346999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      ||++
T Consensus       111 di~~  114 (115)
T cd04593         111 NVLL  114 (115)
T ss_pred             Hhhc
Confidence            9986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=3.1e-11  Score=91.94  Aligned_cols=111  Identities=17%  Similarity=0.324  Sum_probs=88.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      ++++++++.++.+|++.|.++++..+||++++                      ++++|+++..|++..+.....     
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~----------------------~~~~Giv~~~~l~~~~~~~~~-----   54 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG----------------------GRLVGIFSERDIVRKVALRGA-----   54 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC----------------------CCEEEEEehHHHHHHHhhcCC-----
Confidence            46788999999999999999999999999864                      589999999999987764210     


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                             .....++.++|..   .  +.++.+++++.++++.|. .+.+++||..+   +++           +|+||+.
T Consensus        55 -------~~~~~~~~~~~~~---~--~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~---~~~-----------~Gvit~~  108 (113)
T cd04623          55 -------SALDTPVSEIMTR---N--VITVTPDDTVDEAMALMTERRFRHLPVVDG---GKL-----------VGIVSIG  108 (113)
T ss_pred             -------CccccCHHHhcCC---C--cEEECCCCcHHHHHHHHHHcCCCEeEEEeC---CEE-----------EEEEEHH
Confidence                   0012367888862   2  578999999999999998 68889999633   223           5999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      ||++|
T Consensus       109 di~~~  113 (113)
T cd04623         109 DVVKA  113 (113)
T ss_pred             HhhcC
Confidence            99875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=4.1e-11  Score=91.96  Aligned_cols=115  Identities=19%  Similarity=0.333  Sum_probs=87.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++|+.+|++.|.++++..+||+|..                      ++++|+++..|+++++......    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~----------------------~~~~Giv~~~dl~~~~~~~~~~----   55 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE----------------------GKYVGTISLTDILWKLKGLENL----   55 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCC----------------------CcEEEEEeHHHHHHHhhccCch----
Confidence            46789999999999999999999999999864                      5899999999999877642110    


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCeeEeecCCCCcccccceecccCCeeeEecHHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMD  198 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsD  198 (262)
                          +.......++.++|..   .  +.++.+++++.+|++.|.+ ...+||+ +++            ++.+|+||+.|
T Consensus        56 ----~~~~~~~~~v~~~~~~---~--~~~v~~~~~l~~a~~~~~~-~~~~~Vv-~~~------------~~~~Gvit~~d  112 (116)
T cd04643          56 ----DLERLVDLKVIDVMNT---D--VPVIIDDADIEEILHLLID-QPFLPVV-DDD------------GIFIGIITRRE  112 (116)
T ss_pred             ----hHHHHhCCcHHHHhcC---C--CceecCCCCHHHHHHHHhc-CCceeEE-eCC------------CeEEEEEEHHH
Confidence                1111124578888862   2  5789999999999999984 2458885 422            23469999999


Q ss_pred             HHHH
Q 046022          199 LLRF  202 (262)
Q Consensus       199 Iir~  202 (262)
                      ++++
T Consensus       113 il~~  116 (116)
T cd04643         113 ILKA  116 (116)
T ss_pred             hhcC
Confidence            9874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.31  E-value=2.5e-11  Score=93.33  Aligned_cols=110  Identities=19%  Similarity=0.304  Sum_probs=85.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCC-CceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANK-VVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS  117 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~-i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~  117 (262)
                      ++.++++++|+.+|++.|.+++ ...+||+|.+                      ++++|+++..|++......      
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~----------------------~~~~G~v~~~dl~~~~~~~------   53 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE----------------------GRYVGIISLADLRAIPTSQ------   53 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC----------------------CcEEEEEEHHHHHHHHHhh------
Confidence            4678999999999999998775 8899999864                      5899999999998866421      


Q ss_pred             CCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecH
Q 046022          118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQ  196 (262)
Q Consensus       118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITq  196 (262)
                               ....++.++|.. ...  +.++.+++++.+|++.|. .+.+++||+.+ +            +..+|+||.
T Consensus        54 ---------~~~~~v~~~~~~-~~~--~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~------------~~~~Gvl~~  108 (114)
T cd04801          54 ---------WAQTTVIQVMTP-AAK--LVTVLSEESLAEVLKLLEEQGLDELAVVED-S------------GQVIGLITE  108 (114)
T ss_pred             ---------ccccchhhhhcc-ccc--ceEECCCCcHHHHHHHHHHCCCCeeEEEcC-C------------CcEEEEEec
Confidence                     113467888862 112  468999999999999998 78999999633 2            234599999


Q ss_pred             HHHHH
Q 046022          197 MDLLR  201 (262)
Q Consensus       197 sDIir  201 (262)
                      .||++
T Consensus       109 ~di~~  113 (114)
T cd04801         109 ADLLR  113 (114)
T ss_pred             cceec
Confidence            99875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.30  E-value=9.1e-11  Score=113.07  Aligned_cols=129  Identities=18%  Similarity=0.200  Sum_probs=103.5

Q ss_pred             cchHHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeE
Q 046022           16 HAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHY   95 (262)
Q Consensus        16 ~~~~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~   95 (262)
                      ..-..|.+.+...+++++|..  +.+++++++|+.+|++.|.++++..+||+|.                       +++
T Consensus        76 ~~i~~qae~v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-----------------------gkl  130 (475)
T TIGR01303        76 LPIPAVKQTVAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE-----------------------DRP  130 (475)
T ss_pred             CCHHHHHHHHhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-----------------------CEE
Confidence            444566778889999999853  5679999999999999999999999999874                       489


Q ss_pred             EEEEeHHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCC
Q 046022           96 IGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDS  174 (262)
Q Consensus        96 vGivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~  174 (262)
                      +|+|+..|+.. .  +                ...+++++|+.   +  ++++.+++++.+|+++|. ++++++||+ ++
T Consensus       131 vGIVT~rDL~~-~--~----------------~~~~V~dIMt~---~--litv~~~~sL~eAl~lM~~~~i~~LPVV-D~  185 (475)
T TIGR01303       131 VGLVTDSDLLG-V--D----------------RFTQVRDIMST---D--LVTAPADTEPRKAFDLLEHAPRDVAPLV-DA  185 (475)
T ss_pred             EEEEEHHHhhc-C--C----------------CCCCHHHHccC---C--ceEeCCCCcHHHHHHHHHHcCCCEEEEE-cC
Confidence            99999999621 1  0                12479999972   3  688999999999999998 799999996 32


Q ss_pred             CCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022          175 RMENISGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       175 ~~~~~~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                      +            +.++|+||++||+++....
T Consensus       186 ~------------g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       186 D------------GTLAGILTRTGALRATIYT  205 (475)
T ss_pred             C------------CeEEEEEEHHHHHHHHhCC
Confidence            2            2345999999999977654

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=6.3e-11  Score=93.03  Aligned_cols=120  Identities=14%  Similarity=0.285  Sum_probs=84.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      .++++++++|+.+|++.|.++++.++||+|..                      ++++|+++..|+............  
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~----------------------~~~~Giv~~~dl~~~~~~~~~~~~--   57 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK----------------------GKLIGNISASDLKGLLLSPDDLLL--   57 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCC----------------------CcEEEEEEHHHhhhhhcCcchhhc--
Confidence            46789999999999999999999999999864                      589999999998886643211000  


Q ss_pred             CCcchHHhhhccccc---cccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEe
Q 046022          119 DAPDDLDKKMSAPVS---SIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQML  194 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~---~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giI  194 (262)
                      ....... .+...+.   +.|.   ..  +..+.+++++.+|+++|. ++.+++||+.+ .            ++.+|+|
T Consensus        58 ~~~~~~~-~~~~~~~~~~~~~~---~~--~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~------------~~~~Gii  118 (126)
T cd04642          58 YRTITFK-ELSEKFTDSDGVKS---RP--LITCTPSSTLKEVITKLVANKVHRVWVVDE-E------------GKPIGVI  118 (126)
T ss_pred             ccchhhh-hhhhhccccccccc---CC--CeEECCCCcHHHHHHHHHHhCCcEEEEECC-C------------CCEEEEE
Confidence            0000000 0000112   2333   12  578999999999999998 68999999633 2            2346999


Q ss_pred             cHHHHHH
Q 046022          195 TQMDLLR  201 (262)
Q Consensus       195 TqsDIir  201 (262)
                      |++||++
T Consensus       119 t~~dil~  125 (126)
T cd04642         119 TLTDIIS  125 (126)
T ss_pred             EHHHHhc
Confidence            9999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=2.4e-11  Score=93.00  Aligned_cols=112  Identities=22%  Similarity=0.280  Sum_probs=88.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      ++.++++++++.+|++.|.++++.++||++.+                      ++++|+++..|+++.+.+...     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~----------------------~~~~G~v~~~~l~~~~~~~~~-----   54 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN----------------------GNLVGFLSEQDCLKQLLESSY-----   54 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC----------------------CeEEEEeehHHHHHHhhhhhh-----
Confidence            45789999999999999999999999999864                      589999999999887764210     


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                            ......++.++|..   .  +..+.+++++.++++.|. ++.+++||+.+ +  .           .+|+||+.
T Consensus        55 ------~~~~~~~v~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~--~-----------~~Gvit~~  109 (114)
T cd04629          55 ------HCDGVATVRDIMTT---E--VLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-G--K-----------LVGQISRR  109 (114)
T ss_pred             ------ccCCCccHHHHhcc---C--ceEECCCCcHHHHHHHHHHhCCCccCEEEC-C--E-----------EEEEEEHH
Confidence                  01123468888862   2  577999999999999988 67888999633 1  2           35999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      ||+++
T Consensus       110 di~~~  114 (114)
T cd04629         110 DVLRA  114 (114)
T ss_pred             HHhcC
Confidence            99874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.29  E-value=8.5e-11  Score=90.18  Aligned_cols=108  Identities=19%  Similarity=0.192  Sum_probs=86.2

Q ss_pred             EEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCCC
Q 046022           40 IVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDD  119 (262)
Q Consensus        40 lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~~  119 (262)
                      .+++++++++.+|++.|.++++..+||++.+                      ++++|+++..|++..+.....      
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~----------------------~~~~G~v~~~dl~~~~~~~~~------   55 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDEN----------------------GRLLGTVTDGDIRRALLKGLS------   55 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCC----------------------CCEEEEEEcHHHHHHHhcCCC------
Confidence            3678999999999999999999999999864                      589999999999876654211      


Q ss_pred             CcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHH
Q 046022          120 APDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMD  198 (262)
Q Consensus       120 ~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsD  198 (262)
                              ...++.++|..   .  +.++.+++++.++++.|. .+.+++||+.++             ++.+|+||++|
T Consensus        56 --------~~~~v~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-------------~~~~Gvit~~d  109 (113)
T cd04607          56 --------LDDPVSEVMNR---N--PITAKVGSSREEILALMRERSIRHLPILDEE-------------GRVVGLATLDD  109 (113)
T ss_pred             --------cCCCHHHhhcC---C--CEEEcCCCCHHHHHHHHHHCCCCEEEEECCC-------------CCEEEEEEhHH
Confidence                    12467888862   2  578999999999999998 689999996322             23469999999


Q ss_pred             HHH
Q 046022          199 LLR  201 (262)
Q Consensus       199 Iir  201 (262)
                      |+.
T Consensus       110 i~~  112 (113)
T cd04607         110 LLS  112 (113)
T ss_pred             hcc
Confidence            863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.29  E-value=7e-11  Score=91.89  Aligned_cols=120  Identities=24%  Similarity=0.369  Sum_probs=89.3

Q ss_pred             CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022           38 RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS  117 (262)
Q Consensus        38 ~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~  117 (262)
                      ++++++++++++.+|++.|.++++..+||++..                      ++++|+++..|++.++.......  
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----------------------~~~~Giv~~~~l~~~~~~~~~~~--   57 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD----------------------RRLVGIVTQRDLLRHARPDGRRP--   57 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC----------------------CCEEEEEEHHHHHhhhcccccch--
Confidence            467899999999999999999999999999864                      58999999999987765321000  


Q ss_pred             CCCcchH-HhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEec
Q 046022          118 DDAPDDL-DKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLT  195 (262)
Q Consensus       118 ~~~~~~~-~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giIT  195 (262)
                       . .... ......++.++|..   .  +.++.+++++.++++.|. ++.+++||+.++             +..+|+||
T Consensus        58 -~-~~~~~~~~~~~~i~~~~~~---~--~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-------------g~~~Gvit  117 (124)
T cd04600          58 -L-RGRLRGRDKPETVGDIMSP---P--VVTVRPDTPIAELVPLLADGGHHHVPVVDED-------------RRLVGIVT  117 (124)
T ss_pred             -h-hhhhhcccccccHHHhccC---C--CeeeCCCCcHHHHHHHHHhcCCCceeEEcCC-------------CCEEEEEE
Confidence             0 0000 00113467888862   3  578999999999999998 689999996322             23469999


Q ss_pred             HHHHHH
Q 046022          196 QMDLLR  201 (262)
Q Consensus       196 qsDIir  201 (262)
                      +.|+++
T Consensus       118 ~~di~~  123 (124)
T cd04600         118 QTDLIA  123 (124)
T ss_pred             hHHhhc
Confidence            999975

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.29  E-value=1.2e-10  Score=112.88  Aligned_cols=167  Identities=17%  Similarity=0.235  Sum_probs=117.4

Q ss_pred             HHhhhcc-eeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEe
Q 046022           22 QRLLREA-KVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLT  100 (262)
Q Consensus        22 ~~~l~~~-~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs  100 (262)
                      ++.+... .++|+|.  ++++++++++|+.+|++.|.++++.++||++..                      ++++|+|+
T Consensus        80 ~~~I~~vk~~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~----------------------g~lvGiVt  135 (486)
T PRK05567         80 AEEVRKVKRSESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDEN----------------------GKLVGIIT  135 (486)
T ss_pred             HHHHHHhhhhhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC----------------------CEEEEEEE
Confidence            4444443 3788885  477899999999999999999999999999964                      68999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccc
Q 046022          101 MLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENI  179 (262)
Q Consensus       101 ~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~  179 (262)
                      ..|+.... .                 ...++.++|..  ++  ++++.+++++.++++.|. ++++.+||+ ++.    
T Consensus       136 ~~DL~~~~-~-----------------~~~~V~dim~~--~~--~v~v~~~~sl~eal~~m~~~~~~~lpVV-De~----  188 (486)
T PRK05567        136 NRDVRFET-D-----------------LSQPVSEVMTK--ER--LVTVPEGTTLEEALELLHEHRIEKLPVV-DDN----  188 (486)
T ss_pred             HHHhhhcc-c-----------------CCCcHHHHcCC--CC--CEEECCCCCHHHHHHHHHHcCCCEEEEE-cCC----
Confidence            99975321 0                 12368889862  23  688999999999999998 789999995 432    


Q ss_pred             ccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          180 SGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       180 ~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                              +...|+||.+||++++... ...    ...-+.|.+  ...+.+++  ...++++.|.+.++..+ |+|.
T Consensus       189 --------g~lvGiIT~~DLl~~~~~p-~a~----~d~~g~l~V--~aai~~~~--~~~e~a~~L~~agvdvi-vvD~  248 (486)
T PRK05567        189 --------GRLKGLITVKDIEKAEEFP-NAC----KDEQGRLRV--GAAVGVGA--DNEERAEALVEAGVDVL-VVDT  248 (486)
T ss_pred             --------CcEEEEEEhHHhhhhhhCC-Ccc----cccCCCEEE--EeecccCc--chHHHHHHHHHhCCCEE-EEEC
Confidence                    2345999999999986321 100    000111101  12333333  23888899999998855 5554

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=6.4e-11  Score=92.24  Aligned_cols=123  Identities=26%  Similarity=0.407  Sum_probs=90.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++++.+|++.|.+++...+||++.+.                     ++++|+|+..|+..++.....+....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~---------------------~~~~G~v~~~dl~~~~~~~~~~~~~~   60 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGT---------------------GKLVGIITATDILKYLGGGEKFNKIK   60 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCC---------------------CEEEEEEEHHHHHHHhhccchhcccc
Confidence            467889999999999999999999999998641                     58999999999998776422110000


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                      ..  ........++.++|..   .  +.++.+++++.++++.|. .+.+.+||. ++.            +..+|+||..
T Consensus        61 ~~--~~~~~~~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~-~~~------------~~~~Gvit~~  120 (125)
T cd04631          61 TG--NGLEAINEPVRSIMTR---N--VITITPDDSIKDAAELMLEKRVGGLPVV-DDD------------GKLVGIVTER  120 (125)
T ss_pred             cc--ccchhhhcCHHHHhcC---C--ceEeCCCCcHHHHHHHHHHcCCceEEEE-cCC------------CcEEEEEEHH
Confidence            00  0011234578888862   3  578999999999999998 688899995 321            2345999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      ||++|
T Consensus       121 di~~~  125 (125)
T cd04631         121 DLLKA  125 (125)
T ss_pred             HhhcC
Confidence            99875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.28  E-value=1.1e-10  Score=114.35  Aligned_cols=193  Identities=17%  Similarity=0.245  Sum_probs=126.5

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      .+|+|+|.  ++++++++++++.+|++.|.++++..+||+|.+                      ++++|+|+..|+...
T Consensus        68 ~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----------------------g~l~Givt~~di~~~  123 (546)
T PRK14869         68 PQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE----------------------GKLLGLVSLSDLARA  123 (546)
T ss_pred             CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC----------------------CEEEEEEEHHHHHHH
Confidence            68999995  477899999999999999999999999999965                      689999999999987


Q ss_pred             HhCCCC---CCCCCCCcchHHhhh------------------------ccccccccccCCCCCeeEEeCCCCCHHHHHHH
Q 046022          108 IAGDDQ---MNGSDDAPDDLDKKM------------------------SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEV  160 (262)
Q Consensus       108 l~~~~~---l~~~~~~~~~~~~~~------------------------~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~  160 (262)
                      +.....   +....-...++.+.+                        ...+.+.|.   ++. ++.+.....+..  ..
T Consensus       124 ~~~~~~~~~~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~---~~~-lvi~gdr~d~~~--~a  197 (546)
T PRK14869        124 YMDILDPEILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIE---EGD-IVIVGDREDIQL--AA  197 (546)
T ss_pred             HHhhcchhhhhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhcc---CCC-EEEEcCcHHHHH--HH
Confidence            775221   100000000000000                        011222232   122 444544433322  23


Q ss_pred             HhcCCCeeEeecCCCCc-ccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcccC-cCeEEEeCCCcHH
Q 046022          161 FSKGIHRALVPMDSRME-NISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALN-ENVFAITESTKVI  238 (262)
Q Consensus       161 m~~g~~rv~V~~~~~~~-~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~~-~~v~tv~~~~~~~  238 (262)
                      +.+|+..++|..+.... .+.  ++.+......|.|+.|..+....-.      ...++++  +|+ ++++++++++++.
T Consensus       198 i~~~~~~lIlt~g~~~~~~v~--~la~~~~i~ii~t~~dt~~t~~~l~------~~~~V~~--iM~~~~~~~~~~~~~~~  267 (546)
T PRK14869        198 IEAGVRLLIITGGAPVSEDVL--ELAKENGVTVISTPYDTFTTARLIN------QSIPVSY--IMTTEDLVTFSKDDYLE  267 (546)
T ss_pred             HHcCCCEEEECCCCCCCHHHH--HHHHhCCCeEEEecccHHHHHHHhh------cCCCHHH--hccCCCcEEECCCCcHH
Confidence            44788888774221110 000  1112334568999999887654422      1356777  498 8999999999999


Q ss_pred             HHHHHHHhCCCcEEEEEcCCCC
Q 046022          239 DAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       239 ~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +|.+.|.+++++.+||||++|.
T Consensus       268 ~~~~~m~~~~~~~~PVvd~~g~  289 (546)
T PRK14869        268 DVKEVMLKSRYRSYPVVDEDGK  289 (546)
T ss_pred             HHHHHHHhcCCCceEEEcCCCC
Confidence            9999999999999999998874

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=5.3e-11  Score=89.78  Aligned_cols=93  Identities=19%  Similarity=0.301  Sum_probs=77.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++.+++++.+|++.|.++++..+||+|++                      ++++|+++..|+....          
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~----------------------~~~~Giv~~~dl~~~~----------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD----------------------GKLSGIITERDLIAKS----------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC----------------------CCEEEEEEHHHHhcCC----------
Confidence            46789999999999999999999999999864                      5899999999976410          


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                                             .  ++++.+++++.++++.|. ++.+++||. +++            +...|+||++
T Consensus        50 -----------------------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv-~~~------------~~~~Giit~~   91 (96)
T cd04614          50 -----------------------E--VVTATKRTTVSECAQKMKRNRIEQIPII-NGN------------DKLIGLLRDH   91 (96)
T ss_pred             -----------------------C--cEEecCCCCHHHHHHHHHHhCCCeeeEE-CCC------------CcEEEEEEHH
Confidence                                   0  367899999999999997 799999995 432            2345999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      ||++
T Consensus        92 di~~   95 (96)
T cd04614          92 DLLK   95 (96)
T ss_pred             Hhhc
Confidence            9986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=4.7e-11  Score=94.52  Aligned_cols=123  Identities=20%  Similarity=0.319  Sum_probs=90.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCC--
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNG--  116 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~--  116 (262)
                      +++++++++++.+|++.|.++++.++||+|++                      ++++|+++..|+++++........  
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~----------------------~~~~G~i~~~~l~~~~~~~~~~~~~~   59 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE----------------------GRVVGIVSEGDLIRKIYKGKGLFYVT   59 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCC----------------------CCEEEEEeHHHHHHHHhccCCccccc
Confidence            45789999999999999999999999999864                      589999999999987764211000  


Q ss_pred             --CC---CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCe
Q 046022          117 --SD---DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASS  190 (262)
Q Consensus       117 --~~---~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~  190 (262)
                        ..   .......+....++.++|..   +  +..+.+++++.+++++|. .+.+++||. ++  ++           .
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~v~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~-~~--~~-----------~  120 (132)
T cd04636          60 LLYSVIFLDESKIKKLLGKKVEEIMTK---K--VITVDEDTTIEDVARIMSKKNIKRLPVV-DD--GK-----------L  120 (132)
T ss_pred             ccccccccchHHHHHHcCCCHHHhccC---C--ceEECCCCcHHHHHHHHHHCCCCeeEEE-EC--CE-----------E
Confidence              00   00001111123478888862   3  578999999999999998 688899995 32  12           3


Q ss_pred             eeEecHHHHHHH
Q 046022          191 YQMLTQMDLLRF  202 (262)
Q Consensus       191 ~giITqsDIir~  202 (262)
                      +|++|+.|+++|
T Consensus       121 iGvit~~dl~~~  132 (132)
T cd04636         121 VGIISRGDIIRS  132 (132)
T ss_pred             EEEEEHHHhhcC
Confidence            599999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=6.7e-11  Score=90.20  Aligned_cols=109  Identities=20%  Similarity=0.313  Sum_probs=87.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +.+++.+++|+.+|++.|.+++...+||++.+                      ++++|+++..|+.+++....      
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~----------------------~~~~G~v~~~~l~~~~~~~~------   53 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGD----------------------GHLVGLLTRDDLIRALAEGG------   53 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCC----------------------CcEEEEeeHHHHHHHHHhcC------
Confidence            35678999999999999999999999999864                      58999999999988776421      


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                               ...++.++|..   +  +.++.+++++.++++.|. .+.+++||+ +++            ++.+|+||+.
T Consensus        54 ---------~~~~v~~~~~~---~--~~~i~~~~~~~~~~~~~~~~~~~~~~Vv-~~~------------~~~~G~it~~  106 (111)
T cd04639          54 ---------PDAPVRGVMRR---D--FPTVSPSATLDAVLRLMQQGGAPAVPVV-DGS------------GRLVGLVTLE  106 (111)
T ss_pred             ---------CCCcHHHHhcC---C--CcEECCCCcHHHHHHHHHhcCCceeeEE-cCC------------CCEEEEEEHH
Confidence                     12368888862   3  578999999999999998 578899995 432            2346999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      |+.+|
T Consensus       107 dl~~~  111 (111)
T cd04639         107 NVGEL  111 (111)
T ss_pred             HhhcC
Confidence            99764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.26  E-value=1e-10  Score=89.33  Aligned_cols=109  Identities=24%  Similarity=0.326  Sum_probs=86.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +.+++++++++.+|++.|.+++...+||+++                       ++++|+++..|++..+.....     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~v~~~~l~~~~~~~~~-----   53 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-----------------------DPRLGIVTRTDLLDAVLLDGL-----   53 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-----------------------CeEEEEEEHHHHHHHHHcCCC-----
Confidence            3568899999999999999999999999985                       379999999999886653211     


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                              ....++.++|..   +  +..+.+++++.++++.|. .+.+++||..+ +  +           .+|+||+.
T Consensus        54 --------~~~~~i~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~--~-----------~~G~it~~  106 (111)
T cd04589          54 --------PSSTPVGEIATF---P--LITVDPDDFLFNALLLMTRHRIHRVVVREG-G--E-----------VVGVLEQT  106 (111)
T ss_pred             --------CCCCCHHHHhCC---C--cEEECCCCcHHHHHHHHHHhCccEEEEeeC-C--E-----------EEEEEEhH
Confidence                    113467888862   3  578999999999999998 68889999532 1  2           35999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      |+++|
T Consensus       107 dl~~~  111 (111)
T cd04589         107 DLLSF  111 (111)
T ss_pred             HhhcC
Confidence            99986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=1.1e-10  Score=93.67  Aligned_cols=122  Identities=21%  Similarity=0.245  Sum_probs=88.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCC--C
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMN--G  116 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~--~  116 (262)
                      +++++++++++.+|++.|.++++..+||+|+.                      ++++|+++..|+++++.......  +
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~----------------------~~~~Giv~~~dl~~~~~~~~~~~~~~   59 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN----------------------GKPVGVITYRDLAFAEFEDNERGLPK   59 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCC----------------------CCEEEEEeHHHHHHHhhcccccccch
Confidence            35688999999999999999999999999864                      68999999999998775321000  0


Q ss_pred             CCCC-------cc-hHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceeccc
Q 046022          117 SDDA-------PD-DLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVES  187 (262)
Q Consensus       117 ~~~~-------~~-~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~  187 (262)
                      ....       .. ........+++++|..   .  +..+.+++++.++++.|. ++.+++||..+ +  +         
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~--~---------  122 (135)
T cd04621          60 KSIKMKRKAGQKRYRYVKEVPLVAEDIMTE---E--IITVSPNDDVVDAAKLMLEANISGLPVVDN-D--N---------  122 (135)
T ss_pred             hhhhhhhhcccccccccccccccHHHhcCC---C--CeEECCCCCHHHHHHHHHHcCCCEEEEEeC-C--E---------
Confidence            0000       00 0001124578899862   2  578999999999999997 68889999633 1  2         


Q ss_pred             CCeeeEecHHHHHH
Q 046022          188 ASSYQMLTQMDLLR  201 (262)
Q Consensus       188 ~~~~giITqsDIir  201 (262)
                        .+|+||++||++
T Consensus       123 --~~Gvit~~di~~  134 (135)
T cd04621         123 --IVGVITKTDICR  134 (135)
T ss_pred             --EEEEEEHHHHhh
Confidence              359999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11573 hypothetical protein; Provisional

Probab=99.24  E-value=2.7e-10  Score=108.28  Aligned_cols=164  Identities=13%  Similarity=0.182  Sum_probs=119.3

Q ss_pred             hhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHH
Q 046022           25 LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDI  104 (262)
Q Consensus        25 l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Di  104 (262)
                      |.+.+|+|+|+...++++++.++++.++++.+.+++.+++||++.+                     .+.++|++...|+
T Consensus       184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~---------------------~D~IiGiv~~kDl  242 (413)
T PRK11573        184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS---------------------LDDAISMLRVREA  242 (413)
T ss_pred             cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC---------------------CCceEEEEEHHHH
Confidence            4778999999999999999999999999999999999999999754                     2589999999999


Q ss_pred             HHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccce
Q 046022          105 LAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVE  183 (262)
Q Consensus       105 l~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~  183 (262)
                      +.+.......        ..     ..+.+++.    .  +..|.++.++.++++.|. ++.|-..| .|+-        
T Consensus       243 l~~~~~~~~~--------~~-----~~l~~~~r----~--~~~Vpe~~~l~~lL~~~~~~~~~~AiV-vDEy--------  294 (413)
T PRK11573        243 YRLMTEKKEF--------TK-----ENMLRAAD----E--IYFVPEGTPLSTQLVKFQRNKKKVGLV-VDEY--------  294 (413)
T ss_pred             HHHhhccCcC--------CH-----HHHHhhcc----C--CeEeCCCCcHHHHHHHHHhcCCeEEEE-EecC--------
Confidence            9765431111        00     12334443    2  477999999999999999 45555555 4432        


Q ss_pred             ecccCCeeeEecHHHHHHHHHhhc-ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHH
Q 046022          184 LVESASSYQMLTQMDLLRFMMNHA-SELKDITSHSIRELGALNENVFAITESTKVIDAIKCM  244 (262)
Q Consensus       184 ~~~~~~~~giITqsDIir~L~~~~-~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM  244 (262)
                          |...||||.+||+.-+...+ ++..+-....+..   .+...+.|+...++.+..+.+
T Consensus       295 ----G~~~GiVTleDilEeivGei~de~d~~~~~~i~~---~~~~~~~v~G~~~l~d~~~~l  349 (413)
T PRK11573        295 ----GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTP---QNDGSVIIDGTANVREINKAF  349 (413)
T ss_pred             ----CCeEEEeeHHHHHHHHhCCCCcccCcccccceEE---ecCCEEEEEeeeEHHHHHHHh
Confidence                23459999999999988765 2222111112222   234568889999998888877

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1.7e-10  Score=90.09  Aligned_cols=118  Identities=17%  Similarity=0.232  Sum_probs=83.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      ++.++++++++.+|++.|.++++.++||+|.+.                     ++++|+++..|+++++......    
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~---------------------~~~~Giv~~~dl~~~~~~~~~~----   56 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEES---------------------GEVIGILSQRRLVEFLWENARS----   56 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCC---------------------CcEEEEEEHHHHHHHHHHhHHh----
Confidence            467899999999999999999999999998641                     4799999999998876431100    


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                      ....+........+.++|..   +  +.++.+++++.+|++.|. ++.+++||+ +++            ++++|+||++
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~~------------~~~vGiit~~  118 (123)
T cd04627          57 FPGLDPLYPIPLRDLTIGTS---D--VISINGDQPLIDALHLMHNEGISSVAVV-DNQ------------GNLIGNISVT  118 (123)
T ss_pred             ccchhhhhhhhhhhcccCcC---C--ceEeCCCCCHHHHHHHHHHcCCceEEEE-CCC------------CcEEEEEeHH
Confidence            00000000011123345542   3  578999999999999998 789999996 432            2346999999


Q ss_pred             HH
Q 046022          198 DL  199 (262)
Q Consensus       198 DI  199 (262)
                      ||
T Consensus       119 di  120 (123)
T cd04627         119 DV  120 (123)
T ss_pred             Hh
Confidence            97

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.24  E-value=7.8e-11  Score=93.60  Aligned_cols=124  Identities=17%  Similarity=0.270  Sum_probs=89.6

Q ss_pred             CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCC----
Q 046022           38 RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQ----  113 (262)
Q Consensus        38 ~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~----  113 (262)
                      +++.++++++++.+|++.|.++++.++||++++                      ++++|+++..|+++.+.....    
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~----------------------~~~~Gvi~~~dl~~~~~~~~~~~~~   59 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDD----------------------GRLVGIVSEGDLLRRAELGTERRRA   59 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC----------------------CCEEEEeeHHHHHHHhcccCcchhh
Confidence            467889999999999999999999999999864                      589999999999876553210    


Q ss_pred             -CCCCCCCcch----HHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceeccc
Q 046022          114 -MNGSDDAPDD----LDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVES  187 (262)
Q Consensus       114 -l~~~~~~~~~----~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~  187 (262)
                       +.........    .......++.++|..   .  +..+.+++++.++++.|. .+.+++||+ +. +           
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~l~Vv-d~-g-----------  121 (135)
T cd04586          60 RWLDLLAGAEELAAAFVRSHGRKVADVMTR---P--VVTVGEDTPLAEVAELMEEHRIKRVPVV-RG-G-----------  121 (135)
T ss_pred             hHHHHhcchHHHHHHHHHhcCCCHHHHhCC---C--ceEeCCCCcHHHHHHHHHHcCCCccCEe-cC-C-----------
Confidence             0000000000    001123468888852   2  578999999999999998 789999995 42 1           


Q ss_pred             CCeeeEecHHHHHHH
Q 046022          188 ASSYQMLTQMDLLRF  202 (262)
Q Consensus       188 ~~~~giITqsDIir~  202 (262)
                       ..+|+||+.|++++
T Consensus       122 -~~~Gvit~~di~~~  135 (135)
T cd04586         122 -RLVGIVSRADLLRA  135 (135)
T ss_pred             -EEEEEEEhHhhhcC
Confidence             23599999999863

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.24  E-value=1.2e-10  Score=88.75  Aligned_cols=112  Identities=18%  Similarity=0.263  Sum_probs=87.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      ++.++++++++.+|++.|.++++..+||++.+                      ++++|+++..|+.+++......    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------~~~~G~v~~~~l~~~~~~~~~~----   55 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD----------------------GRLVGIVSLDDIREILFDPSLY----   55 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCC----------------------CCEEEEEEHHHHHHHHhccccc----
Confidence            56789999999999999999999999999864                      5899999999998766432110    


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                               -..++.++|..   .  +.++.+++++.++++.|. .+.+++||+.++.            +..+|++|+.
T Consensus        56 ---------~~~~v~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~------------~~~~Gvvt~~  109 (114)
T cd04613          56 ---------DLVVASDIMTK---P--PVVVYPEDSLEDALKKFEDSDYEQLPVVDDDP------------GKLLGILSRS  109 (114)
T ss_pred             ---------ccEEHHHhccC---C--CcEEcCCCCHHHHHHHHhhCCccEeeEEeCCC------------CEEEEEEEhH
Confidence                     02468888862   2  578999999999999998 6888999963311            1235999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      |++.+
T Consensus       110 di~~~  114 (114)
T cd04613         110 DLLSA  114 (114)
T ss_pred             HhhcC
Confidence            99763

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1.3e-10  Score=90.13  Aligned_cols=120  Identities=23%  Similarity=0.413  Sum_probs=89.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++.+++|+.+|++.|.++++..+||++.+                      ++++|+++..|+++++........ .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----------------------~~~~G~v~~~~l~~~~~~~~~~~~-~   58 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED----------------------GKLVGLLTQRDLLRAALSSLSDNG-E   58 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCC----------------------CCEEEEEEHHHHHHHhcccccccc-c
Confidence            45689999999999999999999999999864                      589999999999887653211000 0


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                         .........++.++|..   +  +..+.+++++.+++++|. .+.+.+||+ ++.            +..+|+||..
T Consensus        59 ---~~~~~~~~~~v~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~Vv-~~~------------~~~~Gvit~~  117 (122)
T cd04803          59 ---ESLTKERDVPVAEVMKT---D--VLTVTPDTPLREAAEIMVENKIGCLPVV-DDK------------GTLVGIITRS  117 (122)
T ss_pred             ---cccccccCcCHHHhhCC---C--CeEeCCCCcHHHHHHHHHHcCCCeEEEE-cCC------------CCEEEEEEHH
Confidence               00001123467888862   3  578999999999999998 688899995 322            2346999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      |+++|
T Consensus       118 dl~~~  122 (122)
T cd04803         118 DFLRL  122 (122)
T ss_pred             HhhcC
Confidence            99875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.24  E-value=1.7e-10  Score=87.20  Aligned_cols=104  Identities=11%  Similarity=0.065  Sum_probs=82.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      ++.++++++++.+|++.|.+++...+||++++                      ++++|+++..|+++...         
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~----------------------g~~~Giv~~~dl~~~~~---------   50 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD----------------------GQPLGFVTRREAARASG---------   50 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC----------------------CCEEEEEeHHHHHHhcc---------
Confidence            45688999999999999999999999999864                      68999999999875321         


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                                 .++.++|..   .  +..+.+++++.++++.|. ++...+||+ ++.            +..+|+||+.
T Consensus        51 -----------~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~Vv-~~~------------~~~~Gvi~~~  101 (106)
T cd04582          51 -----------GCCGDHAEP---F--KVTVSVDDDLRIVLSRMFAHDMSWLPCV-DED------------GRYVGEVTQR  101 (106)
T ss_pred             -----------cchhhhccc---C--CEEECCCCCHHHHHHHHHHCCCCeeeEE-CCC------------CcEEEEEEHH
Confidence                       136677752   2  467899999999999888 788889996 322            2346999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      |+++|
T Consensus       102 ~l~~~  106 (106)
T cd04582         102 SIADY  106 (106)
T ss_pred             HhhcC
Confidence            99874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.24  E-value=8.9e-11  Score=112.39  Aligned_cols=126  Identities=18%  Similarity=0.320  Sum_probs=98.7

Q ss_pred             HHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEe
Q 046022           21 NQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLT  100 (262)
Q Consensus        21 ~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs  100 (262)
                      ..++|..++++++|.  ++++++++++|+.+|++.|.++++.++||+|.+                      ++++|+|+
T Consensus       328 ~~~~l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~----------------------~~~~Givt  383 (454)
T TIGR01137       328 VFDVLKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTEA----------------------GKVLGSVT  383 (454)
T ss_pred             HHHHhccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC----------------------CeEEEEEE
Confidence            345689999999994  468899999999999999999999999999864                      58999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCeeEeecCCCCcccc
Q 046022          101 MLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENIS  180 (262)
Q Consensus       101 ~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv~V~~~~~~~~~~  180 (262)
                      ..|+++.+.....             ....++.++|..   .  +.++.+++++.+++..|.+.  +.+|+.++      
T Consensus       384 ~~dl~~~~~~~~~-------------~~~~~v~~im~~---~--~~~v~~~~~l~~a~~~~~~~--~~~vV~~~------  437 (454)
T TIGR01137       384 LRELLSALFAGKA-------------NPDDAVSKVMSK---K--FIQIGEGEKLSDLSKFLEKN--SSAIVTEE------  437 (454)
T ss_pred             HHHHHHHHhccCC-------------CcCCCHHHhcCC---C--CeEECCcCcHHHHHHHHHHC--CeeEEEEC------
Confidence            9999987764211             112368899862   3  57899999999999999852  33443332      


Q ss_pred             cceecccCCeeeEecHHHHHHHH
Q 046022          181 GVELVESASSYQMLTQMDLLRFM  203 (262)
Q Consensus       181 g~~~~~~~~~~giITqsDIir~L  203 (262)
                             ++.+|+||++||+++|
T Consensus       438 -------g~liGvvt~~dll~~l  453 (454)
T TIGR01137       438 -------GKPIGVVTKIDLLSFL  453 (454)
T ss_pred             -------CEEEEEEEHHHHHHhh
Confidence                   2335999999999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1.2e-10  Score=88.99  Aligned_cols=108  Identities=17%  Similarity=0.256  Sum_probs=86.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      ++.++++++++.+|++.|.++++..+||+++.                      ++++|+++..|+..+.....      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~----------------------~~~~G~v~~~dl~~~~~~~~------   53 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE----------------------EKLKGVVTFTDILDLDLFES------   53 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCC----------------------CCEEEEEehHHhHHHHhhcc------
Confidence            46789999999999999999999999999864                      58999999999987654210      


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                              ....++.++|..   .  +.++.+++++.++++.|. ++.+++||+.+ +  .           .+|+||..
T Consensus        54 --------~~~~~v~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~--~-----------~~G~it~~  106 (111)
T cd04626          54 --------FLEKKVFNIVSQ---D--VFYVNEEDTIDEALDIMREKQIGRLPVVDD-N--K-----------LIGVVRTK  106 (111)
T ss_pred             --------cccCcHHHHhcC---C--cEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-C--E-----------EEEEEEhH
Confidence                    113467888862   2  578999999999999998 68999999633 1  2           35999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      ||++
T Consensus       107 di~~  110 (111)
T cd04626         107 DILD  110 (111)
T ss_pred             Hhcc
Confidence            9874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.23  E-value=2.1e-10  Score=87.42  Aligned_cols=108  Identities=19%  Similarity=0.274  Sum_probs=85.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++++.+|++.|.++++..+||++.+.                     ++++|+++..|++........     
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~---------------------~~~~G~v~~~~l~~~~~~~~~-----   55 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDL---------------------DNIIGVVHVKDLLRALAEGEE-----   55 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCC---------------------ceEEEEEEHHHHHHHHHcCCC-----
Confidence            467899999999999999999999999998641                     589999999999887653210     


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                                ..++.+++.    .  +.++.+++++.++++.|. .+.+++||+ ++.            +..+|+||++
T Consensus        56 ----------~~~~~~~~~----~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~------------~~~~Gvit~~  106 (111)
T cd04590          56 ----------DLDLRDLLR----P--PLFVPESTPLDDLLEEMRKERSHMAIVV-DEY------------GGTAGLVTLE  106 (111)
T ss_pred             ----------cCCHHHHhc----C--CeecCCCCcHHHHHHHHHhcCCcEEEEE-ECC------------CCEEEEeEHH
Confidence                      034566553    2  467999999999999998 689999995 322            2346999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      |+++
T Consensus       107 di~~  110 (111)
T cd04590         107 DILE  110 (111)
T ss_pred             Hhhc
Confidence            9975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=3.2e-10  Score=86.57  Aligned_cols=109  Identities=25%  Similarity=0.401  Sum_probs=87.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      ++.++++++++.+|++.|.++++..+||++.+                      ++++|+++..|+++++....      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~----------------------~~~~G~v~~~~l~~~~~~~~------   53 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD----------------------ERPIGIVTERDIVRAVAAGI------   53 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC----------------------CCEEEEeeHHHHHHHHhccC------
Confidence            45688999999999999999999999999864                      58999999999988776421      


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                              ....++.++|..   +  +.++.+++++.++++.|. ++...+||+ ++.            +...|+||.+
T Consensus        54 --------~~~~~v~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~Vv-~~~------------g~~~Gilt~~  107 (112)
T cd04624          54 --------DLDTPVSEIMTR---D--LVTVDPDEPVAEAAKLMRKNNIRHHLVV-DKG------------GELVGVISIR  107 (112)
T ss_pred             --------CCccCHHHhccC---C--CEEECCCCcHHHHHHHHHHcCccEEEEE-cCC------------CcEEEEEEHH
Confidence                    123467788862   3  578999999999999998 678889985 322            2335999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      |+++
T Consensus       108 dl~~  111 (112)
T cd04624         108 DLVR  111 (112)
T ss_pred             Hhcc
Confidence            9975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.22  E-value=3.8e-10  Score=85.85  Aligned_cols=107  Identities=21%  Similarity=0.342  Sum_probs=85.5

Q ss_pred             CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022           38 RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS  117 (262)
Q Consensus        38 ~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~  117 (262)
                      ++++++++++++.+|++.|.+++...+||++..                      ++++|+++..|+++.+....     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~----------------------~~~~G~v~~~~l~~~~~~~~-----   54 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED----------------------GRLVGIVTSWDISKAVARDK-----   54 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC----------------------CcEEEEEeHHHHHHHHhhCc-----
Confidence            356789999999999999999999999999864                      68999999999987655311     


Q ss_pred             CCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecH
Q 046022          118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQ  196 (262)
Q Consensus       118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITq  196 (262)
                                  .++.++|..   .  +.++.+++++.++++.|. .+.+.+||+ +.+            +...|+||+
T Consensus        55 ------------~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~------------~~~~G~v~~  104 (110)
T cd04605          55 ------------KSVEDIMTR---N--VITATPDEPIDVAARKMERHNISALPVV-DAE------------NRVIGIITS  104 (110)
T ss_pred             ------------cCHHHhcCC---C--CeEECCCCcHHHHHHHHHHhCCCEEeEE-CCC------------CcEEEEEEH
Confidence                        146777752   2  578999999999999988 688999995 322            234599999


Q ss_pred             HHHHH
Q 046022          197 MDLLR  201 (262)
Q Consensus       197 sDIir  201 (262)
                      .||++
T Consensus       105 ~di~~  109 (110)
T cd04605         105 EDISK  109 (110)
T ss_pred             HHhhh
Confidence            99965

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=1.9e-10  Score=87.77  Aligned_cols=110  Identities=16%  Similarity=0.246  Sum_probs=85.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      .+.++++++++.+|++.|.+++...+||.+.                       ++++|+++..|+..++.....     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~dl~~~~~~~~~-----   53 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER-----------------------GELVGLLTFREVLQAMAQHGA-----   53 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC-----------------------CEEEEEEEHHHHHHHHHhcCC-----
Confidence            4678999999999999999888877777653                       589999999999887753100     


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                             .....++.++|..   .  +.++.+++++.++++.|. .+..++||+ +++  +           .+|+||.+
T Consensus        54 -------~~~~~~v~~~~~~---~--~~~v~~~~~l~~a~~~m~~~~~~~l~Vv-~~~--~-----------~~Gvvt~~  107 (112)
T cd04625          54 -------GVLDTTVRAIMNP---E--PIVASPDDSIDEVRRLMVERHLRYLPVL-DGG--T-----------LLGVISFH  107 (112)
T ss_pred             -------chhcCCHHHHhCC---C--CeEECCCCCHHHHHHHHHHcCCCeeeEE-ECC--E-----------EEEEEEHH
Confidence                   0113468888862   2  478999999999999998 688999996 321  2           35999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      ||+++
T Consensus       108 dl~~~  112 (112)
T cd04625         108 DVAKA  112 (112)
T ss_pred             HhhcC
Confidence            99874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.21  E-value=2.8e-10  Score=86.71  Aligned_cols=107  Identities=21%  Similarity=0.307  Sum_probs=86.2

Q ss_pred             CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022           38 RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS  117 (262)
Q Consensus        38 ~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~  117 (262)
                      +++++++.+.++.+|.+.|.+++...+||++.                       ++++|+++..|+...+...      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~v~~~dl~~~~~~~------   52 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-----------------------GRVVGIISRRDVEKALRHG------   52 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-----------------------CEEEEEEEHHHHHHHHhcc------
Confidence            46789999999999999999999999999986                       3799999999988765321      


Q ss_pred             CCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecH
Q 046022          118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQ  196 (262)
Q Consensus       118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITq  196 (262)
                               ....++.++|..   .  +..+.+++++.+++++|. .+.+++||.. ++             ..+|+||+
T Consensus        53 ---------~~~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~-------------~~~Gvvt~  104 (110)
T cd04595          53 ---------LGHAPVKDYMST---D--VVTVPPDTPLSEVQELMVEHDIGRVPVVE-DG-------------RLVGIVTR  104 (110)
T ss_pred             ---------cccCcHHHHhcC---C--CEEECCCCcHHHHHHHHHHcCCCeeEEEe-CC-------------EEEEEEEh
Confidence                     123468888862   3  578999999999999998 6889999953 21             23599999


Q ss_pred             HHHHH
Q 046022          197 MDLLR  201 (262)
Q Consensus       197 sDIir  201 (262)
                      .|+++
T Consensus       105 ~di~~  109 (110)
T cd04595         105 TDLLR  109 (110)
T ss_pred             HHhhc
Confidence            99975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.20  E-value=4.2e-10  Score=85.61  Aligned_cols=107  Identities=20%  Similarity=0.379  Sum_probs=85.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++++.+|++.|.++++.++||++.                       ++++|+++..|+++......      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~~l~~~~~~~~------   52 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-----------------------GKLVGIVTLSDIAHAIARGL------   52 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-----------------------CEEEEEEEHHHHHHHHhccc------
Confidence            5678999999999999999999999999985                       38999999999988654311      


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                               ...++.++|..   .  +.++.+++++.++++.|. .+.+.+||. ++.            ++..|+||..
T Consensus        53 ---------~~~~v~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~V~-~~~------------~~~~G~i~~~  105 (110)
T cd04588          53 ---------ELAKVKDVMTK---D--VITIDEDEQLYDAIRLMNKHNVGRLIVT-DDE------------GRPVGIITRT  105 (110)
T ss_pred             ---------cccCHHHHhcC---C--ceEECCCCCHHHHHHHHHhcCCCEEEEE-CCC------------CCEEEEEEhH
Confidence                     01467788752   2  578999999999999998 688899995 322            2346999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      ||++
T Consensus       106 dl~~  109 (110)
T cd04588         106 DILR  109 (110)
T ss_pred             Hhhc
Confidence            9975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.20  E-value=4.4e-10  Score=85.11  Aligned_cols=105  Identities=16%  Similarity=0.291  Sum_probs=84.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      ++.++++++++.+|++.|.++++..+||++.+                      ++++|+++..|++.....        
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~----------------------~~~~G~v~~~dl~~~~~~--------   52 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD----------------------NKLLGIVSLESLEQAYKE--------   52 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC----------------------CcEEEEEEHHHHHHHhhc--------
Confidence            45688999999999999999999999999864                      589999999998775422        


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                                ..++.++|..   .  +..+.+++++.++++.|. .+.+++||+ +++            ++.+|+||++
T Consensus        53 ----------~~~v~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~vv-~~~------------g~~~Gvit~~  104 (109)
T cd04583          53 ----------AKSLEDIMLE---D--VFTVQPDASLRDVLGLVLKRGPKYVPVV-DED------------GKLVGLITRS  104 (109)
T ss_pred             ----------CCcHhHhhcC---C--ceEECCCCcHHHHHHHHHHcCCceeeEE-CCC------------CeEEEEEehH
Confidence                      1257778862   2  578999999999999998 588999996 322            2346999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      |+++
T Consensus       105 ~l~~  108 (109)
T cd04583         105 SLVD  108 (109)
T ss_pred             Hhhc
Confidence            9975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.20  E-value=7e-11  Score=113.39  Aligned_cols=156  Identities=12%  Similarity=0.165  Sum_probs=118.2

Q ss_pred             hcceeccccccCCcEEEEcCCCCHHHHHHHHHh-----CCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEe
Q 046022           26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALVA-----NKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLT  100 (262)
Q Consensus        26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~-----~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs  100 (262)
                      .+.+++++|.  +++++++++.|+.+|++.|.+     +++..+||+|++                      ++++|+++
T Consensus       129 ~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~----------------------~~l~GvV~  184 (449)
T TIGR00400       129 SDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES----------------------KHLKGVLS  184 (449)
T ss_pred             CcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC----------------------CeEEEEEE
Confidence            5578999995  578999999999999999985     567788988864                      68999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccc
Q 046022          101 MLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENI  179 (262)
Q Consensus       101 ~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~  179 (262)
                      .+|++..  .+                 ..+++++|..   .  +.++.+++++.+|++.|. ++...+||+ |+.    
T Consensus       185 l~dLl~a--~~-----------------~~~v~~im~~---~--~~~v~~~~~~~eal~~m~~~~~~~lpVV-D~~----  235 (449)
T TIGR00400       185 IRDLILA--KP-----------------EEILSSIMRS---S--VFSIVGVNDQEEVARLIQKYDFLAVPVV-DNE----  235 (449)
T ss_pred             HHHHhcC--CC-----------------CCcHHHHhCC---C--CeeECCCCCHHHHHHHHHHcCCCEEeEE-cCC----
Confidence            9998642  10                 1368999972   3  578999999999999998 678899996 432    


Q ss_pred             ccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEE
Q 046022          180 SGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPI  254 (262)
Q Consensus       180 ~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~V  254 (262)
                              ++.+|+||..|+++.+.+...          ++  +++...++..+++.+.+++..|.++++.-++|
T Consensus       236 --------g~lvGiIt~~Dil~~l~~~~~----------ed--~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v  290 (449)
T TIGR00400       236 --------GRLVGIVTVDDIIDVIQSEAT----------ED--FYMIAAVKPLDDSYFDTSILVMAKNRIIWLLV  290 (449)
T ss_pred             --------CeEEEEEEHHHHHHHHHhhhH----------HH--HHHhcCCCCCcchhhhchHHHHHHhccchHHH
Confidence                    234599999999999977532          22  23333444445677788888898888765443

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=2.1e-10  Score=90.21  Aligned_cols=114  Identities=20%  Similarity=0.333  Sum_probs=83.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH-----HhCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH-----IAGDDQ  113 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~-----l~~~~~  113 (262)
                      +.++++.++++.+|++.|.++++..+||++..                      ++++|+++..|+...     +.....
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~----------------------~~~~Giv~~~dl~~~~~~~~~~~~~~   59 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD----------------------DNFIGVITAVDLLGEEPIKRIQEGGI   59 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC----------------------CcEEEEEEHHHHhhChhhHHHHHcCC
Confidence            35689999999999999999999999999864                      589999999998852     221100


Q ss_pred             CCCCCCCcchHHhhhccccccccccCCCCCeeEEe----CCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccC
Q 046022          114 MNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTL----SPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESA  188 (262)
Q Consensus       114 l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v----~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~  188 (262)
                                  .....+++++|..   ......+    .+++++.++++.|. ++.+++||+.++ .           +
T Consensus        60 ------------~~~~~~v~~im~~---~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~-~-----------~  112 (126)
T cd04640          60 ------------SRSELTVADVMTP---KEDLKALDLEELENASVGDVVETLKASGRQHALVVDRE-H-----------H  112 (126)
T ss_pred             ------------CchheEHHHhcCc---hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECC-C-----------C
Confidence                        1123468889862   2111233    37899999999998 789999996332 1           1


Q ss_pred             CeeeEecHHHHHH
Q 046022          189 SSYQMLTQMDLLR  201 (262)
Q Consensus       189 ~~~giITqsDIir  201 (262)
                      .++|+||++||++
T Consensus       113 ~~~G~it~~di~~  125 (126)
T cd04640         113 QIRGIISTSDIAR  125 (126)
T ss_pred             EEEEEEeHHHHhh
Confidence            3459999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.19  E-value=4.1e-10  Score=85.81  Aligned_cols=108  Identities=19%  Similarity=0.344  Sum_probs=85.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      ++.+++.++++.+|.+.|.++++..+||++.                       ++++|+++..|+..++.....     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-----------------------~~~~G~v~~~~l~~~~~~~~~-----   53 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-----------------------GRLVGIVTDRDLRNRVVAEGL-----   53 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-----------------------CEEEEEEEhHHHHHHHhccCC-----
Confidence            5678999999999999999999999999985                       489999999999876654211     


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                              ....++.++|..   .  +..+.++++|.++++.|. .+.+++||..+ +             ..+|++|.+
T Consensus        54 --------~~~~~i~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-------------~~~Giit~~  106 (111)
T cd04800          54 --------DPDTPVSEVMTA---P--PITIPPDATVFEALLLMLERGIHHLPVVDD-G-------------RLVGVISAT  106 (111)
T ss_pred             --------CccCCHHHHhCC---C--CeEECCCCcHHHHHHHHHHcCCCeeeEeEC-C-------------EEEEEEEHH
Confidence                    012367788862   3  578999999999999998 68899999533 1             235999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      ||++
T Consensus       107 di~~  110 (111)
T cd04800         107 DLLR  110 (111)
T ss_pred             Hhhc
Confidence            9985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.18  E-value=1.1e-09  Score=106.21  Aligned_cols=127  Identities=16%  Similarity=0.165  Sum_probs=97.1

Q ss_pred             HHhhhcce-eccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEe
Q 046022           22 QRLLREAK-VRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLT  100 (262)
Q Consensus        22 ~~~l~~~~-v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs  100 (262)
                      .+.+...+ ..+.|..  +.+++++++|+.+|+++|.++++..+||++++.                   ..++++|+|+
T Consensus        89 ~~~v~kvk~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~-------------------~~gkLvGIVt  147 (495)
T PTZ00314         89 VEEVRKVKRFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGK-------------------VGGKLLGIVT  147 (495)
T ss_pred             HHHHhhcccccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCc-------------------cCCeEEEEEE
Confidence            44555544 6677753  557999999999999999999999999998631                   0168999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccc
Q 046022          101 MLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENI  179 (262)
Q Consensus       101 ~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~  179 (262)
                      ..|+. +. ..                ...+|+++|.. .++  ++++.+++++.+|+++|. ++++.+||+ +++    
T Consensus       148 ~~DL~-~~-~~----------------~~~~V~diMt~-~~~--lvtv~~~~sl~eAl~lm~e~~i~~LPVV-d~~----  201 (495)
T PTZ00314        148 SRDID-FV-KD----------------KSTPVSEVMTP-REK--LVVGNTPISLEEANEVLRESRKGKLPIV-NDN----  201 (495)
T ss_pred             HHHHh-hc-cc----------------CCCCHHHhhCC-cCC--ceEeCCCCCHHHHHHHHHHcCCCeEEEE-cCC----
Confidence            99975 21 11                13479999972 123  688999999999999998 799999996 432    


Q ss_pred             ccceecccCCeeeEecHHHHHHHH
Q 046022          180 SGVELVESASSYQMLTQMDLLRFM  203 (262)
Q Consensus       180 ~g~~~~~~~~~~giITqsDIir~L  203 (262)
                              +..+|+||++||++..
T Consensus       202 --------g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        202 --------GELVALVSRSDLKKNR  217 (495)
T ss_pred             --------CcEEEEEEehHhhhcc
Confidence                    2346999999999865

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.18  E-value=2.9e-10  Score=110.33  Aligned_cols=123  Identities=13%  Similarity=0.136  Sum_probs=93.3

Q ss_pred             eeccccccC-CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           29 KVRDLTAEK-RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        29 ~v~dlm~~~-~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      +|+++|... ....++++++|+.+|++.|.++++..+||+|...                   ..++++|+||..|+...
T Consensus        95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~-------------------~~gkLvGIVT~~DLr~~  155 (502)
T PRK07107         95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGT-------------------AHGKLLGIVTSRDYRIS  155 (502)
T ss_pred             HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCC-------------------cCCEEEEEEEcHHhhcc
Confidence            366666421 1225899999999999999999999999998520                   01699999999997421


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                       ..                ....+|+++|+.. +.  +.++.+++++.+|+++|. ++++++||+ +++           
T Consensus       156 -~~----------------~~~~~V~dIMt~~-~~--~itv~~d~~l~eAl~lM~e~~i~~LPVV-D~~-----------  203 (502)
T PRK07107        156 -RM----------------SLDTKVKDFMTPF-EK--LVTANEGTTLKEANDIIWDHKLNTLPIV-DKN-----------  203 (502)
T ss_pred             -cc----------------CCCCCHHHHhCCC-CC--eEEECCCCcHHHHHHHHHHcCCCEEEEE-cCC-----------
Confidence             10                1245799999731 23  688999999999999998 799999996 432           


Q ss_pred             cCCeeeEecHHHHHHHH
Q 046022          187 SASSYQMLTQMDLLRFM  203 (262)
Q Consensus       187 ~~~~~giITqsDIir~L  203 (262)
                       +.++|+||..||++..
T Consensus       204 -g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        204 -GNLVYLVFRKDYDSHK  219 (502)
T ss_pred             -CeEEEEEEhHHHHhcc
Confidence             2345999999999864

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.18  E-value=3.3e-10  Score=86.27  Aligned_cols=104  Identities=15%  Similarity=0.234  Sum_probs=84.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      ++.++++++++.+|++.|.+++...+||++.+                      ++++|+++..|+.....         
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~----------------------~~~~G~v~~~~l~~~~~---------   51 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEK----------------------NKVVGIVTSKDVAGKDP---------   51 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCC----------------------CeEEEEecHHHHhcccc---------
Confidence            46789999999999999999999999999864                      68999999999864210         


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                                ..+++++|..   .  +.++.+++++.++++.|. .+.+.+||+ ++.            +..+|+||..
T Consensus        52 ----------~~~v~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~------------~~~~G~it~~  103 (108)
T cd04596          52 ----------DTTIEKVMTK---N--PITVNPKTSVASVAHMMIWEGIEMLPVV-DDN------------KKLLGIISRQ  103 (108)
T ss_pred             ----------cccHHHHhcC---C--CeEECCCCCHHHHHHHHHHcCCCeeeEE-cCC------------CCEEEEEEHH
Confidence                      2368888862   2  578999999999999988 788999995 322            2345999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      |+++
T Consensus       104 di~~  107 (108)
T cd04596         104 DVLK  107 (108)
T ss_pred             Hhhc
Confidence            9986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=6.6e-10  Score=85.33  Aligned_cols=109  Identities=17%  Similarity=0.265  Sum_probs=82.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCC-CceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANK-VVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS  117 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~-i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~  117 (262)
                      +.++++++.|+.+|++.|.+++ ...+||.+.                       ++++|+++..|++..+......   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~dl~~~~~~~~~~---   55 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK-----------------------GRLLGIFTERDIVRLTAIGKDL---   55 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC-----------------------CcEEEEEeHHHHHHHHhcCCCc---
Confidence            3467899999999999999888 667777763                       5899999999998766532110   


Q ss_pred             CCCcchHHhhhccccccccccCCCCCeeEEeCCC--CCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEe
Q 046022          118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPN--TSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQML  194 (262)
Q Consensus       118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~--~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giI  194 (262)
                                ...++.++|..   .  +.++.++  +++.++++.|. ++.+++||+ ++.            +..+|+|
T Consensus        56 ----------~~~~i~~~~~~---~--~~~v~~~~~~~l~~a~~~~~~~~~~~~pVv-d~~------------~~~~Gvi  107 (115)
T cd04620          56 ----------SDLPIGEVMTQ---P--VVTLQESEIQDIFTALSLFRQHQIRHLPVL-DDQ------------GQLIGLV  107 (115)
T ss_pred             ----------cccCHHHhcCC---C--cEEEecccccCHHHHHHHHHHhCCceEEEE-cCC------------CCEEEEE
Confidence                      12367788862   2  4667776  79999999998 688999996 432            2345999


Q ss_pred             cHHHHHH
Q 046022          195 TQMDLLR  201 (262)
Q Consensus       195 TqsDIir  201 (262)
                      |++||+|
T Consensus       108 t~~dl~~  114 (115)
T cd04620         108 TAESIRQ  114 (115)
T ss_pred             EhHHhhc
Confidence            9999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=5.6e-10  Score=85.34  Aligned_cols=109  Identities=23%  Similarity=0.310  Sum_probs=85.8

Q ss_pred             EEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCCC
Q 046022           40 IVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDD  119 (262)
Q Consensus        40 lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~~  119 (262)
                      ..++.+++++.+|++.|.+++...+||++.+                      ++++|+++..|+.+.+.....      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~----------------------~~~~G~v~~~dl~~~~~~~~~------   54 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK----------------------KRLVGIITRYDVLSYALESEE------   54 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC----------------------CCEEEEEEHHHHHHhhhhhhh------
Confidence            4578999999999999999999999999864                      589999999999875543211      


Q ss_pred             CcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHH
Q 046022          120 APDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMD  198 (262)
Q Consensus       120 ~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsD  198 (262)
                             ....++.++|..   .  +.++.+++++.++++.|. .+.+++||+ ++.            ++.+|+||..|
T Consensus        55 -------~~~~~i~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-d~~------------g~~~Gvvt~~d  109 (113)
T cd04615          55 -------LKDAKVREVMNS---P--VITIDANDSIAKARWLMSNNNISRLPVL-DDK------------GKVGGIVTEDD  109 (113)
T ss_pred             -------hcCCcHHHhccC---C--ceEECCCCcHHHHHHHHHHcCCCeeeEE-CCC------------CeEEEEEEHHH
Confidence                   123467888862   2  578999999999999998 688899996 322            23459999999


Q ss_pred             HHH
Q 046022          199 LLR  201 (262)
Q Consensus       199 Iir  201 (262)
                      |++
T Consensus       110 l~~  112 (113)
T cd04615         110 ILR  112 (113)
T ss_pred             hhc
Confidence            975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=8.2e-10  Score=84.29  Aligned_cols=109  Identities=19%  Similarity=0.369  Sum_probs=86.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++++.+|++.|.+++...+||+++                       ++++|+++..|++.++......    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~dl~~~~~~~~~~----   54 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-----------------------EKPVGIITERDLVKKVVSRNLK----   54 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-----------------------CEEEEEEEHHHHHHHHhhccCC----
Confidence            5678999999999999999999999999984                       4899999999999877532100    


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                              ....++.++|..   .  +..+.+++++.++++.|. .+.+.+||+.+ +  ++           .|+||+.
T Consensus        55 --------~~~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~--~~-----------~Gvi~~~  107 (112)
T cd04802          55 --------PREVPVGEVMST---P--LITIDPNASLNEAAKLMAKHGIKRLPVVDD-D--EL-----------VGIVTTT  107 (112)
T ss_pred             --------cccCCHHHhcCC---C--cEEECCCCCHHHHHHHHHHcCCCeeEEeeC-C--EE-----------EEEEEhh
Confidence                    112367788852   3  577999999999999998 68889999632 2  23           4999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      ||++
T Consensus       108 di~~  111 (112)
T cd04802         108 DIVM  111 (112)
T ss_pred             hhhc
Confidence            9975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.16  E-value=4.6e-10  Score=84.98  Aligned_cols=109  Identities=23%  Similarity=0.401  Sum_probs=84.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++++.+|++.|.++++..+||++.                       ++++|+++..|+.+.+.....     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----------------------~~~~G~v~~~dl~~~~~~~~~-----   53 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-----------------------GRVVGSIDESDLLDALIEGKA-----   53 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-----------------------CeeEEEEeHHHHHHHHhcccc-----
Confidence            4678999999999999999999999999985                       379999999999987764211     


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCeeEeecCCCCcccccceecccCCeeeEecHHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMD  198 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsD  198 (262)
                              ....++.++|..   .  +.++.+++++.+++++|.+ .+.+||+ ++.            +...|+||++|
T Consensus        54 --------~~~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~-~~~~~vv-~~~------------~~~~Gvvt~~d  106 (110)
T cd04609          54 --------KFSLPVREVMGE---P--LPTVDPDAPIEELSELLDR-GNVAVVV-DEG------------GKFVGIITRAD  106 (110)
T ss_pred             --------ccCcCHHHHhcC---C--CceeCCCCcHHHHHHHHHh-CCceeEE-ecC------------CeEEEEEeHHH
Confidence                    012467788862   2  4779999999999999986 3446664 322            23459999999


Q ss_pred             HHHH
Q 046022          199 LLRF  202 (262)
Q Consensus       199 Iir~  202 (262)
                      |++|
T Consensus       107 i~~~  110 (110)
T cd04609         107 LLKY  110 (110)
T ss_pred             hhcC
Confidence            9986

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=5.3e-10  Score=86.62  Aligned_cols=119  Identities=18%  Similarity=0.308  Sum_probs=87.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++++.+|++.|.+++..++||++..                      ++++|+++..|++..........   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~----------------------~~~~G~v~~~~l~~~~~~~~~~~---   56 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA----------------------GELIGIITRRDIIRAGSVRTSVE---   56 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC----------------------CcEEEEEEcHHHHhhcccccccc---
Confidence            56789999999999999999999999999864                      68999999999887532110000   


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                       ...........++.++|..   .  +.++.+++++.++++.|. .+.+++||+.+ .            +..+|++|+.
T Consensus        57 -~~~~~~~~~~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~------------g~~~Gvit~~  117 (122)
T cd04635          57 -DQQRTQTKASPTVEKIMST---P--VYSVTPDDSIATAVELMLEHDIGRLPVVNE-K------------DQLVGIVDRH  117 (122)
T ss_pred             -chhhhhhhccCcHHHHhcC---C--CeeECCCCCHHHHHHHHHHcCCCeeeEEcC-C------------CcEEEEEEhH
Confidence             0000001124467888852   2  578999999999999998 68999999633 2            2346999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      ||++
T Consensus       118 dl~~  121 (122)
T cd04635         118 DVLK  121 (122)
T ss_pred             Hhhc
Confidence            9986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.15  E-value=6.4e-10  Score=84.88  Aligned_cols=111  Identities=18%  Similarity=0.258  Sum_probs=87.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      ++.++++++++.++++.|.+.+...+||++.+                      ++++|+++..|+...+.....+    
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~----------------------~~~~G~v~~~~i~~~~~~~~~~----   56 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED----------------------GRLVGIFTDGDLRRALEKGLDI----   56 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCC----------------------CCEEEEechHHHHHHHhccCcc----
Confidence            34578999999999999998899999999864                      5899999999998877642211    


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                               ...++.++|..   .  +.++.+++++.++++.|. .+.+++||+ +++            +..+|+||..
T Consensus        57 ---------~~~~v~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~Vv-~~~------------~~~iG~it~~  109 (114)
T cd04604          57 ---------LTLPVADVMTR---N--PKTIDPDALAAEALELMEENKITALPVV-DDN------------GRPVGVLHIH  109 (114)
T ss_pred             ---------ccCCHHHhhcc---C--CeEECCCCcHHHHHHHHHHcCCCEEEEE-CCC------------CCEEEEEEHH
Confidence                     12368888862   2  467999999999999998 688999996 322            2345999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      ||+++
T Consensus       110 di~~~  114 (114)
T cd04604         110 DLLRA  114 (114)
T ss_pred             HhhcC
Confidence            99864

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.15  E-value=8.8e-10  Score=83.70  Aligned_cols=108  Identities=26%  Similarity=0.453  Sum_probs=85.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      ++.++++++++.+|++.|.+++...+||++.                       ++++|+++..|+.++......     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-----------------------~~~~G~v~~~~l~~~~~~~~~-----   53 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-----------------------GRPLGIVTERDILRLLASGPD-----   53 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-----------------------CEEEEEEeHHHHHHHHhcCCC-----
Confidence            4568899999999999999999999999975                       489999999999887754210     


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                               ...+++++|..   .  +.++.+++++.++++.|. .+.+.+||+ ++.            +...|+||++
T Consensus        54 ---------~~~~v~~~~~~---~--~~~~~~~~~l~~~l~~~~~~~~~~~~Vv-~~~------------~~~~Gvi~~~  106 (111)
T cd04611          54 ---------LQTPVGEVMSS---P--LLTVPADTSLYDARQLMREHGIRHLVVV-DDD------------GELLGLLSQT  106 (111)
T ss_pred             ---------CCcCHHHhcCC---C--ceEECCCCCHHHHHHHHHHcCCeEEEEE-CCC------------CcEEEEEEhH
Confidence                     23468888862   2  578999999999999998 688889995 322            2335999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      ||++
T Consensus       107 di~~  110 (111)
T cd04611         107 DLLQ  110 (111)
T ss_pred             Hhhc
Confidence            9975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.15  E-value=8.5e-10  Score=84.57  Aligned_cols=109  Identities=25%  Similarity=0.393  Sum_probs=88.8

Q ss_pred             CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022           38 RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS  117 (262)
Q Consensus        38 ~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~  117 (262)
                      +.++++.++.++.+|+..|.++++.++||.+.                       .+++|+++..|+++++......   
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-----------------------~~l~Giit~~di~~~~~~~~~~---   60 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD-----------------------GKLVGIITERDILRALAAGGKR---   60 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-----------------------CEEEEEEEHHHHHHHHhccCCc---
Confidence            57789999999999999999999999999874                       3799999999999998863211   


Q ss_pred             CCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhc--CCCeeEeecCCCCcccccceecccCCeeeEec
Q 046022          118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSK--GIHRALVPMDSRMENISGVELVESASSYQMLT  195 (262)
Q Consensus       118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~--g~~rv~V~~~~~~~~~~g~~~~~~~~~~giIT  195 (262)
                                 ..++.++|..   +  +.++.+++++.++++.|.+  +++++||..++.            ++.+|++|
T Consensus        61 -----------~~~v~~v~~~---~--~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~------------~~lvGivt  112 (117)
T COG0517          61 -----------LLPVKEVMTK---P--VVTVDPDTPLEEALELMVERHKIRRLPVVDDDG------------GKLVGIIT  112 (117)
T ss_pred             -----------cccHHHhccC---C--cEEECCCCCHHHHHHHHHHHcCcCeEEEEECCC------------CeEEEEEE
Confidence                       0168889973   2  6889999999999999984  799999964321            13459999


Q ss_pred             HHHHH
Q 046022          196 QMDLL  200 (262)
Q Consensus       196 qsDIi  200 (262)
                      .+|++
T Consensus       113 ~~di~  117 (117)
T COG0517         113 LSDIL  117 (117)
T ss_pred             HHHcC
Confidence            99974

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.15  E-value=4.9e-10  Score=86.68  Aligned_cols=119  Identities=21%  Similarity=0.343  Sum_probs=87.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++++.+|++.|.++++..+||++.                       ++++|+++..|+...+.....-  ..
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-----------------------~~~~G~v~~~~l~~~~~~~~~~--~~   56 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-----------------------GKLVGIVTEKDIADALRSFRPL--VR   56 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-----------------------CEEEEEEchHHHHHhhhhhhhc--cc
Confidence            4568999999999999999999999999985                       4899999999998765531100  00


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                      . ..........++.++|..   +  +.++.+++++.+++++|. .+.+++||+.+ +  +           .+|+||+.
T Consensus        57 ~-~~~~~~~~~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~--~-----------~~Gvi~~~  116 (121)
T cd04633          57 D-RHQERRIRNLPVSDIMTR---P--VITIEPDTSVSDVASLMLENNIGGLPVVDD-G--K-----------LVGIVTRT  116 (121)
T ss_pred             c-hhhhhhhhccCHHHHccC---C--ceEECCCCcHHHHHHHHHHcCCCcccEEEC-C--E-----------EEEEEEHH
Confidence            0 000001123467788862   3  578999999999999998 68899999633 1  2           35999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      |+++|
T Consensus       117 dl~~~  121 (121)
T cd04633         117 DILRY  121 (121)
T ss_pred             HhhcC
Confidence            99875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=8.4e-10  Score=85.63  Aligned_cols=120  Identities=20%  Similarity=0.270  Sum_probs=88.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++++.+|++.|.++++..+||++.                       ++++|+++..|+.+.+.......  .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~v~~~~l~~~~~~~~~~~--~   56 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-----------------------NELVGVISDRDYLKAISPFLGTA--G   56 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-----------------------CeEEEEEEHHHHHHHHHHHhccc--c
Confidence            4678999999999999999999999999985                       48999999999988654210000  0


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                      ....+. .....++.++|..   .  +..+.+++++.++++.|. ++.+++||+ +++            +..+|++|..
T Consensus        57 ~~~~~~-~~~~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~vv-~~~------------~~~~Gvit~~  117 (122)
T cd04637          57 ETEKDL-ATLNRRAHQIMTR---D--PITVSPDTPVDEASKLLLENSISCLPVV-DEN------------GQLIGIITWK  117 (122)
T ss_pred             chHHHH-HHHHhHHHHhhcC---C--CeeeCCCCcHHHHHHHHHHcCCCeEeEE-CCC------------CCEEEEEEHH
Confidence            000010 1223468888862   3  578999999999999998 688899995 322            2346999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      |+++|
T Consensus       118 dll~~  122 (122)
T cd04637         118 DLLKY  122 (122)
T ss_pred             HhhhC
Confidence            99986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=3.9e-10  Score=85.58  Aligned_cols=81  Identities=19%  Similarity=0.309  Sum_probs=68.6

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++++++++.+|+++|. ++++.+||..+++            +..+|+||..|+++.+.                   
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~------------~~~~Givt~~Dl~~~~~-------------------   51 (98)
T cd04618           3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRK------------QQFVGMLTITDFILILR-------------------   51 (98)
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEEEeCCC------------CEEEEEEEHHHHhhhee-------------------
Confidence            688999999999999988 6889999963221            23469999999987432                   


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCC-CC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSS-GA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~-g~  260 (262)
                          ++++++++++.+|+++|.++++..+||+|++ |.
T Consensus        52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~   85 (98)
T cd04618          52 ----LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGT   85 (98)
T ss_pred             ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCC
Confidence                7899999999999999999999999999987 53

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.14  E-value=1.1e-09  Score=84.32  Aligned_cols=110  Identities=13%  Similarity=0.167  Sum_probs=81.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++++.+|++.|.++++..+||+|..+                   ..++++|+++..|++.. ..        
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~-------------------~~~~~~G~v~~~dl~~~-~~--------   54 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGK-------------------SGGKLLGIVTSRDIDFL-TD--------   54 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCC-------------------cCCEEEEEEEhHHhhhh-hc--------
Confidence            456889999999999999999999999998620                   01689999999997632 11        


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                               ...++.++|..   ....+...+++++.++++.|. ++.+++||+ ++.            +..+|+||++
T Consensus        55 ---------~~~~v~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv-~~~------------~~~~Gvit~~  109 (114)
T cd04602          55 ---------SETPLSEVMTP---REVLVVAPTGITLEEANEILRESKKGKLPIV-NDD------------GELVALVTRS  109 (114)
T ss_pred             ---------cCCCHHHhcCC---CceEEECCCCCCHHHHHHHHHhcCCCceeEE-CCC------------CeEEEEEEHH
Confidence                     01357888862   211233455999999999998 788999996 322            2346999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      ||++
T Consensus       110 di~~  113 (114)
T cd04602         110 DLKK  113 (114)
T ss_pred             Hhhc
Confidence            9875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.14  E-value=1e-09  Score=83.36  Aligned_cols=109  Identities=21%  Similarity=0.332  Sum_probs=85.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++++.+|++.|.++++..+||++.                       ++++|+++..|+.+...... .    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~dl~~~~~~~~-~----   53 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-----------------------GRLVGIVTLADIRRVPAEGR-E----   53 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-----------------------CeEEEEEEHHHHHHHHhcCc-c----
Confidence            5678999999999999999999999999985                       37999999999887554311 0    


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                               ...++.++|..   +  +.++.+++++.++++.|. .+.+++||. ++.            +...|+||..
T Consensus        54 ---------~~~~~~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~V~-~~~------------~~~~G~it~~  106 (111)
T cd04612          54 ---------ATVLVGDVMTR---D--PVTASPDETLRDALKRMAERDIGRLPVV-DDS------------GRLVGIVSRS  106 (111)
T ss_pred             ---------cccCHHHhccC---C--CeEECCCCCHHHHHHHHHhCCCCeeeEE-cCC------------CCEEEEEEHH
Confidence                     00256677752   3  578999999999999998 688899996 322            2345999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      ||+++
T Consensus       107 di~~~  111 (111)
T cd04612         107 DLLRA  111 (111)
T ss_pred             HhhhC
Confidence            99874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.13  E-value=6.4e-10  Score=86.81  Aligned_cols=104  Identities=22%  Similarity=0.426  Sum_probs=77.7

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccc---hhhhccccch
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASEL---KDITSHSIRE  220 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l---~~l~~~ti~e  220 (262)
                      +.++.+++++.+|++.|. ++++++||. +++.           ++..|+||+.|+++++..+....   .......+..
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~-d~~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~   70 (123)
T cd04627           3 FIPVPSTASLFQAIEILGSGGIHRVAVT-EEES-----------GEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRD   70 (123)
T ss_pred             ceecCCCCCHHHHHHHHhhCCcceEEEE-eCCC-----------CcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhh
Confidence            578999999999999998 578899995 3321           23359999999999876542211   1100011222


Q ss_pred             hcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          221 LGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       221 L~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      ..++.+++.++++++++.+|+++|.+++++.+||+|++|.
T Consensus        71 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~  110 (123)
T cd04627          71 LTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGN  110 (123)
T ss_pred             cccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCc
Confidence            2357788999999999999999999999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.13  E-value=7.4e-10  Score=83.43  Aligned_cols=102  Identities=18%  Similarity=0.283  Sum_probs=81.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      ++.++++++++.+|++.|.+++...+||++.                       ++++|+++..|++....         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~Giv~~~~l~~~~~---------   49 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED-----------------------GKLVGIITSRDVRRAHP---------   49 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC-----------------------CEEEEEEehHHhhcccc---------
Confidence            4568999999999999999999999999973                       58999999999875321         


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                                ..++.++|..   .  +.++.+++++.++++.|. ++..++||+.+ +             ..+|+||+.
T Consensus        50 ----------~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-------------~~~G~it~~  100 (105)
T cd04599          50 ----------NRLVADAMTR---E--VVTISPEASLLEAKRLMEEKKIERLPVLRE-R-------------KLVGIITKG  100 (105)
T ss_pred             ----------cCCHHHHccC---C--CEEECCCCCHHHHHHHHHHcCCCEeeEEEC-C-------------EEEEEEEHH
Confidence                      1257778752   2  578999999999999988 78889999633 1             235999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      ||++
T Consensus       101 ~l~~  104 (105)
T cd04599         101 TIAL  104 (105)
T ss_pred             Hhcc
Confidence            9873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.12  E-value=2.9e-09  Score=103.52  Aligned_cols=115  Identities=11%  Similarity=0.107  Sum_probs=91.2

Q ss_pred             CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022           38 RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS  117 (262)
Q Consensus        38 ~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~  117 (262)
                      ++++++++++|+.+|++.|.++++..+||+|...                   ..++++|+|+..|+.. ..        
T Consensus       108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~-------------------~~GklvGIVT~~DL~~-v~--------  159 (505)
T PLN02274        108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGT-------------------MGSKLLGYVTKRDWDF-VN--------  159 (505)
T ss_pred             CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCC-------------------cCCeEEEEEEHHHHhh-cc--------
Confidence            4678999999999999999999999999998631                   0168999999999742 21        


Q ss_pred             CCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecH
Q 046022          118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQ  196 (262)
Q Consensus       118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITq  196 (262)
                               ....+|.++|.. ...  ++++.+++++.+|+++|. .+++++||+ +++            ++++|+||+
T Consensus       160 ---------~~~~~V~eIMt~-~~~--lvtv~~~~sL~eAl~~m~~~~~~~LPVV-D~~------------g~LvGvITr  214 (505)
T PLN02274        160 ---------DRETKLSEVMTS-DDD--LVTAPAGIDLEEAEAVLKDSKKGKLPLV-NED------------GELVDLVTR  214 (505)
T ss_pred             ---------ccCCcHHHHhcc-CCC--cEEECCCCCHHHHHHHHHHcCCCEEEEE-cCC------------CeEEEEEEH
Confidence                     113579999973 222  578999999999999998 799999996 322            234599999


Q ss_pred             HHHHHHHHh
Q 046022          197 MDLLRFMMN  205 (262)
Q Consensus       197 sDIir~L~~  205 (262)
                      +||++++..
T Consensus       215 ~DIlk~~~~  223 (505)
T PLN02274        215 TDVKRVKGY  223 (505)
T ss_pred             HHHHHHhhC
Confidence            999998864

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.12  E-value=1.5e-09  Score=83.53  Aligned_cols=119  Identities=21%  Similarity=0.250  Sum_probs=87.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      ++.++++++++.+|++.|.+++...+||++.                       ++++|+++..|++.+.......    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~i~~~~l~~~~~~~~~~----   54 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-----------------------GKLVGIVTDRDLKLASPSKATT----   54 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-----------------------CeEEEEEeHHHHHHhhhccccc----
Confidence            4568999999999999999999999999985                       4899999999998876431100    


Q ss_pred             CCcchHHh-hhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecH
Q 046022          119 DAPDDLDK-KMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQ  196 (262)
Q Consensus       119 ~~~~~~~~-~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITq  196 (262)
                      ....+... .-..++.++|..   +  +.++.+++++.+++..|. .+.+++||. ++.            +..+|+||+
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~------------~~~~Gvvt~  116 (122)
T cd04585          55 LDIWELYYLLSKIKVSDIMTR---D--PITVSPDASVEEAAELMLERKISGLPVV-DDQ------------GRLVGIITE  116 (122)
T ss_pred             ccchhhhhhhcccCHHHhccC---C--CeEeCCCCcHHHHHHHHHHcCCCceeEE-CCC------------CcEEEEEEH
Confidence            00001100 113467788862   3  578999999999999998 688889995 322            234699999


Q ss_pred             HHHHHH
Q 046022          197 MDLLRF  202 (262)
Q Consensus       197 sDIir~  202 (262)
                      .||+++
T Consensus       117 ~di~~~  122 (122)
T cd04585         117 SDLFRA  122 (122)
T ss_pred             HHhhhC
Confidence            999874

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.10  E-value=2e-09  Score=82.05  Aligned_cols=110  Identities=18%  Similarity=0.330  Sum_probs=84.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++++.+|++.|.+++...+||++.                       ++++|+++..|++........     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~i~~~~l~~~~~~~~~-----   53 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-----------------------DRLVGIVTDRDIVVRAVAEGR-----   53 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-----------------------CEEEEEEEhHHHHHHHhhccC-----
Confidence            5678999999999999999999999999985                       489999999998744332110     


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                          .   ....++.++|..   .  +.++.+++++.++++.|. .+.+++||. ++.            +..+|+||+.
T Consensus        54 ----~---~~~~~~~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~V~-~~~------------~~~~G~it~~  108 (113)
T cd04622          54 ----D---PDTTTVGDVMTR---G--VVTVTEDDDVDEAARLMREHQVRRLPVV-DDD------------GRLVGIVSLG  108 (113)
T ss_pred             ----C---cccCCHHHhccC---C--ccEECCCCCHHHHHHHHHHcCCCeeeEE-CCC------------CcEEEEEEHH
Confidence                0   011248888862   3  577999999999999998 688999995 322            2346999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      |+++
T Consensus       109 di~~  112 (113)
T cd04622         109 DLAR  112 (113)
T ss_pred             Hhhc
Confidence            9975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.09  E-value=2.6e-09  Score=81.50  Aligned_cols=110  Identities=15%  Similarity=0.191  Sum_probs=85.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++++.+|++.|.+++...+||++.                       ++++|+++..|++..+......    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----------------------~~~~G~v~~~dl~~~~~~~~~~----   54 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-----------------------NKLVGIFTSKDIALRVVAQGLD----   54 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-----------------------CEEEEEEEhHHHHHHHHhcCCC----
Confidence            4568899999999999999999999999985                       4899999999998766532100    


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                              ....++.++|..   .  +.++.+++++.++++.|. .+.+++||+.+ .            +..+|+||..
T Consensus        55 --------~~~~~v~~i~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~------------~~~~Gvvs~~  108 (113)
T cd04587          55 --------PESTLVERVMTP---N--PVCATSDTPVLEALHLMVQGKFRHLPVVDK-S------------GQVVGLLDVT  108 (113)
T ss_pred             --------cCcCCHHHhcCC---C--CeEEcCCCCHHHHHHHHHHcCCCcccEECC-C------------CCEEEEEEHH
Confidence                    012468888862   2  468999999999999998 68889999533 2            2335999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      ||+.
T Consensus       109 dl~~  112 (113)
T cd04587         109 KLTH  112 (113)
T ss_pred             Hhcc
Confidence            9864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.09  E-value=1.7e-09  Score=82.05  Aligned_cols=99  Identities=16%  Similarity=0.225  Sum_probs=79.4

Q ss_pred             EEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCCCC
Q 046022           41 VEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDA  120 (262)
Q Consensus        41 v~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~~~  120 (262)
                      +++++++++.+|++.|.++++..+||++.                       ++++|+++..|+.+...           
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~v~~~~l~~~~~-----------   49 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-----------------------NKFLGAVYLKDIENATY-----------   49 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-----------------------CEEEEEEEHHHHhhhcc-----------
Confidence            47899999999999999999999999985                       38999999999875311           


Q ss_pred             cchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHH
Q 046022          121 PDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDL  199 (262)
Q Consensus       121 ~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDI  199 (262)
                               .++.++|..   .  ..++.+++++.++++.|. ++.+++||+ +++             ..+|+||+.||
T Consensus        50 ---------~~~~~~~~~---~--~~~v~~~~~l~~a~~~~~~~~~~~~~Vv-~~~-------------~~iGvit~~dl  101 (104)
T cd04594          50 ---------GDVVDYIVR---G--IPYVRLTSTAEEAWEVMMKNKTRWCPVV-DDG-------------KFKGIVTLDSI  101 (104)
T ss_pred             ---------cchhhhhhc---C--CcEEcCCCCHHHHHHHHHHcCcceEEEE-ECC-------------EEEEEEEHHHh
Confidence                     146667752   2  467999999999999998 688889996 321             23599999998


Q ss_pred             HH
Q 046022          200 LR  201 (262)
Q Consensus       200 ir  201 (262)
                      ++
T Consensus       102 ~~  103 (104)
T cd04594         102 LD  103 (104)
T ss_pred             hc
Confidence            75

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.08  E-value=3.9e-09  Score=101.40  Aligned_cols=120  Identities=16%  Similarity=0.260  Sum_probs=94.2

Q ss_pred             eeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHH
Q 046022           29 KVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHI  108 (262)
Q Consensus        29 ~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l  108 (262)
                      +.+++|.  ++++++++++|+.+|++.|.++++.++||++.+.               .    .++++|+|+..|++...
T Consensus        81 ~~~~~~~--~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~---------------~----~~~lvGIVt~rDL~~~~  139 (450)
T TIGR01302        81 RAENGII--SDPVTISPETTVADVLELMERKGISGIPVVEDGD---------------M----TGKLVGIITKRDIRFVK  139 (450)
T ss_pred             cccCcee--cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCC---------------C----CCeEEEEEEHHHHhhhh
Confidence            4677774  4678999999999999999999999999998641               0    04899999999986321


Q ss_pred             hCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceeccc
Q 046022          109 AGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVES  187 (262)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~  187 (262)
                       .                 ...++.++|..  .+  ++++.+++++.++++.|. ++.+++||+ ++.            
T Consensus       140 -~-----------------~~~~V~dvm~~--~~--~~~V~~~~sl~eal~~m~~~~~~~lpVV-De~------------  184 (450)
T TIGR01302       140 -D-----------------KGKPVSEVMTR--EE--VITVPEGIDLEEALKVLHEHRIEKLPVV-DKN------------  184 (450)
T ss_pred             -c-----------------CCCCHHHhhCC--CC--CEEECCCCcHHHHHHHHHHcCCCeEEEE-cCC------------
Confidence             1                 12478899862  13  688999999999999998 789999996 432            


Q ss_pred             CCeeeEecHHHHHHHHH
Q 046022          188 ASSYQMLTQMDLLRFMM  204 (262)
Q Consensus       188 ~~~~giITqsDIir~L~  204 (262)
                      +...|+||..||++.+.
T Consensus       185 G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       185 GELVGLITMKDIVKRRK  201 (450)
T ss_pred             CcEEEEEEhHHhhhccc
Confidence            23459999999999763

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.07  E-value=1.4e-09  Score=82.51  Aligned_cols=105  Identities=18%  Similarity=0.292  Sum_probs=81.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +.++++.++++.+|++.|.+++..++||++..                      ++++|+++..|+.....         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~----------------------~~~~G~v~~~~l~~~~~---------   51 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDD----------------------GKLVGIVTNRDLRFETD---------   51 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC----------------------CEEEEEEEhhHeeeccc---------
Confidence            45688999999999999999999999999864                      68999999999753210         


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCC-CCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSP-NTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQ  196 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~-~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITq  196 (262)
                               ...++.++|..   .  +..+.+ ++++.++++.|. .+.+++||+ ++.            +..+|+||+
T Consensus        52 ---------~~~~v~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv-~~~------------~~~~Gvi~~  104 (110)
T cd04601          52 ---------LDKPVSEVMTP---E--NLLTTVEGTSLEEALELLHEHKIEKLPVV-DDE------------GKLKGLITV  104 (110)
T ss_pred             ---------CCCCHHHhccc---C--ceEEecCCCCHHHHHHHHHHhCCCeeeEE-cCC------------CCEEEEEEh
Confidence                     12367888852   2  244555 999999999998 688889995 322            234699999


Q ss_pred             HHHHH
Q 046022          197 MDLLR  201 (262)
Q Consensus       197 sDIir  201 (262)
                      +|+++
T Consensus       105 ~dil~  109 (110)
T cd04601         105 KDIEK  109 (110)
T ss_pred             hhhhc
Confidence            99986

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.07  E-value=1.6e-09  Score=82.55  Aligned_cols=102  Identities=18%  Similarity=0.288  Sum_probs=79.6

Q ss_pred             EcCCCCHHHHHHHHHhCC-----CceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022           43 VPHTASLAHTMNALVANK-----VVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS  117 (262)
Q Consensus        43 v~~~~tv~eA~~~L~~~~-----i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~  117 (262)
                      +++++|+.+|++.|.+++     +..+||++++                      ++++|+++..|++..   .      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~----------------------~~~~G~v~~~~l~~~---~------   50 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE----------------------GRLLGVVSLRDLLLA---D------   50 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCC----------------------CCEEEEEEHHHHhcC---C------
Confidence            568899999999999877     5789999864                      589999999998641   0      


Q ss_pred             CCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecH
Q 046022          118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQ  196 (262)
Q Consensus       118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITq  196 (262)
                                ...+++++|..   +  +..+.+++++.++++.|. .+.+.+||+ ++.            ++.+|+||.
T Consensus        51 ----------~~~~v~~~~~~---~--~~~i~~~~~~~~~~~~~~~~~~~~~~Vv-~~~------------~~~~Gvit~  102 (109)
T cd04606          51 ----------PDTPVSDIMDT---D--VISVSADDDQEEVARLFEKYDLLALPVV-DEE------------GRLVGIITV  102 (109)
T ss_pred             ----------CcchHHHHhCC---C--CeEEcCCCCHHHHHHHHHHcCCceeeeE-CCC------------CcEEEEEEh
Confidence                      01357788752   2  578999999999999998 788899995 322            234699999


Q ss_pred             HHHHHHH
Q 046022          197 MDLLRFM  203 (262)
Q Consensus       197 sDIir~L  203 (262)
                      +|+++.+
T Consensus       103 ~dll~~~  109 (109)
T cd04606         103 DDVIDVI  109 (109)
T ss_pred             HHhhhhC
Confidence            9998753

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.07  E-value=1.1e-09  Score=97.50  Aligned_cols=103  Identities=17%  Similarity=0.284  Sum_probs=84.7

Q ss_pred             cceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022           27 EAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA  106 (262)
Q Consensus        27 ~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~  106 (262)
                      -.+|+|+|... ++.++++++++.+|++.|.++++..+||+|++                      ++++|+++..|+..
T Consensus       154 ~~~v~~im~~~-~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~----------------------g~~~Givt~~dl~~  210 (268)
T TIGR00393       154 LVKVKDLMQTT-DLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN----------------------NQLVGVFTDGDLRR  210 (268)
T ss_pred             hhhHHHHhCCC-CCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC----------------------CCEEEEEEcHHHHH
Confidence            36899999532 27799999999999999999999999999865                      58999999999988


Q ss_pred             HHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEee
Q 046022          107 HIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVP  171 (262)
Q Consensus       107 ~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~  171 (262)
                      .+....              ....++.++|..   .  +.++.+++++.+|++.|. .+.+++||+
T Consensus       211 ~~~~~~--------------~~~~~v~~im~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv  257 (268)
T TIGR00393       211 ALLGGG--------------SLKSEVRDFMTL---G--PKTFKLDALLLEALEFLERRKITSLVVV  257 (268)
T ss_pred             HHhcCC--------------cccCcHHHhCCC---C--CeEECCCCcHHHHHHHHHHcCCcEEEEE
Confidence            654311              123578999962   2  578999999999999998 689999996

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.06  E-value=2.4e-09  Score=86.09  Aligned_cols=109  Identities=23%  Similarity=0.362  Sum_probs=76.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      .++++++++++.+|++.|.++++.++||+|++                      ++++|+|+..|+++++.......  .
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~----------------------g~l~Givt~~Dl~~~~~~~~~~~--~   57 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD----------------------DFLEGILTLGDIQRFLFTNKTTR--V   57 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCC----------------------CeEEEEEEHHHHHHHHhhccccc--c
Confidence            46789999999999999999999999999975                      58999999999999886422110  0


Q ss_pred             CCcchHHhhhccccccccccC------CCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecC
Q 046022          119 DAPDDLDKKMSAPVSSIIGHC------PEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMD  173 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~------~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~  173 (262)
                      ....+...-....+.++|...      ..+  ++++.+++++.+|+++|. ++++++||+.+
T Consensus        58 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~--~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          58 QPEDETKQTNTCLVSSVCTKGISYGGQECG--LWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             ccchhhcccccccHHHHhhhhhhhcccCCC--CEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence            000000000012233444200      013  688999999999999998 79999999643

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.06  E-value=7.4e-09  Score=98.92  Aligned_cols=165  Identities=15%  Similarity=0.233  Sum_probs=117.6

Q ss_pred             hhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022           24 LLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD  103 (262)
Q Consensus        24 ~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D  103 (262)
                      .|.+.+|+++|++..+++.++.+.+++++.+.+.+++.+++||++.+                     .+.++|++...|
T Consensus       202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~---------------------~D~iiGiv~~Kd  260 (429)
T COG1253         202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD---------------------LDNIIGIVHVKD  260 (429)
T ss_pred             ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC---------------------CCcEEEEEEHHH
Confidence            35789999999998999999999999999999999999999999933                     368999999999


Q ss_pred             HHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          104 ILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       104 il~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      ++.+.......           .    .....+.    .  ++.|.+++++.++++.|. ++.|-..| .|+-       
T Consensus       261 ll~~~~~~~~~-----------~----~~~~~~~----~--~~~Vpet~~~~~lL~~~r~~~~hmAiV-vDEy-------  311 (429)
T COG1253         261 LLRALLDGQSD-----------L----DLRVLVR----P--PLFVPETLSLSDLLEEFREERTHMAIV-VDEY-------  311 (429)
T ss_pred             HHHHHhcCccc-----------c----chhhccc----C--CeEecCCCcHHHHHHHHHHhCCeEEEE-EEcC-------
Confidence            99998863210           0    0111121    1  477999999999999999 45555555 4432       


Q ss_pred             eecccCCeeeEecHHHHHHHHHhhcc-cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHh
Q 046022          183 ELVESASSYQMLTQMDLLRFMMNHAS-ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRA  246 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIir~L~~~~~-~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~  246 (262)
                           |...|+||.+||+.-+...+. +........+-.  ..... ..+....++.+..+.+.-
T Consensus       312 -----G~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~--~~~~~-~~v~G~~~l~e~~~~l~~  368 (429)
T COG1253         312 -----GGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQ--RDDDG-WLVDGRVPLEELEELLGI  368 (429)
T ss_pred             -----CCeEEEeEHHHHHHHHhCCCcCcccccccccceE--ecCCc-EEEeccccHHHHHHHhCC
Confidence                 334699999999999887652 221100111111  12234 677888888887776643

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.04  E-value=2.6e-09  Score=81.66  Aligned_cols=102  Identities=21%  Similarity=0.332  Sum_probs=81.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      .+..+++++++.++.+.|.+++...+||+++..                   ..++++|+++..|+.....         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-------------------~~~~~~G~v~~~dl~~~~~---------   54 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE-------------------ESPRLVGYILRSQLVVALK---------   54 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCC-------------------CCCEEEEEEeHHHHHHHHH---------
Confidence            567899999999999999999999999998620                   0158999999999876542         


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                             .        +|..   +  +.++.+++++.++++.|. ++.+.+||. ++             ++.+|+||..
T Consensus        55 -------~--------~m~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~pVv-~~-------------~~~~Gvvt~~  100 (105)
T cd04591          55 -------N--------YIDP---S--PFTVSPRTSLEKVHQLFRKLGLRHLLVV-DE-------------GRLVGIITRK  100 (105)
T ss_pred             -------H--------hccC---C--CceECCCCcHHHHHHHHHHcCCCEEEEE-EC-------------CeEEEEEEhh
Confidence                   0        5542   2  567999999999999998 799999996 32             1235999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      ||++|
T Consensus       101 dl~~~  105 (105)
T cd04591         101 DLLKA  105 (105)
T ss_pred             hhhcC
Confidence            99874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.04  E-value=3.2e-09  Score=80.18  Aligned_cols=105  Identities=20%  Similarity=0.360  Sum_probs=83.0

Q ss_pred             CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022           38 RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS  117 (262)
Q Consensus        38 ~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~  117 (262)
                      +++++++.+.++.+|++.|.+++...+||++.                       ++++|+++..|++..  . .     
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-----------------------~~~~g~v~~~~l~~~--~-~-----   50 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-----------------------GKVVGIVSARDLLGK--D-P-----   50 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-----------------------CEEEEEEEHHHhhcc--C-c-----
Confidence            35678999999999999999888889999874                       489999999998742  0 0     


Q ss_pred             CCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecH
Q 046022          118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQ  196 (262)
Q Consensus       118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITq  196 (262)
                                 ..+++++|..   .  +.++.+++++.++++.|. .+.+++||. ++.            +..+|+||.
T Consensus        51 -----------~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~------------g~~~Gvi~~  101 (107)
T cd04610          51 -----------DETVEEIMSK---D--LVVAVPEMDIMDAARVMFRTGISKLPVV-DEN------------NNLVGIITN  101 (107)
T ss_pred             -----------cccHHHhCCC---C--CeEECCCCCHHHHHHHHHHhCCCeEeEE-CCC------------CeEEEEEEH
Confidence                       1257888852   2  477999999999999987 678899995 322            234699999


Q ss_pred             HHHHHH
Q 046022          197 MDLLRF  202 (262)
Q Consensus       197 sDIir~  202 (262)
                      .||+++
T Consensus       102 ~di~~~  107 (107)
T cd04610         102 TDVIRS  107 (107)
T ss_pred             HHhhcC
Confidence            999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.04  E-value=5e-09  Score=78.46  Aligned_cols=111  Identities=23%  Similarity=0.384  Sum_probs=85.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      ++++++.++++.++++.|.+++...+||++++                      ++++|+++..|++.++......    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------~~~~G~v~~~~l~~~~~~~~~~----   55 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD----------------------GRLVGIVTERDLLRALAEGGLD----   55 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCC----------------------CCEEEEEeHHHHHHHHHhccCC----
Confidence            45688999999999999999999999999864                      5899999999999887642110    


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                               ....+.++|..   .  +..+.+++++.+++..|. .+.+.+||. +++            ++..|++|+.
T Consensus        56 ---------~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~------------~~~~G~i~~~  108 (113)
T cd02205          56 ---------PLVTVGDVMTR---D--VVTVSPDTSLEEAAELMLEHGIRRLPVV-DDE------------GRLVGIVTRS  108 (113)
T ss_pred             ---------ccccHHHHhcC---C--ceecCCCcCHHHHHHHHHHcCCCEEEEE-cCC------------CcEEEEEEHH
Confidence                     00115566652   2  577899999999999998 578999995 432            2346999999


Q ss_pred             HHHHH
Q 046022          198 DLLRF  202 (262)
Q Consensus       198 DIir~  202 (262)
                      |++++
T Consensus       109 dl~~~  113 (113)
T cd02205         109 DILRA  113 (113)
T ss_pred             HhhcC
Confidence            99863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.03  E-value=4.4e-09  Score=81.15  Aligned_cols=118  Identities=19%  Similarity=0.294  Sum_probs=86.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      ++.++++++++.+|++.|.+++...+||+|.+                      ++++|+++..|++........-   .
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~----------------------~~~~G~v~~~~l~~~~~~~~~~---~   56 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE----------------------GRLVGIVTDRDLRDASPSPFTT---L   56 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCC----------------------CcEEEEEEHHHHHHHhhhhccc---c
Confidence            46789999999999999999999999999874                      5899999999987754321000   0


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                       ...........++.++|..   .  ++++.+++++.++++.|. .+.+.+||..+   +++           +|++|..
T Consensus        57 -~~~~~~~~~~~~v~~~~~~---~--~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~---~~~-----------~Gvv~~~  116 (121)
T cd04584          57 -SEHELYLLLKMPVKEIMTK---D--VITVHPLDTVEEAALLMREHRIGCLPVVED---GRL-----------VGIITET  116 (121)
T ss_pred             -hhhhhhhhcCcCHHHHhhC---C--CeEECCCCcHHHHHHHHHHcCCCeEEEeeC---CEE-----------EEEEEHH
Confidence             0000001123468888862   2  578999999999999988 67788999533   123           5999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      ||++
T Consensus       117 di~~  120 (121)
T cd04584         117 DLLR  120 (121)
T ss_pred             Hhhc
Confidence            9975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.02  E-value=2.7e-09  Score=85.82  Aligned_cols=104  Identities=21%  Similarity=0.279  Sum_probs=77.0

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhh-------hcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDI-------TSH  216 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l-------~~~  216 (262)
                      +.++.+++++.+|++.|. ++...+||+ +++            ++.+|+||..|+++++......-...       ..+
T Consensus         3 ~~~v~~~~~l~ea~~~m~~~~~~~~~Vv-D~~------------g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~   69 (133)
T cd04592           3 YIKVSPTTTLKEALNLMLDEKQSCVLVV-DSD------------DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTC   69 (133)
T ss_pred             ceEECCCCCHHHHHHHHHHcCCCEEEEE-CCC------------CeEEEEEEHHHHHHHHhhccccccccchhhcccccc
Confidence            578999999999999998 688899996 432            23459999999999987532110000       001


Q ss_pred             ccchh-------cccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCCC
Q 046022          217 SIREL-------GALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGAT  261 (262)
Q Consensus       217 ti~eL-------~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~~  261 (262)
                      .+.++       +.|.++++++++++++.+|+++|.++++.++||+|+++++
T Consensus        70 ~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~~~  121 (133)
T cd04592          70 LVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVDR  121 (133)
T ss_pred             cHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCcCc
Confidence            12222       1135679999999999999999999999999999988765

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.01  E-value=2e-09  Score=96.26  Aligned_cols=145  Identities=21%  Similarity=0.323  Sum_probs=102.6

Q ss_pred             CeEEEEEeHHHHHHHHhCCCCCCCCCCCcchHHhhh-------------ccccccccccCCCCCeeEEeCCCCCHHHHHH
Q 046022           93 KHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKM-------------SAPVSSIIGHCPEGLSLWTLSPNTSILDCME  159 (262)
Q Consensus        93 ~~~vGivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~-------------~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~  159 (262)
                      ..-+|| +..|+-..+-+-.+..  |-..+|++..+             .-.-.+||++   +  ++++.+++++.+|..
T Consensus       198 ~~rvgf-s~~Dld~aL~~~~E~l--DIdrddLe~llr~~elqa~~R~~~~LtcadIMSr---d--Vvtv~~~ts~dhA~~  269 (382)
T COG3448         198 SQRVGF-SSEDLDAALQRLGETL--DIDRDDLERLLRETELQALRRRMGELTCADIMSR---D--VVTVSTDTSIDHARK  269 (382)
T ss_pred             hhccCC-CHHHHHHHHHhcCcee--cCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc---c--ceecCCcCChHHHHH
Confidence            345676 8889887777532221  11122222111             2355689973   4  899999999999999


Q ss_pred             HHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh-cccchhhhccccchhcccCcCeEEEeCCCcH
Q 046022          160 VFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH-ASELKDITSHSIRELGALNENVFAITESTKV  237 (262)
Q Consensus       160 ~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~-~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~  237 (262)
                      +|. ++++.+||. |++            .+.+||+||+|+.+...-. ...+..+..-+++  ++|++++.|+.+++|+
T Consensus       270 ll~~H~ikaLPV~-d~~------------~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk--~imt~~v~tv~pdtpa  334 (382)
T COG3448         270 LLQEHRIKALPVL-DEH------------RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVK--GIMTTPVVTVRPDTPA  334 (382)
T ss_pred             HHHHcCccccccc-ccc------------cceeeeeeHHHHhhccCcchHHHhhccCCCccc--ccccCcceeecCCCcH
Confidence            888 799999995 432            2335999999998733221 1112233444566  4799999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEEcCCCC
Q 046022          238 IDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       238 ~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      .+.+.++.+.+..++||+|+.|.
T Consensus       335 ~~lvp~lad~g~H~lpvld~~g~  357 (382)
T COG3448         335 VELVPRLADEGLHALPVLDAAGK  357 (382)
T ss_pred             HHHHHHhhcCCcceeeEEcCCCc
Confidence            99999999999999999999884

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.99  E-value=1.2e-09  Score=74.38  Aligned_cols=56  Identities=20%  Similarity=0.365  Sum_probs=50.9

Q ss_pred             eccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHh
Q 046022           30 VRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIA  109 (262)
Q Consensus        30 v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~  109 (262)
                      |+|+|.  ++++++++++++.+|++.|.++++.++||+|++                      ++++|+++..||++++.
T Consensus         1 v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~----------------------~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMT--PPPITVSPDDSLEEALEIMRKNGISRLPVVDED----------------------GKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSB--SSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT----------------------SBEEEEEEHHHHHHHHH
T ss_pred             CeECCc--CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC----------------------CEEEEEEEHHHHHhhhh
Confidence            578995  378899999999999999999999999999875                      69999999999999875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.99  E-value=6.6e-09  Score=80.65  Aligned_cols=100  Identities=13%  Similarity=0.208  Sum_probs=75.6

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccch---
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRE---  220 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~e---  220 (262)
                      +.++.+++++.+|++.|. .+.+++||+ +++            ++.+|++|..|+++++..+....   ...++.+   
T Consensus         3 ~~~i~~~~~l~~a~~~~~~~~~~~~pVv-~~~------------~~~~Giv~~~dl~~~~~~~~~~~---~~~~~~~~~~   66 (120)
T cd04641           3 IATARPDTPLIDVLDMLVERRVSALPIV-DEN------------GKVVDVYSRFDVINLAKEGAYNN---LDLTVGEALE   66 (120)
T ss_pred             cEEEcCCCCHHHHHHHHHHcCCCeeeEE-CCC------------CeEEEEEeHHHHHHHHhcCcccc---ccCCHHHHHh
Confidence            578999999999999998 688999996 332            23459999999998775432100   0111221   


Q ss_pred             -hcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          221 -LGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       221 -L~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                       ...+.+++.++.+++++.+|+++|.+++++.+||+|++|.
T Consensus        67 ~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~  107 (120)
T cd04641          67 RRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKR  107 (120)
T ss_pred             hcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCC
Confidence             1234567899999999999999999999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.98  E-value=8.1e-09  Score=83.23  Aligned_cols=121  Identities=21%  Similarity=0.310  Sum_probs=87.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCC---CCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDD---QMN  115 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~---~l~  115 (262)
                      +++++++++++.+|++.|.++++.++||++.                       ++++|+++..|+..++....   .+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-----------------------~~~~G~v~~~dl~~~~~~~~~~~~~~   58 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-----------------------GKLVGIVSESDILKLLVTHDPSGNLW   58 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-----------------------CeEEEEecHHHHHHHHHhccCccccc
Confidence            4678999999999999999999999999985                       37999999999988765321   000


Q ss_pred             CCCC------------Ccch----HHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcc
Q 046022          116 GSDD------------APDD----LDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMEN  178 (262)
Q Consensus       116 ~~~~------------~~~~----~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~  178 (262)
                      ..+.            .+.+    ..+....++.++|..   +  +.++.+++++.+++..|. .+.+++||+.+ +  +
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~--~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~--~  130 (143)
T cd04634          59 LPSPLELIELPLREFINWEETKRALTDAGKMKVRDIMTK---K--VITISPDASIEDAAELMVRHKIKRLPVVED-G--R  130 (143)
T ss_pred             cCCcceeeeccchheeehHHHHHHHHHHhcCCHHHHcCC---C--CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-C--E
Confidence            0000            0000    011124567788852   3  578999999999999998 68889999633 1  2


Q ss_pred             cccceecccCCeeeEecHHHHHH
Q 046022          179 ISGVELVESASSYQMLTQMDLLR  201 (262)
Q Consensus       179 ~~g~~~~~~~~~~giITqsDIir  201 (262)
                      +           +|+||+.|+++
T Consensus       131 ~-----------~Gvvt~~dl~~  142 (143)
T cd04634         131 L-----------VGIVTRGDIIE  142 (143)
T ss_pred             E-----------EEEEEHHHhhc
Confidence            3           59999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.97  E-value=2.7e-09  Score=97.38  Aligned_cols=120  Identities=17%  Similarity=0.243  Sum_probs=100.6

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      .+|.|+|++-.....+..++++++-.++-.+.+.+++||+|..                      .+++|+|+++|++..
T Consensus       188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~----------------------~kvvGvVt~rDv~~~  245 (432)
T COG4109         188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRS----------------------MKVVGVVTMRDVLDK  245 (432)
T ss_pred             eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceeccc----------------------ceEEEEEEehhhhcC
Confidence            4699999866677899999999999999999999999999974                      689999999997643


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      -.                   .+++..+|++   +  +.++.+.+|+..+..+|. .|+.-+||+.++            
T Consensus       246 ~~-------------------~t~ieKVMtk---n--p~tv~~~tsVAsvaq~MiwE~iem~PVv~~n------------  289 (432)
T COG4109         246 KP-------------------STTIEKVMTK---N--PITVRAKTSVASVAQMMIWEGIEMLPVVDSN------------  289 (432)
T ss_pred             CC-------------------CccHHHHhcc---C--CeeecccchHHHHHHHHHhccceeeeEEcCC------------
Confidence            22                   3578889984   5  489999999999999998 999999996432            


Q ss_pred             cCCeeeEecHHHHHHHHHhh
Q 046022          187 SASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~~~  206 (262)
                       .+.+||||++|+++.|...
T Consensus       290 -~~llGiitR~dvlk~lq~~  308 (432)
T COG4109         290 -NTLLGIITRQDVLKSLQMI  308 (432)
T ss_pred             -ceEEEEEEHHHHHHHHHHh
Confidence             2346999999999988754

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.95  E-value=1.4e-08  Score=78.25  Aligned_cols=98  Identities=17%  Similarity=0.280  Sum_probs=77.7

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. .+...+||+ ++.            ++..|+||..|+++++.....   .....+++++  
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv-d~~------------g~~~G~vt~~dl~~~~~~~~~---~~~~~~v~~~--   64 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVC-DPH------------GKLAGVLTKTDVVRQMGRCGG---PGCTAPVENV--   64 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEE-CCC------------CCEEEEEehHHHHHHHhhcCC---CcccCCHHHH--
Confidence            567899999999999998 678888885 322            234599999999987654211   1123456664  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.++++++.+++++.+|++.|.++++..+||+|++|.
T Consensus        65 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~  101 (114)
T cd04619          65 MTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENAR  101 (114)
T ss_pred             hcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCc
Confidence            7788999999999999999999999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.94  E-value=2e-08  Score=94.54  Aligned_cols=181  Identities=17%  Similarity=0.224  Sum_probs=134.1

Q ss_pred             CCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCC
Q 046022           37 KRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNG  116 (262)
Q Consensus        37 ~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~  116 (262)
                      +++++.+.+..++-+|...|.++++.++||.|.+.                     +.+..++|..-|++++-.....  
T Consensus       161 ~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~---------------------~~v~~ilt~~rIl~~l~~~~~~--  217 (381)
T KOG1764|consen  161 KPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPET---------------------GEVLYILTQRRILKFLWLNGRL--  217 (381)
T ss_pred             CCCceeecCcHHHHHHHHHHHhCCccceeeecccc---------------------cceeeehhHHHHHHHHHHhhcc--
Confidence            45668999999999999999999999999999542                     5899999999999998753211  


Q ss_pred             CCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEec
Q 046022          117 SDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLT  195 (262)
Q Consensus       117 ~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giIT  195 (262)
                           ..+...+..++.++---...+  +..+..++++.+|+++|. +++..+||+...+             ..+|.+|
T Consensus       218 -----~~~~~~l~~s~~dl~ig~~~~--i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g-------------~~v~~~s  277 (381)
T KOG1764|consen  218 -----LPLPSLLSKSLSDLGIGTWSN--IASISEDTPVIEALKIMSERRISALPVVDENG-------------KKVGNYS  277 (381)
T ss_pred             -----cccHHHhhCCHHHhCcchhhh--heeecCCCcHHHHHHHHHhcCcCcceEEcCCC-------------ceeccee
Confidence                 013355666777754322233  678999999999999999 7999999964322             2259999


Q ss_pred             HHHHHHHHHhhc-ccchhh-hccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          196 QMDLLRFMMNHA-SELKDI-TSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       196 qsDIir~L~~~~-~~l~~l-~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      ..|+...+.+.. +.+... ........++-...|++++++.++.+++..|..+++.++.|||++|.
T Consensus       278 ~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~  344 (381)
T KOG1764|consen  278 RFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGV  344 (381)
T ss_pred             hhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCc
Confidence            999977665532 222211 11111222223356999999999999999999999999999999763

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.94  E-value=9.8e-09  Score=78.79  Aligned_cols=95  Identities=19%  Similarity=0.240  Sum_probs=75.0

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.+|++.|. ++.++++|. +++            ++.+|+||..|+.+....      .....++.++  
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~-d~~------------~~~~G~v~~~dl~~~~~~------~~~~~~v~~~--   61 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVV-DEE------------NKVLGQVTLSDLLEIGPN------DYETLKVCEV--   61 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEE-cCC------------CCEEEEEEHHHHHhhccc------cccccChhhe--
Confidence            477899999999999998 678899985 322            234699999999874211      1112456664  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      |..++.++++++++.+|+++|.+++.+.+||||++|.
T Consensus        62 ~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~   98 (111)
T cd04603          62 YIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGK   98 (111)
T ss_pred             eecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCe
Confidence            7778899999999999999999999999999998763

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.92  E-value=9.8e-09  Score=93.96  Aligned_cols=114  Identities=19%  Similarity=0.332  Sum_probs=89.1

Q ss_pred             HHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHH
Q 046022          124 LDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRF  202 (262)
Q Consensus       124 ~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~  202 (262)
                      +.+++..+|+++|... ++  +.++.+++++.+|++.|. .+...+||+ +++            ++.+|+||..|+.++
T Consensus       191 l~~~~~~~V~~im~~~-~~--~~~v~~~~sv~~a~~~~~~~~~~~~~Vv-d~~------------g~~iG~vt~~dl~~~  254 (321)
T PRK11543        191 LGARLLNKVHHLMRRD-DA--IPQVALTASVMDAMLELSRTGLGLVAVC-DAQ------------QQVQGVFTDGDLRRW  254 (321)
T ss_pred             HHHHHHhHHHHHhccC-CC--CcEeCCCCCHHHHHHHHHHcCCCEEEEE-cCC------------CcEEEEecHHHHHHH
Confidence            3345568999999842 12  578999999999999997 577789986 322            244699999999987


Q ss_pred             HHhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          203 MMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       203 L~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.....     ...++++  +|++++.++.+++++.+|++.|.++++..+||||++|.
T Consensus       255 ~~~~~~-----~~~~v~~--im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~  305 (321)
T PRK11543        255 LVGGGA-----LTTPVNE--AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGK  305 (321)
T ss_pred             HhCCCC-----cCCcHHH--hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCe
Confidence            754211     1345676  48889999999999999999999999999999998763

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.90  E-value=2.2e-08  Score=77.53  Aligned_cols=96  Identities=18%  Similarity=0.277  Sum_probs=76.2

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. ++...+||..+ +            ++.+|+||..||++.+....    .....++++  +
T Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~------------~~~~Givt~~dl~~~~~~~~----~~~~~~~~~--~   63 (118)
T cd04617           3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDE-D------------GDLVGVVSRKDLLKASIGGA----DLQKVPVGV--I   63 (118)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEEcC-C------------CCEEEEEEHHHHHHHHHcCC----CccCCCHHH--H
Confidence            478999999999999997 78889998532 2            23459999999999875421    112345665  3


Q ss_pred             cCc--CeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          224 LNE--NVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       224 ~~~--~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                      |.+  ++.++++++++.+|+++|.++++..+||||++|
T Consensus        64 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~  101 (118)
T cd04617          64 MTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVD  101 (118)
T ss_pred             hCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCC
Confidence            653  789999999999999999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.89  E-value=2.8e-08  Score=75.21  Aligned_cols=103  Identities=21%  Similarity=0.340  Sum_probs=81.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++.+++++.+|++.|.+++...+||++.+                      ++++|+++..|++....         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------~~~~g~v~~~~l~~~~~---------   50 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS----------------------GELVGIITRKDLLRNPE---------   50 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC----------------------CcEEEEEEHHHHHhccc---------
Confidence            56789999999999999999999999999864                      58999999999864210         


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                                ..++.++|..   .  +.++.+++++.+++..|. .+.+.+||..+ +  ++           .|+||..
T Consensus        51 ----------~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~--~~-----------~G~it~~  101 (106)
T cd04638          51 ----------EEQLALLMTR---D--PPTVSPDDDVKEAAKLMVENNIRRVPVVDD-G--KL-----------VGIVTVA  101 (106)
T ss_pred             ----------cchHHHHhcC---C--CceECCCCCHHHHHHHHHHcCCCEEEEEEC-C--EE-----------EEEEEHH
Confidence                      1145666652   2  477899999999999998 78889999632 1  23           4999999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      |+++
T Consensus       102 d~~~  105 (106)
T cd04638         102 DIVR  105 (106)
T ss_pred             Hhhc
Confidence            9875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.88  E-value=2.1e-08  Score=76.99  Aligned_cols=96  Identities=13%  Similarity=0.326  Sum_probs=76.2

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. ++.+.+||..++ .           ++.+|++|.+|+++++.....   .....++.++  
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~-----------~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~~--   65 (114)
T cd04630           3 VVTIDGLATVAEALQLMKEHGVSSLVVEKRR-E-----------SDAYGIVTMRDILKKVVAEGR---DPDRVNVYEI--   65 (114)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCEEEEEECC-C-----------CcEEEEEehHHHHHHHHhCCC---CCCccCHHHH--
Confidence            578999999999999998 688889985332 0           234599999999997755211   1123456764  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      |.+++.++++++++.+|+++|.+++...+||+|+
T Consensus        66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~   99 (114)
T cd04630          66 MTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN   99 (114)
T ss_pred             hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC
Confidence            7788999999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.88  E-value=1.3e-08  Score=93.43  Aligned_cols=107  Identities=18%  Similarity=0.231  Sum_probs=82.3

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..+|+++|.. .++  +.++.++++|.+|+++|. ++.+.+||+ +++            ++.+|+||..|+.+.+....
T Consensus       201 ~~~V~dim~~-~~~--~~~v~~~~sl~~a~~~~~~~~~~~~vVv-d~~------------g~lvGivt~~Dl~~~~~~~~  264 (326)
T PRK10892        201 LLRVSDIMHT-GDE--IPHVSKTASLRDALLEITRKNLGMTVIC-DDN------------MKIEGIFTDGDLRRVFDMGI  264 (326)
T ss_pred             cCcHHHHhCC-CCC--CeEECCCCCHHHHHHHHHhcCCCeEEEE-cCC------------CcEEEEEecHHHHHHHhcCC
Confidence            4579999972 113  688999999999999998 565555553 422            34569999999988554321


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                          ++...++++  +|++++.++.+++++.+|+++|.++++..+||+|+
T Consensus       265 ----~~~~~~v~~--im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~  308 (326)
T PRK10892        265 ----DLRQASIAD--VMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG  308 (326)
T ss_pred             ----CcccCCHHH--hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC
Confidence                123456777  48999999999999999999999999999999974

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.87  E-value=2.4e-08  Score=78.29  Aligned_cols=102  Identities=17%  Similarity=0.260  Sum_probs=75.6

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhc-------c
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITS-------H  216 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~-------~  216 (262)
                      +.++.+++++.++++.|. +++..+||+ ++.            ++.+|+||+.|++++......... ...       .
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~-d~~------------~~~~Giv~~~dl~~~~~~~~~~~~-~~~~~~~~~~~   68 (126)
T cd04642           3 VVSIDSDERVLDAFKLMRKNNISGLPVV-DEK------------GKLIGNISASDLKGLLLSPDDLLL-YRTITFKELSE   68 (126)
T ss_pred             eEEECCCccHHHHHHHHHHhCCCcccEE-CCC------------CcEEEEEEHHHhhhhhcCcchhhc-ccchhhhhhhh
Confidence            578999999999999888 688899995 322            234699999999997754321110 000       0


Q ss_pred             ccc-hhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          217 SIR-ELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       217 ti~-eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      .+. ....+.+++.++.+++++.+|+++|.+++++.+||||++|+
T Consensus        69 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~  113 (126)
T cd04642          69 KFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGK  113 (126)
T ss_pred             hcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCC
Confidence            011 12346678999999999999999999999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.87  E-value=5e-08  Score=75.09  Aligned_cols=112  Identities=13%  Similarity=0.202  Sum_probs=81.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCC-CceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANK-VVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS  117 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~-i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~  117 (262)
                      ++.++++++++.+|++.|.+++ +..+||+++ +                      +++|+++..|++..+....     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~----------------------~~~G~v~~~~l~~~~~~~~-----   53 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-G----------------------RPVGLIMREALMELLSTPY-----   53 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-C----------------------eeEEEEEHHHHHHHHhchh-----
Confidence            4557899999999999998887 899999986 4                      7999999999987654310     


Q ss_pred             CCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCe---eEeecCCCCcccccceecccCCeeeE
Q 046022          118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHR---ALVPMDSRMENISGVELVESASSYQM  193 (262)
Q Consensus       118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~r---v~V~~~~~~~~~~g~~~~~~~~~~gi  193 (262)
                           ........++.++|..   .  +..+.+++++.+++..|. .+.++   .+|+.++             +..+|+
T Consensus        54 -----~~~~~~~~~v~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~-------------~~~~Gv  110 (119)
T cd04598          54 -----GRALYGKKPVSEVMDP---D--PLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEE-------------GRYLGI  110 (119)
T ss_pred             -----hHHHHcCCcHHHhcCC---C--cEEecCCCCHHHHHHHHHcCCcccccccEEEeeC-------------CeEEEE
Confidence                 0001123478899862   2  578999999999999987 45433   3453322             234699


Q ss_pred             ecHHHHHH
Q 046022          194 LTQMDLLR  201 (262)
Q Consensus       194 ITqsDIir  201 (262)
                      ||..|+++
T Consensus       111 vs~~di~~  118 (119)
T cd04598         111 GTVKDLLR  118 (119)
T ss_pred             EEHHHHhc
Confidence            99999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.87  E-value=2.9e-08  Score=76.96  Aligned_cols=101  Identities=20%  Similarity=0.296  Sum_probs=77.7

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc-c-h----hhhccc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE-L-K----DITSHS  217 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~-l-~----~l~~~t  217 (262)
                      +.++.+++++.++++.|. ++.+++||. ++.            ++.+|+||+.|+++++...... + .    .....+
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~-~~~------------~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   70 (124)
T cd04600           4 VVTVTPDTSLEEAWALLRRHRIKALPVV-DGD------------RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPET   70 (124)
T ss_pred             cEEeCCCCCHHHHHHHHHHcCCceeeEE-CCC------------CCEEEEEEHHHHHhhhcccccchhhhhhhccccccc
Confidence            578999999999999998 678899985 322            2446999999999877543210 0 0    011234


Q ss_pred             cchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          218 IRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       218 i~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.+  ++.++++++++++++.+|++.|..++.+.+||+|++|.
T Consensus        71 i~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~  111 (124)
T cd04600          71 VGD--IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRR  111 (124)
T ss_pred             HHH--hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCC
Confidence            565  37788999999999999999999999999999998764

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.85  E-value=3.8e-08  Score=74.86  Aligned_cols=95  Identities=23%  Similarity=0.331  Sum_probs=77.0

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. .+..++||+ ++.            ++.+|+|++.|+.+++.....      ..++.+  +
T Consensus         3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~-~~~------------~~~~G~v~~~~l~~~~~~~~~------~~~v~~--~   61 (111)
T cd04639           3 FETLSPADTLDDAADALLATTQHEFPVV-DGD------------GHLVGLLTRDDLIRALAEGGP------DAPVRG--V   61 (111)
T ss_pred             ceEcCCCCcHHHHHHHHHHcCCCcceEE-CCC------------CcEEEEeeHHHHHHHHHhcCC------CCcHHH--H
Confidence            578999999999999987 577899985 322            244699999999998765321      235666  3


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.+++.++.+++++.+|++.|.+++...+||+|++|.
T Consensus        62 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~   98 (111)
T cd04639          62 MRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGR   98 (111)
T ss_pred             hcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCC
Confidence            6778999999999999999999999999999988664

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.85  E-value=3.3e-08  Score=75.63  Aligned_cols=99  Identities=13%  Similarity=0.239  Sum_probs=76.2

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc-chhhhccccchhc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE-LKDITSHSIRELG  222 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~-l~~l~~~ti~eL~  222 (262)
                      +.++.+++++.++++.|. ++++.+||. ++.            ++.+|++|..|+++++.+.... +..+...+++++ 
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~-d~~------------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~-   68 (116)
T cd04643           3 VAYVQDTNTLRHALLVLTKHGYSAIPVL-DKE------------GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDV-   68 (116)
T ss_pred             cEEECCCCcHHHHHHHHHHCCCceeeeE-CCC------------CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHH-
Confidence            578999999999999998 688899995 322            2346999999999988643211 111224567764 


Q ss_pred             ccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          223 ALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       223 ~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                       +.+++.++.+++++.+|+++|.+++  .+||+|++|.
T Consensus        69 -~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~  103 (116)
T cd04643          69 -MNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGI  103 (116)
T ss_pred             -hcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCe
Confidence             7788999999999999999998865  5999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.84  E-value=4.8e-08  Score=74.88  Aligned_cols=95  Identities=12%  Similarity=0.240  Sum_probs=73.6

Q ss_pred             eEEeCCCCCHHHHHHHHh-cC-CCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhc
Q 046022          145 LWTLSPNTSILDCMEVFS-KG-IHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELG  222 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g-~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~  222 (262)
                      +.++.+++++.+|++.|. ++ .+++||+ ++.            ++.+|++|..||+++.....      ...++.++ 
T Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~-d~~------------~~~~G~v~~~dl~~~~~~~~------~~~~v~~~-   62 (114)
T cd04801           3 FPTVPAHLTLREFVREYVLGSNQRRFVVV-DNE------------GRYVGIISLADLRAIPTSQW------AQTTVIQV-   62 (114)
T ss_pred             cceeCCCCCHHHHHHHHhccCCceeEEEE-cCC------------CcEEEEEEHHHHHHHHHhhc------cccchhhh-
Confidence            578999999999999886 44 7788885 322            24469999999998764321      13456663 


Q ss_pred             ccCc--CeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          223 ALNE--NVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       223 ~~~~--~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                       +.+  .+.++.+++++.+|++.|.+++.+.+||+|++|.
T Consensus        63 -~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~  101 (114)
T cd04801          63 -MTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQ  101 (114)
T ss_pred             -hcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCc
Confidence             553  3679999999999999999999999999998653

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.84  E-value=5.5e-08  Score=74.38  Aligned_cols=95  Identities=22%  Similarity=0.358  Sum_probs=75.8

Q ss_pred             EEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhccc
Q 046022          146 WTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGAL  224 (262)
Q Consensus       146 ~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~  224 (262)
                      .++.+++++.++++.|. .+.+.++|. +++            ++.+|++|.+|+++.+.....     ...++.+  ++
T Consensus         5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~-d~~------------~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~--~~   64 (113)
T cd04607           5 LLVSPDASILDALRKIDKNALRIVLVV-DEN------------GRLLGTVTDGDIRRALLKGLS-----LDDPVSE--VM   64 (113)
T ss_pred             eEECCCCCHHHHHHHHHhcCcCEEEEE-CCC------------CCEEEEEEcHHHHHHHhcCCC-----cCCCHHH--hh
Confidence            67899999999999998 577788885 322            234699999999987764321     1235666  47


Q ss_pred             CcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          225 NENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       225 ~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      .+++.++.+++++.+|+++|.+++.+.+||||++|.
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~  100 (113)
T cd04607          65 NRNPITAKVGSSREEILALMRERSIRHLPILDEEGR  100 (113)
T ss_pred             cCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCC
Confidence            778999999999999999999999999999998764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.81  E-value=8.8e-08  Score=72.68  Aligned_cols=93  Identities=19%  Similarity=0.301  Sum_probs=75.8

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. ++..+++|. ++.            ++..|++|+.|+++.+....        .++.++  
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d~~------------~~~~G~v~~~~l~~~~~~~~--------~~~~~~--   60 (110)
T cd04605           4 VVTISEDASIKEAAKLMIEENINHLPVV-DED------------GRLVGIVTSWDISKAVARDK--------KSVEDI--   60 (110)
T ss_pred             CEEECCCCCHHHHHHHHHhCCCceEEEE-CCC------------CcEEEEEeHHHHHHHHhhCc--------cCHHHh--
Confidence            578999999999999988 678899985 322            34469999999998765431        235553  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.+++.++.+++++.+|++.|.+++...+||++++|.
T Consensus        61 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~   97 (110)
T cd04605          61 MTRNVITATPDEPIDVAARKMERHNISALPVVDAENR   97 (110)
T ss_pred             cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCc
Confidence            6678999999999999999999999999999998764

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.80  E-value=1.1e-07  Score=72.40  Aligned_cols=96  Identities=19%  Similarity=0.341  Sum_probs=77.6

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +..+.+++++.++++.|. .+.+++||. +++            ++.+|+||+.|+++++.+...     ...++.+  +
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~-d~~------------~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~--~   62 (112)
T cd04624           3 VVTVDPDTSIREAAKLMAEENVGSVVVV-DPD------------ERPIGIVTERDIVRAVAAGID-----LDTPVSE--I   62 (112)
T ss_pred             CeEECCCCcHHHHHHHHHHcCCCEEEEE-CCC------------CCEEEEeeHHHHHHHHhccCC-----CccCHHH--h
Confidence            467899999999999887 688899995 322            234699999999998765321     1345665  4


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      |.+++.++.+++++.++++.|.+++.+.+||++++|.
T Consensus        63 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~   99 (112)
T cd04624          63 MTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGE   99 (112)
T ss_pred             ccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCc
Confidence            7788999999999999999999999999999998774

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.78  E-value=9.5e-08  Score=72.84  Aligned_cols=97  Identities=20%  Similarity=0.302  Sum_probs=76.3

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      ...+.+++++.++++.|. .+.+++||+.+ .            +..+|++|+.|+.+.+... +.   +...++.+  +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~------------~~~~G~v~~~dl~~~~~~~-~~---~~~~~i~~--~   63 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD-K------------KRLVGIITRYDVLSYALES-EE---LKDAKVRE--V   63 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcC-C------------CCEEEEEEHHHHHHhhhhh-hh---hcCCcHHH--h
Confidence            367899999999999888 57788998533 2            2346999999999865442 11   12345666  4


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.+++.++.+++++.++++.|.+++...+||+|++|.
T Consensus        64 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~  100 (113)
T cd04615          64 MNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGK  100 (113)
T ss_pred             ccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCe
Confidence            7778999999999999999999999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.77  E-value=9.2e-08  Score=73.15  Aligned_cols=94  Identities=23%  Similarity=0.428  Sum_probs=78.1

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.+|+..|. ++++++||. +..             +..|++|..|+++++........     ++.+  +
T Consensus         9 ~~~v~~~~~~~~a~~~m~~~~~~~~~v~-~~~-------------~l~Giit~~di~~~~~~~~~~~~-----~v~~--v   67 (117)
T COG0517           9 VITVKPDTSVRDALLLMSENGVSAVPVV-DDG-------------KLVGIITERDILRALAAGGKRLL-----PVKE--V   67 (117)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEe-eCC-------------EEEEEEEHHHHHHHHhccCCccc-----cHHH--h
Confidence            588999999999999999 789999995 321             23599999999999987542211     4555  4


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHh-CCCcEEEEEcCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRA-ALLHAVPIVKSSG  259 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~-~~isav~VVd~~g  259 (262)
                      |+++++++.++.++.+|++.|.+ ++++++||+++++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~  104 (117)
T COG0517          68 MTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDG  104 (117)
T ss_pred             ccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCC
Confidence            77799999999999999999999 7999999999885

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.77  E-value=5.2e-08  Score=86.76  Aligned_cols=108  Identities=17%  Similarity=0.249  Sum_probs=85.8

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..+|+++|..  .+  +.++.+++++.++++.|. .+...++|+ +++            ++.+|++|..|+++++....
T Consensus       154 ~~~v~~im~~--~~--~~~v~~~~~v~~a~~~~~~~~~~~~~Vv-d~~------------g~~~Givt~~dl~~~~~~~~  216 (268)
T TIGR00393       154 LVKVKDLMQT--TD--LPLIAPTTSFKDALLEMSEKRLGSAIVC-DEN------------NQLVGVFTDGDLRRALLGGG  216 (268)
T ss_pred             hhhHHHHhCC--CC--CCcCCCCCcHHHHHHHHhhcCCcEEEEE-eCC------------CCEEEEEEcHHHHHHHhcCC
Confidence            4689999973  22  367999999999999998 577888885 322            24469999999998764321


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                           -...+++++  |.+++.++.+++++.+|+++|.++++..+||+|++|.
T Consensus       217 -----~~~~~v~~i--m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~  262 (268)
T TIGR00393       217 -----SLKSEVRDF--MTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNK  262 (268)
T ss_pred             -----cccCcHHHh--CCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCe
Confidence                 124567774  8888999999999999999999999999999998774

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.76  E-value=1.3e-07  Score=71.65  Aligned_cols=94  Identities=22%  Similarity=0.398  Sum_probs=75.5

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. ++++++||. +++  ++           .|++++.|++++......      ..++.++  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~--~~-----------~G~v~~~~l~~~~~~~~~------~~~v~~~--   60 (110)
T cd04588           3 LITLNPNATLREAARLFNTHHIHGAPVV-DDG--KL-----------VGIVTLSDIAHAIARGLE------LAKVKDV--   60 (110)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCEEEEe-eCC--EE-----------EEEEEHHHHHHHHhcccc------ccCHHHH--
Confidence            577999999999999887 688899985 332  23           499999999997654321      1345653  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +..++.++.++.++.++++.|.+.+...+||++++|.
T Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~   97 (110)
T cd04588          61 MTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGR   97 (110)
T ss_pred             hcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCC
Confidence            6778999999999999999999999999999998764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.75  E-value=1.1e-07  Score=73.48  Aligned_cols=101  Identities=25%  Similarity=0.346  Sum_probs=78.4

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccch-----hhhcccc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELK-----DITSHSI  218 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~-----~l~~~ti  218 (262)
                      +.++.+++++.++++.|. .+++++||. ++.            ++.+|++|..||++++........     .....++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~-~~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v   69 (122)
T cd04803           3 VVTLSEDDSLADAEELMREHRIRHLPVV-NED------------GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPV   69 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCcccccEE-CCC------------CCEEEEEEHHHHHHHhccccccccccccccccCcCH
Confidence            577999999999999998 688899995 322            234699999999998765321100     1123455


Q ss_pred             chhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          219 RELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       219 ~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      .+  ++.+++.++.+++++.+|+++|.+++...+||+|++|.
T Consensus        70 ~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~  109 (122)
T cd04803          70 AE--VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGT  109 (122)
T ss_pred             HH--hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCC
Confidence            65  47788999999999999999999999999999998663

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.75  E-value=8.6e-08  Score=74.41  Aligned_cols=102  Identities=22%  Similarity=0.389  Sum_probs=78.3

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc-------chhhhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE-------LKDITSH  216 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~-------l~~l~~~  216 (262)
                      +.++.+++++.+++++|. .+.+.+||. +++.           ++.+|+|++.|+++++.+....       .......
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~-d~~~-----------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~   70 (125)
T cd04631           3 VVTVPPTTPIMEAAKIMVRNGFRRLPVV-DEGT-----------GKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINE   70 (125)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCcccceeE-eCCC-----------CEEEEEEEHHHHHHHhhccchhccccccccchhhhc
Confidence            567899999999999998 577789985 3221           2446999999999988653211       0012234


Q ss_pred             ccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          217 SIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       217 ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      ++.++  +.+++.++.+++++.++++.|.+.+...+||+|++|.
T Consensus        71 ~~~~~--~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~  112 (125)
T cd04631          71 PVRSI--MTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGK  112 (125)
T ss_pred             CHHHH--hcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCc
Confidence            56664  6778999999999999999999999999999998653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.75  E-value=1.1e-07  Score=72.36  Aligned_cols=93  Identities=16%  Similarity=0.288  Sum_probs=75.3

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. ++.+++||+.+ .            ++..|++|..|++++......     ...++.++  
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~------------~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~~--   62 (111)
T cd04626           3 FPTIDEDASIREALHEMLKYNTNEIIVKDN-E------------EKLKGVVTFTDILDLDLFESF-----LEKKVFNI--   62 (111)
T ss_pred             ceEECCCccHHHHHHHHHHhCCCeEEEEcC-C------------CCEEEEEehHHhHHHHhhccc-----ccCcHHHH--
Confidence            577999999999999887 68889999632 2            234599999999987644211     13467764  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      +.+++.++.+++++.+|++.|.+++...+||+|+
T Consensus        63 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   96 (111)
T cd04626          63 VSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD   96 (111)
T ss_pred             hcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC
Confidence            7788999999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.74  E-value=1.9e-07  Score=70.82  Aligned_cols=95  Identities=18%  Similarity=0.353  Sum_probs=76.0

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. .+.+++||..+ .            ++.+|++|..|+++++......   ....++.++  
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~-~------------~~~~Giv~~~~l~~~~~~~~~~---~~~~~~~~~--   64 (113)
T cd04623           3 VITVRPDATVAEAAKLMAEKNIGAVVVVDD-G------------GRLVGIFSERDIVRKVALRGAS---ALDTPVSEI--   64 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeEEEECC-C------------CCEEEEEehHHHHHHHhhcCCC---ccccCHHHh--
Confidence            467899999999999887 67889999532 2            2346999999999987653211   113456764  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      +.+++.++.++.++.+|++.|.+++.+.+||+++
T Consensus        65 ~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~   98 (113)
T cd04623          65 MTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG   98 (113)
T ss_pred             cCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC
Confidence            7778999999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.74  E-value=1.3e-07  Score=75.67  Aligned_cols=98  Identities=20%  Similarity=0.367  Sum_probs=76.1

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc--------------
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE--------------  209 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~--------------  209 (262)
                      +.++.+++++.+|++.|. .+...+||. ++.            +++.|++|+.|+++++......              
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~-d~~------------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~   69 (135)
T cd04621           3 IATVHPEHSLLHVVDEMEKNGVGRVIVV-DDN------------GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAG   69 (135)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCCCcceEE-CCC------------CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcc
Confidence            567999999999999998 577889995 432            3446999999999987532110              


Q ss_pred             -----chhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          210 -----LKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       210 -----l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                           .......+++++  +.+++.++.+++++.+|++.|.+++...+||+++
T Consensus        70 ~~~~~~~~~~~~~v~~~--~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~  120 (135)
T cd04621          70 QKRYRYVKEVPLVAEDI--MTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN  120 (135)
T ss_pred             cccccccccccccHHHh--cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence                 001123457764  7788999999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.74  E-value=8.5e-08  Score=73.12  Aligned_cols=96  Identities=18%  Similarity=0.309  Sum_probs=75.5

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. ++.+++||. ++.            ++.+|+||..|+++.+.+....  .....++.++  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~------------~~~~G~v~~~~l~~~~~~~~~~--~~~~~~v~~~--   65 (114)
T cd04629           3 PVTFTPDMSVTEAVEKLLKSKISGGPVV-DDN------------GNLVGFLSEQDCLKQLLESSYH--CDGVATVRDI--   65 (114)
T ss_pred             CeEeCCCCCHHHHHHHHHhcCCCCccEE-CCC------------CeEEEEeehHHHHHHhhhhhhc--cCCCccHHHH--
Confidence            577999999999999887 577888885 322            2346999999999987653211  1123456663  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      +.+++.++.+++++.+|++.|.+++.+.+||+|+
T Consensus        66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   99 (114)
T cd04629          66 MTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD   99 (114)
T ss_pred             hccCceEECCCCcHHHHHHHHHHhCCCccCEEEC
Confidence            7778899999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.73  E-value=8.2e-08  Score=76.09  Aligned_cols=100  Identities=20%  Similarity=0.311  Sum_probs=76.6

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc---------------
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS---------------  208 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~---------------  208 (262)
                      +.++.+++++.++++.|. .+.+++||+ ++.            ++.+|+||..|+++++.....               
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vv-d~~------------~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~   70 (135)
T cd04586           4 VVTVSPETSVAEAARLMLDNHISGLPVV-DDD------------GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEE   70 (135)
T ss_pred             CEEeCCCCCHHHHHHHHHHcCCCCceEE-CCC------------CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHH
Confidence            578999999999999988 688899996 422            234699999999987643210               


Q ss_pred             ---cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          209 ---ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       209 ---~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                         .+......++.++  +.+++.++.+++++.+|++.|.+++.+.+||+| +|.
T Consensus        71 ~~~~~~~~~~~~v~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~  122 (135)
T cd04586          71 LAAAFVRSHGRKVADV--MTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGR  122 (135)
T ss_pred             HHHHHHHhcCCCHHHH--hCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCE
Confidence               0001123456664  777899999999999999999999999999999 664

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.72  E-value=1.8e-07  Score=71.08  Aligned_cols=95  Identities=22%  Similarity=0.301  Sum_probs=74.7

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.+|++.|. .+...+||..++.            ++.+|++|..|+++++......      .++.++  
T Consensus         3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~------------~~~~G~v~~~~l~~~~~~~~~~------~~~~~~--   62 (111)
T cd04590           3 IVALDADDTLEEILELIAESGHSRFPVYDGDL------------DNIIGVVHVKDLLRALAEGEED------LDLRDL--   62 (111)
T ss_pred             eEEEcCCCCHHHHHHHHhhCCCceEEEECCCC------------ceEEEEEEHHHHHHHHHcCCCc------CCHHHH--
Confidence            678999999999999998 5778888853320            2446999999999987543211      234443  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      + +++.++.+++++.+|++.|.+++.+.+||+|++|.
T Consensus        63 ~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~   98 (111)
T cd04590          63 L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGG   98 (111)
T ss_pred             h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCC
Confidence            3 46889999999999999999999999999998774

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.72  E-value=1.8e-07  Score=71.13  Aligned_cols=97  Identities=24%  Similarity=0.326  Sum_probs=77.0

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. .+..+++|. +++            ++.+|+|+..++.+++......    ...++.++  
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-d~~------------~~~~G~v~~~~i~~~~~~~~~~----~~~~v~~~--   64 (114)
T cd04604           4 LPLVSPDTSLKDALLEMSRKGLGMTAVV-DED------------GRLVGIFTDGDLRRALEKGLDI----LTLPVADV--   64 (114)
T ss_pred             ccccCCCCcHHHHHHHHHhcCccEEEEE-cCC------------CCEEEEechHHHHHHHhccCcc----ccCCHHHh--
Confidence            467899999999999887 567788885 322            2446999999999988654321    12356664  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.+++.++.+++++.+|++.|..++...+||++++|.
T Consensus        65 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~  101 (114)
T cd04604          65 MTRNPKTIDPDALAAEALELMEENKITALPVVDDNGR  101 (114)
T ss_pred             hccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCC
Confidence            7778899999999999999999999999999997664

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.72  E-value=1.5e-07  Score=74.33  Aligned_cols=99  Identities=18%  Similarity=0.345  Sum_probs=76.3

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccch------------
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELK------------  211 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~------------  211 (262)
                      +.++.+++++.++++.|. .+++++||. +++            ++.+|++++.|+++++........            
T Consensus         3 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~-d~~------------~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   69 (132)
T cd04636           3 VITVKKDDTLRDVVEILLTGKISGVPVV-DNE------------GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDE   69 (132)
T ss_pred             CeEeCCCCcHHHHHHHHHHhCCCccceE-CCC------------CCEEEEEeHHHHHHHHhccCCcccccccccccccch
Confidence            467999999999999987 688899995 322            234699999999998865422110            


Q ss_pred             ----hhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          212 ----DITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       212 ----~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                          .+...++.+  ++.+++..+.+++++.+|+++|.+.+...+||+|+ |
T Consensus        70 ~~~~~~~~~~v~~--~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~  118 (132)
T cd04636          70 SKIKKLLGKKVEE--IMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-G  118 (132)
T ss_pred             HHHHHHcCCCHHH--hccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-C
Confidence                011125555  36778999999999999999999999999999987 5

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.72  E-value=2e-07  Score=70.63  Aligned_cols=95  Identities=20%  Similarity=0.379  Sum_probs=76.8

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +..+.+++++.+++++|. .+.+.+||. ++  +           +.+|++|..|+.++......     ...++++.  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~~--~-----------~~~G~v~~~~l~~~~~~~~~-----~~~~v~~~--   61 (111)
T cd04611           3 ILTCPPDTSLAEAASRMRERRISSIVVV-DD--G-----------RPLGIVTERDILRLLASGPD-----LQTPVGEV--   61 (111)
T ss_pred             ceEECCCCcHHHHHHHHHHcCCCEEEEe-eC--C-----------EEEEEEeHHHHHHHHhcCCC-----CCcCHHHh--
Confidence            467899999999999998 577788885 33  2           23599999999998865321     23456663  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.++++++.+++++.+|++.|.+.+...+||+|++|.
T Consensus        62 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~   98 (111)
T cd04611          62 MSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGE   98 (111)
T ss_pred             cCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCc
Confidence            7778999999999999999999999999999998764

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.72  E-value=2.1e-07  Score=85.92  Aligned_cols=144  Identities=15%  Similarity=0.223  Sum_probs=109.1

Q ss_pred             cccCCcchHHHHH--hhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccc
Q 046022           11 SSAGKHAADENQR--LLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQT   88 (262)
Q Consensus        11 ~~~~~~~~~~~~~--~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~   88 (262)
                      .+..|...+.+.+  .|.+++|+|+|.....+..++.|++.++.++.+...-..++|+|..+-                 
T Consensus       181 ~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~-----------------  243 (423)
T COG4536         181 GSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL-----------------  243 (423)
T ss_pred             cccccccHHHHhcccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCCh-----------------
Confidence            3444545566654  358899999999989999999999999999999999999999997542                 


Q ss_pred             cCcCCeEEEEEeHHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCee
Q 046022           89 GAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRA  168 (262)
Q Consensus        89 ~~~~~~~vGivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv  168 (262)
                          +.++|++-.+|+++.+.+.+++.          +   ..+..+..    .  +|.+...++|.+-+..|.++-.|+
T Consensus       244 ----DnIiGvlh~r~llr~l~e~~~~~----------k---~d~~~~a~----e--pyFVPe~Tpl~~QL~~F~~~k~hi  300 (423)
T COG4536         244 ----DNIIGVLHVRDLLRLLNEKNEFT----------K---EDILRAAD----E--PYFVPEGTPLSDQLVAFQRNKKHI  300 (423)
T ss_pred             ----hHhhhhhhHHHHHHHhhccCccc----------H---hHHHHHhc----C--CeecCCCCcHHHHHHHHHHhcceE
Confidence                56999999999999999744321          0   11222222    2  588999999999999998555666


Q ss_pred             EeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022          169 LVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       169 ~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                      .++.|+            .|...|++|-+||+.-+...
T Consensus       301 alVVDE------------YG~i~GLVTLEDIlEEIVGd  326 (423)
T COG4536         301 ALVVDE------------YGDIQGLVTLEDILEEIVGD  326 (423)
T ss_pred             EEEEec------------cCcEEeeeeHHHHHHHHhcc
Confidence            554452            34556999999999866544

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.71  E-value=1.6e-07  Score=71.35  Aligned_cols=96  Identities=13%  Similarity=0.209  Sum_probs=76.2

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. .+..++||. +++            ++..|++|..|+.+++.... ..   ...++.+  +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~------------~~~~G~v~~~~l~~~~~~~~-~~---~~~~v~~--~   63 (114)
T cd04613           3 VVTIPEDTPLNELLDVIAHSPENNFPVV-DDD------------GRLVGIVSLDDIREILFDPS-LY---DLVVASD--I   63 (114)
T ss_pred             ceeeCCCCcHHHHHHHHHhCCCcceeEE-CCC------------CCEEEEEEHHHHHHHHhccc-cc---ccEEHHH--h
Confidence            567999999999999998 577889985 432            23459999999998775421 11   1245666  4


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC-CC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS-SG  259 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~-~g  259 (262)
                      +++++.++.+++++.+|++.|...+.+.+||+|+ .|
T Consensus        64 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~  100 (114)
T cd04613          64 MTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPG  100 (114)
T ss_pred             ccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCC
Confidence            7888999999999999999999999999999987 54

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.71  E-value=2.3e-07  Score=71.02  Aligned_cols=96  Identities=21%  Similarity=0.422  Sum_probs=73.4

Q ss_pred             eEEeCCCCCHHHHHHHHh-cC-CCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhc
Q 046022          145 LWTLSPNTSILDCMEVFS-KG-IHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELG  222 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g-~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~  222 (262)
                      +.++.++.++.++++.|. ++ ...++|. ++             ++..|++|..|+++++.....    ....++.+  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~-------------~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~--   62 (115)
T cd04620           3 PLTVTPDTPVADAIALMSQQGDSSCVLVV-EK-------------GRLLGIFTERDIVRLTAIGKD----LSDLPIGE--   62 (115)
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCCceEEEc-CC-------------CcEEEEEeHHHHHHHHhcCCC----ccccCHHH--
Confidence            467899999999999997 56 4456663 32             233599999999987754321    12345666  


Q ss_pred             ccCcCeEEEeCC--CcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          223 ALNENVFAITES--TKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       223 ~~~~~v~tv~~~--~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      ++.+++.++.++  +++.+|+++|.+++...+||+|++|.
T Consensus        63 ~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~  102 (115)
T cd04620          63 VMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQ  102 (115)
T ss_pred             hcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCC
Confidence            477788899887  78999999999999999999998774

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.71  E-value=1.7e-07  Score=71.37  Aligned_cols=97  Identities=23%  Similarity=0.351  Sum_probs=76.1

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. ++.++++|. ++  +           +.+|+||..|+++.+... + ... ...++.++  
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~-~~--~-----------~~~G~v~~~dl~~~~~~~-~-~~~-~~~~v~~i--   63 (113)
T cd04587           3 PATVSPTTTVQEAAKLMREKRVSCVLVM-DG--N-----------KLVGIFTSKDIALRVVAQ-G-LDP-ESTLVERV--   63 (113)
T ss_pred             CeEeCCCCCHHHHHHHHHHcCCCeEEEE-EC--C-----------EEEEEEEhHHHHHHHHhc-C-CCc-CcCCHHHh--
Confidence            567899999999999987 677889885 32  2           235999999999766543 1 111 12457764  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.+++.++.+++++.+|++.|.+++...+||++++|.
T Consensus        64 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~  100 (113)
T cd04587          64 MTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQ  100 (113)
T ss_pred             cCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCC
Confidence            7788999999999999999999999999999998764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.71  E-value=1.6e-07  Score=70.75  Aligned_cols=90  Identities=13%  Similarity=0.163  Sum_probs=72.1

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.+|++.|. ++.++++|. ++.            ++.+|++|..||++...           .++.+  +
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~-d~~------------g~~~Giv~~~dl~~~~~-----------~~~~~--~   56 (106)
T cd04582           3 PITVRPDDPLSDALGLMDDSDLRALTVV-DAD------------GQPLGFVTRREAARASG-----------GCCGD--H   56 (106)
T ss_pred             CcEecCCCcHHHHHHHHHhcCCCEEEEE-CCC------------CCEEEEEeHHHHHHhcc-----------cchhh--h
Confidence            467899999999999887 577888885 322            34469999999987421           13455  3


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.+.+.++.+++++.+|+++|.+++++.+||+|++|.
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~   93 (106)
T cd04582          57 AEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGR   93 (106)
T ss_pred             cccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCc
Confidence            6777888999999999999999999999999998764

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=98.71  E-value=7.4e-08  Score=91.54  Aligned_cols=107  Identities=20%  Similarity=0.279  Sum_probs=85.4

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      +.+|+++|++ ..+  +.+++.++++.++++.|. +|..|+||. +++.+++           +|||+..|+++++..  
T Consensus       190 ~~~v~diMtp-r~~--v~~l~~~~~~~e~~~~~~~~~~sR~PV~-~~~~d~i-----------vGiv~~kDll~~~~~--  252 (408)
T TIGR03520       190 NTDTKQVMRP-RLD--IFALDIETSFSEIIPKIIENGYSRIPVY-KETIDNI-----------TGVLYIKDLLPHLNK--  252 (408)
T ss_pred             CCEeeeeCCc-hHh--EEEEECCCCHHHHHHHHHhCCCCEEEEE-cCCCCce-----------EEEEEHHHHHhHhcc--
Confidence            6789999983 223  789999999999999988 799999995 4333344           599999999987642  


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGAT  261 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~~  261 (262)
                      +      ...++++  + +++.+|++++++.++++.|.+++..-.+|||+.|.+
T Consensus       253 ~------~~~l~~~--~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~  297 (408)
T TIGR03520       253 K------NFDWQSL--L-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGT  297 (408)
T ss_pred             C------CCCHHHH--c-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCE
Confidence            1      1234542  4 468899999999999999999999999999998864

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.71  E-value=1.6e-07  Score=71.32  Aligned_cols=91  Identities=18%  Similarity=0.214  Sum_probs=74.0

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. .+.+.+||. ++.            ++..|+|++.|+.+..          ...+++++  
T Consensus         4 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~-d~~------------~~~~G~v~~~~l~~~~----------~~~~v~~~--   58 (108)
T cd04596           4 TGYLTTTDTVKDWHELNKETGHSRFPVV-DEK------------NKVVGIVTSKDVAGKD----------PDTTIEKV--   58 (108)
T ss_pred             cEEeCCCCCHHHHHHHHHHcCCCceeEE-CCC------------CeEEEEecHHHHhccc----------ccccHHHH--
Confidence            578999999999999998 577788885 422            2346999999997531          13456664  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.+++.++.+++++.+|+++|.+++...+||+|++|.
T Consensus        59 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~   95 (108)
T cd04596          59 MTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKK   95 (108)
T ss_pred             hcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCC
Confidence            7778999999999999999999999999999998764

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.71  E-value=1.2e-07  Score=71.29  Aligned_cols=80  Identities=18%  Similarity=0.255  Sum_probs=67.3

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.+|++.|. +++..+||. +++            ++.+|++|.+|+.+..                    
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~-d~~------------~~~~Giv~~~dl~~~~--------------------   49 (96)
T cd04614           3 VPTVWEETPLPVAVRIMELANVKALPVL-DDD------------GKLSGIITERDLIAKS--------------------   49 (96)
T ss_pred             ccEeCCCCcHHHHHHHHHHcCCCeEEEE-CCC------------CCEEEEEEHHHHhcCC--------------------
Confidence            578999999999999998 688899995 322            2346999999998732                    


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                         .+.++.+++++.+|+++|.++++..+||+|++|.
T Consensus        50 ---~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~   83 (96)
T cd04614          50 ---EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDK   83 (96)
T ss_pred             ---CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCc
Confidence               1789999999999999999999999999998653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.70  E-value=1.6e-07  Score=72.60  Aligned_cols=101  Identities=15%  Similarity=0.239  Sum_probs=76.8

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc-ch----hhhcccc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE-LK----DITSHSI  218 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~-l~----~l~~~ti  218 (262)
                      +.++.+++++.++++.|. .+.+++||+ ++.            +..+|+++..|+++........ -.    .....++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   69 (122)
T cd04635           3 PVTCTPDDPVSKVWDLMLESGFTGLPVV-QKA------------GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTV   69 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCCCcccEE-CCC------------CcEEEEEEcHHHHhhccccccccchhhhhhhccCcH
Confidence            578999999999999998 678899996 422            2446999999999864322100 00    0123456


Q ss_pred             chhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          219 RELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       219 ~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      .+  ++.+++.++.+++++.+|+..|.+++.+.+||+|++|.
T Consensus        70 ~~--~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~  109 (122)
T cd04635          70 EK--IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQ  109 (122)
T ss_pred             HH--HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCc
Confidence            65  36778999999999999999999999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.70  E-value=2.4e-07  Score=71.03  Aligned_cols=95  Identities=20%  Similarity=0.238  Sum_probs=75.3

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +..+.+++++.++++.|. .+.++++|. ++.            ++.+|++|..|+.+.+.+...    ....++.+  +
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~-d~~------------~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~--~   63 (115)
T cd04593           3 PPVLSATTPLREAAEQLIESKHGSALVV-DRD------------GGVVGIITLPDLLRALEADEA----GEPSAVDE--V   63 (115)
T ss_pred             CcEeCCCCCHHHHHHHHHhCCCcEEEEE-cCC------------CCEEEEEEHHHHHHHHhcccc----cccccHHH--h
Confidence            467899999999999998 578899985 322            234699999999987754321    01223555  3


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSS  258 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~  258 (262)
                      +.+++.++.+++++.+|+++|.+++...+||+|++
T Consensus        64 ~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~   98 (115)
T cd04593          64 ATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRG   98 (115)
T ss_pred             ccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCC
Confidence            77889999999999999999999999999999887

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.69  E-value=7.8e-08  Score=93.47  Aligned_cols=109  Identities=16%  Similarity=0.204  Sum_probs=81.4

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      ..|+++|.....+  ..++.|++++.+|+++|. ++...+||+.++.          ++++++||||..||.+..     
T Consensus        94 ~kVk~~~~g~i~~--~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~----------~~gkLvGIVT~~DLr~~~-----  156 (502)
T PRK07107         94 RRVKNYKAGFVVS--DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGT----------AHGKLLGIVTSRDYRISR-----  156 (502)
T ss_pred             HHHHHHhcCCcCC--CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCC----------cCCEEEEEEEcHHhhccc-----
Confidence            3466666411112  257999999999999998 6888999964321          123456999999985321     


Q ss_pred             cchhhhccccchhcccCc--CeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          209 ELKDITSHSIRELGALNE--NVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       209 ~l~~l~~~ti~eL~~~~~--~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                         ...+.++++  +|++  +++++++++++.+|+++|.++++..+||||++|.
T Consensus       157 ---~~~~~~V~d--IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~  205 (502)
T PRK07107        157 ---MSLDTKVKD--FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGN  205 (502)
T ss_pred             ---cCCCCCHHH--HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCe
Confidence               123567887  4885  7999999999999999999999999999998763

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.69  E-value=2.1e-07  Score=71.99  Aligned_cols=100  Identities=17%  Similarity=0.310  Sum_probs=77.2

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccc----hh--hhccc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASEL----KD--ITSHS  217 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l----~~--l~~~t  217 (262)
                      +.++.+++++.++++.|. .++.++||. ++  ++           .+|++|+.|+.+.+.......    .+  ....+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d~--~~-----------~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   68 (122)
T cd04637           3 VVTVEMDDRLEEVREIFEKHKFHHLLVV-ED--NE-----------LVGVISDRDYLKAISPFLGTAGETEKDLATLNRR   68 (122)
T ss_pred             ceEeCCCCCHHHHHHHHHhCCCCEEEEE-eC--Ce-----------EEEEEEHHHHHHHHHHHhccccchHHHHHHHHhH
Confidence            578999999999999988 688899996 32  22           359999999999776422110    00  11234


Q ss_pred             cchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          218 IRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       218 i~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.+  ++.++++++.+++++.+|++.|.+++...+||+|++|+
T Consensus        69 ~~~--~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~  109 (122)
T cd04637          69 AHQ--IMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQ  109 (122)
T ss_pred             HHH--hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCC
Confidence            565  37788999999999999999999999999999988764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.69  E-value=3.1e-07  Score=69.25  Aligned_cols=92  Identities=17%  Similarity=0.309  Sum_probs=74.4

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +..+.+++++.++++.|. .+..+++|. ++.            ++.+|++|..|++++....         .++.+  +
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~-d~~------------~~~~G~v~~~dl~~~~~~~---------~~v~~--~   59 (109)
T cd04583           4 PVTITPDRTLAEAIKLMRDKKVDSLLVV-DKD------------NKLLGIVSLESLEQAYKEA---------KSLED--I   59 (109)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCceEEEE-cCC------------CcEEEEEEHHHHHHHhhcC---------CcHhH--h
Confidence            467899999999999998 578899985 322            2346999999998865321         24555  3


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      |.+.+.++++++++.+|+..|.+++...+||++++|+
T Consensus        60 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~   96 (109)
T cd04583          60 MLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGK   96 (109)
T ss_pred             hcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCe
Confidence            6778899999999999999999999999999998774

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.68  E-value=2.2e-07  Score=70.52  Aligned_cols=93  Identities=20%  Similarity=0.296  Sum_probs=74.4

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. .+.+++||. ++  ++           ..|+++..|+++++... +..   ...++.++  
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~-~~--~~-----------~~G~v~~~~l~~~~~~~-~~~---~~~~i~~~--   62 (111)
T cd04800           3 PVTCSPDTTIREAARLMTEHRVSSLLVV-DD--GR-----------LVGIVTDRDLRNRVVAE-GLD---PDTPVSEV--   62 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeEEEE-EC--CE-----------EEEEEEhHHHHHHHhcc-CCC---ccCCHHHH--
Confidence            577999999999999987 578899985 33  22           35999999999876543 111   12456663  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      +.+++.++++++++.+|++.|.+++.+.+||+++
T Consensus        63 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   96 (111)
T cd04800          63 MTAPPITIPPDATVFEALLLMLERGIHHLPVVDD   96 (111)
T ss_pred             hCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC
Confidence            7778999999999999999999999999999987

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.66  E-value=4e-07  Score=67.93  Aligned_cols=97  Identities=20%  Similarity=0.357  Sum_probs=75.8

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. .+.+++||. +++            ++.+|+++..|+++++........    ..+.+  +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~------------~~~~G~v~~~~l~~~~~~~~~~~~----~~~~~--~   63 (113)
T cd02205           3 VVTVSPDDTVAEALRLMLEHGISGLPVV-DDD------------GRLVGIVTERDLLRALAEGGLDPL----VTVGD--V   63 (113)
T ss_pred             ceEecCCCCHHHHHHHHHhcCCceEEEE-CCC------------CCEEEEEeHHHHHHHHHhccCCcc----ccHHH--H
Confidence            567899999999999988 577889885 322            244699999999998876432110    01333  3


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +..++.++.+++++.+|++.|.+.+.+.+||+|++|.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~  100 (113)
T cd02205          64 MTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGR  100 (113)
T ss_pred             hcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCc
Confidence            6678999999999999999999999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.66  E-value=1.9e-07  Score=72.05  Aligned_cols=97  Identities=18%  Similarity=0.263  Sum_probs=75.3

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc------chhhhccc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE------LKDITSHS  217 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~------l~~l~~~t  217 (262)
                      +.++.+++++.++++.|. ++.+++||. ++  +           +.+|++|+.|+++++......      ..++...+
T Consensus         3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~-~~--~-----------~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   68 (121)
T cd04633           3 VITVSPDDRVSHARRLMLDHDISRLPVI-EG--G-----------KLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLP   68 (121)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeeEEE-EC--C-----------EEEEEEchHHHHHhhhhhhhcccchhhhhhhhccC
Confidence            578999999999999887 688899995 32  1           335999999999877542211      01122345


Q ss_pred             cchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          218 IRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       218 i~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      +.+  ++.+++.++.+++++.+|+++|.+.+.+.+||+|+
T Consensus        69 ~~~--~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~  106 (121)
T cd04633          69 VSD--IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD  106 (121)
T ss_pred             HHH--HccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC
Confidence            555  37778999999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.65  E-value=3.7e-07  Score=69.07  Aligned_cols=95  Identities=15%  Similarity=0.196  Sum_probs=74.5

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +..+.+++++.++++.|. .+.+++||. ++  ++           .+|+++..|+.+......  ..   ..++.+  +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~--~~-----------~~G~v~~~dl~~~~~~~~--~~---~~~~~~--~   61 (111)
T cd04612           3 VVTVPVDLTVDEVLALMFGERHRGYPVV-DD--GR-----------LVGIVTLADIRRVPAEGR--EA---TVLVGD--V   61 (111)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCCCcceEe-eC--Ce-----------EEEEEEHHHHHHHHhcCc--cc---ccCHHH--h
Confidence            577999999999999988 678889885 33  22           359999999988664321  10   123444  3


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.+++.++.+++++.++++.|.+++...+||+|++|.
T Consensus        62 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~   98 (111)
T cd04612          62 MTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGR   98 (111)
T ss_pred             ccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCC
Confidence            7788999999999999999999999999999988654

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.63  E-value=5.9e-07  Score=68.27  Aligned_cols=95  Identities=18%  Similarity=0.367  Sum_probs=74.8

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. .+.+.+||. +++  ++           +|++|..|+++++......   ....++.++  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~--~~-----------~G~v~~~dl~~~~~~~~~~---~~~~~~~~~--   63 (112)
T cd04802           3 VITVDPDTTVYEAANIMTENNIGRLIVV-DNE--KP-----------VGIITERDLVKKVVSRNLK---PREVPVGEV--   63 (112)
T ss_pred             cEEECCCCCHHHHHHHHHHCCCCEEEEE-ECC--EE-----------EEEEEHHHHHHHHhhccCC---cccCCHHHh--
Confidence            467899999999999988 577889985 322  23           4999999999977543110   123456664  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSS  258 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~  258 (262)
                      +.+++.++.+++++.+|++.|.+++...+||||++
T Consensus        64 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~   98 (112)
T cd04802          64 MSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD   98 (112)
T ss_pred             cCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC
Confidence            77789999999999999999999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.63  E-value=3.6e-07  Score=70.07  Aligned_cols=100  Identities=19%  Similarity=0.351  Sum_probs=76.5

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchh------hhccc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKD------ITSHS  217 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~------l~~~t  217 (262)
                      +.++.+++++.++++.|. .+...+||. ++  +++           +|++|..|+.++..........      ....+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~-d~--~~~-----------~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   68 (122)
T cd04585           3 PITVTPDTSLMEALKLMKENSIRRLPVV-DR--GKL-----------VGIVTDRDLKLASPSKATTLDIWELYYLLSKIK   68 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHhCCcceeeEe-cC--CeE-----------EEEEeHHHHHHhhhcccccccchhhhhhhcccC
Confidence            467899999999999988 577899995 43  233           4999999999887542211110      11234


Q ss_pred             cchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          218 IRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       218 i~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.+  ++.+++.++.+++++.++++.|.+++.+.+||+|++|.
T Consensus        69 ~~~--~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~  109 (122)
T cd04585          69 VSD--IMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGR  109 (122)
T ss_pred             HHH--hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCc
Confidence            555  47778999999999999999999999999999998664

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.62  E-value=6.8e-07  Score=69.90  Aligned_cols=98  Identities=19%  Similarity=0.284  Sum_probs=75.1

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc--c-------chhhh
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS--E-------LKDIT  214 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~--~-------l~~l~  214 (262)
                      +..+.+++++.+|+++|. .+.+.+||+.++             ++..|+||..|+.+++.....  .       .....
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-------------~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~   69 (128)
T cd04632           3 VITVREDDSVGKAINVLREHGISRLPVVDDN-------------GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERML   69 (128)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-------------CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhc
Confidence            567899999999999998 688899995332             234599999999987643210  0       11123


Q ss_pred             ccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          215 SHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       215 ~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      ..++.+  ++.++++++.++.++.+|++.|.+++...+||++.
T Consensus        70 ~~~~~~--~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~  110 (128)
T cd04632          70 DLPVYD--AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTP  110 (128)
T ss_pred             cCcHHH--HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEecc
Confidence            345666  48888999999999999999999999999999953

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.60  E-value=5.1e-07  Score=68.53  Aligned_cols=92  Identities=15%  Similarity=0.278  Sum_probs=74.1

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.++.++.++++.|. ++..++||. +++             ..+|+++..|+.+.+....      ...++.++  
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d~~-------------~~~G~v~~~dl~~~~~~~~------~~~~~~~~--   61 (110)
T cd04595           4 VKTVRPEATIEEARELLLRYGHTALPVV-EGG-------------RVVGIISRRDVEKALRHGL------GHAPVKDY--   61 (110)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCCCeeeEe-eCC-------------EEEEEEEHHHHHHHHhccc------ccCcHHHH--
Confidence            578899999999999998 577789985 331             2359999999988763321      24566764  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                      +.+++.++.+++++.+|+.+|.+++...+||++ +|
T Consensus        62 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~   96 (110)
T cd04595          62 MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DG   96 (110)
T ss_pred             hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CC
Confidence            778899999999999999999999999999998 44

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.60  E-value=6.4e-07  Score=68.10  Aligned_cols=94  Identities=15%  Similarity=0.342  Sum_probs=73.1

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. .+.+.++|. ++             ++.+|++|..|+++++......   ....++.++  
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~-~~-------------~~~~G~v~~~dl~~~~~~~~~~---~~~~~v~~~--   63 (112)
T cd04625           3 IYTVAPETLLSEAVATMAEQDLGSLVVM-ER-------------GELVGLLTFREVLQAMAQHGAG---VLDTTVRAI--   63 (112)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeEEEe-eC-------------CEEEEEEEHHHHHHHHHhcCCc---hhcCCHHHH--
Confidence            467999999999999987 466666663 32             2345999999999987653111   123457764  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      +++++.++.+++++.+|+++|.+++...+||+|+
T Consensus        64 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~   97 (112)
T cd04625          64 MNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG   97 (112)
T ss_pred             hCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC
Confidence            7778899999999999999999999999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.60  E-value=2.5e-07  Score=91.45  Aligned_cols=107  Identities=16%  Similarity=0.188  Sum_probs=84.6

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..+|+++|..   +  +.++++++++.++++.|. ++.+.+||+ |++            ++..|+||..|+.+.+....
T Consensus       446 ~~~V~dim~~---~--~~~v~~~~tl~ea~~~l~~~~~~~~~Vv-D~~------------g~lvGiVt~~dL~~~l~~~~  507 (574)
T PRK01862        446 TTQMRELIQP---A--QTVVPPTASVADMTRVFLEYPVKYLYVV-DDD------------GRFRGAVALKDITSDLLDKR  507 (574)
T ss_pred             hCcHHHHhcC---C--CceeCCCCCHHHHHHHHHhCCCceEEEE-cCC------------CeEEEEEEHHHHHHHhhccc
Confidence            4689999973   2  467999999999999988 678889986 322            23459999999998664432


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                      +    ....++.+  +|++++.++++++++.+|+++|.+++...+||||++|
T Consensus       508 ~----~~~~~v~d--im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~  553 (574)
T PRK01862        508 D----TTDKTAAD--YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEA  553 (574)
T ss_pred             c----cccchHHH--hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCC
Confidence            1    11245666  4888899999999999999999999999999999875

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.60  E-value=2.5e-07  Score=84.23  Aligned_cols=108  Identities=23%  Similarity=0.336  Sum_probs=83.4

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..+|+++|..  +.. +.++.+++++.++++.|. .+..|+||. ++..++           ++|+|+-.|+++++....
T Consensus        66 ~~~V~diMtp--r~~-i~~l~~~~sl~e~~~~i~~~~~sr~PV~-~~~~d~-----------iiGiv~~kDll~~~~~~~  130 (292)
T PRK15094         66 DQRVRDIMIP--RSQ-MITLKRNQTLDECLDVIIESAHSRFPVI-SEDKDH-----------IEGILMAKDLLPFMRSDA  130 (292)
T ss_pred             CCEEeEEccc--hHH-EEEEeCCCCHHHHHHHHHhcCCcEEEEe-cCCCCc-----------EEEEEEHHHHHhHhhccC
Confidence            4589999972  222 789999999999999887 688999996 433223           359999999998764211


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      .      ..++.++  +. +++++.+++++.+|++.|.+++...++|||+.|.
T Consensus       131 ~------~~~l~~l--~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~  174 (292)
T PRK15094        131 E------AFSMDKV--LR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGG  174 (292)
T ss_pred             C------cCCHHHH--cC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCC
Confidence            1      1235553  54 4568999999999999999999999999998775

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.59  E-value=7.1e-07  Score=67.85  Aligned_cols=96  Identities=19%  Similarity=0.369  Sum_probs=74.3

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHH-HHHHhhcccchhhhccccchhc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLL-RFMMNHASELKDITSHSIRELG  222 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIi-r~L~~~~~~l~~l~~~ti~eL~  222 (262)
                      +.++.+++++.+|++.|. ++.+.+||. ++  ++           ..|++|..|++ +.+.....    ....++.++ 
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~-~~--~~-----------~~G~i~~~~l~~~~~~~~~~----~~~~~~~~~-   63 (113)
T cd04622           3 VVTVSPDDTIREAARLMREHDVGALPVC-EN--DR-----------LVGIVTDRDIVVRAVAEGRD----PDTTTVGDV-   63 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEe-eC--CE-----------EEEEEEhHHHHHHHhhccCC----cccCCHHHh-
Confidence            577999999999999998 678889985 33  22           35999999997 34433211    112246664 


Q ss_pred             ccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          223 ALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       223 ~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                       |.+.+.++.+++++.+|++.|..++...+||+|++|.
T Consensus        64 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~  100 (113)
T cd04622          64 -MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGR  100 (113)
T ss_pred             -ccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCc
Confidence             7778999999999999999999999999999987664

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.55  E-value=9.8e-07  Score=67.89  Aligned_cols=98  Identities=20%  Similarity=0.316  Sum_probs=75.3

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccc-----hhhhcccc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASEL-----KDITSHSI  218 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l-----~~l~~~ti  218 (262)
                      +.++.+++++.+|++.|. .+..++||. +++            ++.+|++++.|++++........     ......++
T Consensus         3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~-d~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v   69 (121)
T cd04584           3 VVTITPTTTIAEALELMREHKIRHLPVV-DEE------------GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPV   69 (121)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCcccEE-CCC------------CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCH
Confidence            577899999999999988 577788885 332            23469999999998765432111     01223456


Q ss_pred             chhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          219 RELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       219 ~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      .++  +.+++.++.+++++.+|++.|.+.+...+||+|+
T Consensus        70 ~~~--~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~  106 (121)
T cd04584          70 KEI--MTKDVITVHPLDTVEEAALLMREHRIGCLPVVED  106 (121)
T ss_pred             HHH--hhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC
Confidence            664  7778999999999999999999999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.54  E-value=3.1e-07  Score=72.30  Aligned_cols=97  Identities=14%  Similarity=0.176  Sum_probs=75.8

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. +++.++||. +++            +..+|+||..|+++.+......    ...+++++  
T Consensus         4 ~~~v~~~~~v~~a~~~m~~~~~~~~~Vv-d~~------------~~~~Gii~~~dl~~~~~~~~~~----~~~~v~~i--   64 (124)
T cd04608           4 PVTVLPTVTCAEAIEILKEKGFDQLPVV-DES------------GKILGMVTLGNLLSSLSSGKVQ----PSDPVSKA--   64 (124)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEE-cCC------------CCEEEEEEHHHHHHHHHHhccC----CCCcHHHH--
Confidence            578999999999999998 688899995 322            2345999999999877653211    24578874  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHH---------hCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMR---------AALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~---------~~~isav~VVd~~g~  260 (262)
                      |++++.++++++++.+|.++|.         +.+..++||+|++|.
T Consensus        65 m~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  110 (124)
T cd04608          65 LYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEK  110 (124)
T ss_pred             hhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccc
Confidence            9999999999999999999653         336788999987664

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.53  E-value=1.4e-06  Score=66.14  Aligned_cols=93  Identities=19%  Similarity=0.266  Sum_probs=73.5

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. ++...++|. +++  +           ..|+++..|+++.+.....    ....++.++  
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~-d~~--~-----------~~G~v~~~~l~~~~~~~~~----~~~~~i~~~--   62 (111)
T cd04589           3 PLIVDASTSIRDAARLMREHGADALLVR-DGD--P-----------RLGIVTRTDLLDAVLLDGL----PSSTPVGEI--   62 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEe-cCC--e-----------EEEEEEHHHHHHHHHcCCC----CCCCCHHHH--
Confidence            467899999999999998 577788885 331  2           3599999999987653211    123456764  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      +.+++.++++++++.+++++|.+++...+||+|+
T Consensus        63 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   96 (111)
T cd04589          63 ATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG   96 (111)
T ss_pred             hCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC
Confidence            7788999999999999999999999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.53  E-value=3.7e-07  Score=88.05  Aligned_cols=107  Identities=17%  Similarity=0.297  Sum_probs=85.5

Q ss_pred             hccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022          128 MSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       128 ~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                      +.+.|.+++..   .  .++++|.+|+.+|...|. .|+..+.+. ++.            ++..||||.+|+.++....
T Consensus       147 ~~trv~~~~~~---~--~~~v~~~~~i~~aa~km~~~gv~s~v~l-~~~------------~~~~GIvT~~dl~~~v~~~  208 (610)
T COG2905         147 ILTRVGEVKTL---P--AVTVSPQASIQDAARKMKDEGVSSLVVL-DDS------------GPLLGIVTRKDLRSRVIAD  208 (610)
T ss_pred             HHHHHHHHhcC---C--CcccCccCcHHHHHHHHHhcCCCeEEEE-cCC------------CCccceeehHHHHHHHHhc
Confidence            35577788873   2  478999999999999887 799966664 432            2345999999999887664


Q ss_pred             cccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCC
Q 046022          207 ASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSS  258 (262)
Q Consensus       207 ~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~  258 (262)
                      ...    ...+++++  |+.|+++|...+.+-||+-+|..++|..+||++++
T Consensus       209 g~~----~~~~V~ev--mT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~g  254 (610)
T COG2905         209 GRS----KTQKVSEV--MTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDG  254 (610)
T ss_pred             CCC----cccchhhh--hccCceeecCcchHHHHHHHHHHhCCceeeeecCC
Confidence            211    14678884  99999999999999999999999999999999875

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.50  E-value=7.8e-07  Score=86.09  Aligned_cols=102  Identities=17%  Similarity=0.296  Sum_probs=81.8

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..++.++|..   +  +.++.+++++.+++++|. +++..+||+ +++            ++.+||||..|+.. +    
T Consensus        88 ~VKv~~iMi~---~--pvtv~~d~tv~eA~~~m~~~~~s~l~VV-D~~------------gklvGIVT~rDL~~-~----  144 (479)
T PRK07807         88 WVKSRDLVFD---T--PVTLSPDDTVGDALALLPKRAHGAVVVV-DEE------------GRPVGVVTEADCAG-V----  144 (479)
T ss_pred             hccccccccc---C--CeEECCCCCHHHHHHHHHhcCCceEEEE-CCC------------CeEEEEEeHHHHhc-C----
Confidence            4567888862   3  588999999999999998 688899995 322            23469999999832 1    


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      .     ...++++  +|+++++++++++++.+|+++|.++++..+||||++|.
T Consensus       145 ~-----~~~~V~d--iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~  190 (479)
T PRK07807        145 D-----RFTQVRD--VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGR  190 (479)
T ss_pred             c-----cCCCHHH--hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCe
Confidence            1     1245777  48899999999999999999999999999999998764

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.50  E-value=1e-06  Score=66.35  Aligned_cols=94  Identities=15%  Similarity=0.309  Sum_probs=72.2

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. ++.+++||. ++  +           +++|++|+.|+.+++......+    ..++.+  +
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~-~~--~-----------~~~G~v~~~dl~~~~~~~~~~~----~~~~~~--~   62 (110)
T cd04609           3 VVSVAPDDTVSQAIERMREYGVSQLPVV-DD--G-----------RVVGSIDESDLLDALIEGKAKF----SLPVRE--V   62 (110)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCceeeEe-eC--C-----------eeEEEEeHHHHHHHHhcccccc----CcCHHH--H
Confidence            577999999999999998 688899995 32  1           2359999999999876532211    234555  3


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.+++.++++++++.+|+++|.+.  ..+|||+++|.
T Consensus        63 ~~~~~~~v~~~~~l~~~~~~~~~~--~~~~vv~~~~~   97 (110)
T cd04609          63 MGEPLPTVDPDAPIEELSELLDRG--NVAVVVDEGGK   97 (110)
T ss_pred             hcCCCceeCCCCcHHHHHHHHHhC--CceeEEecCCe
Confidence            777899999999999999999883  34789988764

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.49  E-value=6.8e-07  Score=78.00  Aligned_cols=155  Identities=16%  Similarity=0.331  Sum_probs=112.7

Q ss_pred             hhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022           24 LLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD  103 (262)
Q Consensus        24 ~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D  103 (262)
                      .....+|+|+|++...+++++.+.++.+.+..+.+...++.||+.++                     ++.+.||+-..|
T Consensus        63 ~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed---------------------kD~v~GIL~AKD  121 (293)
T COG4535          63 DIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED---------------------KDHVEGILLAKD  121 (293)
T ss_pred             HHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCC---------------------chhhhhhhhHHH
Confidence            34678899999998999999999999999999999999999999765                     368999999999


Q ss_pred             HHHHHhCCCC-CCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccccc
Q 046022          104 ILAHIAGDDQ-MNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISG  181 (262)
Q Consensus       104 il~~l~~~~~-l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g  181 (262)
                      ++.|+..+.. +                .+.+++.    .  .+.|.+.-.+...++-|. +..|-..|+ |.-      
T Consensus       122 LL~~~~~~~~~F----------------~i~~lLR----P--av~VPESKrvd~lLkeFR~~RnHMAIVi-DEf------  172 (293)
T COG4535         122 LLPFMRSDAEPF----------------DIKELLR----P--AVVVPESKRVDRLLKEFRSQRNHMAIVI-DEF------  172 (293)
T ss_pred             HHHHhcCCcccc----------------cHHHhcc----c--ceecccchhHHHHHHHHHhhcCceEEEE-ecc------
Confidence            9999876432 2                2556654    1  356788888888888888 677766664 421      


Q ss_pred             ceecccCCeeeEecHHHHHHHHHhhc-ccchhhhccccchhcccCcCeEEEeCCCcH
Q 046022          182 VELVESASSYQMLTQMDLLRFMMNHA-SELKDITSHSIRELGALNENVFAITESTKV  237 (262)
Q Consensus       182 ~~~~~~~~~~giITqsDIir~L~~~~-~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~  237 (262)
                            |...|+||-+||+.-+...+ +++..-....|..   .++.-.+|.+=+++
T Consensus       173 ------GgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~---ls~~~~~VrALT~I  220 (293)
T COG4535         173 ------GGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQ---LSRHTWRVRALTEI  220 (293)
T ss_pred             ------CCeeeeEEHHHHHHHHhcccccccchhhhhhhHh---hcCCceEEEecccH
Confidence                  22359999999999887765 3332211222444   34445555555443

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.48  E-value=6.6e-07  Score=70.10  Aligned_cols=96  Identities=20%  Similarity=0.248  Sum_probs=70.0

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHH-----Hhhcccchhhhcccc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFM-----MNHASELKDITSHSI  218 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L-----~~~~~~l~~l~~~ti  218 (262)
                      +.++.+++++.++++.|. .+.+.++|. ++.            ++.+|++|..|+.+..     ... +.  .....++
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~-d~~------------~~~~Giv~~~dl~~~~~~~~~~~~-~~--~~~~~~v   66 (126)
T cd04640           3 PIVIPADTSIDEALELMIKHGVRLLLVV-DSD------------DNFIGVITAVDLLGEEPIKRIQEG-GI--SRSELTV   66 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHcCCcEEEEE-cCC------------CcEEEEEEHHHHhhChhhHHHHHc-CC--CchheEH
Confidence            478999999999999998 677888885 422            2345999999998632     221 00  1123456


Q ss_pred             chhcccCcCeE--EEe----CCCcHHHHHHHHHhCCCcEEEEEcCC
Q 046022          219 RELGALNENVF--AIT----ESTKVIDAIKCMRAALLHAVPIVKSS  258 (262)
Q Consensus       219 ~eL~~~~~~v~--tv~----~~~~~~~A~~lM~~~~isav~VVd~~  258 (262)
                      ++  +|+++..  .+.    +++++.+|++.|.+++.+.+||||++
T Consensus        67 ~~--im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~  110 (126)
T cd04640          67 AD--VMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDRE  110 (126)
T ss_pred             HH--hcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECC
Confidence            66  4775543  343    68899999999999999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.46  E-value=1.6e-06  Score=64.99  Aligned_cols=87  Identities=15%  Similarity=0.268  Sum_probs=70.7

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. .+.+.+||. ++  ++           .+|++|..|++++.          ...++.++  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d~--~~-----------~~Giv~~~~l~~~~----------~~~~~~~~--   56 (105)
T cd04599           3 PITIDPLDSVGRAARLMEKHRIGGLPVV-ED--GK-----------LVGIITSRDVRRAH----------PNRLVADA--   56 (105)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEE-EC--CE-----------EEEEEehHHhhccc----------ccCCHHHH--
Confidence            467899999999999988 577889985 32  12           35999999998732          12345553  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      +.+++.++.+++++.+|++.|.+++...+||+|+
T Consensus        57 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~   90 (105)
T cd04599          57 MTREVVTISPEASLLEAKRLMEEKKIERLPVLRE   90 (105)
T ss_pred             ccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC
Confidence            7778999999999999999999999999999987

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.43  E-value=2.6e-06  Score=68.52  Aligned_cols=97  Identities=20%  Similarity=0.347  Sum_probs=74.8

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc--cc-----------
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS--EL-----------  210 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~--~l-----------  210 (262)
                      +.++.+++++.++++.|. .+...+||+.+   ++           .+|++|..|+.+++.....  ..           
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~-----------~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~   68 (143)
T cd04634           3 PITCNADDTISDAARLLRENKISGAPVLDG---GK-----------LVGIVSESDILKLLVTHDPSGNLWLPSPLELIEL   68 (143)
T ss_pred             cEEecCCCCHHHHHHHHHHcCCCcceEeEC---Ce-----------EEEEecHHHHHHHHHhccCccccccCCcceeeec
Confidence            578999999999999988 68889999633   23           3599999999998864321  00           


Q ss_pred             ---------------hhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          211 ---------------KDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       211 ---------------~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                                     ......++.+  ++.+++.++.+++++.+|++.|.+++.+.+||+++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~  128 (143)
T cd04634          69 PLREFINWEETKRALTDAGKMKVRD--IMTKKVITISPDASIEDAAELMVRHKIKRLPVVED  128 (143)
T ss_pred             cchheeehHHHHHHHHHHhcCCHHH--HcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence                           0012334555  36778999999999999999999999999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.43  E-value=1.2e-06  Score=72.12  Aligned_cols=103  Identities=21%  Similarity=0.332  Sum_probs=82.1

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      .....+|+ +  +  ++.+.|++++.+++.+|. +|+..+||. ++             ++++|-||..||++.+.+.. 
T Consensus        65 ita~~iM~-s--p--vv~v~pdDsi~~vv~lM~~~g~SQlPVi-~~-------------~k~VGsItE~~iv~~~le~~-  124 (187)
T COG3620          65 ITAKTIMH-S--P--VVSVSPDDSISDVVNLMRDKGISQLPVI-EE-------------DKVVGSITENDIVRALLEGM-  124 (187)
T ss_pred             EeHhhhcc-C--C--eeEECchhhHHHHHHHHHHcCCccCcee-eC-------------CeeeeeecHHHHHHHHhccc-
Confidence            45678897 3  3  799999999999999999 899999995 43             23469999999999987753 


Q ss_pred             cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          209 ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       209 ~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                        ..+...++++  +|..+..+|++++++....+++..+  .||-|+ ++|
T Consensus       125 --e~i~~~~vr~--vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G  168 (187)
T COG3620         125 --ESIRSLRVRE--VMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENG  168 (187)
T ss_pred             --cchhhhhHHH--HhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCC
Confidence              3344556666  5999999999999999888888775  578888 444

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.42  E-value=1.8e-06  Score=65.54  Aligned_cols=88  Identities=15%  Similarity=0.283  Sum_probs=68.6

Q ss_pred             eCCCCCHHHHHHHHh-cC-----CCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchh
Q 046022          148 LSPNTSILDCMEVFS-KG-----IHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIREL  221 (262)
Q Consensus       148 v~~~~sL~~a~~~m~-~g-----~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL  221 (262)
                      +.+++++.++++.|. .+     +..+||+ ++.            ++.+|+||..|+++.     .     .+.+++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv-d~~------------~~~~G~v~~~~l~~~-----~-----~~~~v~~~   58 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVV-DEE------------GRLLGVVSLRDLLLA-----D-----PDTPVSDI   58 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEE-CCC------------CCEEEEEEHHHHhcC-----C-----CcchHHHH
Confidence            578999999999997 34     3567775 322            234599999999762     1     13456664


Q ss_pred             cccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          222 GALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       222 ~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                        +.+++.++.+++++.++++.|.+++...+||+|++|.
T Consensus        59 --~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~   95 (109)
T cd04606          59 --MDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGR   95 (109)
T ss_pred             --hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCc
Confidence              7778999999999999999999999999999998764

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.42  E-value=2.2e-06  Score=64.48  Aligned_cols=90  Identities=18%  Similarity=0.365  Sum_probs=72.4

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. .+..++||. ++  ++           .+|+++..|+++.   .       ...+++++  
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~-d~--~~-----------~~g~v~~~~l~~~---~-------~~~~~~~~--   57 (107)
T cd04610           4 VITVSPDNTVKDVIKLIKETGHDGFPVV-DN--GK-----------VVGIVSARDLLGK---D-------PDETVEEI--   57 (107)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeeeEe-EC--CE-----------EEEEEEHHHhhcc---C-------ccccHHHh--
Confidence            577999999999999987 566788885 32  22           3599999999752   1       12456664  


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.+.+.++.+++++.+|+++|.+++...+||++++|.
T Consensus        58 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~   94 (107)
T cd04610          58 MSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNN   94 (107)
T ss_pred             CCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCe
Confidence            7778899999999999999999999999999998874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.41  E-value=3e-06  Score=64.93  Aligned_cols=95  Identities=19%  Similarity=0.296  Sum_probs=70.9

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. ++...++|+ ++..         .+++.+|++|..|++... .  .      ..++++  +
T Consensus         4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~-d~~~---------~~~~~~G~v~~~dl~~~~-~--~------~~~v~~--~   62 (114)
T cd04602           4 PSVLSPDHTVADVLEIKEKKGFSGIPVT-EDGK---------SGGKLLGIVTSRDIDFLT-D--S------ETPLSE--V   62 (114)
T ss_pred             CeEcCCCCCHHHHHHHHHHcCCCceEEe-eCCC---------cCCEEEEEEEhHHhhhhh-c--c------CCCHHH--h
Confidence            467899999999999998 577788885 3210         012346999999986421 1  1      134665  4


Q ss_pred             cCcCeEEEeC--CCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITE--STKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~--~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.+...++..  ++++.+|++.|.+++...+||||++|.
T Consensus        63 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~  101 (114)
T cd04602          63 MTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGE  101 (114)
T ss_pred             cCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCe
Confidence            7766777766  999999999999999999999998763

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.39  E-value=1.7e-06  Score=83.74  Aligned_cols=101  Identities=18%  Similarity=0.276  Sum_probs=79.2

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..++.++|..   +  +.++.+++++.+++++|. .+++.++|. +++             +++||||.+|+.. .    
T Consensus        87 ~VKv~eim~~---~--pvtv~p~~tI~eA~~lm~~~~~~~~vVv-D~g-------------klvGIVT~rDL~~-~----  142 (475)
T TIGR01303        87 FVKSRDLVLD---T--PITLAPHDTVSDAMALIHKRAHGAAVVI-LED-------------RPVGLVTDSDLLG-V----  142 (475)
T ss_pred             hcchhhcccc---C--CeEECCCCCHHHHHHHHHhcCCeEEEEE-ECC-------------EEEEEEEHHHhhc-C----
Confidence            4567788762   3  578999999999999998 567677774 321             2359999999832 1    


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      .     ...++++  +|+++++++++++++.+|+++|.++++..+||||++|.
T Consensus       143 ~-----~~~~V~d--IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~  188 (475)
T TIGR01303       143 D-----RFTQVRD--IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGT  188 (475)
T ss_pred             C-----CCCCHHH--HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCe
Confidence            1     1245777  48999999999999999999999999999999998764

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.37  E-value=2.3e-06  Score=83.40  Aligned_cols=95  Identities=14%  Similarity=0.183  Sum_probs=75.6

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.+++++|. .++..+||+.+++          .+++++||||..||.+ +.        ..+.+++++  
T Consensus       110 pvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~----------~~GklvGIVT~~DL~~-v~--------~~~~~V~eI--  168 (505)
T PLN02274        110 PVVKSPSSTISSLDELKASRGFSSVCVTETGT----------MGSKLLGYVTKRDWDF-VN--------DRETKLSEV--  168 (505)
T ss_pred             CeeeCCCCcHHHHHHHHHhcCCceEEEEeCCC----------cCCeEEEEEEHHHHhh-cc--------ccCCcHHHH--
Confidence            578999999999999998 6888999963321          0134569999999853 21        124567874  


Q ss_pred             cCcC--eEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNEN--VFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~--v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      |+++  ++++.+++++.+|+++|.++++..+||||++|.
T Consensus       169 Mt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~  207 (505)
T PLN02274        169 MTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGE  207 (505)
T ss_pred             hccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCe
Confidence            8765  899999999999999999999999999997763

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.37  E-value=1.2e-06  Score=59.41  Aligned_cols=56  Identities=27%  Similarity=0.467  Sum_probs=45.5

Q ss_pred             cccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHh
Q 046022          132 VSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       132 V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~  205 (262)
                      |+++|..   +  +.++.+++++.++++.|. ++++++||. +++            ++.+|+||.+||++++..
T Consensus         1 v~~~m~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~-d~~------------~~~~G~is~~dl~~~l~~   57 (57)
T PF00571_consen    1 VGDIMTP---P--PITVSPDDSLEEALEIMRKNGISRLPVV-DED------------GKLVGIISRSDLLKALLD   57 (57)
T ss_dssp             HHHHSBS---S--SEEEETTSBHHHHHHHHHHHTSSEEEEE-STT------------SBEEEEEEHHHHHHHHHG
T ss_pred             CeECCcC---C--CEEEcCcCcHHHHHHHHHHcCCcEEEEE-ecC------------CEEEEEEEHHHHHhhhhC
Confidence            4678872   3  689999999999999998 799999996 432            344699999999999863

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.34  E-value=2.9e-06  Score=82.55  Aligned_cols=95  Identities=22%  Similarity=0.423  Sum_probs=75.9

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      ++++.|++++.+++++|. .++.++||+.++..          +++.+||||..|+. +...        ...+++++  
T Consensus       106 pvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~----------~gkLvGIVt~~DL~-~~~~--------~~~~V~di--  164 (495)
T PTZ00314        106 PYVLSPNHTVADVLEIKEKKGFSSILITVDGKV----------GGKLLGIVTSRDID-FVKD--------KSTPVSEV--  164 (495)
T ss_pred             CeecCCCCCHHHHHHHHHHcCCcEEEEEeCCcc----------CCeEEEEEEHHHHh-hccc--------CCCCHHHh--
Confidence            478999999999999998 68899999643210          13456999999986 2211        13567774  


Q ss_pred             cCc--CeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNE--NVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~--~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      |++  +++++.+++++.+|+++|.++++..+||||++|.
T Consensus       165 Mt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~  203 (495)
T PTZ00314        165 MTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGE  203 (495)
T ss_pred             hCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCc
Confidence            876  8999999999999999999999999999998764

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.34  E-value=4e-06  Score=63.24  Aligned_cols=92  Identities=20%  Similarity=0.312  Sum_probs=70.5

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. .+..+++|. +++            ++.+|++|..|+.+...         ...++.++  
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d~~------------~~~~G~v~~~~l~~~~~---------~~~~v~~~--   59 (110)
T cd04601           4 PITVSPDATVAEALELMAEYGISGLPVV-DDD------------GKLVGIVTNRDLRFETD---------LDKPVSEV--   59 (110)
T ss_pred             CeEeCCCCcHHHHHHHHHHcCCceEEEE-cCC------------CEEEEEEEhhHeeeccc---------CCCCHHHh--
Confidence            467899999999999887 577789985 322            23469999999864210         13456664  


Q ss_pred             cCcCeEEEeC-CCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITE-STKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~-~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.+.+..+.. ++++.+|++.|.+.+.+.+||+|++|.
T Consensus        60 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~   97 (110)
T cd04601          60 MTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGK   97 (110)
T ss_pred             cccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCC
Confidence            6665666666 999999999999999999999998764

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.34  E-value=3.8e-06  Score=64.48  Aligned_cols=99  Identities=15%  Similarity=0.182  Sum_probs=73.7

Q ss_pred             eEEeCCCCCHHHHHHHHh-cC-CCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhc
Q 046022          145 LWTLSPNTSILDCMEVFS-KG-IHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELG  222 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g-~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~  222 (262)
                      +.++.+++++.++++.|. ++ .+++||+.+   ++           .+|+++..|+.+++..... .......++.++ 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~-----------~~G~v~~~~l~~~~~~~~~-~~~~~~~~v~~~-   66 (119)
T cd04598           3 APTVSPDTTVNDVLERFERDPDLSALAVVDD---GR-----------PVGLIMREALMELLSTPYG-RALYGKKPVSEV-   66 (119)
T ss_pred             cCccCCCCcHHHHHHHHHhCCCccEEEEEEC---Ce-----------eEEEEEHHHHHHHHhchhh-HHHHcCCcHHHh-
Confidence            456899999999999997 55 788988533   23           3599999999987654211 011123467764 


Q ss_pred             ccCcCeEEEeCCCcHHHHHHHHHhCCC---cEEEEEcCCCC
Q 046022          223 ALNENVFAITESTKVIDAIKCMRAALL---HAVPIVKSSGA  260 (262)
Q Consensus       223 ~~~~~v~tv~~~~~~~~A~~lM~~~~i---sav~VVd~~g~  260 (262)
                       |.+++.++.+++++.+|++.|.+++.   ...+||+++|.
T Consensus        67 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~  106 (119)
T cd04598          67 -MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGR  106 (119)
T ss_pred             -cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCe
Confidence             88889999999999999999999886   34568887764

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.32  E-value=6.2e-06  Score=62.84  Aligned_cols=85  Identities=18%  Similarity=0.180  Sum_probs=68.8

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +..+.+++++.++.+.|. .+..++||. +++.         .++...|+|+..|+.+....                 +
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~---------~~~~~~G~v~~~dl~~~~~~-----------------~   56 (105)
T cd04591           4 VVLLPEGMTVEDLESLLSTTSHNGFPVV-DSTE---------ESPRLVGYILRSQLVVALKN-----------------Y   56 (105)
T ss_pred             eEEecccccHHHHHHHHHhCCCCCcceE-cCCC---------CCCEEEEEEeHHHHHHHHHH-----------------h
Confidence            467899999999999887 467789985 3310         01234699999999886643                 4


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEc
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVK  256 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd  256 (262)
                      |.+++.++++++++.+|+++|.+++...+||++
T Consensus        57 m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~   89 (105)
T cd04591          57 IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD   89 (105)
T ss_pred             ccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence            677889999999999999999999999999995

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.31  E-value=3.3e-06  Score=81.20  Aligned_cols=102  Identities=15%  Similarity=0.227  Sum_probs=80.2

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHhc------CCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHH
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSK------GIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRF  202 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~------g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~  202 (262)
                      ..+++++|+.   +  +.++.+++++.++++.|.+      +...++|+ ++.            ++..|+|+..|+++.
T Consensus       130 e~tvg~iMt~---~--~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vv-d~~------------~~l~GvV~l~dLl~a  191 (449)
T TIGR00400       130 DDSAGRIMTI---E--YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVT-NES------------KHLKGVLSIRDLILA  191 (449)
T ss_pred             cchHHHhCcC---c--eEEECCCCcHHHHHHHHHhcCCCccceeEEEEE-CCC------------CeEEEEEEHHHHhcC
Confidence            5689999972   3  7899999999999999862      33456664 322            234599999998751


Q ss_pred             HHhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          203 MMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       203 L~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                         .       ...++++  +|+++++++++++++.+|++.|.++++.++||||++|.
T Consensus       192 ---~-------~~~~v~~--im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~  237 (449)
T TIGR00400       192 ---K-------PEEILSS--IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGR  237 (449)
T ss_pred             ---C-------CCCcHHH--HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCe
Confidence               1       2346777  48888999999999999999999999999999998874

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.30  E-value=3.6e-06  Score=81.03  Aligned_cols=95  Identities=24%  Similarity=0.435  Sum_probs=76.1

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.+++++|. ++++++||..++..          .++++|+||..|+++..    .     ...+++++  
T Consensus        90 ~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~----------~~~lvGIVt~rDL~~~~----~-----~~~~V~dv--  148 (450)
T TIGR01302        90 PVTISPETTVADVLELMERKGISGIPVVEDGDM----------TGKLVGIITKRDIRFVK----D-----KGKPVSEV--  148 (450)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCC----------CCeEEEEEEHHHHhhhh----c-----CCCCHHHh--
Confidence            578999999999999998 68999999643210          02345999999996421    1     13467774  


Q ss_pred             cC-cCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LN-ENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~-~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      |+ ++++++.+++++.+|+++|.++++..+||||++|.
T Consensus       149 m~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~  186 (450)
T TIGR01302       149 MTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGE  186 (450)
T ss_pred             hCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCc
Confidence            77 48999999999999999999999999999999875

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.30  E-value=5.2e-06  Score=62.62  Aligned_cols=85  Identities=8%  Similarity=0.080  Sum_probs=68.8

Q ss_pred             EEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhccc
Q 046022          146 WTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGAL  224 (262)
Q Consensus       146 ~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~  224 (262)
                      .++.+++++.++++.|. ++..++||. ++  ++           .+|+++..|+.++..           .++.+  ++
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~-d~--~~-----------~~G~v~~~~l~~~~~-----------~~~~~--~~   56 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVV-DY--NK-----------FLGAVYLKDIENATY-----------GDVVD--YI   56 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEE-EC--CE-----------EEEEEEHHHHhhhcc-----------cchhh--hh
Confidence            56899999999999998 688899985 32  22           359999999986321           23444  36


Q ss_pred             CcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          225 NENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       225 ~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      .+...+++++.++.+|++.|.+++...+||+|+
T Consensus        57 ~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~   89 (104)
T cd04594          57 VRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD   89 (104)
T ss_pred             hcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC
Confidence            677899999999999999999999999999984

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.25  E-value=5.6e-06  Score=80.42  Aligned_cols=101  Identities=19%  Similarity=0.327  Sum_probs=80.1

Q ss_pred             ccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc
Q 046022          131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE  209 (262)
Q Consensus       131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~  209 (262)
                      .+.++|..   +  +.++.+++++.+++++|. +++.++||+ ++.            ++++|+||..|+.+..    . 
T Consensus        88 ~~~dim~~---~--~v~i~~~~tv~ea~~~m~~~~~~~lpVv-d~~------------g~lvGiVt~~DL~~~~----~-  144 (486)
T PRK05567         88 RSESGVVT---D--PVTVTPDTTLAEALALMARYGISGVPVV-DEN------------GKLVGIITNRDVRFET----D-  144 (486)
T ss_pred             hhhhcccC---C--CeEeCCCCCHHHHHHHHHHhCCCEEEEE-ccC------------CEEEEEEEHHHhhhcc----c-
Confidence            45667752   3  588999999999999998 688999996 322            2345999999996421    1 


Q ss_pred             chhhhccccchhcccC-cCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          210 LKDITSHSIRELGALN-ENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       210 l~~l~~~ti~eL~~~~-~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                          ...++.++  |+ ++++++.+++++.+|+++|.+++++.+||+|++|.
T Consensus       145 ----~~~~V~di--m~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~  190 (486)
T PRK05567        145 ----LSQPVSEV--MTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGR  190 (486)
T ss_pred             ----CCCcHHHH--cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCc
Confidence                13456764  77 78999999999999999999999999999998874

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.20  E-value=1e-05  Score=77.64  Aligned_cols=104  Identities=18%  Similarity=0.270  Sum_probs=78.6

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..+++++|..   +  +.++.+++++.++++.|. ++++++||+ +++            ++.+|+||..|+++++....
T Consensus       334 ~~~v~~im~~---~--~~~v~~~~tl~ea~~~m~~~~~~~~~Vv-d~~------------~~~~Givt~~dl~~~~~~~~  395 (454)
T TIGR01137       334 NATVKDLHLP---A--PVTVHPTETVGDAIEILREYGFDQLPVV-TEA------------GKVLGSVTLRELLSALFAGK  395 (454)
T ss_pred             cCCHHHhCcC---C--CeEECCCCcHHHHHHHHHHcCCCEEEEE-cCC------------CeEEEEEEHHHHHHHHhccC
Confidence            4689999962   3  688999999999999998 578899995 322            23459999999999776431


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                      ..    ...++.+  +|++++.++++++++.+|+++|.+++   .+||+++|
T Consensus       396 ~~----~~~~v~~--im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g  438 (454)
T TIGR01137       396 AN----PDDAVSK--VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEG  438 (454)
T ss_pred             CC----cCCCHHH--hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECC
Confidence            11    1345776  48888999999999999999998864   35565554

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.20  E-value=1e-05  Score=77.64  Aligned_cols=136  Identities=11%  Similarity=0.213  Sum_probs=104.0

Q ss_pred             cccCCcchHHHHHhh--hcceeccccccCCcEEEEcCCCCHHHHHHHHHh-----CCCceEEEecCCCCcccCCCccccc
Q 046022           11 SSAGKHAADENQRLL--REAKVRDLTAEKRRIVEVPHTASLAHTMNALVA-----NKVVAVPVAAPPGQWIGAGGSMIME   83 (262)
Q Consensus        11 ~~~~~~~~~~~~~~l--~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~-----~~i~s~PVvd~~~~~~~~~~~~~~~   83 (262)
                      ++.++.-+.+.+..+  .+-+++-+|.  .+.++++++.|+.+|+..+++     ..+..+-|+|..             
T Consensus       113 ~~l~~~~r~~v~~~l~y~e~taG~~Mt--~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-------------  177 (451)
T COG2239         113 SLLDPEERARVRQLLSYPEDTAGRIMT--TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-------------  177 (451)
T ss_pred             HhCCHHHHHHHHHhcCCChhhhhccce--eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-------------
Confidence            344444555555544  3346999995  589999999999999999994     456778899875             


Q ss_pred             ccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-
Q 046022           84 SDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-  162 (262)
Q Consensus        84 ~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-  162 (262)
                               ++++|+++.++++..=.                   ..+++++|..   .  ++++.+++...++..+|. 
T Consensus       178 ---------~~L~Gvvsl~~Ll~a~~-------------------~~~i~~im~~---~--~~~V~~~~dqeevA~~~~~  224 (451)
T COG2239         178 ---------GKLLGVVSLRDLLTAEP-------------------DELLKDLMED---D--VVSVLADDDQEEVARLFEK  224 (451)
T ss_pred             ---------cceEEEeeHHHHhcCCc-------------------HhHHHHHhcc---c--ceeecccCCHHHHHHHHHH
Confidence                     68999999999763211                   2369999972   3  589999999999999998 


Q ss_pred             cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          163 KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       163 ~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      .+.-.+||+.++             ++.+|+||+-|++.-+.+..
T Consensus       225 ydl~a~PVVd~~-------------~~LiG~itiDDiidvi~eEa  256 (451)
T COG2239         225 YDLLAVPVVDED-------------NRLIGIITIDDIIDVIEEEA  256 (451)
T ss_pred             hCCeecceECCC-------------CceeeeeeHHHHHHHHHHHH
Confidence            688899996432             34569999999999887643

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.16  E-value=3.2e-05  Score=58.16  Aligned_cols=88  Identities=17%  Similarity=0.206  Sum_probs=69.0

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      +.++.+++++.++++.|. .+..++||. ++.            ++.+|++++.++++..    .      ..++.+  +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~------------~~~~g~v~~~~l~~~~----~------~~~~~~--~   57 (106)
T cd04638           3 VVYVTLPGTRDDVLELLKEYKVSGVPVV-KKS------------GELVGIITRKDLLRNP----E------EEQLAL--L   57 (106)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCeEEEE-cCC------------CcEEEEEEHHHHHhcc----c------cchHHH--H
Confidence            567899999999999987 577788885 322            2346999999997521    1      123444  3


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      +.+++.++.+++++.+|+..|.+++...+||+|+
T Consensus        58 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~   91 (106)
T cd04638          58 MTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD   91 (106)
T ss_pred             hcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            6778899999999999999999999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11573 hypothetical protein; Provisional

Probab=98.15  E-value=1.6e-05  Score=75.74  Aligned_cols=111  Identities=14%  Similarity=0.202  Sum_probs=84.7

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      +++|+++|..  +.. +..++.++++.++++.+. .|..|+||. +++.+++           +|+|.-.|++.++.+. 
T Consensus       186 ~~~v~eiMtP--r~~-i~~l~~~~~~~e~~~~~~~~~~SR~PVy-~~~~D~I-----------iGiv~~kDll~~~~~~-  249 (413)
T PRK11573        186 KVTVDDIMVP--RNE-IVGIDINDDWKSILRQLTHSPHGRIVLY-RDSLDDA-----------ISMLRVREAYRLMTEK-  249 (413)
T ss_pred             CCChhhcCCc--cce-EEEEECCCCHHHHHHHHHhCCCceEEEE-cCCCCce-----------EEEEEHHHHHHHhhcc-
Confidence            6799999983  332 789999999999999887 799999995 4443444           4999999999865432 


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGAT  261 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~~  261 (262)
                      ..+   ...++.+  + -+++..|++++++.++++.|.+++..=.-|||+-|.+
T Consensus       250 ~~~---~~~~l~~--~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~  297 (413)
T PRK11573        250 KEF---TKENMLR--A-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDI  297 (413)
T ss_pred             CcC---CHHHHHh--h-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCe
Confidence            111   0112222  2 3578999999999999999999988888899998875

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.11  E-value=7.3e-06  Score=80.01  Aligned_cols=144  Identities=15%  Similarity=0.250  Sum_probs=99.9

Q ss_pred             HhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHH
Q 046022           23 RLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTML  102 (262)
Q Consensus        23 ~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~  102 (262)
                      -.+++.+++|+|.  +|+++++.-+.+...+++|...+..+.||+|...                 +...+++.|+|=..
T Consensus       577 ~~mr~L~a~ev~~--~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~-----------------~~~~~~l~GlILRs  637 (762)
T KOG0474|consen  577 PYMRNLTAGEVMS--KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPP-----------------SNEAGRLHGLILRS  637 (762)
T ss_pred             hHhhhhhHhhhcc--CCeEEEechhhHHHHHHHHHhcCcCCCccccCCC-----------------CccchhhhHHHHHH
Confidence            3567889999994  4999999999999999999999999999999752                 00125788998888


Q ss_pred             HHHHHHhCCCC---------CCCCCC-CcchHH---------------hhhccccccccccCCCCCeeEEeCCCCCHHHH
Q 046022          103 DILAHIAGDDQ---------MNGSDD-APDDLD---------------KKMSAPVSSIIGHCPEGLSLWTLSPNTSILDC  157 (262)
Q Consensus       103 Dil~~l~~~~~---------l~~~~~-~~~~~~---------------~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a  157 (262)
                      .++.-+-....         ++.... ...++.               ..+-..+..+|+.   .  .++|.+++|+..+
T Consensus       638 hl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~---s--PytV~~~mSl~k~  712 (762)
T KOG0474|consen  638 HLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP---S--PYTVPETMSLAKA  712 (762)
T ss_pred             HHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC---C--CcccCcccchHHH
Confidence            87765543111         111100 011111               1123344455652   2  4789999999999


Q ss_pred             HHHHhc-CCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHH
Q 046022          158 MEVFSK-GIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFM  203 (262)
Q Consensus       158 ~~~m~~-g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L  203 (262)
                      ..+|.+ |.|++.|+.+..             ...||+||.|+.+|=
T Consensus       713 ~~lFR~lGLRhLlVv~~~~-------------~~~gilTR~D~~~~~  746 (762)
T KOG0474|consen  713 FILFRQLGLRHLLVVPKTN-------------RVVGILTRKDLARYR  746 (762)
T ss_pred             HHHHHHhcceeEEEecCCC-------------ceeEEEehhhhhhHH
Confidence            999995 999999953321             235999999999864

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.10  E-value=6.2e-06  Score=63.94  Aligned_cols=55  Identities=22%  Similarity=0.407  Sum_probs=48.6

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA  106 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~  106 (262)
                      .+++|+|..  ++.++++++++.+|++.|.++++..+||++.+                      ++++|+|+..||.+
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~----------------------~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDD----------------------GTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCC----------------------CeEEEEEEHHHhhc
Confidence            679999953  56789999999999999999999999999875                      58999999999753

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.08  E-value=7.6e-05  Score=70.86  Aligned_cols=121  Identities=8%  Similarity=0.109  Sum_probs=87.8

Q ss_pred             ceeccccccCCc-EEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022           28 AKVRDLTAEKRR-IVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA  106 (262)
Q Consensus        28 ~~v~dlm~~~~~-lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~  106 (262)
                      .++.++|..... .+...++.+..+|++.|..++..++.|+|..                      +++.|+++..|+..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~g~~~~~~~~~  331 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG----------------------NKFVGAVSIDSLKT  331 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC----------------------CcEEEEEeHHHHHh
Confidence            346677732111 2234467789999999999999999999975                      68999999999876


Q ss_pred             HHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCeeEeecCCCCcccccceecc
Q 046022          107 HIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       107 ~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      +....                  .++.+.+..   .  +.++.++++|.+++..|.+.-..+||+ +++           
T Consensus       332 ~~~~~------------------~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~-----------  376 (400)
T PRK10070        332 ALTQQ------------------QGLDAALID---A--PLAVDAQTPLSELLSHVGQAPCAVPVV-DED-----------  376 (400)
T ss_pred             hhhcC------------------Cchhhhhcc---C--CceeCCCCCHHHHHHHHHhCCCcEEEE-CCC-----------
Confidence            54321                  134555531   2  467999999999999988544558885 422           


Q ss_pred             cCCeeeEecHHHHHHHHHhh
Q 046022          187 SASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~~~  206 (262)
                       ++..|+||..++++.|...
T Consensus       377 -~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        377 -QQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             -CcEEEEEEHHHHHHHHHhc
Confidence             2345999999999999764

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.97  E-value=6.6e-06  Score=80.87  Aligned_cols=72  Identities=10%  Similarity=0.212  Sum_probs=59.7

Q ss_pred             cchHHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeE
Q 046022           16 HAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHY   95 (262)
Q Consensus        16 ~~~~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~   95 (262)
                      ......+.+-.+.+|+++|. +++++++++++++.+|.+.|.++++..+||+|++                      +++
T Consensus       234 dt~~t~~~l~~~~~V~~iM~-~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~----------------------g~l  290 (546)
T PRK14869        234 DTFTTARLINQSIPVSYIMT-TEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED----------------------GKV  290 (546)
T ss_pred             cHHHHHHHhhcCCCHHHhcc-CCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCC----------------------CCE
Confidence            33344455666788999995 2578899999999999999999999999999975                      689


Q ss_pred             EEEEeHHHHHHHHhC
Q 046022           96 IGMLTMLDILAHIAG  110 (262)
Q Consensus        96 vGivs~~Dil~~l~~  110 (262)
                      +|+++..|++.+...
T Consensus       291 vGiit~~dl~~~~~~  305 (546)
T PRK14869        291 VGVISRYHLLSPVRK  305 (546)
T ss_pred             EEEEEHHHhhccccC
Confidence            999999999986543

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=97.95  E-value=6.8e-05  Score=71.80  Aligned_cols=109  Identities=19%  Similarity=0.289  Sum_probs=84.7

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      +++|+++|+. ..+  +..++.+.++.++.+.+. .+..|+||.. +..+++           +|++.-.|+++++....
T Consensus       205 ~~~v~eiMtP-R~~--i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~~D~i-----------iGiv~~Kdll~~~~~~~  269 (429)
T COG1253         205 DRTVREIMTP-RTD--IVALDLTDTVEELIELILESGHSRIPVYD-GDLDNI-----------IGIVHVKDLLRALLDGQ  269 (429)
T ss_pred             CcEeeeEeee-ccc--EEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CCCCcE-----------EEEEEHHHHHHHHhcCc
Confidence            6799999983 233  678888999999999886 7889999964 444444           49999999999887753


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGAT  261 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~~  261 (262)
                      +.      .....  .. ++++.|++++++.++++.|++++..=.-|+|+-|.+
T Consensus       270 ~~------~~~~~--~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~  314 (429)
T COG1253         270 SD------LDLRV--LV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGV  314 (429)
T ss_pred             cc------cchhh--cc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCe
Confidence            20      01111  12 289999999999999999999988888888988765

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.82  E-value=0.00033  Score=65.69  Aligned_cols=108  Identities=10%  Similarity=0.144  Sum_probs=82.3

Q ss_pred             EEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCCCC
Q 046022           41 VEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDA  120 (262)
Q Consensus        41 v~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~~~  120 (262)
                      +...++.+..++++.|..++..++.|++.+                      +++.|+++..++..++-..         
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~g~~~~~~~~~~~~~~---------  301 (363)
T TIGR01186       253 ITKTADKGPRSALQLMRDERVDSLYVVDRQ----------------------NKLVGVVDVESIKQARKKA---------  301 (363)
T ss_pred             eeecCCCCHHHHHHHHHhcCCceEEEEcCC----------------------CCEEEEEeHHHHHHHhhcC---------
Confidence            356677899999999999999999999875                      5899999999987766431         


Q ss_pred             cchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCeeEeecCCCCcccccceecccCCeeeEecHHHHH
Q 046022          121 PDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLL  200 (262)
Q Consensus       121 ~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIi  200 (262)
                               ..+.+.+..   .  +.++.++++|.+++..|.+.-+.+||+ +++            ++..|+||+.+|+
T Consensus       302 ---------~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~------------~~~~g~i~~~~~~  354 (363)
T TIGR01186       302 ---------QGLQDVLID---D--IYTVDAGTLLRETVRKVLKAGIKVPVV-DED------------QRLVGIVTRGSLV  354 (363)
T ss_pred             ---------Cchhhhhcc---C--CceECCCCcHHHHHHHHHhCCCCEEEE-CCC------------CcEEEEEEHHHHH
Confidence                     134555541   2  467999999999999998433349986 432            2345999999999


Q ss_pred             HHHHhh
Q 046022          201 RFMMNH  206 (262)
Q Consensus       201 r~L~~~  206 (262)
                      +.|...
T Consensus       355 ~~~~~~  360 (363)
T TIGR01186       355 DALYDS  360 (363)
T ss_pred             HHHHhh
Confidence            998764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.81  E-value=8.5e-05  Score=46.70  Aligned_cols=47  Identities=21%  Similarity=0.413  Sum_probs=41.5

Q ss_pred             EEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHH
Q 046022           40 IVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHI  108 (262)
Q Consensus        40 lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l  108 (262)
                      .+++++++++.++++.|.++++..+||++++                      ++++|+++..|++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE----------------------GRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCC----------------------CeEEEEEEHHHHHHhh
Confidence            4678999999999999999999999999864                      5899999999987654

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=97.78  E-value=5.7e-05  Score=70.71  Aligned_cols=108  Identities=18%  Similarity=0.261  Sum_probs=83.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +.++++|+.|+.++++.-..+++..+||....                   ....+++|+||.+| +.|+ ++.      
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g-------------------~~~~KLvG~vtsrd-i~f~-~~~------  169 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDG-------------------KRGSKLVGIITSRD-IQFL-EDN------  169 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCC-------------------cccceeEEEEehhh-hhhh-hcc------
Confidence            34688999999999999999999999997532                   11368999999999 5666 322      


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                                .++++++|+.   +  .++...+-+|.++=+++. ..-.++||+.+..  ++           +.+|+++
T Consensus       170 ----------~~~~~~vmt~---~--~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~g--el-----------va~~~rt  221 (503)
T KOG2550|consen  170 ----------SLLVSDVMTK---N--PVTGAQGITLKEANEILKKIKKGKLPVVDDKG--EL-----------VAMLSRT  221 (503)
T ss_pred             ----------cchhhhhccc---c--cccccccccHHHHHHHHHhhhcCCcceeccCC--ce-----------eeeeehh
Confidence                      2478999983   2  267788899999999988 4667899964322  23           4899999


Q ss_pred             HHHH
Q 046022          198 DLLR  201 (262)
Q Consensus       198 DIir  201 (262)
                      |+.+
T Consensus       222 Dl~k  225 (503)
T KOG2550|consen  222 DLMK  225 (503)
T ss_pred             hhhh
Confidence            9976

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.57  E-value=0.00055  Score=67.18  Aligned_cols=128  Identities=14%  Similarity=0.248  Sum_probs=90.0

Q ss_pred             CCcEEEEcCC-CCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCC
Q 046022           37 KRRIVEVPHT-ASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMN  115 (262)
Q Consensus        37 ~~~lv~v~~~-~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~  115 (262)
                      .+++++++.+ .|++|...+|.+......||+-+++                    +++++|+++.+|+...+...+...
T Consensus       555 ~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~--------------------sq~lvGfv~rr~l~~~i~~ar~~q  614 (696)
T KOG0475|consen  555 ESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSED--------------------SQRLVGFVLRRNLFLAILNARKIQ  614 (696)
T ss_pred             chhheeccccceeHHHHHHHHhhcccCCceEEEccc--------------------cceeEEEEchHHHHHHHhhhcccc
Confidence            3468888887 9999999999999999999986542                    379999999999998887421111


Q ss_pred             --------CCCCCcchHH-hh-hccccccccccCCCCCeeEEeCCCCCHHHHHHHHhc-CCCeeEeecCCCCccccccee
Q 046022          116 --------GSDDAPDDLD-KK-MSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSK-GIHRALVPMDSRMENISGVEL  184 (262)
Q Consensus       116 --------~~~~~~~~~~-~~-~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~-g~~rv~V~~~~~~~~~~g~~~  184 (262)
                              ...+...... .. -....+++|+.   .  +.++...++..-++.+|.+ |++.+.|..+           
T Consensus       615 ~~~~~~~~~f~~~~~~~~~~~~~~~~lk~il~~---t--p~tv~d~tp~~~v~~~F~~lg~~~~~v~~~-----------  678 (696)
T KOG0475|consen  615 SFIVTTSIYFNDPSPSAVAGIPSRLDLKDILDM---T--PFTVTDLTPMETVVDLFRKLGLRQILVTKN-----------  678 (696)
T ss_pred             ccceecccccCCCCccccCCCCCCcCceeeccC---C--cccccccCcHHHHHHHHHhhCceEEEEccC-----------
Confidence                    0000000000 00 02246677764   2  4789999999999999985 8999988433           


Q ss_pred             cccCCeeeEecHHHHHHHH
Q 046022          185 VESASSYQMLTQMDLLRFM  203 (262)
Q Consensus       185 ~~~~~~~giITqsDIir~L  203 (262)
                         |...|+||..|++++.
T Consensus       679 ---G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  679 ---GILLGIITKKDCLRHT  694 (696)
T ss_pred             ---CeeEeeeehHHHHHhh
Confidence               2335999999999975

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=97.45  E-value=0.00044  Score=63.83  Aligned_cols=102  Identities=21%  Similarity=0.259  Sum_probs=80.6

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      ..|.++|.+ .+.  .-.+.+++++.+-.++-. .|..|+||+ |...            +++|++|-.|++..      
T Consensus       188 ~~Vedi~~P-~~~--~~yL~~~d~v~d~~~l~~kt~~sRfPVv-n~~~------------kvvGvVt~rDv~~~------  245 (432)
T COG4109         188 ITVEDIMTP-LED--TSYLRETDTVEDWLDLVEKTGHSRFPVV-NRSM------------KVVGVVTMRDVLDK------  245 (432)
T ss_pred             eeHHHhccc-ccc--ceeccccccHHHHHHHHHHcCCCcccee-cccc------------eEEEEEEehhhhcC------
Confidence            367888873 233  456889999999888766 688999995 4332            34599999998652      


Q ss_pred             cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          209 ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       209 ~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                          .++.+|..  .|+++++++.+.+++..+.++|.-.++.-+||||++.
T Consensus       246 ----~~~t~ieK--VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~  290 (432)
T COG4109         246 ----KPSTTIEK--VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNN  290 (432)
T ss_pred             ----CCCccHHH--HhccCCeeecccchHHHHHHHHHhccceeeeEEcCCc
Confidence                12456665  5999999999999999999999999999999999875

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.02  E-value=0.0062  Score=57.21  Aligned_cols=90  Identities=9%  Similarity=0.203  Sum_probs=69.8

Q ss_pred             EEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhccc
Q 046022          146 WTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGAL  224 (262)
Q Consensus       146 ~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~  224 (262)
                      ....++.+..++++.|. ++...+.|+.+ +            +...|+++..++.+|+...         .++.+.  +
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~g~~~~~~~~~~~~~~---------~~~~~~--~  308 (363)
T TIGR01186       253 ITKTADKGPRSALQLMRDERVDSLYVVDR-Q------------NKLVGVVDVESIKQARKKA---------QGLQDV--L  308 (363)
T ss_pred             eeecCCCCHHHHHHHHHhcCCceEEEEcC-C------------CCEEEEEeHHHHHHHhhcC---------Cchhhh--h
Confidence            45677888999999888 67778877533 2            2345999999998887542         134442  4


Q ss_pred             CcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          225 NENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       225 ~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      ...+.++++++++.+|+.+|.+++.. +||||++|.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~  343 (363)
T TIGR01186       309 IDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQR  343 (363)
T ss_pred             ccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCc
Confidence            56788999999999999999999999 999998874

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=97.01  E-value=0.00095  Score=64.22  Aligned_cols=60  Identities=23%  Similarity=0.382  Sum_probs=53.4

Q ss_pred             cceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022           27 EAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA  106 (262)
Q Consensus        27 ~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~  106 (262)
                      ...++|+|..  .++++.+++..+++.+++.++++.++||+|++                      ++++|++|..|++.
T Consensus       195 ~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~----------------------~~LiG~itiDDiid  250 (451)
T COG2239         195 DELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDED----------------------NRLIGIITIDDIID  250 (451)
T ss_pred             HhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCC----------------------CceeeeeeHHHHHH
Confidence            4568999953  48999999999999999999999999999985                      69999999999998


Q ss_pred             HHhC
Q 046022          107 HIAG  110 (262)
Q Consensus       107 ~l~~  110 (262)
                      -+-+
T Consensus       251 vi~e  254 (451)
T COG2239         251 VIEE  254 (451)
T ss_pred             HHHH
Confidence            7765

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=96.85  E-value=0.0041  Score=57.97  Aligned_cols=111  Identities=16%  Similarity=0.218  Sum_probs=82.8

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcC-CCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKG-IHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g-~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      +.+|+|+|.+  ++- +..++.|++..++++-+.+. ..|+|+.. +..+++           +||+--.|++|++.++.
T Consensus       199 ~~tV~DIMvp--R~~-i~~id~d~~~e~iv~ql~~s~HtRiplyr-~~~DnI-----------iGvlh~r~llr~l~e~~  263 (423)
T COG4536         199 NLTVSDIMVP--RNE-IIGIDIDDPWEEIVRQLLHSPHTRIPLYR-DDLDNI-----------IGVLHVRDLLRLLNEKN  263 (423)
T ss_pred             cceeeeeecc--ccc-eeeecCCCCHHHHHHHHhhCCCCceeeec-CChhHh-----------hhhhhHHHHHHHhhccC
Confidence            3589999973  333 78899999999999977644 45999953 344444           49999999999998875


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGAT  261 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~~  261 (262)
                      . +...   .+..   .-..+..|++++|+.+-+..|.+++-.=--|||+=|+.
T Consensus       264 ~-~~k~---d~~~---~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i  310 (423)
T COG4536         264 E-FTKE---DILR---AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDI  310 (423)
T ss_pred             c-ccHh---HHHH---HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcE
Confidence            3 3211   1111   12468999999999999999999877767788988874

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=96.81  E-value=0.002  Score=60.54  Aligned_cols=95  Identities=17%  Similarity=0.292  Sum_probs=76.2

Q ss_pred             EEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhccc
Q 046022          146 WTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGAL  224 (262)
Q Consensus       146 ~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~  224 (262)
                      +...|+.++.++++... .|+..+||..++..          +++++|+||-+|+ .|+.++        +..+.+  +|
T Consensus       119 ~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~----------~~KLvG~vtsrdi-~f~~~~--------~~~~~~--vm  177 (503)
T KOG2550|consen  119 IVISPTTTVGEVKEAKEKHGFSGIPVTEDGKR----------GSKLVGIITSRDI-QFLEDN--------SLLVSD--VM  177 (503)
T ss_pred             cccCCcccchhhhhhcccccccccccccCCcc----------cceeEEEEehhhh-hhhhcc--------cchhhh--hc
Confidence            56899999999999766 79999999644432          2456799999996 666333        234565  47


Q ss_pred             CcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCCC
Q 046022          225 NENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGAT  261 (262)
Q Consensus       225 ~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~~  261 (262)
                      ++..++......+.+|=..+.+++-+.+||||++|+.
T Consensus       178 t~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gel  214 (503)
T KOG2550|consen  178 TKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGEL  214 (503)
T ss_pred             ccccccccccccHHHHHHHHHhhhcCCcceeccCCce
Confidence            8777889999999999999999999999999999975

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=96.77  E-value=0.012  Score=56.10  Aligned_cols=89  Identities=12%  Similarity=0.164  Sum_probs=67.7

Q ss_pred             EeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcccC
Q 046022          147 TLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALN  225 (262)
Q Consensus       147 ~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~~  225 (262)
                      ...++.+..+++..|. .+...+.|+ +..            +...|+|+..++.++....         .++.+  .+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~~~~g~~~~~~~~~~~~~~---------~~~~~--~~~  344 (400)
T PRK10070        289 RKTPGFGPRSALKLLQDEDREYGYVI-ERG------------NKFVGAVSIDSLKTALTQQ---------QGLDA--ALI  344 (400)
T ss_pred             ccCCCCCHHHHHHHHHhcCCceEEEE-cCC------------CcEEEEEeHHHHHhhhhcC---------Cchhh--hhc
Confidence            3457778899999988 788899885 322            2345999999998876432         13343  245


Q ss_pred             cCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          226 ENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       226 ~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      ..+.++.+++++.+|+..|...... +||||++|.
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~  378 (400)
T PRK10070        345 DAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQ  378 (400)
T ss_pred             cCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCc
Confidence            6688999999999999999997655 999998874

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=96.56  E-value=0.0053  Score=54.03  Aligned_cols=108  Identities=25%  Similarity=0.360  Sum_probs=82.4

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ...|+++|-  |+.. ..++..+.+|.+++..+. ....|+||. .+..+++           .||+-..|+++|+.+..
T Consensus        66 dl~vrDiMI--PRSQ-M~~l~~~~~l~~~l~~iiesaHSRfPVi-~edkD~v-----------~GIL~AKDLL~~~~~~~  130 (293)
T COG4535          66 DLRVRDIMI--PRSQ-MITLKRNQTLDECLDVIIESAHSRFPVI-SEDKDHV-----------EGILLAKDLLPFMRSDA  130 (293)
T ss_pred             HhhHhhhcc--cHHH-heeccccCCHHHHHHHHHHhccccCCcc-cCCchhh-----------hhhhhHHHHHHHhcCCc
Confidence            457999996  2333 588999999999999887 566799994 3333344           38999999999988764


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      ..|      .+++   +=+|.+.|+++..+---+|.++.++-.-.-|||+=|.
T Consensus       131 ~~F------~i~~---lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGg  174 (293)
T COG4535         131 EPF------DIKE---LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGG  174 (293)
T ss_pred             ccc------cHHH---hcccceecccchhHHHHHHHHHhhcCceEEEEeccCC
Confidence            433      3455   2478999999999999999999887666667777664

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=96.47  E-value=0.0063  Score=46.89  Aligned_cols=58  Identities=14%  Similarity=0.348  Sum_probs=44.9

Q ss_pred             HHHHhhcccchh--hhc--cccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          201 RFMMNHASELKD--ITS--HSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       201 r~L~~~~~~l~~--l~~--~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +|+.+..+.-.+  +.+  .++++  +|.+++.++.+++++.+|++.|.+++...+||+|++|.
T Consensus        39 ~~vl~~~~~~~p~ll~~v~~~v~d--im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~  100 (113)
T cd04597          39 RYVLEYLGIEPPILLADVHPRVRD--VINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGT  100 (113)
T ss_pred             HHHHHHcCCCCchhhcchhhhHHH--hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCe
Confidence            666666554222  222  45666  47788999999999999999999999999999998763

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=96.06  E-value=0.022  Score=35.23  Aligned_cols=46  Identities=24%  Similarity=0.462  Sum_probs=36.5

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHH
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFM  203 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L  203 (262)
                      +.++.+++++.++++.|. .+.+++||..+ +            +..+|+++..++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~------------~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-E------------GRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECC-C------------CeEEEEEEHHHHHHhh
Confidence            367899999999999998 68899999533 2            2335999999998865

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=90.98  E-value=0.71  Score=46.08  Aligned_cols=118  Identities=13%  Similarity=0.184  Sum_probs=83.4

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      +-.++++|+ +  +  ++++..-+++..++++++ ...+.+||+++....        +.+.+.|+|=++.++..|.+..
T Consensus       581 ~L~a~ev~~-~--p--vi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~--------~~~~l~GlILRshl~vlL~~~~  647 (762)
T KOG0474|consen  581 NLTAGEVMS-K--P--VICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSN--------EAGRLHGLILRSHLLVLLKKRV  647 (762)
T ss_pred             hhhHhhhcc-C--C--eEEEechhhHHHHHHHHHhcCcCCCccccCCCCc--------cchhhhHHHHHHHHHHHHHhhh
Confidence            457899997 2  2  799999999999999998 566789996443221        1234568888888887665432


Q ss_pred             cc----------------chhh--hccccchhc--------------ccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEE
Q 046022          208 SE----------------LKDI--TSHSIRELG--------------ALNENVFAITESTKVIDAIKCMRAALLHAVPIV  255 (262)
Q Consensus       208 ~~----------------l~~l--~~~ti~eL~--------------~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VV  255 (262)
                      -.                +..+  ...+++|+.              +|++.+++|.+++++.-|+.+++.-|+..+-||
T Consensus       648 f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv  727 (762)
T KOG0474|consen  648 FVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVV  727 (762)
T ss_pred             hhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEe
Confidence            00                0000  012233322              377889999999999999999999999999999


Q ss_pred             cCCC
Q 046022          256 KSSG  259 (262)
Q Consensus       256 d~~g  259 (262)
                      +...
T Consensus       728 ~~~~  731 (762)
T KOG0474|consen  728 PKTN  731 (762)
T ss_pred             cCCC
Confidence            8653

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=88.07  E-value=2  Score=40.77  Aligned_cols=47  Identities=9%  Similarity=0.154  Sum_probs=35.9

Q ss_pred             eEEeCCCCCHHHHHHHHhcCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHh
Q 046022          145 LWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~  205 (262)
                      +.++.++++|.+++..+.+.-+-++|+ ++             ++.+|+||+.+|+..|..
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~-------------~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       335 PTVINPDTLMRDVLAARHRTGGAILLV-EN-------------GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             CcccCCCCcHHHHHHHHhcCCCCeEEe-eC-------------CeEEEEEeHHHHHHHHhc
Confidence            467999999999999887544567774 32             233599999999998754

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=87.20  E-value=1.3  Score=41.92  Aligned_cols=48  Identities=10%  Similarity=0.107  Sum_probs=40.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAG  110 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~  110 (262)
                      ...++++++++.+++..+.+... -+||++.                       ++++|+|+..+++..+.+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-----------------------~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       334 APTVINPDTLMRDVLAARHRTGG-AILLVEN-----------------------GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-----------------------CeEEEEEeHHHHHHHHhc
Confidence            45689999999999999888775 4788874                       589999999999988753

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=87.08  E-value=1.8  Score=40.31  Aligned_cols=124  Identities=9%  Similarity=0.129  Sum_probs=78.9

Q ss_pred             CcchHHHHHhhhc------ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccc
Q 046022           15 KHAADENQRLLRE------AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQT   88 (262)
Q Consensus        15 ~~~~~~~~~~l~~------~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~   88 (262)
                      +-|++-.++|..+      .++.++|....+.+.-.+...-..|++.+.......+-+++..                  
T Consensus       255 ~PAndYV~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~------------------  316 (386)
T COG4175         255 NPANDYVRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRG------------------  316 (386)
T ss_pred             CccHHHHHHHHhcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhcc------------------
Confidence            3444444555543      3678888532222222333444678888888777666666632                  


Q ss_pred             cCcCCeEEEEEeHHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCee
Q 046022           89 GAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRA  168 (262)
Q Consensus        89 ~~~~~~~vGivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv  168 (262)
                          ++++|+++..+++..                           .+. +  .  +.++.+++.+.+.+....+.--.+
T Consensus       317 ----~~~~g~v~~~~~~~~---------------------------~~~-~--~--~~~v~~d~~~~~~~~~~~~~~~p~  360 (386)
T COG4175         317 ----NKFVGVVSIDSLVKA---------------------------ALI-D--D--VLTVDADTPLSEILARIRQAPCPV  360 (386)
T ss_pred             ----CceeeEEeccchhcc---------------------------ccc-c--c--ccccCccchHHHHHHHHhcCCCce
Confidence                579999988774432                           121 1  1  578999999999999888555566


Q ss_pred             EeecCCCCcccccceecccCCeeeEecHHHHHHHHHh
Q 046022          169 LVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       169 ~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~  205 (262)
                      +|+.+ +            ++.+|+|+...++..|..
T Consensus       361 aVvde-~------------~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         361 AVVDE-D------------GRYVGIISRGELLEALAR  384 (386)
T ss_pred             eEEcC-C------------CcEEEEecHHHHHHHHhc
Confidence            66433 2            334599999999998865

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=83.54  E-value=1.9  Score=42.31  Aligned_cols=112  Identities=21%  Similarity=0.258  Sum_probs=75.3

Q ss_pred             HhhhcceeccccccCCcEEEEcCCCCHH-HHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeH
Q 046022           23 RLLREAKVRDLTAEKRRIVEVPHTASLA-HTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTM  101 (262)
Q Consensus        23 ~~l~~~~v~dlm~~~~~lv~v~~~~tv~-eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~  101 (262)
                      -.|....++|+|+.-..+..++.+..+. +......+++.+++||++...                     ...+|.+=.
T Consensus       199 l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~---------------------~~~i~~~L~  257 (498)
T KOG2118|consen  199 LELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEP---------------------KNKIGGLLV  257 (498)
T ss_pred             HHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcc---------------------cchhhHHHH
Confidence            4567788999998766777888888887 556666699999999998652                     334444333


Q ss_pred             HHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCeeEeecC
Q 046022          102 LDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMD  173 (262)
Q Consensus       102 ~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv~V~~~  173 (262)
                      ...++++.....+             -..+++..+-.   .  +..+.+++++.+.+..|.+|-.|..|+.+
T Consensus       258 ~~~~~~~~~~~~~-------------~~~~v~~~~~~---~--l~~vp~~~~~~~~l~~~~~~~~H~~~v~~  311 (498)
T KOG2118|consen  258 MNLLRLLQVEVPL-------------EPLPVSESALL---R--LPLVPENMPLLDLLNEFQKGKSHMAVVRN  311 (498)
T ss_pred             hhhhhhhcccccc-------------ccccchhhhcc---c--cccCCCcccHHHHHHHHhhhhceeEEEec
Confidence            3335555432111             12356666642   2  56689999999999999976666666444

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=81.56  E-value=2.9  Score=37.82  Aligned_cols=43  Identities=16%  Similarity=0.214  Sum_probs=36.1

Q ss_pred             EcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           43 VPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        43 v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      +.....-.+|+..+...+...+||+|++                      ++++|.++..|++.+
T Consensus       266 ~~~~~~~~~~ls~~~~~~~~~~~Vvd~~----------------------g~~~G~vt~~~l~~~  308 (309)
T COG1125         266 LLEGFVDRDALSDFLARGRSVLPVVDED----------------------GRPLGTVTRADLLDE  308 (309)
T ss_pred             cccchhhHHHHHHHHhcCCceeEEECCC----------------------CcEeeEEEHHHHhhh
Confidence            3345566779999999999999999986                      699999999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-28
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	4e-06
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-23
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-05
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	5e-23
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	3e-04
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-08
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	8e-05
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	3e-04
3ddj_A	296	CBS domain-containing protein; structural genomics	5e-07

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score =  109 bits (274), Expect = 2e-28
 Identities = 52/252 (20%), Positives = 95/252 (37%), Gaps = 31/252 (12%)

Query: 10  ISSAGKHAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAP 69
           +    K A  E Q  +R     D+     R++    T  +  +++ L  N +V+ P+   
Sbjct: 4   VQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPL--- 60

Query: 70  PGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMS 129
                        +S+         + G+LTM D +  I    Q +   +A  ++DK   
Sbjct: 61  ------------WDSEANK------FAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRL 102

Query: 130 APVSSIIGHCP-EGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESA 188
             +  +             + P  S++D     SK   R +  +D   E  S + +    
Sbjct: 103 LGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIV---- 158

Query: 189 SSYQMLTQMDLLRFMMNHASELKDITSHSIRELG-ALNENVFAITESTKVIDAIKCMRAA 247
               +LTQ  +L+F+  +  E   +    + ++      N+   +  TKV D IK +   
Sbjct: 159 ---SVLTQYRILKFISMNCKETAML-RVPLNQMTIGTWSNLATASMETKVYDVIKMLAEK 214

Query: 248 LLHAVPIVKSSG 259
            + AVPIV S G
Sbjct: 215 NISAVPIVNSEG 226

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 33/243 (13%), Positives = 81/243 (33%), Gaps = 44/243 (18%)

Query: 19  DENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGG 78
           D+ + L      R + A     + V    SL     A+  ++   +P+            
Sbjct: 98  DKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLI----------- 146

Query: 79  SMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGH 138
                 D       +  + +LT   IL  I      + +      L   ++         
Sbjct: 147 ------DVDGETGSEMIVSVLTQYRILKFI------SMNCKETAMLRVPLNQMTIGTWS- 193

Query: 139 CPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQ-MLTQM 197
                +L T S  T + D +++ ++             +NIS V +V S  +   +   +
Sbjct: 194 -----NLATASMETKVYDVIKMLAE-------------KNISAVPIVNSEGTLLNVYESV 235

Query: 198 DLLRFMMNHASELKDIT-SHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVK 256
           D++  + +      D++   ++ +  A  + V     + ++      ++ + +H + +V 
Sbjct: 236 DVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD 295

Query: 257 SSG 259
            + 
Sbjct: 296 ENL 298

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 96.2 bits (239), Expect = 2e-23
 Identities = 49/258 (18%), Positives = 90/258 (34%), Gaps = 40/258 (15%)

Query: 6   EQDPISSAGKHAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVP 65
           E +      +  +      ++  +  DL     ++V    +  +     ALV N V A P
Sbjct: 13  ENEHSQETPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAP 72

Query: 66  VAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLD 125
           +                +S KQ+      ++GMLT+ D +  +    +         +  
Sbjct: 73  L---------------WDSKKQS------FVGMLTITDFINILHRYYKSALVQIYELEEH 111

Query: 126 KKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSK-GIHRALVPMDSRMENISGVEL 184
           K  +     +         L  +SPN S+ D +    +  IHR  V +D    N      
Sbjct: 112 KIETWREVYLQDSFKP---LVCISPNASLFDAVSSLIRNKIHRLPV-IDPESGNTLY--- 164

Query: 185 VESASSYQMLTQMDLLRFMMNHASELK--DITSHSIRELGAL-NENVFAITESTKVIDAI 241
                   +LT   +L+F+    +E    +  S S+ EL      N+  +  +T V  A+
Sbjct: 165 --------ILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVAL 216

Query: 242 KCMRAALLHAVPIVKSSG 259
                  + A+P+V   G
Sbjct: 217 GIFVQHRVSALPVVDEKG 234

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 32/255 (12%), Positives = 83/255 (32%), Gaps = 45/255 (17%)

Query: 7   QDPISSAGKHAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPV 66
                SA     +  +  +   +   L    + +V +   ASL   +++L+ NK+  +PV
Sbjct: 95  HRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPV 154

Query: 67  AAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDK 126
                             D ++G      + +LT   IL  +     +  ++    +   
Sbjct: 155 I-----------------DPESGNT----LYILTHKRILKFLK----LFITEFPKPEF-- 187

Query: 127 KMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVE 186
            MS  +  +        ++  +   T +   + +F +               +S + +V+
Sbjct: 188 -MSKSLEELQIGTYA--NIAMVRTTTPVYVALGIFVQ-------------HRVSALPVVD 231

Query: 187 SASSYQ-MLTQMDLLRFMMNHASELKDIT-SHSIRELGALNENVFAITESTKVIDAIKCM 244
                  + ++ D++           D++ + +++      E V        +   I  +
Sbjct: 232 EKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRL 291

Query: 245 RAALLHAVPIVKSSG 259
             A +H + +V    
Sbjct: 292 VEAEVHRLVVVDEHD 306

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 94.6 bits (235), Expect = 5e-23
 Identities = 40/260 (15%), Positives = 94/260 (36%), Gaps = 32/260 (12%)

Query: 1   MQQTKEQDPISSAGKHAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANK 60
                 Q+ +S   + A +  ++ L      D+     R++ +  +  +  ++N L+ N 
Sbjct: 3   KPTQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNS 62

Query: 61  VVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDA 120
           +V+ P+                +S          + G+LT  D +  I      +  D  
Sbjct: 63  IVSAPL---------------WDSKTSR------FAGLLTTTDFINVIQ--YYFSNPDKF 99

Query: 121 PDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILD-CMEVFSKGIHRALVPMDSRMENI 179
                 ++            + L   ++ P+  + + C+++      R  + +D   E  
Sbjct: 100 ELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPL-IDQDEETH 158

Query: 180 SGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVID 239
             + +        +LTQ  +L+F+  +  E   +            +N+ +   +T VID
Sbjct: 159 REIVV-------SVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVID 211

Query: 240 AIKCMRAALLHAVPIVKSSG 259
            I+ +    + +VPI+  +G
Sbjct: 212 VIQMLTQGRVSSVPIIDENG 231

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 25/219 (11%), Positives = 73/219 (33%), Gaps = 44/219 (20%)

Query: 43  VPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTML 102
           +  +  L      ++ ++   +P+                  D+     R+  + +LT  
Sbjct: 127 IHPSRPLFEACLKMLESRSGRIPLI-----------------DQDEETHREIVVSVLTQY 169

Query: 103 DILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS 162
            IL  +A + +              +  P+  +     +  ++ +    T ++D +++ +
Sbjct: 170 RILKFVALNCRET----------HFLKIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLT 217

Query: 163 KGIHRALVPMDSRMENISGVELVESASSYQ-MLTQMDLLRFMMNHASELKDIT-SHSIRE 220
           +               +S V +++       +    D+L  +         ++   ++  
Sbjct: 218 Q-------------GRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR 264

Query: 221 LGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG 259
                E V+  T++ K+   +  +R A +H   +V   G
Sbjct: 265 RSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG 303

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 38/228 (16%), Positives = 84/228 (36%), Gaps = 48/228 (21%)

Query: 29  KVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQT 88
            ++      ++IV V  T ++   +  +  NK   +PV                  +   
Sbjct: 5   VMKIAQ--NKKIVTVYPTTTIRKALMTMNENKYRRLPVV-----------------NAGN 45

Query: 89  GAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPD-DLDKKMSAPVSSIIGHCPEGLSLWT 147
             V    +G++T +DI+  + G  + N   +  + +    ++ PV  I+       ++ T
Sbjct: 46  NKV----VGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEE-----NVIT 96

Query: 148 LSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA 207
           L  N  I + +E F          ++   + IS            ++T+ D++R +++  
Sbjct: 97  LKENADIDEAIETFLTKNVGGAPIVNDENQLIS------------LITERDVIRALLDKI 144

Query: 208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIV 255
            E + I  +  R       +V   T   ++ D  + M       +P+V
Sbjct: 145 DENEVIDDYITR-------DVIVATPGERLKDVARTMVRNGFRRLPVV 185

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 19/121 (15%)

Query: 147 TLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH 206
           T+ P T+I   +   ++  +R L  +++    + G           ++T MD++ FM   
Sbjct: 16  TVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVG-----------IITSMDIVDFMGGG 64

Query: 207 ASELKDITSHSIRELGALNE--------NVFAITESTKVIDAIKCMRAALLHAVPIVKSS 258
           +        H    L A+NE        NV  + E+  + +AI+      +   PIV   
Sbjct: 65  SKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDE 124

Query: 259 G 259
            
Sbjct: 125 N 125

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 30/247 (12%), Positives = 69/247 (27%), Gaps = 63/247 (25%)

Query: 19  DENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGG 78
           + N        VR++   +  ++ +   A +   +   +   V   P+     Q      
Sbjct: 75  ERNFLAAINEPVREIM--EENVITLKENADIDEAIETFLTKNVGGAPIVNDENQ------ 126

Query: 79  SMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGH 138
                            I ++T  D++  +          D  + +D  ++  V      
Sbjct: 127 ----------------LISLITERDVIRALLDKI------DENEVIDDYITRDVI----- 159

Query: 139 CPEGLSLWTLSPNTSILDCMEVFSK-GIHRALVPMDSRMENISGVELVESASSYQMLTQM 197
                     +P   + D      + G  R  V  + R+  I              +T  
Sbjct: 160 --------VATPGERLKDVARTMVRNGFRRLPVVSEGRLVGI--------------ITST 197

Query: 198 DLLRFMMNHASELKDITSHSIRELGAL-----NENVFAITESTKVIDAIKCMRAALLHAV 252
           D ++ + +  +     T +               +V    E  K+    + M    + A+
Sbjct: 198 DFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGAL 257

Query: 253 PIVKSSG 259
           P+V  + 
Sbjct: 258 PVVDENL 264

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 25/243 (10%), Positives = 61/243 (25%), Gaps = 58/243 (23%)

Query: 19  DENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGG 78
                  +   +  L    +    +     L      +    +  + V            
Sbjct: 11  HHENLYFQGMNIETLM--IKNPPILSKEDRLGSAFKKINEGGIGRIIV------------ 56

Query: 79  SMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGH 138
                         +   G+LT  D+L+ +    +      +  DL    + P+   +  
Sbjct: 57  ------------ANEKIEGLLTTRDLLSTVESYCK---DSCSQGDLYHISTTPIIDYMTP 101

Query: 139 CPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMD 198
            P      T+   +     + +       +L  +D   +   G+           +T+ +
Sbjct: 102 NPV-----TVYNTSDEFTAINIMVTRNFGSLPVVDIN-DKPVGI-----------VTERE 144

Query: 199 LLRFMMNHASELK--DITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVK 256
            L    +           S            V  I +  ++  A+K M       +P++ 
Sbjct: 145 FLLLYKDLDEIFPVKVFMS----------TKVQTIYKEVRLDQAVKLMLRRGFRRLPVID 194

Query: 257 SSG 259
              
Sbjct: 195 DDN 197

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.91
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.9
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.89
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.87
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.86
3ddj_A	296	CBS domain-containing protein; structural genomics	99.86
3ddj_A	296	CBS domain-containing protein; structural genomics	99.86
4esy_A	170	CBS domain containing membrane protein; structural	99.83
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.82
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.81
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.81
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.79
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.78
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.77
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.76
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.76
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.75
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.75
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.75
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.74
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.74
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.73
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.73
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.73
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.72
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.72
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.71
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.71
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.7
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.7
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.7
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.69
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.69
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.69
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.69
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.69
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.67
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.67
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.67
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.67
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.67
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.66
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.66
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.66
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.66
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.65
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.65
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.64
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.62
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.62
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.62
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.59
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.56
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.54
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.5
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.48
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.48
4esy_A	170	CBS domain containing membrane protein; structural	99.47
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.45
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.42
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.39
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.38
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.37
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.37
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.37
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.36
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.36
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.35
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.35
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.33
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.32
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.32
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.31
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.31
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.31
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.31
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.3
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.29
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.29
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.29
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.29
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.28
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.28
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.27
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.26
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.25
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.25
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.25
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.24
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.23
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.22
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.22
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.22
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.21
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.21
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.21
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.19
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.18
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.17
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.16
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.13
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.13
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.11
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.09
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.06
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.02
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.02
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.95
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.91
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.9
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.89
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.86
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.85
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.82
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.76
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.75
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.65
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.55
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.53
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.44
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.39
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.38
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.37
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.34
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.26
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.2
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.17
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.03

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.91  E-value=3.4e-24  Score=192.72  Aligned_cols=208  Identities=18%  Similarity=0.242  Sum_probs=154.8

Q ss_pred             hHHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEE
Q 046022           18 ADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIG   97 (262)
Q Consensus        18 ~~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vG   97 (262)
                      .....+||.+++|+|+|..+.++++++.++|+.+|++.|.+++++++|||++++                     ++++|
T Consensus        20 ~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~---------------------~~lvG   78 (323)
T 3t4n_C           20 VESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKT---------------------SRFAG   78 (323)
T ss_dssp             HHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTT---------------------TEEEE
T ss_pred             HHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCC---------------------CeEEE
Confidence            344568899999999999888999999999999999999999999999999752                     59999


Q ss_pred             EEeHHHHHHHHhCCCCCCCCCCCcchHHhhhcccccccccc---CCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecC
Q 046022           98 MLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGH---CPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMD  173 (262)
Q Consensus        98 ivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~---~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~  173 (262)
                      ++|..|++.++......  . .............+.++|..   ....  ++++.+++++.+|++.|. ++++++||+.+
T Consensus        79 ilt~~Dl~~~l~~~~~~--~-~~~~~l~~~~~~~v~~i~~~~~~~~~~--~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~  153 (323)
T 3t4n_C           79 LLTTTDFINVIQYYFSN--P-DKFELVDKLQLDGLKDIERALGVDQLD--TASIHPSRPLFEACLKMLESRSGRIPLIDQ  153 (323)
T ss_dssp             EECHHHHHHHHHHHHHC--G-GGGGGGGGCBHHHHHHHHHHTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEE
T ss_pred             EEEHHHHHHHHHHHHcC--c-chhHHHHHHHHHHHHHHHHHhCCCCCC--ceEeCCCCcHHHHHHHHHhCCeeEEEEEec
Confidence            99999999877521000  0 00001111111233444310   0012  578999999999999998 79999999643


Q ss_pred             CCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc-cCcCeEEEeCCCcHHHHHHHHHhCCCcEE
Q 046022          174 SRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA-LNENVFAITESTKVIDAIKCMRAALLHAV  252 (262)
Q Consensus       174 ~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~-~~~~v~tv~~~~~~~~A~~lM~~~~isav  252 (262)
                      ++..        +....+|+||++||++++..+... ......+++++++ |+++++++.+++++.+|+++|.+++++++
T Consensus       154 ~~~~--------~~~~l~Givt~~di~~~l~~~~~~-~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~  224 (323)
T 3t4n_C          154 DEET--------HREIVVSVLTQYRILKFVALNCRE-THFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSV  224 (323)
T ss_dssp             CTTT--------CCEEEEEEEEHHHHHHHHHHHCGG-GGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEE
T ss_pred             CCCC--------CccceEEEecHHHHHHHHHhcCCc-hhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEE
Confidence            2210        000156999999999999876543 4455678888655 56889999999999999999999999999


Q ss_pred             EEEcCCCC
Q 046022          253 PIVKSSGA  260 (262)
Q Consensus       253 ~VVd~~g~  260 (262)
                      ||||++|.
T Consensus       225 pVvd~~~~  232 (323)
T 3t4n_C          225 PIIDENGY  232 (323)
T ss_dssp             EEECTTCB
T ss_pred             EEECCCCe
Confidence            99998774

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.90  E-value=5.2e-23  Score=185.71  Aligned_cols=206  Identities=21%  Similarity=0.283  Sum_probs=159.1

Q ss_pred             cchHHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeE
Q 046022           16 HAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHY   95 (262)
Q Consensus        16 ~~~~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~   95 (262)
                      .+...++.||.+.+|+|+|+.+++++++++++|+.+|++.|.+++++++||++.++                     +++
T Consensus        23 ~~~~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~---------------------~~~   81 (330)
T 2v8q_E           23 SNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKK---------------------QSF   81 (330)
T ss_dssp             CCSCHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTT---------------------TEE
T ss_pred             hhhHHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCC---------------------CeE
Confidence            34556788999999999997677899999999999999999999999999998752                     589


Q ss_pred             EEEEeHHHHHHHHhCCC---CCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEee
Q 046022           96 IGMLTMLDILAHIAGDD---QMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVP  171 (262)
Q Consensus        96 vGivs~~Dil~~l~~~~---~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~  171 (262)
                      +|+|+..|++.++....   .....+...... +.+..+++++|..   .  ++++.+++++.+|+++|. ++++++||+
T Consensus        82 vGivt~~Dll~~l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~im~~---~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vv  155 (330)
T 2v8q_E           82 VGMLTITDFINILHRYYKSALVQIYELEEHKI-ETWREVYLQDSFK---P--LVCISPNASLFDAVSSLIRNKIHRLPVI  155 (330)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBH-HHHHHHHSSSSCC---C--CCCBCTTSBHHHHHHHHHHHTCSCEEEE
T ss_pred             EEEEEHHHHHHHHHHHHhccccchhHHhhccH-HHHHHHHhhcccC---C--ceEeCCCCCHHHHHHHHHHCCCCeEEEE
Confidence            99999999998765310   000000000011 1123356677862   3  578999999999999998 799999996


Q ss_pred             cCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc--chhhhccccchhcccC-cCeEEEeCCCcHHHHHHHHHhCC
Q 046022          172 MDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE--LKDITSHSIRELGALN-ENVFAITESTKVIDAIKCMRAAL  248 (262)
Q Consensus       172 ~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~--l~~l~~~ti~eL~~~~-~~v~tv~~~~~~~~A~~lM~~~~  248 (262)
                       +++.           ++.+|+||++||++++..+.+.  ...+..++++++.+++ ++++++.+++++.+|+++|.+++
T Consensus       156 -d~~~-----------~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~  223 (330)
T 2v8q_E          156 -DPES-----------GNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHR  223 (330)
T ss_dssp             -CTTT-----------CCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHC
T ss_pred             -eCCC-----------CcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcC
Confidence             4211           2346999999999999875432  2345567888887787 78999999999999999999999


Q ss_pred             CcEEEEEcCCCC
Q 046022          249 LHAVPIVKSSGA  260 (262)
Q Consensus       249 isav~VVd~~g~  260 (262)
                      ++++||+|++|.
T Consensus       224 ~~~~~Vvd~~~~  235 (330)
T 2v8q_E          224 VSALPVVDEKGR  235 (330)
T ss_dssp             CSEEEEECTTSB
T ss_pred             CCeEEEECCCCc
Confidence            999999997763

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.89  E-value=8.3e-23  Score=184.49  Aligned_cols=208  Identities=23%  Similarity=0.274  Sum_probs=152.7

Q ss_pred             chHHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEE
Q 046022           17 AADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYI   96 (262)
Q Consensus        17 ~~~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~v   96 (262)
                      ....+.+|+.+.+|+|+|+.+.+++++++++|+.+|++.|.+++++++||++.+.                     ++++
T Consensus        11 ~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~---------------------~~~v   69 (334)
T 2qrd_G           11 ALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA---------------------NKFA   69 (334)
T ss_dssp             HHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTT---------------------TEEE
T ss_pred             HHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCC---------------------CeEE
Confidence            3445578899999999998777899999999999999999999999999998642                     6899


Q ss_pred             EEEeHHHHHHHHhCCCCCCCCCCCcchHHhhhcccc-------ccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCee
Q 046022           97 GMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPV-------SSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRA  168 (262)
Q Consensus        97 Givs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V-------~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv  168 (262)
                      |+|+..|++.++.....-.   .....+......++       +++|.. +..  ++++.+++++.++++.|. ++++++
T Consensus        70 Giv~~~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~im~~-~~~--~~~v~~~~~~~~a~~~~~~~~~~~~  143 (334)
T 2qrd_G           70 GLLTMADFVNVIKYYYQSS---SFPEAIAEIDKFRLLGLREVERKIGAI-PPE--TIYVHPMHSLMDACLAMSKSRARRI  143 (334)
T ss_dssp             EEECHHHHHHHHHHHHHHC---SCGGGGGGGGSCBHHHHHHHHHHHTCS-CSS--CCCBCTTSBHHHHHHHHHHSCCSEE
T ss_pred             EEEEHHHHHHHHHHHhhcc---CCccHHHHHhhhchhhHHHHHHhhccC-CCc--eeeeCCCCcHHHHHHHHHHCCceEE
Confidence            9999999998764210000   00000000001122       334542 111  377999999999999998 799999


Q ss_pred             EeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhc-ccCcCeEEEeCCCcHHHHHHHHHhC
Q 046022          169 LVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELG-ALNENVFAITESTKVIDAIKCMRAA  247 (262)
Q Consensus       169 ~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~-~~~~~v~tv~~~~~~~~A~~lM~~~  247 (262)
                      ||+.+.+. +       ++...+|+||++||++++..+.... .....++++++ +|+++++++++++++.+|+++|.++
T Consensus       144 ~Vvd~~~~-~-------~~~~~~Givt~~dl~~~~~~~~~~~-~~~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~  214 (334)
T 2qrd_G          144 PLIDVDGE-T-------GSEMIVSVLTQYRILKFISMNCKET-AMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEK  214 (334)
T ss_dssp             EEEEEETT-T-------TEEEEEEEEEHHHHHHHHHHHCGGG-GGCCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHH
T ss_pred             EEEeCCCC-c-------CccceEEEeeHHHHHHHHHhhccch-hhhhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHc
Confidence            99643211 1       0011469999999999998754322 23456788865 4788999999999999999999999


Q ss_pred             CCcEEEEEcCCCC
Q 046022          248 LLHAVPIVKSSGA  260 (262)
Q Consensus       248 ~isav~VVd~~g~  260 (262)
                      +++++||+|++|.
T Consensus       215 ~~~~~~Vvd~~~~  227 (334)
T 2qrd_G          215 NISAVPIVNSEGT  227 (334)
T ss_dssp             TCSEEEEECTTCB
T ss_pred             CCcEEEEEcCCCc
Confidence            9999999998763

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.87  E-value=2.4e-21  Score=169.61  Aligned_cols=175  Identities=15%  Similarity=0.316  Sum_probs=144.4

Q ss_pred             cceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022           27 EAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA  106 (262)
Q Consensus        27 ~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~  106 (262)
                      +.+++++|.  ++++++++++++.+|++.|.++++.++||+|++                      ++++|+++..|+++
T Consensus        83 ~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----------------------~~~~Givt~~dl~~  138 (280)
T 3kh5_A           83 NEPVREIME--ENVITLKENADIDEAIETFLTKNVGGAPIVNDE----------------------NQLISLITERDVIR  138 (280)
T ss_dssp             TSBGGGTSB--CSCCCEETTCBHHHHHHHHHHTTCSEEEEECTT----------------------CBEEEEEEHHHHHH
T ss_pred             hhhHHHhcC--CCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCC----------------------CEEEEEEEHHHHHH
Confidence            568999995  477899999999999999999999999999865                      68999999999999


Q ss_pred             HHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceec
Q 046022          107 HIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELV  185 (262)
Q Consensus       107 ~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~  185 (262)
                      ++.....              ...+++++|..   +  +.++.+++++.++++.|. ++++++||+ +++          
T Consensus       139 ~~~~~~~--------------~~~~v~~~m~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~----------  188 (280)
T 3kh5_A          139 ALLDKID--------------ENEVIDDYITR---D--VIVATPGERLKDVARTMVRNGFRRLPVV-SEG----------  188 (280)
T ss_dssp             HHGGGSC--------------TTCBSGGGCBC---S--CCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETT----------
T ss_pred             HHhhcCC--------------CCCCHHHHhCC---C--CeEECCCCcHHHHHHHHHHcCCCEEEEE-ECC----------
Confidence            8774211              12478999972   3  578999999999999998 799999997 422          


Q ss_pred             ccCCeeeEecHHHHHHHHHhhc-------ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCC
Q 046022          186 ESASSYQMLTQMDLLRFMMNHA-------SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSS  258 (262)
Q Consensus       186 ~~~~~~giITqsDIir~L~~~~-------~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~  258 (262)
                         +.+|+||.+||++++....       +........+++++  |+++++++++++++.+|+++|.+++++++||+|++
T Consensus       189 ---~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~  263 (280)
T 3kh5_A          189 ---RLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEI--MKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDEN  263 (280)
T ss_dssp             ---EEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHHH--SBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTT
T ss_pred             ---EEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcHHHH--hcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC
Confidence               3359999999999986432       11223356677774  88999999999999999999999999999999988


Q ss_pred             CC
Q 046022          259 GA  260 (262)
Q Consensus       259 g~  260 (262)
                      |.
T Consensus       264 g~  265 (280)
T 3kh5_A          264 LR  265 (280)
T ss_dssp             CB
T ss_pred             Ce
Confidence            64

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.86  E-value=2.1e-21  Score=169.97  Aligned_cols=183  Identities=21%  Similarity=0.400  Sum_probs=141.6

Q ss_pred             eeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHH
Q 046022           29 KVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHI  108 (262)
Q Consensus        29 ~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l  108 (262)
                      ++++++. +++++++++++|+.+|+++|.++++.++||+++++                     ++++|++|..||+.++
T Consensus         4 ~v~~~i~-~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~---------------------~~~~Givt~~di~~~~   61 (280)
T 3kh5_A            4 RVMKIAQ-NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGN---------------------NKVVGIITSMDIVDFM   61 (280)
T ss_dssp             BGGGTSC-CSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTT---------------------CBEEEEEEHHHHHHHT
T ss_pred             hHHHHhc-CCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCC---------------------CeEEEEEEHHHHHHHh
Confidence            5566653 34789999999999999999999999999999632                     6899999999999987


Q ss_pred             hCCCCCCC-CCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          109 AGDDQMNG-SDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       109 ~~~~~l~~-~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      ........ .......+...+..+|+++|..   +  +.++.+++++.+|++.|. ++++++||+ ++.           
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~---~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vv-d~~-----------  124 (280)
T 3kh5_A           62 GGGSKYNLIREKHERNFLAAINEPVREIMEE---N--VITLKENADIDEAIETFLTKNVGGAPIV-NDE-----------  124 (280)
T ss_dssp             TTSGGGHHHHTTSTTCHHHHTTSBGGGTSBC---S--CCCEETTCBHHHHHHHHHHTTCSEEEEE-CTT-----------
T ss_pred             cccchhhhhhhccccchhHHhhhhHHHhcCC---C--CEEECCCCCHHHHHHHHHhCCCCEEEEE-cCC-----------
Confidence            54211100 0001112233446799999973   3  578999999999999998 799999996 322           


Q ss_pred             cCCeeeEecHHHHHHHHHhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          187 SASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                       ++.+|++|+.|+++++......     ..++++  +|+++++++++++++.+|++.|.+++++++||+ ++|
T Consensus       125 -~~~~Givt~~dl~~~~~~~~~~-----~~~v~~--~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~  188 (280)
T 3kh5_A          125 -NQLISLITERDVIRALLDKIDE-----NEVIDD--YITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEG  188 (280)
T ss_dssp             -CBEEEEEEHHHHHHHHGGGSCT-----TCBSGG--GCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETT
T ss_pred             -CEEEEEEEHHHHHHHHhhcCCC-----CCCHHH--HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECC
Confidence             2346999999999998765321     236776  488899999999999999999999999999999 444

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.86  E-value=1.2e-21  Score=174.11  Aligned_cols=182  Identities=13%  Similarity=0.200  Sum_probs=147.0

Q ss_pred             hhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022           24 LLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD  103 (262)
Q Consensus        24 ~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D  103 (262)
                      .....+|+|+|..  +++++++++|+.+|++.|.++++.++||++ +                       +++|++|..|
T Consensus        16 ~~~~~~V~dim~~--~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~-----------------------~l~GivT~~D   69 (296)
T 3ddj_A           16 YFQGMNIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVAN-E-----------------------KIEGLLTTRD   69 (296)
T ss_dssp             TTCCSSGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEES-S-----------------------SEEEEEEHHH
T ss_pred             hhcccCHHHhccC--CCcEECCCccHHHHHHHHHHCCCceEEEEC-C-----------------------eEEEEEeHHH
Confidence            4567789999964  678999999999999999999999999998 3                       7999999999


Q ss_pred             HHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          104 ILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       104 il~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      |+.++......   ......+.+....+|+++|..   +  ++++.+++++.+|+++|. ++++++||+ +++       
T Consensus        70 i~~~~~~~~~~---~~~~~~~~~~~~~~v~~im~~---~--~~~v~~~~~~~~a~~~m~~~~~~~lpVv-d~~-------  133 (296)
T 3ddj_A           70 LLSTVESYCKD---SCSQGDLYHISTTPIIDYMTP---N--PVTVYNTSDEFTAINIMVTRNFGSLPVV-DIN-------  133 (296)
T ss_dssp             HHGGGTTCC------CCHHHHHHHHTSBGGGTSEE---S--CCCEETTSCHHHHHHHHHHHTCSEEEEE-CTT-------
T ss_pred             HHHHhcccccc---cccchhhHHHhcccHHHhccC---C--CEEEcCCCCHHHHHHHHHHcCCCEEEEE-cCC-------
Confidence            99988653211   111223334457799999973   3  578999999999999998 799999996 322       


Q ss_pred             eecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          183 ELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                           ++.+|+||..|+++++....      ...+++++  |+++++++.+++++.+|+++|.+++++++||+|++|.
T Consensus       134 -----~~lvGivt~~dl~~~~~~~~------~~~~v~~~--m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~  198 (296)
T 3ddj_A          134 -----DKPVGIVTEREFLLLYKDLD------EIFPVKVF--MSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNK  198 (296)
T ss_dssp             -----SCEEEEEEHHHHGGGGGGSC------CCCBHHHH--SBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred             -----CcEEEEEeHHHHHHhhhccc------ccccHHHh--hcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCE
Confidence                 23469999999998775432      23477774  8889999999999999999999999999999998774

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.86  E-value=2.1e-21  Score=172.46  Aligned_cols=176  Identities=16%  Similarity=0.222  Sum_probs=144.8

Q ss_pred             hcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHH
Q 046022           26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDIL  105 (262)
Q Consensus        26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil  105 (262)
                      ...+++++|..  +++++++++++.+|++.|.++++.++||+|++                      ++++|+++..|++
T Consensus        91 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~----------------------~~lvGivt~~dl~  146 (296)
T 3ddj_A           91 STTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN----------------------DKPVGIVTEREFL  146 (296)
T ss_dssp             HTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTT----------------------SCEEEEEEHHHHG
T ss_pred             hcccHHHhccC--CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC----------------------CcEEEEEeHHHHH
Confidence            36789999963  67899999999999999999999999999864                      6899999999998


Q ss_pred             HHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccccccee
Q 046022          106 AHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVEL  184 (262)
Q Consensus       106 ~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~  184 (262)
                      .++....               ...+++++|..   +  +.++.+++++.+|++.|. ++++++||+ ++.         
T Consensus       147 ~~~~~~~---------------~~~~v~~~m~~---~--~~~v~~~~~l~~~~~~m~~~~~~~~~Vv-d~~---------  196 (296)
T 3ddj_A          147 LLYKDLD---------------EIFPVKVFMST---K--VQTIYKEVRLDQAVKLMLRRGFRRLPVI-DDD---------  196 (296)
T ss_dssp             GGGGGSC---------------CCCBHHHHSBC---S--CCCEETTSBHHHHHHHHHHHTCSEEEEE-CTT---------
T ss_pred             Hhhhccc---------------ccccHHHhhcC---C--CeEECCCCCHHHHHHHHHHcCCCEEEEE-cCC---------
Confidence            8765321               12479999972   3  578999999999999998 799999996 322         


Q ss_pred             cccCCeeeEecHHHHHHHHHhhcccc--hhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          185 VESASSYQMLTQMDLLRFMMNHASEL--KDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       185 ~~~~~~~giITqsDIir~L~~~~~~l--~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                         ++.+|+||.+||++++......+  ......+++++  |+++++++.+++++.+|+++|.++++.++||||++|.
T Consensus       197 ---~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~--m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~  269 (296)
T 3ddj_A          197 ---NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDV--MVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNT  269 (296)
T ss_dssp             ---SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHH--SBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred             ---CEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHHH--hCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCe
Confidence               23469999999999988544322  12345677774  8899999999999999999999999999999998774

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.83  E-value=4.6e-21  Score=157.83  Aligned_cols=145  Identities=19%  Similarity=0.308  Sum_probs=111.2

Q ss_pred             HHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEE
Q 046022           19 DENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGM   98 (262)
Q Consensus        19 ~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGi   98 (262)
                      ..+.+.+.+.+|+|+|.  ++++++++++|+.+|++.|.+++++++||+|++                      ++++|+
T Consensus         9 ~~~~~~l~~~~V~diM~--~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~----------------------g~lvGi   64 (170)
T 4esy_A            9 RAIARAIRQVPIRDILT--SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN----------------------GHLVGI   64 (170)
T ss_dssp             HHHHHHHHTSBGGGGCC--SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT----------------------SCEEEE
T ss_pred             HHHHHHHcCCCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC----------------------ccEEEE
Confidence            34567789999999995  478999999999999999999999999999875                      689999


Q ss_pred             EeHHHHHHHHhCCCCCC-----CCCCCcch----HHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCee
Q 046022           99 LTMLDILAHIAGDDQMN-----GSDDAPDD----LDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRA  168 (262)
Q Consensus        99 vs~~Dil~~l~~~~~l~-----~~~~~~~~----~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv  168 (262)
                      ||..||++++.......     ........    .......+++++|+.   +  ++++.++++|.+|+++|. +++|++
T Consensus        65 it~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~---~--~~tv~~~~~l~~a~~~m~~~~~~~l  139 (170)
T 4esy_A           65 ITESDFLRGSIPFWIYEASEILSRAIPAPEVEHLFETGRKLTASAVMTQ---P--VVTAAPEDSVGSIADQMRRHGIHRI  139 (170)
T ss_dssp             EEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBC---C--SCCBCTTSBHHHHHHHHHHTTCSEE
T ss_pred             EEHHHHHHHHhhccccchhhhhhhccchhhHHhhhccccccchhhhccc---C--cccCCcchhHHHHHHHHHHcCCcEE
Confidence            99999987655321000     00000000    112235789999983   3  688999999999999998 799999


Q ss_pred             EeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022          169 LVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       169 ~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                      ||+.+              |+++||||++||+++|...
T Consensus       140 pVvd~--------------g~lvGivt~~Dil~~l~~~  163 (170)
T 4esy_A          140 PVVQD--------------GVPVGIVTRRDLLKLLLLE  163 (170)
T ss_dssp             EEEET--------------TEEEEEEEHHHHTTTSCCC
T ss_pred             EEEEC--------------CEEEEEEEHHHHHHHHHhc
Confidence            99732              1335999999999988654

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.82  E-value=7.4e-20  Score=160.74  Aligned_cols=178  Identities=16%  Similarity=0.208  Sum_probs=133.5

Q ss_pred             hhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHH
Q 046022           25 LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDI  104 (262)
Q Consensus        25 l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Di  104 (262)
                      +.+.+++++|..  +++++++++++.+|++.|.++++..+||+|++                      ++++|++|..|+
T Consensus        57 ~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~----------------------~~~~Giit~~di  112 (282)
T 2yzq_A           57 PDEEQLAMLVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSK----------------------GKPVGILTVGDI  112 (282)
T ss_dssp             -------CCCBS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTT----------------------SCEEEEEEHHHH
T ss_pred             hccCCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC----------------------CEEEEEEEHHHH
Confidence            446789999953  56799999999999999999999999999864                      589999999999


Q ss_pred             HH-HHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          105 LA-HIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       105 l~-~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      +. ++.+..             .....+++++|..   +  ++++.+++++.++++.|. ++++++||+ ++.       
T Consensus       113 ~~~~~~~~~-------------~~~~~~v~~~m~~---~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vv-d~~-------  166 (282)
T 2yzq_A          113 IRRYFAKSE-------------KYKGVEIEPYYQR---Y--VSIVWEGTPLKAALKALLLSNSMALPVV-DSE-------  166 (282)
T ss_dssp             HHHTTTTCS-------------GGGGCBSTTTSBS---C--CCCEETTSBHHHHHHHHHTCSSSEEEEE-CTT-------
T ss_pred             HHHHHhccC-------------CcccCcHHHHhCC---C--CEEECCCCCHHHHHHHHHHcCCcEEEEE-cCC-------
Confidence            98 665421             1124578999962   3  578999999999999998 689999996 322       


Q ss_pred             eecccCCeeeEecHHHHH------HHHHhh---------------c-cc----chhhhccccchhcccCcCeEEEeCCCc
Q 046022          183 ELVESASSYQMLTQMDLL------RFMMNH---------------A-SE----LKDITSHSIRELGALNENVFAITESTK  236 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIi------r~L~~~---------------~-~~----l~~l~~~ti~eL~~~~~~v~tv~~~~~  236 (262)
                           ++.+|+||..|++      +++..+               . ..    .......++++  +|++++++++++++
T Consensus       167 -----~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--im~~~~~~v~~~~~  239 (282)
T 2yzq_A          167 -----GNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAE--IMTRDVIVATPHMT  239 (282)
T ss_dssp             -----SCEEEEEEGGGGGGCGGGCC--------------------------------CCCBGGG--TCBSSCCCBCTTSB
T ss_pred             -----CeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHH--hcCCCCceeCCCCC
Confidence                 2346999999999      766310               0 00    01224567777  59999999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEEcCCC
Q 046022          237 VIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       237 ~~~A~~lM~~~~isav~VVd~~g  259 (262)
                      +.+|+++|.+++++++||||++|
T Consensus       240 l~~a~~~m~~~~~~~lpVvd~~~  262 (282)
T 2yzq_A          240 VHEVALKMAKYSIEQLPVIRGEG  262 (282)
T ss_dssp             HHHHHHHHHHHTCSEEEEEETTT
T ss_pred             HHHHHHHHHHcCcceeEEECCCC
Confidence            99999999999999999999765

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.81  E-value=3.2e-20  Score=163.09  Aligned_cols=166  Identities=18%  Similarity=0.287  Sum_probs=119.4

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      ++|+|+|.  ++++++++++|+.+|++.|.++++.++||++++                      ++++|+++..|++..
T Consensus         1 m~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~----------------------~~~~Giv~~~dl~~~   56 (282)
T 2yzq_A            1 MRVKTIMT--QNPVTITLPATRNYALELFKKYKVRSFPVVNKE----------------------GKLVGIISVKRILVN   56 (282)
T ss_dssp             CBHHHHSE--ESCCCEESSCC------------CCEEEEECTT----------------------CCEEEEEESSCC---
T ss_pred             CchHHhcc--CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC----------------------CcEEEEEEHHHHHhh
Confidence            46889996  467899999999999999999999999999864                      689999999998755


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      +.                   ..+++++|..   .  +.++.+++++.+|++.|. ++.+++||+ ++.           
T Consensus        57 ~~-------------------~~~v~~~m~~---~--~~~v~~~~~l~~a~~~m~~~~~~~~~Vv-d~~-----------  100 (282)
T 2yzq_A           57 PD-------------------EEQLAMLVKR---D--VPVVKENDTLKKAAKLMLEYDYRRVVVV-DSK-----------  100 (282)
T ss_dssp             --------------------------CCCBS---C--CCEEETTSBHHHHHHHHHHHTCSEEEEE-CTT-----------
T ss_pred             hc-------------------cCCHHHHcCC---C--CcEECCCCcHHHHHHHHHHcCCCEEEEE-cCC-----------
Confidence            32                   2368899972   2  478999999999999998 799999996 322           


Q ss_pred             cCCeeeEecHHHHHH-HHHhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          187 SASSYQMLTQMDLLR-FMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       187 ~~~~~giITqsDIir-~L~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                       ++.+|+||+.|+++ ++... .   .....++++  +|+++++++.+++++.+|++.|.+++++++||+|++|.
T Consensus       101 -~~~~Giit~~di~~~~~~~~-~---~~~~~~v~~--~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~  168 (282)
T 2yzq_A          101 -GKPVGILTVGDIIRRYFAKS-E---KYKGVEIEP--YYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGN  168 (282)
T ss_dssp             -SCEEEEEEHHHHHHHTTTTC-S---GGGGCBSTT--TSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSC
T ss_pred             -CEEEEEEEHHHHHHHHHhcc-C---CcccCcHHH--HhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCe
Confidence             23469999999999 77653 1   112456776  48889999999999999999999999999999997763

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.81  E-value=2.8e-19  Score=160.59  Aligned_cols=179  Identities=15%  Similarity=0.232  Sum_probs=137.6

Q ss_pred             eccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHh
Q 046022           30 VRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIA  109 (262)
Q Consensus        30 v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~  109 (262)
                      +.++|  .++++++++++++.+|++.|.++++.++||++..+.               +  .+.+++|++|..|++.++.
T Consensus       116 ~~~~~--~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~---------------~--~~~~l~Givt~~di~~~l~  176 (323)
T 3t4n_C          116 ALGVD--QLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEE---------------T--HREIVVSVLTQYRILKFVA  176 (323)
T ss_dssp             HTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTT---------------T--CCEEEEEEEEHHHHHHHHH
T ss_pred             HhCCC--CCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCC---------------C--CccceEEEecHHHHHHHHH
Confidence            34445  357889999999999999999999999999986520               0  0124999999999999887


Q ss_pred             CCCCCCCCCCCcchHHhhhccccccc---cccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceec
Q 046022          110 GDDQMNGSDDAPDDLDKKMSAPVSSI---IGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELV  185 (262)
Q Consensus       110 ~~~~l~~~~~~~~~~~~~~~~~V~~i---m~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~  185 (262)
                      ....          .......+|+++   |..   +  ++++.+++++.+|+++|. ++++++||+ +++          
T Consensus       177 ~~~~----------~~~~~~~~v~~~~~~m~~---~--~~~v~~~~~~~~~~~~m~~~~~~~~pVv-d~~----------  230 (323)
T 3t4n_C          177 LNCR----------ETHFLKIPIGDLNIITQD---N--MKSCQMTTPVIDVIQMLTQGRVSSVPII-DEN----------  230 (323)
T ss_dssp             HHCG----------GGGGCCSBGGGTTCSBCT---T--CCCBCTTSBHHHHHHHHHHHTCSEEEEE-CTT----------
T ss_pred             hcCC----------chhhhhCcHHHcCCCCCC---C--cEEECCCCcHHHHHHHHHHcCCCEEEEE-CCC----------
Confidence            4210          123446689999   752   3  678999999999999998 799999996 322          


Q ss_pred             ccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcccCc------CeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          186 ESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNE------NVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       186 ~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~~~------~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                        ++.+|+||.+||++++.....   .....+++++  |++      +++++++++++.+|+++|.++++.++||||++|
T Consensus       231 --~~~~Giit~~dl~~~~~~~~~---~~~~~~v~~~--m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~  303 (323)
T 3t4n_C          231 --GYLINVYEAYDVLGLIKGGIY---NDLSLSVGEA--LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG  303 (323)
T ss_dssp             --CBEEEEEETTHHHHHHHTTHH---HHTTSBHHHH--GGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTS
T ss_pred             --CeEEEEEeHHHHHHHHhhchh---hhccCCHHHH--HhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCC
Confidence              234699999999999876431   1224567774  776      799999999999999999999999999999877


Q ss_pred             C
Q 046022          260 A  260 (262)
Q Consensus       260 ~  260 (262)
                      .
T Consensus       304 ~  304 (323)
T 3t4n_C          304 R  304 (323)
T ss_dssp             B
T ss_pred             c
Confidence            4

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.79  E-value=6.5e-19  Score=143.96  Aligned_cols=142  Identities=15%  Similarity=0.213  Sum_probs=111.7

Q ss_pred             hHHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEE
Q 046022           18 ADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIG   97 (262)
Q Consensus        18 ~~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vG   97 (262)
                      ..+++.|+.. +++++|++..+++++++++|+.+|+++|.+++++++||+|.+                      ++++|
T Consensus         6 ~~~~e~~l~~-~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~----------------------~~lvG   62 (156)
T 3k6e_A            6 AKEFETFLLG-QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE----------------------KQFVG   62 (156)
T ss_dssp             HHHHHHHHHT-TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-----------------------CBEEE
T ss_pred             HHHHHHHhhc-cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC----------------------CcEEE
Confidence            3455666654 799999887899999999999999999999999999999864                      68999


Q ss_pred             EEeHHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCeeEeecCCCCc
Q 046022           98 MLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRME  177 (262)
Q Consensus        98 ivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv~V~~~~~~~  177 (262)
                      +||..|++.++.....         ........+|+++|..   +  +.++.+++++.+|+++|.+. +.+||+ ++.  
T Consensus        63 iit~~Di~~~~~~~~~---------~~~~~~~~~v~~im~~---~--~~~v~~~~~l~~~~~~m~~~-~~lpVV-d~~--  124 (156)
T 3k6e_A           63 TIGLRDIMAYQMEHDL---------SQEIMADTDIVHMTKT---D--VAVVSPDFTITEVLHKLVDE-SFLPVV-DAE--  124 (156)
T ss_dssp             EEEHHHHHHHHHHHTC---------CHHHHTTSBGGGTCBC---S--CCCBCTTCCHHHHHHHTTTS-SEEEEE-CTT--
T ss_pred             EEEecchhhhhhhccc---------ccccccccCHHHhhcC---C--ceecccccHHHHHHHHHHHc-CCeEEE-ecC--
Confidence            9999999998875211         1223446799999973   3  57899999999999999842 458885 422  


Q ss_pred             ccccceecccCCeeeEecHHHHHHHHHhhcccc
Q 046022          178 NISGVELVESASSYQMLTQMDLLRFMMNHASEL  210 (262)
Q Consensus       178 ~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l  210 (262)
                                |+.+||||++||++.+....+.+
T Consensus       125 ----------g~l~GiiT~~Dil~~~~~~~~~~  147 (156)
T 3k6e_A          125 ----------GIFQGIITRKSILKAVNALLHDF  147 (156)
T ss_dssp             ----------SBEEEEEEHHHHHHHHHHHSCC-
T ss_pred             ----------CEEEEEEEHHHHHHHHHHHhccc
Confidence                      34469999999999997655443

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.78  E-value=5e-18  Score=153.05  Aligned_cols=176  Identities=16%  Similarity=0.251  Sum_probs=136.4

Q ss_pred             ccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCe----EEEEEeHHHHHH
Q 046022           31 RDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKH----YIGMLTMLDILA  106 (262)
Q Consensus        31 ~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~----~vGivs~~Dil~  106 (262)
                      +++|..+.+++++++++|+.+|++.|.++++..+||+++.+                     ++    ++|+++..||+.
T Consensus       110 ~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~---------------------~~~~~~~~Givt~~dl~~  168 (334)
T 2qrd_G          110 RKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDG---------------------ETGSEMIVSVLTQYRILK  168 (334)
T ss_dssp             HHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEET---------------------TTTEEEEEEEEEHHHHHH
T ss_pred             HhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCC---------------------CcCccceEEEeeHHHHHH
Confidence            34565444458999999999999999999999999998642                     23    999999999999


Q ss_pred             HHhCCCCCCCCCCCcchHHhhhccccccc---cccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          107 HIAGDDQMNGSDDAPDDLDKKMSAPVSSI---IGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       107 ~l~~~~~l~~~~~~~~~~~~~~~~~V~~i---m~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      ++.....         . ......+++++   |..   +  +.++.+++++.+|++.|. ++++++||+ ++.       
T Consensus       169 ~~~~~~~---------~-~~~~~~~v~~l~~~m~~---~--~~~v~~~~~~~~~~~~m~~~~~~~~~Vv-d~~-------  225 (334)
T 2qrd_G          169 FISMNCK---------E-TAMLRVPLNQMTIGTWS---N--LATASMETKVYDVIKMLAEKNISAVPIV-NSE-------  225 (334)
T ss_dssp             HHHHHCG---------G-GGGCCCBGGGSSCSBCS---S--CCCBCTTSBHHHHHHHHHHHTCSEEEEE-CTT-------
T ss_pred             HHHhhcc---------c-hhhhhCcHHHhCCcccC---C--ceEECCCCcHHHHHHHHHHcCCcEEEEE-cCC-------
Confidence            8864110         0 12235678885   652   3  578999999999999998 689999996 322       


Q ss_pred             eecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcccC------cCeEEEeCCCcHHHHHHHHHhCCCcEEEEEc
Q 046022          183 ELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALN------ENVFAITESTKVIDAIKCMRAALLHAVPIVK  256 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~~------~~v~tv~~~~~~~~A~~lM~~~~isav~VVd  256 (262)
                           ++.+|+||..||++++.....   .....+++++  |+      ++++++.+++++.+|+++|.++++..+||||
T Consensus       226 -----~~~~Giit~~dl~~~~~~~~~---~~~~~~v~~~--m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  295 (334)
T 2qrd_G          226 -----GTLLNVYESVDVMHLIQDGDY---SNLDLSVGEA--LLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD  295 (334)
T ss_dssp             -----CBEEEEEETHHHHHHHTTSCG---GGGGSBHHHH--HTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEEC
T ss_pred             -----CcEEEEEEHHHHHHHhhcccc---ccccCcHHHH--HhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEC
Confidence                 234699999999998865321   1124566664  66      3899999999999999999999999999999


Q ss_pred             CCCC
Q 046022          257 SSGA  260 (262)
Q Consensus       257 ~~g~  260 (262)
                      ++|.
T Consensus       296 ~~g~  299 (334)
T 2qrd_G          296 ENLK  299 (334)
T ss_dssp             TTCB
T ss_pred             CCCe
Confidence            8763

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.77  E-value=1.6e-18  Score=136.24  Aligned_cols=127  Identities=12%  Similarity=0.194  Sum_probs=102.6

Q ss_pred             hhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022           24 LLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD  103 (262)
Q Consensus        24 ~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D  103 (262)
                      .|.+.+|+|+|...++++++++++|+.+|++.|.++++.++||++.+.                     ++++|+|+..|
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~---------------------~~~~Givt~~d   60 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQK---------------------DNIIGFVHRLE   60 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSST---------------------TCEEEECCHHH
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC---------------------CcEEEEEEHHH
Confidence            367889999997667788999999999999999999999999998641                     58999999999


Q ss_pred             HHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          104 ILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       104 il~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      ++.++....               ...+++++|. .     +.++.+++++.+|++.|. ++++++||+ ++.       
T Consensus        61 l~~~~~~~~---------------~~~~v~~~m~-~-----~~~v~~~~~l~~~~~~m~~~~~~~~~Vv-d~~-------  111 (130)
T 3i8n_A           61 LFKMQQSGS---------------GQKQLGAVMR-P-----IQVVLNNTALPKVFDQMMTHRLQLALVV-DEY-------  111 (130)
T ss_dssp             HHHHHHTTT---------------TTSBHHHHSE-E-----CCEEETTSCHHHHHHHHHHHTCCEEEEE-CTT-------
T ss_pred             HHHHHhcCC---------------CcCCHHHHhc-C-----CcCcCCCCcHHHHHHHHHHcCCeEEEEE-cCC-------
Confidence            999877521               1347899995 1     468999999999999998 799999996 322       


Q ss_pred             eecccCCeeeEecHHHHHHHHHh
Q 046022          183 ELVESASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIir~L~~  205 (262)
                           |+.+|+||++||++++..
T Consensus       112 -----g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A          112 -----GTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             -----SCEEEEEEHHHHHHHHHT
T ss_pred             -----CCEEEEEEHHHHHHHHcC
Confidence                 244699999999999864

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.76  E-value=3.1e-18  Score=134.99  Aligned_cols=126  Identities=13%  Similarity=0.154  Sum_probs=102.6

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      .+|+|+|...++++++++++|+.+|++.|.++++.++||++.+.                     ++++|+|+..|++++
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~---------------------~~lvGivt~~dl~~~   60 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSL---------------------DDAISMLRVREAYRL   60 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSG---------------------GGEEEEEEHHHHHHH
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCC---------------------CcEEEEEEHHHHHHH
Confidence            57999997556789999999999999999999999999997531                     689999999999998


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      +.....+             ...++.++|.    +  +.++.+++++.+|+++|. ++++++||+ ++.           
T Consensus        61 ~~~~~~~-------------~~~~v~~~m~----~--~~~v~~~~~l~~~~~~m~~~~~~~~~Vv-d~~-----------  109 (130)
T 3hf7_A           61 MTEKKEF-------------TKEIMLRAAD----E--IYFVPEGTPLSTQLVKFQRNKKKVGLVV-DEY-----------  109 (130)
T ss_dssp             HTSSSCC-------------CHHHHHHHSB----C--CCEEETTCBHHHHHHHHHHHCCCEEEEE-CTT-----------
T ss_pred             HhccCcc-------------chhhHHHhcc----C--CeEeCCCCcHHHHHHHHHhcCCeEEEEE-cCC-----------
Confidence            8753211             1236888884    2  468999999999999998 799999996 322           


Q ss_pred             cCCeeeEecHHHHHHHHHhh
Q 046022          187 SASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~~~  206 (262)
                       |+.+||||.+||++.+...
T Consensus       110 -g~lvGiit~~Dil~~l~g~  128 (130)
T 3hf7_A          110 -GDIQGLVTVEDILEEIVGD  128 (130)
T ss_dssp             -SCEEEEEEHHHHHHHHHC-
T ss_pred             -CCEEEEeeHHHHHHHHhCC
Confidence             2346999999999998753

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.76  E-value=3.5e-18  Score=136.91  Aligned_cols=138  Identities=17%  Similarity=0.279  Sum_probs=110.0

Q ss_pred             HHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeH
Q 046022           22 QRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTM  101 (262)
Q Consensus        22 ~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~  101 (262)
                      ...|.+++|+|+|..+.+++++++++|+.+|++.|.++++.++||+|++                      ++++|+|+.
T Consensus         9 ~~~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~----------------------~~~~Givt~   66 (150)
T 3lqn_A            9 KDEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM----------------------YKLHGLIST   66 (150)
T ss_dssp             HHHHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT----------------------CBEEEEEEH
T ss_pred             HHhhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCC----------------------CCEEEEEEH
Confidence            4567899999999754568899999999999999999999999999865                      689999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccc
Q 046022          102 LDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENIS  180 (262)
Q Consensus       102 ~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~  180 (262)
                      .||+.++.....+        ........+|+++|..   +  +.++.+++++.+|+++|. +++  +||+ +++     
T Consensus        67 ~dl~~~~~~~~~~--------~~~~~~~~~v~~~m~~---~--~~~v~~~~~l~~a~~~~~~~~~--l~Vv-d~~-----  125 (150)
T 3lqn_A           67 AMILDGILGLERI--------EFERLEEMKVEQVMKQ---D--IPVLKLEDSFAKALEMTIDHPF--ICAV-NED-----  125 (150)
T ss_dssp             HHHHHHTBCSSSB--------CGGGGGGCBGGGTCBS---S--CCEEETTCBHHHHHHHHHHCSE--EEEE-CTT-----
T ss_pred             HHHHHHHHhhccc--------chhHHhcCCHHHHhcC---C--CceeCCCCCHHHHHHHHHhCCE--EEEE-CCC-----
Confidence            9999988753221        1223346789999972   3  578999999999999998 554  8886 422     


Q ss_pred             cceecccCCeeeEecHHHHHHHHHhhccc
Q 046022          181 GVELVESASSYQMLTQMDLLRFMMNHASE  209 (262)
Q Consensus       181 g~~~~~~~~~~giITqsDIir~L~~~~~~  209 (262)
                             |+.+|+||++||++++.+....
T Consensus       126 -------g~~~Giit~~dil~~l~~~~~~  147 (150)
T 3lqn_A          126 -------GYFEGILTRRAILKLLNKKVRQ  147 (150)
T ss_dssp             -------CBEEEEEEHHHHHHHHHHHC--
T ss_pred             -------CcEEEEEEHHHHHHHHHHHhHh
Confidence                   2446999999999999887643

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.75  E-value=1.2e-17  Score=135.62  Aligned_cols=142  Identities=16%  Similarity=0.208  Sum_probs=112.3

Q ss_pred             CcchHHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCe
Q 046022           15 KHAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKH   94 (262)
Q Consensus        15 ~~~~~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~   94 (262)
                      +.....+++.|..++|+|+|.  ++ +++++++|+.+|++.|.++++.++||+|++                      ++
T Consensus         4 ~~~~~~l~~~l~~~~v~~im~--~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~----------------------~~   58 (159)
T 3fv6_A            4 KTGTQLLADKLKKLQVKDFQS--IP-VVIHENVSVYDAICTMFLEDVGTLFVVDRD----------------------AV   58 (159)
T ss_dssp             ---CHHHHHHHTTCBGGGSCB--CC-CEEETTSBHHHHHHHHHHHTCSEEEEECTT----------------------SC
T ss_pred             CchHHHHHHHHhhCCHHHHcC--CC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCC----------------------Cc
Confidence            445567788999999999995  34 499999999999999999999999999864                      68


Q ss_pred             EEEEEeHHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecC
Q 046022           95 YIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMD  173 (262)
Q Consensus        95 ~vGivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~  173 (262)
                      ++|+|+..||+.++.....             ....+|.++|.. ..+  ++++.+++++.+|+++|. ++++++||+.+
T Consensus        59 ~~Givt~~dl~~~~~~~~~-------------~~~~~v~~~m~~-~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  122 (159)
T 3fv6_A           59 LVGVLSRKDLLRASIGQQE-------------LTSVPVHIIMTR-MPN--ITVCRREDYVMDIAKHLIEKQIDALPVIKD  122 (159)
T ss_dssp             EEEEEEHHHHHHHHTSCSC-------------TTTCBGGGTSEE-TTS--CCCBCTTSBHHHHHHHHHHHTCSEEEEEEE
T ss_pred             EEEEEeHHHHHHHhhccCc-------------ccCcCHHHHHcC-CCC--cEEECCCCCHHHHHHHHHHcCCcEEEEEeC
Confidence            9999999999998865321             124589999973 112  578999999999999998 79999999643


Q ss_pred             CCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          174 SRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       174 ~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ++..          .+.+|+||++||++++.+-.
T Consensus       123 ~g~~----------~~~vGiit~~dil~~l~~~~  146 (159)
T 3fv6_A          123 TDKG----------FEVIGRVTKTNMTKILVSLS  146 (159)
T ss_dssp             CSSS----------EEEEEEEEHHHHHHHHHHHH
T ss_pred             CCcc----------eeEEEEEEHHHHHHHHHHHh
Confidence            2100          03469999999999998754

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.75  E-value=1.2e-17  Score=133.89  Aligned_cols=126  Identities=17%  Similarity=0.297  Sum_probs=105.8

Q ss_pred             hhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHH
Q 046022           25 LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDI  104 (262)
Q Consensus        25 l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Di  104 (262)
                      +.+.+|+|+|....+++++++++|+.+|++.|.++++.++||++.+.                     ++++|+|+..|+
T Consensus        20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~---------------------~~lvGivt~~dl   78 (148)
T 3lv9_A           20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNK---------------------DDILGFVHIRDL   78 (148)
T ss_dssp             GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSST---------------------TSEEEEEEHHHH
T ss_pred             cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCC---------------------CcEEEEEEHHHH
Confidence            57889999997545788999999999999999999999999998641                     589999999999


Q ss_pred             HHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccce
Q 046022          105 LAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVE  183 (262)
Q Consensus       105 l~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~  183 (262)
                      +.++....                ..+++++|.    +  +.++.+++++.+|+++|. ++++++||+ ++.        
T Consensus        79 ~~~~~~~~----------------~~~v~~~m~----~--~~~v~~~~~l~~~~~~m~~~~~~~l~Vv-d~~--------  127 (148)
T 3lv9_A           79 YNQKINEN----------------KIELEEILR----D--IIYISENLTIDKALERIRKEKLQLAIVV-DEY--------  127 (148)
T ss_dssp             HHHHHHHS----------------CCCGGGTCB----C--CEEEETTSBHHHHHHHHHHHTCSEEEEE-CTT--------
T ss_pred             HHHHhcCC----------------CccHHHhcC----C--CeEECCCCCHHHHHHHHHhcCCeEEEEE-eCC--------
Confidence            98876411                457999993    2  578999999999999998 799999996 422        


Q ss_pred             ecccCCeeeEecHHHHHHHHHhh
Q 046022          184 LVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       184 ~~~~~~~~giITqsDIir~L~~~  206 (262)
                          |+.+|+||++||++++...
T Consensus       128 ----g~~~Giit~~dil~~l~~~  146 (148)
T 3lv9_A          128 ----GGTSGVVTIEDILEEIVGE  146 (148)
T ss_dssp             ----SSEEEEEEHHHHHHHHHHT
T ss_pred             ----CCEEEEEEHHHHHHHHhCc
Confidence                2446999999999998764

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.75  E-value=1.6e-17  Score=137.13  Aligned_cols=128  Identities=14%  Similarity=0.220  Sum_probs=104.1

Q ss_pred             hhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022           24 LLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD  103 (262)
Q Consensus        24 ~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D  103 (262)
                      .+...+|+|+|...++++++++++|+.+|++.|.++++.++||++.+.                     ++++|+|+..|
T Consensus        38 ~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~---------------------~~lvGivt~~d   96 (172)
T 3lhh_A           38 RLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNV---------------------DDMVGIISAKQ   96 (172)
T ss_dssp             -----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSST---------------------TSEEEEEEHHH
T ss_pred             ccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC---------------------CeEEEEEEHHH
Confidence            356789999997556789999999999999999999999999998641                     58999999999


Q ss_pred             HHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          104 ILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       104 il~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      ++.++....                ..+|+++|.    +  +.++.+++++.+|+++|. ++++++||+ ++.       
T Consensus        97 l~~~~~~~~----------------~~~v~~im~----~--~~~v~~~~~l~~a~~~m~~~~~~~~pVv-d~~-------  146 (172)
T 3lhh_A           97 LLSESIAGE----------------RLELVDLVK----N--CNFVPNSLSGMELLEHFRTTGSQMVFVV-DEY-------  146 (172)
T ss_dssp             HHHHHHTTC----------------CCCGGGGCB----C--CEEEETTCCHHHHHHHHHHHTCSEEEEE-CTT-------
T ss_pred             HHHHHhhcC----------------cccHHHHhc----C--CeEeCCCCCHHHHHHHHHHcCCeEEEEE-eCC-------
Confidence            999877421                347999993    2  588999999999999998 799999996 422       


Q ss_pred             eecccCCeeeEecHHHHHHHHHhhc
Q 046022          183 ELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                           |+.+||||++||++++...+
T Consensus       147 -----g~lvGiit~~Dil~~l~~~~  166 (172)
T 3lhh_A          147 -----GDLKGLVTLQDMMDALTGEF  166 (172)
T ss_dssp             -----SCEEEEEEHHHHHHHHHTTC
T ss_pred             -----CCEEEEeeHHHHHHHHhCCC
Confidence                 24469999999999998754

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.74  E-value=3.9e-18  Score=153.72  Aligned_cols=180  Identities=16%  Similarity=0.175  Sum_probs=136.1

Q ss_pred             eccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecC-CCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHH
Q 046022           30 VRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAP-PGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHI  108 (262)
Q Consensus        30 v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~-~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l  108 (262)
                      ++++|.  ++++++++++++.+|++.|.++++..+||+|+ .                      ++++|+||..|++.++
T Consensus       120 ~~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~----------------------~~~~Givt~~dl~~~~  175 (330)
T 2v8q_E          120 YLQDSF--KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES----------------------GNTLYILTHKRILKFL  175 (330)
T ss_dssp             HSSSSC--CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTT----------------------CCEEEEECHHHHHHHH
T ss_pred             Hhhccc--CCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCC----------------------CcEEEEEcHHHHHHHH
Confidence            457774  56889999999999999999999999999986 3                      5899999999999987


Q ss_pred             hCCCCCCCCCCCcchHHhhhccccccc--cccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceec
Q 046022          109 AGDDQMNGSDDAPDDLDKKMSAPVSSI--IGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELV  185 (262)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~~~~~~V~~i--m~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~  185 (262)
                      .....-       ......+..+++++  |..  .+  +.++.+++++.+|++.|. ++++++||+ ++.          
T Consensus       176 ~~~~~~-------~~~~~~~~~~v~~~~v~~~--~~--~~~v~~~~~l~~~~~~m~~~~~~~~~Vv-d~~----------  233 (330)
T 2v8q_E          176 KLFITE-------FPKPEFMSKSLEELQIGTY--AN--IAMVRTTTPVYVALGIFVQHRVSALPVV-DEK----------  233 (330)
T ss_dssp             HHHSCS-------SSCCGGGGSBHHHHTCSBC--SS--CCCEETTCBHHHHHHHHHHHCCSEEEEE-CTT----------
T ss_pred             HHHhhc-------cCchhhhcCCHHHhcccCc--CC--ceEECCCCCHHHHHHHHHHcCCCeEEEE-CCC----------
Confidence            641100       00112344567776  431  13  578999999999999998 799999996 322          


Q ss_pred             ccCCeeeEecHHHHHHHHHhhcccchhhhccccchh----cccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          186 ESASSYQMLTQMDLLRFMMNHASELKDITSHSIREL----GALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       186 ~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL----~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                        ++.+|+||..||++++....  +. ....+++++    ..++++++++++++++.+|+++|.++++..+||||++|.
T Consensus       234 --~~l~Giit~~dl~~~~~~~~--~~-~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~  307 (330)
T 2v8q_E          234 --GRVVDIYSKFDVINLAAEKT--YN-NLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDV  307 (330)
T ss_dssp             --SBEEEEEEGGGTGGGGGSSC--CC-CCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSB
T ss_pred             --CcEEEEEEHHHHHHHHhccc--cc-cccCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCc
Confidence              23469999999998775431  10 013455553    123588999999999999999999999999999998764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.74  E-value=6.1e-18  Score=132.80  Aligned_cols=124  Identities=17%  Similarity=0.232  Sum_probs=102.4

Q ss_pred             hcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHH
Q 046022           26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDIL  105 (262)
Q Consensus        26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil  105 (262)
                      .+.+|+|+|...++++++++++|+.+|++.|.++++.++||++.+.                     ++++|+|+..|++
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~---------------------~~~~Givt~~dl~   61 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDR---------------------DNIIGILLAKDLL   61 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSST---------------------TCEEEEEEGGGGG
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC---------------------CcEEEEEEHHHHH
Confidence            4678999997556788999999999999999999999999998631                     5899999999988


Q ss_pred             HHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccccccee
Q 046022          106 AHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVEL  184 (262)
Q Consensus       106 ~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~  184 (262)
                      .++...                 ..+++++|.    .  +.++.+++++.+|+++|. ++.+++||+ ++.         
T Consensus        62 ~~~~~~-----------------~~~v~~~m~----~--~~~v~~~~~l~~~~~~m~~~~~~~~pVv-d~~---------  108 (129)
T 3jtf_A           62 RYMLEP-----------------ALDIRSLVR----P--AVFIPEVKRLNVLLREFRASRNHLAIVI-DEH---------  108 (129)
T ss_dssp             GGGTCT-----------------TSCGGGGCB----C--CCEEETTCBHHHHHHHHHTSSCCEEEEE-CC----------
T ss_pred             hHhccC-----------------CcCHHHHhC----C--CeEeCCCCcHHHHHHHHHhcCCeEEEEE-eCC---------
Confidence            776521                 236899985    1  468999999999999998 689999996 432         


Q ss_pred             cccCCeeeEecHHHHHHHHHhh
Q 046022          185 VESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       185 ~~~~~~~giITqsDIir~L~~~  206 (262)
                         |+.+||||++||+++|...
T Consensus       109 ---g~~~Giit~~Dil~~l~ge  127 (129)
T 3jtf_A          109 ---GGISGLVTMEDVLEQIVGD  127 (129)
T ss_dssp             ---CCEEEEEEHHHHHHHHHHT
T ss_pred             ---CCEEEEEEHHHHHHHHhCC
Confidence               2346999999999998764

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.73  E-value=1.1e-17  Score=135.00  Aligned_cols=128  Identities=18%  Similarity=0.264  Sum_probs=105.2

Q ss_pred             hhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEe-cCCCCcccCCCcccccccccccCcCCeEEEEEeHH
Q 046022           24 LLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVA-APPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTML  102 (262)
Q Consensus        24 ~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVv-d~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~  102 (262)
                      .|.+.+|+|+|....+++++++++|+.+|++.|.++++.++||+ +.++                     ++++|+|+..
T Consensus        16 ~l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~---------------------~~lvGivt~~   74 (153)
T 3oco_A           16 EMNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDK---------------------DKIIGYAYNY   74 (153)
T ss_dssp             HHHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEE---------------------EEEEEEEEHH
T ss_pred             ccCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCC---------------------CcEEEEEEHH
Confidence            35778999999643478899999999999999999999999999 6431                     6899999999


Q ss_pred             HHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccccc
Q 046022          103 DILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISG  181 (262)
Q Consensus       103 Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g  181 (262)
                      |++.++...                ...+|+++|.    .  +.++.+++++.+|+++|. ++++++||+ ++.      
T Consensus        75 dl~~~~~~~----------------~~~~v~~~m~----~--~~~v~~~~~l~~~~~~m~~~~~~~lpVv-d~~------  125 (153)
T 3oco_A           75 DIVRQARID----------------DKAKISTIMR----D--IVSVPENMKVPDVMEEMSAHRVPMAIVI-DEY------  125 (153)
T ss_dssp             HHHHHHHHH----------------TTSBGGGTCB----C--CEEEETTSBHHHHHHHHHHTTCSCEEEE-CTT------
T ss_pred             HHHhHHhcC----------------CCCcHHHHhC----C--CeEECCCCCHHHHHHHHHHcCCcEEEEE-eCC------
Confidence            999887641                1358999993    2  588999999999999998 799999996 422      


Q ss_pred             ceecccCCeeeEecHHHHHHHHHhhc
Q 046022          182 VELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       182 ~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                            |+.+||||++||++++...+
T Consensus       126 ------g~~vGivt~~dil~~l~~~~  145 (153)
T 3oco_A          126 ------GGTSGIITDKDVYEELFGNL  145 (153)
T ss_dssp             ------SCEEEEECHHHHHHHHHC--
T ss_pred             ------CCEEEEeeHHHHHHHHhccC
Confidence                  34469999999999998654

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.73  E-value=3.7e-18  Score=133.53  Aligned_cols=124  Identities=16%  Similarity=0.334  Sum_probs=99.9

Q ss_pred             cceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022           27 EAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA  106 (262)
Q Consensus        27 ~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~  106 (262)
                      +.+|+|+|....+++++++++|+.+|++.|.++++.++||++.+.                     ++++|+|+..|+++
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~---------------------~~~vGivt~~dl~~   60 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK---------------------DHIEGILMAKDLLP   60 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSST---------------------TCEEEEEEGGGGGG
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCC---------------------CcEEEEEEHHHHHH
Confidence            568999997544688999999999999999999999999998641                     58999999999988


Q ss_pred             HHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceec
Q 046022          107 HIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELV  185 (262)
Q Consensus       107 ~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~  185 (262)
                      ++....               ...+++++|..      +.++.+++++.+|++.|. ++++++||+ ++.          
T Consensus        61 ~~~~~~---------------~~~~v~~~m~~------~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~~----------  108 (127)
T 3nqr_A           61 FMRSDA---------------EAFSMDKVLRT------AVVVPESKRVDRMLKEFRSQRYHMAIVI-DEF----------  108 (127)
T ss_dssp             GGSTTC---------------CCCCHHHHCBC------CCEEETTCBHHHHHHHHHHTTCCEEEEE-CTT----------
T ss_pred             HHhccC---------------CCCCHHHHcCC------CeEECCCCcHHHHHHHHHhcCCeEEEEE-eCC----------
Confidence            765311               13478999951      357999999999999998 799999996 422          


Q ss_pred             ccCCeeeEecHHHHHHHHHh
Q 046022          186 ESASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       186 ~~~~~~giITqsDIir~L~~  205 (262)
                        |+.+||||++||++++..
T Consensus       109 --g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A          109 --GGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             --SCEEEEEEHHHHHHHC--
T ss_pred             --CCEEEEEEHHHHHHHHhC
Confidence              244699999999998753

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.73  E-value=4.4e-17  Score=127.71  Aligned_cols=129  Identities=16%  Similarity=0.276  Sum_probs=104.7

Q ss_pred             hhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHH
Q 046022           25 LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDI  104 (262)
Q Consensus        25 l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Di  104 (262)
                      |.+.+|+|+|.  ++++++++++|+.+|++.|.++++.++||+| +                      ++++|+|+..|+
T Consensus         1 l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~----------------------~~~~Givt~~dl   55 (133)
T 2ef7_A            1 MEEEIVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G----------------------NKPVGIITERDI   55 (133)
T ss_dssp             CCCCBGGGTSB--CSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T----------------------TEEEEEEEHHHH
T ss_pred             CCcccHHHhcc--CCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C----------------------CEEEEEEcHHHH
Confidence            35688999995  3678999999999999999999999999999 4                      589999999999


Q ss_pred             HHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccce
Q 046022          105 LAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVE  183 (262)
Q Consensus       105 l~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~  183 (262)
                      +.++.....              ...+++++|..   +  +.++.+++++.+|++.|. ++.+++||+ +++        
T Consensus        56 ~~~~~~~~~--------------~~~~v~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vv-d~~--------  107 (133)
T 2ef7_A           56 VKAIGKGKS--------------LETKAEEFMTA---S--LITIREDSPITGALALMRQFNIRHLPVV-DDK--------  107 (133)
T ss_dssp             HHHHHTTCC--------------TTCBGGGTSEE---C--CCCEETTSBHHHHHHHHHHHTCSEEEEE-CTT--------
T ss_pred             HHHHhcCCC--------------cccCHHHHcCC---C--CEEECCCCCHHHHHHHHHHcCCCEEEEE-CCC--------
Confidence            888765211              13589999973   2  577999999999999998 799999996 322        


Q ss_pred             ecccCCeeeEecHHHHHHHHHhhcccc
Q 046022          184 LVESASSYQMLTQMDLLRFMMNHASEL  210 (262)
Q Consensus       184 ~~~~~~~~giITqsDIir~L~~~~~~l  210 (262)
                          ++.+|+||+.||++++.+....+
T Consensus       108 ----g~~~Giit~~dll~~~~~~~~~l  130 (133)
T 2ef7_A          108 ----GNLKGIISIRDITRAIDDMFETM  130 (133)
T ss_dssp             ----SCEEEEEEHHHHHHHHHHHC---
T ss_pred             ----CeEEEEEEHHHHHHHHHHHHHHh
Confidence                24469999999999998876543

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.72  E-value=5.3e-18  Score=134.50  Aligned_cols=127  Identities=18%  Similarity=0.246  Sum_probs=101.7

Q ss_pred             cceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022           27 EAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA  106 (262)
Q Consensus        27 ~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~  106 (262)
                      +.+|+|+|...++++++++++|+.+|++.|.++++.++||++.+.                     ++++|+|+..|+++
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~---------------------~~~vGivt~~dl~~   60 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESH---------------------DDVLGVLLAKDLLP   60 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSST---------------------TCEEEEEEGGGGGG
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCC---------------------CcEEEEEEHHHHHH
Confidence            568999997556789999999999999999999999999998641                     58999999999988


Q ss_pred             HHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceec
Q 046022          107 HIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELV  185 (262)
Q Consensus       107 ~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~  185 (262)
                      ++....              ....+++++|..      +.++.+++++.+|+++|. ++++++||+ ++.          
T Consensus        61 ~~~~~~--------------~~~~~v~~~m~~------~~~v~~~~~l~~~~~~m~~~~~~~~~Vv-d~~----------  109 (136)
T 3lfr_A           61 LILKAD--------------GDSDDVKKLLRP------ATFVPESKRLNVLLREFRANHNHMAIVI-DEY----------  109 (136)
T ss_dssp             GGGSSS--------------GGGCCGGGTCBC------CCEEETTCBHHHHHHHHHHHTCCEEEEE-CTT----------
T ss_pred             HHHhcc--------------CCCcCHHHHcCC------CeEECCCCcHHHHHHHHHhcCCeEEEEE-eCC----------
Confidence            776311              124589999961      478999999999999998 799999996 322          


Q ss_pred             ccCCeeeEecHHHHHHHHHhhc
Q 046022          186 ESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       186 ~~~~~~giITqsDIir~L~~~~  207 (262)
                        |+.+||||.+||++++...+
T Consensus       110 --g~lvGiit~~Dil~~l~~~~  129 (136)
T 3lfr_A          110 --GGVAGLVTIEDVLEQIVGDI  129 (136)
T ss_dssp             --SCEEEEEEHHHHHTTC----
T ss_pred             --CCEEEEEEHHHHHHHHhCCC
Confidence              24469999999999876643

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.71  E-value=4.6e-17  Score=135.11  Aligned_cols=127  Identities=16%  Similarity=0.177  Sum_probs=104.0

Q ss_pred             hhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022           24 LLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD  103 (262)
Q Consensus        24 ~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D  103 (262)
                      .+...+|+|+|+..++++++++++|+.+|++.|.++++.++||++.+.                     ++++|+|+..|
T Consensus        32 ~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~---------------------~~lvGivt~~D   90 (173)
T 3ocm_A           32 TLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSL---------------------DEVVGIGRAKD   90 (173)
T ss_dssp             HHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSST---------------------TSEEEEEEHHH
T ss_pred             ccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCC---------------------CCEEEEEEHHH
Confidence            357789999997556789999999999999999999999999998642                     58999999999


Q ss_pred             HHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          104 ILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       104 il~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      |+.++....                ..++. +|.    +  +.++.+++++.+|+++|. ++++++||+ ++.       
T Consensus        91 l~~~~~~~~----------------~~~v~-~~~----~--~~~v~~~~~l~~al~~m~~~~~~~~~Vv-de~-------  139 (173)
T 3ocm_A           91 LVADLITEG----------------RVRRN-RLR----D--PIIVHESIGILRLMDTLKRSRGQLVLVA-DEF-------  139 (173)
T ss_dssp             HHHHHHHHS----------------SCCGG-GSB----C--CCEECGGGCHHHHHHHHHHSTTCCEEEE-CTT-------
T ss_pred             HHHHHhcCC----------------cchhH-hcC----C--CeEECCCCcHHHHHHHHHHcCCeEEEEE-eCC-------
Confidence            998876311                23677 443    2  578999999999999998 789999996 322       


Q ss_pred             eecccCCeeeEecHHHHHHHHHhhc
Q 046022          183 ELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                           |+.+||||..||++.+...+
T Consensus       140 -----g~lvGiIT~~Dil~~l~~~i  159 (173)
T 3ocm_A          140 -----GAIEGLVTPIDVFEAIAGEF  159 (173)
T ss_dssp             -----CCEEEEECHHHHHHHHHCCC
T ss_pred             -----CCEEEEEeHHHHHHHHhCcC
Confidence                 24469999999999998654

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.71  E-value=1.5e-17  Score=135.94  Aligned_cols=132  Identities=20%  Similarity=0.251  Sum_probs=108.3

Q ss_pred             HhhhcceeccccccC-CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeH
Q 046022           23 RLLREAKVRDLTAEK-RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTM  101 (262)
Q Consensus        23 ~~l~~~~v~dlm~~~-~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~  101 (262)
                      ..|..++|+|+|..+ .+++++++++|+.+|++.|.++++.++||+|++                      ++++|+|+.
T Consensus        19 ~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~----------------------~~~~Givt~   76 (165)
T 3fhm_A           19 FQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD----------------------GVVLGIFTE   76 (165)
T ss_dssp             CSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT----------------------SCEEEEEEH
T ss_pred             HhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC----------------------CeEEEEEEH
Confidence            467889999999642 467899999999999999999999999999964                      689999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccc
Q 046022          102 LDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENIS  180 (262)
Q Consensus       102 ~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~  180 (262)
                      .||++++....            ......+|+++|..   .  +.++.+++++.+|+++|. ++++++||+.+   +++ 
T Consensus        77 ~dl~~~~~~~~------------~~~~~~~v~~~m~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---g~~-  135 (165)
T 3fhm_A           77 RDLVKAVAGQG------------AASLQQSVSVAMTK---N--VVRCQHNSTTDQLMEIMTGGRFRHVPVEEN---GRL-  135 (165)
T ss_dssp             HHHHHHHHHHG------------GGGGTSBGGGTSBS---S--CCCBCTTCBHHHHHHHHHHHTCSEEEEEET---TEE-
T ss_pred             HHHHHHHHhcC------------CccccCCHHHHhcC---C--CeEECCCCcHHHHHHHHHHcCCCEEEEEEC---CEE-
Confidence            99999877411            12335689999972   3  578999999999999998 79999999633   233 


Q ss_pred             cceecccCCeeeEecHHHHHHHHHhhc
Q 046022          181 GVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       181 g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                                +|+||+.||++++....
T Consensus       136 ----------~Giit~~dil~~~~~~~  152 (165)
T 3fhm_A          136 ----------AGIISIGDVVKARIGEI  152 (165)
T ss_dssp             ----------EEEEEHHHHHHHTTCC-
T ss_pred             ----------EEEEEHHHHHHHHHHHH
Confidence                      59999999999987654

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.70  E-value=6.8e-17  Score=124.59  Aligned_cols=120  Identities=16%  Similarity=0.257  Sum_probs=99.7

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      ++|+|+|.  ++++++++++|+.+|++.|.++++.++||+|++                      ++++|+|+..|++.+
T Consensus         1 ~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----------------------~~~~G~vt~~dl~~~   56 (122)
T 3kpb_A            1 TLVKDILS--KPPITAHSNISIMEAAKILIKHNINHLPIVDEH----------------------GKLVGIITSWDIAKA   56 (122)
T ss_dssp             CBHHHHCC--SCCCCEETTSBHHHHHHHHHHHTCSCEEEECTT----------------------SBEEEEECHHHHHHH
T ss_pred             CchHHhhC--CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCC----------------------CCEEEEEEHHHHHHH
Confidence            47899995  467899999999999999999999999999864                      689999999999998


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      +....                 .+++++|..   +  +.++.+++++.+|++.|. ++.+++||+ +++           
T Consensus        57 ~~~~~-----------------~~v~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vv-d~~-----------  102 (122)
T 3kpb_A           57 LAQNK-----------------KTIEEIMTR---N--VITAHEDEPVDHVAIKMSKYNISGVPVV-DDY-----------  102 (122)
T ss_dssp             HHTTC-----------------CBGGGTSBS---S--CCCEETTSBHHHHHHHHHHHTCSEEEEE-CTT-----------
T ss_pred             HHhcc-----------------cCHHHHhcC---C--CeEECCCCCHHHHHHHHHHhCCCeEEEE-CCC-----------
Confidence            77521                 278999973   2  577999999999999998 799999996 432           


Q ss_pred             cCCeeeEecHHHHHHHHHhh
Q 046022          187 SASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~~~  206 (262)
                       ++.+|+||+.||++++.++
T Consensus       103 -g~~~Givt~~dl~~~l~~~  121 (122)
T 3kpb_A          103 -RRVVGIVTSEDISRLFGGK  121 (122)
T ss_dssp             -CBEEEEEEHHHHHHHHC--
T ss_pred             -CCEEEEEeHHHHHHHhhcC
Confidence             2346999999999998653

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.70  E-value=1.2e-16  Score=125.88  Aligned_cols=128  Identities=18%  Similarity=0.380  Sum_probs=103.2

Q ss_pred             HhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHH
Q 046022           23 RLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTML  102 (262)
Q Consensus        23 ~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~  102 (262)
                      .+|.+.+|+++|.  ++++++++++|+.+|++.|.++++.++||+|++                      ++++|+|+..
T Consensus         3 ~~l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----------------------~~~~Givt~~   58 (138)
T 2p9m_A            3 DTLKNIKVKDVMT--KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE----------------------NKVIGIVTTT   58 (138)
T ss_dssp             --CTTCBGGGTSB--CSCCCEETTSBHHHHHHHHHHHTCCEEEEECTT----------------------CBEEEEEEHH
T ss_pred             cccccCCHHHhhc--CCceEECCCCcHHHHHHHHHHCCCcEEEEECCC----------------------CeEEEEEEHH
Confidence            4678899999995  467899999999999999999999999999864                      5899999999


Q ss_pred             HH-HHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cC-----CCeeEeecCCC
Q 046022          103 DI-LAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KG-----IHRALVPMDSR  175 (262)
Q Consensus       103 Di-l~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g-----~~rv~V~~~~~  175 (262)
                      |+ +.++....              ....+++++|..   .  +.++.+++++.+|++.|. ++     ++++||+ +++
T Consensus        59 dl~~~~~~~~~--------------~~~~~v~~~m~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vv-d~~  118 (138)
T 2p9m_A           59 DIGYNLIRDKY--------------TLETTIGDVMTK---D--VITIHEDASILEAIKKMDISGKKEEIINQLPVV-DKN  118 (138)
T ss_dssp             HHHHHHTTTCC--------------CSSCBHHHHSCS---S--CCCEETTSBHHHHHHHHTCC-----CCCEEEEE-CTT
T ss_pred             HHHHHHHhhcc--------------cCCcCHHHHhCC---C--cEEECCCCCHHHHHHHHHhcCCccccccEEEEE-CCC
Confidence            99 77765421              123579999972   2  577999999999999998 67     8999996 322


Q ss_pred             CcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022          176 MENISGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       176 ~~~~~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                                  ++.+|+||..||++++.+.
T Consensus       119 ------------g~~~Giit~~dll~~~~~~  137 (138)
T 2p9m_A          119 ------------NKLVGIISDGDIIRTISKI  137 (138)
T ss_dssp             ------------SBEEEEEEHHHHHHHHHHC
T ss_pred             ------------CeEEEEEEHHHHHHHHHhh
Confidence                        2346999999999998764

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.70  E-value=1.6e-16  Score=127.93  Aligned_cols=137  Identities=13%  Similarity=0.249  Sum_probs=106.2

Q ss_pred             hhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022           24 LLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD  103 (262)
Q Consensus        24 ~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D  103 (262)
                      .|...+|+|+|....+++++++++|+.+|++.|.++++.++||+|.+                      ++++|+|+..|
T Consensus         7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----------------------~~~~Givt~~d   64 (157)
T 2emq_A            7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS----------------------YKLHGLISMTM   64 (157)
T ss_dssp             ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT----------------------CCEEEEEEHHH
T ss_pred             hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCC----------------------CCEEEEeeHHH
Confidence            46788999999643477899999999999999999999999999864                      58999999999


Q ss_pred             HHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          104 ILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       104 il~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      ++.++.....+        ........++.++|..   +  +.++.+++++.+|++.|. +++  +||+ ++.       
T Consensus        65 l~~~~~~~~~~--------~~~~~~~~~v~~~m~~---~--~~~v~~~~~l~~a~~~m~~~~~--l~Vv-d~~-------  121 (157)
T 2emq_A           65 MMDAILGLERI--------EFERLETMKVEEVMNR---N--IPRLRLDDSLMKAVGLIVNHPF--VCVE-NDD-------  121 (157)
T ss_dssp             HHHHSBCSSSB--------CGGGGGTCBGGGTCBC---C--CCEEETTSBHHHHHHHHHHSSE--EEEE-CSS-------
T ss_pred             HHHHHhccccc--------chHHhcCCcHHHHhCC---C--CceecCCCcHHHHHHHHhhCCE--EEEE-cCC-------
Confidence            99887642211        1122345689999973   3  578999999999999998 555  8885 322       


Q ss_pred             eecccCCeeeEecHHHHHHHHHhhcccc
Q 046022          183 ELVESASSYQMLTQMDLLRFMMNHASEL  210 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIir~L~~~~~~l  210 (262)
                           ++.+|+||++||++++......+
T Consensus       122 -----g~~~Giit~~dil~~~~~~~~~~  144 (157)
T 2emq_A          122 -----GYFAGIFTRREVLKQLNKQLHRP  144 (157)
T ss_dssp             -----SSEEEEEEHHHHHHHHHHTTCCC
T ss_pred             -----CeEEEEEEHHHHHHHHHHHhhcc
Confidence                 24469999999999998865443

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.69  E-value=1.4e-17  Score=132.72  Aligned_cols=142  Identities=18%  Similarity=0.259  Sum_probs=102.9

Q ss_pred             hcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHH
Q 046022           26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDIL  105 (262)
Q Consensus        26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil  105 (262)
                      ...+|+|+|....+++++++++|+.+|++.|.++++.++||+|.+                      ++++|+|+..|++
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----------------------~~~~G~vt~~dl~   60 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDED----------------------WKLVGLVSDYDLL   60 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT----------------------CBEEEEEEHHHHT
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC----------------------CeEEEEEEHHHHH
Confidence            457899999754478899999999999999999999999999864                      5899999999988


Q ss_pred             HHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccccccee
Q 046022          106 AHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVEL  184 (262)
Q Consensus       106 ~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~  184 (262)
                      .++.....+................++.++|..   .  +.++.+++++.+|+++|. ++++++||+ +++         
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~---~--~~~v~~~~~l~~a~~~~~~~~~~~l~Vv-d~~---------  125 (152)
T 4gqw_A           61 ALDSGDSTWKTFNAVQKLLSKTNGKLVGDLMTP---A--PLVVEEKTNLEDAAKILLETKYRRLPVV-DSD---------  125 (152)
T ss_dssp             TCC----CCHHHHHHHTC-----CCBHHHHSEE---S--CCCEESSSBHHHHHHHHHHSSCCEEEEE-CTT---------
T ss_pred             HhhcccCcccchHHHHHHHHHhccccHHHhcCC---C--ceEECCCCcHHHHHHHHHHCCCCEEEEE-CCC---------
Confidence            654321110000000000012235689999973   2  467999999999999998 799999996 322         


Q ss_pred             cccCCeeeEecHHHHHHHHHhhc
Q 046022          185 VESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       185 ~~~~~~~giITqsDIir~L~~~~  207 (262)
                         ++.+|+||++||++++.+..
T Consensus       126 ---g~~~Giit~~dil~~~~~~~  145 (152)
T 4gqw_A          126 ---GKLVGIITRGNVVRAALQIK  145 (152)
T ss_dssp             ---SBEEEEEEHHHHHHHHHC--
T ss_pred             ---CcEEEEEEHHHHHHHHHhcc
Confidence               23469999999999998753

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.69  E-value=8.7e-17  Score=129.04  Aligned_cols=131  Identities=19%  Similarity=0.267  Sum_probs=102.7

Q ss_pred             cchHHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeE
Q 046022           16 HAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHY   95 (262)
Q Consensus        16 ~~~~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~   95 (262)
                      +....+.+.+ .++|+|+|....+++++++++|+.+|++.|.++++.++||+|++                      +++
T Consensus        17 ~~~~~l~~~l-~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~----------------------~~~   73 (149)
T 3k2v_A           17 HPGGALGRKL-LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDD----------------------MNI   73 (149)
T ss_dssp             ---CHHHHHT-TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT----------------------CBE
T ss_pred             CCCchhchhc-ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC----------------------CcE
Confidence            3333444433 36999999642367899999999999999999999999999864                      689


Q ss_pred             EEEEeHHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCC
Q 046022           96 IGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDS  174 (262)
Q Consensus        96 vGivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~  174 (262)
                      +|+|+..|+++.+.....             ....++.++|..   .  +.++.+++++.+|++.|. ++++++||+.+ 
T Consensus        74 ~Givt~~dl~~~~~~~~~-------------~~~~~v~~~m~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-  134 (149)
T 3k2v_A           74 IGIFTDGDLRRVFDTGVD-------------MRDASIADVMTR---G--GIRIRPGTLAVDALNLMQSRHITCVLVADG-  134 (149)
T ss_dssp             EEEEEHHHHHHHHCSSSC-------------CTTCBHHHHSEE---S--CCEECTTCBHHHHHHHHHHHTCSEEEEEET-
T ss_pred             EEEecHHHHHHHHhcCCC-------------cccCcHHHHcCC---C--CeEECCCCCHHHHHHHHHHcCCCEEEEecC-
Confidence            999999999988875221             124589999973   2  578999999999999998 79999999643 


Q ss_pred             CCcccccceecccCCeeeEecHHHHHH
Q 046022          175 RMENISGVELVESASSYQMLTQMDLLR  201 (262)
Q Consensus       175 ~~~~~~g~~~~~~~~~~giITqsDIir  201 (262)
                      +  ++           +|+||.+||++
T Consensus       135 ~--~~-----------~Giit~~dil~  148 (149)
T 3k2v_A          135 D--HL-----------LGVVHMHDLLR  148 (149)
T ss_dssp             T--EE-----------EEEEEHHHHTC
T ss_pred             C--EE-----------EEEEEHHHhhc
Confidence            2  33           59999999975

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.69  E-value=1.1e-16  Score=125.83  Aligned_cols=127  Identities=20%  Similarity=0.243  Sum_probs=101.4

Q ss_pred             hcc-eeccccccC-CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022           26 REA-KVRDLTAEK-RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD  103 (262)
Q Consensus        26 ~~~-~v~dlm~~~-~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D  103 (262)
                      .++ +|+|+|..+ ++++++++++|+.+|++.|.++++.++||++ +                      ++++|+|+..|
T Consensus         3 ~~m~~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~----------------------~~~~Givt~~d   59 (135)
T 2rc3_A            3 GHMKTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D----------------------EKLVGILTERD   59 (135)
T ss_dssp             --CCBHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T----------------------TEEEEEEEHHH
T ss_pred             ccceeHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C----------------------CEEEEEEehHH
Confidence            355 899999621 4678999999999999999999999999998 4                      58999999999


Q ss_pred             HHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          104 ILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       104 il~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      +++++.....            .....+++++|..   +  +.++.+++++.+|++.|. ++++++||+. +  ++    
T Consensus        60 l~~~~~~~~~------------~~~~~~v~~~m~~---~--~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~--g~----  115 (135)
T 2rc3_A           60 FSRKSYLLDK------------PVKDTQVKEIMTR---Q--VAYVDLNNTNEDCMALITEMRVRHLPVLD-D--GK----  115 (135)
T ss_dssp             HHHHGGGSSS------------CGGGSBGGGTSBC---S--CCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T--TE----
T ss_pred             HHHHHHHcCC------------CcccCCHHHhccC---C--CeEECCCCcHHHHHHHHHHhCCCEEEEEe-C--CE----
Confidence            9976653210            1234689999973   3  578999999999999998 7999999964 2  13    


Q ss_pred             eecccCCeeeEecHHHHHHHHHhh
Q 046022          183 ELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIir~L~~~  206 (262)
                             .+|+||++||++++.++
T Consensus       116 -------~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A          116 -------VIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             -------EEEEEEHHHHHHHHHC-
T ss_pred             -------EEEEEEHHHHHHHHHhc
Confidence                   35999999999998764

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.69  E-value=2.1e-16  Score=124.51  Aligned_cols=128  Identities=16%  Similarity=0.223  Sum_probs=104.0

Q ss_pred             hhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022           24 LLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD  103 (262)
Q Consensus        24 ~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D  103 (262)
                      .|...+|+|+|.  ++++++++++|+.+|++.|.++++.++||+|++                      ++++|+|+..|
T Consensus         3 ~l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----------------------~~~~Givt~~d   58 (138)
T 2yzi_A            3 MDMKAPIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD----------------------GNVVGFFTKSD   58 (138)
T ss_dssp             CCTTSBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT----------------------SCEEEEEEHHH
T ss_pred             chhhhhHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC----------------------CcEEEEEeHHH
Confidence            467789999995  467899999999999999999999999999864                      68999999999


Q ss_pred             HHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          104 ILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       104 il~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      +++.+.....             ....+++++|..   +  +.++.+++++.+|+++|. ++++++ |+.++        
T Consensus        59 l~~~~~~~~~-------------~~~~~v~~~m~~---~--~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~--------  111 (138)
T 2yzi_A           59 IIRRVIVPGL-------------PYDIPVERIMTR---N--LITANVNTPLGEVLRKMAEHRIKHI-LIEEE--------  111 (138)
T ss_dssp             HHHHTTTTCC-------------CTTSBGGGTCBC---S--CCEEETTSBHHHHHHHHHHHTCSEE-EEEET--------
T ss_pred             HHHHHHhcCC-------------cccCCHHHHhhC---C--CeEECCCCcHHHHHHHHHhcCCCEE-EECCC--------
Confidence            9865543210             124589999973   3  578999999999999998 799999 85322        


Q ss_pred             eecccCCeeeEecHHHHHHHHHhhc
Q 046022          183 ELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                           ++.+|+||+.||++++.+..
T Consensus       112 -----g~~~Giit~~dil~~~~~~~  131 (138)
T 2yzi_A          112 -----GKIVGIFTLSDLLEASRRRL  131 (138)
T ss_dssp             -----TEEEEEEEHHHHHHHHHCCS
T ss_pred             -----CCEEEEEEHHHHHHHHHHHH
Confidence                 23469999999999998754

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.69  E-value=4.8e-16  Score=123.25  Aligned_cols=122  Identities=19%  Similarity=0.228  Sum_probs=100.8

Q ss_pred             cceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCC--eEEEEEeHHHH
Q 046022           27 EAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRK--HYIGMLTMLDI  104 (262)
Q Consensus        27 ~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~--~~vGivs~~Di  104 (262)
                      +.+|+|+|.  ++++++++++|+.+|++.|.++++.++||+|++                      +  +++|+|+..|+
T Consensus         4 ~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----------------------~~~~~~Givt~~dl   59 (141)
T 2rih_A            4 AIRTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARD----------------------NPKRPVAVVSERDI   59 (141)
T ss_dssp             -CBGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT----------------------EEEEEEEEEEHHHH
T ss_pred             ceEHHHHhc--CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC----------------------CcceeEEEEEHHHH
Confidence            468999995  477899999999999999999999999999864                      5  89999999999


Q ss_pred             HHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccce
Q 046022          105 LAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVE  183 (262)
Q Consensus       105 l~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~  183 (262)
                      +.++....              ....+++++|..   +  +.++.++ ++.+|++.|. ++++++||+ +++        
T Consensus        60 ~~~~~~~~--------------~~~~~v~~~m~~---~--~~~v~~~-~l~~a~~~m~~~~~~~l~Vv-d~~--------  110 (141)
T 2rih_A           60 LRAVAQRL--------------DLDGPAMPIANS---P--ITVLDTD-PVHVAAEKMRRHNIRHVVVV-NKN--------  110 (141)
T ss_dssp             HHHHHTTC--------------CTTSBSGGGCBC---C--CEEETTS-BHHHHHHHHHHHTCSEEEEE-CTT--------
T ss_pred             HHHHhcCC--------------CCCCCHHHHcCC---C--CeEEcCC-CHHHHHHHHHHcCCeEEEEE-cCC--------
Confidence            99876521              113589999973   3  6889999 9999999998 799999996 322        


Q ss_pred             ecccCCeeeEecHHHHHHHHHh
Q 046022          184 LVESASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       184 ~~~~~~~~giITqsDIir~L~~  205 (262)
                          ++.+|+||++||++++..
T Consensus       111 ----g~~~Giit~~dll~~~~~  128 (141)
T 2rih_A          111 ----GELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             ----SCEEEEEEHHHHHSCHHH
T ss_pred             ----CcEEEEEEHHHHHHHHHH
Confidence                244699999999987665

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.67  E-value=1.2e-16  Score=136.58  Aligned_cols=161  Identities=11%  Similarity=0.126  Sum_probs=98.0

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      .+++++|.  ++++++++++|+.+|+++|.++++.++||+|++                      ++++|+|+..|+...
T Consensus        13 ~~~~~~~~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~----------------------~~l~Givt~~dl~~~   68 (213)
T 1vr9_A           13 MKVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDRE----------------------GHFRGVVNKEDLLDL   68 (213)
T ss_dssp             CBGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT----------------------SBEEEEEEGGGGTTS
T ss_pred             cCHHHhhc--CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC----------------------CEEEEEEEHHHHHhh
Confidence            46899995  467799999999999999999999999999864                      689999999997653


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      +.                   ..+|+++|..   +  +.++.+++++.+|+++|. ++++++||+ +++           
T Consensus        69 ~~-------------------~~~v~~im~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~~-----------  112 (213)
T 1vr9_A           69 DL-------------------DSSVFNKVSL---P--DFFVHEEDNITHALLLFLEHQEPYLPVV-DEE-----------  112 (213)
T ss_dssp             CT-------------------TSBSGGGCBC---T--TCCEETTSBHHHHHHHHHHCCCSEEEEE-CTT-----------
T ss_pred             cC-------------------CCcHHHHccC---C--CEEECCCCcHHHHHHHHHHhCCCEEEEE-cCC-----------
Confidence            32                   2479999973   3  578999999999999998 799999996 422           


Q ss_pred             cCCeeeEecHHHHHHHHHhhcccchhhhccccchhcccCcC-eEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          187 SASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNEN-VFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~~~~-v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                       ++.+|+||.+||++++......         .+  .+++- +.+.....++.+|.+.|.+++++.++|++.+|+
T Consensus       113 -g~lvGiit~~Dil~~~~~~~~~---------~~--~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~~  175 (213)
T 1vr9_A          113 -MRLKGAVSLHDFLEALIEALAM---------DV--PGIRFSVLLEDKPGELRKVVDALALSNINILSVITTRSG  175 (213)
T ss_dssp             -CBEEEEEEHHHHHHHHHHSCC-----------------------------------------------------
T ss_pred             -CEEEEEEEHHHHHHHHHHHhcC---------CC--CcEEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEEEecC
Confidence             2345999999999988653211         11  11111 112233445999999999999999999877664

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.67  E-value=2.2e-16  Score=127.89  Aligned_cols=135  Identities=20%  Similarity=0.280  Sum_probs=105.9

Q ss_pred             hhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022           24 LLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD  103 (262)
Q Consensus        24 ~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D  103 (262)
                      .|...+|+|+|..+.+++++++++|+.+|++.|.++++.++||+|++                      ++++|+|+..|
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~----------------------~~lvGivt~~d   67 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS----------------------YRLHGLIGTNM   67 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT----------------------CBEEEEEEHHH
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCC----------------------CCEEEEeEHHH
Confidence            35678999999643367899999999999999999999999999864                      58999999999


Q ss_pred             HHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          104 ILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       104 il~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      |+.++.....+        ........+|.++|..   +  +.++.+++++.+|+++|. +++  +||+ ++.       
T Consensus        68 l~~~~~~~~~~--------~~~~~~~~~v~~~m~~---~--~~~v~~~~~l~~a~~~m~~~~~--lpVv-d~~-------  124 (159)
T 1yav_A           68 IMNSIFGLERI--------EFEKLDQITVEEVMLT---D--IPRLHINDPIMKGFGMVINNGF--VCVE-NDE-------  124 (159)
T ss_dssp             HHHHHBCSSSB--------CGGGTTTSBHHHHSBC---S--CCEEETTSBHHHHHHHTTTCSE--EEEE-CTT-------
T ss_pred             HHHHhhhhccc--------chhhhccCCHHHhcCC---C--CceEcCCCCHHHHHHHHHhCCE--EEEE-eCC-------
Confidence            99988753211        1122345689999973   3  578999999999999998 444  8885 422       


Q ss_pred             eecccCCeeeEecHHHHHHHHHhhcc
Q 046022          183 ELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                           ++.+|+||++||++++.....
T Consensus       125 -----g~~vGiit~~dil~~~~~~~~  145 (159)
T 1yav_A          125 -----QVFEGIFTRRVVLKELNKHIR  145 (159)
T ss_dssp             -----CBEEEEEEHHHHHHHHHHHC-
T ss_pred             -----CeEEEEEEHHHHHHHHHHHHH
Confidence                 234699999999999987653

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.67  E-value=1e-16  Score=131.48  Aligned_cols=143  Identities=17%  Similarity=0.241  Sum_probs=104.8

Q ss_pred             cceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022           27 EAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA  106 (262)
Q Consensus        27 ~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~  106 (262)
                      .++|+|+|..+.+++++++++|+.+|++.|.++++.++||+|++                      ++++|+|+..||++
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~----------------------~~~~Givt~~dl~~   60 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN----------------------WTLVGVVSDYDLLA   60 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT----------------------CBEEEEEEHHHHTC
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC----------------------CeEEEEEEHHHHHh
Confidence            36899999654478899999999999999999999999999865                      68999999999985


Q ss_pred             HHhCCC------C-CCCCCCCcchH-------HhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEee
Q 046022          107 HIAGDD------Q-MNGSDDAPDDL-------DKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVP  171 (262)
Q Consensus       107 ~l~~~~------~-l~~~~~~~~~~-------~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~  171 (262)
                      ++....      . +......+..+       ......+|+++|..   +  +.++.+++++.+|+++|. ++++++||+
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv  135 (180)
T 3sl7_A           61 LDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTP---S--PLVVRDSTNLEDAARLLLETKFRRLPVV  135 (180)
T ss_dssp             C-------------------CCCSHHHHHHHHHTTTTCBHHHHSEE---S--CCCEETTSBHHHHHHHHTTSTTCEEEEE
T ss_pred             hhhhccccCCcccccccccchhhhhHHHHHHHhccccccHHHHhCC---C--ceEeCCCCcHHHHHHHHHHcCCCEEEEE
Confidence            332110      0 00000011111       12236789999973   2  467999999999999998 699999996


Q ss_pred             cCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc
Q 046022          172 MDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE  209 (262)
Q Consensus       172 ~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~  209 (262)
                       +++            ++.+|+||++||++++......
T Consensus       136 -d~~------------g~~vGiit~~dil~~~~~~~~~  160 (180)
T 3sl7_A          136 -DAD------------GKLIGILTRGNVVRAALQIKRN  160 (180)
T ss_dssp             -CTT------------CBEEEEEEHHHHHHHHHHHHHT
T ss_pred             -CCC------------CeEEEEEEHHHHHHHHHHHhhh
Confidence             422            2446999999999999886543

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.67  E-value=5.5e-17  Score=131.63  Aligned_cols=121  Identities=17%  Similarity=0.236  Sum_probs=99.9

Q ss_pred             hhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022           24 LLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD  103 (262)
Q Consensus        24 ~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D  103 (262)
                      .+...+|+|+|....+++++++++|+.+|++.|.++++.++||++.++                     ++++|+|+..|
T Consensus        34 ~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~---------------------~~lvGivt~~d   92 (156)
T 3oi8_A           34 DFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDK---------------------DEVLGILHAKD   92 (156)
T ss_dssp             HHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSST---------------------TCEEEEEEGGG
T ss_pred             ccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCC---------------------CcEEEEEEHHH
Confidence            356789999997545788999999999999999999999999998642                     48999999999


Q ss_pred             HHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          104 ILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       104 il~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      ++.++...                ...+++++|..      +.++.+++++.+|+++|. ++++++||+ ++.       
T Consensus        93 l~~~~~~~----------------~~~~v~~im~~------~~~v~~~~~l~~a~~~m~~~~~~~~~Vv-d~~-------  142 (156)
T 3oi8_A           93 LLKYMFNP----------------EQFHLKSILRP------AVFVPEGKSLTALLKEFREQRNHMAIVI-DEY-------  142 (156)
T ss_dssp             GGGGSSCG----------------GGCCHHHHCBC------CCEEETTSBHHHHHHHHHHTTCCEEEEE-CTT-------
T ss_pred             HHHHHHcC----------------CcccHHHHcCC------CEEECCCCCHHHHHHHHHhcCCeEEEEE-CCC-------
Confidence            88765431                24579999961      468999999999999998 799999996 422       


Q ss_pred             eecccCCeeeEecHHHHH
Q 046022          183 ELVESASSYQMLTQMDLL  200 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIi  200 (262)
                           |+.+||||++||+
T Consensus       143 -----g~~~Givt~~Dil  155 (156)
T 3oi8_A          143 -----GGTSGLVTFEDII  155 (156)
T ss_dssp             -----SSEEEEEEHHHHC
T ss_pred             -----CCEEEEEEHHHhc
Confidence                 2446999999986

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.67  E-value=1.9e-16  Score=123.73  Aligned_cols=124  Identities=14%  Similarity=0.197  Sum_probs=101.0

Q ss_pred             hcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHH
Q 046022           26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDIL  105 (262)
Q Consensus        26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil  105 (262)
                      .+.+++++|..  +++++++++|+.+|++.|.++++.++||+|.                       ++++|+|+..|++
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----------------------~~~~Givt~~dl~   57 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDG-----------------------ERYLGMVHLSRLL   57 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEET-----------------------TEEEEEEEHHHHH
T ss_pred             cceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEEC-----------------------CEEEEEEEHHHHH
Confidence            46789999964  5679999999999999999999999999986                       3899999999998


Q ss_pred             HHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccccccee
Q 046022          106 AHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVEL  184 (262)
Q Consensus       106 ~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~  184 (262)
                      +.+.+...              ...+++++|..   +  +.++.+++++.+|++.|. ++.+++||+ +++         
T Consensus        58 ~~~~~~~~--------------~~~~v~~~m~~---~--~~~v~~~~~l~~~~~~~~~~~~~~lpVv-d~~---------  108 (128)
T 3gby_A           58 EGRKGWPT--------------VKEKLGEELLE---T--VRSYRPGEQLFDNLISVAAAKCSVVPLA-DED---------  108 (128)
T ss_dssp             TTCSSSCC--------------TTCBCCGGGCB---C--CCCBCTTSBGGGSHHHHHHCSSSEEEEE-CTT---------
T ss_pred             HHHhhCCc--------------ccCcHHHHccC---C--CcEECCCCCHHHHHHHHHhCCCcEEEEE-CCC---------
Confidence            76553210              12479999973   2  567999999999999998 789999996 322         


Q ss_pred             cccCCeeeEecHHHHHHHHHhh
Q 046022          185 VESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       185 ~~~~~~~giITqsDIir~L~~~  206 (262)
                         |+.+|+||++||++++.+.
T Consensus       109 ---g~~~Giit~~dll~~l~~~  127 (128)
T 3gby_A          109 ---GRYEGVVSRKRILGFLAER  127 (128)
T ss_dssp             ---CBEEEEEEHHHHHHHHHTT
T ss_pred             ---CCEEEEEEHHHHHHHHHhh
Confidence               2346999999999998753

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.66  E-value=6.1e-16  Score=122.23  Aligned_cols=131  Identities=21%  Similarity=0.329  Sum_probs=102.6

Q ss_pred             hhcceecc---ccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeH
Q 046022           25 LREAKVRD---LTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTM  101 (262)
Q Consensus        25 l~~~~v~d---lm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~  101 (262)
                      +.+.++++   +|.  ++++++++++|+.+|++.|.++++.++||+|.+                      ++++|+|+.
T Consensus         5 ~~~~~v~~~~~~~~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----------------------~~~~Givt~   60 (144)
T 2nyc_A            5 FLKIPIGDLNIITQ--DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN----------------------GYLINVYEA   60 (144)
T ss_dssp             GGGSBGGGSSCCBC--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT----------------------CBEEEEEEH
T ss_pred             hhhcchhhcCCCCC--CCceEECCCCcHHHHHHHHHHcCcceeeEEcCC----------------------CcEEEEEcH
Confidence            45678888   664  567899999999999999999999999999864                      589999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCC---CCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCc
Q 046022          102 LDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCP---EGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRME  177 (262)
Q Consensus       102 ~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~---~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~  177 (262)
                      .|++.++....            ......++.++|...+   .+  +.++.+++++.+|++.|. ++++++||+ ++.  
T Consensus        61 ~dl~~~~~~~~------------~~~~~~~v~~~m~~~~~~~~~--~~~v~~~~~l~~~~~~m~~~~~~~l~Vv-d~~--  123 (144)
T 2nyc_A           61 YDVLGLIKGGI------------YNDLSLSVGEALMRRSDDFEG--VYTCTKNDKLSTIMDNIRKARVHRFFVV-DDV--  123 (144)
T ss_dssp             HHHHHHHHTC----------------CCSBHHHHHHHCC--------CEECTTSBHHHHHHHHHHHTCSEEEEE-CTT--
T ss_pred             HHHHHHhcccc------------cccCCccHHHHHhcCccccCC--CeEECCCCcHHHHHHHHHHCCCCEEEEE-CCC--
Confidence            99998876421            0122457899886311   02  578999999999999998 799999996 422  


Q ss_pred             ccccceecccCCeeeEecHHHHHHHHHhh
Q 046022          178 NISGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       178 ~~~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                                ++.+|+||++||++++.+.
T Consensus       124 ----------g~~~Giit~~dil~~l~~~  142 (144)
T 2nyc_A          124 ----------GRLVGVLTLSDILKYILLG  142 (144)
T ss_dssp             ----------SBEEEEEEHHHHHHHHHHC
T ss_pred             ----------CCEEEEEEHHHHHHHHHhc
Confidence                      2346999999999998764

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.66  E-value=2.7e-16  Score=121.50  Aligned_cols=121  Identities=26%  Similarity=0.360  Sum_probs=99.0

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      ++|+|+|.  ++++++++++|+.+|++.|.++++.++||+| +                      ++++|+|+..|++.+
T Consensus         1 m~v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~----------------------~~~~G~it~~dl~~~   55 (125)
T 1pbj_A            1 MRVEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVK-E----------------------GVRVGIVTTWDVLEA   55 (125)
T ss_dssp             -CHHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T----------------------TEEEEEEEHHHHHHH
T ss_pred             CCHHHhcC--CCceEECCCCcHHHHHHHHHHcCCCEEEEEe-C----------------------CeeEEEEeHHHHHHH
Confidence            46899995  3678999999999999999999999999999 4                      589999999999987


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      +.....             ....+++++|..   +  +.++.+++++.++++.|. ++++++||+.+   +++       
T Consensus        56 ~~~~~~-------------~~~~~v~~~m~~---~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---~~~-------  107 (125)
T 1pbj_A           56 IAEGDD-------------LAEVKVWEVMER---D--LVTISPRATIKEAAEKMVKNVVWRLLVEED---DEI-------  107 (125)
T ss_dssp             HHHTCC-------------TTTSBHHHHCBC---G--GGEECTTSCHHHHHHHHHHHTCSEEEEEET---TEE-------
T ss_pred             HhcCCc-------------ccccCHHHHcCC---C--CeEECCCCCHHHHHHHHHhcCCcEEEEEEC---CEE-------
Confidence            764211             124579999972   2  578999999999999998 79999999633   233       


Q ss_pred             cCCeeeEecHHHHHHHHHh
Q 046022          187 SASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~~  205 (262)
                          +|+||++||++++.+
T Consensus       108 ----~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A          108 ----IGVISATDILRAKMA  122 (125)
T ss_dssp             ----EEEEEHHHHHHHHC-
T ss_pred             ----EEEEEHHHHHHHHHh
Confidence                599999999998865

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.66  E-value=3.5e-16  Score=129.08  Aligned_cols=144  Identities=14%  Similarity=0.273  Sum_probs=105.2

Q ss_pred             HhhhcceeccccccCC--cEEEE--cCCCCHHHHHHHHHhCCCceEEEe--cCCCCcccCCCcccccccccccCcCCeEE
Q 046022           23 RLLREAKVRDLTAEKR--RIVEV--PHTASLAHTMNALVANKVVAVPVA--APPGQWIGAGGSMIMESDKQTGAVRKHYI   96 (262)
Q Consensus        23 ~~l~~~~v~dlm~~~~--~lv~v--~~~~tv~eA~~~L~~~~i~s~PVv--d~~~~~~~~~~~~~~~~d~~~~~~~~~~v   96 (262)
                      .++...+|+|+|....  +++++  ++++|+.+|++.|.++++.++||+  |++                      ++++
T Consensus         6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~----------------------~~lv   63 (185)
T 2j9l_A            6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES----------------------QRLV   63 (185)
T ss_dssp             ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT----------------------CBEE
T ss_pred             hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCC----------------------CeEE
Confidence            5778899999996532  26778  999999999999999999999999  443                      6899


Q ss_pred             EEEeHHHHHHHHhCCC----CCCCC-----CC--CcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cC
Q 046022           97 GMLTMLDILAHIAGDD----QMNGS-----DD--APDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KG  164 (262)
Q Consensus        97 Givs~~Dil~~l~~~~----~l~~~-----~~--~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g  164 (262)
                      |+|+..|++.++....    .+...     ..  ...........+|+++|..   .  +.++.+++++.+|+++|. ++
T Consensus        64 Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~---~--~~~v~~~~~l~~a~~~m~~~~  138 (185)
T 2j9l_A           64 GFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDL---S--PFTVTDLTPMEIVVDIFRKLG  138 (185)
T ss_dssp             EEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGGEES---S--CCEEETTSBHHHHHHHHHHHT
T ss_pred             EEEEHHHHHHHHHhhcccCCCccccceeecccCCcccccccccCccHHHhhCc---C--CeEeCCCCCHHHHHHHHHhCC
Confidence            9999999998865310    00000     00  0000011234689999972   2  578999999999999998 79


Q ss_pred             CCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          165 IHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       165 ~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ++++||+. +             |+.+|+||++||++++.+..
T Consensus       139 ~~~l~Vvd-~-------------g~~vGiit~~dll~~l~~~~  167 (185)
T 2j9l_A          139 LRQCLVTH-N-------------GRLLGIITKKDVLKHIAQMA  167 (185)
T ss_dssp             CSEEEEEE-T-------------TEEEEEEEHHHHHHHHHHHC
T ss_pred             CcEEEEEE-C-------------CEEEEEEEHHHHHHHHHHhh
Confidence            99999963 2             13359999999999998764

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.65  E-value=6.4e-16  Score=125.68  Aligned_cols=134  Identities=16%  Similarity=0.231  Sum_probs=104.0

Q ss_pred             hcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHH
Q 046022           26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDIL  105 (262)
Q Consensus        26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil  105 (262)
                      ...+|+|+|..  +++++++++|+.+|++.|.++++.++||+|.+                      ++++|+|+..||+
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~----------------------~~lvGivt~~dl~   58 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN----------------------KKLLGIVSQRDLL   58 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT----------------------CBEEEEEEHHHHH
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC----------------------CcEEEEEeHHHHH
Confidence            35689999953  67799999999999999999999999999864                      6899999999999


Q ss_pred             HHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccccccee
Q 046022          106 AHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVEL  184 (262)
Q Consensus       106 ~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~  184 (262)
                      .++.....-     ...........++.++|..   +  +.++.++++|.+|+++|. ++++++||+.+   +++     
T Consensus        59 ~~~~~~~~~-----~~~~~~~~~~~~v~~im~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---g~l-----  120 (160)
T 2o16_A           59 AAQESSLQR-----SAQGDSLAFETPLFEVMHT---D--VTSVAPQAGLKESAIYMQKHKIGCLPVVAK---DVL-----  120 (160)
T ss_dssp             HHHHHHCC--------------CCCBHHHHSCS---C--EEEBCTTSBHHHHHHHHHHTTCSCEEEEET---TEE-----
T ss_pred             HHHHHhhcc-----cccccchhcccCHHHHhcC---C--CeEECCCCCHHHHHHHHHHhCCCEEEEEEC---CEE-----
Confidence            887631000     0000011235689999972   3  689999999999999998 78999999633   233     


Q ss_pred             cccCCeeeEecHHHHHHHHHhhc
Q 046022          185 VESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       185 ~~~~~~~giITqsDIir~L~~~~  207 (262)
                            +|+||.+||++++.+..
T Consensus       121 ------vGiit~~dil~~~~~~~  137 (160)
T 2o16_A          121 ------VGIITDSDFVTIAINLL  137 (160)
T ss_dssp             ------EEEECHHHHHHHHHHHH
T ss_pred             ------EEEEEHHHHHHHHHHHh
Confidence                  59999999999988754

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.65  E-value=3e-16  Score=126.61  Aligned_cols=126  Identities=15%  Similarity=0.236  Sum_probs=103.5

Q ss_pred             ceeccccccC----CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022           28 AKVRDLTAEK----RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD  103 (262)
Q Consensus        28 ~~v~dlm~~~----~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D  103 (262)
                      .+|+|+|..+    ++++++++++|+.+|++.|.++++.++||.+ +                      ++++|+|+..|
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~----------------------~~~~Givt~~d   63 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-G----------------------DDIAGIVTERD   63 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-S----------------------SSEEEEEEHHH
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-C----------------------CEEEEEEEHHH
Confidence            4799999754    5688999999999999999999999999965 3                      68999999999


Q ss_pred             HHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          104 ILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       104 il~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      +++++.....            .....+++++|..   .  +.++.+++++.+|+++|. ++++++||+. +  ++    
T Consensus        64 l~~~~~~~~~------------~~~~~~v~~~m~~---~--~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~--g~----  119 (157)
T 4fry_A           64 YARKVVLQER------------SSKATRVEEIMTA---K--VRYVEPSQSTDECMALMTEHRMRHLPVLD-G--GK----  119 (157)
T ss_dssp             HHHHSGGGTC------------CSSSCBHHHHSBS---S--CCCBCTTSBHHHHHHHHHHHTCSEEEEEE-T--TE----
T ss_pred             HHHHHHhccC------------CccccCHHHHcCC---C--CcEECCCCcHHHHHHHHHHcCCCEEEEEE-C--CE----
Confidence            9998764210            1124589999973   2  578999999999999998 6999999963 2  13    


Q ss_pred             eecccCCeeeEecHHHHHHHHHhhc
Q 046022          183 ELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                             .+|+||++||++++....
T Consensus       120 -------~~Giit~~dil~~l~~~~  137 (157)
T 4fry_A          120 -------LIGLISIGDLVKSVIADQ  137 (157)
T ss_dssp             -------EEEEEEHHHHHHHHHTTC
T ss_pred             -------EEEEEEHHHHHHHHHHHH
Confidence                   359999999999998765

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.64  E-value=1.5e-15  Score=122.84  Aligned_cols=139  Identities=13%  Similarity=0.205  Sum_probs=103.0

Q ss_pred             hhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCce-EEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022           25 LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVA-VPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD  103 (262)
Q Consensus        25 l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s-~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D  103 (262)
                      ....+|+|+|.  ++++++++++|+.+|++.|.++++.+ +||+|.                       ++++|+|+..|
T Consensus        13 ~~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-----------------------~~~vGivt~~d   67 (157)
T 1o50_A           13 MKVKDVCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-----------------------NKLVGMIPVMH   67 (157)
T ss_dssp             CBHHHHTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-----------------------TEEEEEEEHHH
T ss_pred             hccccHhhccc--CCCceECCCCCHHHHHHHHHhCCCCccEEEEEC-----------------------CEEEEEEEHHH
Confidence            35668999995  47889999999999999999999999 999985                       38999999999


Q ss_pred             HHHHHhCC--CCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccc
Q 046022          104 ILAHIAGD--DQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENIS  180 (262)
Q Consensus       104 il~~l~~~--~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~  180 (262)
                      |++++...  ..+................++.++|..      +.++.+++++.+|+++|. ++++++||+ +++     
T Consensus        68 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~------~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~~-----  135 (157)
T 1o50_A           68 LLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLD------PVYVHMDTPLEEALKLMIDNNIQEMPVV-DEK-----  135 (157)
T ss_dssp             HHHHHHHHHHCCCC-------CCCCCSSCBHHHHCBC------CCCBCTTSBHHHHHHHHHHHTCSEEEEE-CTT-----
T ss_pred             HHHHHhhhHHhhhccHHHHHHHHHHHcCCcHHHHcCC------CeEECCCCCHHHHHHHHHHCCCcEEEEE-cCC-----
Confidence            99875410  000000000000011235689999972      367999999999999998 799999996 422     


Q ss_pred             cceecccCCeeeEecHHHHHHHHHhhc
Q 046022          181 GVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       181 g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                             ++.+|+||++||++++.+..
T Consensus       136 -------g~~vGiit~~dll~~l~~~~  155 (157)
T 1o50_A          136 -------GEIVGDLNSLEILLALWKGR  155 (157)
T ss_dssp             -------SCEEEEEEHHHHHHHHHHSC
T ss_pred             -------CEEEEEEEHHHHHHHHHHhh
Confidence                   23469999999999997653

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.62  E-value=1.8e-15  Score=122.21  Aligned_cols=138  Identities=9%  Similarity=0.189  Sum_probs=103.5

Q ss_pred             hhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHH
Q 046022           25 LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDI  104 (262)
Q Consensus        25 l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Di  104 (262)
                      +...+|+|+|.  ++++++++++|+.+|++.|.++++.++||+|.+.                    .++++|+|+..||
T Consensus        10 ~~~~~v~dim~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~--------------------~~~~~Givt~~dl   67 (164)
T 2pfi_A           10 SHHVRVEHFMN--HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTE--------------------SQILVGIVQRAQL   67 (164)
T ss_dssp             CCSCBHHHHCB--CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTT--------------------TCBEEEEEEHHHH
T ss_pred             ccCCCHHHHcC--CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCC--------------------CCEEEEEEEHHHH
Confidence            45688999995  3678999999999999999999999999998610                    1689999999999


Q ss_pred             HHHHhCCCCCCCCCCCcchHHhhhccccccccccCC-CCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          105 LAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCP-EGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       105 l~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~-~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      +.++......         .......++.++|.... ..+.+.++.+++++.+|+++|. ++++++||+. ++       
T Consensus        68 ~~~~~~~~~~---------~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g-------  130 (164)
T 2pfi_A           68 VQALQAEPPS---------RAPGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RG-------  130 (164)
T ss_dssp             HHHHHC----------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TT-------
T ss_pred             HHHHHhhccc---------cCCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CC-------
Confidence            9887642110         00012346888886320 0111367999999999999998 7999999964 21       


Q ss_pred             eecccCCeeeEecHHHHHHHHHhhc
Q 046022          183 ELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                            +.+|+||++||++++.+..
T Consensus       131 ------~l~Giit~~dil~~~~~~~  149 (164)
T 2pfi_A          131 ------RAVGCVSWVEMKKAISNLT  149 (164)
T ss_dssp             ------EEEEEEEHHHHHHHHHHHH
T ss_pred             ------EEEEEEEHHHHHHHHHhhh
Confidence                  2359999999999998754

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.62  E-value=1.6e-15  Score=126.04  Aligned_cols=125  Identities=15%  Similarity=0.266  Sum_probs=102.7

Q ss_pred             cceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022           27 EAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA  106 (262)
Q Consensus        27 ~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~  106 (262)
                      ..+|+|+|.  ++++++++++|+.+|++.|.++++.++||++.+                      ++++|+|+..||+.
T Consensus         8 ~~~v~~im~--~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~----------------------g~~vGivt~~dl~~   63 (184)
T 1pvm_A            8 FMRVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN----------------------GNDVGLLSERSIIK   63 (184)
T ss_dssp             CCBGGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT----------------------SCEEEEEEHHHHHH
T ss_pred             ccCHHHhcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC----------------------CcEEEEEeHHHHHH
Confidence            478999995  478899999999999999999999999999864                      58999999999998


Q ss_pred             HHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceec
Q 046022          107 HIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELV  185 (262)
Q Consensus       107 ~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~  185 (262)
                      ++.....            .....+++++|..   .  +.++.+++++.+|+++|. ++++++||+ ++.          
T Consensus        64 ~~~~~~~------------~~~~~~v~~im~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~~----------  115 (184)
T 1pvm_A           64 RFIPRNK------------KPDEVPIRLVMRK---P--IPKVKSDYDVKDVAAYLSENGLERCAVV-DDP----------  115 (184)
T ss_dssp             HTGGGCC------------CGGGSBGGGTSBS---S--CCEEETTCBHHHHHHHHHHHTCSEEEEE-CTT----------
T ss_pred             HHhhccc------------CcccCCHHHHhCC---C--CcEECCCCCHHHHHHHHHHcCCcEEEEE-cCC----------
Confidence            8763110            1224589999973   2  578999999999999998 699999996 432          


Q ss_pred             ccCCeeeEecHHHHHHHHHh
Q 046022          186 ESASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       186 ~~~~~~giITqsDIir~L~~  205 (262)
                        ++.+|+||+.||++++..
T Consensus       116 --g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A          116 --GRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             --CCEEEEEEHHHHTTTSCH
T ss_pred             --CeEEEEEEHHHHHHHHHh
Confidence              234699999999998766

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.62  E-value=2.8e-16  Score=123.09  Aligned_cols=125  Identities=18%  Similarity=0.311  Sum_probs=98.4

Q ss_pred             hhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHH
Q 046022           25 LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDI  104 (262)
Q Consensus        25 l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Di  104 (262)
                      +.-.+|+|+|..  +++++++++|+.+|++.|.++++.++||+|++                      ++++|+|+..|+
T Consensus         5 ~~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----------------------~~~~Givt~~dl   60 (133)
T 1y5h_A            5 FTMTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDD----------------------DRLHGMLTDRDI   60 (133)
T ss_dssp             ---CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGG----------------------GBEEEEEEHHHH
T ss_pred             hhhcCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECCC----------------------CeEEEEEeHHHH
Confidence            344689999963  67789999999999999999999999999754                      689999999999


Q ss_pred             HH-HHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          105 LA-HIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       105 l~-~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      +. ++.....             ....+++++|..   .  +.++.+++++.+|++.|. ++.+++||+.+ +  ++   
T Consensus        61 ~~~~~~~~~~-------------~~~~~v~~~m~~---~--~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g--~~---  116 (133)
T 1y5h_A           61 VIKGLAAGLD-------------PNTATAGELARD---S--IYYVDANASIQEMLNVMEEHQVRRVPVISE-H--RL---  116 (133)
T ss_dssp             HHTTGGGTCC-------------TTTSBHHHHHTT---C--CCCEETTCCHHHHHHHHHHHTCSEEEEEET-T--EE---
T ss_pred             HHHHHhcCCC-------------ccccCHHHHhcC---C--CEEECCCCCHHHHHHHHHHcCCCEEEEEEC-C--EE---
Confidence            84 4443110             123589999973   2  578999999999999998 79999999643 1  33   


Q ss_pred             eecccCCeeeEecHHHHHHHHHh
Q 046022          183 ELVESASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIir~L~~  205 (262)
                              +|+||++||++++.+
T Consensus       117 --------~Giit~~dil~~l~~  131 (133)
T 1y5h_A          117 --------VGIVTEADIARHLPE  131 (133)
T ss_dssp             --------EEEEEHHHHHHTCC-
T ss_pred             --------EEEEEHHHHHHHHHh
Confidence                    599999999998754

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.59  E-value=7.4e-15  Score=129.30  Aligned_cols=63  Identities=14%  Similarity=0.307  Sum_probs=55.1

Q ss_pred             hhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHH
Q 046022           25 LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDI  104 (262)
Q Consensus        25 l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Di  104 (262)
                      ..+++|+|+|.  ++++++.+++++.+|.++|.++++.++||++..+                    .++++|+|+..||
T Consensus        10 ~~~~~v~diMt--~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~--------------------~~~LvGiIt~~dl   67 (250)
T 2d4z_A           10 KYNIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPD--------------------TNTLLGSIDRTEV   67 (250)
T ss_dssp             CSSCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTT--------------------TCBEEEEEEHHHH
T ss_pred             cCCCChHHhcC--CCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCC--------------------CCeEEEEEEHHHH
Confidence            45788999995  4789999999999999999999999999998642                    1589999999999


Q ss_pred             HHHHh
Q 046022          105 LAHIA  109 (262)
Q Consensus       105 l~~l~  109 (262)
                      ++++.
T Consensus        68 ~~~l~   72 (250)
T 2d4z_A           68 EGLLQ   72 (250)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98654

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.56  E-value=1.7e-14  Score=122.88  Aligned_cols=130  Identities=16%  Similarity=0.186  Sum_probs=104.2

Q ss_pred             chHHHHHhh--hcceeccccccCCcEEEEcCCCCHHHHHHHHHhC---CCceEEEecCCCCcccCCCcccccccccccCc
Q 046022           17 AADENQRLL--REAKVRDLTAEKRRIVEVPHTASLAHTMNALVAN---KVVAVPVAAPPGQWIGAGGSMIMESDKQTGAV   91 (262)
Q Consensus        17 ~~~~~~~~l--~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~---~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~   91 (262)
                      ....+++.|  .+.+|+++|.  ++++++++++|+.+|++.|.++   ++..+||+|..                     
T Consensus        41 e~~~i~~~l~~~~~~v~~iM~--~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~---------------------   97 (205)
T 3kxr_A           41 QRQRFELYDQYSENEIGRYTD--HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA---------------------   97 (205)
T ss_dssp             HHHHHHHHHHSCTTCGGGGCB--CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT---------------------
T ss_pred             HHHHHHHHhCCCcchHHhhcc--CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC---------------------
Confidence            334444433  5568999995  4788999999999999999998   89999999864                     


Q ss_pred             CCeEEEEEeHHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEe
Q 046022           92 RKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALV  170 (262)
Q Consensus        92 ~~~~vGivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V  170 (262)
                       ++++|+|+..|++...                   ...+|+++|..   +  +.++.+++++.+|+++|. ++++++||
T Consensus        98 -~~lvGivt~~dll~~~-------------------~~~~v~~im~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpV  152 (205)
T 3kxr_A           98 -DKYLGTVRRYDIFKHE-------------------PHEPLISLLSE---D--SRALTANTTLLDAAEAIEHSREIELPV  152 (205)
T ss_dssp             -CBEEEEEEHHHHTTSC-------------------TTSBGGGGCCS---S--CCCEETTSCHHHHHHHHHTSSCSEEEE
T ss_pred             -CeEEEEEEHHHHHhCC-------------------CcchHHHHhcC---C--CeEECCCCCHHHHHHHHHhcCCCEEEE
Confidence             6899999999976421                   13479999972   3  578999999999999998 79999999


Q ss_pred             ecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          171 PMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       171 ~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      + ++.            |+.+||||..||++.+.+..
T Consensus       153 V-D~~------------g~lvGiIT~~Dil~~i~~e~  176 (205)
T 3kxr_A          153 I-DDA------------GELIGRVTLRAATALVREHY  176 (205)
T ss_dssp             E-CTT------------SBEEEEEEHHHHHHHHHHHH
T ss_pred             E-cCC------------CeEEEEEEHHHHHHHHHHHH
Confidence            6 422            23469999999999998754

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.54  E-value=1.3e-13  Score=119.38  Aligned_cols=193  Identities=19%  Similarity=0.210  Sum_probs=120.5

Q ss_pred             cceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022           27 EAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA  106 (262)
Q Consensus        27 ~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~  106 (262)
                      ..+|+|+|..  +++++++++++.+|++.|.++++.++||+|++                      ++++|++|..|+++
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~----------------------~~l~Giit~~di~~   61 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN----------------------NHLLGMLSTSNITA   61 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT----------------------CBEEEEEEHHHHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC----------------------CEEEEEEEHHHHHH
Confidence            4689999953  56799999999999999999999999999965                      68999999999999


Q ss_pred             HHhCCCCCCC---CCCCcchHHhhh------------------------ccccccccccCCCCCeeEEeCCCCCHHHHHH
Q 046022          107 HIAGDDQMNG---SDDAPDDLDKKM------------------------SAPVSSIIGHCPEGLSLWTLSPNTSILDCME  159 (262)
Q Consensus       107 ~l~~~~~l~~---~~~~~~~~~~~~------------------------~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~  159 (262)
                      ++........   ......++.+.+                        ...+.+.+.   .+. ++.+..   -.++.+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~---~~~-ivIvgd---r~~~~~  134 (245)
T 3l2b_A           62 TYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFIS---EGD-IAIAGD---RAEIQA  134 (245)
T ss_dssp             HHHCCCCTTHHHHTTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCC---TTC-EEEECS---CHHHHH
T ss_pred             HHHHhhhhhhhhhccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCC---CCC-EEEECC---CHHHHH
Confidence            8875211000   000000000000                        111222222   122 333322   256666


Q ss_pred             HHh-cCCCeeEeecCCCCc-ccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcccC-cCeEEEeCCCc
Q 046022          160 VFS-KGIHRALVPMDSRME-NISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALN-ENVFAITESTK  236 (262)
Q Consensus       160 ~m~-~g~~rv~V~~~~~~~-~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~~-~~v~tv~~~~~  236 (262)
                      .+. +|+..+++..+.... .+.  .+........+.|..|.......-.      ...++++  +|+ +++++++++++
T Consensus       135 ~~i~~~~~~liit~~~~~~~~v~--~~a~~~~~~~i~t~~d~~~~~~~~~------~~~~v~~--im~~~~~~~~~~~~~  204 (245)
T 3l2b_A          135 ELIELKVSLLIVTGGHTPSKEII--ELAKKNNITVITTPHDSFTASRLIV------QSLPVDY--VMTKDNLVAVSTDDL  204 (245)
T ss_dssp             HHHHTTCSEEEECTTCCCCHHHH--HHHHHHTCEEEECSSCHHHHHHHGG------GGSBHHH--HSBCTTCCCEETTSB
T ss_pred             HHHHcCCCEEEECCCCCCCHHHH--HHHHHcCCeEEEeCCChHHHHHHHh------cCCceee--EecCCccEEECCCCc
Confidence            554 788877664221110 000  0001112234666666544322111      1356777  498 89999999999


Q ss_pred             HHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          237 VIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       237 ~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +.+|+++|.+++++++||||++|.
T Consensus       205 ~~~~~~~m~~~~~~~~pVvd~~~~  228 (245)
T 3l2b_A          205 VEDVKVTMSETRYSNYPVIDENNK  228 (245)
T ss_dssp             HHHHHHHHHHHCCSEEEEECTTCB
T ss_pred             HHHHHHHHHhcCCceEEEEcCCCe
Confidence            999999999999999999998774

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.50  E-value=5e-14  Score=135.94  Aligned_cols=131  Identities=11%  Similarity=0.187  Sum_probs=102.8

Q ss_pred             hhcceeccccccCCcEEEEcCC-CCHHHHHHHHHhCCCceEEEec-CCCCcccCCCcccccccccccCcCCeEEEEEeHH
Q 046022           25 LREAKVRDLTAEKRRIVEVPHT-ASLAHTMNALVANKVVAVPVAA-PPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTML  102 (262)
Q Consensus        25 l~~~~v~dlm~~~~~lv~v~~~-~tv~eA~~~L~~~~i~s~PVvd-~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~  102 (262)
                      |...+|+|+|.  +++++++++ +|+.+|++.|.++++.++||+| ++                      ++++|+||..
T Consensus       381 l~~~~V~diM~--~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~----------------------g~lvGiVt~~  436 (527)
T 3pc3_A          381 WWSLAIAELEL--PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDD----------------------GSVLGVVGQE  436 (527)
T ss_dssp             TTTSBGGGGCC--CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT----------------------CCEEEEEEHH
T ss_pred             ccCCcHHHhCc--CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCC----------------------CEEEEEEEHH
Confidence            45688999995  477899999 9999999999999999999998 43                      6899999999


Q ss_pred             HHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCeeEeecCCCCcccccc
Q 046022          103 DILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       103 Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv~V~~~~~~~~~~g~  182 (262)
                      ||++++....             .....+|+++|..   +  +.++.++++|.+++++|.+. +-+||+.++..      
T Consensus       437 Dll~~l~~~~-------------~~~~~~V~~im~~---~--~~~v~~~~~l~~a~~~m~~~-~~~pVVd~~~~------  491 (527)
T 3pc3_A          437 TLITQIVSMN-------------RQQSDPAIKALNK---R--VIRLNESEILGKLARVLEVD-PSVLILGKNPA------  491 (527)
T ss_dssp             HHHHHHHHHC-------------CCTTSBGGGGEET---T--CCEEETTSBHHHHHHHHTTC-SEEEEEEECSS------
T ss_pred             HHHHHHHhcc-------------CcCCCcHHHHhcC---C--CeEECCCCcHHHHHHHHhhC-CEEEEEeCCcc------
Confidence            9999887421             1224589999973   3  67899999999999999732 33577543210      


Q ss_pred             eecccCCeeeEecHHHHHHHHHhhc
Q 046022          183 ELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                         ..++.+||||++||++++.++.
T Consensus       492 ---~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          492 ---GKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             ---SCEEEEEEEEHHHHHHHHHTCC
T ss_pred             ---cCCeEEEEEEHHHHHHHHHhcc
Confidence               0134469999999999998864

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.48  E-value=7e-14  Score=113.93  Aligned_cols=116  Identities=11%  Similarity=0.171  Sum_probs=94.2

Q ss_pred             HhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHH
Q 046022          125 DKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFM  203 (262)
Q Consensus       125 ~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L  203 (262)
                      +..+..++.++|.. .++  +.++.+++|+.+|+.+|. +|++++||+ ++.            ++.+|+||..|+++++
T Consensus        10 e~~l~~~~~~iM~P-~~~--v~~v~~~~t~~~a~~~m~~~~~s~~pVv-d~~------------~~lvGiit~~Di~~~~   73 (156)
T 3k6e_A           10 ETFLLGQEETFLTP-AKN--LAVLIDTHNADHATLLLSQMTYTRVPVV-TDE------------KQFVGTIGLRDIMAYQ   73 (156)
T ss_dssp             HHHHHTTGGGGEEE-TTS--SCCEETTSBHHHHHHHHTTSSSSEEEEE-CC-------------CBEEEEEEHHHHHHHH
T ss_pred             HHHhhccHHHhCcc-hhH--eEEECCcCCHHHHHHHHHHcCCcEEEEE-cCC------------CcEEEEEEecchhhhh
Confidence            34556789999973 234  688999999999999999 799999996 432            2345999999999999


Q ss_pred             HhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          204 MNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       204 ~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      .........+...++++  +|+++++++++++++.+|+++|.++++  +||||++|.
T Consensus        74 ~~~~~~~~~~~~~~v~~--im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~  126 (156)
T 3k6e_A           74 MEHDLSQEIMADTDIVH--MTKTDVAVVSPDFTITEVLHKLVDESF--LPVVDAEGI  126 (156)
T ss_dssp             HHHTCCHHHHTTSBGGG--TCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSB
T ss_pred             hhcccccccccccCHHH--hhcCCceecccccHHHHHHHHHHHcCC--eEEEecCCE
Confidence            87643334455678887  499999999999999999999998876  999999874

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.48  E-value=8.2e-14  Score=124.41  Aligned_cols=128  Identities=14%  Similarity=0.231  Sum_probs=102.9

Q ss_pred             HHHHHhh--hcceeccccccCCcEEEEcCCCCHHHHHHHHHhC-----CCceEEEecCCCCcccCCCcccccccccccCc
Q 046022           19 DENQRLL--REAKVRDLTAEKRRIVEVPHTASLAHTMNALVAN-----KVVAVPVAAPPGQWIGAGGSMIMESDKQTGAV   91 (262)
Q Consensus        19 ~~~~~~l--~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~-----~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~   91 (262)
                      ..++..+  .+.+|+++|.  ++++++++++|+.+|++.|.++     ++.++||+|.+                     
T Consensus       126 ~~i~~ll~~~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~---------------------  182 (286)
T 2oux_A          126 GEIKELLHYEDETAGAIMT--TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE---------------------  182 (286)
T ss_dssp             HHHHHHTTSCTTBHHHHCB--SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT---------------------
T ss_pred             HHHHHHhcCChHHHHHhCC--CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC---------------------
Confidence            3344444  4568999995  4788999999999999999998     88889999864                     


Q ss_pred             CCeEEEEEeHHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEe
Q 046022           92 RKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALV  170 (262)
Q Consensus        92 ~~~~vGivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V  170 (262)
                       ++++|+|+..|++...                   ...+|+++|..   +  +.++.+++++.+|+.+|. ++++++||
T Consensus       183 -~~lvGivt~~dll~~~-------------------~~~~v~~im~~---~--~~~v~~~~~l~ea~~~m~~~~~~~lpV  237 (286)
T 2oux_A          183 -NHLVGVISLRDLIVND-------------------DDTLIADILNE---R--VISVHVGDDQEDVAQTIRDYDFLAVPV  237 (286)
T ss_dssp             -CBEEEEEEHHHHTTSC-------------------TTSBHHHHSBS---C--CCCEETTSBHHHHHHHHHHHTCSEEEE
T ss_pred             -CeEEEEEEHHHHHcCC-------------------CCCcHHHHcCC---C--CeeecCCCCHHHHHHHHHHcCCcEEEE
Confidence             6899999999987531                   12479999972   3  578999999999999998 79999999


Q ss_pred             ecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          171 PMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       171 ~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      + ++.            |+.+|+||..||++++....
T Consensus       238 V-d~~------------g~lvGiIT~~Dil~~i~~e~  261 (286)
T 2oux_A          238 T-DYD------------DHLLGIVTVDDIIDVIDDEA  261 (286)
T ss_dssp             E-CTT------------CBEEEEEEHHHHHHHHHHHH
T ss_pred             E-cCC------------CeEEEEEEHHHHHHHHHHHh
Confidence            6 422            23469999999999987653

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.47  E-value=3.6e-14  Score=116.36  Aligned_cols=109  Identities=17%  Similarity=0.201  Sum_probs=86.5

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..+|+++|+.   +  ++++.+++++.+|+++|. ++++++||+ +++            |+.+|+||.+||++++....
T Consensus        17 ~~~V~diM~~---~--v~~v~~~~tl~~a~~~m~~~~~~~~pVv-d~~------------g~lvGiit~~Dll~~~~~~~   78 (170)
T 4esy_A           17 QVPIRDILTS---P--VVTVREDDTLDAVAKTMLEHQIGCAPVV-DQN------------GHLVGIITESDFLRGSIPFW   78 (170)
T ss_dssp             TSBGGGGCCS---C--CCCEETTSBHHHHHHHHHHTTCSEEEEE-CTT------------SCEEEEEEGGGGGGGTCCTT
T ss_pred             CCCHHHhcCC---C--CcEECCcCcHHHHHHHHHHcCCeEEEEE-cCC------------ccEEEEEEHHHHHHHHhhcc
Confidence            5699999972   3  688999999999999998 799999996 422            34569999999987643221


Q ss_pred             c------------------cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          208 S------------------ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       208 ~------------------~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      .                  ........++++  +|+++++++++++++.+|+++|.+++++++||||+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~  144 (170)
T 4esy_A           79 IYEASEILSRAIPAPEVEHLFETGRKLTASA--VMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD  144 (170)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHTTCBHHH--HCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET
T ss_pred             ccchhhhhhhccchhhHHhhhccccccchhh--hcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC
Confidence            0                  011223446676  59999999999999999999999999999999984

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.45  E-value=2.5e-13  Score=120.47  Aligned_cols=121  Identities=15%  Similarity=0.171  Sum_probs=97.7

Q ss_pred             hcceeccccccCCcEEEEcCCCCHHHHHHHHHhC-----CCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEe
Q 046022           26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALVAN-----KVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLT  100 (262)
Q Consensus        26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~-----~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs  100 (262)
                      ...+++++|.  ++++++++++|+.+|++.|.++     ++.++||+|..                      ++++|+|+
T Consensus       133 ~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~----------------------~~lvGivt  188 (278)
T 2yvy_A          133 EEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK----------------------GRLKGVLS  188 (278)
T ss_dssp             CTTBGGGTCB--SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT----------------------CBEEEEEE
T ss_pred             CcchHHhhcC--CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC----------------------CCEEEEEE
Confidence            4578999995  4788999999999999999987     79999999864                      68999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccc
Q 046022          101 MLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENI  179 (262)
Q Consensus       101 ~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~  179 (262)
                      ..|++...                   ...+|+++|..   +  ++++.+++++.+|++.|. ++.+++||+ ++.    
T Consensus       189 ~~dll~~~-------------------~~~~v~~im~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~~----  239 (278)
T 2yvy_A          189 LRDLIVAD-------------------PRTRVAEIMNP---K--VVYVRTDTDQEEVARLMADYDFTVLPVV-DEE----  239 (278)
T ss_dssp             HHHHHHSC-------------------TTCBSTTTSBS---S--CCCEETTSBHHHHHHHHHHHTCSEEEEE-CTT----
T ss_pred             HHHHhcCC-------------------CCCcHHHHhCC---C--CeEEeCCCCHHHHHHHHHhcCCCEEEEE-eCC----
Confidence            99988531                   12479999962   3  578999999999999998 799999996 422    


Q ss_pred             ccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          180 SGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       180 ~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                              |+.+||||..||++++....
T Consensus       240 --------g~lvGivT~~Dil~~i~~e~  259 (278)
T 2yvy_A          240 --------GRLVGIVTVDDVLDVLEAEA  259 (278)
T ss_dssp             --------SBEEEEEEHHHHHHHC----
T ss_pred             --------CeEEEEEEHHHHHHHHHHHh
Confidence                    23469999999999887653

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.42  E-value=1.5e-12  Score=103.93  Aligned_cols=107  Identities=16%  Similarity=0.233  Sum_probs=88.5

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..+|+++|.. ..+  +.++.+++++.+|+++|. ++++++||+ +++.           ++.+|+||..|+++++....
T Consensus        22 ~~~v~diM~~-~~~--~~~v~~~~~~~~a~~~m~~~~~~~~pVv-d~~~-----------~~lvGivt~~dl~~~~~~~~   86 (148)
T 3lv9_A           22 EKKIREIMVP-RTD--MVCIYESDSEEKILAILKEEGVTRYPVC-RKNK-----------DDILGFVHIRDLYNQKINEN   86 (148)
T ss_dssp             TCBGGGTSEE-TTT--CCCEETTCCHHHHHHHHHHSCCSEEEEE-SSST-----------TSEEEEEEHHHHHHHHHHHS
T ss_pred             CCCHHHcccc-HHH--eEEECCCCCHHHHHHHHHHCCCCEEEEE-cCCC-----------CcEEEEEEHHHHHHHHhcCC
Confidence            4689999973 123  578999999999999998 799999996 4321           23469999999999887642


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                             ..+++++  | ++++++++++++.+|+++|.++++..+||||++|.
T Consensus        87 -------~~~v~~~--m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~  129 (148)
T 3lv9_A           87 -------KIELEEI--L-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGG  129 (148)
T ss_dssp             -------CCCGGGT--C-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSS
T ss_pred             -------CccHHHh--c-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCC
Confidence                   4567774  7 88999999999999999999999999999998774

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.39  E-value=1.2e-12  Score=102.31  Aligned_cols=108  Identities=11%  Similarity=0.245  Sum_probs=86.6

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..+|+++|.. ...  +.++.+++++.+|+++|. ++++++||+ +++.           ++.+|+||..|+++++....
T Consensus         5 ~~~v~~iM~~-~~~--v~~v~~~~~~~~a~~~m~~~~~~~~pVv-d~~~-----------~~~~Givt~~dl~~~~~~~~   69 (130)
T 3i8n_A            5 DVPVTQVMTP-RPV--VFRVDATMTINEFLDKHKDTPFSRPLVY-SEQK-----------DNIIGFVHRLELFKMQQSGS   69 (130)
T ss_dssp             --CCTTTSCC-BCC--CCEEETTSBHHHHHHHTTTCSCSCCEEE-SSST-----------TCEEEECCHHHHHHHHHTTT
T ss_pred             cCCHhhCCCc-HHH--EEEEcCCCCHHHHHHHHHhCCCCEEEEE-eCCC-----------CcEEEEEEHHHHHHHHhcCC
Confidence            3579999973 222  578999999999999998 689999996 4321           23469999999999887642


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                            ...+++++  | ++++++++++++.+|+++|.++++..+||+|++|.
T Consensus        70 ------~~~~v~~~--m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~  113 (130)
T 3i8n_A           70 ------GQKQLGAV--M-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGT  113 (130)
T ss_dssp             ------TTSBHHHH--S-EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSC
T ss_pred             ------CcCCHHHH--h-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCC
Confidence                  24567775  6 56899999999999999999999999999998875

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.38  E-value=3.1e-12  Score=101.04  Aligned_cols=109  Identities=15%  Similarity=0.194  Sum_probs=87.6

Q ss_pred             hccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022          128 MSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       128 ~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                      +..+|+++|..   .  +.++.+++++.+|+++|. ++++++||+.+++..           +.+|+||..|+++++...
T Consensus         3 ~~~~v~~im~~---~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~-----------~~~Givt~~dl~~~~~~~   66 (141)
T 2rih_A            3 MAIRTSELLKR---P--PVSLPETATIREVATELAKNRVGLAVLTARDNPK-----------RPVAVVSERDILRAVAQR   66 (141)
T ss_dssp             --CBGGGGCCS---C--CEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEE-----------EEEEEEEHHHHHHHHHTT
T ss_pred             cceEHHHHhcC---C--CeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcc-----------eeEEEEEHHHHHHHHhcC
Confidence            34689999972   3  688999999999999998 699999996432110           345999999999988754


Q ss_pred             cccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          207 ASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       207 ~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      ..     ...++++  +|++++++++++ ++.+|+++|.+++++.+||||++|.
T Consensus        67 ~~-----~~~~v~~--~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~  112 (141)
T 2rih_A           67 LD-----LDGPAMP--IANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGE  112 (141)
T ss_dssp             CC-----TTSBSGG--GCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred             CC-----CCCCHHH--HcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCc
Confidence            21     2467777  488899999999 9999999999999999999998764

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.37  E-value=1e-12  Score=103.07  Aligned_cols=109  Identities=12%  Similarity=0.164  Sum_probs=86.1

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      .+|+++|.. ..+  +.++.+++++.+|+++|. ++++++||+ +++.           ++.+|+||..||++++.....
T Consensus         2 ~~v~~iM~~-~~~--~~~v~~~~~v~~a~~~m~~~~~~~~pVv-~~~~-----------~~lvGivt~~dl~~~~~~~~~   66 (130)
T 3hf7_A            2 VSVNDIMVP-RNE--IVGIDINDDWKSIVRQLTHSPHGRIVLY-RDSL-----------DDAISMLRVREAYRLMTEKKE   66 (130)
T ss_dssp             CBHHHHSEE-GGG--CCEEETTSCHHHHHHHHHTCSSSEEEEE-SSSG-----------GGEEEEEEHHHHHHHHTSSSC
T ss_pred             cCHHHhCcc-HHH--EEEEcCCCCHHHHHHHHHHCCCCeEEEE-cCCC-----------CcEEEEEEHHHHHHHHhccCc
Confidence            368999962 123  678999999999999998 689999996 3221           234599999999998865321


Q ss_pred             cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          209 ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       209 ~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                          +...+++++  | ++++++++++++.+|+++|.++++..+||+|++|.
T Consensus        67 ----~~~~~v~~~--m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~  111 (130)
T 3hf7_A           67 ----FTKEIMLRA--A-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGD  111 (130)
T ss_dssp             ----CCHHHHHHH--S-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSC
T ss_pred             ----cchhhHHHh--c-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCC
Confidence                113456664  6 67899999999999999999999999999998874

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.37  E-value=2.6e-12  Score=105.63  Aligned_cols=107  Identities=14%  Similarity=0.135  Sum_probs=87.2

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..+|+++|.. ..+  +.++.+++++.+|+++|. ++++++||+ +++.           ++++|+||..||++++....
T Consensus        41 ~~~v~diM~~-~~~--~~~v~~~~~v~~a~~~m~~~~~~~~pVv-d~~~-----------~~lvGivt~~dl~~~~~~~~  105 (172)
T 3lhh_A           41 ERTISSLMVP-RSD--IVFLDLNLPLDANLRTVMQSPHSRFPVC-RNNV-----------DDMVGIISAKQLLSESIAGE  105 (172)
T ss_dssp             --CTTTTSEE-GGG--CCCEETTSCHHHHHHHHHTCCCSEEEEE-SSST-----------TSEEEEEEHHHHHHHHHTTC
T ss_pred             CCCHHHhCcc-HHH--eEEEcCCCCHHHHHHHHHhCCCCEEEEE-eCCC-----------CeEEEEEEHHHHHHHHhhcC
Confidence            5689999972 123  578999999999999998 689999996 4321           23469999999999886541


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                             ..+++++  | ++++++.+++++.+|+++|.++++..+||||++|.
T Consensus       106 -------~~~v~~i--m-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~  148 (172)
T 3lhh_A          106 -------RLELVDL--V-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGD  148 (172)
T ss_dssp             -------CCCGGGG--C-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred             -------cccHHHH--h-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCC
Confidence                   4577874  8 88999999999999999999999999999998774

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.36  E-value=8.9e-14  Score=137.04  Aligned_cols=139  Identities=9%  Similarity=0.067  Sum_probs=100.0

Q ss_pred             hcceeccccccCCcEEEEcCCCCHHHHHHHHH-hCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHH
Q 046022           26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALV-ANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDI  104 (262)
Q Consensus        26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~-~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Di  104 (262)
                      .+++|+|+|...++++++++++|+.|+.+.|. ++++.++||+|++                      ++++|+|+..|+
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~----------------------~~lvGiVt~~DL  508 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDAN----------------------GYLLGAISRKEI  508 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTT----------------------CBBCCEESHHHH
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecC----------------------CeEEEEEEHHHH
Confidence            67899999975568889999999999999999 8999999999964                      689999999999


Q ss_pred             HHHHhCCC-CCCCC----------CC-C-cchHHh---------------------hhccccccccccCCCCCeeEEeCC
Q 046022          105 LAHIAGDD-QMNGS----------DD-A-PDDLDK---------------------KMSAPVSSIIGHCPEGLSLWTLSP  150 (262)
Q Consensus       105 l~~l~~~~-~l~~~----------~~-~-~~~~~~---------------------~~~~~V~~im~~~~~~~~~~~v~~  150 (262)
                      ++.+.... .....          +. . ......                     ....+++++|+.   +  +.++++
T Consensus       509 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~---~--pitV~~  583 (632)
T 3org_A          509 VDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDV---S--PIVVTS  583 (632)
T ss_dssp             TTTTTTC-------------------------------------------------------CCSCCC---C--CCEEET
T ss_pred             HHHHHHHhhhcccccccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcC---C--CceecC
Confidence            88765421 00000          00 0 000000                     001248889973   3  578999


Q ss_pred             CCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHh
Q 046022          151 NTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       151 ~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~  205 (262)
                      ++++.+|+++|. +++|++||+ +++             +.+||||++||++.+.+
T Consensus       584 ~~~l~ea~~~M~~~~i~~lpVv-e~G-------------~lvGIVT~~Dll~~~~~  625 (632)
T 3org_A          584 YSLVRQLHFLFVMLMPSMIYVT-ERG-------------KLVGIVEREDVAYGYSN  625 (632)
T ss_dssp             TCBHHHHHHHHHHTCCSEEEEE-ETT-------------EEEEEEEGGGTEECCCC
T ss_pred             CCcHHHHHHHHHhcCCCEEEEE-ECC-------------EEEEEEehhhHHHHHhh
Confidence            999999999998 799999997 432             34599999999876543

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.36  E-value=2.7e-12  Score=98.47  Aligned_cols=102  Identities=20%  Similarity=0.274  Sum_probs=85.6

Q ss_pred             ccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc
Q 046022          131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE  209 (262)
Q Consensus       131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~  209 (262)
                      +|+++|..   +  +.++.+++++.+|++.|. ++.+++||+ +++            ++.+|+||..|+++++....  
T Consensus         2 ~v~~im~~---~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vv-d~~------------~~~~G~vt~~dl~~~~~~~~--   61 (122)
T 3kpb_A            2 LVKDILSK---P--PITAHSNISIMEAAKILIKHNINHLPIV-DEH------------GKLVGIITSWDIAKALAQNK--   61 (122)
T ss_dssp             BHHHHCCS---C--CCCEETTSBHHHHHHHHHHHTCSCEEEE-CTT------------SBEEEEECHHHHHHHHHTTC--
T ss_pred             chHHhhCC---C--CEEeCCCCcHHHHHHHHHHcCCCeEEEE-CCC------------CCEEEEEEHHHHHHHHHhcc--
Confidence            68899973   3  578999999999999998 789999996 322            23469999999999887642  


Q ss_pred             chhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          210 LKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       210 l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                            .++++  +|.+++.++++++++.+|+++|.+++++.+||+|++|.
T Consensus        62 ------~~v~~--~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~  104 (122)
T 3kpb_A           62 ------KTIEE--IMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRR  104 (122)
T ss_dssp             ------CBGGG--TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCB
T ss_pred             ------cCHHH--HhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCC
Confidence                  26777  48889999999999999999999999999999998774

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.35  E-value=2.1e-12  Score=103.82  Aligned_cols=108  Identities=15%  Similarity=0.220  Sum_probs=88.5

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..+|+++|.. ..+  +.++.+++++.+|+++|. ++++++||+.++..           ++.+|+||..||++++....
T Consensus        19 ~~~v~~iM~~-~~~--~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~-----------~~lvGivt~~dl~~~~~~~~   84 (153)
T 3oco_A           19 DKVASDVMVD-RTS--MSVVDVDETIADALLLYLEEQYSRFPVTADNDK-----------DKIIGYAYNYDIVRQARIDD   84 (153)
T ss_dssp             HCBHHHHSEE-GGG--CCCEETTSBHHHHHHHHHHHCCSEEEEEETTEE-----------EEEEEEEEHHHHHHHHHHHT
T ss_pred             CCEeeeEecc-hhh--eEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCC-----------CcEEEEEEHHHHHhHHhcCC
Confidence            5689999973 112  578999999999999998 79999999613221           23459999999999887642


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                             ..+++++  | ++++++.+++++.+|+++|.++++..+||||++|.
T Consensus        85 -------~~~v~~~--m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~  127 (153)
T 3oco_A           85 -------KAKISTI--M-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGG  127 (153)
T ss_dssp             -------TSBGGGT--C-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSC
T ss_pred             -------CCcHHHH--h-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCC
Confidence                   4577874  7 89999999999999999999999999999998874

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.35  E-value=3.6e-12  Score=101.87  Aligned_cols=114  Identities=17%  Similarity=0.253  Sum_probs=91.9

Q ss_pred             hHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHH
Q 046022          123 DLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLR  201 (262)
Q Consensus       123 ~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir  201 (262)
                      ...+.+..+|+++|.. .++  +.++.+++++.+|++.|. ++++++||+ +++            ++.+|+||..||++
T Consensus        21 ~l~~~l~~~v~dim~~-~~~--~~~v~~~~~~~~a~~~m~~~~~~~~~Vv-d~~------------~~~~Givt~~dl~~   84 (149)
T 3k2v_A           21 ALGRKLLLRVNDIMHT-GDE--IPHVGLQATLRDALLEITRKNLGMTAIC-DDD------------MNIIGIFTDGDLRR   84 (149)
T ss_dssp             HHHHHTTSBGGGTSBC-GGG--SCEECTTCBHHHHHHHHHHHTSSEEEEE-CTT------------CBEEEEEEHHHHHH
T ss_pred             hhchhcccCHHHHhcC-CCC--CeEECCCCcHHHHHHHHHhCCCcEEEEE-CCC------------CcEEEEecHHHHHH
Confidence            3445667799999972 112  578999999999999998 699999996 422            23469999999999


Q ss_pred             HHHhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCC
Q 046022          202 FMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSS  258 (262)
Q Consensus       202 ~L~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~  258 (262)
                      ++.....    ....+++++  |+++++++++++++.+|+++|.+++++.+||+|++
T Consensus        85 ~~~~~~~----~~~~~v~~~--m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  135 (149)
T 3k2v_A           85 VFDTGVD----MRDASIADV--MTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD  135 (149)
T ss_dssp             HHCSSSC----CTTCBHHHH--SEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT
T ss_pred             HHhcCCC----cccCcHHHH--cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence            8865322    235678874  88899999999999999999999999999999865

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.33  E-value=1.4e-12  Score=103.00  Aligned_cols=108  Identities=16%  Similarity=0.193  Sum_probs=86.0

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      .+|+++|.. ..+  +.++.+++++.+|+++|. ++++++||+ +++.           ++.+|+||..||++++.... 
T Consensus         3 ~~v~~iM~~-~~~--~~~v~~~~~v~~a~~~m~~~~~~~~pVv-d~~~-----------~~~vGivt~~dl~~~~~~~~-   66 (136)
T 3lfr_A            3 LQVRDIMVP-RSQ--MISIKATQTPREFLPAVIDAAHSRYPVI-GESH-----------DDVLGVLLAKDLLPLILKAD-   66 (136)
T ss_dssp             CBHHHHSEE-GGG--CCCEETTCCHHHHHHHHHHHCCSEEEEE-SSST-----------TCEEEEEEGGGGGGGGGSSS-
T ss_pred             CChHhcccc-HHH--EEEEcCCCCHHHHHHHHHhCCCCEEEEE-cCCC-----------CcEEEEEEHHHHHHHHHhcc-
Confidence            478999972 123  578999999999999998 799999996 4321           23459999999999875321 


Q ss_pred             cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          209 ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       209 ~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                          ....+++++  |++ ++++.+++++.+|+++|.++++..+||+|++|.
T Consensus        67 ----~~~~~v~~~--m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~  111 (136)
T 3lfr_A           67 ----GDSDDVKKL--LRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGG  111 (136)
T ss_dssp             ----GGGCCGGGT--CBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSC
T ss_pred             ----CCCcCHHHH--cCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCC
Confidence                124567774  755 899999999999999999999999999998874

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.32  E-value=4.3e-12  Score=101.11  Aligned_cols=114  Identities=10%  Similarity=0.120  Sum_probs=90.0

Q ss_pred             hhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHh
Q 046022          127 KMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       127 ~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~  205 (262)
                      ....+|+++|.. ..+  +.++.+++++.+|++.|. ++++++||+ +++            ++.+|+||..||++++..
T Consensus        12 l~~~~v~~im~~-~~~--~~~v~~~~~l~~a~~~~~~~~~~~~pVv-d~~------------~~~~Givt~~dl~~~~~~   75 (150)
T 3lqn_A           12 FQQIFVKDLMIS-SEK--VAHVQIGNGLEHALLVLVKSGYSAIPVL-DPM------------YKLHGLISTAMILDGILG   75 (150)
T ss_dssp             HHHCBHHHHSEE-GGG--SCCBCTTSBHHHHHHHHHHHTCSEEEEE-CTT------------CBEEEEEEHHHHHHHTBC
T ss_pred             hhcCChhhcccC-CCc--eEEECCCCcHHHHHHHHHHcCCcEEEEE-CCC------------CCEEEEEEHHHHHHHHHh
Confidence            335689999973 123  578999999999999998 799999996 322            234699999999998864


Q ss_pred             hcc-cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          206 HAS-ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       206 ~~~-~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      ..+ ........++++  +|+++++++++++++.+|+++|.++++  +||||++|.
T Consensus        76 ~~~~~~~~~~~~~v~~--~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~  127 (150)
T 3lqn_A           76 LERIEFERLEEMKVEQ--VMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGY  127 (150)
T ss_dssp             SSSBCGGGGGGCBGGG--TCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCB
T ss_pred             hcccchhHHhcCCHHH--HhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCc
Confidence            321 122345677887  488899999999999999999999997  999998774

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.32  E-value=8.7e-13  Score=126.74  Aligned_cols=174  Identities=14%  Similarity=0.087  Sum_probs=29.5

Q ss_pred             HHhhhcceeccc-cccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEe
Q 046022           22 QRLLREAKVRDL-TAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLT  100 (262)
Q Consensus        22 ~~~l~~~~v~dl-m~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs  100 (262)
                      +.++...+..++ |.  ++++++++++|+.+|++.|.+++++++||+|.++                   ..++++|+|+
T Consensus        90 ~~~v~~V~~~e~gM~--~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~-------------------~~g~lvGiVt  148 (503)
T 1me8_A           90 AAMVHAVKNFKAGFV--VSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGT-------------------PHGVLLGLVT  148 (503)
T ss_dssp             HHHHHHHHTTTC--------------------------------------------------------------------
T ss_pred             HHHHhhhhhcccCcc--cCCeEECCCCcHHHHHHHHHHcCceEEEEEECCC-------------------cCCeEEEEEE
Confidence            344555556666 85  4788999999999999999999999999998630                   0158999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccc
Q 046022          101 MLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENI  179 (262)
Q Consensus       101 ~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~  179 (262)
                      ..|++..  .               .....+|+++|.. .++  ++++.+++++.+|+++|. ++++++||+ |+.    
T Consensus       149 ~~Dl~~~--~---------------~~~~~~V~diM~~-~~~--~~tv~~~~sl~ea~~~m~~~~i~~lpVV-De~----  203 (503)
T 1me8_A          149 QRDYPID--L---------------TQTETKVSDMMTP-FSK--LVTAHQDTKLSEANKIIWEKKLNALPII-DDD----  203 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhh--h---------------ccccCcHHHHhCC-CCC--CEEEcCCCcHHHHHHHHHHcCCCEEEEE-cCC----
Confidence            9998753  1               0123589999973 223  578999999999999998 799999996 422    


Q ss_pred             ccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          180 SGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       180 ~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                              +..+|+||.+||++.+......     ....+.+  +.  -..+.. ....+.++.|.+.++..+.|-.++|
T Consensus       204 --------g~lvGiIT~~Dil~~~~~~~~~-----~d~~~~l--~v--~a~v~~-~~~~e~~~~l~e~gv~~l~Vd~~~g  265 (503)
T 1me8_A          204 --------QHLRYIVFRKDYDRSQVCHNEL-----VDSQKRY--LV--GAGINT-RDFRERVPALVEAGADVLCIDSSDG  265 (503)
T ss_dssp             --------------------------CCCC-----BCTTSCB--CC--EEEECS-SSHHHHHHHHHHHTCSEEEECCSCC
T ss_pred             --------CeEEEEEEecHHHHhhhcccch-----hcccccc--cc--ccccCc-hhHHHHHHHHHhhhccceEEecccC
Confidence                    2335999999999987653221     0011111  11  123444 6677888899888998776644444

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.31  E-value=1.7e-12  Score=101.11  Aligned_cols=107  Identities=23%  Similarity=0.320  Sum_probs=85.3

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      .+|+++|.. ..+  +.++.+++++.+|++.|. ++++++||+ +++.           ++.+|+||..|+++++.... 
T Consensus         3 ~~v~diM~~-~~~--~~~v~~~~~~~~a~~~m~~~~~~~~pVv-d~~~-----------~~~vGivt~~dl~~~~~~~~-   66 (127)
T 3nqr_A            3 QRVRDIMIP-RSQ--MITLKRNQTLDECLDVIIESAHSRFPVI-SEDK-----------DHIEGILMAKDLLPFMRSDA-   66 (127)
T ss_dssp             CBHHHHSEE-GGG--CCCEETTCCHHHHHHHHHHHCCSEEEEE-SSST-----------TCEEEEEEGGGGGGGGSTTC-
T ss_pred             cCHHHhccc-HHH--eEEEcCCCCHHHHHHHHHhCCCCEEEEE-cCCC-----------CcEEEEEEHHHHHHHHhccC-
Confidence            478999973 122  578999999999999998 699999996 4321           23469999999998765432 


Q ss_pred             cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          209 ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       209 ~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                           ...+++++  |+ +++++++++++.+|+++|.++++..+||+|++|.
T Consensus        67 -----~~~~v~~~--m~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~  110 (127)
T 3nqr_A           67 -----EAFSMDKV--LR-TAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGG  110 (127)
T ss_dssp             -----CCCCHHHH--CB-CCCEEETTCBHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             -----CCCCHHHH--cC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCC
Confidence                 24567775  75 4789999999999999999999999999998874

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.31  E-value=9.3e-12  Score=100.86  Aligned_cols=109  Identities=14%  Similarity=0.191  Sum_probs=86.9

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      .+|+++|..   +  +.++.+++++.+|+++|. ++++++||+ +++            ++.+|+||..||++++.....
T Consensus         5 ~~v~dim~~---~--~~~v~~~~tl~~a~~~m~~~~~~~~pVv-d~~------------~~lvGivt~~dl~~~~~~~~~   66 (160)
T 2o16_A            5 IKVEDMMTR---H--PHTLLRTHTLNDAKHLMEALDIRHVPIV-DAN------------KKLLGIVSQRDLLAAQESSLQ   66 (160)
T ss_dssp             CBGGGTSEE---S--CCCBCTTSBHHHHHHHHHHHTCSEEEEE-CTT------------CBEEEEEEHHHHHHHHHHHCC
T ss_pred             CcHHHHhcC---C--CeEECCCCcHHHHHHHHHHcCCCEEEEE-cCC------------CcEEEEEeHHHHHHHHHHhhc
Confidence            478999973   2  577999999999999998 799999996 422            234699999999999876432


Q ss_pred             cc----hhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          209 EL----KDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       209 ~l----~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                      ..    ......+++++  |+++++++++++++.+|+++|.+++++.+||||+ |
T Consensus        67 ~~~~~~~~~~~~~v~~i--m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g  118 (160)
T 2o16_A           67 RSAQGDSLAFETPLFEV--MHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-D  118 (160)
T ss_dssp             ---------CCCBHHHH--SCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-T
T ss_pred             ccccccchhcccCHHHH--hcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-C
Confidence            11    11235567774  8889999999999999999999999999999987 5

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.31  E-value=2e-11  Score=117.45  Aligned_cols=162  Identities=14%  Similarity=0.164  Sum_probs=116.4

Q ss_pred             eccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHh
Q 046022           30 VRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIA  109 (262)
Q Consensus        30 v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~  109 (262)
                      ..++|.  ++++++++++|+.+|+++|.+++++++||++...                    .++++|+|+.+|+..   
T Consensus       115 ~~~~m~--~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~--------------------~~~lvGiVt~rDl~~---  169 (511)
T 3usb_A          115 SESGVI--SDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLD--------------------ERKLVGIITNRDMRF---  169 (511)
T ss_dssp             SSSCSS--SSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTT--------------------TCBEEEEEEHHHHTT---
T ss_pred             cccccc--cCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCC--------------------CCEEEEEEEehHhhh---
Confidence            445553  3568999999999999999999999999998610                    168999999999743   


Q ss_pred             CCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccC
Q 046022          110 GDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESA  188 (262)
Q Consensus       110 ~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~  188 (262)
                      . .              ....+|+++|..  ++  ++++.+++++.+++++|. ++++++||+ |+.            +
T Consensus       170 ~-~--------------~~~~~V~~vM~~--~~--~vtv~~~~~l~eal~~m~~~~i~~lpVV-De~------------g  217 (511)
T 3usb_A          170 I-Q--------------DYSIKISDVMTK--EQ--LITAPVGTTLSEAEKILQKYKIEKLPLV-DNN------------G  217 (511)
T ss_dssp             C-C--------------CSSSBHHHHCCC--CC--CCCEETTCCHHHHHHHHHHHTCSEEEEE-CTT------------S
T ss_pred             h-c--------------cCCCcHHHhccc--CC--CEEECCCCCHHHHHHHHHHcCCCEEEEE-eCC------------C
Confidence            1 1              123589999973  23  578999999999999998 799999996 422            2


Q ss_pred             CeeeEecHHHHHHHHHhhcccchhhhccccchhcccCcC--eEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          189 SSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNEN--VFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       189 ~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~~~~--v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                      ...|+||..||++.+.....         ..+  ...+-  -..+.......+.++.|.+.|+..+.|-..+|
T Consensus       218 ~l~GiIT~~Dil~~~~~p~a---------~~D--~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id~a~g  279 (511)
T 3usb_A          218 VLQGLITIKDIEKVIEFPNS---------AKD--KQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHG  279 (511)
T ss_dssp             BEEEEEEHHHHHHHHHCTTC---------CBC--TTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEECSCT
T ss_pred             CEeeeccHHHHHHhhhcccc---------hhh--hccceeeeeeeeeccchHHHHHHHHhhccceEEeccccc
Confidence            34599999999998864211         111  11111  23444455566777777788888777765554

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.31  E-value=7.4e-12  Score=119.39  Aligned_cols=120  Identities=14%  Similarity=0.166  Sum_probs=99.9

Q ss_pred             hcceeccccccCCcEEEEcCCCCHHHHHHHHHhC-----CCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEe
Q 046022           26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALVAN-----KVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLT  100 (262)
Q Consensus        26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~-----~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs  100 (262)
                      .+.+++++|.  ++++++++++|+.+|++.|.++     ++.++||+|++                      ++++|+|+
T Consensus       153 ~~~~v~~iM~--~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~----------------------~~lvGiVt  208 (473)
T 2zy9_A          153 EEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK----------------------GRLKGVLS  208 (473)
T ss_dssp             CTTBSTTTCB--SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT----------------------SBEEEEEE
T ss_pred             CCCCHHHhCC--CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC----------------------CcEEEEEE
Confidence            5678999995  4799999999999999999986     68999999864                      68999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccc
Q 046022          101 MLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENI  179 (262)
Q Consensus       101 ~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~  179 (262)
                      ..|++..-                   ...+++++|..   +  +.++.+++++.+|++.|. ++.+++||+ |+.    
T Consensus       209 ~~Dll~~~-------------------~~~~v~dim~~---~--~~~v~~~~~l~ea~~~m~~~~~~~lpVV-De~----  259 (473)
T 2zy9_A          209 LRDLIVAD-------------------PRTRVAEIMNP---K--VVYVRTDTDQEEVARLMADYDFTVLPVV-DEE----  259 (473)
T ss_dssp             HHHHHHSC-------------------TTSBGGGTSBS---S--CCCEESSSBHHHHHHHHHHHTCSEEEEE-CTT----
T ss_pred             HHHHhcCC-------------------CCCcHHHHhCC---C--CeEEeCCCcHHHHHHHHHhcCCcEEEEE-cCC----
Confidence            99987631                   12479999972   3  578999999999999998 699999996 422    


Q ss_pred             ccceecccCCeeeEecHHHHHHHHHhh
Q 046022          180 SGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       180 ~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                              |+.+|+||..||++.+...
T Consensus       260 --------g~lvGiIT~~Dil~~i~~e  278 (473)
T 2zy9_A          260 --------GRLVGIVTVDDVLDVLEAE  278 (473)
T ss_dssp             --------SBEEEEEEHHHHHHHHHHH
T ss_pred             --------CEEEEEEehHhhHHHHHHH
Confidence                    2346999999999998764

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.30  E-value=3.4e-12  Score=101.18  Aligned_cols=113  Identities=20%  Similarity=0.311  Sum_probs=85.2

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc-
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA-  207 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~-  207 (262)
                      .+|+++|.. ..+  +.++.+++++.+|+++|. ++++++||+ +++            ++.+|+||..||++++.... 
T Consensus         5 ~~v~~im~~-~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vv-d~~------------~~~~G~vt~~dl~~~~~~~~~   68 (152)
T 4gqw_A            5 YTVGEFMTK-KED--LHVVKPTTTVDEALELLVENRITGFPVI-DED------------WKLVGLVSDYDLLALDSGDST   68 (152)
T ss_dssp             SBGGGTSEE-STT--CCCBCTTSBHHHHHHHHHHTTCSEEEEE-CTT------------CBEEEEEEHHHHTTCC----C
T ss_pred             EEhhhccCC-CCC--CeEECCCCcHHHHHHHHHHcCCceEEEE-eCC------------CeEEEEEEHHHHHHhhcccCc
Confidence            478999973 123  578999999999999998 789999996 432            23459999999987644221 


Q ss_pred             --------ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          208 --------SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       208 --------~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                              ..+......+++++  |.++++++.+++++.+|+++|.+++++.+||||++|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~v~~~--m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~  127 (152)
T 4gqw_A           69 WKTFNAVQKLLSKTNGKLVGDL--MTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGK  127 (152)
T ss_dssp             CHHHHHHHTC-----CCBHHHH--SEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSB
T ss_pred             ccchHHHHHHHHHhccccHHHh--cCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCc
Confidence                    11122234567774  8888999999999999999999999999999998774

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.29  E-value=1.3e-11  Score=96.24  Aligned_cols=105  Identities=17%  Similarity=0.301  Sum_probs=87.1

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      .+|+++|..   .  +.++.+++++.+|++.|. ++.+++||.. ++  +           .+|+||..|+++++.....
T Consensus         4 ~~v~~im~~---~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~--~-----------~~Givt~~dl~~~~~~~~~   64 (133)
T 2ef7_A            4 EIVKEYMKT---Q--VISVTKDAKLNDIAKVMTEKNIGSVIVVD-GN--K-----------PVGIITERDIVKAIGKGKS   64 (133)
T ss_dssp             CBGGGTSBC---S--CCEEETTCBHHHHHHHHHHHTCSEEEEEE-TT--E-----------EEEEEEHHHHHHHHHTTCC
T ss_pred             ccHHHhccC---C--CEEECCCCcHHHHHHHHHhcCCCEEEEEE-CC--E-----------EEEEEcHHHHHHHHhcCCC
Confidence            478999973   2  578999999999999998 6999999963 21  2           3599999999998876422


Q ss_pred             cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          209 ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       209 ~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                           ...++++  +|++++.++++++++.+|++.|.+++++.+||+|++|.
T Consensus        65 -----~~~~v~~--~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~  109 (133)
T 2ef7_A           65 -----LETKAEE--FMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGN  109 (133)
T ss_dssp             -----TTCBGGG--TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred             -----cccCHHH--HcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCe
Confidence                 2456777  48889999999999999999999999999999998774

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.29  E-value=2.9e-12  Score=103.55  Aligned_cols=107  Identities=18%  Similarity=0.213  Sum_probs=86.7

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..+|+++|.. ..+  +.++.+++++.+|+++|. ++++++||+ +++.           ++.+|+||..|+++++... 
T Consensus        37 ~~~v~diM~~-~~~--~~~v~~~~~i~~a~~~m~~~~~~~~pVv-d~~~-----------~~lvGivt~~dl~~~~~~~-  100 (156)
T 3oi8_A           37 DLEVRDAMIT-RSR--MNVLKENDSIERITAYVIDTAHSRFPVI-GEDK-----------DEVLGILHAKDLLKYMFNP-  100 (156)
T ss_dssp             TCBGGGTCEE-GGG--CCCEETTCCHHHHHHHHHHHCCSEEEEE-SSST-----------TCEEEEEEGGGGGGGSSCG-
T ss_pred             CCCHhheeee-HHH--eEEECCCCCHHHHHHHHHHCCCCEEEEE-cCCC-----------CcEEEEEEHHHHHHHHHcC-
Confidence            5689999973 112  578999999999999998 799999996 4321           2346999999999876442 


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                            ...+++++  |+ +++++++++++.+|+++|.++++..+||||++|.
T Consensus       101 ------~~~~v~~i--m~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~  144 (156)
T 3oi8_A          101 ------EQFHLKSI--LR-PAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGG  144 (156)
T ss_dssp             ------GGCCHHHH--CB-CCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSS
T ss_pred             ------CcccHHHH--cC-CCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCC
Confidence                  34577774  75 4899999999999999999999999999998875

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.29  E-value=7.5e-12  Score=101.19  Aligned_cols=106  Identities=20%  Similarity=0.289  Sum_probs=87.1

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..+|+++|..      .+++.+++++.+|++.|. ++++++||+ +++            ++.+|+||..||++++....
T Consensus        16 ~~~v~~im~~------~~~v~~~~~~~~a~~~m~~~~~~~~~Vv-d~~------------~~~~Givt~~dl~~~~~~~~   76 (159)
T 3fv6_A           16 KLQVKDFQSI------PVVIHENVSVYDAICTMFLEDVGTLFVV-DRD------------AVLVGVLSRKDLLRASIGQQ   76 (159)
T ss_dssp             TCBGGGSCBC------CCEEETTSBHHHHHHHHHHHTCSEEEEE-CTT------------SCEEEEEEHHHHHHHHTSCS
T ss_pred             hCCHHHHcCC------CEEECCCCcHHHHHHHHHHCCCCEEEEE-cCC------------CcEEEEEeHHHHHHHhhccC
Confidence            4589999972      248999999999999998 799999996 422            23469999999999875432


Q ss_pred             ccchhhhccccchhcccCc--CeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          208 SELKDITSHSIRELGALNE--NVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~--~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                          .....++++  +|++  +++++++++++.+|+++|.+++++.+||||++|
T Consensus        77 ----~~~~~~v~~--~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g  124 (159)
T 3fv6_A           77 ----ELTSVPVHI--IMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTD  124 (159)
T ss_dssp             ----CTTTCBGGG--TSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECS
T ss_pred             ----cccCcCHHH--HHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCC
Confidence                123467887  4887  899999999999999999999999999999876

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.29  E-value=1.2e-11  Score=100.58  Aligned_cols=111  Identities=18%  Similarity=0.302  Sum_probs=90.1

Q ss_pred             hccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022          128 MSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       128 ~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                      ...+|+++|....++  +.++.+++++.+|+++|. ++++++||+ +++            ++.+|+||..||++++...
T Consensus        22 ~~~~v~dim~~~~~~--~~~v~~~~~l~~a~~~~~~~~~~~~~Vv-d~~------------~~~~Givt~~dl~~~~~~~   86 (165)
T 3fhm_A           22 MATFVKDLLDRKGRD--VVTVGPDVSIGEAAGTLHAHKIGAVVVT-DAD------------GVVLGIFTERDLVKAVAGQ   86 (165)
T ss_dssp             SSCBHHHHHHHHCSC--CCEECTTSBHHHHHHHHHHHTCSEEEEE-CTT------------SCEEEEEEHHHHHHHHHHH
T ss_pred             hhcCHHHHhccCCCC--CeEECCCCCHHHHHHHHHHcCCCEEEEE-cCC------------CeEEEEEEHHHHHHHHHhc
Confidence            356899999731023  578999999999999998 799999996 422            2446999999999998875


Q ss_pred             cccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          207 ASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       207 ~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                      ..   .....++++  +|.++++++++++++.+|+++|.+++++.+||||+ |
T Consensus        87 ~~---~~~~~~v~~--~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g  133 (165)
T 3fhm_A           87 GA---ASLQQSVSV--AMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-G  133 (165)
T ss_dssp             GG---GGGTSBGGG--TSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-T
T ss_pred             CC---ccccCCHHH--HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-C
Confidence            31   123567887  48889999999999999999999999999999998 6

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.28  E-value=2.2e-11  Score=100.82  Aligned_cols=110  Identities=15%  Similarity=0.273  Sum_probs=89.1

Q ss_pred             hccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022          128 MSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       128 ~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                      +..+|+++|..   .  +.++.+++++.+|+++|. ++++++||+ +++            ++.+|+||..||++++...
T Consensus         7 ~~~~v~~im~~---~--~~~v~~~~~l~ea~~~~~~~~~~~~pVv-d~~------------g~~vGivt~~dl~~~~~~~   68 (184)
T 1pvm_A            7 MFMRVEKIMNS---N--FKTVNWNTTVFDAVKIMNENHLYGLVVK-DDN------------GNDVGLLSERSIIKRFIPR   68 (184)
T ss_dssp             CCCBGGGTSBT---T--CCEEETTCBHHHHHHHHHHHTCCEEEEE-CTT------------SCEEEEEEHHHHHHHTGGG
T ss_pred             cccCHHHhcCC---C--CeEECCCCcHHHHHHHHHHcCCCEEEEE-cCC------------CcEEEEEeHHHHHHHHhhc
Confidence            44689999972   3  678999999999999998 799999996 322            2346999999999987643


Q ss_pred             cccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          207 ASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       207 ~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      ...   ....++++  +|.++++++.+++++.+|+++|.+++++.+||||++|.
T Consensus        69 ~~~---~~~~~v~~--im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~  117 (184)
T 1pvm_A           69 NKK---PDEVPIRL--VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGR  117 (184)
T ss_dssp             CCC---GGGSBGGG--TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCC
T ss_pred             ccC---cccCCHHH--HhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCe
Confidence            111   12456777  48889999999999999999999999999999998764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.28  E-value=3.9e-12  Score=99.34  Aligned_cols=105  Identities=19%  Similarity=0.245  Sum_probs=83.6

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      .+|+++|.. ..+  +.++.+++++.+|+++|. ++++++||+ +++.           ++.+|+||..|+++++..   
T Consensus         5 ~~v~diM~~-~~~--~~~v~~~~~~~~a~~~m~~~~~~~~pVv-d~~~-----------~~~~Givt~~dl~~~~~~---   66 (129)
T 3jtf_A            5 RTVADIMVP-RSR--MDLLDISQPLPQLLATIIETAHSRFPVY-EDDR-----------DNIIGILLAKDLLRYMLE---   66 (129)
T ss_dssp             CBHHHHCEE-GGG--CCCEETTSCHHHHHHHHHHSCCSEEEEE-SSST-----------TCEEEEEEGGGGGGGGTC---
T ss_pred             CCHHHhCcc-HHH--eEEECCCCCHHHHHHHHHHcCCCEEEEE-cCCC-----------CcEEEEEEHHHHHhHhcc---
Confidence            479999973 123  578999999999999998 789999996 4321           234699999999987642   


Q ss_pred             cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          209 ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       209 ~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                           ...+++++  |. +++++.+++++.+|+++|.++++..+||+|++|.
T Consensus        67 -----~~~~v~~~--m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~  110 (129)
T 3jtf_A           67 -----PALDIRSL--VR-PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGG  110 (129)
T ss_dssp             -----TTSCGGGG--CB-CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CC
T ss_pred             -----CCcCHHHH--hC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCC
Confidence                 13567774  64 5889999999999999999999999999998774

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.27  E-value=7.6e-12  Score=100.56  Aligned_cols=109  Identities=20%  Similarity=0.359  Sum_probs=87.7

Q ss_pred             ccccccccccCC---CCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHH
Q 046022          129 SAPVSSIIGHCP---EGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMM  204 (262)
Q Consensus       129 ~~~V~~im~~~~---~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~  204 (262)
                      ..+|+++|...+   ++  +.++.+++++.+|+++|. ++++++||. ++             ++.+|+||..||++++.
T Consensus         6 ~~~v~dim~~~~~~~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~V~-~~-------------~~~~Givt~~dl~~~~~   69 (157)
T 4fry_A            6 STTVAQILKAKPDSGRT--IYTVTKNDFVYDAIKLMAEKGIGALLVV-DG-------------DDIAGIVTERDYARKVV   69 (157)
T ss_dssp             -CBHHHHHHHSTTTTCC--CCEEETTSBHHHHHHHHHHHTCSEEEEE-SS-------------SSEEEEEEHHHHHHHSG
T ss_pred             HHHHHHHHhcccccCCC--CeEECCCCcHHHHHHHHHHcCCCEEEEe-eC-------------CEEEEEEEHHHHHHHHH
Confidence            357999997432   33  688999999999999998 689999993 42             23459999999999886


Q ss_pred             hhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          205 NHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       205 ~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                      .....   ....+++++  |+++++++++++++.+|+++|.+++++.+||+| +|
T Consensus        70 ~~~~~---~~~~~v~~~--m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g  118 (157)
T 4fry_A           70 LQERS---SKATRVEEI--MTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GG  118 (157)
T ss_dssp             GGTCC---SSSCBHHHH--SBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TT
T ss_pred             hccCC---ccccCHHHH--cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CC
Confidence            64321   235678874  888999999999999999999999999999999 45

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.26  E-value=1.8e-11  Score=94.15  Aligned_cols=103  Identities=12%  Similarity=0.208  Sum_probs=85.1

Q ss_pred             ccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc
Q 046022          131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE  209 (262)
Q Consensus       131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~  209 (262)
                      +|+++|..   +  +.++.+++++.+|++.|. ++.+++||+. +  +           +.+|+||..|+++++..... 
T Consensus         2 ~v~~~m~~---~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~--~-----------~~~G~it~~dl~~~~~~~~~-   61 (125)
T 1pbj_A            2 RVEDVMVT---D--VDTIDITASLEDVLRNYVENAKGSSVVVK-E--G-----------VRVGIVTTWDVLEAIAEGDD-   61 (125)
T ss_dssp             CHHHHCBC---S--CCEEETTCBHHHHHHHHHHHCCCEEEEEE-T--T-----------EEEEEEEHHHHHHHHHHTCC-
T ss_pred             CHHHhcCC---C--ceEECCCCcHHHHHHHHHHcCCCEEEEEe-C--C-----------eeEEEEeHHHHHHHHhcCCc-
Confidence            57888872   3  578999999999999998 6999999963 2  1           23599999999998876432 


Q ss_pred             chhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          210 LKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       210 l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                         ....+++++  |++++.++++++++.+|+++|.+++++.+||+|+ |
T Consensus        62 ---~~~~~v~~~--m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~  105 (125)
T 1pbj_A           62 ---LAEVKVWEV--MERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-D  105 (125)
T ss_dssp             ---TTTSBHHHH--CBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-T
T ss_pred             ---ccccCHHHH--cCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-C
Confidence               124577774  8889999999999999999999999999999998 5

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.25  E-value=4.1e-12  Score=98.88  Aligned_cols=106  Identities=20%  Similarity=0.181  Sum_probs=86.3

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..+|+++|..   +  +.++.+++++.+|++.|. ++.+++||+.+   +++           +|+||..||++++.+..
T Consensus         4 s~~v~~~m~~---~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~-----------~Givt~~dl~~~~~~~~   64 (128)
T 3gby_A            4 SVTFSYLAET---D--YPVFTLGGSTADAARRLAASGCACAPVLDG---ERY-----------LGMVHLSRLLEGRKGWP   64 (128)
T ss_dssp             TCBGGGGCBC---C--SCCEETTSBHHHHHHHHHHHTCSEEEEEET---TEE-----------EEEEEHHHHHTTCSSSC
T ss_pred             ceEHHHhhcC---C--cceECCCCCHHHHHHHHHHCCCcEEEEEEC---CEE-----------EEEEEHHHHHHHHhhCC
Confidence            3579999973   3  577999999999999998 68999999633   233           59999999998765432


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      .     ...++++  +|++++.++++++++.+|+++|.++++..+||||++|.
T Consensus        65 ~-----~~~~v~~--~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~  110 (128)
T 3gby_A           65 T-----VKEKLGE--ELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGR  110 (128)
T ss_dssp             C-----TTCBCCG--GGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCB
T ss_pred             c-----ccCcHHH--HccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCC
Confidence            1     1245776  48889999999999999999999999999999998774

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.25  E-value=2.1e-11  Score=100.79  Aligned_cols=106  Identities=9%  Similarity=0.055  Sum_probs=85.4

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..+|+++|.. ..+  ++++.+++++.+|+++|. ++++++||+ ++..           ++.+|+||..||++++....
T Consensus        35 ~~~v~diM~~-~~~--v~~v~~~~tv~ea~~~m~~~~~~~~pVv-d~~~-----------~~lvGivt~~Dl~~~~~~~~   99 (173)
T 3ocm_A           35 ERSIRSIMTP-RTD--VSWVNIDDDAATIRQQLTAAPHSFFPVC-RGSL-----------DEVVGIGRAKDLVADLITEG   99 (173)
T ss_dssp             TSCSTTTSEE-GGG--CCCEETTSCHHHHHHHHHHSSCSEEEEE-SSST-----------TSEEEEEEHHHHHHHHHHHS
T ss_pred             CCCHHHhCCc-HHH--eEEEeCCCCHHHHHHHHHhCCCCEEEEE-eCCC-----------CCEEEEEEHHHHHHHHhcCC
Confidence            4589999972 123  678999999999999998 799999996 3321           23469999999999886541


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                             ..+++    +.++++++++++++.+|+++|.++++..+||||++|.
T Consensus       100 -------~~~v~----~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~  141 (173)
T 3ocm_A          100 -------RVRRN----RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGA  141 (173)
T ss_dssp             -------SCCGG----GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCC
T ss_pred             -------cchhH----hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCC
Confidence                   23444    4478899999999999999999999999999998874

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.25  E-value=2.5e-11  Score=97.80  Aligned_cols=109  Identities=19%  Similarity=0.289  Sum_probs=86.2

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCe-eEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh-
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHR-ALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH-  206 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~r-v~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~-  206 (262)
                      .+|+++|..   .  +.++.+++++.+|+++|. +++++ +||+.+ +  ++           +|+||..||++++... 
T Consensus        16 ~~v~~im~~---~--~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-~--~~-----------vGivt~~dl~~~~~~~~   76 (157)
T 1o50_A           16 KDVCKLISL---K--PTVVEEDTPIEEIVDRILEDPVTRTVYVARD-N--KL-----------VGMIPVMHLLKVSGFHF   76 (157)
T ss_dssp             HHHTTSSCC---C--CEEECTTCBHHHHHHHHHHSTTCCEEEEEET-T--EE-----------EEEEEHHHHHHHHHHHH
T ss_pred             ccHhhcccC---C--CceECCCCCHHHHHHHHHhCCCCccEEEEEC-C--EE-----------EEEEEHHHHHHHHhhhH
Confidence            478999972   3  688999999999999998 78999 999633 2  33           5999999999987532 


Q ss_pred             ---c---cc----chhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          207 ---A---SE----LKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       207 ---~---~~----l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                         .   ..    .......+++++  |++ ++++++++++.+|+++|.+++++.+||||++|.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~v~~i--m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~  137 (157)
T 1o50_A           77 FGFIPKEELIRSSMKRLIAKNASEI--MLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGE  137 (157)
T ss_dssp             HCCCC-------CCCCCSSCBHHHH--CBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred             HhhhccHHHHHHHHHHHcCCcHHHH--cCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCE
Confidence               0   00    112234567774  888 999999999999999999999999999997764

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.24  E-value=1.8e-11  Score=98.46  Aligned_cols=112  Identities=11%  Similarity=0.202  Sum_probs=82.9

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..+|+++|..   +  +.++.+++++.+|+++|. ++++++||+.+++.           ++.+|+||..||++++....
T Consensus        12 ~~~v~dim~~---~--~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~-----------~~~~Givt~~dl~~~~~~~~   75 (164)
T 2pfi_A           12 HVRVEHFMNH---S--ITTLAKDTPLEEVVKVVTSTDVTEYPLVESTES-----------QILVGIVQRAQLVQALQAEP   75 (164)
T ss_dssp             SCBHHHHCBC---C--CCCEETTCBHHHHHHHHHTCCCSEEEEESCTTT-----------CBEEEEEEHHHHHHHHHC--
T ss_pred             CCCHHHHcCC---C--CeEECCCCcHHHHHHHHHhCCCCceeEEecCCC-----------CEEEEEEEHHHHHHHHHhhc
Confidence            3579999973   3  577999999999999998 68999999632111           23469999999999886542


Q ss_pred             ccchhhhccccchhcccCcC------eEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          208 SELKDITSHSIRELGALNEN------VFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~------v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                      ....+....++.++  |.++      ++++.+++++.+|+++|.+++++.+||+| +|
T Consensus        76 ~~~~~~~~~~v~~~--m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g  130 (164)
T 2pfi_A           76 PSRAPGHQQCLQDI--LARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RG  130 (164)
T ss_dssp             -----CCCCBHHHH--HHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TT
T ss_pred             cccCCcccchhhhh--hcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CC
Confidence            21111123445553  5444      79999999999999999999999999999 55

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.23  E-value=3e-11  Score=96.79  Aligned_cols=112  Identities=12%  Similarity=0.206  Sum_probs=87.4

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..+|+++|.. .+.  +.++.+++++.+|++.|. ++++++||+ +++            ++.+|+||..||++++....
T Consensus        10 ~~~v~~im~~-~~~--~~~v~~~~~~~~a~~~m~~~~~~~~pVv-d~~------------~~~~Givt~~dl~~~~~~~~   73 (157)
T 2emq_A           10 QMTVKPFLIP-ADK--VAHVQPGNYLDHALLVLTKTGYSAIPVL-DTS------------YKLHGLISMTMMMDAILGLE   73 (157)
T ss_dssp             CCBSTTTCEE-GGG--SCCBCTTSBHHHHHHHHHHSSSSEEEEE-CTT------------CCEEEEEEHHHHHHHSBCSS
T ss_pred             hCcHHhhccC-Ccc--ceEECCCCcHHHHHHHHHHCCceEEEEE-cCC------------CCEEEEeeHHHHHHHHhccc
Confidence            5689999972 112  578999999999999998 789999996 322            23469999999999875421


Q ss_pred             c-cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          208 S-ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       208 ~-~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      . ........++++  +|+++++++++++++.+|+++|.++++  +||||++|.
T Consensus        74 ~~~~~~~~~~~v~~--~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~  123 (157)
T 2emq_A           74 RIEFERLETMKVEE--VMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGY  123 (157)
T ss_dssp             SBCGGGGGTCBGGG--TCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSS
T ss_pred             ccchHHhcCCcHHH--HhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCe
Confidence            1 012234567777  488899999999999999999999988  999998764

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.22  E-value=2.9e-11  Score=94.63  Aligned_cols=107  Identities=17%  Similarity=0.324  Sum_probs=86.0

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHH-HHHHHhh
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDL-LRFMMNH  206 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDI-ir~L~~~  206 (262)
                      ..+|+++|..   .  +.++.+++++.+|+++|. ++.+++||+ +++            ++.+|+||..|+ ++++...
T Consensus         7 ~~~v~~im~~---~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vv-d~~------------~~~~Givt~~dl~~~~~~~~   68 (138)
T 2p9m_A            7 NIKVKDVMTK---N--VITAKRHEGVVEAFEKMLKYKISSLPVI-DDE------------NKVIGIVTTTDIGYNLIRDK   68 (138)
T ss_dssp             TCBGGGTSBC---S--CCCEETTSBHHHHHHHHHHHTCCEEEEE-CTT------------CBEEEEEEHHHHHHHHTTTC
T ss_pred             cCCHHHhhcC---C--ceEECCCCcHHHHHHHHHHCCCcEEEEE-CCC------------CeEEEEEEHHHHHHHHHhhc
Confidence            3579999972   2  577999999999999998 789999996 322            234699999999 8877542


Q ss_pred             cccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCC-----CcEEEEEcCCCC
Q 046022          207 ASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAAL-----LHAVPIVKSSGA  260 (262)
Q Consensus       207 ~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~-----isav~VVd~~g~  260 (262)
                      .     ....+++++  |++++.++++++++.+|+++|.+++     ++.+||+|++|.
T Consensus        69 ~-----~~~~~v~~~--m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~  120 (138)
T 2p9m_A           69 Y-----TLETTIGDV--MTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNK  120 (138)
T ss_dssp             C-----CSSCBHHHH--SCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSB
T ss_pred             c-----cCCcCHHHH--hCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCe
Confidence            1     124567774  8889999999999999999999999     999999997763

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.22  E-value=8.7e-12  Score=101.88  Aligned_cols=113  Identities=19%  Similarity=0.307  Sum_probs=85.3

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc-
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA-  207 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~-  207 (262)
                      .+|+++|.. ..+  +.++.+++++.+|+++|. ++++++||+ +++            ++.+|+||..||++++.... 
T Consensus         4 ~~v~dim~~-~~~--~~~v~~~~~l~~a~~~m~~~~~~~~pVv-d~~------------~~~~Givt~~dl~~~~~~~~~   67 (180)
T 3sl7_A            4 YTVGDFMTP-RQN--LHVVKPSTSVDDALELLVEKKVTGLPVI-DDN------------WTLVGVVSDYDLLALDSISGR   67 (180)
T ss_dssp             CBHHHHSEE-GGG--CCCBCTTSBHHHHHHHHHHHTCSEEEEE-CTT------------CBEEEEEEHHHHTCC------
T ss_pred             eeHHHhcCC-CCC--ceeeCCCCcHHHHHHHHHHcCCCeEEEE-CCC------------CeEEEEEEHHHHHhhhhhccc
Confidence            368899973 112  578999999999999998 689999996 422            23469999999986432110 


Q ss_pred             ----------------------ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          208 ----------------------SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       208 ----------------------~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                                            ..+......+++++  |+++++++++++++.+|+++|.+++++.+||||++|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~  140 (180)
T 3sl7_A           68 SQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDL--MTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGK  140 (180)
T ss_dssp             -------------CCCSHHHHHHHHHTTTTCBHHHH--SEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCB
T ss_pred             cCCcccccccccchhhhhHHHHHHHhccccccHHHH--hCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCe
Confidence                                  00012235567774  8888999999999999999999999999999998774

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.22  E-value=1.7e-10  Score=110.16  Aligned_cols=118  Identities=14%  Similarity=0.205  Sum_probs=96.6

Q ss_pred             eeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEec--CCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022           29 KVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAA--PPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA  106 (262)
Q Consensus        29 ~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd--~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~  106 (262)
                      +++|+|.  ++++++++++|+.+|++.|.++++.++||++  .+                      ++++|+|+..|++.
T Consensus        91 ~~~~im~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~----------------------~~lvGivt~~Dl~~  146 (491)
T 1zfj_A           91 RSENGVI--IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLAN----------------------RKLVGIITNRDMRF  146 (491)
T ss_dssp             HHTTTTS--SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT----------------------CBEEEEEEHHHHHH
T ss_pred             hHHhcCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCC----------------------CEEEEEEEHHHHhh
Confidence            4689995  4778999999999999999999999999998  43                      68999999999875


Q ss_pred             HHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceec
Q 046022          107 HIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELV  185 (262)
Q Consensus       107 ~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~  185 (262)
                      .  .+                ...+++++|..  ++  +.++.+++++.+++++|. ++++++||+ +..          
T Consensus       147 ~--~~----------------~~~~v~~im~~--~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVV-d~~----------  193 (491)
T 1zfj_A          147 I--SD----------------YNAPISEHMTS--EH--LVTAAVGTDLETAERILHEHRIEKLPLV-DNS----------  193 (491)
T ss_dssp             C--SC----------------SSSBTTTSCCC--SC--CCCEETTCCHHHHHHHHHHTTCSEEEEE-CTT----------
T ss_pred             h--cc----------------CCCcHHHHcCC--CC--CEEECCCCCHHHHHHHHHHcCCCEEEEE-cCC----------
Confidence            3  11                13479999972  12  578999999999999998 799999996 422          


Q ss_pred             ccCCeeeEecHHHHHHHHHh
Q 046022          186 ESASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       186 ~~~~~~giITqsDIir~L~~  205 (262)
                        ++.+|+||++||++.+..
T Consensus       194 --g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          194 --GRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             --SBEEEEEEHHHHHHHHHC
T ss_pred             --CcEEEEEEHHHHHHHHhc
Confidence              234599999999999874

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.21  E-value=6.8e-11  Score=92.63  Aligned_cols=107  Identities=13%  Similarity=0.266  Sum_probs=85.1

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..+|+++|..   +  +.++.+++++.+|++.|. ++++++||+ +++            ++.+|+||..|+++.+....
T Consensus         6 ~~~v~~im~~---~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vv-d~~------------~~~~Givt~~dl~~~~~~~~   67 (138)
T 2yzi_A            6 KAPIKVYMTK---K--LLGVKPSTSVQEASRLMMEFDVGSLVVI-NDD------------GNVVGFFTKSDIIRRVIVPG   67 (138)
T ss_dssp             TSBGGGTCBC---C--CCEECTTSBHHHHHHHHHHHTCSEEEEE-CTT------------SCEEEEEEHHHHHHHTTTTC
T ss_pred             hhhHHHHhcC---C--CeEECCCCcHHHHHHHHHHcCCCEEEEE-cCC------------CcEEEEEeHHHHHHHHHhcC
Confidence            3579999972   3  578999999999999998 689999996 322            23469999999985433321


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      .    ....++++  +|++++.++++++++.+|+++|.+++++.+ |||++|.
T Consensus        68 ~----~~~~~v~~--~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~  113 (138)
T 2yzi_A           68 L----PYDIPVER--IMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGK  113 (138)
T ss_dssp             C----CTTSBGGG--TCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTE
T ss_pred             C----cccCCHHH--HhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCC
Confidence            1    23457777  488899999999999999999999999999 9997763

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.21  E-value=4.5e-11  Score=93.95  Aligned_cols=111  Identities=17%  Similarity=0.280  Sum_probs=84.4

Q ss_pred             hhcccccc---ccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHH
Q 046022          127 KMSAPVSS---IIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRF  202 (262)
Q Consensus       127 ~~~~~V~~---im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~  202 (262)
                      .+..++++   +|.   .+  +.++.+++++.+|++.|. ++.+++||+ +++            ++.+|+||..|++++
T Consensus         5 ~~~~~v~~~~~~~~---~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vv-d~~------------~~~~Givt~~dl~~~   66 (144)
T 2nyc_A            5 FLKIPIGDLNIITQ---DN--MKSCQMTTPVIDVIQMLTQGRVSSVPII-DEN------------GYLINVYEAYDVLGL   66 (144)
T ss_dssp             GGGSBGGGSSCCBC---SS--CCCBCTTSBHHHHHHHHHHHTCSEEEEE-CTT------------CBEEEEEEHHHHHHH
T ss_pred             hhhcchhhcCCCCC---CC--ceEECCCCcHHHHHHHHHHcCcceeeEE-cCC------------CcEEEEEcHHHHHHH
Confidence            45668888   664   13  578999999999999998 699999996 322            234599999999998


Q ss_pred             HHhhcccchhhhccccchhcccCc------CeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          203 MMNHASELKDITSHSIRELGALNE------NVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       203 L~~~~~~l~~l~~~ti~eL~~~~~------~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      +....   ......+++++  |.+      ++.++++++++.+|+++|.+++++.+||+|++|.
T Consensus        67 ~~~~~---~~~~~~~v~~~--m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~  125 (144)
T 2nyc_A           67 IKGGI---YNDLSLSVGEA--LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGR  125 (144)
T ss_dssp             HHTC-------CCSBHHHH--HHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSB
T ss_pred             hcccc---cccCCccHHHH--HhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCC
Confidence            86532   11124566763  554      6899999999999999999999999999998764

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.21  E-value=3.2e-11  Score=94.35  Aligned_cols=108  Identities=15%  Similarity=0.264  Sum_probs=85.0

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      .+|+++|.....+  +.++.+++++.+|++.|. ++.+++||+ ++             ++.+|+||..||++++..+..
T Consensus         6 ~~v~~im~~~~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vv-d~-------------~~~~Givt~~dl~~~~~~~~~   69 (135)
T 2rc3_A            6 KTVKHLLQEKGHT--VVAIGPDDSVFNAMQKMAADNIGALLVM-KD-------------EKLVGILTERDFSRKSYLLDK   69 (135)
T ss_dssp             CBHHHHHHHHCCC--CCEECTTSBHHHHHHHHHHHTCSEEEEE-ET-------------TEEEEEEEHHHHHHHGGGSSS
T ss_pred             eeHHHHHhcCCCC--cEEECCCCcHHHHHHHHHhcCCCEEEEE-EC-------------CEEEEEEehHHHHHHHHHcCC
Confidence            3688999611013  578999999999999998 699999996 32             123599999999976544311


Q ss_pred             cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          209 ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       209 ~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                         .....++++  +|++++.++++++++.+|+++|.+++++.+||+| +|
T Consensus        70 ---~~~~~~v~~--~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g  114 (135)
T 2rc3_A           70 ---PVKDTQVKE--IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DG  114 (135)
T ss_dssp             ---CGGGSBGGG--TSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TT
T ss_pred             ---CcccCCHHH--hccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CC
Confidence               123567887  4888999999999999999999999999999999 55

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.19  E-value=2.1e-11  Score=95.04  Aligned_cols=104  Identities=12%  Similarity=0.232  Sum_probs=84.0

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHH-HHHhhc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLR-FMMNHA  207 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir-~L~~~~  207 (262)
                      .+|+++|..   +  +.++.+++++.+|+++|. ++.+++||+ +++            ++.+|+||..|+++ ++....
T Consensus         8 ~~v~~im~~---~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vv-d~~------------~~~~Givt~~dl~~~~~~~~~   69 (133)
T 1y5h_A            8 TTARDIMNA---G--VTCVGEHETLTAAAQYMREHDIGALPIC-GDD------------DRLHGMLTDRDIVIKGLAAGL   69 (133)
T ss_dssp             CCHHHHSEE---T--CCCEETTSBHHHHHHHHHHHTCSEEEEE-CGG------------GBEEEEEEHHHHHHTTGGGTC
T ss_pred             cCHHHHhcC---C--ceEeCCCCCHHHHHHHHHHhCCCeEEEE-CCC------------CeEEEEEeHHHHHHHHHhcCC
Confidence            478999973   2  577999999999999998 689999996 322            23469999999994 554322


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      .    ....+++++  |++++.++++++++.+|+++|.+++++.+||+|+
T Consensus        70 ~----~~~~~v~~~--m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  113 (133)
T 1y5h_A           70 D----PNTATAGEL--ARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE  113 (133)
T ss_dssp             C----TTTSBHHHH--HTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET
T ss_pred             C----ccccCHHHH--hcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            1    124577774  8889999999999999999999999999999997

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.18  E-value=1.3e-10  Score=82.50  Aligned_cols=65  Identities=18%  Similarity=0.273  Sum_probs=54.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +++++++++|+.+|+++|.+++++++||++.                       ++++||||.+||++.+.....     
T Consensus         1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~-----------------------~~lvGIvT~~Di~~~~~~~~~-----   52 (70)
T 3ghd_A            1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG-----------------------DEILGVVTERDILDKVVAKGK-----   52 (70)
T ss_dssp             CEEEECTTCBHHHHHHHHHHTTCSEEEEEET-----------------------TEEEEEEEHHHHHHHTTTTTC-----
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC-----------------------CEEEEEEEHHHHHHHHHhcCC-----
Confidence            3689999999999999999999999999984                       589999999999988765211     


Q ss_pred             CCcchHHhhhcccccccccc
Q 046022          119 DAPDDLDKKMSAPVSSIIGH  138 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~  138 (262)
                             .....+|+++|+.
T Consensus        53 -------~~~~~~V~~iMt~   65 (70)
T 3ghd_A           53 -------NPKEVKVEEIMTK   65 (70)
T ss_dssp             -------CGGGCBGGGTCEE
T ss_pred             -------CcccCCHHHhcCC
Confidence                   1235689999984

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.17  E-value=8.5e-11  Score=96.48  Aligned_cols=116  Identities=14%  Similarity=0.140  Sum_probs=86.8

Q ss_pred             ccccccccccCCCCCeeEEe--CCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHh
Q 046022          129 SAPVSSIIGHCPEGLSLWTL--SPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v--~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~  205 (262)
                      ..+|+++|....+.+ +.++  .+++++.+|+++|. ++++++||+.+++.           ++.+|+||..|+++++..
T Consensus        10 ~~~v~dim~~~~~~~-~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~-----------~~lvGiit~~dl~~~~~~   77 (185)
T 2j9l_A           10 KTLAMDVMKPRRNDP-LLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES-----------QRLVGFVLRRDLIISIEN   77 (185)
T ss_dssp             CCBHHHHSBSCTTSC-CCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT-----------CBEEEEEEHHHHHHHHHH
T ss_pred             cCcHHHHhcccccCc-eEEEecCCCccHHHHHHHHHhcCCCceeEEEECCC-----------CeEEEEEEHHHHHHHHHh
Confidence            458999997321111 3567  99999999999998 78999999621221           234699999999999876


Q ss_pred             hcccc--------------------hhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          206 HASEL--------------------KDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       206 ~~~~l--------------------~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                      .....                    ......++++  +|+++++++.+++++.+|+++|.+++++.+||+| +|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g  148 (185)
T 2j9l_A           78 ARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRN--ILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NG  148 (185)
T ss_dssp             HHTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGG--GEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TT
T ss_pred             hcccCCCccccceeecccCCcccccccccCccHHH--hhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CC
Confidence            41100                    0123456666  4888999999999999999999999999999998 54

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.16  E-value=4.9e-11  Score=96.10  Aligned_cols=113  Identities=8%  Similarity=0.140  Sum_probs=87.8

Q ss_pred             hccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022          128 MSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       128 ~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                      ...+|+++|.. .++  +.++.+++++.+|+++|. ++++++||+ +++            ++.+|+||..||++++...
T Consensus        12 ~~~~v~~im~~-~~~--~~~v~~~~~l~~a~~~m~~~~~~~~pVv-d~~------------~~lvGivt~~dl~~~~~~~   75 (159)
T 1yav_A           12 LEATVGQFMIE-ADK--VAHVQVGNNLEHALLVLTKTGYTAIPVL-DPS------------YRLHGLIGTNMIMNSIFGL   75 (159)
T ss_dssp             TTCBHHHHSEE-GGG--SCCEETTCBHHHHHHHHHHHCCSEEEEE-CTT------------CBEEEEEEHHHHHHHHBCS
T ss_pred             hHhhHHHHhCC-ccc--eEEECCCCcHHHHHHHHHhCCCcEEEEE-CCC------------CCEEEEeEHHHHHHHhhhh
Confidence            35689999972 112  578999999999999998 799999996 422            2346999999999988653


Q ss_pred             cc-cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          207 AS-ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       207 ~~-~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      .. ........+++++  |+++++++.+++++.+|+++|.++++  +||||++|.
T Consensus        76 ~~~~~~~~~~~~v~~~--m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~  126 (159)
T 1yav_A           76 ERIEFEKLDQITVEEV--MLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQV  126 (159)
T ss_dssp             SSBCGGGTTTSBHHHH--SBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCB
T ss_pred             cccchhhhccCCHHHh--cCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCe
Confidence            21 1122345678874  88899999999999999999999987  999998763

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.13  E-value=3.3e-11  Score=115.62  Aligned_cols=118  Identities=16%  Similarity=0.189  Sum_probs=82.6

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      .++.++|.  ++++++++++|+.+|++.|.+++++++||++.+                      ++++|+|+.+|+.. 
T Consensus        89 k~~~~~m~--~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~----------------------~~lvGiVt~rDL~~-  143 (496)
T 4fxs_A           89 KIFEAGVV--THPVTVRPEQTIADVMELTHYHGFAGFPVVTEN----------------------NELVGIITGRDVRF-  143 (496)
T ss_dssp             HHCCC--C--BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSS----------------------SBEEEEEEHHHHTT-
T ss_pred             cccccccc--cCceEECCCCCHHHHHHHHHHcCCcEEEEEccC----------------------CEEEEEEEHHHHhh-
Confidence            34678886  467899999999999999999999999999864                      68999999999751 


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                       ..                ....+|+++|.. .++  ++++.+++++.+++++|. ++++++||+ |+.           
T Consensus       144 -~~----------------~~~~~v~diM~p-~~~--~vtv~~~~~l~ea~~~m~~~~i~~lpVV-De~-----------  191 (496)
T 4fxs_A          144 -VT----------------DLTKSVAAVMTP-KER--LATVKEGATGAEVQEKMHKARVEKILVV-NDE-----------  191 (496)
T ss_dssp             -CC----------------CTTSBGGGTSEE-GGG--CCEEECC----CGGGTCC---CCCEEEE-CTT-----------
T ss_pred             -cc----------------cCCCcHHHHhcC-CCC--CEEECCCCCHHHHHHHHHHcCCCEEEEE-cCC-----------
Confidence             11                123579999971 112  578999999999999998 799999996 432           


Q ss_pred             cCCeeeEecHHHHHHHH
Q 046022          187 SASSYQMLTQMDLLRFM  203 (262)
Q Consensus       187 ~~~~~giITqsDIir~L  203 (262)
                       +...|+||..||++..
T Consensus       192 -G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          192 -FQLKGMITAKDFHKAE  207 (496)
T ss_dssp             -SBCCEEECCC-----C
T ss_pred             -CCEEEeehHhHHHHhh
Confidence             2335999999999865

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.13  E-value=2.2e-11  Score=116.43  Aligned_cols=120  Identities=15%  Similarity=0.250  Sum_probs=7.2

Q ss_pred             eeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHH
Q 046022           29 KVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHI  108 (262)
Q Consensus        29 ~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l  108 (262)
                      ++.|+|.  ++++++++++|+.+|++.|.++++.++||+|.+                      ++++|+||..|+... 
T Consensus        96 ~~~~iM~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~----------------------~~lvGivt~~Dl~~~-  150 (494)
T 1vrd_A           96 KTENGII--YDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE----------------------GRLVGLLTNRDVRFE-  150 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCc--cCCeEECCCCCHHHHHHHHHHcCceEEEEEcCC----------------------CEEEEEEEHHHHHhh-
Confidence            4788995  478899999999999999999999999999864                      589999999998752 


Q ss_pred             hCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceeccc
Q 046022          109 AGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVES  187 (262)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~  187 (262)
                       .                ....+|+++|.. .++  +.++.+++++.+++++|. ++++++||+ +++            
T Consensus       151 -~----------------~~~~~v~~im~~-~~~--~~~v~~~~~l~ea~~~m~~~~~~~lpVV-d~~------------  197 (494)
T 1vrd_A          151 -K----------------NLSKKIKDLMTP-REK--LIVAPPDISLEKAKEILHQHRIEKLPLV-SKD------------  197 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -c----------------CCCCcHHHHhCC-CCC--CeEECCCCCHHHHHHHHHHcCCcEEEEE-cCC------------
Confidence             1                023479999972 113  688999999999999998 699999996 322            


Q ss_pred             CCeeeEecHHHHHHHHHhh
Q 046022          188 ASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       188 ~~~~giITqsDIir~L~~~  206 (262)
                      ++.+|+||+.||++.+...
T Consensus       198 g~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          198 NKLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             -----------CHHHHTCT
T ss_pred             CeEEEEEEHHHHHhhhccc
Confidence            2345999999999987543

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.09  E-value=5e-11  Score=114.15  Aligned_cols=118  Identities=17%  Similarity=0.181  Sum_probs=3.5

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      .+++++|.  .+++++++++|+.+|+++|.+++++.+||+| +                      ++++|+|+..|+...
T Consensus        88 k~~~~~m~--~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~----------------------g~lvGIVt~rDl~~~  142 (490)
T 4avf_A           88 KKHETAIV--RDPVTVTPSTKIIELLQMAREYGFSGFPVVE-Q----------------------GELVGIVTGRDLRVK  142 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCcc--cCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C----------------------CEEEEEEEhHHhhhc
Confidence            35788986  4678999999999999999999999999998 4                      589999999997421


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                       .                 ....+|+++|+. .++  ++++.+++++.+|+++|. ++++++||+ |+.           
T Consensus       143 -~-----------------~~~~~V~~vMtp-~~~--~vtv~~~~~l~ea~~~m~~~~i~~lpVV-De~-----------  189 (490)
T 4avf_A          143 -P-----------------NAGDTVAAIMTP-KDK--LVTAREGTPLEEMKAKLYENRIEKMLVV-DEN-----------  189 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -c-----------------ccCCcHHHHhcc-CCC--CEEECCCCcHHHHHHHHHHcCCCEEEEE-cCC-----------
Confidence             1                 123589999971 113  688999999999999998 799999996 422           


Q ss_pred             cCCeeeEecHHHHHHHHH
Q 046022          187 SASSYQMLTQMDLLRFMM  204 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~  204 (262)
                       ++..|+||..||++...
T Consensus       190 -g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          190 -FYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             ------------------
T ss_pred             -CcEEEEEehHHhhhhcc
Confidence             23459999999999764

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.06  E-value=4.9e-10  Score=95.16  Aligned_cols=102  Identities=15%  Similarity=0.299  Sum_probs=84.3

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHhc----CCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHH
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSK----GIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMM  204 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~----g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~  204 (262)
                      ..+++++|+.   +  +.++.+++++.+|++.|.+    +++.+||+ ++.            ++.+|+||..|+++.  
T Consensus        53 ~~~v~~iM~~---~--~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vv-d~~------------~~lvGivt~~dll~~--  112 (205)
T 3kxr_A           53 ENEIGRYTDH---Q--MLVLSDKATVAQAQRFFRRIELDCNDNLFIV-DEA------------DKYLGTVRRYDIFKH--  112 (205)
T ss_dssp             TTCGGGGCBC---C--CCEEETTCBHHHHHHHHHHCCCTTCCEEEEE-CTT------------CBEEEEEEHHHHTTS--
T ss_pred             cchHHhhccC---c--eEEECCCCcHHHHHHHHHhhCccCeeEEEEE-cCC------------CeEEEEEEHHHHHhC--
Confidence            4579999972   3  6889999999999999984    78889985 422            234599999998752  


Q ss_pred             hhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          205 NHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       205 ~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                              ....++++  +|++++++|++++++.+|+++|.++++.++||||++|.
T Consensus       113 --------~~~~~v~~--im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~  158 (205)
T 3kxr_A          113 --------EPHEPLIS--LLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGE  158 (205)
T ss_dssp             --------CTTSBGGG--GCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSB
T ss_pred             --------CCcchHHH--HhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCe
Confidence                    12457887  49899999999999999999999999999999998874

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.02  E-value=3.5e-10  Score=96.29  Aligned_cols=101  Identities=13%  Similarity=0.203  Sum_probs=83.1

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      ..+.++|..   +  +.++.+++++.+|+++|. ++++++||+ +++            ++++|+||..|+.+++.    
T Consensus        13 ~~~~~~~~~---~--~~~v~~~~tv~ea~~~m~~~~~~~~pVv-d~~------------~~l~Givt~~dl~~~~~----   70 (213)
T 1vr9_A           13 MKVKKWVTQ---D--FPMVEESATVRECLHRMRQYQTNECIVK-DRE------------GHFRGVVNKEDLLDLDL----   70 (213)
T ss_dssp             CBGGGGCBS---C--SCEEETTCBHHHHHHHHHHTTSSEEEEE-CTT------------SBEEEEEEGGGGTTSCT----
T ss_pred             cCHHHhhcC---C--CeEECCCCcHHHHHHHHHHCCCCEEEEE-cCC------------CEEEEEEEHHHHHhhcC----
Confidence            357788862   3  578999999999999998 789999996 322            23459999999987542    


Q ss_pred             cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          209 ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       209 ~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                            ..+++++  |+++++++.+++++.+|+++|.+++++.+||+|++|.
T Consensus        71 ------~~~v~~i--m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~  114 (213)
T 1vr9_A           71 ------DSSVFNK--VSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMR  114 (213)
T ss_dssp             ------TSBSGGG--CBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCB
T ss_pred             ------CCcHHHH--ccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCE
Confidence                  3567874  8889999999999999999999999999999998763

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.02  E-value=6.4e-10  Score=97.67  Aligned_cols=62  Identities=6%  Similarity=0.096  Sum_probs=49.7

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                      ..+|+++|+.   +  ++++.+++++.+|+++|. ++++++||+.+++.           +.++|+||++||++++...
T Consensus        12 ~~~v~diMt~---~--vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~-----------~~LvGiIt~~dl~~~l~~~   74 (250)
T 2d4z_A           12 NIQVGDIMVR---D--VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDT-----------NTLLGSIDRTEVEGLLQRR   74 (250)
T ss_dssp             SCBTTSSSBS---S--CCCEETTCBHHHHHHHHHHCCCSEEEEESCTTT-----------CBEEEEEEHHHHHHHHHHH
T ss_pred             CCChHHhcCC---C--CeEECCCCCHHHHHHHHHhcCCCEEEEEecCCC-----------CeEEEEEEHHHHHHHHHHh
Confidence            4579999983   3  688999999999999998 79999999743221           2346999999999987654

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.95  E-value=1.2e-09  Score=97.38  Aligned_cols=102  Identities=19%  Similarity=0.244  Sum_probs=84.7

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-c-----CCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHH
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-K-----GIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRF  202 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~-----g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~  202 (262)
                      ..+|+++|..   +  ++++.+++++.+|++.|. +     +++++||+ +++            ++.+|+||..|++++
T Consensus       136 ~~~v~~iM~~---~--~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVv-d~~------------~~lvGivt~~dll~~  197 (286)
T 2oux_A          136 DETAGAIMTT---E--FVSIVANQTVRSAMYVLKNQADMAETIYYVYVV-DQE------------NHLVGVISLRDLIVN  197 (286)
T ss_dssp             TTBHHHHCBS---C--CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEE-CTT------------CBEEEEEEHHHHTTS
T ss_pred             hHHHHHhCCC---C--ceEECCCCcHHHHHHHHHHcccCccceeEEEEE-cCC------------CeEEEEEEHHHHHcC
Confidence            5688999972   3  688999999999999997 4     78889996 422            234599999999874


Q ss_pred             HHhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          203 MMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       203 L~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                                ....+++++  |++++++|++++++.+|+++|.++++.++||||++|.
T Consensus       198 ----------~~~~~v~~i--m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~  243 (286)
T 2oux_A          198 ----------DDDTLIADI--LNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDH  243 (286)
T ss_dssp             ----------CTTSBHHHH--SBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCB
T ss_pred             ----------CCCCcHHHH--cCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCe
Confidence                      124577874  8889999999999999999999999999999998774

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.91  E-value=4.2e-09  Score=93.08  Aligned_cols=102  Identities=14%  Similarity=0.199  Sum_probs=84.4

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-c-----CCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHH
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-K-----GIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRF  202 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~-----g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~  202 (262)
                      ..+++++|+.   +  ++++.+++++.+|++.|. .     ++.++||+ ++.            ++.+|+||..|+++.
T Consensus       134 ~~~v~~iM~~---~--~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vv-d~~------------~~lvGivt~~dll~~  195 (278)
T 2yvy_A          134 EDEAGGLMTP---E--YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV-DEK------------GRLKGVLSLRDLIVA  195 (278)
T ss_dssp             TTBGGGTCBS---C--CCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEE-CTT------------CBEEEEEEHHHHHHS
T ss_pred             cchHHhhcCC---C--ceEECCCCcHHHHHHHHHHccCCccceeEEEEE-CCC------------CCEEEEEEHHHHhcC
Confidence            5679999972   3  688999999999999998 3     68899996 422            234599999999863


Q ss_pred             HHhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          203 MMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       203 L~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                                ....++++  +|++++++|++++++.+|+++|.++++..+||||++|.
T Consensus       196 ----------~~~~~v~~--im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~  241 (278)
T 2yvy_A          196 ----------DPRTRVAE--IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGR  241 (278)
T ss_dssp             ----------CTTCBSTT--TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSB
T ss_pred             ----------CCCCcHHH--HhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCe
Confidence                      12457777  48889999999999999999999999999999998774

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.90  E-value=3.8e-11  Score=115.51  Aligned_cols=123  Identities=11%  Similarity=0.137  Sum_probs=62.1

Q ss_pred             eeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHH
Q 046022           29 KVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHI  108 (262)
Q Consensus        29 ~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l  108 (262)
                      ++.++|..  +++++++++|+.+|+++|.++++.++||+|.+.                   ..++++|+||..|+....
T Consensus       109 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-------------------~~~~lvGiVt~~Dl~~~~  167 (514)
T 1jcn_A          109 NFEQGFIT--DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGT-------------------MGSKLVGIVTSRDIDFLA  167 (514)
T ss_dssp             TCCTTSCS--SCCCCCC-----------------CEESCC---------------------------CCEECTTTTC---
T ss_pred             hhhhcccc--CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCC-------------------cCCEEEEEEEHHHHHhhh
Confidence            57899963  567999999999999999999999999998620                   015899999999975421


Q ss_pred             hCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceeccc
Q 046022          109 AGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVES  187 (262)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~  187 (262)
                      .                .....+++++|.. .++  +.++.++++|.+++++|. .+++++||+ +++            
T Consensus       168 ~----------------~~~~~~v~~vm~~-~~~--~~tv~~~~~l~ea~~~m~~~~~~~lpVV-d~~------------  215 (514)
T 1jcn_A          168 E----------------KDHTTLLSEVMTP-RIE--LVVAPAGVTLKEANEILQRSKKGKLPIV-NDC------------  215 (514)
T ss_dssp             -----------------------------C-CBC--CCCEETTCCSTTTTTHHHHHTCSCCCEE-SSS------------
T ss_pred             h----------------ccCCCCHHHHhCC-CCC--CeEECCCCCHHHHHHHHHHcCCCcccEE-CCC------------
Confidence            0                0123579999972 113  578999999999999998 799999996 422            


Q ss_pred             CCeeeEecHHHHHHHHH
Q 046022          188 ASSYQMLTQMDLLRFMM  204 (262)
Q Consensus       188 ~~~~giITqsDIir~L~  204 (262)
                      ++.+|+||++||++.+.
T Consensus       216 g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          216 DELVAIIARTDLKKNRD  232 (514)
T ss_dssp             SCCC----CCCCSSCCC
T ss_pred             CeEEEEEEHHHHHHHhh
Confidence            23359999999988654

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.89  E-value=2.3e-09  Score=103.24  Aligned_cols=105  Identities=13%  Similarity=0.134  Sum_probs=85.1

Q ss_pred             ccccccccccCCCCCeeEEeCCC-CCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPN-TSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~-~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                      ..+|+++|..   +  ++++.++ +++.+|+++|. ++++++||+.+++            ++++||||..||++++...
T Consensus       383 ~~~V~diM~~---~--~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~------------g~lvGiVt~~Dll~~l~~~  445 (527)
T 3pc3_A          383 SLAIAELELP---A--PPVILKSDATVGEAIALMKKHRVDQLPVVDQDD------------GSVLGVVGQETLITQIVSM  445 (527)
T ss_dssp             TSBGGGGCCC---C--CSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT------------CCEEEEEEHHHHHHHHHHH
T ss_pred             CCcHHHhCcC---C--CeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCC------------CEEEEEEEHHHHHHHHHhc
Confidence            4689999972   3  5789999 99999999998 7999999963122            2345999999999998764


Q ss_pred             cccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCC
Q 046022          207 ASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSS  258 (262)
Q Consensus       207 ~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~  258 (262)
                      ..    ....++++  +|++++++|++++++.+|+++|.++++  +||||++
T Consensus       446 ~~----~~~~~V~~--im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~  489 (527)
T 3pc3_A          446 NR----QQSDPAIK--ALNKRVIRLNESEILGKLARVLEVDPS--VLILGKN  489 (527)
T ss_dssp             CC----CTTSBGGG--GEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEEC
T ss_pred             cC----cCCCcHHH--HhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCC
Confidence            22    12457887  499999999999999999999988876  6999984

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.86  E-value=2.5e-10  Score=109.18  Aligned_cols=109  Identities=15%  Similarity=0.215  Sum_probs=0.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022           39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD  118 (262)
Q Consensus        39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~  118 (262)
                      +.+++.|+.||.+|+++|.+++++++||++...                   ..++++||||.+|+ ++  ++       
T Consensus       147 dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~-------------------~~~kLvGIvT~RD~-rf--~d-------  197 (556)
T 4af0_A          147 DPLCLGPDATVGDVLEIKAKFGFCGVPITETGE-------------------PDSKLLGIVTGRDV-QF--QD-------  197 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEcCCCCCHHHHHHHHHHhCCCccccccccC-------------------cCCEEEEEEecccc-cc--cc-------
Confidence            457999999999999999999999999998631                   12689999999994 33  11       


Q ss_pred             CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022          119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM  197 (262)
Q Consensus       119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs  197 (262)
                               ..++|+++|+.   +  ++++.++.++.+|.++|. +++.++||+ |++. ++           .|+||..
T Consensus       198 ---------~~~~V~evMT~---~--lvt~~~~~~leeA~~iL~~~kieklpVV-d~~g-~L-----------vGlIT~k  250 (556)
T 4af0_A          198 ---------AETPIKSVMTT---E--VVTGSSPITLEKANSLLRETKKGKLPIV-DSNG-HL-----------VSLVARS  250 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------cceEhhhhccc---c--eEEecCCCCHHHHHHHHHHccccceeEE-ccCC-cE-----------EEEEEec
Confidence                     13589999982   3  789999999999999998 689999996 4321 34           4999999


Q ss_pred             HHHHHH
Q 046022          198 DLLRFM  203 (262)
Q Consensus       198 DIir~L  203 (262)
                      |+++.-
T Consensus       251 Di~k~~  256 (556)
T 4af0_A          251 DLLKNQ  256 (556)
T ss_dssp             ------
T ss_pred             hhhhhh
Confidence            998754

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.85  E-value=3.1e-09  Score=104.64  Aligned_cols=112  Identities=10%  Similarity=0.095  Sum_probs=82.1

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh--cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS--KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~--~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                      +.+|+++|.. .++  +.++++++++.++.+.|.  ++.+++||+ |++ +++           +|+||++|+++.+..+
T Consensus       452 ~~~V~diM~p-~~~--v~~v~~~~t~~e~~~~~~~~~~~~~~PVv-d~~-~~l-----------vGiVt~~DL~~~l~~~  515 (632)
T 3org_A          452 EMTAREIMHP-IEG--EPHLFPDSEPQHIKGILEKFPNRLVFPVI-DAN-GYL-----------LGAISRKEIVDRLQHV  515 (632)
T ss_dssp             TSBHHHHCBC-TTT--SCCBCSSSCHHHHHHHHHHSTTCCEECBB-CTT-CBB-----------CCEESHHHHTTTTTTC
T ss_pred             cCcHHHHhhc-CCC--ceEecCCCcHHHHHHHHHhcCCcceEEEE-ecC-CeE-----------EEEEEHHHHHHHHHHH
Confidence            4579999972 123  578999999999999998  478899996 432 233           4999999999876543


Q ss_pred             ccc----------------------chhhhc---------------------cccchhcccCcCeEEEeCCCcHHHHHHH
Q 046022          207 ASE----------------------LKDITS---------------------HSIRELGALNENVFAITESTKVIDAIKC  243 (262)
Q Consensus       207 ~~~----------------------l~~l~~---------------------~ti~eL~~~~~~v~tv~~~~~~~~A~~l  243 (262)
                      ...                      +..+..                     .++++  +|++++++|++++++.+|+++
T Consensus       516 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~--iMt~~pitV~~~~~l~ea~~~  593 (632)
T 3org_A          516 LEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVV--PCDVSPIVVTSYSLVRQLHFL  593 (632)
T ss_dssp             -------------------------------------------------------CC--SCCCCCCEEETTCBHHHHHHH
T ss_pred             hhhcccccccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccch--hhcCCCceecCCCcHHHHHHH
Confidence            110                      000000                     02444  599999999999999999999


Q ss_pred             HHhCCCcEEEEEcCCC
Q 046022          244 MRAALLHAVPIVKSSG  259 (262)
Q Consensus       244 M~~~~isav~VVd~~g  259 (262)
                      |.+++++.+||| ++|
T Consensus       594 M~~~~i~~lpVv-e~G  608 (632)
T 3org_A          594 FVMLMPSMIYVT-ERG  608 (632)
T ss_dssp             HHHTCCSEEEEE-ETT
T ss_pred             HHhcCCCEEEEE-ECC
Confidence            999999999999 555

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.82  E-value=1.7e-09  Score=103.28  Aligned_cols=154  Identities=16%  Similarity=0.251  Sum_probs=20.1

Q ss_pred             eeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHH
Q 046022           29 KVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHI  108 (262)
Q Consensus        29 ~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l  108 (262)
                      ...++|.  .+++++++++|+.+|++.|.++++..+||++.                       ++++|+|+..|++.  
T Consensus        94 ~~~~~m~--~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-----------------------~~lvGivt~~Dl~~--  146 (486)
T 2cu0_A           94 RAERLIV--EDVITIAPDETVDFALFLMEKHGIDGLPVVED-----------------------EKVVGIITKKDIAA--  146 (486)
T ss_dssp             TCC-----------------------------------------------------------------------------
T ss_pred             chhhccc--cCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-----------------------CEEEEEEEHHHhcc--
Confidence            3577885  57889999999999999999999999999985                       37999999999874  


Q ss_pred             hCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceeccc
Q 046022          109 AGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVES  187 (262)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~  187 (262)
                       . .                ..++.++|..   +  +.++.+++++.+++++|. ++++++||+ ++.            
T Consensus       147 -~-~----------------~~~v~~im~~---~--~~~v~~~~~l~eal~~m~~~~~~~lpVV-de~------------  190 (486)
T 2cu0_A          147 -R-E----------------GKLVKELMTK---E--VITVPESIEVEEALKIMIENRIDRLPVV-DER------------  190 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -C-C----------------CCCHHHHccC---C--CeEECCcCcHHHHHHHHHHcCCCEEEEE-ecC------------
Confidence             1 1                2378999972   2  578999999999999998 689999996 322            


Q ss_pred             CCeeeEecHHHHHHHHHhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          188 ASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       188 ~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      +..+|+||.+||++.+... ..    ....-..  ++-.  -.+.. .. .+.+..|.+.++..+ |++.
T Consensus       191 g~lvGiiT~~Dil~~~~~~-~~----~~~~~g~--~~v~--~~~~~-~~-~~~a~~l~~~gvd~l-vvdt  248 (486)
T 2cu0_A          191 GKLVGLITMSDLVARKKYK-NA----VRDENGE--LLVA--AAVSP-FD-IKRAIELDKAGVDVI-VVDT  248 (486)
T ss_dssp             ----------------CCT-TC----CBCTTSC--BCCE--EEECT-TC-HHHHHHHHHTTCSEE-EEEC
T ss_pred             CeEEEEEEHHHHHHhhhcc-cc----ccccCCc--eeec--ceech-hh-HHHHHHHHHhcCCce-EEEe
Confidence            2345999999999975321 00    0000011  1111  12223 33 677888999999886 5553

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.75  E-value=2.3e-08  Score=95.22  Aligned_cols=102  Identities=14%  Similarity=0.209  Sum_probs=84.6

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHhc------CCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHH
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSK------GIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRF  202 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~------g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~  202 (262)
                      ..+++++|+.   +  +.++.+++++.+|++.|.+      ++.++||+ +++            ++.+|+||..|+++.
T Consensus       154 ~~~v~~iM~~---~--~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVv-d~~------------~~lvGiVt~~Dll~~  215 (473)
T 2zy9_A          154 EDEAGGLMTP---E--YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV-DEK------------GRLKGVLSLRDLIVA  215 (473)
T ss_dssp             TTBSTTTCBS---C--EEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEE-CTT------------SBEEEEEEHHHHHHS
T ss_pred             CCCHHHhCCC---C--ceEeCCCCcHHHHHHHHHhccCCcCceeEEEEE-CCC------------CcEEEEEEHHHHhcC
Confidence            5678999972   3  7899999999999999983      47899996 432            234599999999862


Q ss_pred             HHhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          203 MMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       203 L~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                                -.+.++++  +|+++++++++++++.+|+++|.++++.++||||++|.
T Consensus       216 ----------~~~~~v~d--im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~  261 (473)
T 2zy9_A          216 ----------DPRTRVAE--IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGR  261 (473)
T ss_dssp             ----------CTTSBGGG--TSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSB
T ss_pred             ----------CCCCcHHH--HhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCE
Confidence                      13567887  49889999999999999999999999999999998874

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.65  E-value=2.7e-08  Score=70.36  Aligned_cols=68  Identities=15%  Similarity=0.225  Sum_probs=51.9

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      ++++.|++++.+|+++|. ++++++||..+              ++++||||.+||++.+..+..   ...+.++++  +
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~--------------~~lvGIvT~~Di~~~~~~~~~---~~~~~~V~~--i   62 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG--------------DEILGVVTERDILDKVVAKGK---NPKEVKVEE--I   62 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET--------------TEEEEEEEHHHHHHHTTTTTC---CGGGCBGGG--T
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC--------------CEEEEEEEHHHHHHHHHhcCC---CcccCCHHH--h
Confidence            578999999999999998 79999999632              134599999999987654321   123457887  5


Q ss_pred             cCcCeEEE
Q 046022          224 LNENVFAI  231 (262)
Q Consensus       224 ~~~~v~tv  231 (262)
                      |+++++||
T Consensus        63 Mt~~~iTV   70 (70)
T 3ghd_A           63 MTKNPVKI   70 (70)
T ss_dssp             CEECTTCC
T ss_pred             cCCCCeEC
Confidence            99888764

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.55  E-value=9.4e-08  Score=91.90  Aligned_cols=94  Identities=16%  Similarity=0.228  Sum_probs=77.0

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      ++++.+++++.+++++|. .++.++||+.++..           ++++||||..|+.+   .      .-.+.+++++  
T Consensus       123 ~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~-----------~~lvGiVt~rDl~~---~------~~~~~~V~~v--  180 (511)
T 3usb_A          123 PFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDE-----------RKLVGIITNRDMRF---I------QDYSIKISDV--  180 (511)
T ss_dssp             CCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTT-----------CBEEEEEEHHHHTT---C------CCSSSBHHHH--
T ss_pred             CEEECCCCCHHHHHHHHHHcCCcEEEEEecCCC-----------CEEEEEEEehHhhh---h------ccCCCcHHHh--
Confidence            468999999999999998 69999999643111           23459999999954   1      1125678885  


Q ss_pred             cCc-CeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNE-NVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~-~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      |++ +++++++++++.+|+++|.++++..+||||++|.
T Consensus       181 M~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~  218 (511)
T 3usb_A          181 MTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGV  218 (511)
T ss_dssp             CCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSB
T ss_pred             cccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCC
Confidence            887 8999999999999999999999999999998874

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.53  E-value=2.1e-07  Score=88.68  Aligned_cols=101  Identities=14%  Similarity=0.179  Sum_probs=81.3

Q ss_pred             cccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccc
Q 046022          132 VSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASEL  210 (262)
Q Consensus       132 V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l  210 (262)
                      +.++|..   +  ++++.+++++.+++++|. +++.++||+.+++.           ++++|+||..|+++..    +  
T Consensus        92 ~~~im~~---~--~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-----------~~lvGivt~~Dl~~~~----~--  149 (491)
T 1zfj_A           92 SENGVII---D--PFFLTPEHKVSEAEELMQRYRISGVPIVETLAN-----------RKLVGIITNRDMRFIS----D--  149 (491)
T ss_dssp             HTTTTSS---S--CCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT-----------CBEEEEEEHHHHHHCS----C--
T ss_pred             HHhcCcC---C--CeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCC-----------CEEEEEEEHHHHhhhc----c--
Confidence            5678872   3  577999999999999998 78999999641011           2345999999998631    1  


Q ss_pred             hhhhccccchhcccCc-CeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022          211 KDITSHSIRELGALNE-NVFAITESTKVIDAIKCMRAALLHAVPIVKSSG  259 (262)
Q Consensus       211 ~~l~~~ti~eL~~~~~-~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g  259 (262)
                         .+.++++  +|++ +++++++++++.+|+++|.++++..+||||++|
T Consensus       150 ---~~~~v~~--im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g  194 (491)
T 1zfj_A          150 ---YNAPISE--HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG  194 (491)
T ss_dssp             ---SSSBTTT--SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTS
T ss_pred             ---CCCcHHH--HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC
Confidence               2457777  4887 899999999999999999999999999999876

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.44  E-value=2.4e-08  Score=95.56  Aligned_cols=94  Identities=18%  Similarity=0.290  Sum_probs=0.0

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      ++++.|++++.+|+++|. .++..+||+.++.          .+++++||||.+|+ ||-  .       .+.++++  +
T Consensus       148 Pvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~----------~~~kLvGIvT~RD~-rf~--d-------~~~~V~e--v  205 (556)
T 4af0_A          148 PLCLGPDATVGDVLEIKAKFGFCGVPITETGE----------PDSKLLGIVTGRDV-QFQ--D-------AETPIKS--V  205 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeEcCCCCCHHHHHHHHHHhCCCccccccccC----------cCCEEEEEEecccc-ccc--c-------cceEhhh--h
Confidence            478999999999999998 6889999975432          12455699999995 552  1       1457888  4


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      |+++++++.+..++.+|.++|.++++..+||||++|+
T Consensus       206 MT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~  242 (556)
T 4af0_A          206 MTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGH  242 (556)
T ss_dssp             -------------------------------------
T ss_pred             cccceEEecCCCCHHHHHHHHHHccccceeEEccCCc
Confidence            9999999999999999999999999999999999874

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.39  E-value=3.6e-08  Score=94.59  Aligned_cols=96  Identities=17%  Similarity=0.182  Sum_probs=0.0

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      ++++.+++++.+++++|. ++++++||+.++..          .++++||||..||++.  .      .....++++  +
T Consensus       107 ~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~----------~g~lvGiVt~~Dl~~~--~------~~~~~~V~d--i  166 (503)
T 1me8_A          107 DSNVKPDQTFADVLAISQRTTHNTVAVTDDGTP----------HGVLLGLVTQRDYPID--L------TQTETKVSD--M  166 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeEECCCCcHHHHHHHHHHcCceEEEEEECCCc----------CCeEEEEEEHHHHHhh--h------ccccCcHHH--H
Confidence            578999999999999998 68999999633200          0234599999999864  1      113457787  4


Q ss_pred             cCcC--eEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNEN--VFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~--v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      |+++  ++++++++++.+|+++|.+++++.+||||++|.
T Consensus       167 M~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~  205 (503)
T 1me8_A          167 MTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQH  205 (503)
T ss_dssp             ---------------------------------------
T ss_pred             hCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCe
Confidence            8876  999999999999999999999999999998764

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.38  E-value=1.9e-07  Score=80.42  Aligned_cols=65  Identities=9%  Similarity=0.214  Sum_probs=51.8

Q ss_pred             HHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEe
Q 046022           21 NQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLT  100 (262)
Q Consensus        21 ~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs  100 (262)
                      .+....+.+++|+|.. ++++++++++++.+|++.|.++++.++||+|++                      ++++|+|+
T Consensus       178 ~~~~~~~~~v~~im~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~----------------------~~~~Giit  234 (245)
T 3l2b_A          178 SRLIVQSLPVDYVMTK-DNLVAVSTDDLVEDVKVTMSETRYSNYPVIDEN----------------------NKVVGSIA  234 (245)
T ss_dssp             HHHGGGGSBHHHHSBC-TTCCCEETTSBHHHHHHHHHHHCCSEEEEECTT----------------------CBEEEEEE
T ss_pred             HHHHhcCCceeeEecC-CccEEECCCCcHHHHHHHHHhcCCceEEEEcCC----------------------CeEEEEEE
Confidence            3445567889999963 577899999999999999999999999999875                      68999999


Q ss_pred             HHHHHHHH
Q 046022          101 MLDILAHI  108 (262)
Q Consensus       101 ~~Dil~~l  108 (262)
                      ..|++++.
T Consensus       235 ~~dll~~~  242 (245)
T 3l2b_A          235 RFHLISTH  242 (245)
T ss_dssp             CC------
T ss_pred             HHHhhchh
Confidence            99998764

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.37  E-value=1.3e-07  Score=90.66  Aligned_cols=101  Identities=15%  Similarity=0.145  Sum_probs=71.9

Q ss_pred             ccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc
Q 046022          131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE  209 (262)
Q Consensus       131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~  209 (262)
                      .+.++|..   +  ++++.+++++.+++++|. .++.++||+.+ +            ++++||||..|+..   .    
T Consensus        90 ~~~~~m~~---d--~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~-~------------~~lvGiVt~rDL~~---~----  144 (496)
T 4fxs_A           90 IFEAGVVT---H--PVTVRPEQTIADVMELTHYHGFAGFPVVTE-N------------NELVGIITGRDVRF---V----  144 (496)
T ss_dssp             HCCC--CB---C--CCCBCSSSBHHHHHHHHTSSCCCEEEEECS-S------------SBEEEEEEHHHHTT---C----
T ss_pred             cccccccc---C--ceEECCCCCHHHHHHHHHHcCCcEEEEEcc-C------------CEEEEEEEHHHHhh---c----
Confidence            45667762   3  578999999999999998 68999999633 2            23459999999851   1    


Q ss_pred             chhhhccccchhcccC-c-CeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          210 LKDITSHSIRELGALN-E-NVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       210 l~~l~~~ti~eL~~~~-~-~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                        .-...+++++  |+ + +++++++++++.+|+++|.++++..+||||++|.
T Consensus       145 --~~~~~~v~di--M~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~  193 (496)
T 4fxs_A          145 --TDLTKSVAAV--MTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQ  193 (496)
T ss_dssp             --CCTTSBGGGT--SEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSB
T ss_pred             --ccCCCcHHHH--hcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCC
Confidence              1134567874  87 4 5999999999999999999999999999999875

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.34  E-value=6e-08  Score=92.61  Aligned_cols=101  Identities=14%  Similarity=0.197  Sum_probs=1.0

Q ss_pred             ccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc
Q 046022          131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE  209 (262)
Q Consensus       131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~  209 (262)
                      .+.++|..   +  +.++.+++++.+|+++|. +++.++||+ +++            ++++||||..||.+.  .  + 
T Consensus        96 ~~~~iM~~---~--~~~v~~~~tv~ea~~~m~~~~~~~~pVv-d~~------------~~lvGivt~~Dl~~~--~--~-  152 (494)
T 1vrd_A           96 KTENGIIY---D--PITVTPDMTVKEAIDLMAEYKIGGLPVV-DEE------------GRLVGLLTNRDVRFE--K--N-  152 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCcc---C--CeEECCCCCHHHHHHHHHHcCceEEEEE-cCC------------CEEEEEEEHHHHHhh--c--C-
Confidence            35777862   3  678999999999999998 688899996 322            234599999999862  1  1 


Q ss_pred             chhhhccccchhcccCc--CeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          210 LKDITSHSIRELGALNE--NVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       210 l~~l~~~ti~eL~~~~~--~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                          ...++++  +|++  +++++++++++.+|+++|.++++..+||||++|.
T Consensus       153 ----~~~~v~~--im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~  199 (494)
T 1vrd_A          153 ----LSKKIKD--LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNK  199 (494)
T ss_dssp             -----------------------------------------------------
T ss_pred             ----CCCcHHH--HhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCe
Confidence                2456777  4887  8999999999999999999999999999998763

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.26  E-value=1e-07  Score=91.13  Aligned_cols=100  Identities=13%  Similarity=0.142  Sum_probs=2.6

Q ss_pred             ccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc
Q 046022          131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE  209 (262)
Q Consensus       131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~  209 (262)
                      .+.++|..   +  +.++.+++++.+++++|. +++.++||+. +  +++           +||||..|+. |..     
T Consensus        89 ~~~~~m~~---~--~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~--g~l-----------vGIVt~rDl~-~~~-----  143 (490)
T 4avf_A           89 KHETAIVR---D--PVTVTPSTKIIELLQMAREYGFSGFPVVE-Q--GEL-----------VGIVTGRDLR-VKP-----  143 (490)
T ss_dssp             HCCC----------------------------------------------------------------------------
T ss_pred             ccccCccc---C--ceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C--CEE-----------EEEEEhHHhh-hcc-----
Confidence            46777762   3  578999999999999998 6899999964 2  234           4999999984 221     


Q ss_pred             chhhhccccchhcccC-c-CeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          210 LKDITSHSIRELGALN-E-NVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       210 l~~l~~~ti~eL~~~~-~-~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                         -.+.++++  +|+ + +++++++++++.+|+++|.++++..+||||++|.
T Consensus       144 ---~~~~~V~~--vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~  191 (490)
T 4avf_A          144 ---NAGDTVAA--IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFY  191 (490)
T ss_dssp             -----------------------------------------------------
T ss_pred             ---ccCCcHHH--HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCc
Confidence               12456777  488 4 6999999999999999999999999999998774

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.20  E-value=1e-07  Score=91.51  Aligned_cols=106  Identities=13%  Similarity=0.147  Sum_probs=57.4

Q ss_pred             ccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc
Q 046022          131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE  209 (262)
Q Consensus       131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~  209 (262)
                      .+.++|..   +  +.++.+++++.+|+++|. ++++++||+.++..          +++++||||..|+.+...     
T Consensus       109 ~~~~im~~---~--~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~----------~~~lvGiVt~~Dl~~~~~-----  168 (514)
T 1jcn_A          109 NFEQGFIT---D--PVVLSPSHTVGDVLEAKMRHGFSGIPITETGTM----------GSKLVGIVTSRDIDFLAE-----  168 (514)
T ss_dssp             TCCTTSCS---S--CCCCCC-----------------CEESCC------------------CCEECTTTTC---------
T ss_pred             hhhhcccc---C--CEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCc----------CCEEEEEEEHHHHHhhhh-----
Confidence            46788862   3  467999999999999998 68899999633100          123459999999876321     


Q ss_pred             chhhhccccchhcccCc--CeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          210 LKDITSHSIRELGALNE--NVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       210 l~~l~~~ti~eL~~~~~--~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                        .....++++  +|++  +++++.+++++.+|+++|.++++..+||||++|.
T Consensus       169 --~~~~~~v~~--vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~  217 (514)
T 1jcn_A          169 --KDHTTLLSE--VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDE  217 (514)
T ss_dssp             ----------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSC
T ss_pred             --ccCCCCHHH--HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCe
Confidence              112456777  4887  8999999999999999999999999999998774

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.03  E-value=6.6e-07  Score=85.37  Aligned_cols=97  Identities=21%  Similarity=0.389  Sum_probs=0.9

Q ss_pred             cccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccc
Q 046022          132 VSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASEL  210 (262)
Q Consensus       132 V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l  210 (262)
                      +.++|..   +  ++++.+++++.+++++|. .+..++||+ ++  +++           +|+||..|+++   .     
T Consensus        95 ~~~~m~~---~--~~~v~~~~tv~ea~~~~~~~~~~~~pVv-d~--~~l-----------vGivt~~Dl~~---~-----  147 (486)
T 2cu0_A           95 AERLIVE---D--VITIAPDETVDFALFLMEKHGIDGLPVV-ED--EKV-----------VGIITKKDIAA---R-----  147 (486)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             hhhcccc---C--ceEECCCCCHHHHHHHHHHcCCcEEEEE-EC--CEE-----------EEEEEHHHhcc---C-----
Confidence            3556652   3  678999999999999998 688899996 33  234           49999999875   1     


Q ss_pred             hhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          211 KDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       211 ~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                         ...++++  +|+++++++++++++.+|+++|.++++..+||||++|.
T Consensus       148 ---~~~~v~~--im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~  192 (486)
T 2cu0_A          148 ---EGKLVKE--LMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGK  192 (486)
T ss_dssp             --------------------------------------------------
T ss_pred             ---CCCCHHH--HccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCe
Confidence               2456777  48888999999999999999999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	262
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-05
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	0.004

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 30/188 (15%), Positives = 58/188 (30%), Gaps = 35/188 (18%)

Query: 22  QRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMI 81
              ++  +  DL     ++V    +  +     ALV N V A P+     Q         
Sbjct: 7   TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQ--------- 57

Query: 82  MESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPE 141
                        ++GMLT+ D +  +    +         +  K  +     +      
Sbjct: 58  ------------SFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKP 105

Query: 142 GLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLR 201
            +    +SPN S+ D +    +     L  +D    N   +           LT   +L+
Sbjct: 106 LV---CISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYI-----------LTHKRILK 151

Query: 202 FMMNHASE 209
           F+    +E
Sbjct: 152 FLKLFITE 159

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 26/191 (13%), Positives = 55/191 (28%), Gaps = 27/191 (14%)

Query: 22  QRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMI 81
           Q  +R     D+     R++    T  +  +++ L  N                   + +
Sbjct: 14  QAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLN---------------NIVSAPL 58

Query: 82  MESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPE 141
            +S+    A        + ++      +   +     D    L  +        I     
Sbjct: 59  WDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPET- 117

Query: 142 GLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLR 201
                 + P  S++D     SK   R +  +D          +V       +LTQ  +L+
Sbjct: 118 ----IYVHPMHSLMDACLAMSKSRARRIPLIDV-DGETGSEMIV------SVLTQYRILK 166

Query: 202 FMMNHASELKD 212
           F+  +  E   
Sbjct: 167 FISMNCKETAM 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.89
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.89
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.82
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.78
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.78
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.78
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.77
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.77
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.77
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.76
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.75
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.74
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.73
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.73
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.72
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.72
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.71
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.7
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.7
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.69
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.68
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.68
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.66
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.64
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.64
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.54
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.51
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.5
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.5
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.48
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.46
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.46
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.45
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.45
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.44
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.41
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.41
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.41
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.4
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.38
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.36
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.34
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.29
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.26
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.26
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.25
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.25
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.25
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.24
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.18
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.18
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.13

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.89  E-value=6.2e-24  Score=174.70  Aligned_cols=163  Identities=20%  Similarity=0.187  Sum_probs=120.3

Q ss_pred             CcchHHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCe
Q 046022           15 KHAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKH   94 (262)
Q Consensus        15 ~~~~~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~   94 (262)
                      +.+..+.+.||.+.+++|+|..+.+++++++++|+.+|++.|.+++++++||||+++                     ++
T Consensus         7 ~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~---------------------~~   65 (179)
T d2ooxe1           7 KGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA---------------------NK   65 (179)
T ss_dssp             HHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTT---------------------TE
T ss_pred             HHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCC---------------------Ce
Confidence            446677789999999999998778999999999999999999999999999999653                     68


Q ss_pred             EEEEEeHHHHHHHHhCC---CCCCCCCC--CcchHH-hhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCe
Q 046022           95 YIGMLTMLDILAHIAGD---DQMNGSDD--APDDLD-KKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHR  167 (262)
Q Consensus        95 ~vGivs~~Dil~~l~~~---~~l~~~~~--~~~~~~-~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~r  167 (262)
                      ++|+||..|++.++...   ........  ...... ......+..+|..   +  ++++.++++|.+|++.|. +++||
T Consensus        66 ~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~i~v~~~~sl~~~~~~m~~~~~~~  140 (179)
T d2ooxe1          66 FAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPP---E--TIYVHPMHSLMDACLAMSKSRARR  140 (179)
T ss_dssp             EEEEECHHHHHHHHHHHHHHCSCGGGGGGGGGSBHHHHHHHHHHTTCSCS---S--CCCBCTTSBHHHHHHHHHHTTCSE
T ss_pred             eEEEEeechHHHHHHhccccccchhhhhhhhccchhhhcccceeeeeccc---C--ceEECCCCcHHHHHHHhhhcCceE
Confidence            99999999999987631   10000000  000000 0012234445542   2  689999999999999998 79999


Q ss_pred             eEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccch
Q 046022          168 ALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELK  211 (262)
Q Consensus       168 v~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~  211 (262)
                      +||+.+++..        +++.++|||||+||++||+.|..+..
T Consensus       141 lpVvd~~g~~--------~~~~vvgiiT~~dIlk~l~~~~~~~~  176 (179)
T d2ooxe1         141 IPLIDVDGET--------GSEMIVSVLTQYRILKFISMNCKETA  176 (179)
T ss_dssp             EEEEEECTTT--------CCEEEEEEEEHHHHHHHHHTTCGGGG
T ss_pred             EEEEecCCCc--------CCCcEEEEEeHHHHHHHHHHhhhHhh
Confidence            9996433210        12345799999999999999876543

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=2.4e-23  Score=167.95  Aligned_cols=151  Identities=20%  Similarity=0.264  Sum_probs=114.7

Q ss_pred             HHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEE
Q 046022           20 ENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGML   99 (262)
Q Consensus        20 ~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGiv   99 (262)
                      -+.+||.+.+++|+|..+.++++++.++|+.+|++.|.+|+++++||++.++                     ++++|+|
T Consensus         5 ~~~~~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~---------------------~~~vG~i   63 (159)
T d2v8qe2           5 VYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKK---------------------QSFVGML   63 (159)
T ss_dssp             HHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTT---------------------TEEEEEE
T ss_pred             HHHHHhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCC---------------------CcEEEEE
Confidence            4678999999999998888999999999999999999999999999998653                     6899999


Q ss_pred             eHHHHHHHHhCCCCCC--CCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCC
Q 046022          100 TMLDILAHIAGDDQMN--GSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRM  176 (262)
Q Consensus       100 s~~Dil~~l~~~~~l~--~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~  176 (262)
                      +..|++.++.......  ................+.++|..   .  ++++.|+++|.+|+++|. +|+||+||+ +++.
T Consensus        64 s~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~v~~~~~l~~v~~~m~~~~~~~v~Vv-d~~~  137 (159)
T d2v8qe2          64 TITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFK---P--LVCISPNASLFDAVSSLIRNKIHRLPVI-DPES  137 (159)
T ss_dssp             EHHHHHHHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCC---C--CCCBCTTSBHHHHHHHHHHHTCSCEEEE-CTTT
T ss_pred             EHHHHHHHHHhccccccchhhhhhhhhcccccceeeeeecc---c--eEEECCCCcHHHHHHHHHHhCCeEEEEE-ECCC
Confidence            9999999876411000  00000000011122344556651   2  688999999999999998 699999995 4322


Q ss_pred             cccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          177 ENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       177 ~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                                 +.+.|||||+||+|||+.+++
T Consensus       138 -----------g~~~GivT~~dilk~l~~~~~  158 (159)
T d2v8qe2         138 -----------GNTLYILTHKRILKFLKLFIT  158 (159)
T ss_dssp             -----------CCEEEEECHHHHHHHHHHHSC
T ss_pred             -----------CeEEEEEeHHHHHHHHHHHcC
Confidence                       345699999999999998865

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.82  E-value=3.2e-20  Score=145.62  Aligned_cols=131  Identities=19%  Similarity=0.260  Sum_probs=107.6

Q ss_pred             cceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022           27 EAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA  106 (262)
Q Consensus        27 ~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~  106 (262)
                      +.+|+++|+++.+++++.+++|+.+|++.|.+++++++||+|++                      ++++|+++..||+.
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~----------------------~~~vGiit~~di~~   58 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS----------------------YRLHGLIGTNMIMN   58 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT----------------------CBEEEEEEHHHHHH
T ss_pred             CCCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecc----------------------cccccEEEcchhHH
Confidence            46899999888899999999999999999999999999999865                      68999999999999


Q ss_pred             HHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCeeEeecCCCCcccccceecc
Q 046022          107 HIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       107 ~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      ++......        ........+|+++|..   +  +.++.+++++.+++.+|.+. +.+||+ +++           
T Consensus        59 ~~~~~~~~--------~~~~~~~~~v~~~m~~---~--~~~v~~~~~l~~~~~~~~~~-~~l~Vv-d~~-----------  112 (132)
T d1yava3          59 SIFGLERI--------EFEKLDQITVEEVMLT---D--IPRLHINDPIMKGFGMVINN-GFVCVE-NDE-----------  112 (132)
T ss_dssp             HHBCSSSB--------CGGGTTTSBHHHHSBC---S--CCEEETTSBHHHHHHHTTTC-SEEEEE-CTT-----------
T ss_pred             Hhhccccc--------cccccccccccccccc---c--ccccccchhHHHHHHHHHhC-CEEEEE-ccC-----------
Confidence            99863322        1223345689999973   3  57899999999999999853 458885 432           


Q ss_pred             cCCeeeEecHHHHHHHHHhh
Q 046022          187 SASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~~~  206 (262)
                       |..+||||++||++++.++
T Consensus       113 -~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3         113 -QVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             -CBEEEEEEHHHHHHHHHHH
T ss_pred             -CEEEEEEEHHHHHHHHHhh
Confidence             2446999999999999875

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=4.4e-20  Score=143.19  Aligned_cols=121  Identities=18%  Similarity=0.291  Sum_probs=98.8

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      +||+|+|.  ++++++.+++|+.+|++.|.++++.++||+|++                      ++++|+||..||+.+
T Consensus         1 tt~~diM~--~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~----------------------~~~~Giit~~Di~~~   56 (123)
T d1y5ha3           1 TTARDIMN--AGVTCVGEHETLTAAAQYMREHDIGALPICGDD----------------------DRLHGMLTDRDIVIK   56 (123)
T ss_dssp             CCHHHHSE--ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG----------------------GBEEEEEEHHHHHHT
T ss_pred             CCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCCceEEEecc----------------------chhhhhhhhhhHhhh
Confidence            57999995  468899999999999999999999999999864                      689999999999887


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      +.....            .....+++++|..   +  +.++.+++++.+|+++|. ++++++||+.+ +  +        
T Consensus        57 ~~~~~~------------~~~~~~v~~im~~---~--~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~-~--~--------  108 (123)
T d1y5ha3          57 GLAAGL------------DPNTATAGELARD---S--IYYVDANASIQEMLNVMEEHQVRRVPVISE-H--R--------  108 (123)
T ss_dssp             TGGGTC------------CTTTSBHHHHHTT---C--CCCEETTCCHHHHHHHHHHHTCSEEEEEET-T--E--------
T ss_pred             hhhcCC------------CcccceEEEEeec---c--ceeeeecchHHHHHHHHHHcCceEEEEEEC-C--E--------
Confidence            654211            0113467889872   3  578999999999999998 79999999632 2  2        


Q ss_pred             cCCeeeEecHHHHHHHH
Q 046022          187 SASSYQMLTQMDLLRFM  203 (262)
Q Consensus       187 ~~~~~giITqsDIir~L  203 (262)
                         .+|+||++||+|+|
T Consensus       109 ---lvGiit~~Dil~~l  122 (123)
T d1y5ha3         109 ---LVGIVTEADIARHL  122 (123)
T ss_dssp             ---EEEEEEHHHHHHTC
T ss_pred             ---EEEEEEHHHHHhhC
Confidence               35999999999975

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.78  E-value=3.8e-19  Score=138.63  Aligned_cols=122  Identities=21%  Similarity=0.271  Sum_probs=100.8

Q ss_pred             eeccccccC-CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           29 KVRDLTAEK-RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        29 ~v~dlm~~~-~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      ||+|||..| ++++++++++|+.+|++.|.+++++++||++.                       ++++|++|..||++.
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~-----------------------~~~vGiit~~Di~~~   59 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD-----------------------EKLVGILTERDFSRK   59 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEET-----------------------TEEEEEEEHHHHHHH
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEEC-----------------------CeEEEEEEccchhhh
Confidence            689999653 58999999999999999999999999999973                       589999999999987


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      +.....            .....+++++|..   +  +.++.+++++.+|+++|. ++++++||+ +++  +        
T Consensus        60 ~~~~~~------------~~~~~~v~~im~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~~--~--------  111 (127)
T d2rc3a1          60 SYLLDK------------PVKDTQVKEIMTR---Q--VAYVDLNNTNEDCMALITEMRVRHLPVL-DDG--K--------  111 (127)
T ss_dssp             GGGSSS------------CGGGSBGGGTSBC---S--CCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETT--E--------
T ss_pred             hhhhcc------------cccceeEeeeccc---e--eEEeccCccHHHHHHHHHHCCCcEEEEE-ECC--E--------
Confidence            754211            1234589999973   3  578999999999999998 799999997 321  2        


Q ss_pred             cCCeeeEecHHHHHHHHH
Q 046022          187 SASSYQMLTQMDLLRFMM  204 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~  204 (262)
                         ++|+||++||++.+.
T Consensus       112 ---~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1         112 ---VIGLLSIGDLVKDAI  126 (127)
T ss_dssp             ---EEEEEEHHHHHHHHH
T ss_pred             ---EEEEEEHHHHHHHHh
Confidence               359999999999874

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.78  E-value=4.6e-19  Score=140.14  Aligned_cols=132  Identities=16%  Similarity=0.225  Sum_probs=104.2

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      .+|+|+|..  +++++++++|+.+|++.|.+++++++||+|.+                      ++++|+||..|++++
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~----------------------~~~~Giit~~dl~~~   57 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN----------------------KKLLGIVSQRDLLAA   57 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT----------------------CBEEEEEEHHHHHHH
T ss_pred             EEHHHhCcC--CCeEECCcCCHHHHHHHHHHcCCCeeeeeccc----------------------ccccccccHHHHHHH
Confidence            479999963  67899999999999999999999999999865                      689999999999988


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      +......     ...........||+++|..   +  +.++.+++++.+|+++|. ++++++||+.+ +  +        
T Consensus        58 ~~~~~~~-----~~~~~~~~~~~~v~~im~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~--~--------  116 (139)
T d2o16a3          58 QESSLQR-----SAQGDSLAFETPLFEVMHT---D--VTSVAPQAGLKESAIYMQKHKIGCLPVVAK-D--V--------  116 (139)
T ss_dssp             HHHHCC--------------CCCBHHHHSCS---C--EEEBCTTSBHHHHHHHHHHTTCSCEEEEET-T--E--------
T ss_pred             HHhhhhh-----hhcccccccccchhHhhcc---c--cccccccchHHHHHHHHHHcCceEEEEEEC-C--E--------
Confidence            7642100     0000112346789999972   3  689999999999999998 79999999633 2  2        


Q ss_pred             cCCeeeEecHHHHHHHHHhhc
Q 046022          187 SASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~~~~  207 (262)
                         .+|+||.+||++++.+..
T Consensus       117 ---lvGiit~~Dil~~~~~~~  134 (139)
T d2o16a3         117 ---LVGIITDSDFVTIAINLL  134 (139)
T ss_dssp             ---EEEEECHHHHHHHHHHHH
T ss_pred             ---EEEEEEHHHHHHHHHHHH
Confidence               359999999999998754

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=1.5e-19  Score=144.96  Aligned_cols=136  Identities=16%  Similarity=0.243  Sum_probs=102.5

Q ss_pred             hcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHH
Q 046022           26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDIL  105 (262)
Q Consensus        26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil  105 (262)
                      .+.++.++|.  ++++++++++++.+|+++|.+|+++++||+|++                      ++++|++|..|++
T Consensus         2 ~~~~v~~~m~--r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~----------------------~~lvG~it~~Dl~   57 (156)
T d2yzqa1           2 KGVEIEPYYQ--RYVSIVWEGTPLKAALKALLLSNSMALPVVDSE----------------------GNLVGIVDETDLL   57 (156)
T ss_dssp             GGCBSTTTSB--SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT----------------------SCEEEEEEGGGGG
T ss_pred             CCCCHHHHhc--CCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCC----------------------CCceeEEeeeech
Confidence            5789999994  579999999999999999999999999999875                      6899999999988


Q ss_pred             HHHhCCCCCCC------CC------CC-----cchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCe
Q 046022          106 AHIAGDDQMNG------SD------DA-----PDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHR  167 (262)
Q Consensus       106 ~~l~~~~~l~~------~~------~~-----~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~r  167 (262)
                      ..+........      ..      ..     ..........+|.++|+.   +  ++++.++++|.++++.|. +++|+
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~---~--~~tv~~~~~l~~~~~~m~~~~~~~  132 (156)
T d2yzqa1          58 RDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTR---D--VIVATPHMTVHEVALKMAKYSIEQ  132 (156)
T ss_dssp             GCGGGCC--------------------------------CCCBGGGTCBS---S--CCCBCTTSBHHHHHHHHHHHTCSE
T ss_pred             hhhcccccccccccccchhhhhhhhhhhhhhHHHhhhcccCCEeehhccc---C--ceEECcccccHHHHHHHHHcCeeE
Confidence            75543211100      00      00     000112236689999973   3  578999999999999998 79999


Q ss_pred             eEeecCCCCcccccceecccCCeeeEecHHHHHHHH
Q 046022          168 ALVPMDSRMENISGVELVESASSYQMLTQMDLLRFM  203 (262)
Q Consensus       168 v~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L  203 (262)
                      +||+ +++            |++.||||++||+++|
T Consensus       133 lpVv-d~~------------g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1         133 LPVI-RGE------------GDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             EEEE-ETT------------TEEEEEEEHHHHGGGG
T ss_pred             EEEE-eCC------------CEEEEEEEHHHHHHHh
Confidence            9996 332            2345999999999986

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=1.2e-18  Score=136.56  Aligned_cols=125  Identities=18%  Similarity=0.261  Sum_probs=104.6

Q ss_pred             cceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022           27 EAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA  106 (262)
Q Consensus        27 ~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~  106 (262)
                      ..+|+|+|.  ++++++++++|+.+|++.|.++++.++||+|++                      ++++|+|+..|++.
T Consensus         4 ~~pV~~im~--~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~----------------------~~~~Giit~~di~~   59 (132)
T d2yzia1           4 KAPIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD----------------------GNVVGFFTKSDIIR   59 (132)
T ss_dssp             TSBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT----------------------SCEEEEEEHHHHHH
T ss_pred             CCcHHHHcC--CCCeEECCcCcHHHHHHHHHHcCCcEEEEeccc----------------------ceeeeeeeHHHHHH
Confidence            357999995  478999999999999999999999999999975                      68999999999999


Q ss_pred             HHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceec
Q 046022          107 HIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELV  185 (262)
Q Consensus       107 ~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~  185 (262)
                      .+.....             ....+++++|..   +  +.++.+++++.+|++.|. ++++++||. ++           
T Consensus        60 ~~~~~~~-------------~~~~~v~~im~~---~--~~~v~~~~~~~~~~~~m~~~~~~~l~V~-~~-----------  109 (132)
T d2yzia1          60 RVIVPGL-------------PYDIPVERIMTR---N--LITANVNTPLGEVLRKMAEHRIKHILIE-EE-----------  109 (132)
T ss_dssp             HTTTTCC-------------CTTSBGGGTCBC---S--CCEEETTSBHHHHHHHHHHHTCSEEEEE-ET-----------
T ss_pred             HHhhccC-------------ccceeEeecccc---c--ccccCcchHHHHHHHHHHHcCCCEEEEE-EC-----------
Confidence            8775321             124589999973   3  578999999999999998 799999985 32           


Q ss_pred             ccCCeeeEecHHHHHHHHHhhc
Q 046022          186 ESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       186 ~~~~~~giITqsDIir~L~~~~  207 (262)
                        ++.+|+||++||++.+.+.+
T Consensus       110 --~~~vGivt~~Dil~a~~~~l  129 (132)
T d2yzia1         110 --GKIVGIFTLSDLLEASRRRL  129 (132)
T ss_dssp             --TEEEEEEEHHHHHHHHHCCS
T ss_pred             --CEEEEEEEHHHHHHHHHHHH
Confidence              23459999999999987654

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.77  E-value=1.9e-18  Score=134.51  Aligned_cols=124  Identities=16%  Similarity=0.289  Sum_probs=104.4

Q ss_pred             hhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHH
Q 046022           25 LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDI  104 (262)
Q Consensus        25 l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Di  104 (262)
                      |.+.+|+|+|.  ++++++++++|+.+|++.|.++++.++||++.                       ++++|+++..|+
T Consensus         1 l~~~~V~d~m~--~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~-----------------------~~~~Givt~~dl   55 (127)
T d2ef7a1           1 MEEEIVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG-----------------------NKPVGIITERDI   55 (127)
T ss_dssp             CCCCBGGGTSB--CSCCEEETTCBHHHHHHHHHHHTCSEEEEEET-----------------------TEEEEEEEHHHH
T ss_pred             CCccCHHHhCC--CCCeEECCcCcHHHHHHHHHHcCCceEEeecc-----------------------cchhhhcchhHH
Confidence            45678999995  47899999999999999999999999999974                       589999999999


Q ss_pred             HHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccce
Q 046022          105 LAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVE  183 (262)
Q Consensus       105 l~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~  183 (262)
                      ++.+.....              ..+++.++|..   +  +.++.+++++.+|+++|. ++++++||+ ++.        
T Consensus        56 ~~~~~~~~~--------------~~~~v~~~~~~---~--~~~v~~~~~l~~~~~~m~~~~~~~l~Vv-d~~--------  107 (127)
T d2ef7a1          56 VKAIGKGKS--------------LETKAEEFMTA---S--LITIREDSPITGALALMRQFNIRHLPVV-DDK--------  107 (127)
T ss_dssp             HHHHHTTCC--------------TTCBGGGTSEE---C--CCCEETTSBHHHHHHHHHHHTCSEEEEE-CTT--------
T ss_pred             HHHHHhhcc--------------ccchhhhhhhh---h--ccccccccchhHHHHHHHHcCceEEEEE-eCC--------
Confidence            998885322              23578999973   3  577999999999999998 799999996 432        


Q ss_pred             ecccCCeeeEecHHHHHHHHHh
Q 046022          184 LVESASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       184 ~~~~~~~~giITqsDIir~L~~  205 (262)
                          ++.+|+||++||+++|.+
T Consensus       108 ----~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1         108 ----GNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             ----SCEEEEEEHHHHHHHHHH
T ss_pred             ----CeEEEEEEHHHHHHHHHh
Confidence                345699999999999875

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.76  E-value=1.6e-18  Score=137.61  Aligned_cols=125  Identities=15%  Similarity=0.275  Sum_probs=103.4

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      ++|+|+|.  ++++++++++|+.+|++.|.++++.++||++++                      ++++|+++..|+++.
T Consensus         3 m~v~dim~--~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~----------------------~~~~Giit~~di~~~   58 (142)
T d1pvma4           3 MRVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN----------------------GNDVGLLSERSIIKR   58 (142)
T ss_dssp             CBGGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT----------------------SCEEEEEEHHHHHHH
T ss_pred             EEHHHhCC--CCCcEECCcCcHHHHHHHHHHCCCceEeeeccC----------------------CcccceEEeechhhh
Confidence            57999995  467899999999999999999999999999865                      689999999999987


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      +.....            .....+++++|+.   +  +.++.++++|.+|+++|. ++++++||+ +++           
T Consensus        59 ~~~~~~------------~~~~~~v~~im~~---~--~~~v~~~~~l~~~~~~m~~~~~~~lpVv-d~~-----------  109 (142)
T d1pvma4          59 FIPRNK------------KPDEVPIRLVMRK---P--IPKVKSDYDVKDVAAYLSENGLERCAVV-DDP-----------  109 (142)
T ss_dssp             TGGGCC------------CGGGSBGGGTSBS---S--CCEEETTCBHHHHHHHHHHHTCSEEEEE-CTT-----------
T ss_pred             hhhhcc------------ccccccccccccc---c--cccccchhhHHHHHHHHHHcCCcEEEEE-ecC-----------
Confidence            764211            1224589999973   3  689999999999999998 799999996 432           


Q ss_pred             cCCeeeEecHHHHHHHHHhh
Q 046022          187 SASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~~~  206 (262)
                       |.++|+||+.||++++.+.
T Consensus       110 -g~l~Giit~~Dil~~l~~~  128 (142)
T d1pvma4         110 -GRVVGIVTLTDLSRYLSRA  128 (142)
T ss_dssp             -CCEEEEEEHHHHTTTSCHH
T ss_pred             -CEEEEEEEHHHHHHHHhhh
Confidence             2446999999999988653

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=2.5e-18  Score=136.09  Aligned_cols=136  Identities=12%  Similarity=0.173  Sum_probs=100.3

Q ss_pred             eeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHH
Q 046022           29 KVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHI  108 (262)
Q Consensus        29 ~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l  108 (262)
                      .+.++|.  .+.+++++++|+.+|++.|.++++.++||+|++                      ++++|+||..||+.++
T Consensus         5 ~v~~~m~--~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~----------------------~~~vGiis~~Dl~~~~   60 (145)
T d1o50a3           5 DVCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD----------------------NKLVGMIPVMHLLKVS   60 (145)
T ss_dssp             HHTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET----------------------TEEEEEEEHHHHHHHH
T ss_pred             EhHHhCC--CCCEEECCcCcHHHHHHHHHHcCCceEEEeccC----------------------cceeeeeccchhhhhh
Confidence            4666774  355799999999999999999999999999864                      6899999999999876


Q ss_pred             hCCC--CCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceec
Q 046022          109 AGDD--QMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELV  185 (262)
Q Consensus       109 ~~~~--~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~  185 (262)
                      ....  ..................+++++|.    +  ++++.+++++.+|+++|. ++++++||+ +++          
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~i~~~~~l~~a~~~m~~~~i~~lpVV-d~~----------  123 (145)
T d1o50a3          61 GFHFFGFIPKEELIRSSMKRLIAKNASEIML----D--PVYVHMDTPLEEALKLMIDNNIQEMPVV-DEK----------  123 (145)
T ss_dssp             HHHHHCCCC-------CCCCCSSCBHHHHCB----C--CCCBCTTSBHHHHHHHHHHHTCSEEEEE-CTT----------
T ss_pred             hcccccccchhHHHHhhhhhccccCHHHHcC----C--CEEEcCCCCHHHHHHHHHHcCceEEEEE-eCC----------
Confidence            6310  0000000000111223456777775    2  467999999999999998 799999996 322          


Q ss_pred             ccCCeeeEecHHHHHHHHHhhc
Q 046022          186 ESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       186 ~~~~~~giITqsDIir~L~~~~  207 (262)
                        |+++|+||++||+++|.+..
T Consensus       124 --g~i~Gvit~~dil~~l~~~~  143 (145)
T d1o50a3         124 --GEIVGDLNSLEILLALWKGR  143 (145)
T ss_dssp             --SCEEEEEEHHHHHHHHHHSC
T ss_pred             --CeEEEEEEHHHHHHHHHhcC
Confidence              34569999999999998753

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.74  E-value=2.3e-18  Score=135.61  Aligned_cols=131  Identities=15%  Similarity=0.202  Sum_probs=105.5

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      ++|+++|+.  +++++++++|+.+|++.|.++++.++||++.+                      ++++|+++..|++++
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~----------------------~~~~g~i~~~di~~~   57 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD----------------------NKVVGIVTVVNAIKQ   57 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTT----------------------SCEEEEEEHHHHHHH
T ss_pred             EeeHHhCcC--CCeEEcCcCcHHHHHHHHHHcCCCeeeccccc----------------------Cccccccccccchhh
Confidence            478999954  68899999999999999999999999999875                      689999999999988


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      +......       .........+++++|..   +  +.++.+++++.+|+++|. ++++++||+ |++           
T Consensus        58 ~~~~~~~-------~~~~~~~~~~v~~im~~---~--~~~v~~~~~~~~~~~~m~~~~~~~l~Vv-d~~-----------  113 (141)
T d3ddja1          58 LAKAVDK-------LDPDYFYGKVVKDVMVT---N--LVTIDELASVNRAAAEMIVKRIGSLLIL-NKD-----------  113 (141)
T ss_dssp             HHHHHHH-------TCTHHHHTCBHHHHSBC---C--CCBCCTTSBHHHHHHHHHHHTCSEEEEE-CTT-----------
T ss_pred             hhccccc-------cccccccCCCHHHHhCc---c--cccccccchhhHHHHHHHHcCCCEEEEE-ccC-----------
Confidence            7641100       01123346789999973   3  578999999999999998 799999996 432           


Q ss_pred             cCCeeeEecHHHHHHHHHhhc
Q 046022          187 SASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~~~~  207 (262)
                       ++.+|+||.+||++++....
T Consensus       114 -~~~iGiIt~~Dil~~l~~~~  133 (141)
T d3ddja1         114 -NTIRGIITERDLLIALHHIL  133 (141)
T ss_dssp             -SCEEEEEEHHHHHHHHHHHH
T ss_pred             -CEEEEEEEHHHHHHHHHHHH
Confidence             24469999999999997643

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.73  E-value=1.6e-17  Score=133.12  Aligned_cols=131  Identities=14%  Similarity=0.255  Sum_probs=101.8

Q ss_pred             eecccccc-CCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           29 KVRDLTAE-KRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        29 ~v~dlm~~-~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      ++++++.+ ..+++++.+++|+.+|++.|.+++++++||+|++                      ++++|+++..||+.+
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~----------------------~~~vG~it~~Dl~~~   59 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE----------------------GTLLNVYESVDVMHL   59 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGG----------------------GBEEEEEEHHHHHHH
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeeccc----------------------ceEEEEEEeeeeeeh
Confidence            56777754 3578999999999999999999999999999864                      689999999999988


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCC-CCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceec
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCP-EGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELV  185 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~-~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~  185 (262)
                      +.....            .....+++++|...+ ....+.++.++++|.++++.|. +++|++||+ +++          
T Consensus        60 ~~~~~~------------~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv-d~~----------  116 (153)
T d2ooxe2          60 IQDGDY------------SNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVV-DEN----------  116 (153)
T ss_dssp             HGGGCG------------GGGGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEE-CTT----------
T ss_pred             hccccc------------cccccchhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEE-cCC----------
Confidence            875221            122446677664211 0111578999999999999998 799999996 322          


Q ss_pred             ccCCeeeEecHHHHHHHHHhh
Q 046022          186 ESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       186 ~~~~~~giITqsDIir~L~~~  206 (262)
                        ++.+|+||++||++|+...
T Consensus       117 --~~lvGivT~~Dil~~~~~~  135 (153)
T d2ooxe2         117 --LKLEGILSLADILNYIIYD  135 (153)
T ss_dssp             --CBEEEEEEHHHHHHHHHSC
T ss_pred             --CEEEEEEEHHHHHHHHHcC
Confidence              3456999999999999753

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.73  E-value=1.7e-17  Score=132.48  Aligned_cols=138  Identities=14%  Similarity=0.222  Sum_probs=102.1

Q ss_pred             hcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHH
Q 046022           26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDIL  105 (262)
Q Consensus        26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil  105 (262)
                      .+.+|+|+|+  ++++++++++|+.+|+++|.++++.++||++..+                    .+.++|+++..|++
T Consensus         9 ~~~~V~diM~--~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~--------------------~~~lvg~is~~dl~   66 (160)
T d2d4za3           9 YNIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPD--------------------TNTLLGSIDRTEVE   66 (160)
T ss_dssp             SSCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTT--------------------TCBEEEEEEHHHHH
T ss_pred             cceEHHHhcC--CCCeEECCCCcHHHHHHHHHhcCCCccccccccc--------------------cccccccchHHHHH
Confidence            3679999996  4789999999999999999999999999998642                    26899999999999


Q ss_pred             HHHhCC--CCCCC-CCCCc--chHH-------hhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeec
Q 046022          106 AHIAGD--DQMNG-SDDAP--DDLD-------KKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPM  172 (262)
Q Consensus       106 ~~l~~~--~~l~~-~~~~~--~~~~-------~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~  172 (262)
                      ..+...  ..... .+...  ....       ......+.++|..   .  +.++.++++|.+|+++|. .|++++||+.
T Consensus        67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~tv~~~~~l~~~~~~m~~~~v~~l~V~d  141 (160)
T d2d4za3          67 GLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQ---S--PFQLVEGTSLQKTHTLFSLLGLDRAYVTS  141 (160)
T ss_dssp             HHHHHHHHTTSSSCCCSCCBHHHHHHHHHHHTTCBCCTTSSCEEC---C--SCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             HHHhhccccccccchhhccccchhhhhhhhhcccccceeeecccC---C--CEEEcCCCCHHHHHHHHHHcCCeEEEEEE
Confidence            877641  00000 00000  0000       1123456667762   2  578999999999999998 6999999963


Q ss_pred             CCCCcccccceecccCCeeeEecHHHHHHHHH
Q 046022          173 DSRMENISGVELVESASSYQMLTQMDLLRFMM  204 (262)
Q Consensus       173 ~~~~~~~~g~~~~~~~~~~giITqsDIir~L~  204 (262)
                      +              |+++||||++||++.+.
T Consensus       142 ~--------------g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3         142 M--------------GKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             T--------------TEEEEEEEHHHHHHHHH
T ss_pred             C--------------CEEEEEEEHHHHHHHhC
Confidence            2              23459999999999874

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.72  E-value=1.1e-17  Score=129.03  Aligned_cols=118  Identities=25%  Similarity=0.348  Sum_probs=98.4

Q ss_pred             eeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHH
Q 046022           29 KVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHI  108 (262)
Q Consensus        29 ~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l  108 (262)
                      +|+|+|.  ++++++++++|+.+|++.|.++++.++||.+.                       ++++|+||..||++++
T Consensus         1 kV~diM~--~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~-----------------------~~~~Gvit~~Di~~~l   55 (120)
T d1pbja3           1 RVEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVKE-----------------------GVRVGIVTTWDVLEAI   55 (120)
T ss_dssp             CHHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEET-----------------------TEEEEEEEHHHHHHHH
T ss_pred             ChHHhCC--CCCeEECCcCcHHHHHHHHHHcCceEEEEEeC-----------------------CcEEEEEEeeeccccc
Confidence            4789995  47789999999999999999999999999874                       5899999999999988


Q ss_pred             hCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceeccc
Q 046022          109 AGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVES  187 (262)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~  187 (262)
                      .....+             ...++.++|..   +  +.++++++++.+|++.|. ++++++||. ++             
T Consensus        56 ~~~~~~-------------~~~~v~~~m~~---~--~~~v~~~~~l~~a~~~m~~~~~~~l~V~-~~-------------  103 (120)
T d1pbja3          56 AEGDDL-------------AEVKVWEVMER---D--LVTISPRATIKEAAEKMVKNVVWRLLVE-ED-------------  103 (120)
T ss_dssp             HHTCCT-------------TTSBHHHHCBC---G--GGEECTTSCHHHHHHHHHHHTCSEEEEE-ET-------------
T ss_pred             cccccc-------------cceeEeeeccc---c--cccccchhHHHHHHHHHHHcCCeEEEEE-EC-------------
Confidence            853321             24589999973   3  578999999999999998 799999995 32             


Q ss_pred             CCeeeEecHHHHHHHH
Q 046022          188 ASSYQMLTQMDLLRFM  203 (262)
Q Consensus       188 ~~~~giITqsDIir~L  203 (262)
                      ++.+|+||++||+|..
T Consensus       104 ~~l~Givt~~Dil~A~  119 (120)
T d1pbja3         104 DEIIGVISATDILRAK  119 (120)
T ss_dssp             TEEEEEEEHHHHHHHH
T ss_pred             CEEEEEEEHHHHHhcC
Confidence            2345999999999864

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2.7e-17  Score=129.68  Aligned_cols=134  Identities=19%  Similarity=0.281  Sum_probs=96.6

Q ss_pred             hhcceeccc-cccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022           25 LREAKVRDL-TAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD  103 (262)
Q Consensus        25 l~~~~v~dl-m~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D  103 (262)
                      +...+++|+ +....+++++.+++|+.+|++.|.+++++++||+|++                      ++++|+|+..|
T Consensus         3 ~~~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~----------------------~~~vG~it~~D   60 (140)
T d2nyca1           3 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN----------------------GYLINVYEAYD   60 (140)
T ss_dssp             GGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT----------------------CBEEEEEEHHH
T ss_pred             cccCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC----------------------CeEcceehhhH
Confidence            345677877 2345789999999999999999999999999999975                      58999999999


Q ss_pred             HHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          104 ILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       104 il~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      +++++.......    ........+  .....+.   ..  ++++.+++++.+|++.|. +++|++||+ |+.       
T Consensus        61 i~~~~~~~~~~~----~~~~~~~~~--~~~~~~~---~~--~~~v~~~~~l~~~~~~~~~~~~~~l~VV-d~~-------  121 (140)
T d2nyca1          61 VLGLIKGGIYND----LSLSVGEAL--MRRSDDF---EG--VYTCTKNDKLSTIMDNIRKARVHRFFVV-DDV-------  121 (140)
T ss_dssp             HHHHHHTC--------CCSBHHHHH--HHCC-----------CEECTTSBHHHHHHHHHHHTCSEEEEE-CTT-------
T ss_pred             HHHHHhhccccc----cccchhhhh--hhhhhcc---cc--cEEECCCCcHHHHHHHHHhcCeeEEEEE-eCC-------
Confidence            999987532110    000111111  0111221   12  578999999999999998 799999996 322       


Q ss_pred             eecccCCeeeEecHHHHHHHHH
Q 046022          183 ELVESASSYQMLTQMDLLRFMM  204 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIir~L~  204 (262)
                           ++.+|+||++||++|+.
T Consensus       122 -----~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1         122 -----GRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             -----SBEEEEEEHHHHHHHHH
T ss_pred             -----CeEEEEEEHHHHHHHHh
Confidence                 34569999999999985

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2e-17  Score=134.49  Aligned_cols=142  Identities=14%  Similarity=0.252  Sum_probs=103.2

Q ss_pred             cceeccccccC---CcE-EEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHH
Q 046022           27 EAKVRDLTAEK---RRI-VEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTML  102 (262)
Q Consensus        27 ~~~v~dlm~~~---~~l-v~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~  102 (262)
                      .+.++|+|...   +++ +.+.++.|+.+|+++|.+++++++||+++++                    .++++|+|+..
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~--------------------~~~lvG~is~~   61 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE--------------------SQRLVGFVLRR   61 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT--------------------TCBEEEEEEHH
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCC--------------------CCeEEEEEEhH
Confidence            45689999532   232 4566788999999999999999999996532                    26899999999


Q ss_pred             HHHHHHhCC----CCCCC-------CCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEe
Q 046022          103 DILAHIAGD----DQMNG-------SDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALV  170 (262)
Q Consensus       103 Dil~~l~~~----~~l~~-------~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V  170 (262)
                      ||+.++...    .....       ..............+|+++|..   .  ++++.++++|.+++++|. .+++++||
T Consensus        62 dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~---~--~~tv~~~~~l~~v~~~~~~~~~~~l~V  136 (169)
T d2j9la1          62 DLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDL---S--PFTVTDLTPMEIVVDIFRKLGLRQCLV  136 (169)
T ss_dssp             HHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGGEES---S--CCEEETTSBHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHhcccccccccccchhhhhcccchhhhhccccccchhhhccC---C--CEEECCCCcHHHHHHHHHhcCceEEEE
Confidence            999887531    11100       0000111122335679999983   3  579999999999999998 69999999


Q ss_pred             ecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          171 PMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       171 ~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      . ++             |+++||||++||+||+.+..
T Consensus       137 ~-d~-------------g~lvGiIt~~Dil~~l~~~~  159 (169)
T d2j9la1         137 T-HN-------------GRLLGIITKKDVLKHIAQMA  159 (169)
T ss_dssp             E-ET-------------TEEEEEEEHHHHHHHHHHHC
T ss_pred             E-EC-------------CEEEEEEEHHHHHHHHHHHh
Confidence            5 32             23459999999999998754

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.70  E-value=2e-17  Score=129.38  Aligned_cols=131  Identities=13%  Similarity=0.184  Sum_probs=102.3

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      ++|+|+|.+  +++++++++|+.+|++.|.++++.++||+|                        ++++|+++..|++.+
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d------------------------~~lvg~~~~~~~~~~   54 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVAN------------------------EKIEGLLTTRDLLST   54 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEES------------------------SSEEEEEEHHHHHGG
T ss_pred             CEeeEEeeC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEe------------------------cceeceeeccchhhh
Confidence            478999975  455899999999999999999999999986                        369999999999988


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      +.......   ............+++++|..   +  +.++.+++++.+|+++|. ++++++||+ |++           
T Consensus        55 ~~~~~~~~---~~~~~~~~~~~~~v~~im~~---~--~~~v~~~~~l~~a~~~m~~~~i~~lpVv-d~~-----------  114 (135)
T d3ddja2          55 VESYCKDS---CSQGDLYHISTTPIIDYMTP---N--PVTVYNTSDEFTAINIMVTRNFGSLPVV-DIN-----------  114 (135)
T ss_dssp             GTTCC------CCHHHHHHHHTSBGGGTSEE---S--CCCEETTSCHHHHHHHHHHHTCSEEEEE-CTT-----------
T ss_pred             hccccccc---hhhhhccccccCCHHHHhCC---c--cceEEeccccchhhhhhhhcceeEEEEE-eCC-----------
Confidence            87532110   00111223347799999973   3  578999999999999998 799999996 432           


Q ss_pred             cCCeeeEecHHHHHHHHHh
Q 046022          187 SASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~~  205 (262)
                       |+.+|+||++||++++.+
T Consensus       115 -g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2         115 -DKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             -SCEEEEEEHHHHGGGGGG
T ss_pred             -CEEEEEEEHHHHHHHHHH
Confidence             345699999999998754

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=2.7e-17  Score=130.26  Aligned_cols=133  Identities=17%  Similarity=0.212  Sum_probs=98.8

Q ss_pred             ceecccccc-CCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022           28 AKVRDLTAE-KRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA  106 (262)
Q Consensus        28 ~~v~dlm~~-~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~  106 (262)
                      .+++|++.+ .++++++.+++|+.+|++.|.+++++++||++++                      ++++|+|+..|++.
T Consensus         9 ~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~----------------------~~~~Gvit~~di~~   66 (145)
T d2v8qe1           9 KSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK----------------------GRVVDIYSKFDVIN   66 (145)
T ss_dssp             SBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT----------------------SBEEEEEEGGGTGG
T ss_pred             CCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccC----------------------CceEEEEEcchhhh
Confidence            478888654 2578999999999999999999999999999865                      68999999999988


Q ss_pred             HHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceec
Q 046022          107 HIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELV  185 (262)
Q Consensus       107 ~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~  185 (262)
                      ++.......    ........  ..+...|.   .+  +.++.+++++.+++++|. +++|++||+ +++          
T Consensus        67 ~l~~~~~~~----~~~~v~~~--~~~~~~~~---~~--~~~v~~~~~l~~~~~~m~~~~~~~l~Vv-d~~----------  124 (145)
T d2v8qe1          67 LAAEKTYNN----LDVSVTKA--LQHRSHYF---EG--VLKCYLHETLEAIINRLVEAEVHRLVVV-DEH----------  124 (145)
T ss_dssp             GGGSSCCCC----CSSBHHHH--GGGCCSCC---CS--CCEECTTSBHHHHHHHHHHHTCSEEEEE-CTT----------
T ss_pred             hhhcccccc----hhhhhhhc--cchhhhcc---CC--CeEECCCCcHHHHHHHHHHcCceEEEEE-ccC----------
Confidence            877532110    00001110  11222332   12  578999999999999998 799999996 422          


Q ss_pred             ccCCeeeEecHHHHHHHHHhh
Q 046022          186 ESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       186 ~~~~~~giITqsDIir~L~~~  206 (262)
                        ++++|+||++||++||...
T Consensus       125 --g~l~GiVt~~dii~~lv~~  143 (145)
T d2v8qe1         125 --DVVKGIVSLSDILQALVLT  143 (145)
T ss_dssp             --SBEEEEEEHHHHHHHHHSS
T ss_pred             --CEEEEEEEHHHHHHHHHhc
Confidence              3456999999999999754

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.69  E-value=8.2e-17  Score=125.27  Aligned_cols=123  Identities=20%  Similarity=0.216  Sum_probs=96.4

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      ++|+|+|.  ++++++++++|+.+|++.|.++++.++||++.+.                    .++++|+++..|++.+
T Consensus         1 ~~V~dim~--~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~--------------------~~~~iGi~~~~dl~~~   58 (131)
T d2riha1           1 IRTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARDN--------------------PKRPVAVVSERDILRA   58 (131)
T ss_dssp             CBGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE--------------------EEEEEEEEEHHHHHHH
T ss_pred             CCHHHhcc--CCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcC--------------------CCEEEEEEeeeccccc
Confidence            47999995  4668999999999999999999999999996432                    2689999999999998


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      +......              ...+...+.    .  ..++.+++++.+|+++|. ++++++||+ +++           
T Consensus        59 ~~~~~~~--------------~~~~~~~~~----~--~~~v~~~~~~~~a~~~m~~~~i~~lpVv-d~~-----------  106 (131)
T d2riha1          59 VAQRLDL--------------DGPAMPIAN----S--PITVLDTDPVHVAAEKMRRHNIRHVVVV-NKN-----------  106 (131)
T ss_dssp             HHTTCCT--------------TSBSGGGCB----C--CCEEETTSBHHHHHHHHHHHTCSEEEEE-CTT-----------
T ss_pred             ccccccc--------------ccccccccc----c--ceeEeeecchHHHHHHHHHCCeEEEEEE-cCC-----------
Confidence            8763211              112233332    2  467999999999999998 799999996 322           


Q ss_pred             cCCeeeEecHHHHHHHHHh
Q 046022          187 SASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~~  205 (262)
                       |+.+|+||++||++++..
T Consensus       107 -g~l~Giit~~Dll~~~~~  124 (131)
T d2riha1         107 -GELVGVLSIRDLCFERAI  124 (131)
T ss_dssp             -SCEEEEEEHHHHHSCHHH
T ss_pred             -CeEEEEEEHHHHHHHHHH
Confidence             345699999999997654

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.68  E-value=3.6e-17  Score=127.51  Aligned_cols=117  Identities=12%  Similarity=0.207  Sum_probs=96.7

Q ss_pred             eeccccccCCcEEEEcCCCCHHHHHHHHHhC-----CCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022           29 KVRDLTAEKRRIVEVPHTASLAHTMNALVAN-----KVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD  103 (262)
Q Consensus        29 ~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~-----~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D  103 (262)
                      |++.||.  ++++++++++|+.+|++.|.++     ++..+||+|++                      ++++|+++..|
T Consensus         2 taG~iM~--~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~----------------------~~l~G~v~~~~   57 (127)
T d2ouxa2           2 TAGAIMT--TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE----------------------NHLVGVISLRD   57 (127)
T ss_dssp             BHHHHCB--SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT----------------------CBEEEEEEHHH
T ss_pred             ChhHhCC--CCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecC----------------------CeEEEEEEeec
Confidence            6789995  4789999999999999999877     47899999975                      68999999998


Q ss_pred             HHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          104 ILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       104 il~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      ++..-                   ...+|.++|..   +  +.++.+++++.+|+++|. ++++++||+ |++       
T Consensus        58 l~~~~-------------------~~~~v~~im~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lPVV-D~~-------  105 (127)
T d2ouxa2          58 LIVND-------------------DDTLIADILNE---R--VISVHVGDDQEDVAQTIRDYDFLAVPVT-DYD-------  105 (127)
T ss_dssp             HTTSC-------------------TTSBHHHHSBS---C--CCCEETTSBHHHHHHHHHHHTCSEEEEE-CTT-------
T ss_pred             ccccc-------------------ccEEhhhhccC---C--CccCCCCCCHHHHHHHHHHhCCEEEEEE-eCC-------
Confidence            65321                   13579999983   3  578999999999999998 799999996 432       


Q ss_pred             eecccCCeeeEecHHHHHHHHHhh
Q 046022          183 ELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIir~L~~~  206 (262)
                           |+++|+||..||++++.+.
T Consensus       106 -----g~lvGiIt~~Dil~~i~ee  124 (127)
T d2ouxa2         106 -----DHLLGIVTVDDIIDVIDDE  124 (127)
T ss_dssp             -----CBEEEEEEHHHHHHHHHHH
T ss_pred             -----CEEEEEEEHHHHHHHHHHH
Confidence                 3446999999999998664

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.68  E-value=8.8e-18  Score=129.97  Aligned_cols=118  Identities=16%  Similarity=0.281  Sum_probs=80.7

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      ++|+|+|..  +++++++++|+.+|+++|.++++.++||+|++                      ++++|+|+..|++..
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~----------------------~~~~G~it~~dl~~~   56 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKE----------------------GKLVGIISVKRILVN   56 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC------------CCEEEEECTT----------------------CCEEEEEESSCC---
T ss_pred             CCcccccCC--CCEEECCcCcHHHHHHHHHHcCCcEEEEEecc----------------------ccchhhhhcchhhhh
Confidence            478999964  57799999999999999999999999999875                      699999999997754


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      ..                   ..++.++|..   +  +.++.+++++.+|+++|. ++++++||+ |++           
T Consensus        57 ~~-------------------~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~lpVv-d~~-----------  100 (122)
T d2yzqa2          57 PD-------------------EEQLAMLVKR---D--VPVVKENDTLKKAAKLMLEYDYRRVVVV-DSK-----------  100 (122)
T ss_dssp             --------------------------CCCBS---C--CCEEETTSBHHHHHHHHHHHTCSEEEEE-CTT-----------
T ss_pred             hc-------------------ccchhhcccc---c--eeecchhhHHHHHHHHHHHcCcEEEEEE-eCC-----------
Confidence            22                   2368888873   3  578999999999999998 799999996 432           


Q ss_pred             cCCeeeEecHHHHHHHHHhh
Q 046022          187 SASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~~~  206 (262)
                       ++.+|+||.+||++.+..+
T Consensus       101 -~~liGiit~~dil~~~~~~  119 (122)
T d2yzqa2         101 -GKPVGILTVGDIIRRYFAK  119 (122)
T ss_dssp             -SCEEEEEEHHHHHHHTTTT
T ss_pred             -CEEEEEEEHHHHHHHHHhH
Confidence             3456999999999876554

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=3.9e-17  Score=129.99  Aligned_cols=118  Identities=14%  Similarity=0.165  Sum_probs=97.6

Q ss_pred             eeccccccCCcEEEEcCCCCHHHHHHHHHhC-----CCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022           29 KVRDLTAEKRRIVEVPHTASLAHTMNALVAN-----KVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD  103 (262)
Q Consensus        29 ~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~-----~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D  103 (262)
                      +++.||.  ++++++++++|+.+|++.|.++     ++.++||+|++                      ++++|+++..|
T Consensus         2 taG~iM~--~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~----------------------~~l~G~v~~~d   57 (144)
T d2yvxa2           2 EAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK----------------------GRLKGVLSLRD   57 (144)
T ss_dssp             SSGGGCB--SCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTT----------------------CBBCCBCBHHH
T ss_pred             CcccccC--CCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCC----------------------CCEecccchhh
Confidence            6899995  4789999999999999999887     47899999975                      69999999999


Q ss_pred             HHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022          104 ILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV  182 (262)
Q Consensus       104 il~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~  182 (262)
                      ++...                   ...++.++|..   +  ++++.|++++.+|++.|. ++++++||+ +++       
T Consensus        58 l~~~~-------------------~~~~v~~im~~---~--~~~v~~~~~~~~a~~~m~~~~~~~lPVV-d~~-------  105 (144)
T d2yvxa2          58 LIVAD-------------------PRTRVAEIMNP---K--VVYVRTDTDQEEVARLMADYDFTVLPVV-DEE-------  105 (144)
T ss_dssp             HTTSC-------------------TTCBSTTTSBS---S--CCCEESSCCHHHHHHHHHHSCCSEEEEE-CSS-------
T ss_pred             hhhcc-------------------cccchHHhccc---C--CccCCCCChHHHHHHHHHHcCCCEEEEE-eEC-------
Confidence            75421                   12478999983   3  578999999999999998 799999996 432       


Q ss_pred             eecccCCeeeEecHHHHHHHHHhhc
Q 046022          183 ELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       183 ~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                           |+++|+||..||++++.+..
T Consensus       106 -----g~lvGiIt~~Dil~~l~~e~  125 (144)
T d2yvxa2         106 -----GRLVGIVTVDDVLDVLEAEA  125 (144)
T ss_dssp             -----CBEEEEEEHHHHHHHHHHHH
T ss_pred             -----CEEEEEEEHHHHHHHHHHHh
Confidence                 34469999999999997754

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.64  E-value=6e-16  Score=119.99  Aligned_cols=111  Identities=14%  Similarity=0.197  Sum_probs=86.7

Q ss_pred             EEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCCC
Q 046022           40 IVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDD  119 (262)
Q Consensus        40 lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~~  119 (262)
                      ++++++++|+.+|+++|.+++++++||+|+.+                    .++++|+||..||+......        
T Consensus         7 pvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~--------------------~~~lvGivt~~Di~~~~~~~--------   58 (126)
T d1zfja4           7 PFFLTPEHKVSEAEELMQRYRISGVPIVETLA--------------------NRKLVGIITNRDMRFISDYN--------   58 (126)
T ss_dssp             CCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT--------------------TCBEEEEEEHHHHHHCSCSS--------
T ss_pred             ceEECCCCCHHHHHHHHHHhCCCcEEEEeecc--------------------CCeEEEEeEHHHHHHhhccC--------
Confidence            46999999999999999999999999998632                    26899999999987643321        


Q ss_pred             CcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHH
Q 046022          120 APDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMD  198 (262)
Q Consensus       120 ~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsD  198 (262)
                                .++...|..  ..  ++++.+++++.+|+++|. ++++++||+ ++.            ++.+||||++|
T Consensus        59 ----------~~~~~~~~~--~~--~~~~~~~~~l~~a~~~m~~~~~~~lpVV-d~~------------g~lvGiiT~~D  111 (126)
T d1zfja4          59 ----------APISEHMTS--EH--LVTAAVGTDLETAERILHEHRIEKLPLV-DNS------------GRLSGLITIKD  111 (126)
T ss_dssp             ----------SBTTTSCCC--SC--CCCEETTCCHHHHHHHHHHTTCSEEEEE-CTT------------SBEEEEEEHHH
T ss_pred             ----------Cceeeeeec--cc--eeecCCCCCHHHHHHHHHhcCCcEEEEE-cCC------------CeEEEEEEHHH
Confidence                      133344431  23  577899999999999998 799999996 322            34469999999


Q ss_pred             HHHHHHh
Q 046022          199 LLRFMMN  205 (262)
Q Consensus       199 Iir~L~~  205 (262)
                      |++++..
T Consensus       112 il~~~~~  118 (126)
T d1zfja4         112 IEKVIEF  118 (126)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhhC
Confidence            9998753

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=3.4e-16  Score=120.61  Aligned_cols=118  Identities=14%  Similarity=0.152  Sum_probs=97.9

Q ss_pred             ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022           28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH  107 (262)
Q Consensus        28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~  107 (262)
                      ++|+++|.  +++.++++++|+.+|++.|.+++..++||+|++                      ++++|+++..|++++
T Consensus         1 m~v~~~m~--~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~----------------------~~~~Gii~~~dl~~~   56 (121)
T d1vr9a3           1 MKVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDRE----------------------GHFRGVVNKEDLLDL   56 (121)
T ss_dssp             CBGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT----------------------SBEEEEEEGGGGTTS
T ss_pred             CCchhhhc--CCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCC----------------------ceeEEEeehhhhhhh
Confidence            47899995  467799999999999999999999999999865                      689999999998643


Q ss_pred             HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022          108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE  186 (262)
Q Consensus       108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~  186 (262)
                      ..                   ..++.++|..   +  ++++.+++++.++++.|. +++.++||+ +++           
T Consensus        57 ~~-------------------~~~v~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~lpVv-de~-----------  100 (121)
T d1vr9a3          57 DL-------------------DSSVFNKVSL---P--DFFVHEEDNITHALLLFLEHQEPYLPVV-DEE-----------  100 (121)
T ss_dssp             CT-------------------TSBSGGGCBC---T--TCCEETTSBHHHHHHHHHHCCCSEEEEE-CTT-----------
T ss_pred             hc-------------------cccccccccC---c--cEEECCCCCHHHHHHHHHhcCceeeeeE-CCC-----------
Confidence            11                   2478999973   3  467899999999999988 789999996 332           


Q ss_pred             cCCeeeEecHHHHHHHHHhh
Q 046022          187 SASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       187 ~~~~~giITqsDIir~L~~~  206 (262)
                       ++.+|+||..||++++.+.
T Consensus       101 -g~~~Gvit~~dil~~l~~~  119 (121)
T d1vr9a3         101 -MRLKGAVSLHDFLEALIEA  119 (121)
T ss_dssp             -CBEEEEEEHHHHHHHHHHS
T ss_pred             -CeEEEEEEHHHHHHHHHHh
Confidence             3456999999999998764

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.54  E-value=1.4e-16  Score=122.83  Aligned_cols=112  Identities=11%  Similarity=0.160  Sum_probs=51.4

Q ss_pred             EEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCCC
Q 046022           40 IVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDD  119 (262)
Q Consensus        40 lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~~  119 (262)
                      ++++++++|+.+|+++|.+++++++||+++..                   ..++++|+||.+|+......         
T Consensus         6 pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~-------------------~~~~lvGivT~~Di~~~~~~---------   57 (120)
T d1jr1a4           6 PVVLSPKDRVRDVFEAKARHGFCGIPITDTGR-------------------MGSRLVGIISSRDIDFLKEE---------   57 (120)
T ss_dssp             TCC----CCCC--CCBC----------------------------------CTTCCC-----------------------
T ss_pred             CEEECCcCCHHHHHHHHHHhCCCeEEEeeccc-------------------cCCeEeeeeeeeeeeehhcc---------
Confidence            36999999999999999999999999998531                   02689999999997532221         


Q ss_pred             CcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHH
Q 046022          120 APDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMD  198 (262)
Q Consensus       120 ~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsD  198 (262)
                             ....++..+|... ..  +.++.+++++.+|+++|. ++++++||+.++             ++++||||++|
T Consensus        58 -------~~~~~~~~~~~~~-~~--~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~-------------~~lvGiiT~~D  114 (120)
T d1jr1a4          58 -------EHDRFLEEIMTKR-ED--LVVAPAGITLKEANEILQRSKKGKLPIVNEN-------------DELVAIIARTD  114 (120)
T ss_dssp             ---------------CCSBT-TT--SCCEETTCCHHHHHHHTCSCC---CEEEETT-------------TEEEEEECHHH
T ss_pred             -------ccCceeEEEEeec-cC--ceEECCCCCHHHHHHHHHHcCccEEEEEcCC-------------CEEEEEEEHHH
Confidence                   1123566666522 23  578999999999999998 699999996332             23469999999


Q ss_pred             HHHH
Q 046022          199 LLRF  202 (262)
Q Consensus       199 Iir~  202 (262)
                      |+|.
T Consensus       115 i~k~  118 (120)
T d1jr1a4         115 LKKN  118 (120)
T ss_dssp             HHHH
T ss_pred             hhhc
Confidence            9985

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.51  E-value=5.2e-14  Score=111.08  Aligned_cols=108  Identities=15%  Similarity=0.273  Sum_probs=89.1

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      -+|+++|+.   +  +.++.+++++.+|++.|. ++++++||. +++            ++.+|+||.+|+++++.....
T Consensus         3 m~v~dim~~---~--~~~v~~~~tl~~a~~~m~~~~~~~~~V~-d~~------------~~~~Giit~~di~~~~~~~~~   64 (142)
T d1pvma4           3 MRVEKIMNS---N--FKTVNWNTTVFDAVKIMNENHLYGLVVK-DDN------------GNDVGLLSERSIIKRFIPRNK   64 (142)
T ss_dssp             CBGGGTSBT---T--CCEEETTCBHHHHHHHHHHHTCCEEEEE-CTT------------SCEEEEEEHHHHHHHTGGGCC
T ss_pred             EEHHHhCCC---C--CcEECCcCcHHHHHHHHHHCCCceEeee-ccC------------CcccceEEeechhhhhhhhcc
Confidence            368999973   3  689999999999999998 799999995 432            345699999999987765422


Q ss_pred             cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          209 ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       209 ~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      .   ....++++  +|+++++++++++++.+|+++|.+++++++||||++|.
T Consensus        65 ~---~~~~~v~~--im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~  111 (142)
T d1pvma4          65 K---PDEVPIRL--VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGR  111 (142)
T ss_dssp             C---GGGSBGGG--TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCC
T ss_pred             c---cccccccc--ccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCE
Confidence            1   12346777  48999999999999999999999999999999998874

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.50  E-value=6.1e-14  Score=109.26  Aligned_cols=105  Identities=13%  Similarity=0.238  Sum_probs=87.8

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..||+++|+.   +  +.++++++++.+|++.|. ++++++||+ +++            +...|+||..||++++..+.
T Consensus         4 ~~pV~~im~~---~--~~~v~~~~t~~~a~~~m~~~~~~~~~Vv-d~~------------~~~~Giit~~di~~~~~~~~   65 (132)
T d2yzia1           4 KAPIKVYMTK---K--LLGVKPSTSVQEASRLMMEFDVGSLVVI-NDD------------GNVVGFFTKSDIIRRVIVPG   65 (132)
T ss_dssp             TSBGGGTCBC---C--CCEECTTSBHHHHHHHHHHHTCSEEEEE-CTT------------SCEEEEEEHHHHHHHTTTTC
T ss_pred             CCcHHHHcCC---C--CeEECCcCcHHHHHHHHHHcCCcEEEEe-ccc------------ceeeeeeeHHHHHHHHhhcc
Confidence            4699999973   3  789999999999999998 799999996 432            23469999999999887653


Q ss_pred             ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      ..    .+.++++  +|++++.++++++++.+|+++|.+++++++||+++
T Consensus        66 ~~----~~~~v~~--im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~  109 (132)
T d2yzia1          66 LP----YDIPVER--IMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEE  109 (132)
T ss_dssp             CC----TTSBGGG--TCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred             Cc----cceeEee--cccccccccCcchHHHHHHHHHHHcCCCEEEEEEC
Confidence            21    2467887  48899999999999999999999999999998764

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.50  E-value=3.3e-14  Score=111.33  Aligned_cols=110  Identities=14%  Similarity=0.223  Sum_probs=92.1

Q ss_pred             ccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc
Q 046022          131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE  209 (262)
Q Consensus       131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~  209 (262)
                      ||+++|+.   +  ++++.+++|+.+|+++|. ++++++||. +++            +..+|++|..|+++++......
T Consensus         3 ~V~~iMt~---~--v~~v~~~~tl~~a~~~m~~~~~~~ipVv-~~~------------~~~~g~i~~~di~~~~~~~~~~   64 (141)
T d3ddja1           3 PVKVFMST---K--VQTIYKEVRLDQAVKLMLRRGFRRLPVI-DDD------------NKVVGIVTVVNAIKQLAKAVDK   64 (141)
T ss_dssp             BHHHHSBC---S--CCCEETTSBHHHHHHHHHHHTCSEEEEE-CTT------------SCEEEEEEHHHHHHHHHHHHHH
T ss_pred             eeHHhCcC---C--CeEEcCcCcHHHHHHHHHHcCCCeeecc-ccc------------Cccccccccccchhhhhccccc
Confidence            79999983   3  688999999999999998 799999995 432            2346999999999998765432


Q ss_pred             --chhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          210 --LKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       210 --l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                        ......+++++  +|+++++++.+++++.+|+++|.+++++++||||++|.
T Consensus        65 ~~~~~~~~~~v~~--im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~  115 (141)
T d3ddja1          65 LDPDYFYGKVVKD--VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNT  115 (141)
T ss_dssp             TCTHHHHTCBHHH--HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred             cccccccCCCHHH--HhCcccccccccchhhHHHHHHHHcCCCEEEEEccCCE
Confidence              23345677887  48999999999999999999999999999999998874

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.48  E-value=6.9e-14  Score=109.83  Aligned_cols=108  Identities=14%  Similarity=0.186  Sum_probs=87.7

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      .+|+++|+.   +  +.++.+++++.+|+++|. ++++++||+ +++            ++.+|+||..|+++++.....
T Consensus         2 i~v~diM~~---~--~~~v~~~~tl~~a~~~m~~~~~~~lpVv-d~~------------~~~~Giit~~dl~~~~~~~~~   63 (139)
T d2o16a3           2 IKVEDMMTR---H--PHTLLRTHTLNDAKHLMEALDIRHVPIV-DAN------------KKLLGIVSQRDLLAAQESSLQ   63 (139)
T ss_dssp             CBGGGTSEE---S--CCCBCTTSBHHHHHHHHHHHTCSEEEEE-CTT------------CBEEEEEEHHHHHHHHHHHCC
T ss_pred             EEHHHhCcC---C--CeEECCcCCHHHHHHHHHHcCCCeeeee-ccc------------ccccccccHHHHHHHHHhhhh
Confidence            368999973   3  578999999999999999 799999996 432            244699999999999987643


Q ss_pred             cch----hhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          209 ELK----DITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       209 ~l~----~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      ...    .....++++  +|+++++++++++++.+|+++|.+++++++||+|+
T Consensus        64 ~~~~~~~~~~~~~v~~--im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  114 (139)
T d2o16a3          64 RSAQGDSLAFETPLFE--VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK  114 (139)
T ss_dssp             ---------CCCBHHH--HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET
T ss_pred             hhhcccccccccchhH--hhccccccccccchHHHHHHHHHHcCceEEEEEEC
Confidence            221    123456777  48999999999999999999999999999999986

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.46  E-value=5.8e-14  Score=108.70  Aligned_cols=107  Identities=15%  Similarity=0.254  Sum_probs=86.6

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      .+|+++|....++  ++++.|++++.+|+++|. ++++++||..+ +             +++|+||..||++.+..+..
T Consensus         2 ~tV~dim~~k~~~--v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~-~-------------~~vGiit~~Di~~~~~~~~~   65 (127)
T d2rc3a1           2 KTVKHLLQEKGHT--VVAIGPDDSVFNAMQKMAADNIGALLVMKD-E-------------KLVGILTERDFSRKSYLLDK   65 (127)
T ss_dssp             CBHHHHHHHHCCC--CCEECTTSBHHHHHHHHHHHTCSEEEEEET-T-------------EEEEEEEHHHHHHHGGGSSS
T ss_pred             ccHHHHHccCCCc--cEEECCcCcHHHHHHHHHHcCCCEEEEEEC-C-------------eEEEEEEccchhhhhhhhcc
Confidence            3688999732223  789999999999999998 79999999632 1             34599999999987654322


Q ss_pred             cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          209 ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       209 ~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                         ...+.++++  +|++++.++.+++++.+|+++|.+++++.+||+|+
T Consensus        66 ---~~~~~~v~~--im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  109 (127)
T d2rc3a1          66 ---PVKDTQVKE--IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDD  109 (127)
T ss_dssp             ---CGGGSBGGG--TSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             ---cccceeEee--eccceeEEeccCccHHHHHHHHHHCCCcEEEEEEC
Confidence               223457777  58999999999999999999999999999999984

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.46  E-value=3.5e-14  Score=109.27  Aligned_cols=105  Identities=10%  Similarity=0.218  Sum_probs=84.9

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      ++++++|..   +  +.++.+++++.+|+++|. ++++++||+ +++            ++.+|+||..||++++..+..
T Consensus         1 tt~~diM~~---~--~~~v~~~~tl~~a~~~m~~~~~~~~pVv-d~~------------~~~~Giit~~Di~~~~~~~~~   62 (123)
T d1y5ha3           1 TTARDIMNA---G--VTCVGEHETLTAAAQYMREHDIGALPIC-GDD------------DRLHGMLTDRDIVIKGLAAGL   62 (123)
T ss_dssp             CCHHHHSEE---T--CCCEETTSBHHHHHHHHHHHTCSEEEEE-CGG------------GBEEEEEEHHHHHHTTGGGTC
T ss_pred             CCHHHhcCC---C--CcEECCcCcHHHHHHHHHHcCCCceEEE-ecc------------chhhhhhhhhhHhhhhhhcCC
Confidence            468999973   3  678999999999999998 799999996 322            345699999999987654421


Q ss_pred             cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          209 ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       209 ~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      .   .....+++  +|+++++++++++++.+|+++|.+++++++||+|+
T Consensus        63 ~---~~~~~v~~--im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~  106 (123)
T d1y5ha3          63 D---PNTATAGE--LARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE  106 (123)
T ss_dssp             C---TTTSBHHH--HHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET
T ss_pred             C---cccceEEE--EeeccceeeeecchHHHHHHHHHHcCceEEEEEEC
Confidence            1   12345566  48899999999999999999999999999999985

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.45  E-value=4.6e-14  Score=109.77  Aligned_cols=111  Identities=8%  Similarity=0.134  Sum_probs=90.2

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      .+|+++|..+ +.  +.++.++++|.+|+++|. +|++++||+ +++            ++.+|+||..||++++..+..
T Consensus         2 ~tv~~~mip~-~~--v~~v~~~~tl~~a~~~m~~~~~s~~pVv-d~~------------~~~vGiit~~di~~~~~~~~~   65 (132)
T d1yava3           2 ATVGQFMIEA-DK--VAHVQVGNNLEHALLVLTKTGYTAIPVL-DPS------------YRLHGLIGTNMIMNSIFGLER   65 (132)
T ss_dssp             CBHHHHSEEG-GG--SCCEETTCBHHHHHHHHHHHCCSEEEEE-CTT------------CBEEEEEEHHHHHHHHBCSSS
T ss_pred             CCHHHccccc-cc--eEEEcCCCCHHHHHHHHHhhCCCceEEe-ecc------------cccccEEEcchhHHHhhcccc
Confidence            4789999632 23  788999999999999999 799999995 432            234699999999999987543


Q ss_pred             -cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          209 -ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       209 -~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                       .+......+++++  |++++.++.+++++.+|+.+|.++++  +||||++|.
T Consensus        66 ~~~~~~~~~~v~~~--m~~~~~~v~~~~~l~~~~~~~~~~~~--l~Vvd~~~~  114 (132)
T d1yava3          66 IEFEKLDQITVEEV--MLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQV  114 (132)
T ss_dssp             BCGGGTTTSBHHHH--SBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCB
T ss_pred             cccccccccccccc--ccccccccccchhHHHHHHHHHhCCE--EEEEccCCE
Confidence             2345566788885  88999999999999999999988764  999998874

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.45  E-value=1.2e-13  Score=105.83  Aligned_cols=102  Identities=12%  Similarity=0.220  Sum_probs=84.9

Q ss_pred             ccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc
Q 046022          131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE  209 (262)
Q Consensus       131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~  209 (262)
                      +|+++|+.   +  +.++.+++|+.+|++.|. ++++++||. ++             ++.+|+||+.||++++..... 
T Consensus         1 kV~diM~~---~--~~~v~~~~sl~ea~~~~~~~~~~~~~V~-~~-------------~~~~Gvit~~Di~~~l~~~~~-   60 (120)
T d1pbja3           1 RVEDVMVT---D--VDTIDITASLEDVLRNYVENAKGSSVVV-KE-------------GVRVGIVTTWDVLEAIAEGDD-   60 (120)
T ss_dssp             CHHHHCBC---S--CCEEETTCBHHHHHHHHHHHCCCEEEEE-ET-------------TEEEEEEEHHHHHHHHHHTCC-
T ss_pred             ChHHhCCC---C--CeEECCcCcHHHHHHHHHHcCceEEEEE-eC-------------CcEEEEEEeeecccccccccc-
Confidence            37899983   3  688999999999999998 788899885 32             234599999999999987532 


Q ss_pred             chhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          210 LKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       210 l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                         +.+.+++++  |++++.++++++++.+|+++|.++++.++||+|+
T Consensus        61 ---~~~~~v~~~--m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~  103 (120)
T d1pbja3          61 ---LAEVKVWEV--MERDLVTISPRATIKEAAEKMVKNVVWRLLVEED  103 (120)
T ss_dssp             ---TTTSBHHHH--CBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET
T ss_pred             ---ccceeEeee--cccccccccchhHHHHHHHHHHHcCCeEEEEEEC
Confidence               234567774  8999999999999999999999999999999874

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.44  E-value=2.3e-13  Score=105.16  Aligned_cols=105  Identities=18%  Similarity=0.323  Sum_probs=88.5

Q ss_pred             cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      ..|+++|..   +  ++++.+++++.+|+++|. ++++++||. +++             +.+|+||..|+++++..+..
T Consensus         4 ~~V~d~m~~---~--~v~v~~~~tl~~a~~~m~~~~~~~~pV~-d~~-------------~~~Givt~~dl~~~~~~~~~   64 (127)
T d2ef7a1           4 EIVKEYMKT---Q--VISVTKDAKLNDIAKVMTEKNIGSVIVV-DGN-------------KPVGIITERDIVKAIGKGKS   64 (127)
T ss_dssp             CBGGGTSBC---S--CCEEETTCBHHHHHHHHHHHTCSEEEEE-ETT-------------EEEEEEEHHHHHHHHHTTCC
T ss_pred             cCHHHhCCC---C--CeEECCcCcHHHHHHHHHHcCCceEEee-ccc-------------chhhhcchhHHHHHHHhhcc
Confidence            368999973   3  688999999999999998 799999995 322             34599999999999886543


Q ss_pred             cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          209 ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       209 ~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                           .+.++++  +++++++++.+++++.+|+++|.+++++++||||++|.
T Consensus        65 -----~~~~v~~--~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~  109 (127)
T d2ef7a1          65 -----LETKAEE--FMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGN  109 (127)
T ss_dssp             -----TTCBGGG--TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred             -----ccchhhh--hhhhhccccccccchhHHHHHHHHcCceEEEEEeCCCe
Confidence                 2356776  48889999999999999999999999999999998874

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.41  E-value=1.4e-13  Score=107.00  Aligned_cols=108  Identities=19%  Similarity=0.291  Sum_probs=88.8

Q ss_pred             ccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc
Q 046022          131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE  209 (262)
Q Consensus       131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~  209 (262)
                      +|+++|..   +  +.++.+++++.+|+++|. +|++++||. +++   +           +|++|..|+++++......
T Consensus         2 ~V~~lM~~---~--~~~v~~~~tl~~a~~~m~~~~~~~l~V~-d~~---l-----------vg~~~~~~~~~~~~~~~~~   61 (135)
T d3ddja2           2 NIETLMIK---N--PPILSKEDRLGSAFKKINEGGIGRIIVA-NEK---I-----------EGLLTTRDLLSTVESYCKD   61 (135)
T ss_dssp             SGGGTCEE---S--CCEECTTSBHHHHHHHTTGGGCCEEEEE-SSS---E-----------EEEEEHHHHHGGGTTCC--
T ss_pred             EeeEEeeC---C--CeEECCCCcHHHHHHHHHHhCCeEEEEE-ecc---e-----------eceeeccchhhhhcccccc
Confidence            58899973   3  467999999999999998 799999995 432   2           4999999999988654321


Q ss_pred             ------chhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          210 ------LKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       210 ------l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                            ...+.+.++++  +|+++++++++++++.+|+++|.+++++++||||++|.
T Consensus        62 ~~~~~~~~~~~~~~v~~--im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~  116 (135)
T d3ddja2          62 SCSQGDLYHISTTPIID--YMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDK  116 (135)
T ss_dssp             -CCHHHHHHHHTSBGGG--TSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred             chhhhhccccccCCHHH--HhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCE
Confidence                  12345667887  48999999999999999999999999999999999885

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.41  E-value=9.3e-14  Score=110.49  Aligned_cols=112  Identities=13%  Similarity=0.150  Sum_probs=87.5

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      +.+|.++|.+   +  +.++.+++++.+|+++|. ++++++||+ +++            ++.+|+||+.|+++++....
T Consensus         3 ~~~v~~~m~r---~--v~~v~~~~~l~~a~~~m~~~~~~~lPVv-d~~------------~~lvG~it~~Dl~~~~~~~~   64 (156)
T d2yzqa1           3 GVEIEPYYQR---Y--VSIVWEGTPLKAALKALLLSNSMALPVV-DSE------------GNLVGIVDETDLLRDSEIVR   64 (156)
T ss_dssp             GCBSTTTSBS---C--CCCEETTSBHHHHHHHHHTCSSSEEEEE-CTT------------SCEEEEEEGGGGGGCGGGCC
T ss_pred             CCCHHHHhcC---C--CeEECCcCcHHHHHHHHHHcCCCEEEEE-eCC------------CCceeEEeeeechhhhcccc
Confidence            3579999973   4  788999999999999999 799999996 432            34569999999976543211


Q ss_pred             cc--------------------------chhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          208 SE--------------------------LKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       208 ~~--------------------------l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      ..                          .......++++  +|+++++++.+++++.+|++.|.+++++++||||++|.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~  141 (156)
T d2yzqa1          65 IMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAE--IMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGD  141 (156)
T ss_dssp             --------------------------------CCCBGGG--TCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTE
T ss_pred             cccccccccchhhhhhhhhhhhhhHHHhhhcccCCEeeh--hcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCE
Confidence            00                          01134456666  48899999999999999999999999999999998874

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=4.7e-13  Score=104.88  Aligned_cols=119  Identities=13%  Similarity=0.208  Sum_probs=83.0

Q ss_pred             hhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHh
Q 046022          127 KMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMN  205 (262)
Q Consensus       127 ~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~  205 (262)
                      .++.|++++-.-+.++  +.++.+++++.+|+++|. ++++++||+ +.+            ++.+|+||.+|+++++..
T Consensus         3 ~~~~~i~~l~~~~~~~--v~tv~~~~~v~~a~~~m~~~~~~~ipVv-d~~------------~~~vG~it~~Di~~~~~~   67 (140)
T d2nyca1           3 FLKIPIGDLNIITQDN--MKSCQMTTPVIDVIQMLTQGRVSSVPII-DEN------------GYLINVYEAYDVLGLIKG   67 (140)
T ss_dssp             GGGSBGGGSSCCBCSS--CCCBCTTSBHHHHHHHHHHHTCSEEEEE-CTT------------CBEEEEEEHHHHHHHHHT
T ss_pred             cccCcHHHhCCccCCC--CEEEcCcCcHHHHHHHHHHcCCcEEEEE-ecC------------CeEcceehhhHHHHHHhh
Confidence            4567888872112234  789999999999999998 799999996 432            234699999999999987


Q ss_pred             hccc-chhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          206 HASE-LKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       206 ~~~~-l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      .... +..........-..+..++++|++++++.+|+++|.++++.++||||++|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~  123 (140)
T d2nyca1          68 GIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGR  123 (140)
T ss_dssp             C----CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSB
T ss_pred             ccccccccchhhhhhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCe
Confidence            5422 111111111111234567899999999999999999999999999998874

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.40  E-value=8.4e-13  Score=102.02  Aligned_cols=106  Identities=13%  Similarity=0.192  Sum_probs=85.7

Q ss_pred             ccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc
Q 046022          131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE  209 (262)
Q Consensus       131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~  209 (262)
                      +|+++|..   +  ++++.+++|+.+|++.|. ++++++||+..+..           ++.+|++|..|+++++......
T Consensus         2 ~V~dim~~---~--~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~-----------~~~iGi~~~~dl~~~~~~~~~~   65 (131)
T d2riha1           2 RTSELLKR---P--PVSLPETATIREVATELAKNRVGLAVLTARDNP-----------KRPVAVVSERDILRAVAQRLDL   65 (131)
T ss_dssp             BGGGGCCS---C--CEEEETTCBHHHHHHHHHHHTCSEEEEEETTEE-----------EEEEEEEEHHHHHHHHHTTCCT
T ss_pred             CHHHhccC---C--CEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCC-----------CEEEEEEeeecccccccccccc
Confidence            68999973   3  588999999999999998 79999999643332           2346999999999998876432


Q ss_pred             chhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          210 LKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       210 l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                           .....   .+.++..++.+++++.+|+++|.+++++.+||||++|.
T Consensus        66 -----~~~~~---~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~  108 (131)
T d2riha1          66 -----DGPAM---PIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGE  108 (131)
T ss_dssp             -----TSBSG---GGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred             -----ccccc---cccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCe
Confidence                 11222   25677889999999999999999999999999999885

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=7.7e-13  Score=103.78  Aligned_cols=109  Identities=17%  Similarity=0.238  Sum_probs=83.4

Q ss_pred             ccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc
Q 046022          131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE  209 (262)
Q Consensus       131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~  209 (262)
                      .|.++|+.   .  ++++.+++++.+|++.|. +|++++||+ +++            ++.+|+||+.||++++..+...
T Consensus         5 ~v~~~m~~---~--p~~v~~~~~v~~a~~~m~~~~~~~ipVv-d~~------------~~~vGiis~~Dl~~~~~~~~~~   66 (145)
T d1o50a3           5 DVCKLISL---K--PTVVEEDTPIEEIVDRILEDPVTRTVYV-ARD------------NKLVGMIPVMHLLKVSGFHFFG   66 (145)
T ss_dssp             HHTTSSCC---C--CEEECTTCBHHHHHHHHHHSTTCCEEEE-EET------------TEEEEEEEHHHHHHHHHHHHHC
T ss_pred             EhHHhCCC---C--CEEECCcCcHHHHHHHHHHcCCceEEEe-ccC------------cceeeeeccchhhhhhhccccc
Confidence            35667762   3  589999999999999998 799999996 322            2346999999999998765311


Q ss_pred             -----------chhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          210 -----------LKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       210 -----------l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                                 +..+...+++++  + .+++++.+++++.+|+++|.+++++++||||++|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~  125 (145)
T d1o50a3          67 FIPKEELIRSSMKRLIAKNASEI--M-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGE  125 (145)
T ss_dssp             CCC-------CCCCCSSCBHHHH--C-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred             ccchhHHHHhhhhhccccCHHHH--c-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCe
Confidence                       112233344442  3 46789999999999999999999999999998875

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.36  E-value=7.5e-13  Score=107.42  Aligned_cols=118  Identities=16%  Similarity=0.229  Sum_probs=88.6

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ...+.|+|..+  + .++++++++++.+|+..|. ++++++||+ +++.           ++.+|+||..||++++....
T Consensus        19 ~~~~~dvm~~s--~-~vv~i~~~~~v~~A~~~m~~~~i~~lpVv-d~~~-----------~~~vGiis~~Di~~~l~~~~   83 (179)
T d2ooxe1          19 SRTSYDVLPTS--F-RLIVFDVTLFVKTSLSLLTLNNIVSAPLW-DSEA-----------NKFAGLLTMADFVNVIKYYY   83 (179)
T ss_dssp             HSBHHHHSCSE--E-EEEEEETTSBHHHHHHHHHHHTCSCEEEE-ETTT-----------TEEEEEECHHHHHHHHHHHH
T ss_pred             CCEeeeeCCCC--C-cEEEEECcchHHHHHHHHHHcCCCeEEEE-eCCC-----------CeeEEEEeechHHHHHHhcc
Confidence            34688999732  1 2799999999999999999 799999996 4322           23459999999999987542


Q ss_pred             cc------chhhhc-------cccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCCC
Q 046022          208 SE------LKDITS-------HSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGAT  261 (262)
Q Consensus       208 ~~------l~~l~~-------~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~~  261 (262)
                      ..      ......       ......+.++++++++.+++++.+|+.+|.++++.++||||++|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~  150 (179)
T d2ooxe1          84 QSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGET  150 (179)
T ss_dssp             HHCSCGGGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTT
T ss_pred             ccccchhhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCc
Confidence            11      001111       1112234578899999999999999999999999999999988764

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.34  E-value=3.1e-12  Score=101.59  Aligned_cols=112  Identities=14%  Similarity=0.199  Sum_probs=86.0

Q ss_pred             ccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc
Q 046022          131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE  209 (262)
Q Consensus       131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~  209 (262)
                      |+++++-.+..+  ++++.+++++.+|+++|. ++++++||. ++.            ++.+|+||..||++++......
T Consensus         2 pl~~~~ig~~~~--vv~v~~~~~v~~a~~~m~~~~~~~lpVv-d~~------------~~~vG~it~~Dl~~~~~~~~~~   66 (153)
T d2ooxe2           2 PLNQMTIGTWSN--LATASMETKVYDVIKMLAEKNISAVPIV-NSE------------GTLLNVYESVDVMHLIQDGDYS   66 (153)
T ss_dssp             BGGGTCCSBCSS--CCCBCTTSBHHHHHHHHHHTTCSEEEEE-CGG------------GBEEEEEEHHHHHHHHGGGCGG
T ss_pred             CHHHcCCCCCCC--CeEEeCcCcHHHHHHHHHHcCcceEeee-ccc------------ceEEEEEEeeeeeehhcccccc
Confidence            677776323344  688999999999999998 799999996 422            2446999999999998765321


Q ss_pred             chhhhccccchh----cccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          210 LKDITSHSIREL----GALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       210 l~~l~~~ti~eL----~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      .   ...++.+.    ..+..+++++.+++++.+|+++|.+++++++||||++|.
T Consensus        67 ~---~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~  118 (153)
T d2ooxe2          67 N---LDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLK  118 (153)
T ss_dssp             G---GGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCB
T ss_pred             c---cccchhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCE
Confidence            1   12333331    234577899999999999999999999999999998874

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.29  E-value=3.7e-12  Score=100.80  Aligned_cols=112  Identities=8%  Similarity=0.107  Sum_probs=86.3

Q ss_pred             hccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022          128 MSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       128 ~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                      ...+|+++|..   +  +.++.+++++.+|+++|. ++++++||+.+++.           +..+|++|+.|+++++...
T Consensus         9 ~~~~V~diM~~---~--~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~-----------~~lvg~is~~dl~~~l~~~   72 (160)
T d2d4za3           9 YNIQVGDIMVR---D--VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDT-----------NTLLGSIDRTEVEGLLQRR   72 (160)
T ss_dssp             SSCBTTSSSBS---S--CCCEETTCBHHHHHHHHHHCCCSEEEEESCTTT-----------CBEEEEEEHHHHHHHHHHH
T ss_pred             cceEHHHhcCC---C--CeEECCCCcHHHHHHHHHhcCCCcccccccccc-----------ccccccchHHHHHHHHhhc
Confidence            35689999983   3  688999999999999998 79999999643322           2345999999999999865


Q ss_pred             cccch---------------------hhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          207 ASELK---------------------DITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       207 ~~~l~---------------------~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      .....                     ......+.  .+|+++++++.+++++.+|+++|.++|++++||+|+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~  142 (160)
T d2d4za3          73 ISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFET--CRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM  142 (160)
T ss_dssp             HHTTSSSCCCSCCBHHHHHHHHHHHTTCBCCTTS--SCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred             cccccccchhhccccchhhhhhhhhcccccceee--ecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEEC
Confidence            31100                     00011112  257788999999999999999999999999999984

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=5.3e-12  Score=100.36  Aligned_cols=117  Identities=16%  Similarity=0.220  Sum_probs=86.9

Q ss_pred             ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022          129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA  207 (262)
Q Consensus       129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~  207 (262)
                      ..++.|+|.. . . .++++++++|+.+|+++|. ++++++||+.+ +.           ++.+|+||..|+++++....
T Consensus        12 ~~t~~Dlm~~-~-~-~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~-~~-----------~~~vG~is~~Dl~~~~~~~~   76 (159)
T d2v8qe2          12 SHRCYDLIPT-S-S-KLVVFDTSLQVKKAFFALVTNGVRAAPLWDS-KK-----------QSFVGMLTITDFINILHRYY   76 (159)
T ss_dssp             HSBGGGGSCS-E-E-EEEEEETTSBHHHHHHHHHHHTCSEEEEEET-TT-----------TEEEEEEEHHHHHHHHHHHH
T ss_pred             CCEEEeECCC-C-C-ceEEEcCCCcHHHHHHHHHHcCCCceeEEEC-CC-----------CcEEEEEEHHHHHHHHHhcc
Confidence            4578999962 1 1 2789999999999999998 79999999633 22           23469999999999987643


Q ss_pred             ccch----h-----hhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC-CCC
Q 046022          208 SELK----D-----ITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS-SGA  260 (262)
Q Consensus       208 ~~l~----~-----l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~-~g~  260 (262)
                      ....    .     ...........+.++++++++++++.+|+++|.++++.++||+|+ +|.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~  139 (159)
T d2v8qe2          77 KSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGN  139 (159)
T ss_dssp             HHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCC
T ss_pred             ccccchhhhhhhhhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCe
Confidence            2110    0     111111112357788999999999999999999999999999985 454

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.26  E-value=5e-12  Score=97.38  Aligned_cols=95  Identities=16%  Similarity=0.201  Sum_probs=75.1

Q ss_pred             eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022          145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA  223 (262)
Q Consensus       145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~  223 (262)
                      ++++.|++++.+|+++|. ++++++||+.+...           ++++|+||..||++....+         ....+ -+
T Consensus         7 pvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~-----------~~lvGivt~~Di~~~~~~~---------~~~~~-~~   65 (126)
T d1zfja4           7 PFFLTPEHKVSEAEELMQRYRISGVPIVETLAN-----------RKLVGIITNRDMRFISDYN---------APISE-HM   65 (126)
T ss_dssp             CCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT-----------CBEEEEEEHHHHHHCSCSS---------SBTTT-SC
T ss_pred             ceEECCCCCHHHHHHHHHHhCCCcEEEEeeccC-----------CeEEEEeEHHHHHHhhccC---------Cceee-ee
Confidence            368999999999999999 79999999643222           3456999999997643221         12222 14


Q ss_pred             cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      ++.+++++.+++++.+|+++|.+++++.+||||++|.
T Consensus        66 ~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~  102 (126)
T d1zfja4          66 TSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGR  102 (126)
T ss_dssp             CCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSB
T ss_pred             eccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCe
Confidence            6678999999999999999999999999999998874

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.25  E-value=1.3e-12  Score=100.30  Aligned_cols=100  Identities=16%  Similarity=0.151  Sum_probs=67.5

Q ss_pred             ccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc
Q 046022          131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE  209 (262)
Q Consensus       131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~  209 (262)
                      +|+++|..   +  ++++.+++++.+|+++|. .+++++||+ +++            ++.+|+||..|+++...     
T Consensus         2 ~v~diM~~---~--~v~v~~~~~v~~a~~~m~~~~~~~~~Vv-d~~------------~~~~G~it~~dl~~~~~-----   58 (122)
T d2yzqa2           2 RVKTIMTQ---N--PVTITLPATRNYALELFKKYKVRSFPVV-NKE------------GKLVGIISVKRILVNPD-----   58 (122)
T ss_dssp             BHHHHSEE---S--CCCEESSCC------------CCEEEEE-CTT------------CCEEEEEESSCC----------
T ss_pred             CcccccCC---C--CEEECCcCcHHHHHHHHHHcCCcEEEEE-ecc------------ccchhhhhcchhhhhhc-----
Confidence            47889973   3  578999999999999999 699999996 432            34469999999986432     


Q ss_pred             chhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          210 LKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       210 l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                           ..++.+  ++.++++++++++++.+|+.+|.++++.++||||++|.
T Consensus        59 -----~~~~~~--~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~  102 (122)
T d2yzqa2          59 -----EEQLAM--LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGK  102 (122)
T ss_dssp             ----------C--CCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred             -----ccchhh--ccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCE
Confidence                 234565  48889999999999999999999999999999998874

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=6.1e-12  Score=96.20  Aligned_cols=100  Identities=13%  Similarity=0.194  Sum_probs=82.7

Q ss_pred             ccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc
Q 046022          131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE  209 (262)
Q Consensus       131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~  209 (262)
                      .|+++|..   +  +.++.+++|+.+|+++|. .+.+++||+ +++            ++.+|+||..|++++.      
T Consensus         2 ~v~~~m~~---~--~~~v~~~~tv~ea~~~m~~~~~~~v~Vv-d~~------------~~~~Gii~~~dl~~~~------   57 (121)
T d1vr9a3           2 KVKKWVTQ---D--FPMVEESATVRECLHRMRQYQTNECIVK-DRE------------GHFRGVVNKEDLLDLD------   57 (121)
T ss_dssp             BGGGGCBS---C--SCEEETTCBHHHHHHHHHHTTSSEEEEE-CTT------------SBEEEEEEGGGGTTSC------
T ss_pred             CchhhhcC---C--CeEECCCCCHHHHHHhhhhcCcEEEEEE-eCC------------ceeEEEeehhhhhhhh------
Confidence            47888873   3  678999999999999998 688899995 432            2446999999997641      


Q ss_pred             chhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          210 LKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       210 l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                          ...++.++  +.++++++++++++.+|+++|.++++..+||||++|.
T Consensus        58 ----~~~~v~~~--~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~  102 (121)
T d1vr9a3          58 ----LDSSVFNK--VSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMR  102 (121)
T ss_dssp             ----TTSBSGGG--CBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCB
T ss_pred             ----cccccccc--ccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCe
Confidence                13467764  7888999999999999999999999999999999985

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.25  E-value=1.4e-13  Score=105.73  Aligned_cols=98  Identities=14%  Similarity=0.200  Sum_probs=44.0

Q ss_pred             EEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhccc
Q 046022          146 WTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGAL  224 (262)
Q Consensus       146 ~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~  224 (262)
                      +++.|++++.+|+++|. ++++++||+.++.          .+++++||||.+|+........       +.++.+...+
T Consensus         7 vtv~~~~tl~da~~~m~~~~i~~~pVvd~~~----------~~~~lvGivT~~Di~~~~~~~~-------~~~~~~~~~~   69 (120)
T d1jr1a4           7 VVLSPKDRVRDVFEAKARHGFCGIPITDTGR----------MGSRLVGIISSRDIDFLKEEEH-------DRFLEEIMTK   69 (120)
T ss_dssp             CC----CCCC--CCBC-------------------------CTTCCC-----------------------------CCSB
T ss_pred             EEECCcCCHHHHHHHHHHhCCCeEEEeeccc----------cCCeEeeeeeeeeeeehhcccc-------CceeEEEEee
Confidence            58999999999999998 7999999964322          1234569999999854333322       2344544345


Q ss_pred             CcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          225 NENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       225 ~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      .++++++++++++.+|+++|.+++++++||||++|.
T Consensus        70 ~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~  105 (120)
T d1jr1a4          70 REDLVVAPAGITLKEANEILQRSKKGKLPIVNENDE  105 (120)
T ss_dssp             TTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTE
T ss_pred             ccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCE
Confidence            567999999999999999999999999999998874

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=4.3e-12  Score=99.63  Aligned_cols=115  Identities=12%  Similarity=0.159  Sum_probs=85.7

Q ss_pred             hccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022          128 MSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH  206 (262)
Q Consensus       128 ~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~  206 (262)
                      +..+++++.-...++  +.++.+++++.+|+++|. ++++++||+ +++            ++.+|+||.+||++++...
T Consensus         7 ~~~~l~~l~i~~~~~--v~~v~~~~tv~eal~~m~~~~~~~lpVv-d~~------------~~~~Gvit~~di~~~l~~~   71 (145)
T d2v8qe1           7 MSKSLEELQIGTYAN--IAMVRTTTPVYVALGIFVQHRVSALPVV-DEK------------GRVVDIYSKFDVINLAAEK   71 (145)
T ss_dssp             GGSBHHHHTCSBCSS--CCCEETTCBHHHHHHHHHHHCCSEEEEE-CTT------------SBEEEEEEGGGTGGGGGSS
T ss_pred             hhCCHHHHcCCCCCC--ceEEcCcCcHHHHHHHHHHcCCCccccc-ccC------------CceEEEEEcchhhhhhhcc
Confidence            455777765322234  678999999999999998 799999996 422            3456999999999888654


Q ss_pred             cccchhhhccccch----hcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          207 ASELKDITSHSIRE----LGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       207 ~~~l~~l~~~ti~e----L~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                      ....   .+.++.+    -..+..+++++.+++++.+|+++|.++++.++||||++|.
T Consensus        72 ~~~~---~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~  126 (145)
T d2v8qe1          72 TYNN---LDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDV  126 (145)
T ss_dssp             CCCC---CSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSB
T ss_pred             cccc---hhhhhhhccchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCE
Confidence            2111   1112211    1135678999999999999999999999999999998874

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.18  E-value=2e-11  Score=96.29  Aligned_cols=100  Identities=14%  Similarity=0.216  Sum_probs=81.2

Q ss_pred             ccccccccCCCCCeeEEeCCCCCHHHHHHHHhc------CCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHH
Q 046022          131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSK------GIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMM  204 (262)
Q Consensus       131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~------g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~  204 (262)
                      +++.+|+.   +  ++++.+++|+.+|+++|.+      .++.+||+ ++.            ++.+|+|+..||++.. 
T Consensus         2 taG~iM~~---~--~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vv-d~~------------~~l~G~v~~~dl~~~~-   62 (144)
T d2yvxa2           2 EAGGLMTP---E--YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV-DEK------------GRLKGVLSLRDLIVAD-   62 (144)
T ss_dssp             SSGGGCBS---C--CCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEB-CTT------------CBBCCBCBHHHHTTSC-
T ss_pred             CcccccCC---C--CEEECCCCcHHHHHHHHHHhcccccceeeeEEe-cCC------------CCEecccchhhhhhcc-
Confidence            47889983   3  7899999999999999963      36778885 322            2345999999986531 


Q ss_pred             hhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          205 NHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       205 ~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                               ...++++  +|+++++++++++++.+|+++|.++++..+||||++|.
T Consensus        63 ---------~~~~v~~--im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~  107 (144)
T d2yvxa2          63 ---------PRTRVAE--IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGR  107 (144)
T ss_dssp             ---------TTCBSTT--TSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCB
T ss_pred             ---------cccchHH--hcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCE
Confidence                     2346666  59999999999999999999999999999999999874

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.18  E-value=3.2e-11  Score=93.02  Aligned_cols=100  Identities=19%  Similarity=0.235  Sum_probs=81.2

Q ss_pred             ccccccccCCCCCeeEEeCCCCCHHHHHHHHh-c-----CCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHH
Q 046022          131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-K-----GIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMM  204 (262)
Q Consensus       131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~-----g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~  204 (262)
                      +++.+|+.   +  ++++.+++++.+|++.|. +     .++.+||+ ++.            ++..|+++..++++.  
T Consensus         2 taG~iM~~---d--~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vv-d~~------------~~l~G~v~~~~l~~~--   61 (127)
T d2ouxa2           2 TAGAIMTT---E--FVSIVANQTVRSAMYVLKNQADMAETIYYVYVV-DQE------------NHLVGVISLRDLIVN--   61 (127)
T ss_dssp             BHHHHCBS---C--CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEE-CTT------------CBEEEEEEHHHHTTS--
T ss_pred             ChhHhCCC---C--cEEECCCCcHHHHHHHhHhhcccccceeeeEEE-ecC------------CeEEEEEEeeccccc--
Confidence            46889972   3  789999999999999996 3     36789986 432            234599998887642  


Q ss_pred             hhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022          205 NHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA  260 (262)
Q Consensus       205 ~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~  260 (262)
                              -.+.++++  +|+++++++++++++.+|+++|.++++.++||||++|.
T Consensus        62 --------~~~~~v~~--im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~  107 (127)
T d2ouxa2          62 --------DDDTLIAD--ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDH  107 (127)
T ss_dssp             --------CTTSBHHH--HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCB
T ss_pred             --------cccEEhhh--hccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCE
Confidence                    12457887  49999999999999999999999999999999998874

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.1e-10  Score=93.81  Aligned_cols=114  Identities=12%  Similarity=0.095  Sum_probs=82.5

Q ss_pred             ccccccccCCC-CCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022          131 PVSSIIGHCPE-GLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS  208 (262)
Q Consensus       131 ~V~~im~~~~~-~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~  208 (262)
                      .++|+|..... .+..+.+.+++++.+|.++|. ++++++||+.+++.           ++.+|+||++||++++.....
T Consensus         4 ~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~-----------~~lvG~is~~dl~~~l~~~~~   72 (169)
T d2j9la1           4 LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES-----------QRLVGFVLRRDLIISIENARK   72 (169)
T ss_dssp             BHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT-----------CBEEEEEEHHHHHHHHHHHHT
T ss_pred             chhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCC-----------CeEEEEEEhHHHHHHHhcccc
Confidence            46788863111 111245678899999999999 79999999644332           345699999999999975321


Q ss_pred             cch--------------------hhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022          209 ELK--------------------DITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS  257 (262)
Q Consensus       209 ~l~--------------------~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~  257 (262)
                      ...                    .....++++  +|+++++++.+++++.+|+++|.++++.++||+|+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~  139 (169)
T d2j9la1          73 KQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRN--ILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN  139 (169)
T ss_dssp             SCSCCCTTCEEECSSSCCCCCTTCCCCEECGG--GEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred             cccccccchhhhhcccchhhhhccccccchhh--hccCCCEEECCCCcHHHHHHHHHhcCceEEEEEEC
Confidence            100                    011223343  58889999999999999999999999999999874