Citrus Sinensis ID: 046039
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 502 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SJG6 | 559 | Pentatricopeptide repeat- | yes | no | 0.980 | 0.880 | 0.639 | 0.0 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.976 | 0.758 | 0.413 | 1e-123 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.962 | 0.779 | 0.420 | 1e-116 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.960 | 0.774 | 0.382 | 1e-103 | |
| Q683I9 | 573 | Pentatricopeptide repeat- | no | no | 0.928 | 0.813 | 0.407 | 1e-101 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.968 | 0.910 | 0.375 | 1e-100 | |
| Q9LSB8 | 687 | Putative pentatricopeptid | no | no | 0.970 | 0.708 | 0.387 | 1e-100 | |
| O49399 | 545 | Pentatricopeptide repeat- | no | no | 0.906 | 0.834 | 0.364 | 1e-100 | |
| Q9LXF2 | 548 | Pentatricopeptide repeat- | no | no | 0.928 | 0.850 | 0.369 | 3e-99 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.918 | 0.676 | 0.382 | 8e-99 |
| >sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/494 (63%), Positives = 391/494 (79%), Gaps = 2/494 (0%)
Query: 1 MKDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIR 60
M++LK+IHA LIKTGL D + ASR+LAFC + D+NYAYLVFT+I N F+WNTIIR
Sbjct: 38 MRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIR 97
Query: 61 GFSQSSTPRNAILLFIDMLVTSP-IQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGL 119
GFS+SS P AI +FIDML +SP ++PQRLTYPS+FKAY +LG ARDG QLHG V+K+GL
Sbjct: 98 GFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGL 157
Query: 120 EFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFD 179
E D FI NT+++MY CG L EA +F + FDVVAWNSMI+G AKCG ID+++ LFD
Sbjct: 158 EDDSFIRNTMLHMYVTCGCLIEAWRIFLGM-IGFDVVAWNSMIMGFAKCGLIDQAQNLFD 216
Query: 180 KMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQ 239
+M RN VSWNSMISG+VRN +FK+AL++FREMQE+++KP FTMVSLLNACA LGA Q
Sbjct: 217 EMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQ 276
Query: 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAM 299
G WIH ++V N FELN+IVVTA+IDMYCKCGC E L VF PKK LSCWNSM+ GLA
Sbjct: 277 GRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLAN 336
Query: 300 NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIK 359
NG+E A+ LFS L+ S L+PD +SFI VLTAC HSG+V++A ++F LM E Y I+PSIK
Sbjct: 337 NGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIK 396
Query: 360 HYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419
HY+ MV+ LG AGLLEEAE LI++MP + D +IW SLLSACRK GN+EMAK+AAK + +L
Sbjct: 397 HYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKL 456
Query: 420 DKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRL 479
D +E+CGYVL+SN YA+ FEEA+E+RLLMKE ++EKE GCS IEVD EVHEF++ G
Sbjct: 457 DPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFISCGGT 516
Query: 480 HPKAPEVYLLLNDL 493
HPK+ E+Y LL+ L
Sbjct: 517 HPKSAEIYSLLDIL 530
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 444 bits (1141), Expect = e-123, Method: Compositional matrix adjust.
Identities = 210/508 (41%), Positives = 329/508 (64%), Gaps = 18/508 (3%)
Query: 1 MKDLKKIHAHLIKTGLAKDPIAASRILAFCTSP---AGDINYAYLVFTQIKKPNLFIWNT 57
++DL +IHA IK+G +D +AA+ IL FC + D++YA+ +F Q+ + N F WNT
Sbjct: 36 IRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNT 95
Query: 58 IIRGFSQSSTPRN--AILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVV 115
IIRGFS+S + AI LF +M+ ++P R T+PS+ KA A+ G ++G Q+HG +
Sbjct: 96 IIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLAL 155
Query: 116 KQGLEFDQFIHNTIIYMYANCGFLSEARLMF-------------DEVDTEFDVVAWNSMI 162
K G D+F+ + ++ MY CGF+ +AR++F D + ++V WN MI
Sbjct: 156 KYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMI 215
Query: 163 IGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEF 222
G + G+ +R LFDKM R+ VSWN+MISGY N FK+A+E+FREM++ +I+P+
Sbjct: 216 DGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYV 275
Query: 223 TMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTV 282
T+VS+L A ++LG++ GEW+H + + ++ ++ +A+IDMY KCG E+A+ VF +
Sbjct: 276 TLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERL 335
Query: 283 PKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAK 342
P++ + W++M+ G A++G +AI F ++ + ++P +++I +LTAC+H G V + +
Sbjct: 336 PRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGR 395
Query: 343 DYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRK 402
YF+ M ++P I+HY CMVD LGR+GLL+EAE+ I +MP PD +IW +LL ACR
Sbjct: 396 RYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRM 455
Query: 403 HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCS 462
GN+EM K+ A ++++ ++S YV +SN+YA+ + E E RL MKE I K+PGCS
Sbjct: 456 QGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCS 515
Query: 463 LIEVDGEVHEFVAGGRLHPKAPEVYLLL 490
LI++DG +HEFV HPKA E+ +L
Sbjct: 516 LIDIDGVLHEFVVEDDSHPKAKEINSML 543
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/487 (42%), Positives = 310/487 (63%), Gaps = 4/487 (0%)
Query: 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGD--INYAYLVFTQIKKPNLFIWNTII 59
++LK+IHA ++KTGL +D A ++ L+FC S + YA +VF +P+ F+WN +I
Sbjct: 28 EELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMI 87
Query: 60 RGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGL 119
RGFS S P ++LL+ ML +S T+PSL KA + L + Q+H ++ K G
Sbjct: 88 RGFSCSDEPERSLLLYQRMLCSSAPH-NAYTFPSLLKACSNLSAFEETTQIHAQITKLGY 146
Query: 120 EFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFD 179
E D + N++I YA G A L+FD + E D V+WNS+I G K G++D + LF
Sbjct: 147 ENDVYAVNSLINSYAVTGNFKLAHLLFDRI-PEPDDVSWNSVIKGYVKAGKMDIALTLFR 205
Query: 180 KMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQ 239
KM +N +SW +MISGYV+ KEAL+LF EMQ +++P ++ + L+ACA+LGA+ Q
Sbjct: 206 KMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQ 265
Query: 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAM 299
G+WIH++L +++++ +IDMY KCG E AL+VF + KK + W +++ G A
Sbjct: 266 GKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAY 325
Query: 300 NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIK 359
+G+ EAI F +Q +KP+ I+F AVLTAC+++G V + K F M Y +KP+I+
Sbjct: 326 HGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIE 385
Query: 360 HYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419
HY C+VD LGRAGLL+EA++ I+ MP P+A+IWG+LL ACR H NIE+ ++ + +I +
Sbjct: 386 HYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAI 445
Query: 420 DKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRL 479
D YV +N++A ++++A E R LMKE + K PGCS I ++G HEF+AG R
Sbjct: 446 DPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRS 505
Query: 480 HPKAPEV 486
HP+ ++
Sbjct: 506 HPEIEKI 512
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/491 (38%), Positives = 309/491 (62%), Gaps = 9/491 (1%)
Query: 3 DLKKIHAHLIKTGLAKDPIAASRILAFCTS------PAGDINYAYLVFTQIKKPNLFIWN 56
DLK IH L++T L D ASR+LA C P + YAY +F+QI+ PNLF++N
Sbjct: 27 DLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFN 86
Query: 57 TIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVK 116
+IR FS + P A + ML S I P +T+P L KA +++ G Q H ++V+
Sbjct: 87 LLIRCFSTGAEPSKAFGFYTQML-KSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVR 145
Query: 117 QGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRR 176
G + D ++ N++++MYANCGF++ A +F ++ DVV+W SM+ G KCG ++ +R
Sbjct: 146 FGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFR-DVVSWTSMVAGYCKCGMVENARE 204
Query: 177 LFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGA 236
+FD+M RN +W+ MI+GY +N F++A++LF M+ + + +E MVS++++CA LGA
Sbjct: 205 MFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGA 264
Query: 237 IRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFG 296
+ GE + ++V + +N I+ TA++DM+ +CG E+A+ VF +P+ W+S++ G
Sbjct: 265 LEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKG 324
Query: 297 LAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP 356
LA++G+ ++A+ FS + S P ++F AVL+AC+H G V + + + M + + I+P
Sbjct: 325 LAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEP 384
Query: 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQI 416
++HY C+VD LGRAG L EAE I M P+A I G+LL AC+ + N E+A++ +
Sbjct: 385 RLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNML 444
Query: 417 IELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAG 476
I++ S YVL+SN+YA + Q+++ R +MKE ++K PG SLIE+DG++++F G
Sbjct: 445 IKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMG 504
Query: 477 -GRLHPKAPEV 486
+ HP+ ++
Sbjct: 505 DDQKHPEMGKI 515
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/479 (40%), Positives = 301/479 (62%), Gaps = 13/479 (2%)
Query: 34 AGDINYAYLVFTQIKKPNL--FIWNTIIRGFSQ--SSTPRNAILLFIDMLVTSPIQPQRL 89
A I YA +F I+ L F+WN IIR SS R++ + + + P
Sbjct: 5 AAIIAYANPIF-HIRHLKLESFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFH 63
Query: 90 TYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEV 149
T+P L ++ G + H +++ GL+ D F+ +++ MY++CG L A+ +FD+
Sbjct: 64 TFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDS 123
Query: 150 DTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELF 209
++ D+ AWNS++ AK G ID++R+LFD+M RN +SW+ +I+GYV K+KEAL+LF
Sbjct: 124 GSK-DLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLF 182
Query: 210 REMQ-----EQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIID 264
REMQ E ++P+EFTM ++L+AC +LGA+ QG+W+H ++ E++ ++ TA+ID
Sbjct: 183 REMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALID 242
Query: 265 MYCKCGCPERALQVFNTV-PKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS-NLKPDY 322
MY KCG ERA +VFN + KK + +++M+ LAM G +E +LFS + +S N+ P+
Sbjct: 243 MYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNS 302
Query: 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIR 382
++F+ +L AC H G +N+ K YF +M E + I PSI+HY CMVD GR+GL++EAE I
Sbjct: 303 VTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIA 362
Query: 383 SMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEE 442
SMP +PD +IWGSLLS R G+I+ + A K++IELD S YVL+SN+YA + ++ E
Sbjct: 363 SMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWME 422
Query: 443 AMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQEMG 501
R M+ I K PGCS +EV+G VHEFV G ++ +Y +L+++ ++E G
Sbjct: 423 VKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAG 481
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/488 (37%), Positives = 303/488 (62%), Gaps = 2/488 (0%)
Query: 3 DLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGF 62
+ KKI+A +I GL++ ++++ FC D++YA +F Q+ PN+F++N+IIR +
Sbjct: 25 EWKKINASIIIHGLSQSSFMVTKMVDFCDKIE-DMDYATRLFNQVSNPNVFLYNSIIRAY 83
Query: 63 SQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFD 122
+ +S + I ++ +L S P R T+P +FK+ A LG G Q+HG + K G F
Sbjct: 84 THNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFH 143
Query: 123 QFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMV 182
N +I MY L +A +FDE+ E DV++WNS++ G A+ G++ +++ LF M+
Sbjct: 144 VVTENALIDMYMKFDDLVDAHKVFDEM-YERDVISWNSLLSGYARLGQMKKAKGLFHLML 202
Query: 183 SRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEW 242
+ VSW +MISGY + EA++ FREMQ I+P E +++S+L +CA+LG++ G+W
Sbjct: 203 DKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKW 262
Query: 243 IHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGY 302
IH + F T V A+I+MY KCG +A+Q+F + K + W++M+ G A +G
Sbjct: 263 IHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGN 322
Query: 303 ENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYS 362
+ AI+ F+ +Q + +KP+ I+F+ +L+AC+H G + YF +M + Y+I+P I+HY
Sbjct: 323 AHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYG 382
Query: 363 CMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422
C++D L RAG LE A ++ ++MP PD+ IWGSLLS+CR GN+++A A ++EL+
Sbjct: 383 CLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPE 442
Query: 423 ESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPK 482
+ YVL++N+YA ++E+ R +++ ++K PG SLIEV+ V EFV+G P
Sbjct: 443 DMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGDNSKPF 502
Query: 483 APEVYLLL 490
E+ ++L
Sbjct: 503 WTEISIVL 510
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/490 (38%), Positives = 301/490 (61%), Gaps = 3/490 (0%)
Query: 5 KKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQ 64
KK+H H++K GL + + L S G ++ A VF + K ++F WN +I G+++
Sbjct: 155 KKLHCHVVKFGLGSN-LYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNR 213
Query: 65 SSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQF 124
+I L ++M + + P +T + A +++ ++H V + E
Sbjct: 214 MKEYEESIELLVEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLR 272
Query: 125 IHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSR 184
+ N ++ YA CG + A +F + DV++W S++ G + G + +R FD+M R
Sbjct: 273 LENALVNAYAACGEMDIAVRIFRSMKAR-DVISWTSIVKGYVERGNLKLARTYFDQMPVR 331
Query: 185 NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIH 244
+ +SW MI GY+R F E+LE+FREMQ + P EFTMVS+L ACA LG++ GEWI
Sbjct: 332 DRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIK 391
Query: 245 NFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYEN 304
++ N + + +V A+IDMY KCGC E+A +VF+ + ++ W +MV GLA NG
Sbjct: 392 TYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQ 451
Query: 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCM 364
EAIK+F +Q +++PD I+++ VL+ACNHSG V+QA+ +F M ++I+PS+ HY CM
Sbjct: 452 EAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCM 511
Query: 365 VDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424
VD LGRAGL++EA +++R MP +P++I+WG+LL A R H + MA+ AAK+I+EL+ +
Sbjct: 512 VDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNG 571
Query: 425 CGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAP 484
Y L+ N+YA ++++ E R + +V I+K PG SLIEV+G HEFVAG + H ++
Sbjct: 572 AVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSE 631
Query: 485 EVYLLLNDLG 494
E+Y+ L +L
Sbjct: 632 EIYMKLEELA 641
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/491 (36%), Positives = 304/491 (61%), Gaps = 36/491 (7%)
Query: 1 MKDLKKIHAHLIKTGLAKDPIAASRILAFC-TSP-AGDINYAYLVFTQIKKPNLFIWNTI 58
+ ++++ HA ++KTGL D +AS+++AF T+P ++YA+ + +I PN F N++
Sbjct: 52 LTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSV 111
Query: 59 IRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQG 118
IR ++ SSTP A+ +F +ML+ P+ P + ++ + KA A +G Q+HG +K G
Sbjct: 112 IRAYANSSTPEVALTVFREMLL-GPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSG 170
Query: 119 LEFDQFIHNTIIYMYANCGF-------------------------------LSEARLMFD 147
L D F+ NT++ +Y G+ + EAR +FD
Sbjct: 171 LVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFD 230
Query: 148 EVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALE 207
E++ E +V +WN MI G A G + E++ +FD M R+ VSWN+M++ Y + E LE
Sbjct: 231 EME-ERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLE 289
Query: 208 LFREMQEQNI-KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMY 266
+F +M + + KP FT+VS+L+ACA LG++ QGEW+H ++ + E+ + TA++DMY
Sbjct: 290 VFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMY 349
Query: 267 CKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFI 326
KCG ++AL+VF K+ +S WNS++ L+++G +A+++FS + KP+ I+FI
Sbjct: 350 SKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFI 409
Query: 327 AVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS 386
VL+ACNH G ++QA+ F +M+ Y+++P+I+HY CMVD LGR G +EEAE+L+ +P+
Sbjct: 410 GVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPA 469
Query: 387 DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEE 446
D +I+ SLL AC++ G +E A++ A +++EL+ +S GY MSNLYA+ ++E+ ++
Sbjct: 470 DEASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWEKVIDG 529
Query: 447 RLLMKEVKIEK 457
R M+ ++ +
Sbjct: 530 RRNMRAERVNR 540
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 362 bits (930), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 187/506 (36%), Positives = 303/506 (59%), Gaps = 40/506 (7%)
Query: 1 MKDLKKIHAHLIKTGLAKD-PIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTII 59
++ LK+IHA ++ GL + + I + S G + YA+ +F +I KP++ I N ++
Sbjct: 25 IRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVL 84
Query: 60 RGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGL 119
RG +QS P + L+ +M + P R T+ + KA ++L +G HG+VV+ G
Sbjct: 85 RGSAQSMKPEKTVSLYTEM-EKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGF 143
Query: 120 EFDQFIHNTIIYMYANCGFL-------------------------------SEARLMFDE 148
++++ N +I +ANCG L EA +FDE
Sbjct: 144 VLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDE 203
Query: 149 VDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALEL 208
+ + D VAWN MI G KC E+D +R LFD+ ++ V+WN+MISGYV KEAL +
Sbjct: 204 MPYK-DQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGI 262
Query: 209 FREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFL-----VTNCFELNTIVVTAII 263
F+EM++ P T++SLL+ACA LG + G+ +H ++ V++ + T + A+I
Sbjct: 263 FKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALI 322
Query: 264 DMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYI 323
DMY KCG +RA++VF V + LS WN+++ GLA++ E +I++F +Q + P+ +
Sbjct: 323 DMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHHAEG-SIEMFEEMQRLKVWPNEV 381
Query: 324 SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRS 383
+FI V+ AC+HSG+V++ + YF+LM + Y I+P+IKHY CMVD LGRAG LEEA + S
Sbjct: 382 TFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVES 441
Query: 384 MPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEA 443
M +P+AI+W +LL AC+ +GN+E+ K A ++++ + K+ES YVL+SN+YA++ Q++
Sbjct: 442 MKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGV 501
Query: 444 MEERLLMKEVKIEKEPGCSLIEVDGE 469
+ R + + +++K G SLIE D +
Sbjct: 502 QKVRKMFDDTRVKKPTGVSLIEEDDD 527
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 361 bits (926), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 177/463 (38%), Positives = 284/463 (61%), Gaps = 2/463 (0%)
Query: 32 SPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTY 91
+ GD+ A VF + +L WN +I G+ + AI ++ ++ + ++P +T
Sbjct: 202 ASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVY-KLMESEGVKPDDVTM 260
Query: 92 PSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT 151
L + + LG G + + V + GL + N ++ M++ CG + EAR +FD ++
Sbjct: 261 IGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEK 320
Query: 152 EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFRE 211
+V+W +MI G A+CG +D SR+LFD M ++ V WN+MI G V+ + ++AL LF+E
Sbjct: 321 R-TIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQE 379
Query: 212 MQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGC 271
MQ N KP E TM+ L+AC++LGA+ G WIH ++ LN + T+++DMY KCG
Sbjct: 380 MQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGN 439
Query: 272 PERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTA 331
AL VF+ + + + +++ GLA++G + AI F+ + + + PD I+FI +L+A
Sbjct: 440 ISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSA 499
Query: 332 CNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAI 391
C H G + +DYF+ M + + P +KHYS MVD LGRAGLLEEA++L+ SMP + DA
Sbjct: 500 CCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAA 559
Query: 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451
+WG+LL CR HGN+E+ ++AAK+++ELD ++S YVL+ +Y + +E+A R +M
Sbjct: 560 VWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMN 619
Query: 452 EVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLG 494
E +EK PGCS IEV+G V EF+ + P++ ++Y L+ LG
Sbjct: 620 ERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLG 662
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 502 | ||||||
| 224082560 | 509 | predicted protein [Populus trichocarpa] | 0.996 | 0.982 | 0.752 | 0.0 | |
| 225446849 | 533 | PREDICTED: pentatricopeptide repeat-cont | 0.986 | 0.928 | 0.740 | 0.0 | |
| 255586940 | 533 | pentatricopeptide repeat-containing prot | 0.984 | 0.926 | 0.709 | 0.0 | |
| 356553601 | 534 | PREDICTED: pentatricopeptide repeat-cont | 0.990 | 0.930 | 0.667 | 0.0 | |
| 449467271 | 543 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.922 | 0.646 | 0.0 | |
| 357494311 | 542 | Pentatricopeptide repeat-containing prot | 0.992 | 0.918 | 0.648 | 0.0 | |
| 297824259 | 542 | pentatricopeptide repeat-containing prot | 0.980 | 0.907 | 0.643 | 0.0 | |
| 15228028 | 559 | pentatricopeptide repeat-containing prot | 0.980 | 0.880 | 0.639 | 0.0 | |
| 242033621 | 521 | hypothetical protein SORBIDRAFT_01g01407 | 0.942 | 0.907 | 0.468 | 1e-131 | |
| 414871822 | 522 | TPA: hypothetical protein ZEAMMB73_40148 | 0.942 | 0.906 | 0.466 | 1e-129 |
| >gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa] gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/502 (75%), Positives = 443/502 (88%), Gaps = 2/502 (0%)
Query: 1 MKDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIR 60
MKDL+KIHA LIKTGLAKD IAASR+LAFCTSPAGDINYAYLVFTQI+ PNLF+WNTIIR
Sbjct: 9 MKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIR 68
Query: 61 GFSQSSTPRNAILLFIDMLVTSPI-QPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGL 119
GFSQSSTP NAI LFIDM+ TSP QPQRLTYPS+FKAYAQLGLA +GAQLHGRV+K GL
Sbjct: 69 GFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGL 128
Query: 120 EFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFD 179
E DQFI NTI+ MY NCGFL EA+ +FD T FDVV WN+MIIGLAKCGEID+SRRLFD
Sbjct: 129 ENDQFIQNTILNMYVNCGFLGEAQRIFDGA-TGFDVVTWNTMIIGLAKCGEIDKSRRLFD 187
Query: 180 KMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQ 239
KM+ RNTVSWNSMISGYVR +F EA+ELF MQE+ IKPSEFTMVSLLNACA LGA+RQ
Sbjct: 188 KMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQ 247
Query: 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAM 299
GEWIH+++V N F LN+IV+TAIIDMY KCG ++ALQVF + PKKGLSCWNS++ GLAM
Sbjct: 248 GEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAM 307
Query: 300 NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIK 359
+G NEA++LFS L+SSNLKPD++SFI VLTACNH+G V++AKDYF LM+ETYKI+PSIK
Sbjct: 308 SGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIK 367
Query: 360 HYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419
HYSCMVD LGRAGLLEEAE+LI+SMP +PDAIIWGSLLS+CR++GNIEMAKQAAK++ EL
Sbjct: 368 HYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNEL 427
Query: 420 DKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRL 479
D NES ++L+SN+YAA FEEA+E+RL +KE +++KEPGCSLIEV+GEVHEFVAGGRL
Sbjct: 428 DPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEVNGEVHEFVAGGRL 487
Query: 480 HPKAPEVYLLLNDLGLLIQEMG 501
HP++ ++Y L+DLGL ++EMG
Sbjct: 488 HPRSKDIYHALDDLGLTLKEMG 509
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Vitis vinifera] gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/497 (74%), Positives = 431/497 (86%), Gaps = 2/497 (0%)
Query: 1 MKDLKKIHAHLIKTGLAKDPIAASRILAFC-TSPAGDINYAYLVFTQIKKPNLFIWNTII 59
MKDL+KIHAHL+KTGLAK P+A S +LAFC TSP GDINYAYLVFTQI PNLF WNTII
Sbjct: 37 MKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTII 96
Query: 60 RGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGL 119
RGFSQSSTP +AI LFIDML+ S +QP RLTYPS+FKAYAQLGLA GAQLHGRV+K GL
Sbjct: 97 RGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGL 156
Query: 120 EFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFD 179
+FD FI NTIIYMYANCGFLSE F E +FD+VAWNSMI+GLAKCGE+DESR+LFD
Sbjct: 157 QFDPFIRNTIIYMYANCGFLSEMWKAFYE-RMDFDIVAWNSMIMGLAKCGEVDESRKLFD 215
Query: 180 KMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQ 239
+M RNTVSWNSMISGYVRN + +EAL+LF +MQE+ IKPSEFTMVSLLNA A+LGA++Q
Sbjct: 216 EMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQ 275
Query: 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAM 299
GEWIH+++ N FELN IV +IIDMYCKCG A QVF P KGLS WN+M+ GLAM
Sbjct: 276 GEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAM 335
Query: 300 NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIK 359
NG ENEAI+LFS L+ SNL+PD ++F+ VLTACN+SG V++AK+YF+LM++TYKI+PSIK
Sbjct: 336 NGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIK 395
Query: 360 HYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419
HYSCMVD LGRAGLLEEAE+LIR+MP +PDAIIW SLLSACRKHGN+E+AK+AAK I++L
Sbjct: 396 HYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDL 455
Query: 420 DKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRL 479
D N+SCGYVL+SN+YAAS QFEEAME+RL MKE +IEKEPGCSLIEV+GE+HEFVAGGRL
Sbjct: 456 DGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEPGCSLIEVNGEIHEFVAGGRL 515
Query: 480 HPKAPEVYLLLNDLGLL 496
HP+A EVY LLN+LG++
Sbjct: 516 HPQAQEVYSLLNELGMM 532
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/495 (70%), Positives = 421/495 (85%), Gaps = 1/495 (0%)
Query: 1 MKDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIR 60
MKDLKKIH+ LIKTGLAKD AASRILAFC SPAGDINYAYLVF QI+ PN+F WNTIIR
Sbjct: 35 MKDLKKIHSQLIKTGLAKDTNAASRILAFCASPAGDINYAYLVFVQIQNPNIFAWNTIIR 94
Query: 61 GFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLE 120
GFS+SS P+N+I L+IDML+TSP+QPQRLTYPS+FKA+AQL LA +GAQLHG+++K GLE
Sbjct: 95 GFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQLHGKMIKLGLE 154
Query: 121 FDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDK 180
D FI NTI++MY NCGF SEAR +FD +FD+VAWN+MI+G+AKCG +DESRRLFDK
Sbjct: 155 NDSFIRNTILFMYVNCGFTSEARKVFDR-GMDFDIVAWNTMIMGVAKCGLVDESRRLFDK 213
Query: 181 MVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQG 240
M RN VSWNSMISGYVRN +F +ALELF++MQ + I+PSEFTMVSLLNACA LGAIRQG
Sbjct: 214 MSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQG 273
Query: 241 EWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMN 300
EWIH+++V FELN IVVTAIIDMY KCG ++A+QVF + P++GLSCWNSM+ GLAMN
Sbjct: 274 EWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMN 333
Query: 301 GYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKH 360
G ENEA++LFS LQSS+L+PD +SFIAVLTAC+H+G V++AKDYF LM + YKIKP IKH
Sbjct: 334 GQENEALQLFSVLQSSDLRPDDVSFIAVLTACDHTGMVDKAKDYFLLMRDKYKIKPGIKH 393
Query: 361 YSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420
+SCMVD LGRAGLLEEAE+LIRSM DPDAIIWGSLL +C K+GNI+MAK+AA +IEL+
Sbjct: 394 FSCMVDVLGRAGLLEEAEELIRSMHVDPDAIIWGSLLWSCCKYGNIKMAKRAANHLIELN 453
Query: 421 KNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLH 480
+ES +VL++N YAA+ FEEA++ERL +KE I KEPGCS IEV GEVHEFVAGGR H
Sbjct: 454 PSESSSFVLVANAYAAANNFEEALKERLTLKENHIGKEPGCSCIEVGGEVHEFVAGGRAH 513
Query: 481 PKAPEVYLLLNDLGL 495
P+ E+Y +L+ L L
Sbjct: 514 PEIKEIYRVLDVLTL 528
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/499 (66%), Positives = 412/499 (82%), Gaps = 2/499 (0%)
Query: 1 MKDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIR 60
MKDL+KIHAH+IKTGLA +AASR+L FC S +GDINYAYL+FT I PNL+ WNTIIR
Sbjct: 38 MKDLQKIHAHIIKTGLAHHTVAASRVLTFCASSSGDINYAYLLFTTIPSPNLYCWNTIIR 97
Query: 61 GFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLE 120
GFS+SSTP AI LF+DML +S + PQRLTYPS+FKAYAQLG DGAQLHGRVVK GLE
Sbjct: 98 GFSRSSTPHLAISLFVDMLCSS-VLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLE 156
Query: 121 FDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDK 180
DQFI NTIIYMYAN G LSEAR +FDE+ + DVVA NSMI+GLAKCGE+D+SRRLFD
Sbjct: 157 KDQFIQNTIIYMYANSGLLSEARRVFDEL-VDLDVVACNSMIMGLAKCGEVDKSRRLFDN 215
Query: 181 MVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQG 240
M +R V+WNSMISGYVRN + EALELFR+MQ + ++PSEFTMVSLL+ACA LGA++ G
Sbjct: 216 MPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHG 275
Query: 241 EWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMN 300
EW+H+++ FELN IV+TAIIDMYCKCG +A++VF P +GLSCWNS++ GLA+N
Sbjct: 276 EWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSIIIGLALN 335
Query: 301 GYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKH 360
GYE +AI+ FS L++S+LKPD++SFI VLTAC + G V +A+DYF+LM Y+I+PSIKH
Sbjct: 336 GYERKAIEYFSKLEASDLKPDHVSFIGVLTACKYIGAVGKARDYFSLMMNKYEIEPSIKH 395
Query: 361 YSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420
Y+CMV+ LG+A LLEEAE+LI+ MP D IIWGSLLS+CRKHGN+E+AK+AA+++ EL+
Sbjct: 396 YTCMVEVLGQAALLEEAEQLIKGMPLKADFIIWGSLLSSCRKHGNVEIAKRAAQRVCELN 455
Query: 421 KNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLH 480
+++ GY+LMSN+ AAS QFEEAME+R+LM+E EKEPGCS IE+ GEVHEF+AGGRLH
Sbjct: 456 PSDASGYLLMSNVQAASNQFEEAMEQRILMRERLAEKEPGCSSIELYGEVHEFLAGGRLH 515
Query: 481 PKAPEVYLLLNDLGLLIQE 499
PKA E+Y LLND +Q+
Sbjct: 516 PKAREIYYLLNDSSFALQD 534
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic-like [Cucumis sativus] gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/503 (64%), Positives = 409/503 (81%), Gaps = 2/503 (0%)
Query: 1 MKDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIR 60
M+DL++ HAHLIK+G A + AASRILAFC SP G+++YAYLVF Q++ PNLF WNT+IR
Sbjct: 37 MRDLQQFHAHLIKSGQAIESFAASRILAFCASPLGNMDYAYLVFLQMQNPNLFSWNTVIR 96
Query: 61 GFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLE 120
GFSQSS P+ A+ LFIDMLV+S ++PQRLTYPS+FKAY+QLGLA DGAQLHGR++K GL+
Sbjct: 97 GFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAHDGAQLHGRIIKLGLQ 156
Query: 121 FDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDK 180
FD FI NTI+YMYA GFLSEAR +F++ + EFDVV+WNSMI+GLAKCGEIDESR+LFDK
Sbjct: 157 FDPFIRNTILYMYATGGFLSEARRIFNQ-EMEFDVVSWNSMILGLAKCGEIDESRKLFDK 215
Query: 181 MVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQG 240
M +N +SWNSMI GYVRN FKEAL+LF +MQE+ I+PSEFTMVSLLNA A++GA+RQG
Sbjct: 216 MPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQG 275
Query: 241 EWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMN 300
WIH ++ N +LN IVVTAIIDMYCKCG ALQVF +P + LS WNSM+FGLA+N
Sbjct: 276 VWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAVN 335
Query: 301 GYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKH 360
G E EAI +F L+SS+LKPD ISF+AVLTACNH V++ ++F+ M TY+I+PSIKH
Sbjct: 336 GCEKEAILVFKMLESSSLKPDCISFMAVLTACNHGAMVDEGMEFFSRMKNTYRIEPSIKH 395
Query: 361 YSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420
Y+ MVD + RAG LEEAE+ I++MP + DAIIWG LLSACR +GN EMAK+AA+++ ELD
Sbjct: 396 YNLMVDMISRAGFLEEAEQFIKTMPIEKDAIIWGCLLSACRIYGNTEMAKRAAEKVNELD 455
Query: 421 KNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVA-GGRL 479
E+ GYVLM+N++A F AME+R+ M+ K+EKEPG S IEVD EVHEF+A GGRL
Sbjct: 456 PEETMGYVLMANIHAWGNNFVGAMEKRVAMRMKKVEKEPGGSFIEVDEEVHEFIAGGGRL 515
Query: 480 HPKAPEVYLLLNDLGLLIQEMGS 502
H KA E+Y++L LG+++Q+ G+
Sbjct: 516 HRKAQEIYIVLGQLGVMLQDKGA 538
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/503 (64%), Positives = 402/503 (79%), Gaps = 5/503 (0%)
Query: 1 MKDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIR 60
+ +I+ H+IKTGL +PIA++R L FC SP+G+INYAY +F ++ PNL+ WNTIIR
Sbjct: 41 INHFHQIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKLFVRMPNPNLYSWNTIIR 100
Query: 61 GFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLE 120
FS+SSTP+ AI LF+DML S IQPQ LTYPS+FKAYAQLG A GAQLHGRVVK GL+
Sbjct: 101 AFSRSSTPQFAISLFVDMLY-SQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQ 159
Query: 121 FDQFIHNTIIYMYANCGFLSEARLMFDEVDTEF---DVVAWNSMIIGLAKCGEIDESRRL 177
DQFI NTIIYMYAN G +SEAR +FD E DVVA NSMI+G AKCGEIDESR L
Sbjct: 160 NDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNL 219
Query: 178 FDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAI 237
FD M++R +VSWNSMISGYVRN K EALELF +MQ + + SEFTMVSLLNACA LGA+
Sbjct: 220 FDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGAL 279
Query: 238 RQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGL 297
+ G+W+H+++ N FELN IVVTAIIDMYCKCG E A++VF T P++GLSCWNS++ GL
Sbjct: 280 QHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGL 339
Query: 298 AMNGYENEAIKLFSGLQSSNL-KPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP 356
AMNG+E EA + FS L+SS L KPD +SFI VLTAC H G +N+A+DYF LM Y+I+P
Sbjct: 340 AMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFELMMNKYEIEP 399
Query: 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQI 416
SIKHY+C+VD LG+AGLLEEAE+LI+ MP PDAIIWGSLLS+CRKH N+++A++AA+++
Sbjct: 400 SIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWGSLLSSCRKHRNVQIARRAAQRV 459
Query: 417 IELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAG 476
EL+ +++ GYVLMSN++AAS +FEEA+E+RLLMKE EKEPGCS IE+ GEVHEF+AG
Sbjct: 460 YELNPSDASGYVLMSNVHAASNKFEEAIEQRLLMKENLTEKEPGCSSIELYGEVHEFIAG 519
Query: 477 GRLHPKAPEVYLLLNDLGLLIQE 499
GRLHPK E+Y LLND Q+
Sbjct: 520 GRLHPKTQEIYHLLNDSSFAFQD 542
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/494 (64%), Positives = 393/494 (79%), Gaps = 2/494 (0%)
Query: 1 MKDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIR 60
M++LK+IHA+LIKTGL D +AASR+LAFC + D NYAYLVFT+I N F+WNTIIR
Sbjct: 38 MRELKQIHANLIKTGLISDTVAASRVLAFCCASPSDRNYAYLVFTRINHKNPFVWNTIIR 97
Query: 61 GFSQSSTPRNAILLFIDMLVTSP-IQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGL 119
GFS+SS P AI +FIDML +SP ++PQRLTYPS+FKAYA LGLARDG QLHGRV+K+GL
Sbjct: 98 GFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGRVIKEGL 157
Query: 120 EFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFD 179
E D FI NT+++MY CG L EA +F + FDVVAWNS+I+GLAKCG ID++++LFD
Sbjct: 158 EDDSFIRNTMLHMYVTCGCLVEAWRLFVGM-MGFDVVAWNSIIMGLAKCGLIDQAQKLFD 216
Query: 180 KMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQ 239
+M RN VSWNSMISG+VRN +FK+ALE+FREMQE+++KP FTMVSLLNACA LGA Q
Sbjct: 217 EMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQ 276
Query: 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAM 299
G WIH ++V N FELN+IV+TA+IDMYCKCGC E L+VF P K LSCWNSM+ GLA
Sbjct: 277 GRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQLSCWNSMILGLAN 336
Query: 300 NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIK 359
NG E A+ LF L+ + L+PD +SFI VLTAC HSG+V++A ++F LM E Y I+PSIK
Sbjct: 337 NGCEERAMDLFLELERTGLEPDSVSFIGVLTACAHSGEVHKAGEFFRLMREKYMIEPSIK 396
Query: 360 HYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419
HY+CMV+ LG AGLL+EAE LI+ MP + D IIW SLL+ACRK+GN+EMAK+AA + L
Sbjct: 397 HYTCMVNVLGGAGLLDEAEALIKKMPVEGDTIIWSSLLAACRKNGNVEMAKRAANCLKNL 456
Query: 420 DKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRL 479
D +E+CGYVLMSN YA+ FEEA+E+RLLMKE ++EKE GCS IEVD EVHEFV+ G+
Sbjct: 457 DPDETCGYVLMSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFVSCGKK 516
Query: 480 HPKAPEVYLLLNDL 493
HPK+ E+Y LL L
Sbjct: 517 HPKSTEIYSLLGIL 530
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g42920, chloroplastic; Flags: Precursor gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana] gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana] gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana] gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/494 (63%), Positives = 391/494 (79%), Gaps = 2/494 (0%)
Query: 1 MKDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIR 60
M++LK+IHA LIKTGL D + ASR+LAFC + D+NYAYLVFT+I N F+WNTIIR
Sbjct: 38 MRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIR 97
Query: 61 GFSQSSTPRNAILLFIDMLVTSP-IQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGL 119
GFS+SS P AI +FIDML +SP ++PQRLTYPS+FKAY +LG ARDG QLHG V+K+GL
Sbjct: 98 GFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGL 157
Query: 120 EFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFD 179
E D FI NT+++MY CG L EA +F + FDVVAWNSMI+G AKCG ID+++ LFD
Sbjct: 158 EDDSFIRNTMLHMYVTCGCLIEAWRIFLGM-IGFDVVAWNSMIMGFAKCGLIDQAQNLFD 216
Query: 180 KMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQ 239
+M RN VSWNSMISG+VRN +FK+AL++FREMQE+++KP FTMVSLLNACA LGA Q
Sbjct: 217 EMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQ 276
Query: 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAM 299
G WIH ++V N FELN+IVVTA+IDMYCKCGC E L VF PKK LSCWNSM+ GLA
Sbjct: 277 GRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLAN 336
Query: 300 NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIK 359
NG+E A+ LFS L+ S L+PD +SFI VLTAC HSG+V++A ++F LM E Y I+PSIK
Sbjct: 337 NGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIK 396
Query: 360 HYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419
HY+ MV+ LG AGLLEEAE LI++MP + D +IW SLLSACRK GN+EMAK+AAK + +L
Sbjct: 397 HYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKL 456
Query: 420 DKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRL 479
D +E+CGYVL+SN YA+ FEEA+E+RLLMKE ++EKE GCS IEVD EVHEF++ G
Sbjct: 457 DPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFISCGGT 516
Query: 480 HPKAPEVYLLLNDL 493
HPK+ E+Y LL+ L
Sbjct: 517 HPKSAEIYSLLDIL 530
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242033621|ref|XP_002464205.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor] gi|241918059|gb|EER91203.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/478 (46%), Positives = 307/478 (64%), Gaps = 5/478 (1%)
Query: 1 MKDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIR 60
M L+++HA L+K+GLAKDPIAASR +AFC P D++YA + +PN F+WNT+IR
Sbjct: 46 MAHLRQLHAALVKSGLAKDPIAASRAVAFCAGPGRDVSYAERLVRHHPRPNSFMWNTVIR 105
Query: 61 GFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLE 120
S + P A+ LF+DML SP P+R T PSL AYA+LG A DGA LHG +K GL
Sbjct: 106 ALSDGARPEAAVALFVDML-GSPTPPERRTLPSLLAAYARLGRAGDGAALHGMALKLGLA 164
Query: 121 FDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDK 180
D ++ N I MYA+C EA +F + EFD VA NS I+ LA+ G +DE+R +FD
Sbjct: 165 GDAYVRNATIAMYASCARADEALALFGQC-PEFDAVACNSAIVALARAGRVDEARAVFDG 223
Query: 181 MVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQG 240
M R +W++M+S Y R + EAL LF MQ ++P+ +VS+L CA LGA+ QG
Sbjct: 224 MPERTVATWSAMVSAYARAARCGEALALFSAMQADGVEPNANVLVSVLGCCASLGALDQG 283
Query: 241 EWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGL 297
W+H ++ + +N +VVTA++DMYCKCG + A QVF+ +G LS WNSM+ GL
Sbjct: 284 AWVHAYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQGSAKLSSWNSMMQGL 343
Query: 298 AMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS 357
A++G EA+ LFS L+S L PD ++FIAVLTA H+G ++A+ F M + ++P
Sbjct: 344 AVHGQWREAVALFSELRSYGLSPDNVTFIAVLTAYGHAGMPDEAQAAFASMATEHSVEPG 403
Query: 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQII 417
I+HY C+VDAL RAG L EAE IRSMP PDA +WG+LLS CR HG+ E+ +AA++ +
Sbjct: 404 IEHYGCLVDALARAGRLREAEDAIRSMPMAPDAAVWGALLSGCRLHGDAELGARAAREAV 463
Query: 418 ELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVA 475
D +S YVL +++ A R M+E + K PGCS+IEV+G VHEFV+
Sbjct: 464 RCDPRDSGAYVLAASVLARGGNPGRGAGVRGRMREAGVGKVPGCSMIEVNGVVHEFVS 521
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414871822|tpg|DAA50379.1| TPA: hypothetical protein ZEAMMB73_401482 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/478 (46%), Positives = 308/478 (64%), Gaps = 5/478 (1%)
Query: 1 MKDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIR 60
M L+++HA L+K+GLAKDPIAASR +AFC P D+ YA + +PN F+WNT+IR
Sbjct: 47 MAHLRQLHAALVKSGLAKDPIAASRAVAFCAGPGRDVLYAERLVRHHPRPNSFMWNTVIR 106
Query: 61 GFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLE 120
S + P A+ LF+DML +SP P R ++PSL AYA+LG A DG LHG +K GL
Sbjct: 107 ALSDGARPDAAVALFVDML-SSPTPPDRRSFPSLLAAYARLGRAGDGEALHGMALKLGLA 165
Query: 121 FDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDK 180
D ++ N I MYA+CG EA +F + E DVVA NS+I+ LA+ G +DE+R +FD
Sbjct: 166 GDAYVRNATIAMYASCGRADEALALFGQC-PELDVVACNSVIVALARAGRVDEARSVFDA 224
Query: 181 MVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQG 240
M R +W++M+S Y R + EAL LF MQ ++P+ +VS+L CA LGA+ QG
Sbjct: 225 MPERTVATWSAMVSAYARAARCSEALALFSAMQADGMEPNANVLVSVLGCCASLGALVQG 284
Query: 241 EWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL---SCWNSMVFGL 297
W+H ++ + +N +VVTA++DMYCKCG + A QVF+ +GL S WNSM+ GL
Sbjct: 285 AWVHEYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQGLAKLSSWNSMMQGL 344
Query: 298 AMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS 357
A++G EA+ LFS L+S L PD ++FIAVLTA HSG ++A+ F M+ + ++P
Sbjct: 345 AVHGQWREAVALFSELKSYGLSPDNVTFIAVLTAYGHSGMPDEAQAAFASMSSEHGVEPG 404
Query: 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQII 417
I+HY C+VDAL RAG L EAE IR+MP PDA IWG+LLS CR HG+ E+ +AA++ +
Sbjct: 405 IEHYGCLVDALARAGRLREAEDAIRAMPMAPDAAIWGALLSGCRLHGDAELGARAAREAV 464
Query: 418 ELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVA 475
D +S YVL +++ A R M+E + K PG S+IEV+G VHEFV+
Sbjct: 465 RCDPRDSGAYVLAASVLARGGDPGRGAGIRGRMREAGVGKVPGSSMIEVNGVVHEFVS 522
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 502 | ||||||
| TAIR|locus:2045580 | 559 | AT2G42920 [Arabidopsis thalian | 0.978 | 0.878 | 0.638 | 6.4e-170 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.962 | 0.779 | 0.422 | 3.9e-108 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.912 | 0.708 | 0.412 | 9.5e-105 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 0.960 | 0.774 | 0.382 | 3.7e-96 | |
| TAIR|locus:2081635 | 573 | AT3G62890 [Arabidopsis thalian | 0.922 | 0.808 | 0.417 | 1.4e-94 | |
| TAIR|locus:2093920 | 687 | AT3G15930 "AT3G15930" [Arabido | 0.968 | 0.707 | 0.388 | 4.3e-93 | |
| TAIR|locus:2054789 | 534 | MEF21 "mitochondrial editing f | 0.964 | 0.906 | 0.376 | 9e-93 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.984 | 0.708 | 0.368 | 2.4e-92 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.968 | 0.658 | 0.361 | 3.9e-92 | |
| TAIR|locus:2041198 | 681 | SLO1 "SLOW GROWTH 1" [Arabidop | 0.912 | 0.672 | 0.384 | 1.3e-91 |
| TAIR|locus:2045580 AT2G42920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1652 (586.6 bits), Expect = 6.4e-170, P = 6.4e-170
Identities = 316/495 (63%), Positives = 391/495 (78%)
Query: 1 MKDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIR 60
M++LK+IHA LIKTGL D + ASR+LAFC + D+NYAYLVFT+I N F+WNTIIR
Sbjct: 38 MRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIR 97
Query: 61 GFSQSSTPRNAILLFIDMLVTSP-IQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGL 119
GFS+SS P AI +FIDML +SP ++PQRLTYPS+FKAY +LG ARDG QLHG V+K+GL
Sbjct: 98 GFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGL 157
Query: 120 EFDQFIHNTIIYMYANCGFLSEA-RLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLF 178
E D FI NT+++MY CG L EA R+ + FDVVAWNSMI+G AKCG ID+++ LF
Sbjct: 158 EDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIG--FDVVAWNSMIMGFAKCGLIDQAQNLF 215
Query: 179 DKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIR 238
D+M RN VSWNSMISG+VRN +FK+AL++FREMQE+++KP FTMVSLLNACA LGA
Sbjct: 216 DEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASE 275
Query: 239 QGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLA 298
QG WIH ++V N FELN+IVVTA+IDMYCKCGC E L VF PKK LSCWNSM+ GLA
Sbjct: 276 QGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLA 335
Query: 299 MNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSI 358
NG+E A+ LFS L+ S L+PD +SFI VLTAC HSG+V++A ++F LM E Y I+PSI
Sbjct: 336 NNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSI 395
Query: 359 KHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418
KHY+ MV+ LG AGLLEEAE LI++MP + D +IW SLLSACRK GN+EMAK+AAK + +
Sbjct: 396 KHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKK 455
Query: 419 LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGR 478
LD +E+CGYVL+SN YA+ FEEA+E+RLLMKE ++EKE GCS IEVD EVHEF++ G
Sbjct: 456 LDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFISCGG 515
Query: 479 LHPKAPEVYLLLNDL 493
HPK+ E+Y LL+ L
Sbjct: 516 THPKSAEIYSLLDIL 530
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1069 (381.4 bits), Expect = 3.9e-108, P = 3.9e-108
Identities = 206/487 (42%), Positives = 313/487 (64%)
Query: 2 KDLKKIHAHLIKTGLAKDPIAASRILAFC-TSPAGD-INYAYLVFTQIKKPNLFIWNTII 59
++LK+IHA ++KTGL +D A ++ L+FC +S + D + YA +VF +P+ F+WN +I
Sbjct: 28 EELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMI 87
Query: 60 RGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGL 119
RGFS S P ++LL+ ML +S T+PSL KA + L + Q+H ++ K G
Sbjct: 88 RGFSCSDEPERSLLLYQRMLCSSAPH-NAYTFPSLLKACSNLSAFEETTQIHAQITKLGY 146
Query: 120 EFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFD 179
E D + N++I YA G A L+FD + E D V+WNS+I G K G++D + LF
Sbjct: 147 ENDVYAVNSLINSYAVTGNFKLAHLLFDRIP-EPDDVSWNSVIKGYVKAGKMDIALTLFR 205
Query: 180 KMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQ 239
KM +N +SW +MISGYV+ KEAL+LF EMQ +++P ++ + L+ACA+LGA+ Q
Sbjct: 206 KMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQ 265
Query: 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAM 299
G+WIH++L +++++ +IDMY KCG E AL+VF + KK + W +++ G A
Sbjct: 266 GKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAY 325
Query: 300 NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIK 359
+G+ EAI F +Q +KP+ I+F AVLTAC+++G V + K F M Y +KP+I+
Sbjct: 326 HGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIE 385
Query: 360 HYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419
HY C+VD LGRAGLL+EA++ I+ MP P+A+IWG+LL ACR H NIE+ ++ + +I +
Sbjct: 386 HYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAI 445
Query: 420 DKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRL 479
D YV +N++A ++++A E R LMKE + K PGCS I ++G HEF+AG R
Sbjct: 446 DPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRS 505
Query: 480 HPKAPEV 486
HP+ ++
Sbjct: 506 HPEIEKI 512
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 195/473 (41%), Positives = 308/473 (65%)
Query: 36 DINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRN--AILLFIDMLVTSPIQPQRLTYPS 93
D++YA+ +F Q+ + N F WNTIIRGFS+S + AI LF +M+ ++P R T+PS
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 94 LFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMF------- 146
+ KA A+ G ++G Q+HG +K G D+F+ + ++ MY CGF+ +AR++F
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193
Query: 147 ------DEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNV 200
D + ++V WN MI G + G+ +R LFDKM R+ VSWN+MISGY N
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG 253
Query: 201 KFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVT 260
FK+A+E+FREM++ +I+P+ T+VS+L A ++LG++ GEW+H + + ++ ++ +
Sbjct: 254 FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGS 313
Query: 261 AIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP 320
A+IDMY KCG E+A+ VF +P++ + W++M+ G A++G +AI F ++ + ++P
Sbjct: 314 ALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRP 373
Query: 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKL 380
+++I +LTAC+H G V + + YF+ M ++P I+HY CMVD LGR+GLL+EAE+
Sbjct: 374 SDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEF 433
Query: 381 IRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQF 440
I +MP PD +IW +LL ACR GN+EM K+ A ++++ ++S YV +SN+YA+ +
Sbjct: 434 ILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNW 493
Query: 441 EEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDL 493
E E RL MKE I K+PGCSLI++DG +HEFV HPKA E+ +L ++
Sbjct: 494 SEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEI 546
|
|
| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
Identities = 188/491 (38%), Positives = 309/491 (62%)
Query: 3 DLKKIHAHLIKTGLAKDPIAASRILAFCTS------PAGDINYAYLVFTQIKKPNLFIWN 56
DLK IH L++T L D ASR+LA C P + YAY +F+QI+ PNLF++N
Sbjct: 27 DLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFN 86
Query: 57 TIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVK 116
+IR FS + P A + ML S I P +T+P L KA +++ G Q H ++V+
Sbjct: 87 LLIRCFSTGAEPSKAFGFYTQML-KSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVR 145
Query: 117 QGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRR 176
G + D ++ N++++MYANCGF++ A +F ++ DVV+W SM+ G KCG ++ +R
Sbjct: 146 FGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFR-DVVSWTSMVAGYCKCGMVENARE 204
Query: 177 LFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGA 236
+FD+M RN +W+ MI+GY +N F++A++LF M+ + + +E MVS++++CA LGA
Sbjct: 205 MFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGA 264
Query: 237 IRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFG 296
+ GE + ++V + +N I+ TA++DM+ +CG E+A+ VF +P+ W+S++ G
Sbjct: 265 LEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKG 324
Query: 297 LAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP 356
LA++G+ ++A+ FS + S P ++F AVL+AC+H G V + + + M + + I+P
Sbjct: 325 LAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEP 384
Query: 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQI 416
++HY C+VD LGRAG L EAE I M P+A I G+LL AC+ + N E+A++ +
Sbjct: 385 RLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNML 444
Query: 417 IELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAG 476
I++ S YVL+SN+YA + Q+++ R +MKE ++K PG SLIE+DG++++F G
Sbjct: 445 IKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMG 504
Query: 477 G-RLHPKAPEV 486
+ HP+ ++
Sbjct: 505 DDQKHPEMGKI 515
|
|
| TAIR|locus:2081635 AT3G62890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 201/482 (41%), Positives = 309/482 (64%)
Query: 34 AGDINYAYLVFTQIKKPNL--FIWNTIIRGFSQS-STPR--NAILLFIDMLVTSPIQPQR 88
A I YA +F I+ L F+WN IIR + S+P+ + I +++ M + P
Sbjct: 5 AAIIAYANPIF-HIRHLKLESFLWNIIIRAIVHNVSSPQRHSPISVYLRMR-NHRVSPDF 62
Query: 89 LTYPSLFKAYAQ-LGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFD 147
T+P L ++ L L G + H +++ GL+ D F+ +++ MY++CG L A+ +FD
Sbjct: 63 HTFPFLLPSFHNPLHLPL-GQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFD 121
Query: 148 EVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALE 207
+ ++ D+ AWNS++ AK G ID++R+LFD+M RN +SW+ +I+GYV K+KEAL+
Sbjct: 122 DSGSK-DLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALD 180
Query: 208 LFREMQ-----EQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAI 262
LFREMQ E ++P+EFTM ++L+AC +LGA+ QG+W+H ++ E++ ++ TA+
Sbjct: 181 LFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTAL 240
Query: 263 IDMYCKCGCPERALQVFNTV-PKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS-NLKP 320
IDMY KCG ERA +VFN + KK + +++M+ LAM G +E +LFS + +S N+ P
Sbjct: 241 IDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINP 300
Query: 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKL 380
+ ++F+ +L AC H G +N+ K YF +M E + I PSI+HY CMVD GR+GL++EAE
Sbjct: 301 NSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESF 360
Query: 381 IRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQF 440
I SMP +PD +IWGSLLS R G+I+ + A K++IELD S YVL+SN+YA + ++
Sbjct: 361 IASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRW 420
Query: 441 EEAMEERLLMKEVK-IEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQE 499
E R M EVK I K PGCS +EV+G VHEFV G ++ +Y +L+++ ++E
Sbjct: 421 MEVKCIRHEM-EVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLRE 479
Query: 500 MG 501
G
Sbjct: 480 AG 481
|
|
| TAIR|locus:2093920 AT3G15930 "AT3G15930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
Identities = 190/489 (38%), Positives = 301/489 (61%)
Query: 5 KKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQ 64
KK+H H++K GL + + L S G ++ A VF + K ++F WN +I G+++
Sbjct: 155 KKLHCHVVKFGLGSN-LYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNR 213
Query: 65 SSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQF 124
+I L ++M + + P +T + A +++ ++H V + E
Sbjct: 214 MKEYEESIELLVEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLR 272
Query: 125 IHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSR 184
+ N ++ YA CG + A +F + DV++W S++ G + G + +R FD+M R
Sbjct: 273 LENALVNAYAACGEMDIAVRIFRSMKAR-DVISWTSIVKGYVERGNLKLARTYFDQMPVR 331
Query: 185 NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIH 244
+ +SW MI GY+R F E+LE+FREMQ + P EFTMVS+L ACA LG++ GEWI
Sbjct: 332 DRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIK 391
Query: 245 NFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYEN 304
++ N + + +V A+IDMY KCGC E+A +VF+ + ++ W +MV GLA NG
Sbjct: 392 TYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQ 451
Query: 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCM 364
EAIK+F +Q +++PD I+++ VL+ACNHSG V+QA+ +F M ++I+PS+ HY CM
Sbjct: 452 EAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCM 511
Query: 365 VDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424
VD LGRAGL++EA +++R MP +P++I+WG+LL A R H + MA+ AAK+I+EL+ +
Sbjct: 512 VDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNG 571
Query: 425 CGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAP 484
Y L+ N+YA ++++ E R + +V I+K PG SLIEV+G HEFVAG + H ++
Sbjct: 572 AVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSE 631
Query: 485 EVYLLLNDL 493
E+Y+ L +L
Sbjct: 632 EIYMKLEEL 640
|
|
| TAIR|locus:2054789 MEF21 "mitochondrial editing factor 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 183/486 (37%), Positives = 302/486 (62%)
Query: 5 KKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQ 64
KKI+A +I GL++ ++++ FC D++YA +F Q+ PN+F++N+IIR ++
Sbjct: 27 KKINASIIIHGLSQSSFMVTKMVDFCDK-IEDMDYATRLFNQVSNPNVFLYNSIIRAYTH 85
Query: 65 SSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQF 124
+S + I ++ +L S P R T+P +FK+ A LG G Q+HG + K G F
Sbjct: 86 NSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVV 145
Query: 125 IHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSR 184
N +I MY L +A +FDE+ E DV++WNS++ G A+ G++ +++ LF M+ +
Sbjct: 146 TENALIDMYMKFDDLVDAHKVFDEM-YERDVISWNSLLSGYARLGQMKKAKGLFHLMLDK 204
Query: 185 NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIH 244
VSW +MISGY + EA++ FREMQ I+P E +++S+L +CA+LG++ G+WIH
Sbjct: 205 TIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIH 264
Query: 245 NFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYEN 304
+ F T V A+I+MY KCG +A+Q+F + K + W++M+ G A +G +
Sbjct: 265 LYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAH 324
Query: 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCM 364
AI+ F+ +Q + +KP+ I+F+ +L+AC+H G + YF +M + Y+I+P I+HY C+
Sbjct: 325 GAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCL 384
Query: 365 VDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424
+D L RAG LE A ++ ++MP PD+ IWGSLLS+CR GN+++A A ++EL+ +
Sbjct: 385 IDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDM 444
Query: 425 CGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAP 484
YVL++N+YA ++E+ R +++ ++K PG SLIEV+ V EFV+G P
Sbjct: 445 GNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGDNSKPFWT 504
Query: 485 EVYLLL 490
E+ ++L
Sbjct: 505 EISIVL 510
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
Identities = 188/510 (36%), Positives = 299/510 (58%)
Query: 1 MKDLKK---IHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNT 57
+ D+ K +H+ + K+ D S ++ S G++N A VF ++ N+ WN+
Sbjct: 165 LNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMY-SKCGNVNDAQRVFDEMGDRNVVSWNS 223
Query: 58 IIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQ 117
+I F Q+ A+ +F M++ S ++P +T S+ A A L + G ++HGRVVK
Sbjct: 224 LITCFEQNGPAVEALDVF-QMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKN 282
Query: 118 G-LEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRR 176
L D + N + MYA C + EAR +FD + +V+A SMI G A +R
Sbjct: 283 DKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR-NVIAETSMISGYAMAASTKAARL 341
Query: 177 LFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGA 236
+F KM RN VSWN++I+GY +N + +EAL LF ++ +++ P+ ++ ++L ACA L
Sbjct: 342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAE 401
Query: 237 IRQGEWIHNFLVTNCFELNT------IVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCW 290
+ G H ++ + F+ + V ++IDMY KCGC E VF + ++ W
Sbjct: 402 LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSW 461
Query: 291 NSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTE 350
N+M+ G A NGY NEA++LF + S KPD+I+ I VL+AC H+G V + + YF+ MT
Sbjct: 462 NAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTR 521
Query: 351 TYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAK 410
+ + P HY+CMVD LGRAG LEEA+ +I MP PD++IWGSLL+AC+ H NI + K
Sbjct: 522 DFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGK 581
Query: 411 QAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEV 470
A++++E++ + S YVL+SN+YA ++E+ M R M++ + K+PGCS I++ G
Sbjct: 582 YVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHD 641
Query: 471 HEFVAGGRLHPKAPEVYLLLNDLGLLIQEM 500
H F+ + HP+ +++ LL+ +LI EM
Sbjct: 642 HVFMVKDKSHPRKKQIHSLLD---ILIAEM 668
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
Identities = 177/490 (36%), Positives = 302/490 (61%)
Query: 5 KKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQ 64
+ +H +K+ + D A+ ++ C GD++ A VFT IK+ ++ WN++I GF Q
Sbjct: 151 QSLHGMAVKSAVGSDVFVANSLI-HCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ 209
Query: 65 SSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQF 124
+P A+ LF M + ++ +T + A A++ G Q+ + + + +
Sbjct: 210 KGSPDKALELFKKM-ESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLT 268
Query: 125 IHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSR 184
+ N ++ MY CG + +A+ +FD ++ E D V W +M+ G A + + +R + + M +
Sbjct: 269 LANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYEAAREVLNSMPQK 327
Query: 185 NTVSWNSMISGYVRNVKFKEALELFREMQ-EQNIKPSEFTMVSLLNACAKLGAIRQGEWI 243
+ V+WN++IS Y +N K EAL +F E+Q ++N+K ++ T+VS L+ACA++GA+ G WI
Sbjct: 328 DIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWI 387
Query: 244 HNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYE 303
H+++ + +N V +A+I MY KCG E++ +VFN+V K+ + W++M+ GLAM+G
Sbjct: 388 HSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCG 447
Query: 304 NEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSC 363
NEA+ +F +Q +N+KP+ ++F V AC+H+G V++A+ F M Y I P KHY+C
Sbjct: 448 NEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYAC 507
Query: 364 MVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE 423
+VD LGR+G LE+A K I +MP P +WG+LL AC+ H N+ +A+ A +++EL+
Sbjct: 508 IVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRN 567
Query: 424 SCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKA 483
+VL+SN+YA ++E E R M+ ++KEPGCS IE+DG +HEF++G HP +
Sbjct: 568 DGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMS 627
Query: 484 PEVYLLLNDL 493
+VY L+++
Sbjct: 628 EKVYGKLHEV 637
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| TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
Identities = 177/460 (38%), Positives = 283/460 (61%)
Query: 35 GDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSL 94
GD+ A VF + +L WN +I G+ + AI ++ ++ + ++P +T L
Sbjct: 205 GDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVY-KLMESEGVKPDDVTMIGL 263
Query: 95 FKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFD 154
+ + LG G + + V + GL + N ++ M++ CG + EAR +FD ++
Sbjct: 264 VSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKR-T 322
Query: 155 VVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQE 214
+V+W +MI G A+CG +D SR+LFD M ++ V WN+MI G V+ + ++AL LF+EMQ
Sbjct: 323 IVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQT 382
Query: 215 QNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPER 274
N KP E TM+ L+AC++LGA+ G WIH ++ LN + T+++DMY KCG
Sbjct: 383 SNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISE 442
Query: 275 ALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH 334
AL VF+ + + + +++ GLA++G + AI F+ + + + PD I+FI +L+AC H
Sbjct: 443 ALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCH 502
Query: 335 SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWG 394
G + +DYF+ M + + P +KHYS MVD LGRAGLLEEA++L+ SMP + DA +WG
Sbjct: 503 GGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWG 562
Query: 395 SLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454
+LL CR HGN+E+ ++AAK+++ELD ++S YVL+ +Y + +E+A R +M E
Sbjct: 563 ALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERG 622
Query: 455 IEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLG 494
+EK PGCS IEV+G V EF+ + P++ ++Y L+ LG
Sbjct: 623 VEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLG 662
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SJG6 | PP200_ARATH | No assigned EC number | 0.6396 | 0.9800 | 0.8801 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pm.C_LG_V000465 | hypothetical protein (509 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 502 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-101 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-100 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-50 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-44 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-41 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-31 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.002 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 318 bits (816), Expect = e-101
Identities = 160/497 (32%), Positives = 265/497 (53%), Gaps = 34/497 (6%)
Query: 5 KKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQ 64
K ++ H+ +G D +R+L G + A +F ++ + NL W TII G
Sbjct: 143 KAVYWHVESSGFEPDQYMMNRVLLMHVK-CGMLIDARRLFDEMPERNLASWGTIIGGLVD 201
Query: 65 SSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQF 124
+ R A LF +M R T+ + +A A LG AR G QLH V+K G+ D F
Sbjct: 202 AGNYREAFALFREMWEDGSDAEPR-TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260
Query: 125 IHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSR 184
+ +I MY+ KCG+I+++R +FD M +
Sbjct: 261 VSCALIDMYS--------------------------------KCGDIEDARCVFDGMPEK 288
Query: 185 NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIH 244
TV+WNSM++GY + +EAL L+ EM++ + +FT ++ ++L + + H
Sbjct: 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348
Query: 245 NFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYEN 304
L+ F L+ + TA++D+Y K G E A VF+ +P+K L WN+++ G +G
Sbjct: 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGT 408
Query: 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCM 364
+A+++F + + + P++++F+AVL+AC +SG Q + F M+E ++IKP HY+CM
Sbjct: 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468
Query: 365 VDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424
++ LGR GLL+EA +IR P P +W +LL+ACR H N+E+ + AA+++ + +
Sbjct: 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528
Query: 425 CGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAP 484
YV++ NLY +S + EA + +K + P C+ IEV + H F +G RLHP++
Sbjct: 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSR 588
Query: 485 EVYLLLNDLGLLIQEMG 501
E+Y L++L I E G
Sbjct: 589 EIYQKLDELMKEISEYG 605
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 319 bits (818), Expect = e-100
Identities = 159/492 (32%), Positives = 261/492 (53%), Gaps = 48/492 (9%)
Query: 5 KKIHAHLIKTGLAKDPIAASRILAFCTS------PAGDINYAYLVFTQIKKPNLFIWNTI 58
+++H +++KTG A D ++ C S G A VF++++ + W +
Sbjct: 308 REMHGYVVKTGFAVD-------VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360
Query: 59 IRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQG 118
I G+ ++ P A+ + M + + P +T S+ A A LG G +LH ++G
Sbjct: 361 ISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419
Query: 119 LEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLF 178
L I Y VV N++I +KC ID++ +F
Sbjct: 420 L---------ISY-----------------------VVVANALIEMYSKCKCIDKALEVF 447
Query: 179 DKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIR 238
+ ++ +SW S+I+G N + EAL FR+M +KP+ T+++ L+ACA++GA+
Sbjct: 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALM 506
Query: 239 QGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLA 298
G+ IH ++ + + A++D+Y +CG A FN +K + WN ++ G
Sbjct: 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYV 565
Query: 299 MNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSI 358
+G + A++LF+ + S + PD ++FI++L AC+ SG V Q +YF M E Y I P++
Sbjct: 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625
Query: 359 KHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418
KHY+C+VD LGRAG L EA I MP PD +WG+LL+ACR H ++E+ + AA+ I E
Sbjct: 626 KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE 685
Query: 419 LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGR 478
LD N Y+L+ NLYA + +++E R M+E + +PGCS +EV G+VH F+
Sbjct: 686 LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDE 745
Query: 479 LHPKAPEVYLLL 490
HP+ E+ +L
Sbjct: 746 SHPQIKEINTVL 757
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 183 bits (465), Expect = 6e-50
Identities = 119/422 (28%), Positives = 198/422 (46%), Gaps = 46/422 (10%)
Query: 5 KKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQ 64
+++HAH+++ G D + L GD+ A LVF ++ + + WN +I G+ +
Sbjct: 207 REVHAHVVRFGFELD-VDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFE 265
Query: 65 SSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQF 124
+ + LF M S + P +T S+ A LG R G ++HG VVK G D
Sbjct: 266 NGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324
Query: 125 IHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSR 184
+ N++I MY + G EA ++F +M ++
Sbjct: 325 VCNSLIQMYLSLGSWGEAE--------------------------------KVFSRMETK 352
Query: 185 NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIH 244
+ VSW +MISGY +N +ALE + M++ N+ P E T+ S+L+ACA LG + G +H
Sbjct: 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412
Query: 245 NFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYEN 304
+V A+I+MY KC C ++AL+VF+ +P+K + W S++ GL +N
Sbjct: 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCF 472
Query: 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCM 364
EA+ F + + LKP+ ++ IA L+AC G + K+ + ++ I +
Sbjct: 473 EALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKE-----IHAHVLRTGIGFDGFL 526
Query: 365 VDAL----GRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420
+AL R G + A S + D + W LL+ HG MA + +++E
Sbjct: 527 PNALLDLYVRCGRMNYAWNQFNS--HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584
Query: 421 KN 422
N
Sbjct: 585 VN 586
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Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 2e-44
Identities = 96/367 (26%), Positives = 182/367 (49%), Gaps = 35/367 (9%)
Query: 35 GDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSL 94
G++ +A+ VF ++ + +LF WN ++ G++++ A+ L+ ML ++P T+P +
Sbjct: 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCV 193
Query: 95 FKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFD 154
+ + G ++H VV+ G E D + N +I MY
Sbjct: 194 LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY--------------------- 232
Query: 155 VVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQE 214
KCG++ +R +FD+M R+ +SWN+MISGY N + E LELF M+E
Sbjct: 233 -----------VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281
Query: 215 QNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPER 274
++ P T+ S+++AC LG R G +H ++V F ++ V ++I MY G
Sbjct: 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341
Query: 275 ALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH 334
A +VF+ + K W +M+ G NG ++A++ ++ ++ N+ PD I+ +VL+AC
Sbjct: 342 AEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401
Query: 335 SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWG 394
G ++ L I + + +++ + +++A ++ ++P + D I W
Sbjct: 402 LGDLDVGVKLHELAERKGLISYVVVANA-LIEMYSKCKCIDKALEVFHNIP-EKDVISWT 459
Query: 395 SLLSACR 401
S+++ R
Sbjct: 460 SIIAGLR 466
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 6e-41
Identities = 106/367 (28%), Positives = 163/367 (44%), Gaps = 35/367 (9%)
Query: 38 NYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKA 97
A L TQI+K + + + I + R A+ LF + P TY +L +A
Sbjct: 74 KDARLDDTQIRKSGVSLCSQIEK-LVACGRHREALELFEILEAGCPFTLPASTYDALVEA 132
Query: 98 YAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVA 157
L R ++ V G E DQ++ N ++ M+ CG L +A
Sbjct: 133 CIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDA--------------- 177
Query: 158 WNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNI 217
RRLFD+M RN SW ++I G V ++EA LFREM E
Sbjct: 178 -----------------RRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 218 KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQ 277
T V +L A A LG+ R G+ +H ++ +T V A+IDMY KCG E A
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280
Query: 278 VFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK 337
VF+ +P+K WNSM+ G A++GY EA+ L+ ++ S + D +F ++ +
Sbjct: 281 VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340
Query: 338 VNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLL 397
+ AK + T I + +VD + G +E+A + MP + I W +L+
Sbjct: 341 LEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALI 398
Query: 398 SACRKHG 404
+ HG
Sbjct: 399 AGYGNHG 405
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (322), Expect = 2e-31
Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 4/247 (1%)
Query: 159 NSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIK 218
N+M+ + GE+ + +F KM R+ SWN ++ GY + F EAL L+ M ++
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 219 PSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQV 278
P +T +L C + + +G +H +V FEL+ VV A+I MY KCG A V
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 279 FNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKV 338
F+ +P++ WN+M+ G NG E ++LF ++ ++ PD ++ +V++AC G
Sbjct: 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304
Query: 339 NQAKDYFTLMTET-YKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLL 397
++ + +T + + S+ + ++ G EAEK+ M + DA+ W +++
Sbjct: 305 RLGREMHGYVVKTGFAVDVSV--CNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMI 361
Query: 398 SACRKHG 404
S K+G
Sbjct: 362 SGYEKNG 368
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 3e-15
Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 7/237 (2%)
Query: 176 RLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFR--EMQEQNIKPSEFTMVSLLNACAK 233
RL D + ++ VS S I V + +EALELF E P+ T +L+ AC
Sbjct: 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPAS-TYDALVEACIA 135
Query: 234 LGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSM 293
L +IR + ++ + ++ FE + ++ ++ M+ KCG A ++F+ +P++ L+ W ++
Sbjct: 136 LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTI 195
Query: 294 VFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYK 353
+ GL G EA LF + + +F+ +L A G + + +T
Sbjct: 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255
Query: 354 IKPSIKHYSC-MVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMA 409
+ SC ++D + G +E+A + MP + + W S+L+ HG E A
Sbjct: 256 VGD--TFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHGYSEEA 309
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 6e-14
Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 185 NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK 233
+ V++N++I GY + K +EAL+LF EM+++ IKP+ +T L++ K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 1e-13
Identities = 64/308 (20%), Positives = 126/308 (40%), Gaps = 54/308 (17%)
Query: 154 DVVAWNSMIIGLAKCGEIDESRRLFDKMVSR----NTVSWNSMISGYVRNVKFKEALELF 209
D + ++I AK G++D +F +MV+ N ++ ++I G R + +A +
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 210 REMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLV-------TNCFELNTIVVTAI 262
M+ +N+KP +L++AC + GA+ + F V T+ + + I V A+
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRA-----FDVLAEMKAETHPIDPDHITVGAL 585
Query: 263 IDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY 322
+ G +RA +V+ + N+K
Sbjct: 586 MKACANAGQVDRAKEVYQM-------------------------------IHEYNIKGTP 614
Query: 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIR 382
+ + +C+ G + A + M + +KP +S +VD G AG L++A ++++
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 383 SMPSD---PDAIIWGSLLSACRKHGNIEMAKQAAKQI--IELDKNESCGYVLMSNLYAAS 437
+ + SL+ AC N + A + + I I+L S L++ L +
Sbjct: 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733
Query: 438 YQFEEAME 445
Q +A+E
Sbjct: 734 -QLPKALE 740
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 6e-12
Identities = 39/143 (27%), Positives = 71/143 (49%)
Query: 190 NSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVT 249
NS + + + ++AL+L MQE + E V+L C A+ +G + + ++
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 250 NCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKL 309
+ L + A++ M+ + G A VF +P++ L WN +V G A GY +EA+ L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 310 FSGLQSSNLKPDYISFIAVLTAC 332
+ + + ++PD +F VL C
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTC 197
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-09
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 154 DVVAWNSMIIGLAKCGEIDESRRLFDKMVSR----NTVSWNSMISGYVR 198
DVV +N++I G K G+++E+ +LF++M R N +++ +I G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 62/244 (25%), Positives = 98/244 (40%), Gaps = 63/244 (25%)
Query: 178 FDKMVSRNTVSWNSMISGYVRNVK-FKEALELFREMQEQNIKPSEFTMVSLLNACAKLGA 236
F K++ T+S +M+ + + AL + R +QE +K +L++ CAK G
Sbjct: 428 FAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487
Query: 237 IRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFG 296
+ + + +V E N A+ID GC RA QV K FG
Sbjct: 488 VDAMFEVFHEMVNAGVEANVHTFGALID-----GCA-RAGQV----AK---------AFG 528
Query: 297 LAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP 356
+ ++S N+KPD + F A+++AC SG V++A D M
Sbjct: 529 A------------YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK------- 569
Query: 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQI 416
AE + P DPD I G+L+ AC G ++ AK+ + I
Sbjct: 570 --------------------AE----THPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605
Query: 417 IELD 420
E +
Sbjct: 606 HEYN 609
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-07
Identities = 17/31 (54%), Positives = 26/31 (83%)
Query: 187 VSWNSMISGYVRNVKFKEALELFREMQEQNI 217
V++NS+ISGY + K +EALELF+EM+E+ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 187 VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSE 221
V++N++I G + + +EALELF+EM+E+ I+P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 6e-06
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 180 KMVSRNTVSWNSMISGYVRNVKFKEALELFREMQ 213
K + + V++N++I G R + EA+EL EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 67/328 (20%), Positives = 126/328 (38%), Gaps = 81/328 (24%)
Query: 49 KPNLFIWNTIIRGFSQSSTPRNAILLFIDMLV-TSPIQPQRLTYPSLFKAYAQLGLARDG 107
KP+ ++N +I QS A + +M T PI P +T +L KA A G
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG----- 593
Query: 108 AQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAK 167
V + E Q IH Y G EV T +A NS ++
Sbjct: 594 ------QVDRAKEVYQMIHE-----YNIKGTP--------EVYT----IAVNSC----SQ 626
Query: 168 CGEIDESRRLFDKM----VSRNTVSWNSMI--SGYVRNVKFKEALELFREMQEQNIKPSE 221
G+ D + ++D M V + V +++++ +G+ ++ +A E+ ++ ++Q IK
Sbjct: 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL--DKAFEILQDARKQGIKLGT 684
Query: 222 FTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNT 281
+ SL+ AC+ W ++AL+++
Sbjct: 685 VSYSSLMGACSNA-----KNW------------------------------KKALELYED 709
Query: 282 VPKKGL----SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK 337
+ L S N+++ L +A+++ S ++ L P+ I++ +L A
Sbjct: 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769
Query: 338 VNQAKDYFTLMTETYKIKPSIKHYSCMV 365
+ D + E IKP++ C+
Sbjct: 770 ADVGLDLLSQAKED-GIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 6e-05
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 156 VAWNSMIIGLAKCGEIDESRRLFDKMVSRN 185
V +NS+I G K G+++E+ LF +M +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 2e-04
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 186 TVSWNSMISGYVRNVKFKEALELFREMQEQNIKP 219
++N+++ + AL + EM+ +KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 156 VAWNSMIIGLAKCGEIDESRRLFDKMVSRN 185
V +N++I GL K G ++E+ LF +M R
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 4e-04
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 154 DVVAWNSMIIGLAKCGEIDESRRLFDKMV 182
DVV +N++I GL + G +DE+ L D+M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 50 PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQ 100
P++ +NT+I G+ + A+ LF +M I+P TY L +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEM-KKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.2 bits (92), Expect = 0.002
Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 4/154 (2%)
Query: 297 LAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP 356
L G EA++L + + PD + L A G +A + + E
Sbjct: 105 LEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELN 164
Query: 357 S-IKHYSCMVDALGRAGLLEEAEKLIR---SMPSDPDAIIWGSLLSACRKHGNIEMAKQA 412
+ + L G EEA +L+ + D DA +L K G E A +
Sbjct: 165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY 224
Query: 413 AKQIIELDKNESCGYVLMSNLYAASYQFEEAMEE 446
++ +ELD + + ++ L ++EEA+E
Sbjct: 225 YEKALELDPDNAEALYNLALLLLELGRYEEALEA 258
|
Length = 291 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 502 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.77 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.74 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.73 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.7 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.7 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.7 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.69 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.67 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.63 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.62 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.5 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.48 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.48 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.48 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.48 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.45 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.44 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.42 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.41 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.4 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.38 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.38 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.38 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.37 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.37 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.36 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.36 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.36 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.34 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.33 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.33 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.31 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.28 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.26 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.24 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.2 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.18 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.18 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.14 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.14 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.08 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.06 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.05 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.05 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.03 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.03 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.03 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.02 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.02 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.99 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.99 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.98 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.98 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.96 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.95 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.92 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.87 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.86 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.8 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.8 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.79 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.77 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.76 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.75 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.73 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.72 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.71 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.7 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.69 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.68 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.68 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.67 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.67 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.65 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.64 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.62 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.58 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.58 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.57 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.56 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.55 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.55 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.52 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.51 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.49 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.46 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.44 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.44 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.44 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.41 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.4 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.4 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.38 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.35 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.35 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.34 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.32 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.32 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.28 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.28 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.27 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.25 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.23 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.21 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.18 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.14 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.12 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.1 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.08 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.05 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.03 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.01 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.99 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.98 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.98 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.96 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.96 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.96 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.95 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.94 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.89 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.86 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.82 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.81 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.8 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.79 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.79 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.79 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.78 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.78 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.78 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.78 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.75 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.73 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.72 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.69 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.69 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.67 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.63 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.62 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.61 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.59 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.58 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.55 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.54 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.53 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.5 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.48 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.48 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.47 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.46 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.46 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.45 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.45 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.44 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.43 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.43 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.42 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.41 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.39 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.34 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.19 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.16 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.16 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.14 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 97.09 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.08 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.06 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.05 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.02 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.96 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.94 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.86 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.83 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.8 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.78 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.72 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.65 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.64 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.63 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.62 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.58 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.57 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.57 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.48 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.45 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.41 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.39 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.37 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.36 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.34 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.26 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.23 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.21 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.19 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.17 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.16 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.11 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.08 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.07 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.98 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.92 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.82 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.8 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.77 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.75 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.74 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.62 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.56 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.54 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.52 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.5 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.49 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.42 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.38 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.28 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.26 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.2 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.13 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.97 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.83 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.76 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.72 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.68 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.63 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.55 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.35 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.2 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.18 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 94.15 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.12 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.02 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.0 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.96 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.92 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.87 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.77 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.74 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.74 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.67 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.56 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.52 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 93.32 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.28 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.25 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 93.03 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.02 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 93.01 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.95 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.91 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.85 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.51 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.49 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.41 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.4 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.39 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 92.33 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.33 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.21 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.13 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 92.07 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 92.0 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 91.97 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.81 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.73 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.66 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 91.55 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.55 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.39 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.16 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.16 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 90.86 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.79 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 90.58 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.49 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.25 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.25 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.17 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.14 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.94 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.83 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 89.72 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.07 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 89.02 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.95 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.89 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.78 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 88.71 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.7 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.62 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.41 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.53 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 87.43 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.24 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.87 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 86.16 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.14 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 84.89 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 84.83 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.81 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 84.76 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 84.68 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 84.67 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 84.52 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 84.3 | |
| KOG2582 | 422 | consensus COP9 signalosome, subunit CSN3 [Posttran | 84.15 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 84.11 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.91 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.99 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 82.48 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.35 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 82.11 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 82.09 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 82.03 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.02 | |
| cd08819 | 88 | CARD_MDA5_2 Caspase activation and recruitment dom | 81.92 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.6 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 81.42 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.0 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 80.36 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 80.24 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-74 Score=591.19 Aligned_cols=495 Identities=34% Similarity=0.639 Sum_probs=459.4
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhc
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVT 81 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 81 (502)
+.+++++..|.+.|+.||+.++|.++..| ++.|++++|.++|+.|++||..+||++|.+|++.|++++|+++|++|.+.
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y-~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMY-VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHH-hcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 34667777888888888888889999999 99999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHH
Q 046039 82 SPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSM 161 (502)
Q Consensus 82 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l 161 (502)
|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+++
T Consensus 283 -g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~l 360 (857)
T PLN03077 283 -SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAM 360 (857)
T ss_pred -CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 6777777777
Q ss_pred HHHHHhcCCHHHHHHHH---------------------------------------------------------------
Q 046039 162 IIGLAKCGEIDESRRLF--------------------------------------------------------------- 178 (502)
Q Consensus 162 ~~~~~~~~~~~~a~~~~--------------------------------------------------------------- 178 (502)
+.+|++.|++++|+++|
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 77777655555555444
Q ss_pred -------HccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC
Q 046039 179 -------DKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC 251 (502)
Q Consensus 179 -------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 251 (502)
++|.++|..+|+.++.+|++.|+.++|+.+|++|.. +++||..||..++.+|++.|+++.+.+++..+.+.|
T Consensus 441 ~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 444455666677777777777777777777777765 589999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046039 252 FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTA 331 (502)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 331 (502)
+.++..++++|+.+|++.|++++|..+|+.+ .+|..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 9999999999999999999999999999999 889999999999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046039 332 CNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQ 411 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 411 (502)
|.+.|.+++|.++|+.|.+.+++.|+..+|+.++.+|++.|++++|.+++++|..+|+..+|++|+.+|...|+.+.+..
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 99999999999999999976799999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHH
Q 046039 412 AAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLN 491 (502)
Q Consensus 412 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 491 (502)
..+++++++|+++..|..|+++|...|+|++|.++.+.|++.|++++||+||+++++++|.|+.++++||+..+||..|.
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~ 758 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLE 758 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 046039 492 DLGLLIQEMG 501 (502)
Q Consensus 492 ~~~~~~~~~~ 501 (502)
.+..+|++.|
T Consensus 759 ~l~~~~~~~g 768 (857)
T PLN03077 759 GFYEKMKASG 768 (857)
T ss_pred HHHHHHHhCC
Confidence 9999999876
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-73 Score=572.40 Aligned_cols=494 Identities=28% Similarity=0.493 Sum_probs=479.9
Q ss_pred chHHHHHHHHHHhC-CCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC----CCcchHHHHHHHHhcCCChHHHHHHHH
Q 046039 2 KDLKKIHAHLIKTG-LAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK----PNLFIWNTIIRGFSQSSTPRNAILLFI 76 (502)
Q Consensus 2 ~~~~~i~~~~~~~g-~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~ 76 (502)
+.|.+++..|.+.+ ..||..+|+.++..| ++.++++.|.+++..+.+ ||..+||.++..|++.|+++.|.++|+
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~-~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~ 182 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEAC-IALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHh
Confidence 46888999998865 789999999999999 999999999999999874 999999999999999999999999999
Q ss_pred HhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC---CC
Q 046039 77 DMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT---EF 153 (502)
Q Consensus 77 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~ 153 (502)
+|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|+.+.+.+++..+.. .+
T Consensus 183 ~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~ 257 (697)
T PLN03081 183 EMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257 (697)
T ss_pred cCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc
Confidence 996 3799999999999999999999999999999999999999999999999999999999999877654 68
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046039 154 DVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK 233 (502)
Q Consensus 154 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 233 (502)
|..+|++|+.+|++.|++++|.++|+.|.++|+.+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 046039 234 LGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGL 313 (502)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (502)
.|+++.|.+++..+.+.|++|+..+++.|+.+|++.|++++|.++|++|.++|+.+|+.||.+|++.|+.++|+++|++|
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 046039 314 QSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIW 393 (502)
Q Consensus 314 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 393 (502)
.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+.+++.|+..+|+.++.+|++.|++++|.++++++...|+..+|
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~ 497 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW 497 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHH
Confidence 99999999999999999999999999999999999987799999999999999999999999999999999988999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEE
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEF 473 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (502)
++|+.+|...|+.+.|..++++++++.|++...|..|+.+|.+.|++++|.++++.|.+.|+.+.||++|+++++.+|.|
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f 577 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSF 577 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCchHHHHHHHHHHHHHHhcC
Q 046039 474 VAGGRLHPKAPEVYLLLNDLGLLIQEMG 501 (502)
Q Consensus 474 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 501 (502)
+.+++.||+..+||..|..+..+|.+.|
T Consensus 578 ~~~d~~h~~~~~i~~~l~~l~~~~~~~g 605 (697)
T PLN03081 578 FSGDRLHPQSREIYQKLDELMKEISEYG 605 (697)
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999876
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-62 Score=499.46 Aligned_cols=449 Identities=27% Similarity=0.495 Sum_probs=395.6
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhc
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVT 81 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 81 (502)
+.+.+++..+.+.|..|+...+|.++..| ++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|...
T Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~n~li~~~-~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~ 181 (857)
T PLN03077 103 EEGSRVCSRALSSHPSLGVRLGNAMLSMF-VRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA 181 (857)
T ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHH-HhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 34667788888888888888889999999 99999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeH---
Q 046039 82 SPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAW--- 158 (502)
Q Consensus 82 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--- 158 (502)
|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..+++.++.+|++.|+++.|.++|++|. .+|..+|
T Consensus 182 -g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~~d~~s~n~l 259 (857)
T PLN03077 182 -GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-RRDCISWNAM 259 (857)
T ss_pred -CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-CCCcchhHHH
Confidence 99999999999999888888888888888888888888888888888888888888888888887776 3444444
Q ss_pred -------------------------------------------------------------------HHHHHHHHhcCCH
Q 046039 159 -------------------------------------------------------------------NSMIIGLAKCGEI 171 (502)
Q Consensus 159 -------------------------------------------------------------------~~l~~~~~~~~~~ 171 (502)
++++.+|++.|++
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 339 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCH
Confidence 4444555557777
Q ss_pred HHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC
Q 046039 172 DESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC 251 (502)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 251 (502)
++|.++|++|..||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|
T Consensus 340 ~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 340 GEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred HHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 77788888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046039 252 FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTA 331 (502)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 331 (502)
+.++..+++.|+.+|++.|++++|.++|++|.++++.+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+
T Consensus 420 ~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a 498 (857)
T PLN03077 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSA 498 (857)
T ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 589999999999999
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 046039 332 CNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQ 411 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 411 (502)
|++.|+.+.+.+++..+.+. |+.++..+++.|+.+|++.|++++|.++|+.+ .||..+|++++.+|.+.|+.++|.+
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~ 575 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVE 575 (857)
T ss_pred HhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999887 88888888888888888888888888888887 6788888888888888888888888
Q ss_pred HHHHHHhc--CCCCcchHHHHHHHHHhcCCchHHHHHHHHhh-hcCCccC
Q 046039 412 AAKQIIEL--DKNESCGYVLMSNLYAASYQFEEAMEERLLMK-EVKIEKE 458 (502)
Q Consensus 412 ~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 458 (502)
+|++|.+. .|+. .+|..++.+|.+.|++++|.++|+.|. +.|+.|+
T Consensus 576 lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 576 LFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 88888763 3544 445666667888888888888888887 5666664
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-60 Score=480.06 Aligned_cols=437 Identities=14% Similarity=0.243 Sum_probs=262.6
Q ss_pred CChHHHHHHHHhhhCCCCChhHHHHHhccCCC----CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHH
Q 046039 18 KDPIAASRILAFCTSPAGDINYAYLVFTQIKK----PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPS 93 (502)
Q Consensus 18 p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 93 (502)
|+..+|+.+|..| ++.|+++.|.++|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+.
T Consensus 435 pd~~Tyn~LL~a~-~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMSVC-ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGA 512 (1060)
T ss_pred CCHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHH
Confidence 4555556666665 566666666666665543 55566666666666666666666666666555 56666666666
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-----CCCeeeHHHHHHHHHhc
Q 046039 94 LFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-----EFDVVAWNSMIIGLAKC 168 (502)
Q Consensus 94 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 168 (502)
+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .||..+|++++.+|++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 6666666666666666666666666666666666666666666666666666665532 35555666666666666
Q ss_pred CCHHHHHHHHHccC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHH
Q 046039 169 GEIDESRRLFDKMV----SRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIH 244 (502)
Q Consensus 169 ~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 244 (502)
|++++|.++|+.|. .|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 66666666666653 24455666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 046039 245 NFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVP----KKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP 320 (502)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 320 (502)
+.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|. .++..+|+.||.+|++.|++++|.++|++|...|+.|
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 666666666666666666666666666666666666553 3455566666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----c-------------------CCHHHH
Q 046039 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR----A-------------------GLLEEA 377 (502)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A 377 (502)
|..||+.++.+|++.|+++.|.+++..|.+. |+.||..+|+.++..|.+ . +..++|
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 6666666666666666666666666666555 666666666665544221 1 112445
Q ss_pred HHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHhcCC-chHHHHHHHHhhh
Q 046039 378 EKLIRSMPSD---PDAIIWGSLLSACRKHGNIEMAKQAAKQIIE-LDKNESCGYVLMSNLYAASYQ-FEEAMEERLLMKE 452 (502)
Q Consensus 378 ~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 452 (502)
..+|++|... ||..+|+.++.+++..+....+..+++.+.. -.+.+...|..|+..+ |+ .++|..++++|..
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~ 908 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHH
Confidence 5566655542 5666666666555555555555555555432 2234455666666655 33 3578888999988
Q ss_pred cCCccCCc
Q 046039 453 VKIEKEPG 460 (502)
Q Consensus 453 ~~~~~~~~ 460 (502)
.|+.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 88877654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-60 Score=481.44 Aligned_cols=453 Identities=15% Similarity=0.214 Sum_probs=420.9
Q ss_pred chHHHHHHHHHHhCC-CCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHh
Q 046039 2 KDLKKIHAHLIKTGL-AKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLV 80 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~-~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 80 (502)
+.|.+++++|.+.|+ +|+...++.++..| .+.|.+++|.++|+.|..||..+|+.++.+|++.|+++.|.++|+.|.+
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~-~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~ 465 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKAC-KKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQE 465 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHH-HHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 578999999999996 56777888889888 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC---CCCeee
Q 046039 81 TSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT---EFDVVA 157 (502)
Q Consensus 81 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~ 157 (502)
. |+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .||..+
T Consensus 466 ~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT 544 (1060)
T PLN03218 466 A-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544 (1060)
T ss_pred c-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 8 999999999999999999999999999999999999999999999999999999999999999999965 699999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccC------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046039 158 WNSMIIGLAKCGEIDESRRLFDKMV------SRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNAC 231 (502)
Q Consensus 158 ~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 231 (502)
|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|+.|.+.|++|+..+|+.++.+|
T Consensus 545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 9999999999999999999999993 5899999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC----CcchHHHHHHHHHhcCChHHHH
Q 046039 232 AKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK----GLSCWNSMVFGLAMNGYENEAI 307 (502)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~ 307 (502)
++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+. +..+|+.++.+|++.|++++|.
T Consensus 625 ~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999864 5679999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 046039 308 KLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS- 386 (502)
Q Consensus 308 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 386 (502)
++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|... |+.||..+|+.++.+|++.|++++|.+++.+|..
T Consensus 705 ~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999887 9999999999999999999999999999999976
Q ss_pred --CCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCC
Q 046039 387 --DPDAIIWGSLLSACRK----H-------------------GNIEMAKQAAKQIIELD--KNESCGYVLMSNLYAASYQ 439 (502)
Q Consensus 387 --~~~~~~~~~l~~~~~~----~-------------------~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~ 439 (502)
.||..+|+.++..|.+ . +..+.|..+|++|++.. |+ ..+|..+..++...+.
T Consensus 784 Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd-~~T~~~vL~cl~~~~~ 862 (1060)
T PLN03218 784 GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT-MEVLSQVLGCLQLPHD 862 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccccc
Confidence 3999999999876542 1 22478999999999844 55 4455666678888899
Q ss_pred chHHHHHHHHhhhcCCccC
Q 046039 440 FEEAMEERLLMKEVKIEKE 458 (502)
Q Consensus 440 ~~~A~~~~~~~~~~~~~~~ 458 (502)
.+.+..+++.|...+..+.
T Consensus 863 ~~~~~~m~~~m~~~~~~~~ 881 (1060)
T PLN03218 863 ATLRNRLIENLGISADSQK 881 (1060)
T ss_pred HHHHHHHHHHhccCCCCcc
Confidence 9999999888876665443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-56 Score=448.33 Aligned_cols=450 Identities=21% Similarity=0.326 Sum_probs=407.7
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhc
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVT 81 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 81 (502)
+.+.+++..|.+.|+.||+.+||.++..| ++.|+++.|.++|++|++||..+||.++.+|++.|++++|+++|++|.+.
T Consensus 140 ~~a~~l~~~m~~~g~~~~~~~~n~Li~~y-~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMH-VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHH-hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999 99999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHH
Q 046039 82 SPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSM 161 (502)
Q Consensus 82 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l 161 (502)
|+.|+..+|..++.+|+..|..+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|. ++|+.+|+++
T Consensus 219 -g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~~~vt~n~l 296 (697)
T PLN03081 219 -GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSM 296 (697)
T ss_pred -CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-CCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 7899999999
Q ss_pred HHHHHhcCCHHHHHHHHHcc----CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCch
Q 046039 162 IIGLAKCGEIDESRRLFDKM----VSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAI 237 (502)
Q Consensus 162 ~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 237 (502)
+.+|++.|+.++|.++|++| ..||..+|+.++.+|++.|++++|.+++..|.+.|++||..+|+.++.+|++.|++
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~ 376 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH
Confidence 99999999999999999999 56899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 046039 238 RQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK----KGLSCWNSMVFGLAMNGYENEAIKLFSGL 313 (502)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (502)
++|.++|++|. .+|..+|+.++.+|++.|+.++|.++|++|.+ +|..+|+.++.+|++.|..++|.++|+.|
T Consensus 377 ~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 377 EDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred HHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999985 47899999999999999999999999999875 56779999999999999999999999999
Q ss_pred HH-CCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CH
Q 046039 314 QS-SNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DA 390 (502)
Q Consensus 314 ~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~ 390 (502)
.+ .|+.|+..+|+.++.++++.|++++|.++++++ ++.|+..+|+.|+.+|...|+++.|..+++++.. .| +.
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 86 689999999999999999999999999999876 6789999999999999999999999999998864 35 46
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCcchHHHHH---HHHH--------hcCCchHHHHHHHHhhhcCCcc
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIELDK--NESCGYVLMS---NLYA--------ASYQFEEAMEERLLMKEVKIEK 457 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~---~~~~--------~~g~~~~A~~~~~~~~~~~~~~ 457 (502)
.+|..|++.|.+.|++++|.++++.|.+.+- .....|..+. ..+. ...-++...++..+|.+.|..|
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~ 608 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVA 608 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCC
Confidence 7999999999999999999999999997441 1111110000 0000 0111345566788888888877
Q ss_pred CCcee
Q 046039 458 EPGCS 462 (502)
Q Consensus 458 ~~~~~ 462 (502)
+....
T Consensus 609 ~~~~~ 613 (697)
T PLN03081 609 EENEL 613 (697)
T ss_pred Ccchh
Confidence 65543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=273.63 Aligned_cols=432 Identities=13% Similarity=0.053 Sum_probs=241.3
Q ss_pred CCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHH
Q 046039 32 SPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGA 108 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 108 (502)
.+.|++++|..+++.+.. ++..+|..+...+...|++++|.+.|+++.+. .+.+...+..+...+...|++++|.
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 344444444444444332 23334444455555555555555555554432 1222233444444445555555555
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC---
Q 046039 109 QLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS--- 183 (502)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 183 (502)
..++.+.+.+ +.+..++..+...+.+.|+.++|...++++.. +.+...+..+...+...|++++|..+++.+..
T Consensus 520 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 520 QRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 5555554443 22444455555555555555555555554432 23334444555555555555555555555532
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046039 184 RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAII 263 (502)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (502)
.+...|..++.++...|++++|...|+.+.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+...+..++
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 234455555555556666666666666555543 3344455555555555566666666665555543 33445555555
Q ss_pred HHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHH
Q 046039 264 DMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQ 340 (502)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 340 (502)
..+...|++++|..+++.+.+. +...+..++..+...|++++|...|+++...+ |+..++..++.++...|++++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHH
Confidence 5566666666666666555432 23345555666666666666666666666543 333555556666666666666
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 341 AKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 341 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
|.+.++.+.+ ..+.+...+..+...|...|++++|...|+++... +++..+..++..+...|+ .+|+..++++++
T Consensus 755 A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 755 AVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 6666666665 33445566666666666677777777777666532 345566666667777666 667777777777
Q ss_pred cCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHH
Q 046039 419 LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQ 498 (502)
Q Consensus 419 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 498 (502)
..|+++.++..++.++...|++++|.++++++.+.+ |.+++++..++.++-+.|
T Consensus 832 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA--------------------------PEAAAIRYHLALALLATG 885 (899)
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------------------CCChHHHHHHHHHHHHcC
Confidence 777777777777777777777777777777666443 445667777777666554
Q ss_pred h
Q 046039 499 E 499 (502)
Q Consensus 499 ~ 499 (502)
+
T Consensus 886 ~ 886 (899)
T TIGR02917 886 R 886 (899)
T ss_pred C
Confidence 4
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=273.17 Aligned_cols=438 Identities=13% Similarity=0.065 Sum_probs=383.3
Q ss_pred hHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhH
Q 046039 3 DLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDML 79 (502)
Q Consensus 3 ~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 79 (502)
.+..++..+.+. .++++.+++.+...+ ...|++++|...|+++.+ .+...+..+...+...|++++|.+.|+.+.
T Consensus 449 ~A~~~~~~~~~~-~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 449 KALAAAKKLEKK-QPDNASLHNLLGAIY-LGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHh-CCCCcHHHHHHHHHH-HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455666666653 456677788777777 899999999999999764 455678888899999999999999999998
Q ss_pred hcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeee
Q 046039 80 VTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVA 157 (502)
Q Consensus 80 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~ 157 (502)
.. .+.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+...|++++|..+++.+.. +.+...
T Consensus 527 ~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 603 (899)
T TIGR02917 527 TI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEA 603 (899)
T ss_pred Hh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 75 34566788889999999999999999999998875 45777888999999999999999999998865 456778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046039 158 WNSMIIGLAKCGEIDESRRLFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKL 234 (502)
Q Consensus 158 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 234 (502)
|..+..++...|++++|...|+.+.+ .++..+..+..++.+.|++++|...|+++.+.. +.+..++..++..+...
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 99999999999999999999998844 356678899999999999999999999999875 66788999999999999
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CcchHHHHHHHHHhcCChHHHHHHHHH
Q 046039 235 GAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK--GLSCWNSMVFGLAMNGYENEAIKLFSG 312 (502)
Q Consensus 235 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (502)
|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+.+... +..++..++.++...|++++|...+++
T Consensus 683 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred CCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999886 557788888999999999999999999987653 445778889999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CH
Q 046039 313 LQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DA 390 (502)
Q Consensus 313 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~ 390 (502)
+.+.. +.+...+..+...|...|++++|.++|+.+.+. .+.+...++.++..+...|+ .+|..+++++... | ++
T Consensus 762 ~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~ 837 (899)
T TIGR02917 762 WLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP 837 (899)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc
Confidence 99874 447788899999999999999999999999874 46678889999999999999 8899999987642 3 56
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
..+..++..+...|++++|.+.++++++.+|.++.++..++.++.+.|++++|.+++++|.
T Consensus 838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 838 AILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6788999999999999999999999999999999999999999999999999999999986
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-23 Score=218.10 Aligned_cols=414 Identities=13% Similarity=0.055 Sum_probs=329.6
Q ss_pred HhhhCCCCChhHHHHHhccCCC--C-CcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHH------------
Q 046039 28 AFCTSPAGDINYAYLVFTQIKK--P-NLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYP------------ 92 (502)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~------------ 92 (502)
...+...|++++|+..|++..+ | +...+..+...+.+.|++++|+..|++..+...-.++...+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3333678999999999999865 3 667889999999999999999999999986522111211121
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCC
Q 046039 93 SLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGE 170 (502)
Q Consensus 93 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 170 (502)
.....+.+.|++++|...++++++.. +.+...+..+..++...|++++|.+.|++... +.+...+..+...+. .++
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence 22345678899999999999999975 44677888899999999999999999998765 334556666666664 467
Q ss_pred HHHHHHHHHccCCCC------------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchH
Q 046039 171 IDESRRLFDKMVSRN------------TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIR 238 (502)
Q Consensus 171 ~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 238 (502)
.++|+..++.+.... ...+..+...+...|++++|++.|++.++.. +.+...+..+...+...|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 899999998775421 2235567788889999999999999999875 556778888999999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc-------------chHHHHHHHHHhcCChHH
Q 046039 239 QGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL-------------SCWNSMVFGLAMNGYENE 305 (502)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~l~~~~~~~g~~~~ 305 (502)
+|...++++.+.. +.++..+..+...+...++.++|...++.+..... ..+..++..+...|+.++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 9999999998764 33555555566677889999999999998865321 122345677889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 306 AIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 306 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
|..+++. .+++...+..+...+...|++++|+..|+.+.+. -+.+...+..++..|...|++++|...++.+.
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9999872 2445567778888999999999999999999874 34567888899999999999999999999887
Q ss_pred CC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 386 SD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES------CGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 386 ~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
.. | +...+..++.++...|++++|.+.++++++..|+++ .++..++.++...|++++|+..++....
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 53 4 566778889999999999999999999999776654 3666778999999999999999988753
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-23 Score=218.53 Aligned_cols=445 Identities=12% Similarity=0.060 Sum_probs=225.2
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC--C-CcchHHHHHHHHhcCCChHHHHHHHHHh
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK--P-NLFIWNTIIRGFSQSSTPRNAILLFIDM 78 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 78 (502)
+.|.+.++.+.+.+ +|+...............|+.++|++.|+++.+ | +...+..+...+...|++++|+..++++
T Consensus 129 ~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~ 207 (1157)
T PRK11447 129 EEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQM 207 (1157)
T ss_pred HHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 34555566655432 333222221222221344677777777777664 2 3445666666666777777777777666
Q ss_pred HhcCCC---------------CCCcc---cHH----------------------------------HHHHHHHhcCCchh
Q 046039 79 LVTSPI---------------QPQRL---TYP----------------------------------SLFKAYAQLGLARD 106 (502)
Q Consensus 79 ~~~~~~---------------~p~~~---~~~----------------------------------~l~~~~~~~~~~~~ 106 (502)
...... .++.. .+. .....+...|++++
T Consensus 208 ~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~ 287 (1157)
T PRK11447 208 AKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGK 287 (1157)
T ss_pred hhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHH
Confidence 432100 00000 000 00112233444444
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCCee---eHH------------HHHHHHHhcCC
Q 046039 107 GAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EFDVV---AWN------------SMIIGLAKCGE 170 (502)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~---~~~------------~l~~~~~~~~~ 170 (502)
|+..|++.++.. +.+..++..+..++.+.|++++|...|++... .|+.. .|. .....+.+.|+
T Consensus 288 A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~ 366 (1157)
T PRK11447 288 AIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANN 366 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCC
Confidence 444444444432 22344444444444445555555444444332 11110 011 11123334444
Q ss_pred HHHHHHHHHccCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHH
Q 046039 171 IDESRRLFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFL 247 (502)
Q Consensus 171 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 247 (502)
+++|+..|+++.. .+...+..+..++...|++++|++.|+++.+.. +.+...+..+...+. .++.++|..+++.+
T Consensus 367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l 444 (1157)
T PRK11447 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASL 444 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhC
Confidence 5555544444422 122334444444444455555555554444432 222333333333332 23344444444333
Q ss_pred HHcCCC--------CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046039 248 VTNCFE--------LNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSS 316 (502)
Q Consensus 248 ~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (502)
...... .....+..+...+...|++++|+..|++..+.+ +..+..+...|.+.|++++|...++++.+.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 211000 001122334444555566666666666554432 234455555666666666666666665553
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh---------hHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 046039 317 NLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSI---------KHYSCMVDALGRAGLLEEAEKLIRSMPSD 387 (502)
Q Consensus 317 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (502)
.. .+...+..+...+...++.++|...++.+... ...++. ..+..+...+...|+.++|..+++.-+
T Consensus 525 ~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p-- 600 (1157)
T PRK11447 525 KP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP-- 600 (1157)
T ss_pred CC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence 21 12333333333344556666666666554321 111111 111234455667777777777777332
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 388 PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+++..+..+...+.+.|++++|+..|+++++.+|+++..+..++.+|...|++++|++.++.+.+..
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 3455667788889999999999999999999999999999999999999999999999999877543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-24 Score=192.53 Aligned_cols=358 Identities=13% Similarity=0.099 Sum_probs=181.9
Q ss_pred cccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCCeeeH-HHHHHHH
Q 046039 88 RLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EFDVVAW-NSMIIGL 165 (502)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~-~~l~~~~ 165 (502)
..+|..+...+-..|+++.|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.+... .|+.... +.+...+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 3455555555555555555555555555542 12344555555555555555555555544432 2322221 2223333
Q ss_pred HhcCCHHHHHHHHHccCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHH
Q 046039 166 AKCGEIDESRRLFDKMVSRN---TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEW 242 (502)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 242 (502)
...|++++|...+.+.++.+ ...|+.|...+-.+|+...|+..|++..+.. +.-...|..|...|...+.++.|..
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHH
Confidence 44555555555554443321 2345555555555555555555555555442 2223445555555555555555555
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046039 243 IHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLK 319 (502)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 319 (502)
.|.+..... +....++..+...|...|..+.|+..+++..+.+ +.+|+.|..++-..|++.+|...|.+..... .
T Consensus 274 ~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p 351 (966)
T KOG4626|consen 274 CYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-P 351 (966)
T ss_pred HHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-C
Confidence 555554432 2234444455555555555555555555554432 2255555555555555555555555555432 1
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHH
Q 046039 320 PDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD-AIIWGSLL 397 (502)
Q Consensus 320 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~ 397 (502)
.-..+.+.|...+...|.++.|..+|..... -.+.-...++.|...|.++|++++|+.-|++... +|. ...++.++
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmG 429 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMG 429 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcc
Confidence 1234455555555555555555555555543 1112234445555555555555555555555443 243 23555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 398 SACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 398 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
..|-..|+.+.|++.+.+++..+|.-...+..|+.+|...|+..+|+.-++...
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=190.27 Aligned_cols=379 Identities=14% Similarity=0.122 Sum_probs=325.6
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCC-CcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchh-HHHHHH
Q 046039 53 FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQP-QRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQF-IHNTII 130 (502)
Q Consensus 53 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 130 (502)
.+|+.+...+-..|+++.|+.+|+.+.+. +| ....|..+..++...|+.+.|.+.|.+.++. .|+.. ....+.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 46888899999999999999999999974 45 4668999999999999999999999999885 34443 345566
Q ss_pred HHHHhCCChhHHHHHHhhcCC-CC-CeeeHHHHHHHHHhcCCHHHHHHHHHccCCCC---hhhHHHHHHHHHhCCChHHH
Q 046039 131 YMYANCGFLSEARLMFDEVDT-EF-DVVAWNSMIIGLAKCGEIDESRRLFDKMVSRN---TVSWNSMISGYVRNVKFKEA 205 (502)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 205 (502)
..+-..|++++|...|.+... .| -...|+.|...+-..|++..|+..|++.++-| ...|-.|...|...+.+++|
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 667778999999998877554 44 45689999999999999999999999996644 45789999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 046039 206 LELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK 285 (502)
Q Consensus 206 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 285 (502)
...|....... +.....+..+...|...|.++.|+..|++.++.. +.=+..|+.|..++-..|++.+|.+++.+...-
T Consensus 272 vs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 272 VSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99999988763 4556778888888999999999999999999874 233788999999999999999999999988764
Q ss_pred ---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhH
Q 046039 286 ---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPD-YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-IKH 360 (502)
Q Consensus 286 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 360 (502)
...+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-..|++++|+..+++.. .+.|+ ...
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda 424 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADA 424 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHH
Confidence 3558899999999999999999999998884 444 4678889999999999999999999988 56776 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPS-DPD-AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASY 438 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 438 (502)
|+.+...|...|+.+.|.+.+.+... .|. ...++.|...|...|+..+|++.|+.+++++|+.+..+..++.++.--.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 99999999999999999999988764 454 4588999999999999999999999999999999999999998887777
Q ss_pred CchHH
Q 046039 439 QFEEA 443 (502)
Q Consensus 439 ~~~~A 443 (502)
+|.+-
T Consensus 505 dw~D~ 509 (966)
T KOG4626|consen 505 DWTDY 509 (966)
T ss_pred cccch
Confidence 76653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-22 Score=195.72 Aligned_cols=391 Identities=12% Similarity=0.023 Sum_probs=280.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 046039 55 WNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYA 134 (502)
Q Consensus 55 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 134 (502)
+......+.+.|++++|+..|++..+ +.|+...|..+..++...|+++.|+..++..++.. +.+...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 34556667777888888888887774 45666677777777788888888888888877764 335667777778888
Q ss_pred hCCChhHHHHHHhhcCCC--CCeeeHHHHHHHHHhcCCHHHHHHHHHcc-----------------------------CC
Q 046039 135 NCGFLSEARLMFDEVDTE--FDVVAWNSMIIGLAKCGEIDESRRLFDKM-----------------------------VS 183 (502)
Q Consensus 135 ~~g~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------------------------~~ 183 (502)
..|++++|...|...... .+......++..+........+...++.- .+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 888888887666543211 11111111111111100111111111111 01
Q ss_pred CCh---hhHHHHHHHH---HhCCChHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc
Q 046039 184 RNT---VSWNSMISGY---VRNVKFKEALELFREMQEQN-I-KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELN 255 (502)
Q Consensus 184 ~~~---~~~~~l~~~~---~~~~~~~~a~~~~~~m~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 255 (502)
.+. ..+..+...+ ...+++++|.+.|+...+.+ . +.....+..+...+...|++++|...++..++.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 011 1111111111 23467999999999998765 2 3345667788888889999999999999999874 334
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046039 256 TIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTAC 332 (502)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 332 (502)
...+..+...+...|++++|...|+++.+. +...|..+...+...|++++|+..|++..+... .+...+..+..++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHH
Confidence 667888899999999999999999987653 456899999999999999999999999998642 3567778888899
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-------HH-HHHHHHHHHHhc
Q 046039 333 NHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD-------AI-IWGSLLSACRKH 403 (502)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-------~~-~~~~l~~~~~~~ 403 (502)
.+.|++++|+..|+.... ..+.+...++.+..++...|++++|...|++... .|+ .. .++..+..+...
T Consensus 444 ~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999986 3455678889999999999999999999988654 232 11 122222334457
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 404 GNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 404 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
|++++|.+.++++++++|++...+..++.++.+.|++++|++.+++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-20 Score=188.61 Aligned_cols=437 Identities=11% Similarity=0.014 Sum_probs=240.3
Q ss_pred hHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC--CCcchHHHHHHHHhcCCChHHHHHHHHHhHh
Q 046039 3 DLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK--PNLFIWNTIIRGFSQSSTPRNAILLFIDMLV 80 (502)
Q Consensus 3 ~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 80 (502)
.|...+....+. .|+.......+..++.+.|++++|+..+++..+ |+-..|..++..+ +++.+|..+++++..
T Consensus 62 ~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~ 136 (987)
T PRK09782 62 TAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLA 136 (987)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHH
Confidence 456667777664 566555555555544899999999999999876 5444444444333 888888899999887
Q ss_pred cCCCCCCcccHHHHHHHH-----HhcCCchhHHHHHHHHHHhCCCCchhHHHHH-HHHHHhCCChhHHHHHHhhcCC-CC
Q 046039 81 TSPIQPQRLTYPSLFKAY-----AQLGLARDGAQLHGRVVKQGLEFDQFIHNTI-IYMYANCGFLSEARLMFDEVDT-EF 153 (502)
Q Consensus 81 ~~~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~-~~ 153 (502)
. .+-+..++..+.... ....+.++|.+.++ .....+.|+..+.... ..+|...|++++|+.++.++.+ .|
T Consensus 137 ~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p 213 (987)
T PRK09782 137 Q--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT 213 (987)
T ss_pred h--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Confidence 5 222333444444430 11233355555555 3333333344444444 7788888888888888877765 22
Q ss_pred -CeeeHHHHHHHHHh-cCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHH---
Q 046039 154 -DVVAWNSMIIGLAK-CGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIK-PSEFTMVSL--- 227 (502)
Q Consensus 154 -~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l--- 227 (502)
+......+..+|.. .++ +.+..+++...+.++..+..++..|.+.|+.++|.++++++...... |...++..+
T Consensus 214 l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r 292 (987)
T PRK09782 214 LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSK 292 (987)
T ss_pred CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHh
Confidence 33334555556666 355 66666666544556677777777777777777777777665432111 111111100
Q ss_pred ---------------------------HHHHh------------------------------------------------
Q 046039 228 ---------------------------LNACA------------------------------------------------ 232 (502)
Q Consensus 228 ---------------------------l~~~~------------------------------------------------ 232 (502)
+..+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~ 372 (987)
T PRK09782 293 YSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE 372 (987)
T ss_pred ccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC
Confidence 11111
Q ss_pred ---------------ccCchHHHHHHHHHHHHc-C-CCCchhHHHHHHHHHHhc--------------------------
Q 046039 233 ---------------KLGAIRQGEWIHNFLVTN-C-FELNTIVVTAIIDMYCKC-------------------------- 269 (502)
Q Consensus 233 ---------------~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~-------------------------- 269 (502)
..|+.++|..+++..... + ...+......++..|.+.
T Consensus 373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 452 (987)
T PRK09782 373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQS 452 (987)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHh
Confidence 122333333333333221 0 011122222333333333
Q ss_pred -------------------------------------CChHHHHHHHhcCCCCCcchHHHHHHH--HHhcCChHHHHHHH
Q 046039 270 -------------------------------------GCPERALQVFNTVPKKGLSCWNSMVFG--LAMNGYENEAIKLF 310 (502)
Q Consensus 270 -------------------------------------g~~~~A~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~ 310 (502)
++.++|...+.+.....+..+..+..+ +...|++++|...|
T Consensus 453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 233333333333222222223322222 24566666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC
Q 046039 311 SGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD 389 (502)
Q Consensus 311 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 389 (502)
+++... .|+...+..+..++...|+.++|...++...+. . +.+...+..+.....+.|++++|...+++... .|+
T Consensus 533 rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~ 608 (987)
T PRK09782 533 QKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS 608 (987)
T ss_pred HHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 665443 233333444555566666666666666666543 1 22222222333333445777777777766654 366
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 390 AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
...|..++.++.+.|++++|+..++++++++|+++..+..++.++...|++++|+..+++..+
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666777777777777777777777777777777777777777777777777777777776654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=185.92 Aligned_cols=284 Identities=11% Similarity=0.060 Sum_probs=187.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPS---EFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIID 264 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (502)
++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|..+|+.+.+.. +.+..++..++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 344444444555555555555554444321111 1233444444555555555555555554432 233444445555
Q ss_pred HHHhcCChHHHHHHHhcCCCCCc--------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 046039 265 MYCKCGCPERALQVFNTVPKKGL--------SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSG 336 (502)
Q Consensus 265 ~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 336 (502)
.+.+.|++++|.+.++.+.+.++ ..+..++..+...|++++|...|+++.+.. +.+...+..+...+...|
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQG 228 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCC
Confidence 55555555555555554433211 134456667778888888888888887753 224567777888899999
Q ss_pred CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046039 337 KVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQ 415 (502)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 415 (502)
++++|.++++++... ........+..++.+|...|++++|...++++.. .|+...+..++..+.+.|++++|...+++
T Consensus 229 ~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 229 DYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred CHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999998864 2112245678888999999999999999998765 47777778899999999999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHh--cCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEE
Q 046039 416 IIELDKNESCGYVLMSNLYAA--SYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFV 474 (502)
Q Consensus 416 ~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (502)
+++..|+++.....+...+.. .|+.++|..++++|.++++.++|.+.....+.....+.
T Consensus 308 ~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~~cg~~~~~~~ 368 (389)
T PRK11788 308 QLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCRNCGFTARTLY 368 (389)
T ss_pred HHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECCCCCCCCccce
Confidence 999999988655445433323 56999999999999999999999876655554444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-20 Score=183.19 Aligned_cols=356 Identities=12% Similarity=0.007 Sum_probs=204.6
Q ss_pred CCCCChhHHHHHhccCCC------CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCch
Q 046039 32 SPAGDINYAYLVFTQIKK------PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLAR 105 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 105 (502)
.+..+++.---.|...++ .+..-...++..+.++|++.+|..+++..... .+-+...+..++.+....|+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHH
Confidence 344555555555555443 22333344455556666666666666666553 2222334444445555566666
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCC
Q 046039 106 DGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRN 185 (502)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 185 (502)
.|...++.+.... +.+...+..+...+...|++++|...+++... ....+
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~-----------------------------l~P~~ 143 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWL-----------------------------AFSGN 143 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------------hCCCc
Confidence 6666666666653 23445555566666666666666666655442 01123
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDM 265 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (502)
...+..++..+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+....++......+...
T Consensus 144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 144 SQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 3445555555555566666655555554432 2222222222 2244555666666655555544322233333334455
Q ss_pred HHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCH
Q 046039 266 YCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENE----AIKLFSGLQSSNLKPDYISFIAVLTACNHSGKV 338 (502)
Q Consensus 266 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 338 (502)
+.+.|++++|+..++++.+. +...+..+...+...|++++ |...|++..+..+ .+...+..+...+...|++
T Consensus 222 l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCH
Confidence 55566666666666554432 23355556666666666664 6777777776532 2456777777778888888
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 046039 339 NQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAI-IWGSLLSACRKHGNIEMAKQAAKQI 416 (502)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~ 416 (502)
++|...+++.... .+.+...+..+..+|.+.|++++|...|+++.. .|+.. .+..++.++...|++++|...|+++
T Consensus 301 ~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 301 EKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888887753 233455666677788888888888888877764 35443 3344566778888888888888888
Q ss_pred HhcCCCCc
Q 046039 417 IELDKNES 424 (502)
Q Consensus 417 ~~~~p~~~ 424 (502)
++..|++.
T Consensus 379 l~~~P~~~ 386 (656)
T PRK15174 379 IQARASHL 386 (656)
T ss_pred HHhChhhc
Confidence 88877754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-19 Score=178.70 Aligned_cols=433 Identities=10% Similarity=-0.026 Sum_probs=300.4
Q ss_pred hHHHHHHHHHHhCCCCChHHHHHHHHhh--------hCCCCChhHHHHHhccCCCC--CcchHHHH-HHHHhcCCChHHH
Q 046039 3 DLKKIHAHLIKTGLAKDPIAASRILAFC--------TSPAGDINYAYLVFTQIKKP--NLFIWNTI-IRGFSQSSTPRNA 71 (502)
Q Consensus 3 ~~~~i~~~~~~~g~~p~~~~~~~ll~~~--------~~~~~~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~~~~~~a 71 (502)
.+..+++++.+. .|+...+..++... |.+.+....++. .+...| +..+.... ...|.+.|++++|
T Consensus 126 kA~~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 126 KSVTTVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred hHHHHHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 466788888875 55544444443332 266655555655 222234 34444444 8899999999999
Q ss_pred HHHHHHhHhcCCCCCCcccHHHHHHHHHh-cCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcC
Q 046039 72 ILLFIDMLVTSPIQPQRLTYPSLFKAYAQ-LGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVD 150 (502)
Q Consensus 72 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 150 (502)
+++++++.+. + +.+......+..++.. .++ +.+..+++. .+..++.....++..|.+.|+.++|.++++++.
T Consensus 202 i~lL~~L~k~-~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 202 DTLYNEARQQ-N-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHhc-C-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 9999999986 2 2334445666667776 466 777777543 244688889999999999999999999998876
Q ss_pred C----CCCeeeHHH------------------------------HHHHHHh-----------------------------
Q 046039 151 T----EFDVVAWNS------------------------------MIIGLAK----------------------------- 167 (502)
Q Consensus 151 ~----~~~~~~~~~------------------------------l~~~~~~----------------------------- 167 (502)
. .|...+|.- ++..+.+
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA 354 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence 4 133222211 1222333
Q ss_pred ----------------------------------cCCHHHHHHHHHccCC-C-----ChhhHHHHHHHHHhCCC---hHH
Q 046039 168 ----------------------------------CGEIDESRRLFDKMVS-R-----NTVSWNSMISGYVRNVK---FKE 204 (502)
Q Consensus 168 ----------------------------------~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~---~~~ 204 (502)
.|+.++|.++|+.... + +....+-++..|.+.+. ..+
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 4445555555544422 1 11122344455554443 222
Q ss_pred HHHH----------------------H---HHHHHCCCCC--CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchh
Q 046039 205 ALEL----------------------F---REMQEQNIKP--SEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTI 257 (502)
Q Consensus 205 a~~~----------------------~---~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 257 (502)
+..+ + ...... .++ +...+..+..++.. ++.++|...+....... |+..
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 2222 1 111111 123 45566666666655 77778888777777654 4444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 046039 258 VVTAIIDMYCKCGCPERALQVFNTVPKK--GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHS 335 (502)
Q Consensus 258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 335 (502)
....+...+...|++++|...|+++... ....+..+..++.+.|++++|...+++..+.+. ++...+..+.......
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC
Confidence 4444455567899999999999977653 344677778889999999999999999998642 2333344444555667
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 046039 336 GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAA 413 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 413 (502)
|++++|...+++..+. .|+...+..+..++.+.|++++|...|++... .| +...+..++.++...|++++|+..+
T Consensus 590 Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999854 56788899999999999999999999998875 35 5678899999999999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 414 KQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 414 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+++++.+|+++.++..++.++...|++++|+..+++..+..
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-19 Score=182.62 Aligned_cols=386 Identities=10% Similarity=-0.025 Sum_probs=196.7
Q ss_pred CCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHH
Q 046039 32 SPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGA 108 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 108 (502)
...|+.++|+.++..... .+...+..+...+...|++++|.++|++..+. -+.+...+..+...+...|++++|+
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445777777777776553 23334666666777777777777777776653 1233445556666666777777777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCCh
Q 046039 109 QLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNT 186 (502)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 186 (502)
..++++++.. +.+.. +..+..++...|+.++|...++++.. +.+...+..+..++...+..+.|+..++.... ++
T Consensus 104 ~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p 180 (765)
T PRK10049 104 VKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TP 180 (765)
T ss_pred HHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CH
Confidence 7777776653 33444 66666677777777777777766554 22333444555556666666666666665544 21
Q ss_pred h--------hHHHHHHHHHh-----CCCh---HHHHHHHHHHHHC-CCCCCH-HHHH----HHHHHHhccCchHHHHHHH
Q 046039 187 V--------SWNSMISGYVR-----NVKF---KEALELFREMQEQ-NIKPSE-FTMV----SLLNACAKLGAIRQGEWIH 244 (502)
Q Consensus 187 ~--------~~~~l~~~~~~-----~~~~---~~a~~~~~~m~~~-~~~~~~-~~~~----~ll~~~~~~~~~~~a~~~~ 244 (502)
. ....++..... .+++ ++|++.++.+.+. ...|+. ..+. ..+.++...|++++|...|
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~ 260 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEY 260 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1 11111111111 1112 4445555544432 111111 0110 0012223344555555555
Q ss_pred HHHHHcCCC-CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---
Q 046039 245 NFLVTNCFE-LNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP--- 320 (502)
Q Consensus 245 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--- 320 (502)
+.+.+.+.+ |+ .....+... |...|++++|+..|+++.......
T Consensus 261 ~~ll~~~~~~P~-~a~~~la~~-------------------------------yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 261 QRLKAEGQIIPP-WAQRWVASA-------------------------------YLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred HHhhccCCCCCH-HHHHHHHHH-------------------------------HHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 554444311 11 111112334 444445555555544444322110
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 046039 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYK----------IKPS---IKHYSCMVDALGRAGLLEEAEKLIRSMPSD 387 (502)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (502)
.......+..++...|++++|.++++.+..... -.|+ ...+..+...+...|++++|+++++++...
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 012233333344455555555555555443210 0112 123344555556666666666666665432
Q ss_pred -C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 388 -P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 388 -~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
| +...+..++..+...|++++|++.++++++++|+++.++..++.++...|++++|+.+++.+.+..
T Consensus 389 ~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 389 APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 3 444556666666666666666666666666666666666666666666666666666666665443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.8e-20 Score=184.88 Aligned_cols=366 Identities=11% Similarity=0.039 Sum_probs=251.6
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046039 53 FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYM 132 (502)
Q Consensus 53 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (502)
....-.+......|+.++|++++...... -+.+...+..+...+...|++++|..++++.++.. +.+...+..+..+
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~ 92 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 33444566667788888888888888742 13334457788888888888888888888888763 3456677778888
Q ss_pred HHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhhHHHHHHHHHhCCChHHHHH
Q 046039 133 YANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS--R-NTVSWNSMISGYVRNVKFKEALE 207 (502)
Q Consensus 133 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~ 207 (502)
+...|++++|...++++.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+..++...+..++|++
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 8888888888888888754 33444 77777778888888888888888744 3 34455666777777788888887
Q ss_pred HHHHHHHCCCCCCHH------HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh---HHHHHH
Q 046039 208 LFREMQEQNIKPSEF------TMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP---ERALQV 278 (502)
Q Consensus 208 ~~~~m~~~~~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~ 278 (502)
.++.... .|+.. ....++..... ......+++ ++|++.
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~------------------------------~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFM------------------------------PTRSEKERYAIADRALAQ 218 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcc------------------------------cccChhHHHHHHHHHHHH
Confidence 7766543 22210 00001111100 000111112 334444
Q ss_pred HhcCCC---CCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 046039 279 FNTVPK---KGLS-------CWNSMVFGLAMNGYENEAIKLFSGLQSSNLK-PDYISFIAVLTACNHSGKVNQAKDYFTL 347 (502)
Q Consensus 279 ~~~~~~---~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 347 (502)
++.+.+ .++. .....+.++...|++++|+..|+++.+.+.. |+. ....+..++...|++++|+..|+.
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 443331 1111 1111133445678899999999998887532 332 222356789999999999999999
Q ss_pred hhhhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-------------C---HHHHHHHHHHHHhcCCHHH
Q 046039 348 MTETYKIKP--SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-------------D---AIIWGSLLSACRKHGNIEM 408 (502)
Q Consensus 348 ~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-------------~---~~~~~~l~~~~~~~~~~~~ 408 (502)
+.......+ .......+..++...|++++|..+++.+... | + ...+..++..+...|++++
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 876422211 1345667777889999999999999887643 3 2 2345677888999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 409 AKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 409 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
|++.++++++..|+++..+..++.++...|++++|++.++++.+..+.
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999999999999999999876644
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-19 Score=179.78 Aligned_cols=358 Identities=11% Similarity=-0.039 Sum_probs=270.3
Q ss_pred hcCCChHHHHHHHHHhHhcCCCC-CCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH
Q 046039 63 SQSSTPRNAILLFIDMLVTSPIQ-PQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSE 141 (502)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 141 (502)
.++.+|+..--.|....++..-. -+..-...++..+.+.|+++.|+.+++..+...+. +...+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 44555554444444333221111 12223445566667777788887777777776433 44445555555556677777
Q ss_pred HHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 046039 142 ARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSE 221 (502)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 221 (502)
|...|+++. .....+...+..+...+...|++++|...++++.+.. +.+.
T Consensus 95 A~~~l~~~l-----------------------------~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~ 144 (656)
T PRK15174 95 VLQVVNKLL-----------------------------AVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNS 144 (656)
T ss_pred HHHHHHHHH-----------------------------HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 766666554 1122345677888889999999999999999999864 5567
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC----cchHHHHHHHH
Q 046039 222 FTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG----LSCWNSMVFGL 297 (502)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~ 297 (502)
..+..+..++...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+.+ ...+..++..+
T Consensus 145 ~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l 222 (656)
T PRK15174 145 QIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTL 222 (656)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 78888999999999999999999988776533 33334333 34788999999999999876643 22445567788
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHH----HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC
Q 046039 298 AMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQ----AKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL 373 (502)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (502)
...|++++|+..++++...+. .+...+..+...+...|++++ |...++.+... .+.+...+..+...+.+.|+
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999998753 356778888899999999985 89999998863 34457788899999999999
Q ss_pred HHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 374 LEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 374 ~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
+++|...++++.. .| +...+..++.++.+.|++++|+..++++++.+|+++..+..++.++...|++++|+..++++.
T Consensus 300 ~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 300 NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998765 35 466788899999999999999999999999999988777778889999999999999999987
Q ss_pred hcCCc
Q 046039 452 EVKIE 456 (502)
Q Consensus 452 ~~~~~ 456 (502)
+..++
T Consensus 380 ~~~P~ 384 (656)
T PRK15174 380 QARAS 384 (656)
T ss_pred HhChh
Confidence 76544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-20 Score=176.05 Aligned_cols=292 Identities=11% Similarity=0.057 Sum_probs=204.7
Q ss_pred HHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHH
Q 046039 97 AYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRR 176 (502)
Q Consensus 97 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 176 (502)
.+...|+++.|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...|+....
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------------------ 104 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE------------------ 104 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH------------------
Confidence 3455666777777777776653 234556666666666666666666666655432211000
Q ss_pred HHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc-
Q 046039 177 LFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELN- 255 (502)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 255 (502)
.....+..++..|.+.|++++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+.
T Consensus 105 -------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 176 (389)
T PRK11788 105 -------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR 176 (389)
T ss_pred -------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch
Confidence 011345566667777777777777777776653 44566667777777777777777777777766543221
Q ss_pred ---hhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046039 256 ---TIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVL 329 (502)
Q Consensus 256 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 329 (502)
...+..++..+.+.|++++|...|+++.+. +...+..++..+.+.|++++|.++++++...+......++..++
T Consensus 177 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 256 (389)
T PRK11788 177 VEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLM 256 (389)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHH
Confidence 123445666777778888888888776543 23467778888889999999999999988754333346678888
Q ss_pred HHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHh---cCC
Q 046039 330 TACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRK---HGN 405 (502)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~---~~~ 405 (502)
.++...|++++|...++.+... .|+...+..++..+.+.|++++|..+++++.. .|+...+..++..+.. .|+
T Consensus 257 ~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~ 333 (389)
T PRK11788 257 ECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGR 333 (389)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCcc
Confidence 9999999999999999998864 46666778889999999999999999987765 4888888888877764 558
Q ss_pred HHHHHHHHHHHHh
Q 046039 406 IEMAKQAAKQIIE 418 (502)
Q Consensus 406 ~~~A~~~~~~~~~ 418 (502)
.+++...++++++
T Consensus 334 ~~~a~~~~~~~~~ 346 (389)
T PRK11788 334 AKESLLLLRDLVG 346 (389)
T ss_pred chhHHHHHHHHHH
Confidence 8999999998886
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-19 Score=175.58 Aligned_cols=387 Identities=12% Similarity=0.004 Sum_probs=287.0
Q ss_pred HhhhCCCCChhHHHHHhccCCC--CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCC-CcccHHHHHHHHHhcCCc
Q 046039 28 AFCTSPAGDINYAYLVFTQIKK--PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQP-QRLTYPSLFKAYAQLGLA 104 (502)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 104 (502)
..+ .+.|+++.|+..|++... |+...|..+..++.+.|++++|++.++...+. .| +...+..+..++...|++
T Consensus 135 ~~~-~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 135 NKA-YRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL---DPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHH-HHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCH
Confidence 344 788999999999999876 88888999999999999999999999999864 44 455888899999999999
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC------------------------------CCC
Q 046039 105 RDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT------------------------------EFD 154 (502)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------------~~~ 154 (502)
++|+..+..+...+...+... ..++..+........+...++.-.. .+.
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 999988876655432222211 1111111111111122222211110 000
Q ss_pred -eeeHHHHHHHH---HhcCCHHHHHHHHHccCCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 046039 155 -VVAWNSMIIGL---AKCGEIDESRRLFDKMVSR------NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTM 224 (502)
Q Consensus 155 -~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 224 (502)
...+..+...+ ...+++++|.+.|+..... ....|+.+..++...|++++|+..|++.++.. +.+...|
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~ 368 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSY 368 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHH
Confidence 00111111111 2246889999999988542 34568888899999999999999999998864 4456788
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcC
Q 046039 225 VSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNG 301 (502)
Q Consensus 225 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g 301 (502)
..+..++...|++++|...++.+++.. +.+..++..+...+...|++++|...|++..+.+ ...+..+...+.+.|
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC
Confidence 888999999999999999999998875 4567889999999999999999999999887643 447788889999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hh-------HHHHHHHHHHhcCC
Q 046039 302 YENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-IK-------HYSCMVDALGRAGL 373 (502)
Q Consensus 302 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~-------~~~~l~~~~~~~g~ 373 (502)
++++|+..|++..... +.+...+..+..++...|++++|+..|+..... .|+ .. .++.....+...|+
T Consensus 448 ~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 448 SIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999998753 335678888999999999999999999998753 221 11 12222233445799
Q ss_pred HHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 374 LEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 374 ~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
+++|..++++... .| +...+..++..+.+.|++++|+..|+++.++.+....
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 9999999998653 35 4457889999999999999999999999998776443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-18 Score=166.90 Aligned_cols=420 Identities=12% Similarity=0.032 Sum_probs=306.1
Q ss_pred CCCCChhHHHHHhccCCC--CCcc-hHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHH
Q 046039 32 SPAGDINYAYLVFTQIKK--PNLF-IWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGA 108 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 108 (502)
.+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++... ..+........+...+...|+++.|+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 589999999999999986 5542 233888888889999999999999872 11222222233355778889999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC--C-
Q 046039 109 QLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS--R- 184 (502)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~- 184 (502)
++++++.+..+. ++..+..++..+...++.++|++.++++.. .|+...+..++..+...++..+|+..++++.+ |
T Consensus 123 ely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 123 ALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 999999998643 577788888999999999999999999885 45555554444445456666669999999854 4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH------HHHHHHH-----hccCc---hHHHHHHHHHHHHc
Q 046039 185 NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTM------VSLLNAC-----AKLGA---IRQGEWIHNFLVTN 250 (502)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~------~~ll~~~-----~~~~~---~~~a~~~~~~~~~~ 250 (502)
+...+..+..++.+.|-...|+++..+-... +.+..... ...++-- ....+ .+.|..-++.+...
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~ 280 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR 280 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh
Confidence 5667788888999999999998777653321 11111111 1111110 01122 23444555555542
Q ss_pred C--CCCchhH----HHHHHHHHHhcCChHHHHHHHhcCCCCCc--c--hHHHHHHHHHhcCChHHHHHHHHHHHHCCC--
Q 046039 251 C--FELNTIV----VTAIIDMYCKCGCPERALQVFNTVPKKGL--S--CWNSMVFGLAMNGYENEAIKLFSGLQSSNL-- 318 (502)
Q Consensus 251 ~--~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 318 (502)
- .++.... ..-.+-++...|++.+++..|+.+...+. . +-..++++|...+++++|..+|+++.....
T Consensus 281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~ 360 (822)
T PRK14574 281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT 360 (822)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence 1 1222122 22345567788999999999999986542 3 556788999999999999999999976431
Q ss_pred ---CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCC----------CCC---hhHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 319 ---KPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKI----------KPS---IKHYSCMVDALGRAGLLEEAEKLIR 382 (502)
Q Consensus 319 ---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 382 (502)
.++......|.-++...+++++|..+++.+.+.... .|+ ...+..++..+...|++.+|++.++
T Consensus 361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 223344578889999999999999999999863110 122 2233456777889999999999999
Q ss_pred hCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 383 SMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 383 ~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
++... | |......+...+...|.+.+|.+.++.+..++|++..+....+.++...|+|++|..+.+.+.+..+
T Consensus 441 ~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 441 DLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 98754 5 7888999999999999999999999999999999999999999999999999999998877765544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-16 Score=159.56 Aligned_cols=389 Identities=11% Similarity=0.038 Sum_probs=286.7
Q ss_pred HHHhcCCChHHHHHHHHHhHhcCCCCCCcc-cHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 046039 60 RGFSQSSTPRNAILLFIDMLVTSPIQPQRL-TYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGF 138 (502)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 138 (502)
-...+.|++..|++.|++..+. .|+.. ....++..+...|+.++|+..+++.... -+........+...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKA---GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhh---CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 3456899999999999999865 45542 2237888888899999999999999722 12233344444678999999
Q ss_pred hhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHH--hCCChHHHHHHHHHHHH
Q 046039 139 LSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYV--RNVKFKEALELFREMQE 214 (502)
Q Consensus 139 ~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~ 214 (502)
+++|.++|+++.. +.++..+..++..+...++.++|++.++++...++.....++.++. ..++..+|++.++++.+
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999999876 3456677788889999999999999999997755443333444444 46666669999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCch-----hHHHHHHHHH---H--hcCC---hHHHHHHHhc
Q 046039 215 QNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNT-----IVVTAIIDMY---C--KCGC---PERALQVFNT 281 (502)
Q Consensus 215 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~---~--~~g~---~~~A~~~~~~ 281 (502)
.. |.+...+..+..++.+.|-...|.++..+-.+.--+.+. ......++.- . ...+ .+.|+.-++.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 85 667888888899999999888888776653321100010 0011111110 0 1112 2334444444
Q ss_pred CCC---CCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 282 VPK---KGLS-------CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 282 ~~~---~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
+.. .++. +..-.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|..+++.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 433 2221 223356678889999999999999999886656668889999999999999999999998764
Q ss_pred cC----CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C---------------CHH-HHHHHHHHHHhcCCHHHHH
Q 046039 352 YK----IKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P---------------DAI-IWGSLLSACRKHGNIEMAK 410 (502)
Q Consensus 352 ~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---------------~~~-~~~~l~~~~~~~~~~~~A~ 410 (502)
.+ .+++......|..+|...+++++|..+++.+... | |-. ....++..+.-.|+..+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 21 2334444578899999999999999999988652 2 222 3445677788999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 411 QAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+.+++++...|.|+.+...++.++...|+..+|+..++.....
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999887654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-17 Score=157.34 Aligned_cols=417 Identities=14% Similarity=0.075 Sum_probs=254.0
Q ss_pred CCCCChhHHHHHhccCCCC------CcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcc--cHHHHHHHHHhcCC
Q 046039 32 SPAGDINYAYLVFTQIKKP------NLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRL--TYPSLFKAYAQLGL 103 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~ 103 (502)
.-.|+++.+..+...+... -..+|..+.+++-..|++++|...|.+..+. .|+.. .+..+...+.+.|+
T Consensus 281 yfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~---~~d~~~l~~~GlgQm~i~~~d 357 (1018)
T KOG2002|consen 281 YFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA---DNDNFVLPLVGLGQMYIKRGD 357 (1018)
T ss_pred hhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---CCCCccccccchhHHHHHhch
Confidence 4556666666655554431 1224555566666666666666666555532 23332 33344555666666
Q ss_pred chhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC----ChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHH
Q 046039 104 ARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCG----FLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRL 177 (502)
Q Consensus 104 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 177 (502)
.+.+...|+.+.+.. +.+..+...+...|+..+ ..+.|..++.+... +.|...|..+...+-..+-+. ++..
T Consensus 358 le~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~ 435 (1018)
T KOG2002|consen 358 LEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDA 435 (1018)
T ss_pred HHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHH
Confidence 666666666665542 334455555555555443 34445555444432 233444444444443332222 1333
Q ss_pred HHcc--------CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHhccCchHHH
Q 046039 178 FDKM--------VSRNTVSWNSMISGYVRNVKFKEALELFREMQEQ---NIKPSE------FTMVSLLNACAKLGAIRQG 240 (502)
Q Consensus 178 ~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~ll~~~~~~~~~~~a 240 (502)
|... ....+...|.+...+...|++++|...|+..... ...++. .+--.+..+.-..++.+.|
T Consensus 436 ~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A 515 (1018)
T KOG2002|consen 436 YGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVA 515 (1018)
T ss_pred HHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHH
Confidence 3222 1234555666666666666766666666665543 112222 1222334444555666666
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046039 241 EWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSN 317 (502)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 317 (502)
.+.|..+.+.. +.-+..|-.++......+...+|...++.+.. .++..|..+...+.....+..|.+-|....+.-
T Consensus 516 ~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~ 594 (1018)
T KOG2002|consen 516 EEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT 594 (1018)
T ss_pred HHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh
Confidence 66666666543 11122233333222233566667777766554 355677777778888877777777666555432
Q ss_pred -CCCCHHHHHHHHHHHhc------------CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046039 318 -LKPDYISFIAVLTACNH------------SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSM 384 (502)
Q Consensus 318 -~~p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (502)
..+|..+...|...|.. .+..++|+++|.++.+ ..+.|...-|.+.-.++..|++.+|..+|.++
T Consensus 595 ~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqV 672 (1018)
T KOG2002|consen 595 STKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQV 672 (1018)
T ss_pred ccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHH
Confidence 23566666666665432 2456788888888886 44567777788888999999999999999988
Q ss_pred CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 385 PSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL--DKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 385 ~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
.+. ....+|..++.+|...|+|..|+++|+.+++. ..+++.+...|+.++.+.|++.+|.+.+.......+.
T Consensus 673 rEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 673 REATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 753 35568999999999999999999999999973 3567889999999999999999999988777665543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-16 Score=148.15 Aligned_cols=421 Identities=14% Similarity=0.088 Sum_probs=288.0
Q ss_pred HhhhCCCCChhHHHHHhccCCCCCcchHHHHHHH------HhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhc
Q 046039 28 AFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRG------FSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQL 101 (502)
Q Consensus 28 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~------~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 101 (502)
..|+++.|+.+.|+..|++..+-|+...++++.. +.....+..+..++...... .+-|+...+.|..-+...
T Consensus 206 g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK 283 (1018)
T KOG2002|consen 206 GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFK 283 (1018)
T ss_pred hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhc
Confidence 3444556666666666666555333332322211 11223455666666666554 234555677777778888
Q ss_pred CCchhHHHHHHHHHHhCCC--CchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCC--eeeHHHHHHHHHhcCCHHHHHH
Q 046039 102 GLARDGAQLHGRVVKQGLE--FDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EFD--VVAWNSMIIGLAKCGEIDESRR 176 (502)
Q Consensus 102 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~a~~ 176 (502)
|++..+..+...+...... .-...|-.+.++|-..|++++|...|-+... .++ +..+.-+...+...|+++.+..
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHH
Confidence 8888888888888765311 1234467788888889999999888877654 233 3445567788888999999988
Q ss_pred HHHccCC---CChhhHHHHHHHHHhCC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH-
Q 046039 177 LFDKMVS---RNTVSWNSMISGYVRNV----KFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLV- 248 (502)
Q Consensus 177 ~~~~~~~---~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~- 248 (502)
.|+.+.+ .+..+...|...|...+ ..++|..++.+..+.- +.|...|..+...+-.. +...+..+|..+.
T Consensus 364 ~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d 441 (1018)
T KOG2002|consen 364 CFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALD 441 (1018)
T ss_pred HHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHH
Confidence 8888844 34556667777776664 4577777777776653 55667777766666544 3333466665544
Q ss_pred ---HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-------Cc------chHHHHHHHHHhcCChHHHHHHHHH
Q 046039 249 ---TNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK-------GL------SCWNSMVFGLAMNGYENEAIKLFSG 312 (502)
Q Consensus 249 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 312 (502)
..+-.+.+...|.+...+...|++++|...|...... +. .+--.+...+-..++++.|.+.|..
T Consensus 442 ~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 442 ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 4555577888999999999999999999988765532 11 1233456666677889999999999
Q ss_pred HHHCCCCCCHH-HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----C
Q 046039 313 LQSSNLKPDYI-SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS----D 387 (502)
Q Consensus 313 ~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~ 387 (502)
+... .|+-. .|..++......+...+|..++..... ....++..+..+...+.+...+..|.+-|+.+.. .
T Consensus 522 Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 522 ILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred HHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 8875 34443 344443233345778888888888876 4445555666677788888888888875555443 4
Q ss_pred CCHHHHHHHHHHHH------------hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 388 PDAIIWGSLLSACR------------KHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 388 ~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
+|+.....|++.|. ..+..++|+++|.+++..+|.|..+-..++.++...|++.+|..+|.+.++...
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 67777777777665 234678899999999999999999999999999999999999999999988766
Q ss_pred c
Q 046039 456 E 456 (502)
Q Consensus 456 ~ 456 (502)
+
T Consensus 678 ~ 678 (1018)
T KOG2002|consen 678 D 678 (1018)
T ss_pred h
Confidence 3
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-17 Score=142.21 Aligned_cols=409 Identities=13% Similarity=0.075 Sum_probs=275.2
Q ss_pred HHHHHHHhhhCCCCChhHHHHHhccCCC----CCcchH-HHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcc------c
Q 046039 22 AASRILAFCTSPAGDINYAYLVFTQIKK----PNLFIW-NTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRL------T 90 (502)
Q Consensus 22 ~~~~ll~~~~~~~~~~~~A~~~~~~~~~----~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~------~ 90 (502)
+...|-..| .......+|+..++.+.+ ||.-.. -.+...+.+.+++.+|++.|+-.+.. .|+.. .
T Consensus 203 vl~nlaqqy-~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq---vpsink~~riki 278 (840)
T KOG2003|consen 203 VLFNLAQQY-EANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ---VPSINKDMRIKI 278 (840)
T ss_pred HHHHHHHHh-hhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh---ccccchhhHHHH
Confidence 333444555 666777888888888775 544332 23455677888888998888877654 33322 2
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC---C------------CCe
Q 046039 91 YPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT---E------------FDV 155 (502)
Q Consensus 91 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~------------~~~ 155 (502)
.+.+.-.+.+.|.++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|.. . |+.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 333333467888899999998888775 46666666677777778888888888887754 1 111
Q ss_pred eeHHH-----HHHHHHhcC--CHHHHHHHHHcc----CCCChh-------------hHH--------HHHHHHHhCCChH
Q 046039 156 VAWNS-----MIIGLAKCG--EIDESRRLFDKM----VSRNTV-------------SWN--------SMISGYVRNVKFK 203 (502)
Q Consensus 156 ~~~~~-----l~~~~~~~~--~~~~a~~~~~~~----~~~~~~-------------~~~--------~l~~~~~~~~~~~ 203 (502)
...+. .+.-+-+.+ +.++++-.--++ +.|+-. .+. .-...+.++|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 11111 111111111 112222111111 112100 000 0112355667777
Q ss_pred HHHHHHHHHHHCCCC------------------------------------CCHHHHHHHHHHHhccCchHHHHHHHHHH
Q 046039 204 EALELFREMQEQNIK------------------------------------PSEFTMVSLLNACAKLGAIRQGEWIHNFL 247 (502)
Q Consensus 204 ~a~~~~~~m~~~~~~------------------------------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 247 (502)
.|+++++-..+..-+ -+......-.+.....|++++|...|++.
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 777666665443211 11111111222233457889999999988
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 046039 248 VTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVP---KKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYIS 324 (502)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 324 (502)
+...-......|+ +.-.+-..|++++|+.+|-++. ..+......+...|-...+..+|++++.+.... ++.|+..
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 8765444444444 4455678899999999987754 356667777888888999999999999887765 5567888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-Hh
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP-SDPDAIIWGSLLSAC-RK 402 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~-~~ 402 (502)
+.-|...|-+.|+-.+|.+.+-.--+ -++.+..+...|...|....-+++|+.+|++.. -+|+..-|..++..| .+
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 99999999999999999988766544 567788999999999999999999999998874 369999999887766 56
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 046039 403 HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQF 440 (502)
Q Consensus 403 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 440 (502)
.|++++|.+.|+......|.+...+..|..++...|..
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 89999999999999999999999999999988877753
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-13 Score=127.09 Aligned_cols=426 Identities=11% Similarity=0.053 Sum_probs=253.4
Q ss_pred CCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHh----HhcCCCCCCcccHHHHHHHHHhcCCch
Q 046039 33 PAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDM----LVTSPIQPQRLTYPSLFKAYAQLGLAR 105 (502)
Q Consensus 33 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~~p~~~~~~~l~~~~~~~~~~~ 105 (502)
+..-++.|.+++++..+ .+...|-+-...--.+|+.+...++..+- ... |+..+...|..=...|-..|..-
T Consensus 418 rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~n-gv~i~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQAN-GVEINRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc-ceeecHHHHHHHHHHHhhcCChh
Confidence 33455777777777665 45566666655556677777776666543 233 66666666666666666666666
Q ss_pred hHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHh--------------
Q 046039 106 DGAQLHGRVVKQGLEFD--QFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAK-------------- 167 (502)
Q Consensus 106 ~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~-------------- 167 (502)
.+..+....+..|+.-. ..+|+.-...|.+.+.++-|..+|....+ +.+...|......--.
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqka 576 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKA 576 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 66666666666554321 23555555566666666666665555443 2233344444433334
Q ss_pred --------------------cCCHHHHHHHHHccCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 046039 168 --------------------CGEIDESRRLFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTM 224 (502)
Q Consensus 168 --------------------~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 224 (502)
.|+...|..++....+ .+...|-.-+..-..+.+++.|..+|.+.... .|+...|
T Consensus 577 v~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~ 654 (913)
T KOG0495|consen 577 VEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVW 654 (913)
T ss_pred HHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhh
Confidence 4555555555444422 12334444445555555555555555555442 3444444
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcC
Q 046039 225 VSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNG 301 (502)
Q Consensus 225 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g 301 (502)
.--+...--.+..++|.+++++.++.- +.-...|-.+.+.+-+.++.+.|...|..-.+. .+..|-.+...--+.|
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 444444444455555555555555542 223444555555555555555555555544332 2335555555555556
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 046039 302 YENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLI 381 (502)
Q Consensus 302 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (502)
..-.|..++++.+-.+++ +...|...++.-.+.|+.+.|..+..+..+ .++.+...|..-|....+.++-..+...+
T Consensus 734 ~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred chhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHH
Confidence 666666666665555433 455555566666666666666666665555 44555555555555555555555555555
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCce
Q 046039 382 RSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGC 461 (502)
Q Consensus 382 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 461 (502)
++.. .|+.....+...+....++++|.+.|.++++.+|++..+|..+...+.+.|.-++-.++++..... +|..|.
T Consensus 811 kkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~ 886 (913)
T KOG0495|consen 811 KKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGE 886 (913)
T ss_pred Hhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCc
Confidence 5443 455666677888888999999999999999999999999999999999999999999999888755 456777
Q ss_pred eEEEECCE
Q 046039 462 SLIEVDGE 469 (502)
Q Consensus 462 ~~~~~~~~ 469 (502)
.|+-+...
T Consensus 887 ~W~avSK~ 894 (913)
T KOG0495|consen 887 LWQAVSKD 894 (913)
T ss_pred HHHHHhhh
Confidence 77655433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-15 Score=140.84 Aligned_cols=312 Identities=15% Similarity=0.160 Sum_probs=178.3
Q ss_pred CChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHcc---CCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 046039 137 GFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKM---VSRNTVSWNSMISGYVRNVKFKEALELFRE 211 (502)
Q Consensus 137 g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 211 (502)
|++++|.+++.++.. +.....|.+|...|-+.|+.+++...+-.. ...|...|..+.....+.|++++|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 444444444444332 223334444444444444444444333222 222334444444444444555555555554
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHH----HHHHHHHHhcCChHHHHHHHhcCCCC--
Q 046039 212 MQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVV----TAIIDMYCKCGCPERALQVFNTVPKK-- 285 (502)
Q Consensus 212 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~-- 285 (502)
.++.. +++...+---...|-+.|+...|..-|.++.....+.+..-+ ...++.+...++.+.|.+.++.....
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 44443 333333333344444445555555444444444322121111 11233333444444454444443321
Q ss_pred ---CcchHHHHHHHHHhcCChHHHHHHHHHHHHC---------------------------CCCCCHHHHHHHHHHHhcC
Q 046039 286 ---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSS---------------------------NLKPDYISFIAVLTACNHS 335 (502)
Q Consensus 286 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------------~~~p~~~~~~~l~~~~~~~ 335 (502)
+...++.++..+.+...++.|......+... +..++...+ .+.-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcc
Confidence 1224455555555555555555544444431 122233331 122233344
Q ss_pred CCHHHHHHHHHHhhhhcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 046039 336 GKVNQAKDYFTLMTETYK--IKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDP---DAIIWGSLLSACRKHGNIEMAK 410 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 410 (502)
+..+....+....... . +.-+...|..+..+|...|++.+|+.+|..+...| +...|..++.+|...|.++.|+
T Consensus 391 ~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 4444444444444443 4 33357788999999999999999999999998753 5668999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 411 QAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
+.|++++...|++..+...|+.++.+.|+.++|.+.+..+.
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999998887
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-18 Score=151.18 Aligned_cols=258 Identities=16% Similarity=0.125 Sum_probs=114.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 046039 191 SMISGYVRNVKFKEALELFREMQEQNIKP-SEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKC 269 (502)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (502)
.+...+.+.|++++|+++++.......+| |...+..+...+...++++.|...++++...+. .++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 45677788899999999986654443233 444444455566678889999999999887763 366677777777 688
Q ss_pred CChHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 046039 270 GCPERALQVFNTVPK--KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSN-LKPDYISFIAVLTACNHSGKVNQAKDYFT 346 (502)
Q Consensus 270 g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 346 (502)
+++++|..++...-+ +++..+..++..+...++++++..+++.+.... ..++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988876643 345577778888899999999999999987643 34577788888899999999999999999
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 347 LMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
+..+. .|.+......++..+...|+.+++.++++..... .++..|..++.+|...|++++|+..|+++.+.+|+++
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 99874 2345778888999999999999988888766532 4556788999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
.....++.++...|+.++|..+.+++.+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999877653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-14 Score=128.51 Aligned_cols=262 Identities=13% Similarity=0.054 Sum_probs=218.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046039 185 NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIID 264 (502)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (502)
++........-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+++.- |..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 44455555667788999999999999998875 7777788888888999999888888888888774 567888999999
Q ss_pred HHHhcCChHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHH
Q 046039 265 MYCKCGCPERALQVFNTVPKKGL---SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQA 341 (502)
Q Consensus 265 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 341 (502)
.|...|+..+|+++|.+...-|. ..|-.+...|+-.|..++|+..+...-+. ++-...-+..+.--|.+.++...|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 99999999999999998877654 48999999999999999999999887764 111222233344457888999999
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046039 342 KDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--------DP-DAIIWGSLLSACRKHGNIEMAKQA 412 (502)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~A~~~ 412 (502)
.++|.+... -.|.|+...+.+.-.....+.+.+|..+|+.... ++ -..+++.|+.+|.+.+.+++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999885 3455677888888888889999999999987652 12 345788999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 413 AKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 413 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
+++++.+.|.++.++..++-+|...|+++.|.+.|.+..
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-13 Score=116.74 Aligned_cols=398 Identities=13% Similarity=0.138 Sum_probs=268.7
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhh-hCCCCChh-------------------------HHHHHhccCCCCCcchH
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFC-TSPAGDIN-------------------------YAYLVFTQIKKPNLFIW 55 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~-~~~~~~~~-------------------------~A~~~~~~~~~~~~~~~ 55 (502)
+.+.-+++.|.+.|++.++.+-..|+... |....++. -|.-+|+..+ ....+|
T Consensus 132 KDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P-KT~et~ 210 (625)
T KOG4422|consen 132 KDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP-KTDETV 210 (625)
T ss_pred chhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC-CCchhH
Confidence 34566889999999999888877776632 12222211 2223333332 466789
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046039 56 NTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYAN 135 (502)
Q Consensus 56 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (502)
..+|.++|+--..++|.++|++.... ..+.+..+||.+|.+-.-. ...+++.+|.+....||..|+|.++++..+
T Consensus 211 s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~ak 285 (625)
T KOG4422|consen 211 SIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAK 285 (625)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHH
Confidence 99999999999999999999999888 7889999999999876533 238899999999999999999999999999
Q ss_pred CCChhHHHHH----HhhcCC---CCCeeeHHHHHHHHHhcCCHHH-HHHHHHccC--------C---C-ChhhHHHHHHH
Q 046039 136 CGFLSEARLM----FDEVDT---EFDVVAWNSMIIGLAKCGEIDE-SRRLFDKMV--------S---R-NTVSWNSMISG 195 (502)
Q Consensus 136 ~g~~~~a~~~----~~~~~~---~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~--------~---~-~~~~~~~l~~~ 195 (502)
.|+++.|... +.+|.. +|+..+|..+|..+++.++..+ +..++.++. + | +...|...+..
T Consensus 286 fg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~I 365 (625)
T KOG4422|consen 286 FGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSI 365 (625)
T ss_pred hcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHH
Confidence 9998876554 444433 7899999999998888887754 444444431 1 1 34456677778
Q ss_pred HHhCCChHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046039 196 YVRNVKFKEALELFREMQEQN----IKPS---EFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCK 268 (502)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (502)
|.+..+.+-|..+-.-+.... +.|+ ..-|..+..+.+.....+.....|+.++-.-+-|+..+...++++..-
T Consensus 366 c~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v 445 (625)
T KOG4422|consen 366 CSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDV 445 (625)
T ss_pred HHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhh
Confidence 888888887777665543211 3333 223556666777778888888888888877777888888888888888
Q ss_pred cCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhcCCCHHHH-HHH
Q 046039 269 CGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY---ISFIAVLTACNHSGKVNQA-KDY 344 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a-~~~ 344 (502)
.|.++-..+++..+..-| ..-+-+-.++++..|....+.|+. .-+.....-|.. ++.++ ...
T Consensus 446 ~~~~e~ipRiw~D~~~~g------------ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~ 511 (625)
T KOG4422|consen 446 ANRLEVIPRIWKDSKEYG------------HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA--DIKEAYESQ 511 (625)
T ss_pred cCcchhHHHHHHHHHHhh------------hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHhh
Confidence 888888888877765322 111222333444555544334432 233333332221 22222 222
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046039 345 FTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-------PDAIIWGSLLSACRKHGNIEMAKQAAKQII 417 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 417 (502)
-.++.+ ........+..+-.+.+.|+.++|.++|..+..+ |......-++..-.+.+.+..|..+++-+.
T Consensus 512 ~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 512 PIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 233333 3445556677888889999999999998877432 333444456677778889999999999997
Q ss_pred hcCCC
Q 046039 418 ELDKN 422 (502)
Q Consensus 418 ~~~p~ 422 (502)
+.+-+
T Consensus 589 ~~n~~ 593 (625)
T KOG4422|consen 589 AFNLP 593 (625)
T ss_pred HcCch
Confidence 75543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-14 Score=127.68 Aligned_cols=394 Identities=13% Similarity=0.086 Sum_probs=277.8
Q ss_pred HHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHH-HHHHHHHhcCCchhHHHHHHHHHHhCCCCch----hHHHHHHHH
Q 046039 58 IIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYP-SLFKAYAQLGLARDGAQLHGRVVKQGLEFDQ----FIHNTIIYM 132 (502)
Q Consensus 58 li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~ 132 (502)
|..-|..+....+|+..|+-+.+. ..-||..... .+...+.+.+++..|+++|+..+..-+..+. .+.+.+.-.
T Consensus 207 laqqy~~ndm~~ealntyeiivkn-kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKN-KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcc-cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 344555667788999999999887 6777766443 3445677888999999999988876443333 345566667
Q ss_pred HHhCCChhHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC----------------CChhhHHHHH--
Q 046039 133 YANCGFLSEARLMFDEVDT-EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS----------------RNTVSWNSMI-- 193 (502)
Q Consensus 133 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~l~-- 193 (502)
+.+.|+++.|...|+.... .|+..+-..|+-++..-|+-++..+.|.+++. |+....+.-+
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 8899999999999998654 68888777777778888999999999988843 1111222111
Q ss_pred ---HHHHhCC--ChHHHHHHHHHHHHCCCCCCHHH-------------H--------HHHHHHHhccCchHHHHHHHHHH
Q 046039 194 ---SGYVRNV--KFKEALELFREMQEQNIKPSEFT-------------M--------VSLLNACAKLGAIRQGEWIHNFL 247 (502)
Q Consensus 194 ---~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~-------------~--------~~ll~~~~~~~~~~~a~~~~~~~ 247 (502)
.-+-+.+ +-++++-.-.++..--+.|+-.. + ..-...+.+.|+++.|.++++-+
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 1111111 12222222222222222232110 0 01123467889999999999888
Q ss_pred HHcCCCCchhHHHHHHHHH------------------------------------HhcCChHHHHHHHhcCCCCCcchHH
Q 046039 248 VTNCFELNTIVVTAIIDMY------------------------------------CKCGCPERALQVFNTVPKKGLSCWN 291 (502)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~------------------------------------~~~g~~~~A~~~~~~~~~~~~~~~~ 291 (502)
.+..-..-...-+.|-..+ ...|++++|.+.+++....+..+-.
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 7654332222222221111 1357889999999998888766544
Q ss_pred HH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 292 SM---VFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 292 ~l---~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
+| .-.+-..|+.++|++.|-++..- +..+...+..+...|....+..+|++++.+... -++.++.....|...|
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence 44 34567889999999999887653 334677888888999999999999999988765 6677788999999999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 046039 369 GRAGLLEEAEKLIRSM-PSDP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 446 (502)
-+.|+-..|.+.+-.- .--| +..+..-|..-|....-+++++..|+++--+.|+.......++.|+.+.|++++|..+
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999999875332 2223 6667777888888888899999999999989999888888889999999999999999
Q ss_pred HHHhhhcCC
Q 046039 447 RLLMKEVKI 455 (502)
Q Consensus 447 ~~~~~~~~~ 455 (502)
++...++-+
T Consensus 683 yk~~hrkfp 691 (840)
T KOG2003|consen 683 YKDIHRKFP 691 (840)
T ss_pred HHHHHHhCc
Confidence 999876644
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-13 Score=121.03 Aligned_cols=331 Identities=15% Similarity=0.066 Sum_probs=246.9
Q ss_pred CCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCC-hhhHHHHHHHH
Q 046039 118 GLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRN-TVSWNSMISGY 196 (502)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~ 196 (502)
+...|...+-.....+.+.|..+.|...|..... .-+..|.+.+...--..+.+.+..+...+...+ ...=-.+..++
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~-~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVN-RYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHh-cCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 3444555555556667778888888888877662 223444444443333344444433333333221 11112344666
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcCChHH
Q 046039 197 VRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE--LNTIVVTAIIDMYCKCGCPER 274 (502)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 274 (502)
....+.++++.-.+.....|++.+...-+....+.....|+++|+.+|+++.+..+- -|..+|+.++-.-....+..-
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 677788899999999999998777777777777778889999999999999988421 256677766643322222222
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCC
Q 046039 275 ALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKI 354 (502)
Q Consensus 275 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 354 (502)
--...-.+.+--+.|...+.+-|.-.++.++|+..|++..+.+.. ....|+.+.+-|....+...|++-++.+++ -.
T Consensus 318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~ 394 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--IN 394 (559)
T ss_pred HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cC
Confidence 122222334445667888888999999999999999999986533 456788888999999999999999999986 45
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 355 KPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 355 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
+.|-..|..|.++|.-.+...=|.-.|++... +| |...|.+|+.+|.+.++.++|+++|++++.....+...+..|+.
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 66788999999999999999999999999865 45 78899999999999999999999999999988888899999999
Q ss_pred HHHhcCCchHHHHHHHHhhh
Q 046039 433 LYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 433 ~~~~~g~~~~A~~~~~~~~~ 452 (502)
+|.+.++.++|..++++-.+
T Consensus 475 Lye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 99999999999998887765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-13 Score=118.47 Aligned_cols=399 Identities=12% Similarity=0.105 Sum_probs=284.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 046039 54 IWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMY 133 (502)
Q Consensus 54 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 133 (502)
.|-....--..++++..|.++|+..+.. -..+...|..-+.+-.+...+..|..++++.+..= +.-...|...+.+=
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHH
Confidence 3433334445567788899999998864 34566667777777788889999999999998863 33334555556666
Q ss_pred HhCCChhHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHcc--CCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 046039 134 ANCGFLSEARLMFDEVDT-EFDVVAWNSMIIGLAKCGEIDESRRLFDKM--VSRNTVSWNSMISGYVRNVKFKEALELFR 210 (502)
Q Consensus 134 ~~~g~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 210 (502)
-..|++..|.++|++-.. +|+...|.+.++.-.+-+.++.|..++++. ..|++.+|-.....-.+.|+...+..+|+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 678999999999988655 899999999999999999999999999986 56889999888888889999999999998
Q ss_pred HHHHC-C-CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCChHHHHHHH-------
Q 046039 211 EMQEQ-N-IKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELN--TIVVTAIIDMYCKCGCPERALQVF------- 279 (502)
Q Consensus 211 ~m~~~-~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~------- 279 (502)
...+. | -..+...+.+...--.....++.|..+|+..++.- +.+ ...|..+...--+-|+........
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 87664 1 01122233333333345667888888888888763 323 455665555555566655444432
Q ss_pred -hcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---hcCCCHHHHHHHH
Q 046039 280 -NTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYI-------SFIAVLTAC---NHSGKVNQAKDYF 345 (502)
Q Consensus 280 -~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-------~~~~l~~~~---~~~~~~~~a~~~~ 345 (502)
+...+.+ -.+|.-.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+.+.+.+++
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2333333 347777777777889999999999998875 444221 122222222 2356888888888
Q ss_pred HHhhhhcCCCCChhHHHHHHHHH----HhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046039 346 TLMTETYKIKPSIKHYSCMVDAL----GRAGLLEEAEKLIRSMPSD-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 420 (502)
+...+ -+|....+|.-+-.+| .++.++..|.+++..+... |...+|...|..-.+.++++....++++.++..
T Consensus 390 q~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 390 QACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 88876 4455555655444443 4678888888888776654 888888888888888888888888888888888
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCC
Q 046039 421 KNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEP 459 (502)
Q Consensus 421 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 459 (502)
|.+..+|...+..-...|+++.|..+|.-+.+.+.-..|
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 888888888888878888888888888887765543333
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-15 Score=136.98 Aligned_cols=274 Identities=13% Similarity=0.056 Sum_probs=165.1
Q ss_pred CHHHHHHHHHccCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCchHHHHH-H
Q 046039 170 EIDESRRLFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFREMQEQN--IKPSEFTMVSLLNACAKLGAIRQGEW-I 243 (502)
Q Consensus 170 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~-~ 243 (502)
+..+|+..|..++. .+..+...+..+|...+++++|.++|+.+.+.. ...+..+|...+..+-+ +-+.. +
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 44566666666432 123344556666777777777777777665542 11244556655554422 11222 2
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 046039 244 HNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL---SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP 320 (502)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 320 (502)
-+.+.+.. +..+.+|.++..+|.-.++.+.|++.|++..+.|+ .+|+.+..-+.....+|.|...|+..+....+
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 22333332 44567777777777777777777777777666544 36666666677777777777777766653211
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHH
Q 046039 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLS 398 (502)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~ 398 (502)
+-..|..+...|.+.++++.|+-.|+.+.. -.+.+......+...+.+.|+.++|+++++++.. + .++..-...+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 234555666667777777777777777663 2223445555566666777777777777776642 2 24444444555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.+...+++++|+..++++.++-|++..++..++.+|.+.|+.+.|+.-|.-+.
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 66667777777777777777777777777777777777777777766554443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-12 Score=116.04 Aligned_cols=418 Identities=10% Similarity=0.057 Sum_probs=299.1
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC--CCcc-hHHHHHHHHhcCCChHHHHHHHHHh
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK--PNLF-IWNTIIRGFSQSSTPRNAILLFIDM 78 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~~ 78 (502)
++|+.||+..+... ..+...+.....+= .+...++.|..+|++... |.+. .|...+-.--.-|+...|.++|+..
T Consensus 90 ~RARSv~ERALdvd-~r~itLWlkYae~E-mknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 90 QRARSVFERALDVD-YRNITLWLKYAEFE-MKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHhcc-cccchHHHHHHHHH-HhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 56778888877765 55666777777777 788888899999888765 4332 4444444445568888999999888
Q ss_pred HhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCC-----C
Q 046039 79 LVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTE-----F 153 (502)
Q Consensus 79 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~ 153 (502)
. ...|+...|.+.|..-.+.+.++.|..+++..+- +.|++.+|......=.+.|.+..|..+|+..... .
T Consensus 168 ~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 168 M---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred H---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 8 4588988999999888888899999999988876 4688888888888888889988888888776531 2
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHccCC--C---ChhhHHHHHHHHHhCCChHHHHHH--------HHHHHHCCCCCC
Q 046039 154 DVVAWNSMIIGLAKCGEIDESRRLFDKMVS--R---NTVSWNSMISGYVRNVKFKEALEL--------FREMQEQNIKPS 220 (502)
Q Consensus 154 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~--------~~~m~~~~~~~~ 220 (502)
+...+.+....-.++..++.|.-+|+-.+. | ....|..+...--+-|+.....+. |+.+++.+ +-|
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~n 321 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCC
Confidence 233455555555567777777777765533 1 133455554444455654443332 44455554 667
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchh-HHHHHHHH--------HHhcCChHHHHHHHhcCCCC---Ccc
Q 046039 221 EFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTI-VVTAIIDM--------YCKCGCPERALQVFNTVPKK---GLS 288 (502)
Q Consensus 221 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~---~~~ 288 (502)
-.++-..+..-...|+.+...++|+.++..-.+.... .+...|-. -....+.+.+.++|+...+. ...
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkF 401 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKF 401 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccc
Confidence 7788888888888899999999999998864332211 11111111 12467888888888765542 222
Q ss_pred ----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHH
Q 046039 289 ----CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCM 364 (502)
Q Consensus 289 ----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 364 (502)
.|.....-..++.+...|.+++...+. .-|-..+|...|..-.+.++++.+..+++.... --|.+..+|...
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKY 477 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHH
Confidence 444455556678899999999988775 578889999999988899999999999999985 224456777777
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 365 VDALGRAGLLEEAEKLIRSMPSDPD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
...=...|+.+.|..+|+-+.++|. ...|...|..-...|.+++|..+++++++..+-.. +|...+.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~ 548 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAK 548 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence 7777788999999999999988763 34677888888889999999999999998766533 5555553
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-14 Score=126.36 Aligned_cols=216 Identities=15% Similarity=0.086 Sum_probs=176.8
Q ss_pred HhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHH
Q 046039 231 CAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAI 307 (502)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 307 (502)
+.-.|+.-.+..-|+..+..... +...|-.+..+|....+.++-...|.+..+. ++.+|..-...+.-.+++++|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 34567888999999999887633 3344777788899999999999999987764 5668999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 046039 308 KLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS- 386 (502)
Q Consensus 308 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 386 (502)
.-|++.+.... -+...|..+..+..+.+.+++++..|++..+ .+|..+.+|+.....+...+++++|.+.|+....
T Consensus 415 aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 415 ADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999998642 2456677777777788999999999999988 6677788999999999999999999999988754
Q ss_pred CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 387 DPD---------AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 387 ~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
+|. +.+-..++..- -.+++..|..+++++++++|.....+..|+..-.+.|+.++|+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 232 22222333332 34899999999999999999999999999999999999999999998764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.5e-14 Score=130.56 Aligned_cols=275 Identities=11% Similarity=0.081 Sum_probs=161.5
Q ss_pred cCCHHHHHHHHHccCCC--Chhh-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCchHHHHH
Q 046039 168 CGEIDESRRLFDKMVSR--NTVS-WNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMV--SLLNACAKLGAIRQGEW 242 (502)
Q Consensus 168 ~~~~~~a~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~ 242 (502)
.|+++.|++.+....+. ++.. |.....+..+.|+++.|...+.++.+. .|+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 35555555555443221 1222 222233335566666666666666543 33332221 22344555666666666
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc-----------hHHHHHHHHHhcCChHHHHHHHH
Q 046039 243 IHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS-----------CWNSMVFGLAMNGYENEAIKLFS 311 (502)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~ 311 (502)
.++.+.+.. +-++.....+...|.+.|++++|.+++..+.+.... +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666665554 334555555666666666666666665555543211 22222333333344455555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-C
Q 046039 312 GLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-D 389 (502)
Q Consensus 312 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~ 389 (502)
.+.+. .+.++.....+...+...|+.++|..+++...+. +|+.... ++.+....++.+++.+.++...++ | |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 54332 2346667777778888888888888888777653 3444222 233334558888888887776643 5 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 390 AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
+..+..++..|.+.+++++|.+.|+++++..|++.. +..++.++.+.|+.++|..++++...
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556777888888888888888888888888887654 45777788888888888888776643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-14 Score=132.92 Aligned_cols=250 Identities=15% Similarity=0.110 Sum_probs=171.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCChHHHHHH
Q 046039 201 KFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCF--ELNTIVVTAIIDMYCKCGCPERALQV 278 (502)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 278 (502)
+..+|+..|....+. +..+......+..+|...+++++++.+|+.+.+... .-+..+|.+.+-.+-+.-...---+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 467788888774443 344556667777788888888888888888776541 23566666666544332222222222
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-
Q 046039 279 FNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP- 356 (502)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 356 (502)
+-......+.+|.++...|.-+++.+.|++.|++.++. .| ...+|+.+.+-+.....++.|...|+.... +.|
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~~r 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---VDPR 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---CCch
Confidence 22333445678888888888888888888888888774 34 556777777777777788888888877663 222
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
+-..|..+...|.+.++++.|+-.|+++.. .| +......++..+.+.|+.++|+++++++..++|.++-.-+..+.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 234455566777888888888888877764 34 4556667777788888888888888888888888888878888888
Q ss_pred HhcCCchHHHHHHHHhhhcCCc
Q 046039 435 AASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 435 ~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
...+++++|+..++++.+--++
T Consensus 568 ~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred HhhcchHHHHHHHHHHHHhCcc
Confidence 8888888888888887755443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-12 Score=125.43 Aligned_cols=417 Identities=14% Similarity=0.121 Sum_probs=297.8
Q ss_pred CCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHH
Q 046039 34 AGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQL 110 (502)
Q Consensus 34 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 110 (502)
.|++++|.+++.++.+ .+...|..|...|-..|+.+++...+-..-. -.+-|...|..+.....+.|++++|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3999999999999876 5667899999999999999999888765543 3455667899999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CC--Cee----eHHHHHHHHHhcCCHHHHHHHHHccCC
Q 046039 111 HGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EF--DVV----AWNSMIIGLAKCGEIDESRRLFDKMVS 183 (502)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~--~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 183 (502)
|.++++.. +++....-.-+..|-+.|+...|...|.++.. .| |.. .-..+++.+...++-+.|++.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999986 45666666778899999999999999988764 22 111 122345667778888999999988755
Q ss_pred -----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC---------------------------CCHHHHHHHHHHH
Q 046039 184 -----RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIK---------------------------PSEFTMVSLLNAC 231 (502)
Q Consensus 184 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---------------------------~~~~~~~~ll~~~ 231 (502)
-+...++.++..+.+...++.+......+...... ++... ..++-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 24557899999999999999999999888762222 22222 1233345
Q ss_pred hccCchHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC----CcchHHHHHHHHHhcCChHH
Q 046039 232 AKLGAIRQGEWIHNFLVTNC--FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK----GLSCWNSMVFGLAMNGYENE 305 (502)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~ 305 (502)
.+....+....+...+.... +.-+...|..+..+|.+.|++.+|+.+|..+... +...|-.++.+|...|.++.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 56666666666777777766 3445778899999999999999999999988764 34589999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh-------hcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 046039 306 AIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTE-------TYKIKPSIKHYSCMVDALGRAGLLEEAE 378 (502)
Q Consensus 306 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 378 (502)
|.+.|+......+ .+...-..|...+...|+.++|.+.+..+.. ..+..|...........+.+.|+.++=.
T Consensus 468 A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999998532 2344555667778899999999999998531 1144556555566677788899988765
Q ss_pred HHHHhCCCC--------C-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH--------HhcCCCCc-
Q 046039 379 KLIRSMPSD--------P-----------------DAIIWGSLLSACRKHGNIEMAKQAAKQI--------IELDKNES- 424 (502)
Q Consensus 379 ~~~~~~~~~--------~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~~p~~~- 424 (502)
.+..+|... | .......++.+-.+.++..........- ..+.-++.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 544433210 1 1112222333333333332222222111 11122222
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
..+..++.++.+.+++++|+.+...+.+...
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~ 657 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYI 657 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 3556677788899999999998888766543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.65 E-value=5e-16 Score=139.24 Aligned_cols=247 Identities=15% Similarity=0.139 Sum_probs=117.0
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcC
Q 046039 226 SLLNACAKLGAIRQGEWIHNFLVTNC-FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNG 301 (502)
Q Consensus 226 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g 301 (502)
.+...+...|++++|.+++....... .+.++..+..+.......++++.|...++++...+ +..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 55788889999999999997665554 35566777777788888999999999999998754 3366677777 7899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 046039 302 YENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLI 381 (502)
Q Consensus 302 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 381 (502)
++++|.+++....+. .+++..+..++..+...++++++..+++.+......+.+...|..+...+.+.|+.++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887664 356677788888899999999999999998765445677888889999999999999999999
Q ss_pred HhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCC
Q 046039 382 RSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEP 459 (502)
Q Consensus 382 ~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 459 (502)
+++.. .| +......++..+...|+.+++.++++...+..|+++.++..++.+|...|+.++|+.++++..
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~-------- 241 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL-------- 241 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH--------
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc--------
Confidence 99875 46 477888999999999999999999999999889999999999999999999999999999986
Q ss_pred ceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHhcC
Q 046039 460 GCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQEMG 501 (502)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 501 (502)
..+|+++.+...++.+....|+.+
T Consensus 242 ------------------~~~p~d~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 242 ------------------KLNPDDPLWLLAYADALEQAGRKD 265 (280)
T ss_dssp ------------------HHSTT-HHHHHHHHHHHT------
T ss_pred ------------------cccccccccccccccccccccccc
Confidence 346788888889998888887764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.9e-13 Score=125.47 Aligned_cols=283 Identities=13% Similarity=0.053 Sum_probs=177.7
Q ss_pred cCCchhHHHHHHHHHHhCCCCchhHH-HHHHHHHHhCCChhHHHHHHhhcCC-CCCeeeHH--HHHHHHHhcCCHHHHHH
Q 046039 101 LGLARDGAQLHGRVVKQGLEFDQFIH-NTIIYMYANCGFLSEARLMFDEVDT-EFDVVAWN--SMIIGLAKCGEIDESRR 176 (502)
Q Consensus 101 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~--~l~~~~~~~~~~~~a~~ 176 (502)
.|+++.|.+.+....+.. +++..+ ..........|+++.|...+.++.. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 588888887777655432 123333 3334444778888888888887764 23332222 12344555555555555
Q ss_pred HHHccCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC
Q 046039 177 LFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE 253 (502)
Q Consensus 177 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (502)
.++++.+ .++.....+...|.+.|++++|.+++..+.+.+..+ ......+-
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~------------------------- 228 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLE------------------------- 228 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHH-------------------------
Confidence 5555422 234455555666666666666666666666554322 11111000
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046039 254 LNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLT 330 (502)
Q Consensus 254 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 330 (502)
..++..++.......+.+...++++.+.+ .++.....+...+...|+.++|..++++..+. .|++... ++.
T Consensus 229 --~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~ 302 (398)
T PRK10747 229 --QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLI 302 (398)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHH
Confidence 01112222222233344555555555543 35556777778888888888888888887774 4444322 233
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHH
Q 046039 331 ACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRKHGNIEMA 409 (502)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 409 (502)
+....++.+++.+..+...+ ..+-|+..+..+...+.+.+++++|.+.|+.... .|+...+..+...+.+.|+.++|
T Consensus 303 ~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred hhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33455889999999998887 4455667778889999999999999999998876 48988888999999999999999
Q ss_pred HHHHHHHHhc
Q 046039 410 KQAAKQIIEL 419 (502)
Q Consensus 410 ~~~~~~~~~~ 419 (502)
.+++++.+.+
T Consensus 381 ~~~~~~~l~~ 390 (398)
T PRK10747 381 AAMRRDGLML 390 (398)
T ss_pred HHHHHHHHhh
Confidence 9999998774
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-12 Score=122.42 Aligned_cols=117 Identities=9% Similarity=0.008 Sum_probs=65.1
Q ss_pred hCCChhHHHHHHhhcCC-CCCeee-HHHHHHHHHhcCCHHHHHHHHHccCC--CCh--hhHHHHHHHHHhCCChHHHHHH
Q 046039 135 NCGFLSEARLMFDEVDT-EFDVVA-WNSMIIGLAKCGEIDESRRLFDKMVS--RNT--VSWNSMISGYVRNVKFKEALEL 208 (502)
Q Consensus 135 ~~g~~~~a~~~~~~~~~-~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~~~ 208 (502)
..|+++.|.+.+.+... .|++.. +-....+..+.|+.+.|.+.+.+..+ |+. .........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 35666666666655443 232222 22223445555666666666655422 222 1222345666667777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC
Q 046039 209 FREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCF 252 (502)
Q Consensus 209 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 252 (502)
++.+.+.. |-+......+...+...|+++.+.+.+..+.+.+.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 77776664 44555666666666777777777777777666653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-12 Score=113.70 Aligned_cols=350 Identities=12% Similarity=0.097 Sum_probs=245.8
Q ss_pred CCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC----CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccH
Q 046039 16 LAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK----PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTY 91 (502)
Q Consensus 16 ~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 91 (502)
.+-++.++..+++-. +|-...+.|..++++... -+..+||.+|.+-.-. ...+++.+|... .++||..|+
T Consensus 203 ~PKT~et~s~mI~Gl-~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisq-km~Pnl~Tf 276 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGL-CKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQ-KMTPNLFTF 276 (625)
T ss_pred cCCCchhHHHHHHHH-HHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHh-hcCCchHhH
Confidence 466789999999999 899999999999999865 5667888887664333 337889999988 899999999
Q ss_pred HHHHHHHHhcCCchh----HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH-HHHHHhhcCC-----------CCCe
Q 046039 92 PSLFKAYAQLGLARD----GAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSE-ARLMFDEVDT-----------EFDV 155 (502)
Q Consensus 92 ~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~-----------~~~~ 155 (502)
|.++.+.++.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+ +..++..+.. +.+.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998765 56788899999999999999999999999888755 4444433321 2344
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHccCC--------CC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 046039 156 VAWNSMIIGLAKCGEIDESRRLFDKMVS--------RN---TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTM 224 (502)
Q Consensus 156 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 224 (502)
..|..-+..|.+..+.+.|.++..-+.. ++ ..-|..+....++....+.-..+|+.|.-.-+-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 4567778888899999988887765522 22 234667778888888999999999999888788999999
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhc-CCh
Q 046039 225 VSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMN-GYE 303 (502)
Q Consensus 225 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 303 (502)
..++++....|.++-.-+++..+...|..........+...+++..- .++......+-.+.++. -++
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887755444444434433333220 11111111111111110 011
Q ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHH---HHHHHHHhcCCHHHHHH
Q 046039 304 -NEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYS---CMVDALGRAGLLEEAEK 379 (502)
Q Consensus 304 -~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~ 379 (502)
+.....-.+|++... .....+.++-.+.+.|..++|.+++..+.+++.-.|.....+ .+++.-.+.++...|..
T Consensus 505 ~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 111222334444433 445556666667788888888888888755433333333444 55566667788888888
Q ss_pred HHHhCC
Q 046039 380 LIRSMP 385 (502)
Q Consensus 380 ~~~~~~ 385 (502)
.++-+.
T Consensus 583 ~lQ~a~ 588 (625)
T KOG4422|consen 583 VLQLAS 588 (625)
T ss_pred HHHHHH
Confidence 887774
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.9e-13 Score=112.33 Aligned_cols=310 Identities=13% Similarity=0.053 Sum_probs=162.2
Q ss_pred CCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC-CChh------hHHHHHHHHHhCCChHHHH
Q 046039 136 CGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS-RNTV------SWNSMISGYVRNVKFKEAL 206 (502)
Q Consensus 136 ~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~------~~~~l~~~~~~~~~~~~a~ 206 (502)
.++.++|.+.|-+|.. +.+..+-.+|.+.|-+.|..+.|+++-..+.+ ||.. +...|..-|...|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4556666666666653 12223334555666666666666666666543 2211 2233445555666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 046039 207 ELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG 286 (502)
Q Consensus 207 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 286 (502)
.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+...- +..
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---IAq---------------------- 181 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---IAQ---------------------- 181 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---HHH----------------------
Confidence 6666665543 33344455555566666666666666665555443322110 011
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 046039 287 LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVD 366 (502)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 366 (502)
.|..+...+....+.+.|..++.+..+.+.+ ....-..+.+.....|+++.|.+.++.+.+. +..--+.+...|..
T Consensus 182 --fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~ 257 (389)
T COG2956 182 --FYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYE 257 (389)
T ss_pred --HHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHH
Confidence 2223333333444555555555555554322 2222223344455556666666666655543 22222344455555
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh--cCCchHH
Q 046039 367 ALGRAGLLEEAEKLIRSMPSD-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA--SYQFEEA 443 (502)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A 443 (502)
+|...|+.++....+..+... +....-..+...-....-.+.|...+.+-+...|+-..++..+.--... .|++.+-
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~s 337 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKES 337 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhh
Confidence 666666666666655554432 3333333344444444445556666666666666544444444322222 2446666
Q ss_pred HHHHHHhhhcCCccCCceeEEEECCEEEEEEe
Q 046039 444 MEERLLMKEVKIEKEPGCSLIEVDGEVHEFVA 475 (502)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (502)
+..++.|....++..|.|..-..+-..+.+.|
T Consensus 338 L~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W 369 (389)
T COG2956 338 LDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYW 369 (389)
T ss_pred HHHHHHHHHHHHhhcCCceecccCCcceeeee
Confidence 77888888888888888887777777776664
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-12 Score=112.98 Aligned_cols=356 Identities=13% Similarity=0.078 Sum_probs=251.1
Q ss_pred CcccHHHHHH--HHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHH
Q 046039 87 QRLTYPSLFK--AYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIG 164 (502)
Q Consensus 87 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~ 164 (502)
+...|..-+. .+.+.|....|...+...+.. .|..-..|..|.... .+.+.+..+...+......-.--.+..+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 3334444333 345677888888888777664 344555555554443 3344443333222211111111133456
Q ss_pred HHhcCCHHHHHHHHHccCC---C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCchH
Q 046039 165 LAKCGEIDESRRLFDKMVS---R-NTVSWNSMISGYVRNVKFKEALELFREMQEQNI--KPSEFTMVSLLNACAKLGAIR 238 (502)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~ 238 (502)
+....+.+++..-.+.... | +...-+....+.-...++++|+.+|+++.+... -.|..+|..++-.-.....
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk-- 314 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK-- 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH--
Confidence 6666677777666655533 2 233333444555678899999999999998741 1256677776644322111
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046039 239 QGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS---CWNSMVFGLAMNGYENEAIKLFSGLQS 315 (502)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (502)
..++.+-.-.--+.-+.|...+.+-|.-.++.++|...|+...+.|+. +|+.+..-|....+...|++.+++.++
T Consensus 315 --Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 315 --LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred --HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 222222211112445678888899999999999999999998886654 899999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHH
Q 046039 316 SNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIW 393 (502)
Q Consensus 316 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 393 (502)
-++ -|...|..+.++|.-.+.+.-|+-+|++... --|.|...|.+|..+|.+.++.++|+.-|.....- .+...+
T Consensus 393 i~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 393 INP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred cCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 643 3788999999999999999999999999875 33446899999999999999999999999988653 455789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIE-------LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
..|+..|-+.++.++|.+.|++.++ .+|....+...|+.-+.+.+++++|..+.......
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 9999999999999999999999887 34545556666888899999999999877666543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-11 Score=111.26 Aligned_cols=374 Identities=12% Similarity=0.055 Sum_probs=208.4
Q ss_pred CChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHH
Q 046039 66 STPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLM 145 (502)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 145 (502)
.+.+.|.-++....+- ++.+. -|..++++..-++.|..+++...+. ++.+..+|.+-...=-..|+.+...++
T Consensus 390 E~~~darilL~rAvec--cp~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 390 EEPEDARILLERAVEC--CPQSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred cChHHHHHHHHHHHHh--ccchH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3444466666555542 22222 2333444455566666666666554 455666666555555566666666555
Q ss_pred HhhcCC-------CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC------CChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 046039 146 FDEVDT-------EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS------RNTVSWNSMISGYVRNVKFKEALELFREM 212 (502)
Q Consensus 146 ~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 212 (502)
+.+... ..+...|..=...|-..|..-.+..+....+. .--.+|+.-...|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 544321 12222333334444444444444444444321 12335666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---Ccch
Q 046039 213 QEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSC 289 (502)
Q Consensus 213 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~ 289 (502)
++. .+-+...|......--..|..+....+++++.... +.....+-.....+...|+...|..++..+-+. +...
T Consensus 543 lqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseei 620 (913)
T KOG0495|consen 543 LQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEI 620 (913)
T ss_pred Hhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHH
Confidence 554 23344455555544455566666666666666653 233444444455555566666666666654432 2335
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 046039 290 WNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALG 369 (502)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (502)
|.+-+.......+++.|..+|.+.... .|+...|.--+..-...++.++|.+++++..+ .++.-...|..+.+.+.
T Consensus 621 wlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHH
Confidence 666666666666666666666666553 34555555444444455666666666666665 33334555666666666
Q ss_pred hcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 046039 370 RAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
+.++++.|...|..-... | .+..|..|...--+.|+..+|..+++++.-.+|.++.+|...+.+-.+.|+.++|..+.
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666555433 3 34456666666666666666666666666666666666666666666666666666655
Q ss_pred HHhhh
Q 046039 448 LLMKE 452 (502)
Q Consensus 448 ~~~~~ 452 (502)
.++.+
T Consensus 777 akALQ 781 (913)
T KOG0495|consen 777 AKALQ 781 (913)
T ss_pred HHHHH
Confidence 44443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-12 Score=122.52 Aligned_cols=286 Identities=11% Similarity=0.035 Sum_probs=180.7
Q ss_pred HhcCCchhHHHHHHHHHHhCCCCch-hHHHHHHHHHHhCCChhHHHHHHhhcCC-CCCee--eHHHHHHHHHhcCCHHHH
Q 046039 99 AQLGLARDGAQLHGRVVKQGLEFDQ-FIHNTIIYMYANCGFLSEARLMFDEVDT-EFDVV--AWNSMIIGLAKCGEIDES 174 (502)
Q Consensus 99 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~~~a 174 (502)
...|+++.|.+.+....+.. |++ ..+.....++...|+.+.|.+.+.+... .|+.. ........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35577777777776665542 332 2333445566667777777777766543 23332 233346666777777777
Q ss_pred HHHHHccCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHH---hccCchHHHHHHHHHH
Q 046039 175 RRLFDKMVS--R-NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSL-LNAC---AKLGAIRQGEWIHNFL 247 (502)
Q Consensus 175 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~---~~~~~~~~a~~~~~~~ 247 (502)
...++.+.+ | ++.++..+...+...|++++|.+.+..+.+.++. +...+..+ ..++ ...+..+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~--------- 242 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMAD--------- 242 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 777777743 3 5667888999999999999999999999998743 33333211 1111 1111111
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 046039 248 VTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYIS 324 (502)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 324 (502)
...+...+.+...++ .++..+..++..+...|+.++|.+.+++..+.........
T Consensus 243 ----------------------~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~ 300 (409)
T TIGR00540 243 ----------------------EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS 300 (409)
T ss_pred ----------------------cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch
Confidence 112233333333332 2455666666677777777777777777776432221111
Q ss_pred H-HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh--CC-CCCCHHHHHHHHHHH
Q 046039 325 F-IAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRS--MP-SDPDAIIWGSLLSAC 400 (502)
Q Consensus 325 ~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~-~~~~~~~~~~l~~~~ 400 (502)
+ ..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. .. ..|+...+..++..+
T Consensus 301 ~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll 380 (409)
T TIGR00540 301 LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAF 380 (409)
T ss_pred hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHH
Confidence 1 1111222345778888888888876432222225667889999999999999999993 33 368888888999999
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 046039 401 RKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~ 418 (502)
.+.|+.++|.+++++.+.
T Consensus 381 ~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 381 DQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999999876
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.2e-12 Score=105.56 Aligned_cols=282 Identities=10% Similarity=0.088 Sum_probs=181.1
Q ss_pred cCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeee------HHHHHHHHHhcCCHHHH
Q 046039 101 LGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVA------WNSMIIGLAKCGEIDES 174 (502)
Q Consensus 101 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a 174 (502)
+++.++|.++|-+|.+.. +-+..+..+|.+.|.+.|..+.|+++...+..+||... ...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888888888887753 33556667888888888888888888888776666542 33455668888999999
Q ss_pred HHHHHccCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCchHHHHHHHHHH
Q 046039 175 RRLFDKMVSRN---TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEF----TMVSLLNACAKLGAIRQGEWIHNFL 247 (502)
Q Consensus 175 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~ 247 (502)
+.+|..+.+.. ......|+..|-...+|++|++.-+++.+.+-.+... .|.-+...+....+++.|...+.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99998887633 4467788999999999999999999998876444321 2222333333334444444444444
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046039 248 VTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIA 327 (502)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 327 (502)
.+.+ +..+. +--.+...+...|+++.|++.++...+.+..--..+...
T Consensus 207 lqa~-~~cvR-------------------------------Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 207 LQAD-KKCVR-------------------------------ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred HhhC-cccee-------------------------------hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 4432 11122 223344555666777777777777766654444556677
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHH-HHHhCCCCCCHHHHHHHHHHHHh---c
Q 046039 328 VLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEK-LIRSMPSDPDAIIWGSLLSACRK---H 403 (502)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~l~~~~~~---~ 403 (502)
|..+|...|+.++...++..+.+. .+....-..+...-....-.+.|.. +.+.+..+|+...+..++..-.. -
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence 777888888888888888877754 2333333334444333444444444 44566667888888888776543 2
Q ss_pred CCHHHHHHHHHHHHh
Q 046039 404 GNIEMAKQAAKQIIE 418 (502)
Q Consensus 404 ~~~~~A~~~~~~~~~ 418 (502)
|...+....+..++.
T Consensus 332 g~~k~sL~~lr~mvg 346 (389)
T COG2956 332 GRAKESLDLLRDMVG 346 (389)
T ss_pred cchhhhHHHHHHHHH
Confidence 345555556666654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-11 Score=107.58 Aligned_cols=251 Identities=14% Similarity=0.080 Sum_probs=117.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
+.+.-+.|+.+.+-.++.+.-+.--.++...+....+.....|+.+.|..-..++.+.+ +.++.+.....++|.+.|++
T Consensus 125 A~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 125 AEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred HHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccH
Confidence 34444444455555544444443213333333344444444444454444444444443 22344444444555555555
Q ss_pred HHHHHHHhcCCCCCcc-----------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHH
Q 046039 273 ERALQVFNTVPKKGLS-----------CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQA 341 (502)
Q Consensus 273 ~~A~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 341 (502)
.....++.++.+.+.. +|..++.-....+..+.-...++..-.. .+.++..-..++.-+...|+.++|
T Consensus 204 ~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A 282 (400)
T COG3071 204 QALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEA 282 (400)
T ss_pred HHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHH
Confidence 5555555444443211 3444444444444444444444444332 233444444555555556666666
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046039 342 KDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419 (502)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 419 (502)
.++.++..++ +..|+.. ..-.+.+-++...-++..++.... | ++..+.+|+..|.+.+.|.+|...|+.+++.
T Consensus 283 ~~~i~~~Lk~-~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 283 QEIIEDALKR-QWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHHHHHHh-ccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 6666555554 3333311 111223344444333333332211 1 2345556666666666666666666666555
Q ss_pred CCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 420 DKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 420 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.|+ ...+..++.+|.+.|+..+|..++++..
T Consensus 358 ~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 358 RPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred CCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 554 3345566666666666666666555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-11 Score=103.94 Aligned_cols=276 Identities=14% Similarity=0.066 Sum_probs=191.7
Q ss_pred CCChhHHHHHHhhcCCCC--CeeeHHHHHHHHHhcCCHHHHHHHHHccCCC----ChhhHHHHHHHHHhCCChHHHHHHH
Q 046039 136 CGFLSEARLMFDEVDTEF--DVVAWNSMIIGLAKCGEIDESRRLFDKMVSR----NTVSWNSMISGYVRNVKFKEALELF 209 (502)
Q Consensus 136 ~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 209 (502)
.|+|..|++...+..+.. ....|..-..+..+.|+.+.+-+.+.+.-++ +...+-.........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 456666666665544322 2223333344555566666666666665332 3334455556666777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCChHHHHHHHhcC
Q 046039 210 REMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNT-------IVVTAIIDMYCKCGCPERALQVFNTV 282 (502)
Q Consensus 210 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~ 282 (502)
.++.+.+ +-+.........+|.+.|++.....++..+.+.+.-.+. .++..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7776665 445556666677777777777777777777776644332 34455555444455555555677766
Q ss_pred CC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChh
Q 046039 283 PK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIK 359 (502)
Q Consensus 283 ~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 359 (502)
++ .++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ....-.+.+.++...-++..+.-.+.++..| .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 64 4677777888888999999999999998888877766 2223346677888888888888777545444 6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
.+..|...|.+.+.+.+|...|+...+ .|+..+|.-+..++.+.|+..+|.++.++.+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 778899999999999999999997765 49999999999999999999999999999885
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.50 E-value=8e-12 Score=109.36 Aligned_cols=197 Identities=14% Similarity=0.016 Sum_probs=153.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046039 256 TIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTAC 332 (502)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 332 (502)
...+..+...+...|++++|...+++..+. +...+..+...+...|++++|.+.+++..+... .+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 455566666777777777777777665432 234666777778888888888888888877643 3556677778888
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHH
Q 046039 333 NHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAK 410 (502)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~ 410 (502)
...|++++|.+.++........+.....+..+..++...|++++|...+++.... | +...+..++..+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999998764222334556777888899999999999999887642 3 4667888999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 411 QAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
..++++++..|+++..+..++.++...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999988888888889999999999999999988877543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-10 Score=108.80 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=110.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHH
Q 046039 324 SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACR 401 (502)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~ 401 (502)
.|......+...++.++|...+.+... ..+.....|......+...|..++|.+.|..... +| ++.+..+++..+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 345566677788888999888888765 4456677888888889999999999999877654 46 5678899999999
Q ss_pred hcCCHHHHHH--HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 402 KHGNIEMAKQ--AAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 402 ~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+.|+..-|.. ++..+++++|.++..|..++.++...|+.++|.+.|+...+-.
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9999888888 9999999999999999999999999999999999999987654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-11 Score=114.94 Aligned_cols=164 Identities=16% Similarity=0.136 Sum_probs=116.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC--CCC---
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQS-----SNL-KPDY-ISFIAVLTACNHSGKVNQAKDYFTLMTETYK--IKP--- 356 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--- 356 (502)
+++.|..+|.+.|++++|...+++..+ .|. .|.. ..++.+...|...+++++|..+++...+.+. +.+
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 444444455555555554444444322 121 2222 3456667778888999999988887665432 222
Q ss_pred -ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC
Q 046039 357 -SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD---------PD-AIIWGSLLSACRKHGNIEMAKQAAKQIIE----LDK 421 (502)
Q Consensus 357 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~p 421 (502)
-..+++.|...|...|++++|.++++++... +. ...++.|...|.+.+++.+|.+.|.+... ..|
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 2467889999999999999999999887531 22 34678899999999999999999998875 445
Q ss_pred CCc---chHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 422 NES---CGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 422 ~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
+++ ..|..|+.+|.+.|++++|.++...+..
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 554 5788999999999999999999888764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.8e-11 Score=104.58 Aligned_cols=83 Identities=16% Similarity=0.098 Sum_probs=56.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhcCCCCCC-cccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCc-hhHHHHHHHHHH
Q 046039 57 TIIRGFSQSSTPRNAILLFIDMLVTSPIQPQ-RLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFD-QFIHNTIIYMYA 134 (502)
Q Consensus 57 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 134 (502)
....-+.++|++++|++.|.+... ..|+ +..|.....+|...|+|+.+.+--...++. .|+ +-.+..-.+++-
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 344556777888888888888774 3577 566777777777888888877777776664 333 345556666777
Q ss_pred hCCChhHHHH
Q 046039 135 NCGFLSEARL 144 (502)
Q Consensus 135 ~~g~~~~a~~ 144 (502)
..|++++|+.
T Consensus 195 ~lg~~~eal~ 204 (606)
T KOG0547|consen 195 QLGKFDEALF 204 (606)
T ss_pred hhccHHHHHH
Confidence 7777776643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.6e-11 Score=112.54 Aligned_cols=249 Identities=13% Similarity=0.124 Sum_probs=180.2
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC----CCcchHHHHHHHHhcCCChHHHHHHHHHhHhc
Q 046039 6 KIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK----PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVT 81 (502)
Q Consensus 6 ~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 81 (502)
.+|..+...|+.|+..+|..++..| +..|+++.|- +|.-|.- -+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarY-c~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARY-CTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHH-cccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 4678899999999999999999999 9999999998 8887764 45567889999988888877663
Q ss_pred CCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHH-------hCCCCchh--------------HHHHHHHHHHhCCChh
Q 046039 82 SPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVK-------QGLEFDQF--------------IHNTIIYMYANCGFLS 140 (502)
Q Consensus 82 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~--------------~~~~l~~~~~~~g~~~ 140 (502)
.|.+.+|..|..+|...|+...-..+=+.+.. .|+..... .-...+....-.|-++
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 47888999999999999987652222222222 22111111 1122333344556677
Q ss_pred HHHHHHhhcCCCCCeeeHHHHHHHHHhc-CCHHHHHHHHHccCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 046039 141 EARLMFDEVDTEFDVVAWNSMIIGLAKC-GEIDESRRLFDKMVS-RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIK 218 (502)
Q Consensus 141 ~a~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 218 (502)
.+.+++..++...-......+++-+... ..+++-........+ +++.+|..++.+-..+|+.+.|..++.+|.+.|++
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 7777777665411111111123333333 334555555555555 89999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 046039 219 PSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGC 271 (502)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 271 (502)
.+.+-|..++-+ .++...++.+++-|.+.|+.|+..|+...+..+...|.
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 998888877754 78889999999999999999999998877766665443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-08 Score=92.68 Aligned_cols=401 Identities=14% Similarity=0.136 Sum_probs=243.4
Q ss_pred hHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHh
Q 046039 38 NYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQ 117 (502)
Q Consensus 38 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 117 (502)
+.++....+|+ ..|-..+..+..+|+.......|...+..-.+......|...+......+-++.+..++++.++.
T Consensus 92 er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 92 ERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 44555555553 46767777788888888888888888775455556668888888888888888888888888764
Q ss_pred CCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC---------CCCee--------------------------------
Q 046039 118 GLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT---------EFDVV-------------------------------- 156 (502)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~-------------------------------- 156 (502)
++..-+..+..+++.+++++|.+.+..+.. +.+-.
T Consensus 168 ----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 168 ----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred ----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 333466677778888888888877766543 11222
Q ss_pred ------eHHHHHHHHHhcCCHHHHHHHHHccCCC--ChhhHHHHHHHHHhCC----------------------ChHHHH
Q 046039 157 ------AWNSMIIGLAKCGEIDESRRLFDKMVSR--NTVSWNSMISGYVRNV----------------------KFKEAL 206 (502)
Q Consensus 157 ------~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~----------------------~~~~a~ 206 (502)
.|.+|.+.|.+.|.+++|.++|++.+.. ++..|+.+.++|+.-. +++-.+
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 2445555555555555555555554332 2222333333332111 011112
Q ss_pred HHHHHHHHCC-----------CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC------chhHHHHHHHHHHhc
Q 046039 207 ELFREMQEQN-----------IKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFEL------NTIVVTAIIDMYCKC 269 (502)
Q Consensus 207 ~~~~~m~~~~-----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~ 269 (502)
..|+.+.+.. -+.+...+..-.. ...|+..+....+.++.+.- .| -...+..+...|-..
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhc
Confidence 2222222111 0111111111111 11234445555565555431 22 134567788889999
Q ss_pred CChHHHHHHHhcCCCCCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------------CHHHH
Q 046039 270 GCPERALQVFNTVPKKGLS-------CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP-----------------DYISF 325 (502)
Q Consensus 270 g~~~~A~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-----------------~~~~~ 325 (502)
|+.+.|..+|++..+-+.. +|..-...-.++.+++.|++++++.....-.| +...|
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 9999999999988875433 55556666667888999999888876432111 12234
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C-CCHH-HHHHHHHHHH
Q 046039 326 IAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--D-PDAI-IWGSLLSACR 401 (502)
Q Consensus 326 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~-~~~~l~~~~~ 401 (502)
...+..-...|-++....+++.+..-.-..| .+.-.....+....-++++.++|++-.. + |++. .|+..+.-+.
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTP--qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATP--QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 4555555556788888888888876522233 2223333444566778999999998764 2 6554 7777665544
Q ss_pred h---cCCHHHHHHHHHHHHhcCCCCc--chHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 402 K---HGNIEMAKQAAKQIIELDKNES--CGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 402 ~---~~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
+ ....+.|..+|+++++.-|+.. ++|...+..-.+-|.-..|.++++++.
T Consensus 559 ~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 3479999999999999766422 345555555556788888999888864
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5e-11 Score=116.98 Aligned_cols=260 Identities=13% Similarity=-0.020 Sum_probs=188.6
Q ss_pred ChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh---------ccCchHHHHHHHHHHHHc
Q 046039 185 NTVSWNSMISGYVR-----NVKFKEALELFREMQEQNIKPSEFTMVSLLNACA---------KLGAIRQGEWIHNFLVTN 250 (502)
Q Consensus 185 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~ 250 (502)
+...|...+.+-.. .+++++|...|++..+.. +.+...+..+..++. ..+++++|...++++.+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44555555554321 234679999999998874 445556666555443 234588999999999988
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046039 251 CFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIA 327 (502)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 327 (502)
+ +.+...+..+...+...|++++|...|+++.+.+ ...+..+...+...|++++|+..+++..+.++. +...+..
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~ 411 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGIT 411 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHH
Confidence 6 4567888888889999999999999999877654 347888899999999999999999999986543 2223333
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcC
Q 046039 328 VLTACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PD-AIIWGSLLSACRKHG 404 (502)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~ 404 (502)
++..+...|++++|...++++... .+| ++..+..+..++...|+.++|...++++... |+ ...++.+...|...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 444566689999999999998763 234 4555677888899999999999999987654 44 334556666777777
Q ss_pred CHHHHHHHHHHHHh---cCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 405 NIEMAKQAAKQIIE---LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 405 ~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
++|...++++++ ..|.++.. +..+|.-.|+.+.+... +++.+.+.
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 488888888776 33444433 55567778888887776 77776543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-09 Score=94.99 Aligned_cols=274 Identities=10% Similarity=-0.015 Sum_probs=177.1
Q ss_pred CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhh---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046039 152 EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVS---WNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLL 228 (502)
Q Consensus 152 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 228 (502)
+.|+.....+..++...|+.++|+..|++..--|+.+ .....-.+.+.|+.+....+...+.... .-+...|..-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 4566666777777777777777777777764443332 2233344556777777777766665432 22222333333
Q ss_pred HHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHH
Q 046039 229 NACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENE 305 (502)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 305 (502)
......++++.|..+-++.++.+ +.+...+-.-...+...|+.++|.=.|+.... .+..+|.-|+..|...|.+.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 34455667777777777776654 23444444445566677777777777776543 245578888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHhc-CCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 306 AIKLFSGLQSSNLKPDYISFIAVL-TACNH-SGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGLLEEAEKLIR 382 (502)
Q Consensus 306 a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 382 (502)
|.-.-+..... ...+..+++.+. ..|.. ..--++|..+++...+ +.|+ ....+.+...+...|..++++.+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 77766555543 233555555552 33332 2345677788777653 3454 4455667777888888888888887
Q ss_pred hCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 383 SMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 383 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
.... .||....+.|+..+...+.+++|++.|..++.++|++......|-
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 7654 478888888888888888888888888888888888776555443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.1e-09 Score=90.36 Aligned_cols=269 Identities=11% Similarity=0.010 Sum_probs=201.9
Q ss_pred CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHH
Q 046039 182 VSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTA 261 (502)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (502)
...|+.....+..++...|+.++|...|++.+..+ +-+........-.+...|+.+....+...+.... ..+...+-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 33578888999999999999999999999987653 2233333333444567888888888887776643 223333333
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCH
Q 046039 262 IIDMYCKCGCPERALQVFNTVPKKGLS---CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKV 338 (502)
Q Consensus 262 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 338 (502)
-+......++++.|+.+-++..+.+.. .+-.-..++...|+.++|.-.|+..+... +.+...|..++.+|...|.+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 344455678899999999887765544 44444567889999999999999998752 34668999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHH-HHHH-hcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 339 NQAKDYFTLMTETYKIKPSIKHYSCMV-DALG-RAGLLEEAEKLIRSMPS-DPD-AIIWGSLLSACRKHGNIEMAKQAAK 414 (502)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 414 (502)
.+|.-.-....+ -++.+..+...+. ..+. ...--++|..++++... +|+ ....+.+...|...|.++.++.+++
T Consensus 385 kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 999888777766 3445555555442 2222 33346889999988765 475 3466778889999999999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 415 QIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 415 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
+.+...|+ ...+..|+.++...+.+++|.+.|....+.+++
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 99988887 457899999999999999999999988765543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=104.10 Aligned_cols=229 Identities=14% Similarity=0.070 Sum_probs=191.7
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHh
Q 046039 223 TMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAM 299 (502)
Q Consensus 223 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~ 299 (502)
--..+.++|.+.|.+.+|++.++..++. .|-+.+|-.|.+.|.+..++..|+.+|.+-.+. ++....-+...+..
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3456788899999999999999888876 456677888889999999999999999887664 33344556777888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 046039 300 NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEK 379 (502)
Q Consensus 300 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 379 (502)
.++.++|.++|+...+.. ..+......+...|.-.++++-|..+++++... |+ .++..|+.+..+|.-.+++|-+..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 899999999999998864 336666777777888889999999999999886 54 467788889999999999999999
Q ss_pred HHHhCCC---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 380 LIRSMPS---DPD--AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 380 ~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
-|++... +|+ ..+|..+.......|++..|.+.|+-++..+|++...++.|+..-.+.|+.++|..++....+..
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8887654 243 45899999999999999999999999999999999999999999999999999999999988765
Q ss_pred Cc
Q 046039 455 IE 456 (502)
Q Consensus 455 ~~ 456 (502)
+.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 53
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-09 Score=89.47 Aligned_cols=392 Identities=11% Similarity=0.009 Sum_probs=221.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHH-HHHHHH
Q 046039 55 WNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHN-TIIYMY 133 (502)
Q Consensus 55 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~ 133 (502)
+++.+..+.+..++..|++++..-.+. -+.+......+..+|-...++..|-..++++-.. .|...-|. .-...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 445555556666677777776666554 1224445555666666666677777777666553 23322221 223445
Q ss_pred HhCCChhHHHHHHhhcCCCCCeeeHHHHHHH--HHhcCCHHHHHHHHHccC-CCChhhHHHHHHHHHhCCChHHHHHHHH
Q 046039 134 ANCGFLSEARLMFDEVDTEFDVVAWNSMIIG--LAKCGEIDESRRLFDKMV-SRNTVSWNSMISGYVRNVKFKEALELFR 210 (502)
Q Consensus 134 ~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 210 (502)
.+.+.+..|+++...|...++...-..-+.+ ..+.+++..+..++++.. +.+..+.+.......+.|+++.|.+-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 5666667777776666643333222222222 234566777777777776 3556666666666677778888877777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC-------------ch---------------hHHHHH
Q 046039 211 EMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFEL-------------NT---------------IVVTAI 262 (502)
Q Consensus 211 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~~l 262 (502)
...+-+--.....|+..+ ++.+.|+.+.|.++..++++.|++. |. ..+|.-
T Consensus 169 aAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 776644233344555444 4556677777777777777765431 11 123333
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC-----CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 046039 263 IDMYCKCGCPERALQVFNTVPKK-----GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK 337 (502)
Q Consensus 263 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 337 (502)
...+.+.|+++.|.+.+-.|+.+ |+++...+.-. -..+++.+..+-+.-+.+.++ ....||..++-.||+..-
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHH
Confidence 33456789999999999998754 55555444322 223555556666666666544 456788888888999888
Q ss_pred HHHHHHHHHHhhhhcCCC-CChhHHHHHHHHHH-hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC----HHHHH
Q 046039 338 VNQAKDYFTLMTETYKIK-PSIKHYSCMVDALG-RAGLLEEAEKLIRSMPSDPDAIIWGSLLSAC-RKHGN----IEMAK 410 (502)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~~~~~----~~~A~ 410 (502)
++.|-.++.+-... .+. .+...|+ |++++. ..-..++|.+-++.+........-...+..- .+..+ ...|+
T Consensus 326 f~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai 403 (459)
T KOG4340|consen 326 FDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAV 403 (459)
T ss_pred HhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 88888887654321 111 1233333 344443 3345666666555443211000111111111 11111 22344
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccC
Q 046039 411 QAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKE 458 (502)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 458 (502)
+-+++.++.- ..+....++.|++..++..+++.|+.-.+..-+.+
T Consensus 404 ~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd 448 (459)
T KOG4340|consen 404 NEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHD 448 (459)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccc
Confidence 4444544432 12567778899999999999999998776654443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-08 Score=92.68 Aligned_cols=411 Identities=12% Similarity=0.041 Sum_probs=225.7
Q ss_pred HHHHHhhhCCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHh
Q 046039 24 SRILAFCTSPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQ 100 (502)
Q Consensus 24 ~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 100 (502)
-+-+..+ ...|++++|.+...++.. .+...+.+=+-++.+.+++++|+.+.+.-. ++..+...+.-=.-+..+
T Consensus 16 ~t~ln~~-~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 16 LTDLNRH-GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHh-ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---hhhhcchhhHHHHHHHHH
Confidence 3345566 677888888888887765 344566777777788888888875543332 111111111112233347
Q ss_pred cCCchhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHH-HHhcCCHHHHHHHH
Q 046039 101 LGLARDGAQLHGRVVKQGLEF-DQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIG-LAKCGEIDESRRLF 178 (502)
Q Consensus 101 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~ 178 (502)
.+..++|+..++ |..+ +..+...-...+.+.|++++|..+|+.+.. .+...+...+.+ +...+....+. +.
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k-n~~dd~d~~~r~nl~a~~a~l~~~-~~ 164 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK-NNSDDQDEERRANLLAVAAALQVQ-LL 164 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHhhhHH-HH
Confidence 788888888777 2232 334666666777788888888888887752 222222221111 11111111111 22
Q ss_pred HccCCCChhhHHH---HHHHHHhCCChHHHHHHHHHHHHCC-------CCCCH-------HHHHHHHHHHhccCchHHHH
Q 046039 179 DKMVSRNTVSWNS---MISGYVRNVKFKEALELFREMQEQN-------IKPSE-------FTMVSLLNACAKLGAIRQGE 241 (502)
Q Consensus 179 ~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~-------~~~~~ll~~~~~~~~~~~a~ 241 (502)
+........+|.. ....+...|++.+|+++++..+..+ -..+. ..-..+.-.+...|+-++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 2222222223322 2334445666666666666552110 00000 01122333444556666666
Q ss_pred HHHHHHHHcCCCCchh----HHHHHHHH---------------------------------------------HHhcCCh
Q 046039 242 WIHNFLVTNCFELNTI----VVTAIIDM---------------------------------------------YCKCGCP 272 (502)
Q Consensus 242 ~~~~~~~~~~~~~~~~----~~~~l~~~---------------------------------------------~~~~g~~ 272 (502)
.++..+++... +|.. ..|.|+.. ..-.+..
T Consensus 245 ~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~ 323 (652)
T KOG2376|consen 245 SIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM 323 (652)
T ss_pred HHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 66666655542 2211 11212111 0111222
Q ss_pred HHHHHHHhcCCCCCc-chHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH---
Q 046039 273 ERALQVFNTVPKKGL-SCWNSMVFGLA--MNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFT--- 346 (502)
Q Consensus 273 ~~A~~~~~~~~~~~~-~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--- 346 (502)
+.+.++-.......+ ..+..++.... +......+.+++....+....-........+......|+++.|.+++.
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 333333333332221 23333433322 223466777777777665333334566666777888999999999998
Q ss_pred -----HhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046039 347 -----LMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--------DP-DAIIWGSLLSACRKHGNIEMAKQA 412 (502)
Q Consensus 347 -----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~A~~~ 412 (502)
.+... +.. +.+...+...+.+.++.+.|..++.+... ++ -..++.-++..-.+.|+-++|...
T Consensus 404 ~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 404 ESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 44332 333 44455677778888887777777665532 12 122445555666788999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 413 AKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 413 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
++++++.+|++..+...++.+|.+. +.+.|+.+-+.+
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999999999999888887 677887765544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-09 Score=98.84 Aligned_cols=400 Identities=14% Similarity=0.102 Sum_probs=229.8
Q ss_pred CCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCc-ccHHHHHHHHHhcCCchhH
Q 046039 32 SPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQR-LTYPSLFKAYAQLGLARDG 107 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a 107 (502)
...|+++.|+..|-.... +|...|+.-..+|...|++++|++=-.+-.+ +.|+. ..|.....++.-.|++++|
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHhcccHHHH
Confidence 578999999999998654 7888899999999999999999877666653 56774 4899999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHH------HhhcCCCC------CeeeHHHHHHHHHh--------
Q 046039 108 AQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLM------FDEVDTEF------DVVAWNSMIIGLAK-------- 167 (502)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~------~~~~~~~~------~~~~~~~l~~~~~~-------- 167 (502)
+..|.+-++.. +.+...++.+..++... .. +.+. +..+...| ....|..++..+-+
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLED--YA-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHH--HH-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999998874 44667777777776111 00 0111 11111111 01112222111111
Q ss_pred --cCCHHHHHHHHHccCCCChhhHHHHHHHHH-hCCChH----HHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCchHH
Q 046039 168 --CGEIDESRRLFDKMVSRNTVSWNSMISGYV-RNVKFK----EALELFREMQE-QNIKPSEFTMVSLLNACAKLGAIRQ 239 (502)
Q Consensus 168 --~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~----~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~ 239 (502)
..++..+.-.+.....+ .+...-.... ....+. ........+.+ .....-..-...+.++..+..+++.
T Consensus 166 l~d~r~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDEL---LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred cccHHHHHHHHHHhcCccc---cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 11111111111111000 0000000000 000000 00000000000 0000011123445566666667777
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc----------hHHHHHHHHHhcCChHHHHHH
Q 046039 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS----------CWNSMVFGLAMNGYENEAIKL 309 (502)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~a~~~ 309 (502)
+.+.+....... .+...++....+|...|.+..+...-....+.+-. +...+..+|.+.++++.++..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 777777766654 45555566666777777766666555444333221 222244466667788888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-
Q 046039 310 FSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSI-KHYSCMVDALGRAGLLEEAEKLIRSMPSD- 387 (502)
Q Consensus 310 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 387 (502)
|.+.......|+..+ +....+++....+... -+.|.. .-...-...+.+.|++..|+..|.++...
T Consensus 321 ~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 887665433333221 1223344444333332 223332 11122356677888888888888877653
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 388 P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 388 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
| |...|..-..+|.+.|++..|+.-.+..++++|+.+..|..=+.++....+|++|.+.|++..+.+.
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 5 6678888888888888888888888888888888888888888888888888888888888776553
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-11 Score=103.63 Aligned_cols=236 Identities=12% Similarity=0.082 Sum_probs=200.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 046039 190 NSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKC 269 (502)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (502)
+.+..+|.+.|-+.+|.+.|+..++. .|-+.||..|-++|.+..+++.|..++.+-++.- +.++....-..+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 57889999999999999999998886 5677799999999999999999999999988863 55666667778888999
Q ss_pred CChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 046039 270 GCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFT 346 (502)
Q Consensus 270 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 346 (502)
++.++|.++++...+. ++.+...+...|.-.++++-|+..|+++.+.|+. ++..|+.+.-+|.-.++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999987764 4556666777888899999999999999999976 88899999999999999999999999
Q ss_pred HhhhhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 347 LMTETYKIKPS--IKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 347 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
+.... ...|+ ..+|..+.......||+.-|.+-|+-.... + ....++.|...-.+.|+.++|..++..+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 98764 33344 567888888888999999999999987654 4 5668999999999999999999999999999998
Q ss_pred CcchHHHH
Q 046039 423 ESCGYVLM 430 (502)
Q Consensus 423 ~~~~~~~l 430 (502)
-......+
T Consensus 462 m~E~~~Nl 469 (478)
T KOG1129|consen 462 MAEVTTNL 469 (478)
T ss_pred ccccccce
Confidence 65544444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.7e-09 Score=97.92 Aligned_cols=406 Identities=12% Similarity=0.059 Sum_probs=252.7
Q ss_pred CCCCChhHHHHHhccCCC--CCc-chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHH-hc-----C
Q 046039 32 SPAGDINYAYLVFTQIKK--PNL-FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYA-QL-----G 102 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~-----~ 102 (502)
...|++++|+..++.... .|. .........+.+.|+.++|..+|..+.+. .|+...|...+..+. .. .
T Consensus 15 ~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhhhcccccc
Confidence 567999999999988665 444 45566778889999999999999999876 466555544444443 22 2
Q ss_pred CchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh-HHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHcc
Q 046039 103 LARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLS-EARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKM 181 (502)
Q Consensus 103 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 181 (502)
+.+....+++++...- |.......+.-.+.....+. .+...+..+..+.-+.+|+.+-..|.......-..+++...
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 4677788888887653 33222222222222222232 23333444443445566777766666555555555555544
Q ss_pred C------------------CCCh--hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHH
Q 046039 182 V------------------SRNT--VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGE 241 (502)
Q Consensus 182 ~------------------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 241 (502)
. .|+. .++..+...|...|++++|++++++.++.. |..+..|..-.+.+-+.|++.+|.
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 1 1222 244667788899999999999999999874 445778899999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc----------hH--HHHHHHHHhcCChHHHHHH
Q 046039 242 WIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS----------CW--NSMVFGLAMNGYENEAIKL 309 (502)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~--~~l~~~~~~~g~~~~a~~~ 309 (502)
..++...... .-|..+-+..+..+.+.|+.++|..++....+.+.. .| ...+.+|.+.|++..|++-
T Consensus 249 ~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 249 EAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999876 457778888889999999999999999988876522 23 4456789999999988877
Q ss_pred HHHHHHC--CC-------------CCCHHHHHHHHHHHhcCCC-------HHHHHHHHHHhhhhcCCCC-----------
Q 046039 310 FSGLQSS--NL-------------KPDYISFIAVLTACNHSGK-------VNQAKDYFTLMTETYKIKP----------- 356 (502)
Q Consensus 310 ~~~~~~~--~~-------------~p~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~----------- 356 (502)
|....+. .+ +.+..+|..+++..-+... ...|++++-.+........
T Consensus 328 ~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~ 407 (517)
T PF12569_consen 328 FHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENM 407 (517)
T ss_pred HHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccC
Confidence 7665442 01 1223344444433222111 1234444444433210000
Q ss_pred ChhHHHHHHHHH---HhcCCHHHHHHHHHh-----------CCC------CCCHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q 046039 357 SIKHYSCMVDAL---GRAGLLEEAEKLIRS-----------MPS------DPDAIIWGSLLSACRKHG-NIEMAKQAAKQ 415 (502)
Q Consensus 357 ~~~~~~~l~~~~---~~~g~~~~A~~~~~~-----------~~~------~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~ 415 (502)
+..--..+..-. .+...-+++...-.+ ... .+|+ ++.-+.+.. =.++|.++++-
T Consensus 408 ~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp-----~GekL~~t~dPLe~A~kfl~p 482 (517)
T PF12569_consen 408 SAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP-----LGEKLLKTEDPLEEAMKFLKP 482 (517)
T ss_pred ChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc-----cHHHHhcCCcHHHHHHHHHHH
Confidence 000000111000 111111111111100 000 1222 222233333 46889999999
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 046039 416 IIELDKNESCGYVLMSNLYAASYQFEEAMEERLL 449 (502)
Q Consensus 416 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 449 (502)
+.+..|++..+|..-..+|.|.|++--|+..+.+
T Consensus 483 L~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 483 LLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 9999999999999999999999999999887654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-10 Score=94.54 Aligned_cols=164 Identities=15% Similarity=0.079 Sum_probs=125.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
+...|.-.|...|+...|..-+++..+.+. .+..++..+...|.+.|..+.|.+-|+...+. -+-+..+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHH
Confidence 445566677788888888888888877542 25567777888888888888888888887752 234567777788888
Q ss_pred HhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 046039 369 GRAGLLEEAEKLIRSMPSDPD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAM 444 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 444 (502)
|..|++++|...|++....|. ..+|..++.+..+.|+++.|.+.|++.++.+|+++.....++..+...|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 888888888888888776643 4478888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhhcCC
Q 046039 445 EERLLMKEVKI 455 (502)
Q Consensus 445 ~~~~~~~~~~~ 455 (502)
.+++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 88887766554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-10 Score=114.20 Aligned_cols=228 Identities=11% Similarity=-0.029 Sum_probs=173.9
Q ss_pred CCHHHHHHHHHHHh-----ccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---------cCChHHHHHHHhcCCC
Q 046039 219 PSEFTMVSLLNACA-----KLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCK---------CGCPERALQVFNTVPK 284 (502)
Q Consensus 219 ~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~ 284 (502)
.+...|...+.+.. ..+++++|...+++..+.. +.+...+..+..+|.. .+++++|...++++.+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34455555555431 2245789999999999875 3345566666665542 2447899999998876
Q ss_pred CC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhH
Q 046039 285 KG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-IKH 360 (502)
Q Consensus 285 ~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 360 (502)
.+ ..++..+...+...|++++|...|++..+.++ .+...+..+..++...|++++|...+++..+. .|+ ...
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~ 408 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAA 408 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhh
Confidence 54 45788888899999999999999999998752 24667888888999999999999999999864 343 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPSD--P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS 437 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 437 (502)
+..++..+...|++++|...++++... | ++..+..++.++...|++++|...++++....|.+......++..|...
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 334455566789999999999887542 4 4556778889999999999999999999888898888889998888888
Q ss_pred CCchHHHHHHHHhhhc
Q 046039 438 YQFEEAMEERLLMKEV 453 (502)
Q Consensus 438 g~~~~A~~~~~~~~~~ 453 (502)
| ++|...++.+.+.
T Consensus 489 g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 489 S--ERALPTIREFLES 502 (553)
T ss_pred H--HHHHHHHHHHHHH
Confidence 8 5888888887654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-08 Score=92.18 Aligned_cols=46 Identities=13% Similarity=0.023 Sum_probs=20.7
Q ss_pred CCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHh
Q 046039 33 PAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDM 78 (502)
Q Consensus 33 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 78 (502)
..+-++-+.+++++..+-++..-+-.|..++..+++++|.+.+...
T Consensus 150 ~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~v 195 (835)
T KOG2047|consen 150 SHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATV 195 (835)
T ss_pred hCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 3344444444444444433333444444444455555444444444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-09 Score=99.75 Aligned_cols=280 Identities=11% Similarity=0.004 Sum_probs=202.7
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046039 154 DVVAWNSMIIGLAKCGEIDESRRLFDKMVSR---NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNA 230 (502)
Q Consensus 154 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 230 (502)
++.....-..-+...+++.+..++++.+.+. +...+-.-|.++...|+..+-..+=.++.+.- |..+.+|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 3334444455566677777777777777553 33445555667777888777777777777763 6667777777777
Q ss_pred HhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC--C-cchHHHHHHHHHhcCChHHHH
Q 046039 231 CAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK--G-LSCWNSMVFGLAMNGYENEAI 307 (502)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a~ 307 (502)
|...|+..+|.++|.+....+.. =...|-.+...|+-.|+.+.|...+....+. + -..+.-+.--|.+.++..-|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 77778888888888877765422 2345666777788888888888777665442 1 113334455677788888999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc-----CCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 308 KLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETY-----KIKPSIKHYSCMVDALGRAGLLEEAEKLIR 382 (502)
Q Consensus 308 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 382 (502)
+.|.+..... +.|+..++.+.-.....+.+.+|..+|+.....- .......+++.|+.+|.+.+.+++|+..++
T Consensus 401 ~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 9988887742 3366667766666667789999999998876210 011134568889999999999999999999
Q ss_pred hCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046039 383 SMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA 436 (502)
Q Consensus 383 ~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 436 (502)
+... ..+..++.+++-.|...|+++.|++.|.+++.+.|++..+-..|..+...
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 8764 35888999999999999999999999999999999998887777765443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.2e-10 Score=99.28 Aligned_cols=227 Identities=12% Similarity=-0.016 Sum_probs=151.4
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH
Q 046039 200 VKFKEALELFREMQEQN-IKPS--EFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERAL 276 (502)
Q Consensus 200 ~~~~~a~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 276 (502)
+..+.++..+.+++... ..|+ ...|..+...+...|+.+.|...|++..+.. +.+...++.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566777777776532 1121 3446666777788888888888888888765 446778888888888888888888
Q ss_pred HHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC
Q 046039 277 QVFNTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYK 353 (502)
Q Consensus 277 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 353 (502)
..|++..+.+ ..+|..++.++...|++++|++.|++..+.+ |+..........+...++.++|...++.... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 8888776543 3477778888888999999999999988754 3332222222234456789999999977654 3
Q ss_pred CCCChhHHHHHHHHHHhcCCHHH--HHHHHHhCCCC-----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCc
Q 046039 354 IKPSIKHYSCMVDALGRAGLLEE--AEKLIRSMPSD-----P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDK-NES 424 (502)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~ 424 (502)
..|+... ..+.. ...|+... +...+.+.... | ....|..++..+...|++++|+..|+++++.+| +.+
T Consensus 195 ~~~~~~~-~~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 3333322 22332 33455433 33333322221 2 345789999999999999999999999999997 555
Q ss_pred chHHHHHHHH
Q 046039 425 CGYVLMSNLY 434 (502)
Q Consensus 425 ~~~~~l~~~~ 434 (502)
.....++...
T Consensus 272 e~~~~~~e~~ 281 (296)
T PRK11189 272 EHRYALLELA 281 (296)
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-10 Score=98.77 Aligned_cols=199 Identities=16% Similarity=0.144 Sum_probs=116.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDM 265 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (502)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4456667777777777777777777776653 4445566666667777777777777777766654 2234444455555
Q ss_pred HHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcCCCHHHHHHH
Q 046039 266 YCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNL-KPDYISFIAVLTACNHSGKVNQAKDY 344 (502)
Q Consensus 266 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~ 344 (502)
+...|++++|...++. ...... ......+..+..++...|++++|...
T Consensus 109 ~~~~g~~~~A~~~~~~-------------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQ-------------------------------AIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHcccHHHHHHHHHH-------------------------------HHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555555554 433211 11223444455556666666666666
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046039 345 FTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 419 (502)
+++.... .+.+...+..+...+...|++++|...+++... ..+...+..++..+...|+.++|..+.+.+...
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666542 222344555566666666666666666665432 123445555566666667777776666665544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-10 Score=103.73 Aligned_cols=216 Identities=13% Similarity=0.038 Sum_probs=156.2
Q ss_pred cCchHHHHHHHHHHHHcC-CCC--chhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHH
Q 046039 234 LGAIRQGEWIHNFLVTNC-FEL--NTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAI 307 (502)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~ 307 (502)
.+..+.+...+.+++... ..| ....+..+...|...|++++|...|++..+. ++..|+.+...+...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346677777777777543 122 2456778888999999999999999987764 4558999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 046039 308 KLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD 387 (502)
Q Consensus 308 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (502)
..|++..+.... +..++..+..++...|++++|.+.++...+. .|+..........+...++.++|...|.+....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 999999985422 4567788888889999999999999999864 343322222223345678899999999765432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 388 PDAIIWGSLLSACRKHGNIEMAKQAAKQII-------ELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
.+...|. ........|+...+ +.++.+. ++.|+.+..|..++.++...|++++|+..|++..+.++
T Consensus 195 ~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1222232 12333345555443 2444443 45667778999999999999999999999999987665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-08 Score=92.48 Aligned_cols=101 Identities=15% Similarity=0.104 Sum_probs=80.8
Q ss_pred CCChhHH--HHHHHHHHhcCCHHHHHHHHHhCCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 046039 355 KPSIKHY--SCMVDALGRAGLLEEAEKLIRSMPSD-PDA-IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 355 ~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 430 (502)
+|....| ..++..|-+.|+++.|..+++..... |+. ..|..-...+...|+.++|...++++.+++-.|..+-..-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 4554443 45677788999999999999988765 543 3566666788889999999999999999998878777788
Q ss_pred HHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 431 SNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
+.-..++++.++|.++.....+.|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 8888899999999998888877664
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.7e-08 Score=92.46 Aligned_cols=420 Identities=12% Similarity=0.064 Sum_probs=235.5
Q ss_pred CChHHHHHHHHhhhCCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHH
Q 046039 18 KDPIAASRILAFCTSPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSL 94 (502)
Q Consensus 18 p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 94 (502)
|......++.+.-+...|+-++|......-.. .+.+.|+.+.-.+...+++++|++.|...... -+-|...+.-+
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDl 115 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDL 115 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 34334444444443567999999999888765 56678999998888899999999999999863 23344566666
Q ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC----CCCeeeHHHHH------HH
Q 046039 95 FKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT----EFDVVAWNSMI------IG 164 (502)
Q Consensus 95 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~l~------~~ 164 (502)
.-.-++.|+++..........+.. +.....|.....++.-.|+...|..++++..+ .|+...+.... ..
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i 194 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQI 194 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 666678899999888888888763 33556677888888889999999988877654 35555544322 34
Q ss_pred HHhcCCHHHHHHHHHccCCC--Chh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHh-ccCchHH
Q 046039 165 LAKCGEIDESRRLFDKMVSR--NTV-SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTM-VSLLNACA-KLGAIRQ 239 (502)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~-~~~~~~~ 239 (502)
..+.|..++|.+.+...... |-. .-..-...+.+.++.++|..++..++..+ ||..-| ..+..++. -.+..+.
T Consensus 195 ~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~ 272 (700)
T KOG1156|consen 195 LIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEA 272 (700)
T ss_pred HHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHH
Confidence 56688888888887665332 222 23345677888999999999999999874 554444 44444553 2333333
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-hHHHHHHHhcCCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHHH--
Q 046039 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGC-PERALQVFNTVPKKGL-SCWNSMVFGLAMNGYENEAIKLFSGLQS-- 315 (502)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 315 (502)
...+|....+.-. ....-..+--......+ .+....++....+.++ ..+..+...|-.....+-..++...+..
T Consensus 273 lk~ly~~ls~~y~--r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L 350 (700)
T KOG1156|consen 273 LKALYAILSEKYP--RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSL 350 (700)
T ss_pred HHHHHHHHhhcCc--ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhc
Confidence 3355555444311 10000000000111111 2222333333333332 2344444444332222211111111111
Q ss_pred --CC----------CCCCHH--HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 046039 316 --SN----------LKPDYI--SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGLLEEAEKL 380 (502)
Q Consensus 316 --~~----------~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 380 (502)
.| -+|... ++..++..+-..|+++.|..+++.... -.|+ +..|..-.+.+.-.|++++|..+
T Consensus 351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 00 023332 233445556666677777777666663 2333 34444445666666777777777
Q ss_pred HHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C------cchHHHHHHHHHhcCCchHHHHHH
Q 046039 381 IRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN---E------SCGYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 381 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~------~~~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
+++..+- +|..+=.--+.-..+.++.++|.++.......+-+ + ..+..-=+.+|.++|++..|++=|
T Consensus 428 l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 428 LDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 6666532 33333333444555666666666666655442211 0 011122244566666666665533
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9e-10 Score=105.41 Aligned_cols=242 Identities=13% Similarity=0.141 Sum_probs=128.6
Q ss_pred HHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCC
Q 046039 75 FIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFD 154 (502)
Q Consensus 75 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 154 (502)
+-.+... |+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++......++.+.+. .|.
T Consensus 13 la~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------ep~ 82 (1088)
T KOG4318|consen 13 LALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------EPL 82 (1088)
T ss_pred HHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------CCc
Confidence 3334444 66666666666666666666666665 6665555555555666666666655555555443 455
Q ss_pred eeeHHHHHHHHHhcCCHHH---HHH--------------------HHHcc-CCC-ChhhHHHHHHHHHhCCChHHHHHHH
Q 046039 155 VVAWNSMIIGLAKCGEIDE---SRR--------------------LFDKM-VSR-NTVSWNSMISGYVRNVKFKEALELF 209 (502)
Q Consensus 155 ~~~~~~l~~~~~~~~~~~~---a~~--------------------~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 209 (502)
..+|..|..+|.+.||+.. +.+ ++..+ ..| ....-...+....-.|-|+.+++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666665543 111 11111 000 0001112223333445555555555
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHhccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc
Q 046039 210 REMQEQN-IKPSEFTMVSLLNACAKLG-AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL 287 (502)
Q Consensus 210 ~~m~~~~-~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 287 (502)
..+.-.. ..|... .++-+.... .+++-..+.....+ .+++.++..++.+-...|+.+.|..++..|.+.+.
T Consensus 163 ~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred hhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 4442211 011111 233332222 22222222222222 46777777777777778888888888888777664
Q ss_pred c-----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 046039 288 S-----CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK 337 (502)
Q Consensus 288 ~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 337 (502)
. .|..++. .++...+..+++.|.+.|+.|+..|+...+..+...|.
T Consensus 236 pir~HyFwpLl~g----~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG----INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred Ccccccchhhhhc----CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 3 2333322 66777777777777888888888877777766666444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-08 Score=85.31 Aligned_cols=413 Identities=11% Similarity=0.011 Sum_probs=238.6
Q ss_pred CCCCChhHHHHHhccCCC---CCc-chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhH
Q 046039 32 SPAGDINYAYLVFTQIKK---PNL-FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDG 107 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~---~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 107 (502)
....++..|+.+++.-.. ... .+--.+...+.+-|++++|...|..+.++ -.|+...+..+.-+..-.|.+.+|
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHHHH
Confidence 455778888888776543 111 12223445566778999999998888775 345556666666666667777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCCh-
Q 046039 108 AQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNT- 186 (502)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 186 (502)
..+.... +.++-....++..-.+.|+-++-..+-+.+.. ....-.+|.....-.-.+.+|++++.++...++
T Consensus 111 ~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD--~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 111 KSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD--TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 7665443 22333334455555566776666665555542 112233444444455678889999988866443
Q ss_pred -hhHHH-HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CchHHHH------------HHHHHHHHc
Q 046039 187 -VSWNS-MISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKL--GAIRQGE------------WIHNFLVTN 250 (502)
Q Consensus 187 -~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~------------~~~~~~~~~ 250 (502)
...|. +.-+|.+..-++-+.++++--+.. ++.+....+..+....+. |+..+.+ ...+.+.++
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 33443 445677888888888888877665 233333333333222221 2211110 111122221
Q ss_pred CC------------CC-----chhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcC-------ChHHH
Q 046039 251 CF------------EL-----NTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNG-------YENEA 306 (502)
Q Consensus 251 ~~------------~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a 306 (502)
+. -| -+..--.|+-.|.+.+++.+|..+.+.+....+.-|-.-.-.++..| ...-|
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 10 01 12233345556788999999999988887655543333333333333 33445
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 307 IKLFSGLQSSNLKPDY-ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 307 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
.+.|+-.-+++...|. ..-.++.+++.-..++++.+.++..+..- -...|...+ .+..+++..|.+.+|+++|-.+.
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhc
Confidence 5555444334333222 11223444444455788888888777652 233333333 47888888999999999988876
Q ss_pred CC--CCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccC
Q 046039 386 SD--PDAIIWG-SLLSACRKHGNIEMAKQAAKQIIELDKN-ESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKE 458 (502)
Q Consensus 386 ~~--~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 458 (502)
.. .+..+|. .|..+|.+.++++.|..++-++ -.|. .......+++.|.+.+.+--|.+.|+.+...++.|+
T Consensus 421 ~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 421 GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 43 3555554 4667888888888887765433 2233 334556667778888888888888888877665554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-09 Score=100.54 Aligned_cols=96 Identities=20% Similarity=0.272 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhc-----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETY-----KIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS--------DP 388 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~ 388 (502)
.++..+...|...|++++|.++++.+.... +..+ ....++.+...|.+.+++.+|.++|.+... .|
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 456666666777777777777776665431 1111 244566777778888888878777766432 25
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 389 DA-IIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 389 ~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
+. .+|..|+..|.+.|+++.|.++.+.+..
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 44 4889999999999999999999998874
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-08 Score=85.25 Aligned_cols=304 Identities=12% Similarity=0.099 Sum_probs=150.9
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHH---HHHHhcCCHHHHHHHHHccCCCChhhHHH---HHHHH
Q 046039 123 QFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMI---IGLAKCGEIDESRRLFDKMVSRNTVSWNS---MISGY 196 (502)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---l~~~~ 196 (502)
+.-...+...+...|++..|+.-|.... +.|+..|.++. ..|...|+...|+.-+.+.++..+..+.+ -...+
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAv-e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAV-EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH-cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 3334445555555566666666555554 44444444332 34555555555555555553322222222 22455
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCC--H------------HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 046039 197 VRNVKFKEALELFREMQEQNIKPS--E------------FTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAI 262 (502)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~~~--~------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 262 (502)
.++|.+++|..=|+..++.....+ . ......+..+...|+...|+.....+++.. +.+...+..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 666666666666666665431100 0 011223344555677777777777777654 4566666666
Q ss_pred HHHHHhcCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHH
Q 046039 263 IDMYCKCGCPERALQVFNTVP---KKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVN 339 (502)
Q Consensus 263 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 339 (502)
..+|...|++..|+.=++... ..+...+..+-..+...|+.+.++...++-.+. .||.......-. ...
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK------klk 267 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK------KLK 267 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH------HHH
Confidence 777777777777765554433 344445555566666667777666666666553 344432111100 011
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-----HHHHHHHHHHHHhcCCHHHHHHHH
Q 046039 340 QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD-----AIIWGSLLSACRKHGNIEMAKQAA 413 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~~l~~~~~~~~~~~~A~~~~ 413 (502)
+....++.| ....+.+++-++.+..+.... +|. ...+..+-.++...+++.+|++..
T Consensus 268 Kv~K~les~-----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 268 KVVKSLESA-----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred HHHHHHHHH-----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 111111111 111233444444444433322 232 112233334444555556666666
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 414 KQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 414 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
.++++.+|+++.++...+.+|.-..++|.|+.-++...+.
T Consensus 331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 6666666665555555555555555556555555555443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-11 Score=76.53 Aligned_cols=50 Identities=44% Similarity=0.794 Sum_probs=45.7
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046039 184 RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK 233 (502)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 233 (502)
||+.+||.++.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-08 Score=96.53 Aligned_cols=287 Identities=12% Similarity=0.028 Sum_probs=155.5
Q ss_pred HHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC--
Q 046039 60 RGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCG-- 137 (502)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 137 (502)
..+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.++ .+..-|..+..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 4456778888888888776542 333344556667777888888888888888888763 34555555555542222
Q ss_pred ---ChhHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 046039 138 ---FLSEARLMFDEVDT-EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQ 213 (502)
Q Consensus 138 ---~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 213 (502)
+.+...++|+++.. -|.......+.-.+.....+ -..+..++..+.
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F------------------------------~~~~~~yl~~~l 138 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEF------------------------------KERLDEYLRPQL 138 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHH------------------------------HHHHHHHHHHHH
Confidence 34455555555432 12111111111111110111 123444445555
Q ss_pred HCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc----C----------CCCch--hHHHHHHHHHHhcCChHHHHH
Q 046039 214 EQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTN----C----------FELNT--IVVTAIIDMYCKCGCPERALQ 277 (502)
Q Consensus 214 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~ 277 (502)
..|+|+ +|..+-..|.......-...++...... + -+|+. .++..+...|-..|++++|+.
T Consensus 139 ~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 139 RKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred hcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 556443 3333333344333333333444333321 0 11222 233445666667777777777
Q ss_pred HHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCC
Q 046039 278 VFNTVPKKGLS---CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKI 354 (502)
Q Consensus 278 ~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 354 (502)
++++..+.++. .|..-+..+-..|++.+|.+.++..+..+.. |...-+-.+..+.+.|++++|.+++....+. +.
T Consensus 216 ~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~ 293 (517)
T PF12569_consen 216 YIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DV 293 (517)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CC
Confidence 77766655433 5566666677777777777777777765433 5555555566666777777777777776554 32
Q ss_pred CCChhH--------HHHHHHHHHhcCCHHHHHHHHHhC
Q 046039 355 KPSIKH--------YSCMVDALGRAGLLEEAEKLIRSM 384 (502)
Q Consensus 355 ~~~~~~--------~~~l~~~~~~~g~~~~A~~~~~~~ 384 (502)
.|.... ....+.+|.+.|++..|+..|..+
T Consensus 294 ~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 294 DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 332211 133456677777777777655444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.8e-10 Score=101.19 Aligned_cols=252 Identities=11% Similarity=0.054 Sum_probs=174.6
Q ss_pred HhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHH
Q 046039 231 CAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL---SCWNSMVFGLAMNGYENEAI 307 (502)
Q Consensus 231 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~ 307 (502)
+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+.++ .+...|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 346677777777777777665 44666777777777777777777777776665443 35566666677777777777
Q ss_pred HHHHHHHHCCCC--------CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 046039 308 KLFSGLQSSNLK--------PDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEK 379 (502)
Q Consensus 308 ~~~~~~~~~~~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 379 (502)
+.++.-+...++ ++...-.. ........+....++|-++....+..+|+.++..|.-.|--.|.+++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 777766543211 00000000 11122223445556666665554666888899999999999999999999
Q ss_pred HHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCcc
Q 046039 380 LIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEK 457 (502)
Q Consensus 380 ~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 457 (502)
-|+.+.. +| |...|+.|+..+....+.++|+..|.+++++.|..+.+.+.|+..|...|.+++|.+.|-.+.......
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 9998875 46 677999999999999999999999999999999999999999999999999999999876665322110
Q ss_pred CCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHhcC
Q 046039 458 EPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQEMG 501 (502)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 501 (502)
.- ..+..++ +.+|-.+|....-.|++.|
T Consensus 532 ~~---------------~~~~~~~-se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 532 RN---------------HNKAPMA-SENIWQTLRLALSAMNRSD 559 (579)
T ss_pred cc---------------cccCCcc-hHHHHHHHHHHHHHcCCch
Confidence 00 0001111 4577777777666666554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-08 Score=85.54 Aligned_cols=381 Identities=13% Similarity=0.086 Sum_probs=238.0
Q ss_pred HHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 046039 59 IRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGF 138 (502)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 138 (502)
+.-+...+++..|+.+++--... +-.-...+-.-+..++.+.|++++|+..+..+.... .++...+..|.-++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 45566778999999998776543 222222233334456678999999999999888754 6677777778888888899
Q ss_pred hhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 046039 139 LSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIK 218 (502)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 218 (502)
+.+|..+..+.. .++..-..|.+...+.++-++-..+-+.+... ...--+|.+.....-.+.+|+++++..+.. .
T Consensus 107 Y~eA~~~~~ka~--k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n 181 (557)
T KOG3785|consen 107 YIEAKSIAEKAP--KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--N 181 (557)
T ss_pred HHHHHHHHhhCC--CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence 999999887754 23333445566677778777766666555432 233344555555556789999999998875 3
Q ss_pred CCHHHHHHHH-HHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CChHHH--HHHHhcCC----------
Q 046039 219 PSEFTMVSLL-NACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKC--GCPERA--LQVFNTVP---------- 283 (502)
Q Consensus 219 ~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A--~~~~~~~~---------- 283 (502)
|+-...+.-+ -+|.+..-++.+.+++.-.++.- +.++...|.......+. |+..++ ..+-+.+.
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 4444444433 34566666777777777766652 33344444333322221 221111 11111111
Q ss_pred CCC---------------------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-----cCCC
Q 046039 284 KKG---------------------LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACN-----HSGK 337 (502)
Q Consensus 284 ~~~---------------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~~~ 337 (502)
+.+ +.+...|+--|.+++++.+|..+.+++.- ..|-......+..+-. ....
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHH
Confidence 111 22444456667889999999988777643 2344444444433321 1123
Q ss_pred HHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 338 VNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAK 414 (502)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 414 (502)
..-|.+.|+..-.+ +..-| ..--.++...+.-..++++.+-.++.+..- .|...-..+..+++..|++.+|.+.|-
T Consensus 339 lKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 45667777665443 33322 223345566666677888888888877652 233333457889999999999999998
Q ss_pred HHHhcC-CCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 415 QIIELD-KNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 415 ~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
+....+ .+.......|+.||.+.|+.+-|+.++-++
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 887655 445666778899999999999998876554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-11 Score=76.57 Aligned_cols=49 Identities=29% Similarity=0.559 Sum_probs=31.9
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHH
Q 046039 50 PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYA 99 (502)
Q Consensus 50 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 99 (502)
||+.+||.+|.+|++.|++++|.++|++|.+. |++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHc
Confidence 56666666666666666666666666666666 66666666666666654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.3e-09 Score=85.32 Aligned_cols=194 Identities=11% Similarity=-0.032 Sum_probs=156.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046039 258 VVTAIIDMYCKCGCPERALQVFNTVPKKGLS---CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH 334 (502)
Q Consensus 258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 334 (502)
+...|.-.|...|++..|..-+++..+.|+. +|..+...|.+.|+.+.|.+-|++....... +....+....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3445677788889999999998888877655 7788888899999999999999998886432 44666777777788
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHH
Q 046039 335 SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQA 412 (502)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~ 412 (502)
.|.+++|.+.|++......+.....+|..+..+..+.|+++.|...|++.... | .+.....+.....+.|++..|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 88999999999998887555556778888888888999999999999887652 4 455777888888999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 413 AKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 413 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
+++.....+.+...+...+.+-.+.|+.+.|-++-..+.+
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999887777788888888888889999988887666654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.2e-07 Score=86.47 Aligned_cols=336 Identities=13% Similarity=0.067 Sum_probs=210.4
Q ss_pred CCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCC-----hhhHH
Q 046039 118 GLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRN-----TVSWN 190 (502)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~ 190 (502)
.+..|..+|..+.-++...|+++.+-+.|++... -.....|+.+...+...|.-..|..+++....+. +..+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3556888888888899999999999999988763 2455678888888999999899999988874432 23333
Q ss_pred HHHHHHH-hCCChHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHhccC-----------chHHHHHHHHHHHHcCCCC
Q 046039 191 SMISGYV-RNVKFKEALELFREMQEQ--NI--KPSEFTMVSLLNACAKLG-----------AIRQGEWIHNFLVTNCFEL 254 (502)
Q Consensus 191 ~l~~~~~-~~~~~~~a~~~~~~m~~~--~~--~~~~~~~~~ll~~~~~~~-----------~~~~a~~~~~~~~~~~~~~ 254 (502)
.....|. +.+..++++.+-.+.... +. ...+..|..+.-+|...- ...++.+.+++..+.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-T 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 3333343 456778888887777662 11 223345555555553221 23466777888877663 3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC---------
Q 046039 255 NTIVVTAIIDMYCKCGCPERALQVFNTVPK----KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS-NLKP--------- 320 (502)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p--------- 320 (502)
|+.+...+.--|+..++.+.|.+..++..+ .+...|..++-.+...+++.+|+.+.+..... |...
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 444444455567788889888888776554 35668999999999999999999998877653 2100
Q ss_pred -----C----HHHHHHHHHHHhc------C-----------------CCHHHHHHHHHHhh-------hh---------c
Q 046039 321 -----D----YISFIAVLTACNH------S-----------------GKVNQAKDYFTLMT-------ET---------Y 352 (502)
Q Consensus 321 -----~----~~~~~~l~~~~~~------~-----------------~~~~~a~~~~~~~~-------~~---------~ 352 (502)
+ ..|...++..... . .+..++......+. +. .
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 0 0111111111110 0 01111111111100 00 0
Q ss_pred CCCCC--------hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 353 KIKPS--------IKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 353 ~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
.+.|. ...|......+.+.+..++|..-+.+...- -.+..|...+..+...|+.++|.+.|..++.++|+
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 01111 112334445566777777777666555432 35567777777788888888999999988889999
Q ss_pred CcchHHHHHHHHHhcCCchHHHH--HHHHhhhcC
Q 046039 423 ESCGYVLMSNLYAASYQFEEAME--ERLLMKEVK 454 (502)
Q Consensus 423 ~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~ 454 (502)
++.....++.++.+.|+..-|.. ++..+.+.+
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 98888889988888887777766 677766443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-07 Score=84.17 Aligned_cols=382 Identities=14% Similarity=0.056 Sum_probs=229.9
Q ss_pred HHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 046039 59 IRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGF 138 (502)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 138 (502)
+.-+..++++++|.....++... .+-+...+..=+-++++.++++.|+.+.+.-.. ...+...+..-..+..+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHccc
Confidence 44566789999999999999864 344555677777788899999999855443211 11111221233455567899
Q ss_pred hhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 046039 139 LSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIK 218 (502)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 218 (502)
.++|+..++-.. +.+..+...-...+.+.+++++|..+|+.+.+.+...+...+.+-+..-- .+... +.+......
T Consensus 95 ~Dealk~~~~~~-~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--a~l~~-~~~q~v~~v 170 (652)
T KOG2376|consen 95 LDEALKTLKGLD-RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--AALQV-QLLQSVPEV 170 (652)
T ss_pred HHHHHHHHhccc-ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--HhhhH-HHHHhccCC
Confidence 999999999444 45555666667889999999999999999988777766655543221110 11111 122222223
Q ss_pred CCHHHHHHHHH---HHhccCchHHHHHHHHHHHHcCC-------CCch-------hHHHHHHHHHHhcCChHHHHHHHhc
Q 046039 219 PSEFTMVSLLN---ACAKLGAIRQGEWIHNFLVTNCF-------ELNT-------IVVTAIIDMYCKCGCPERALQVFNT 281 (502)
Q Consensus 219 ~~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~-------~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 281 (502)
| ..+|..+.+ .+...|++.+|+++++...+.+. ..+. .+-..|.-.+...|+.++|..++..
T Consensus 171 ~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 171 P-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3 334544443 45678999999999998843221 0001 1123345567789999999998887
Q ss_pred CCCCCcc-------hHHHHHHHHH---------------------------------------------hcCChHHHHHH
Q 046039 282 VPKKGLS-------CWNSMVFGLA---------------------------------------------MNGYENEAIKL 309 (502)
Q Consensus 282 ~~~~~~~-------~~~~l~~~~~---------------------------------------------~~g~~~~a~~~ 309 (502)
+.+.+.. +-|.++..-. -.+.-+.+.++
T Consensus 250 ~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 250 IIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 6653211 1111111000 00111111111
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH----
Q 046039 310 FSGLQSSNLKPDYISFIAVLTACNH--SGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGLLEEAEKLIR---- 382 (502)
Q Consensus 310 ~~~~~~~~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~---- 382 (502)
-... .+..|. ..+..++..+.+ ...+..+.+++..... +.+.+ ..+.-..+......|+++.|.+++.
T Consensus 330 ~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 330 SASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 1111 011222 334444444332 2246777777777765 33333 3444556677889999999999988
Q ss_pred ----hCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCC---CcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 383 ----SMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIE----LDKN---ESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 383 ----~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
.+.+ .-.+.+...+...+.+.++.+.|..++..++. ..+. ....+..++..-.+.|+-++|..+++++
T Consensus 405 ~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel 484 (652)
T KOG2376|consen 405 SWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEEL 484 (652)
T ss_pred hhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence 3332 13445666677778888888889999988876 1122 2234555566667789999999999999
Q ss_pred hhcC
Q 046039 451 KEVK 454 (502)
Q Consensus 451 ~~~~ 454 (502)
.+.+
T Consensus 485 ~k~n 488 (652)
T KOG2376|consen 485 VKFN 488 (652)
T ss_pred HHhC
Confidence 8744
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-08 Score=93.41 Aligned_cols=267 Identities=16% Similarity=0.097 Sum_probs=144.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
+.+....++|.+|+.+++.+..... -..-|..+...|+..|+++.|+++|-+. ..++-.|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3444556667777777776665432 2234556666777777777777766432 2234456667777777
Q ss_pred HHHHHHHhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 046039 273 ERALQVFNTVPKKG--LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTE 350 (502)
Q Consensus 273 ~~A~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (502)
+.|.++-.+...+. +..|-+-..-+-.+|++.+|.++|-.... |+. .+..|-+.|..+..+++.++...
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 77777766665543 33455555556667777777666544322 222 34556666666666666554321
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 046039 351 TYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 430 (502)
. .-..+...+..-|...|++..|..-|-+.. -|..-++.|..++-|++|-++.+. -...|..-....
T Consensus 879 d----~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayriakt---egg~n~~k~v~f 945 (1636)
T KOG3616|consen 879 D----HLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAKT---EGGANAEKHVAF 945 (1636)
T ss_pred h----hhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHhc---cccccHHHHHHH
Confidence 1 113345556666777777777777776554 466666667666666666554332 233333333333
Q ss_pred HHHHHhcCCchHHHHHHHH--hhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHH
Q 046039 431 SNLYAASYQFEEAMEERLL--MKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQ 498 (502)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 498 (502)
.++-.-. -+.|.+++.+ |.+.+++........++...+.++ ......+++...++...+..+
T Consensus 946 lwaksig--gdaavkllnk~gll~~~id~a~d~~afd~afdlari----~~k~k~~~vhlk~a~~ledeg 1009 (1636)
T KOG3616|consen 946 LWAKSIG--GDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARI----AAKDKMGEVHLKLAMFLEDEG 1009 (1636)
T ss_pred HHHHhhC--cHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHH----hhhccCccchhHHhhhhhhcc
Confidence 3333333 3556666554 234444322222222222223332 223344566666665554443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-09 Score=95.48 Aligned_cols=78 Identities=14% Similarity=0.079 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc-hHHHHHHHHh
Q 046039 374 LEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQF-EEAMEERLLM 450 (502)
Q Consensus 374 ~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 450 (502)
+.+|..+|+++..+ +++.+.+.++.++...|++++|.++++++++.+|+++.+...++.+....|+. +.+.+++.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 44444444444332 33444444444444555555555555555444455544444444444444444 3333444444
Q ss_pred h
Q 046039 451 K 451 (502)
Q Consensus 451 ~ 451 (502)
.
T Consensus 263 ~ 263 (290)
T PF04733_consen 263 K 263 (290)
T ss_dssp H
T ss_pred H
Confidence 3
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.6e-07 Score=84.17 Aligned_cols=257 Identities=9% Similarity=-0.033 Sum_probs=132.6
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 046039 195 GYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK----LGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCG 270 (502)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 270 (502)
.+...|++++|.+.+++..+.. |.+...+.. ...+.. .+....+.+.+... ....+........+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcC
Confidence 4455666666666666666542 333333321 112222 23333333333321 1111122233344455666667
Q ss_pred ChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHhcCCCHHHHHHH
Q 046039 271 CPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLK-PDY--ISFIAVLTACNHSGKVNQAKDY 344 (502)
Q Consensus 271 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~--~~~~~l~~~~~~~~~~~~a~~~ 344 (502)
++++|...+++..+. +...+..+...+...|++++|..++++....... |+. ..+..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777766665543 2335566666677777777777777766654221 222 2344566667777777777777
Q ss_pred HHHhhhhcCCCCChhHH-H--HHHHHHHhcCCHHHHHHH---HHhCCCC-C---CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 345 FTLMTETYKIKPSIKHY-S--CMVDALGRAGLLEEAEKL---IRSMPSD-P---DAIIWGSLLSACRKHGNIEMAKQAAK 414 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~-~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 414 (502)
++.........+..... + .++..+...|....+.++ ....... + ..........++...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 77764321111111111 1 222223333432222222 1111100 1 11122346667778888888888888
Q ss_pred HHHhcC-C--------CCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 415 QIIELD-K--------NESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 415 ~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
.+.... . .........+.++...|++++|.+.+.......
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 876522 1 134455667777889999999999888876543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-06 Score=81.01 Aligned_cols=344 Identities=13% Similarity=0.113 Sum_probs=204.3
Q ss_pred hHHHHHHHH--hhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCC--------CCCcc
Q 046039 20 PIAASRILA--FCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPI--------QPQRL 89 (502)
Q Consensus 20 ~~~~~~ll~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------~p~~~ 89 (502)
+.+=..+|. .| .-.|+.+.|.+-.+.+. +...|..+.+.+.+.++.+-|.-.+-.|....|. .|+ .
T Consensus 726 ~~TRkaml~FSfy-vtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFY-VTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred HHHHHhhhceeEE-EEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 334444444 34 67788888888877764 4567888888888888887776665555432111 122 2
Q ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcC
Q 046039 90 TYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCG 169 (502)
Q Consensus 90 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~ 169 (502)
.=..+.-.....|.+++|+.+|.+-++. ..|-..|-..|.|++|.++-+.=..-.=..||......+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 2223333346778888888888877653 2344567778888888887664321112235555666666678
Q ss_pred CHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 046039 170 EIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVT 249 (502)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 249 (502)
+.+.|++.|++...+--..+..|. .++.....+.+.+ .|...|......+-..|+.+.|+.+|..+.+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 888888888876443222222221 1223333333333 3446777777777888999999998887665
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046039 250 NCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVL 329 (502)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 329 (502)
|-++++..+-.|+.++|-++-++ ..|..+...+...|-..|++.+|+..|.+... |...|
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAI 1000 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAI 1000 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHH
Confidence 33466666778888888887765 23455667788888889999999988877653 33334
Q ss_pred HHHhcCC---------------CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---------C
Q 046039 330 TACNHSG---------------KVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSM---------P 385 (502)
Q Consensus 330 ~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~ 385 (502)
+.|-..+ +.-.|-++|++.- .. +..-+..|-+.|.+.+|+++--+- .
T Consensus 1001 RlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g----~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 1001 RLCKENDMKDRLANLALMSGGSDLVSAARYYEELG----GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred HHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc----hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence 4333222 2333344444331 11 122334566677766666642111 1
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046039 386 ----SDPDAIIWGSLLSACRKHGNIEMAKQAAKQII 417 (502)
Q Consensus 386 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 417 (502)
...|+...+.-...+....++++|..++-.+.
T Consensus 1072 ~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1072 KDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 11355555555666666666666665554443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-08 Score=87.90 Aligned_cols=228 Identities=18% Similarity=0.111 Sum_probs=150.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC-CchhHHHHHHHHH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE-LNTIVVTAIIDMY 266 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 266 (502)
....+.+++...|+++.++ .++.... .|.......+...+...++-+.+..-++........ .+..+.......+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3445567777777766544 3333333 555555555555554434444444444433333222 2333333334556
Q ss_pred HhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCCHHHHH
Q 046039 267 CKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH----SGKVNQAK 342 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~ 342 (502)
...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...++.++.. .+.+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHH
Confidence 6778888888888775 44556677788899999999999999999874 333 444445554432 34689999
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhc
Q 046039 343 DYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNI-EMAKQAAKQIIEL 419 (502)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~ 419 (502)
.+|+++.. .+++++.+.+.+..+....|++++|.+++.+.... | ++.++..++.+..-.|+. +.+.+.+.++...
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999876 55788889999999999999999999999887653 4 566777888888888887 7788899998889
Q ss_pred CCCCcch
Q 046039 420 DKNESCG 426 (502)
Q Consensus 420 ~p~~~~~ 426 (502)
.|+++.+
T Consensus 266 ~p~h~~~ 272 (290)
T PF04733_consen 266 NPNHPLV 272 (290)
T ss_dssp TTTSHHH
T ss_pred CCCChHH
Confidence 9987743
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-07 Score=90.11 Aligned_cols=438 Identities=12% Similarity=0.044 Sum_probs=267.0
Q ss_pred HHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCC
Q 046039 7 IHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSP 83 (502)
Q Consensus 7 i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 83 (502)
+..-+....+.|+-...-+.|+.+|....+...|.+.|++..+ .+..++......|++..+++.|..+.-..-+...
T Consensus 478 l~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~ 557 (1238)
T KOG1127|consen 478 LHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP 557 (1238)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch
Confidence 3344455556666444444444443777788999999999876 5667788899999999999999998554443311
Q ss_pred CCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCC-eeeHHHH
Q 046039 84 IQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EFD-VVAWNSM 161 (502)
Q Consensus 84 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-~~~~~~l 161 (502)
...-...|..+.-.+...++...+..-|+...+.. +.|...|..++.+|.++|++..|.++|.+... +|+ ...--..
T Consensus 558 a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~ 636 (1238)
T KOG1127|consen 558 AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKE 636 (1238)
T ss_pred HHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHH
Confidence 11111223333444667788999999999988875 44888999999999999999999999987763 232 2222222
Q ss_pred HHHHHhcCCHHHHHHHHHccCCC----------ChhhHHHHHHHHHhCCChHHHHHHHHH-------HHHCCCCCCHHHH
Q 046039 162 IIGLAKCGEIDESRRLFDKMVSR----------NTVSWNSMISGYVRNVKFKEALELFRE-------MQEQNIKPSEFTM 224 (502)
Q Consensus 162 ~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~-------m~~~~~~~~~~~~ 224 (502)
.-.-+..|.+.+|...+..+... -..++..+...+...|-..++..+++. ........+...+
T Consensus 637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~W 716 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQW 716 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 33456688888888888777331 122333333333333333333333332 2222212222222
Q ss_pred HHHHHHH-----------------------hccCch---H---HHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cC-
Q 046039 225 VSLLNAC-----------------------AKLGAI---R---QGEWIHNFLVTNCFELNTIVVTAIIDMYCK----CG- 270 (502)
Q Consensus 225 ~~ll~~~-----------------------~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g- 270 (502)
..+-.+| -..+.. + -+.+.+-.-.+ ...+...+..|+..|.+ .|
T Consensus 717 i~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 717 IVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred HHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCC
Confidence 2222221 111111 1 00011100000 11123344445444443 22
Q ss_pred ---ChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 046039 271 ---CPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDY 344 (502)
Q Consensus 271 ---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 344 (502)
+...|+.++.+..+ .+...|+.|.-. ...|++.-+...|-+-+... +-...+|..+...|....+++.|...
T Consensus 795 t~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~a 872 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPA 872 (1238)
T ss_pred cchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHH
Confidence 23467777776554 345577777665 66678888887777666653 23567788888788889999999999
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-----CC--CCCHHHHHHHHHHHHhcCCHHHHH-------
Q 046039 345 FTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSM-----PS--DPDAIIWGSLLSACRKHGNIEMAK------- 410 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~A~------- 410 (502)
|...+. -.+.+...|-.........|+.-++..+|..- .. -|+...|.+........|++++-+
T Consensus 873 f~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~ 950 (1238)
T KOG1127|consen 873 FSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKIS 950 (1238)
T ss_pred HHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhh
Confidence 998874 23344556655555556789888888888762 11 166666666655566666655444
Q ss_pred ---HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 411 ---QAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 411 ---~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
-.+++.+...|+...+|...+....+.+.+.+|.+...++.
T Consensus 951 sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 951 SASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred hhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44455556789999999999999999999999998777664
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-06 Score=81.59 Aligned_cols=56 Identities=18% Similarity=0.091 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC--C---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 363 CMVDALGRAGLLEEAEKLIRSMPSD--P---------DAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~--~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
....++...|+.+.|..+++.+... . .+........++...|++++|.+.+..++.
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666778888888877665431 1 112223344456788899999998888876
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-06 Score=82.73 Aligned_cols=288 Identities=14% Similarity=0.145 Sum_probs=161.6
Q ss_pred HHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChh--hHHHHHHHHHhCCChHHHHH
Q 046039 130 IYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTV--SWNSMISGYVRNVKFKEALE 207 (502)
Q Consensus 130 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~ 207 (502)
...+...|+++.|..-|-+.. ....-+.+......|.+|+.+++.+...++. -|..+...|...|+++.|.+
T Consensus 713 g~hl~~~~q~daainhfiea~------~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEAN------CLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhh------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHH
Confidence 344445555555555554332 1222345556677777788887777655433 36667777788888888877
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc
Q 046039 208 LFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL 287 (502)
Q Consensus 208 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 287 (502)
+|-+.- .++-.|..|.+.|+++.|.++-.+.. |.......|-+-..-.-..|++.+|.++|-.+..++.
T Consensus 787 lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~ 855 (1636)
T KOG3616|consen 787 LFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK 855 (1636)
T ss_pred HHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH
Confidence 775431 23445667777888887777765543 3344455555555566677778888877777766653
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 046039 288 SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDA 367 (502)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (502)
.|..|-+.|..+..+++..+-... .-..|-..+..-+...|+...|+..|-+... |.+-+.+
T Consensus 856 -----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnm 917 (1636)
T KOG3616|consen 856 -----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNM 917 (1636)
T ss_pred -----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHH
Confidence 356677777777777766554321 1223444555566667777777766654421 2334455
Q ss_pred HHhcCCHHHHHHHHHhCCCC----CCHHHH-------------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 368 LGRAGLLEEAEKLIRSMPSD----PDAIIW-------------------GSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~----~~~~~~-------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
|...+.+++|.++-+.-... .-...| ..-+...+..+-++-|..+.+-+.+ ..-+
T Consensus 918 yk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~ 995 (1636)
T KOG3616|consen 918 YKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMG 995 (1636)
T ss_pred hhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCc
Confidence 55556666665554332110 000011 1111222333344444444333322 2334
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+++..++..+...|++++|-+.+-+..+.+
T Consensus 996 ~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 996 EVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred cchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 556666667777888888877666655443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.8e-07 Score=94.22 Aligned_cols=324 Identities=11% Similarity=-0.017 Sum_probs=212.0
Q ss_pred HHHHhCCChhHHHHHHhhcCC---CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC----C----C----hhhHHHHHHH
Q 046039 131 YMYANCGFLSEARLMFDEVDT---EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS----R----N----TVSWNSMISG 195 (502)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~----~----~~~~~~l~~~ 195 (502)
..+...|+++.+..+++.+.. ..+..........+...|+++++...+..... . + ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344556778877777777642 12333334445556678999999888876521 1 1 1122233455
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCchHHHHHHHHHHHHcCC---CC--chhHHHHHHHHH
Q 046039 196 YVRNVKFKEALELFREMQEQNIKPSE----FTMVSLLNACAKLGAIRQGEWIHNFLVTNCF---EL--NTIVVTAIIDMY 266 (502)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 266 (502)
+...|++++|...+++....-...+. .....+...+...|+++.|...+++.....- .+ .......+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67899999999999988763212222 2345556667789999999999988775321 11 123455667788
Q ss_pred HhcCChHHHHHHHhcCCC----CC-------cchHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCC--CHHHHHHHHHH
Q 046039 267 CKCGCPERALQVFNTVPK----KG-------LSCWNSMVFGLAMNGYENEAIKLFSGLQSSN--LKP--DYISFIAVLTA 331 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~----~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p--~~~~~~~l~~~ 331 (502)
...|+++.|...+++... .+ ...+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 899999999998776442 11 1134455666777899999999988876531 112 23344456667
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHH
Q 046039 332 CNHSGKVNQAKDYFTLMTETYKIKPSIKHY-----SCMVDALGRAGLLEEAEKLIRSMPSD--PDA----IIWGSLLSAC 400 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~ 400 (502)
....|+++.|.+.++..............+ ...+..+...|+.+.|..++...... ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 778999999999988875421111111111 11224455689999999998776542 111 1245677788
Q ss_pred HhcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 401 RKHGNIEMAKQAAKQIIELD------KNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
...|++++|...++++++.. +.....+..++.++.+.|+.++|...+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 89999999999999998742 1233467788899999999999999998887654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.2e-07 Score=81.95 Aligned_cols=415 Identities=13% Similarity=0.025 Sum_probs=248.9
Q ss_pred hHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC--CCc-chHHHHHHHHhcCCChHHHHHHHHHhH
Q 046039 3 DLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK--PNL-FIWNTIIRGFSQSSTPRNAILLFIDML 79 (502)
Q Consensus 3 ~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~ 79 (502)
.+...+.+.+... +++...|..-...| ++.|++++|++=-.+-.+ |+- ..|+....++.-.|++++|+..|.+-+
T Consensus 20 ~ai~~~t~ai~l~-p~nhvlySnrsaa~-a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL 97 (539)
T KOG0548|consen 20 TAIRLFTEAIMLS-PTNHVLYSNRSAAY-ASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGL 97 (539)
T ss_pred HHHHHHHHHHccC-CCccchhcchHHHH-HHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHh
Confidence 4556666665543 34666677777777 999999999887766655 433 379999999999999999999999888
Q ss_pred hcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHH-----HHHHhCCChhHHHHHHhhcCCCCC
Q 046039 80 VTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTII-----YMYANCGFLSEARLMFDEVDTEFD 154 (502)
Q Consensus 80 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~~~~~~~ 154 (502)
+. .+.|...+..+..++. .+.+. +.. .-++..+..+. +.+...-.+..-++.+.+.+. +
T Consensus 98 ~~--d~~n~~L~~gl~~a~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~--~ 161 (539)
T KOG0548|consen 98 EK--DPSNKQLKTGLAQAYL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT--S 161 (539)
T ss_pred hc--CCchHHHHHhHHHhhh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH--h
Confidence 64 2333445555555541 11111 000 00111111111 111111111111111111111 0
Q ss_pred eee---HHHHHHHHHhcCCHHH-HH---HHH---------HccCC--C-------------ChhhHHHHHHHHHhCCChH
Q 046039 155 VVA---WNSMIIGLAKCGEIDE-SR---RLF---------DKMVS--R-------------NTVSWNSMISGYVRNVKFK 203 (502)
Q Consensus 155 ~~~---~~~l~~~~~~~~~~~~-a~---~~~---------~~~~~--~-------------~~~~~~~l~~~~~~~~~~~ 203 (502)
... ...++.+.......+. .. ... ..+.. | -..-+..+.+...+..++.
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 000 0111111111000000 00 000 00000 0 1123556778888888999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHH-------HHHHHHHHhcCChHHHH
Q 046039 204 EALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVV-------TAIIDMYCKCGCPERAL 276 (502)
Q Consensus 204 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~A~ 276 (502)
.|++-+....+.. -+..-++....++...|.+..+........+.|.. ...-| ..+..+|.+.++++.++
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 9999999888764 44445556666788888888887777776666532 12222 22444666778888999
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCC
Q 046039 277 QVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY-ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIK 355 (502)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 355 (502)
..|.+....... -....+....+++........-.+ |.. .-...-...+.+.|++..|+..|.++++. .+
T Consensus 319 ~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P 389 (539)
T KOG0548|consen 319 KYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DP 389 (539)
T ss_pred HHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CC
Confidence 988875432211 122333445556666555554432 332 22223356678899999999999999874 36
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 356 PSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
-|...|..-..+|.+.|.+..|..=.+...+ .| ....|..-+.++....+|++|++.|.++++.+|++..+...+..|
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRC 469 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 6788999999999999999999987776654 34 445777778888888999999999999999999999998888888
Q ss_pred HHhcCCchHHHHHH
Q 046039 434 YAASYQFEEAMEER 447 (502)
Q Consensus 434 ~~~~g~~~~A~~~~ 447 (502)
...+.......++.
T Consensus 470 ~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 470 VEAQRGDETPEETK 483 (539)
T ss_pred HHHhhcCCCHHHHH
Confidence 77643333334433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-06 Score=74.57 Aligned_cols=328 Identities=12% Similarity=0.046 Sum_probs=196.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhH-HHHHHHHH
Q 046039 55 WNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFI-HNTIIYMY 133 (502)
Q Consensus 55 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~ 133 (502)
.--+...+...|++..|+.-|....+- .+.+-.++-.-...|...|+...|+.=+...++. +||-.. ...-...+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 334566677788888888888887752 2222223333445677788888888888888774 555432 23344567
Q ss_pred HhCCChhHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 046039 134 ANCGFLSEARLMFDEVDT-EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREM 212 (502)
Q Consensus 134 ~~~g~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 212 (502)
.+.|.++.|..=|+.+.. .|+..+- ..+..+.-..++- ......+..+...|+...|+.....+
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~---~eaqskl~~~~e~------------~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLV---LEAQSKLALIQEH------------WVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchh---HHHHHHHHhHHHH------------HHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 788888888888877664 2322111 1111111111111 11223445566788999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHH
Q 046039 213 QEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNS 292 (502)
Q Consensus 213 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 292 (502)
++.. +.|...|..-..+|...|++..|+.-++...+.. ..+...+..+-..+...|+.+.++..+++..+.|+..
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH--- 256 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH--- 256 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch---
Confidence 8874 6788888888899999999999988887777665 3355566667778888899998888888777655431
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHH
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-----IKHYSCMVDA 367 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~ 367 (502)
..+...|+++++. . .... -+......++|.++.+-.+...+. .|. ...+..+..+
T Consensus 257 -----------K~Cf~~YKklkKv--~---K~le-s~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 257 -----------KLCFPFYKKLKKV--V---KSLE-SAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTC 316 (504)
T ss_pred -----------hhHHHHHHHHHHH--H---HHHH-HHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeec
Confidence 1122222222210 0 0000 011122344555555555555542 222 2223344455
Q ss_pred HHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 368 LGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
+...|++.+|++...++.. .| |+.++.--..+|.--..++.|+.-|+++.+.+|++..+
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 5566677777766666553 24 35566666666766667777777777777777666544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-08 Score=78.62 Aligned_cols=92 Identities=11% Similarity=-0.159 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASY 438 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 438 (502)
+..+...+...|++++|...|+.+.. .| +...|..++.++...|++++|...|+++++++|+++..+..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 33455566666777777666666543 23 55566666666777777777777777777777777777777777777777
Q ss_pred CchHHHHHHHHhhh
Q 046039 439 QFEEAMEERLLMKE 452 (502)
Q Consensus 439 ~~~~A~~~~~~~~~ 452 (502)
++++|+..++...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777776666654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.5e-08 Score=85.50 Aligned_cols=183 Identities=10% Similarity=-0.029 Sum_probs=115.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 046039 255 NTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL------SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY--ISFI 326 (502)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~ 326 (502)
....+..++..+...|+++.|...|+++....+ .++..+..++...|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 455566666777777777777777776654322 24566667777777777777777777764322111 1344
Q ss_pred HHHHHHhcC--------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046039 327 AVLTACNHS--------GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLS 398 (502)
Q Consensus 327 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 398 (502)
.+..++... |+++.|.+.++.+...+ +-+...+..+.... ...... ......+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~~a~ 174 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMD----YLRNRL-----------AGKELYVAR 174 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHH----HHHHHH-----------HHHHHHHHH
Confidence 444444433 56667777777766531 11222222111110 000000 011225667
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNES---CGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
.+.+.|++++|+..++++++..|+++ ..+..++.++...|++++|..+++.+....
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 78999999999999999999877654 688999999999999999999999887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-08 Score=90.08 Aligned_cols=249 Identities=14% Similarity=0.038 Sum_probs=187.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
..-+.+.|+..+|.-.|+..++.+ |-+...|..|.......++-..|+..+++.++.. +.+..+.-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 344678888999999999988876 6678888888888888888889999999998876 45677888888889999999
Q ss_pred HHHHHHHhcCCCCCcc-hHHHHH---------HHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhcCCCHHHH
Q 046039 273 ERALQVFNTVPKKGLS-CWNSMV---------FGLAMNGYENEAIKLFSGLQ-SSNLKPDYISFIAVLTACNHSGKVNQA 341 (502)
Q Consensus 273 ~~A~~~~~~~~~~~~~-~~~~l~---------~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~~~~a 341 (502)
..|+.+|++.....+. .|.... ..+.....+....++|-++. ..+..+|+.....|.-.|.-.|.+++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 9999988876432211 110000 11112223344555555544 445457788888888888889999999
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046039 342 KDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD-AIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419 (502)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 419 (502)
+..|+.+.. .-|-|..+||.|...++...+.++|+..|+++.. +|. +..+..|+.+|+..|.|++|.+.|-.++.+
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999985 3344688999999999999999999999999875 575 457888999999999999999999999985
Q ss_pred CCC-----C-----cchHHHHHHHHHhcCCchHHHH
Q 046039 420 DKN-----E-----SCGYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 420 ~p~-----~-----~~~~~~l~~~~~~~g~~~~A~~ 445 (502)
.+. . ..+|..|-.++.-.++.|-+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 543 1 2477777777777787774444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-08 Score=82.19 Aligned_cols=148 Identities=9% Similarity=0.054 Sum_probs=115.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC
Q 046039 294 VFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL 373 (502)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (502)
+..|...|+++.+....+.+... . ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 34577777777765554333221 1 012235677888888888776 446678899999999999999
Q ss_pred HHHHHHHHHhCCC-CC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 046039 374 LEEAEKLIRSMPS-DP-DAIIWGSLLSAC-RKHGN--IEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERL 448 (502)
Q Consensus 374 ~~~A~~~~~~~~~-~~-~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 448 (502)
+++|...|++... .| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++.++...|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998865 34 677888888864 67777 5999999999999999999999999999999999999999999
Q ss_pred HhhhcCC
Q 046039 449 LMKEVKI 455 (502)
Q Consensus 449 ~~~~~~~ 455 (502)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9986654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.4e-06 Score=87.87 Aligned_cols=359 Identities=10% Similarity=-0.006 Sum_probs=209.0
Q ss_pred HHHHhcCCChHHHHHHHHHhHhcCCCCCCc-ccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 046039 59 IRGFSQSSTPRNAILLFIDMLVTSPIQPQR-LTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCG 137 (502)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 137 (502)
...+...|++.+|...+...... +.. .............|+++.+...++.+.......+..........+...|
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~----~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDA----QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCH----HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 44455666666665544433211 100 1111122233455666666666655422111122333344455556677
Q ss_pred ChhHHHHHHhhcCC---CCC---e---e--eHHHHHHHHHhcCCHHHHHHHHHccCC--C--Ch----hhHHHHHHHHHh
Q 046039 138 FLSEARLMFDEVDT---EFD---V---V--AWNSMIIGLAKCGEIDESRRLFDKMVS--R--NT----VSWNSMISGYVR 198 (502)
Q Consensus 138 ~~~~a~~~~~~~~~---~~~---~---~--~~~~l~~~~~~~~~~~~a~~~~~~~~~--~--~~----~~~~~l~~~~~~ 198 (502)
+++++...+..... ..+ . . ....+...+...|++++|...++.... + +. ...+.+...+..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 77777777665421 100 1 1 111222345567888888877776532 1 11 234556667778
Q ss_pred CCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhccCchHHHHHHHHHHHHc----CCC--C-chhHHHHHHHHH
Q 046039 199 NVKFKEALELFREMQEQNI---KP--SEFTMVSLLNACAKLGAIRQGEWIHNFLVTN----CFE--L-NTIVVTAIIDMY 266 (502)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~ 266 (502)
.|++++|...+++.....- .+ ....+..+...+...|+++.|...+++..+. +.. + ....+..+...+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 8999999988888764310 11 1234455566777889999998888776653 211 1 123344556667
Q ss_pred HhcCChHHHHHHHhcCCCC----C----cchHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHH
Q 046039 267 CKCGCPERALQVFNTVPKK----G----LSCWNSMVFGLAMNGYENEAIKLFSGLQSSN--LKPDYI--SF--IAVLTAC 332 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~~----~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~--~~--~~l~~~~ 332 (502)
...|++++|...+.+.... + ...+..+...+...|++++|...+.+..... ...... .. ...+..+
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW 663 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence 7789999998888765431 1 2244456667788999999999888875421 111110 10 1112334
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC------C--CHHHHHHHHHHHH
Q 046039 333 NHSGKVNQAKDYFTLMTETYKIKPS---IKHYSCMVDALGRAGLLEEAEKLIRSMPSD------P--DAIIWGSLLSACR 401 (502)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~--~~~~~~~l~~~~~ 401 (502)
...|+.+.|..++...... ..... ...+..+..++...|+.++|...++++... + ...+...+..++.
T Consensus 664 ~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 5578999999998776532 11111 111345677788999999999998877531 1 1235667788899
Q ss_pred hcCCHHHHHHHHHHHHhcCCC
Q 046039 402 KHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 402 ~~~~~~~A~~~~~~~~~~~p~ 422 (502)
+.|+.++|...+.+++++...
T Consensus 743 ~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HcCCHHHHHHHHHHHHHHhCc
Confidence 999999999999999986543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-05 Score=77.53 Aligned_cols=390 Identities=14% Similarity=0.130 Sum_probs=236.4
Q ss_pred HHHHHHHHHhCCC--CChHHHHHHHHhhhCCCCChhHHHHHhccCCC-C-----CcchHHHHHHHHhcCCChHHHHHHHH
Q 046039 5 KKIHAHLIKTGLA--KDPIAASRILAFCTSPAGDINYAYLVFTQIKK-P-----NLFIWNTIIRGFSQSSTPRNAILLFI 76 (502)
Q Consensus 5 ~~i~~~~~~~g~~--p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~ 76 (502)
+++.+++.+.+++ .|+...+....++ .-.+-+.+-+++++++.- + +...-|.|+-...+. +..++.+..+
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAf-MtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~ 1044 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAF-MTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHH-HhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHH
Confidence 3455555555553 2344445555555 555556666666666542 2 222333444433333 3344444444
Q ss_pred HhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCee
Q 046039 77 DMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVV 156 (502)
Q Consensus 77 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 156 (502)
++-.- ..| .+...+...+-+++|..+|+.. ..+....+.|+. ..+.+++|.+.-++.. .+.
T Consensus 1045 rLdny--Da~------~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n---~p~ 1105 (1666)
T KOG0985|consen 1045 RLDNY--DAP------DIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN---EPA 1105 (1666)
T ss_pred HhccC--Cch------hHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC---ChH
Confidence 44321 111 1233344445566666666544 223444444433 3455666666655543 456
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046039 157 AWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGA 236 (502)
Q Consensus 157 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 236 (502)
+|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.|++-.+++...++..-.|... +.++-+|++.++
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNR 1181 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhch
Confidence 7888888888899998888877654 466778889999999999999999888887766555544 467778888888
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046039 237 IRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS 316 (502)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (502)
+.+.++++ ..|+......+..-|...|.++.|.-+|..+ .-|..|...+...|++..|.+.-++.
T Consensus 1182 l~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-----SN~a~La~TLV~LgeyQ~AVD~aRKA--- 1246 (1666)
T KOG0985|consen 1182 LTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV-----SNFAKLASTLVYLGEYQGAVDAARKA--- 1246 (1666)
T ss_pred HHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhhhc---
Confidence 77766554 3577777778888888888888888887753 46888888888899998888765543
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHH
Q 046039 317 NLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWG 394 (502)
Q Consensus 317 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 394 (502)
.+..||..+-.+|...+.+..|. +..- .+-....-...|+..|...|-+++-+.+++.... ......|.
T Consensus 1247 ---ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfT 1317 (1666)
T KOG0985|consen 1247 ---NSTKTWKEVCFACVDKEEFRLAQ-----ICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFT 1317 (1666)
T ss_pred ---cchhHHHHHHHHHhchhhhhHHH-----hcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHH
Confidence 25678888888887766554442 2111 2223444556678888888888888888876542 23333455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-cC-C------CCcchHHHHHHHHHhcCCchHHH
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIE-LD-K------NESCGYVLMSNLYAASYQFEEAM 444 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~ 444 (502)
-|.-.|.+- ++++..+.++-... ++ | +....|.-|...|.+-..||.|.
T Consensus 1318 ELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1318 ELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 555555443 34555554444332 11 1 12334555555565555555553
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-06 Score=73.78 Aligned_cols=325 Identities=9% Similarity=0.005 Sum_probs=220.5
Q ss_pred CCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCCeeeHHH-
Q 046039 83 PIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EFDVVAWNS- 160 (502)
Q Consensus 83 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~- 160 (502)
|+.....-+.+++..+.+..++..|++++..-.++. +.+......+..+|....++..|-..++++.. .|...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 344444457788888889999999999999888775 33677788899999999999999999999875 354444443
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCC-ChhhHHHHHH--HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCch
Q 046039 161 MIIGLAKCGEIDESRRLFDKMVSR-NTVSWNSMIS--GYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAI 237 (502)
Q Consensus 161 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 237 (502)
-...+.+.+.+..|+++...|... +...-..-+. .....+++..+..++++....| +..+.....-...+.|++
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 246677889999999999988764 2222111122 2335678888888887765333 344444555556789999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc-----------------------------
Q 046039 238 RQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS----------------------------- 288 (502)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------------------- 288 (502)
+.|.+-|+...+-+--.....|+ +.-+..+.|+++.|++...++.++++.
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 99999999998866444455565 445566889999999988876543211
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHH
Q 046039 289 ---CWNSMVFGLAMNGYENEAIKLFSGLQSSN-LKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCM 364 (502)
Q Consensus 289 ---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 364 (502)
++|.-...+.+.|+++.|.+.+.+|--+. ...|+.|+..+.-.- ..+++....+-+.-+... .+-...||..+
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANl 316 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANL 316 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHH
Confidence 33444445668899999999888885432 345677776664332 234566666666666543 22346788899
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 046039 365 VDALGRAGLLEEAEKLIRSMPSD----PDAIIWGSLLSACR-KHGNIEMAKQAAKQI 416 (502)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~ 416 (502)
+-.||+..-++-|-.++.+-..- .+...|+ |+.++. ....+++|.+-++.+
T Consensus 317 LllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999998775532 2344444 333333 345677776665554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.9e-08 Score=75.15 Aligned_cols=119 Identities=10% Similarity=0.025 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
......+...+...|++++|..+|+-+.. .| +...|..|+.++...|++++|+..|.++..++|++|..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 44445566677899999999999988754 34 67789999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHh
Q 046039 436 ASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQE 499 (502)
Q Consensus 436 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 499 (502)
..|+.+.|.+.|+..+... ..+|+..++........+.+.+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhhc
Confidence 9999999999999987543 2467777777777777666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-07 Score=74.97 Aligned_cols=124 Identities=13% Similarity=0.011 Sum_probs=103.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 046039 307 IKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS 386 (502)
Q Consensus 307 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (502)
..++++..+. .|+. +.....++...|++++|...|+.... --+.+...+..+..++.+.|++++|...|+++..
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3456666653 3443 55567788899999999999999886 3355788889999999999999999999998875
Q ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046039 387 -DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA 436 (502)
Q Consensus 387 -~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 436 (502)
.| ++..+..++.++...|++++|+..|+++++..|+++..+...+.+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 24 778999999999999999999999999999999999999888876543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-06 Score=76.47 Aligned_cols=229 Identities=11% Similarity=0.035 Sum_probs=122.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG-AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYC 267 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (502)
+..+-..+...++.++|+.++.++++.. +-+...|.....++...| +++++...++.+.+.. +.+..+++.-...+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 3333444455556666666666666543 223333443333444444 3455555555555543 222233332222222
Q ss_pred hcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 046039 268 KCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTL 347 (502)
Q Consensus 268 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 347 (502)
+.|+. ..++++.+++++.+.+.+ +..+|....-++...|+++++++.+++
T Consensus 118 ~l~~~-----------------------------~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~ 167 (320)
T PLN02789 118 KLGPD-----------------------------AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQ 167 (320)
T ss_pred HcCch-----------------------------hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22221 013455555555554332 455565555555566666666666666
Q ss_pred hhhhcCCCCChhHHHHHHHHHHhc---CC----HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 046039 348 MTETYKIKPSIKHYSCMVDALGRA---GL----LEEAEKLIRSMP-SDP-DAIIWGSLLSACRK----HGNIEMAKQAAK 414 (502)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~ 414 (502)
+++. -+.+...|+....++.+. |. .+++.....++. ..| +...|+.+...+.. .++..+|.+++.
T Consensus 168 ~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 168 LLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred HHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 6653 123344444444333332 22 234555553333 334 55677777777766 245567888888
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcC------------------CchHHHHHHHHhh
Q 046039 415 QIIELDKNESCGYVLMSNLYAASY------------------QFEEAMEERLLMK 451 (502)
Q Consensus 415 ~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 451 (502)
++...+|+++.++..|+.+|.... ..++|.++++.+.
T Consensus 246 ~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 246 EVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 888888888888888888887642 2366777777773
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.2e-05 Score=73.88 Aligned_cols=353 Identities=13% Similarity=0.083 Sum_probs=230.8
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCC-CCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHH
Q 046039 50 PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPI-QPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNT 128 (502)
Q Consensus 50 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 128 (502)
.|+..-+..+.++...+-+.+-+++++++.-++.. .-+...-+.|+-...+ -+...+.++.+++.... .| .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------D 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------h
Confidence 45555666677777777777777777777543111 1111122333333333 34555666666654432 11 2
Q ss_pred HHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHH-hcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHH
Q 046039 129 IIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLA-KCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALE 207 (502)
Q Consensus 129 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 207 (502)
+.......+-+++|..+|++.. .+..-+..+. .-+.++.|.+.-++..+ +..|..+..+-.+.|...+|++
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~------~n~~A~~VLie~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD------MNVSAIQVLIENIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHHHHhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHH
Confidence 3344556666778888877654 2222233332 34666777776666554 4678888888888888888887
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc
Q 046039 208 LFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL 287 (502)
Q Consensus 208 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 287 (502)
-|-+. .|+..|.-++..+.+.|.+++-..++....+..-+|.. =+.|+-+|++.++..+.++++. .++.
T Consensus 1126 Syika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~ 1194 (1666)
T KOG0985|consen 1126 SYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNV 1194 (1666)
T ss_pred HHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCc
Confidence 77442 36678889999999999999999888888777655543 3568888999888888777654 3555
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 046039 288 SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDA 367 (502)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (502)
.......+-|...|.++.|.-+|.. ..-|..+...+...|+++.|...-++. .+..+|..+..+
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFA 1258 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHH
Confidence 6666777778888888888777653 344666777777788888887654433 356788888888
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 046039 368 LGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
|...+.+.-|.--=-.+. ....-..-++..|...|-+++.+.+++..+.+...+-.++.-|+..|.+- +.++-.+.+
T Consensus 1259 Cvd~~EFrlAQiCGL~ii--vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1259 CVDKEEFRLAQICGLNII--VHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred HhchhhhhHHHhcCceEE--EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 876666554432100000 23345667888999999999999999999998888888888888777654 344444433
Q ss_pred H
Q 046039 448 L 448 (502)
Q Consensus 448 ~ 448 (502)
+
T Consensus 1336 ~ 1336 (1666)
T KOG0985|consen 1336 K 1336 (1666)
T ss_pred H
Confidence 3
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.6e-06 Score=78.02 Aligned_cols=405 Identities=14% Similarity=0.093 Sum_probs=255.9
Q ss_pred CCcchHHHHHH--HHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHh-C-------C
Q 046039 50 PNLFIWNTIIR--GFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQ-G-------L 119 (502)
Q Consensus 50 ~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~ 119 (502)
=|..+-..++. .|..-|+.+.|.+-.+-+.. ...|..+.+.|.+.++.+-|.-.+-.|... | .
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 45555556654 45677999998887776653 357899999999998888887776665431 1 1
Q ss_pred CCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCC-ChhhHHHHHHHHHh
Q 046039 120 EFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSR-NTVSWNSMISGYVR 198 (502)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~ 198 (502)
..+..+-....-.....|.+++|+.+|++.. -|..|=..|...|.+++|.++-+.--+- =..||......+-.
T Consensus 797 q~~~e~eakvAvLAieLgMlEeA~~lYr~ck------R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 797 QNGEEDEAKVAVLAIELGMLEEALILYRQCK------RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred hCCcchhhHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 1111333344445567888999999998876 3555667778889999998887654221 23356666677777
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 046039 199 NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQV 278 (502)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 278 (502)
.++.+.|+++|++.. .|--..+..|. .++...+.+.+. ..|...|.......-..|+.+.|+.+
T Consensus 871 r~Di~~AleyyEK~~----~hafev~rmL~------e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAG----VHAFEVFRMLK------EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred hccHHHHHHHHHhcC----ChHHHHHHHHH------hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHH
Confidence 888888888887653 22222222222 122222333332 23556777777777788999999999
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC-CCC-
Q 046039 279 FNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYK-IKP- 356 (502)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~- 356 (502)
|.... -|..++...|-+|+.++|-.+-++ . -|......+.+.|...|++.+|..+|.+...-.+ +..
T Consensus 935 Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlc 1003 (1416)
T KOG3617|consen 935 YSSAK-----DYFSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLC 1003 (1416)
T ss_pred HHHhh-----hhhhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99865 477788888899999999888654 2 3666777888999999999999999988753100 000
Q ss_pred -ChhHHHHHHHHHH--hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--------H--hcCCC-
Q 046039 357 -SIKHYSCMVDALG--RAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQI--------I--ELDKN- 422 (502)
Q Consensus 357 -~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~--~~~p~- 422 (502)
....-..|...+. ...+.-.|-++|++... .+...+..|-+.|.+.+|+++.=+- + .++|.
T Consensus 1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s 1078 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEELGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS 1078 (1416)
T ss_pred HhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC
Confidence 0000111222222 23344455566666542 1233445677788887777654221 1 25654
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhhc----CCccCCceeEEEECCEEEEEE-eCCCCCCCchHHHHHHHHHHHHH
Q 046039 423 ESCGYVLMSNLYAASYQFEEAMEERLLMKEV----KIEKEPGCSLIEVDGEVHEFV-AGGRLHPKAPEVYLLLNDLGLLI 497 (502)
Q Consensus 423 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~ 497 (502)
+|.....-+..+....++++|..++-..++. ++....+.+ +-..+.+.+ ..+...|+-++....|.++.+..
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~---vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c 1155 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVR---VTEEFAELMTPTKDDMPNEQERKQVLEQVAELC 1155 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHH
Confidence 6778888888888999999999876555431 111111111 001122222 33357888888899999999988
Q ss_pred HhcCC
Q 046039 498 QEMGS 502 (502)
Q Consensus 498 ~~~~~ 502 (502)
.++|+
T Consensus 1156 ~qQG~ 1160 (1416)
T KOG3617|consen 1156 LQQGA 1160 (1416)
T ss_pred Hhccc
Confidence 88875
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.9e-07 Score=89.20 Aligned_cols=202 Identities=15% Similarity=0.140 Sum_probs=153.3
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-C-------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 046039 253 ELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK-G-------LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYIS 324 (502)
Q Consensus 253 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 324 (502)
+.+...|-..|......++.++|+++.+++... + ...|.++++.-...|.-+...+.|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 344566777777778888888888888776542 1 237788887777778777888888888774 223356
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC---HHHHHHHHHHH
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PD---AIIWGSLLSAC 400 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~~l~~~~ 400 (502)
|..|...|.+.+.+++|.++++.|.++++ .....|..++..+.+.++-+.|..++.++... |. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 77788888888888888888888888554 56677888888888888888888888776542 32 34455566667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccC
Q 046039 401 RKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKE 458 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 458 (502)
.+.|+.+++..+|+..+...|.....|..++..-.++|+.+.+..+|+++...++.+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 7888888888888888888888888888888888888888888888888888776543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-06 Score=87.36 Aligned_cols=134 Identities=12% Similarity=0.151 Sum_probs=81.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 046039 287 LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY-ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMV 365 (502)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 365 (502)
+..+..|.....+.|++++|..+++...+. .|+. .....++.++.+.+++++|...+++... .-+-+......+.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a 161 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 445666666666666666666666666663 3333 4455555666666666666666666664 2233445555566
Q ss_pred HHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 366 DALGRAGLLEEAEKLIRSMPS-DPD-AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
.++.+.|++++|..+|+++.. .|+ ..++..+..++...|+.++|...|+++++...+..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 666666666666666666653 233 45666666666666666666666666666544333
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.9e-06 Score=80.66 Aligned_cols=245 Identities=14% Similarity=-0.007 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 046039 203 KEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTV 282 (502)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 282 (502)
..|+..+++.++.. ..+..+++.|.-. ...|++.-+.-.|-+-.... +....+|..+.-.+.+..+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 46777777776653 3455555555433 55566666655555444433 334555555666666666666666666655
Q ss_pred CCCCcc---hHH---------------------------------------HHHHHHHhcCChHHHHHHHHHHHHC----
Q 046039 283 PKKGLS---CWN---------------------------------------SMVFGLAMNGYENEAIKLFSGLQSS---- 316 (502)
Q Consensus 283 ~~~~~~---~~~---------------------------------------~l~~~~~~~g~~~~a~~~~~~~~~~---- 316 (502)
..-++. .|- .-.......|+.++-+...+.+-..
T Consensus 877 qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 877 QSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 543221 222 2222223344443333222222110
Q ss_pred -----CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHH----HHHHHHHhcCCHHHHHHHHHhCCCC
Q 046039 317 -----NLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYS----CMVDALGRAGLLEEAEKLIRSMPSD 387 (502)
Q Consensus 317 -----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (502)
+.+.....|........+.+.+..|.+...+...-...+.+...|+ .+.+.++..|.++.|..-+.....+
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 1222334555555555555555555555444332111122333333 3445566777777777766555433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 388 PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES---CGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.+..+..+-+.. .-.|+++++.+.|++++.+-.++. .....++.+...++..+.|...+-+..
T Consensus 1037 vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 232222222222 446899999999999998654433 455666667777888888887655544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.2e-06 Score=79.52 Aligned_cols=215 Identities=9% Similarity=0.083 Sum_probs=122.1
Q ss_pred CchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC--CChhhHHHHHHHHHh
Q 046039 121 FDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS--RNTVSWNSMISGYVR 198 (502)
Q Consensus 121 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~ 198 (502)
|-...-..+...+.+.|-...|..+|+++. .|.-.+.+|...|+..+|..+..+..+ |++..|..+.+....
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 333444555666666666666766666654 555666666666666666666555433 455556666665555
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 046039 199 NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQV 278 (502)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 278 (502)
..-+++|.++.+..-.. .-..+.....+.++++++.+.++.-.+.+ +....+|-.+..+..+.++++.|...
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 55566666665543221 11112222233566666666666655554 33455555566666666666666666
Q ss_pred HhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 046039 279 FNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTE 350 (502)
Q Consensus 279 ~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (502)
|.....- +..+||.+-.+|.+.|+-.+|...+++..+.+ .-+...+...+....+.|.+++|++.+.++..
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 6654432 23466666666666666666666666666655 22344444444455566666666666666543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-06 Score=77.02 Aligned_cols=184 Identities=12% Similarity=-0.005 Sum_probs=130.4
Q ss_pred CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc---c---h
Q 046039 218 KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFEL--NTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL---S---C 289 (502)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~---~ 289 (502)
......+..+...+...|+++.|...++++....... ....+..+..++...|++++|...++++.+..+ . +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3456677888888999999999999999998865221 124667788999999999999999998875432 2 4
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhH
Q 046039 290 WNSMVFGLAMN--------GYENEAIKLFSGLQSSNLKPDY-ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKH 360 (502)
Q Consensus 290 ~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 360 (502)
+..+..++... |++++|.+.|+++.... |+. .....+..... . .. ... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~------~~-~~~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----L------RN-RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----H------HH-HHH--------HH
Confidence 55566666654 78899999999998863 332 22221111100 0 00 000 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPSD-P----DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
...+...|.+.|++++|...+++.... | ....+..++.++...|++++|..+++.+....|+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 124667788999999999999887643 3 3468889999999999999999999888776653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.9e-06 Score=83.87 Aligned_cols=232 Identities=12% Similarity=0.098 Sum_probs=175.6
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCC-------CCeeeHHHHHHHHHhcCCHHHHHHH
Q 046039 105 RDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTE-------FDVVAWNSMIIGLAKCGEIDESRRL 177 (502)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~ 177 (502)
+.|.+....++. -|.+...|-..|......+++++|++++++.... .-...|.++++.-...|.-+...++
T Consensus 1442 esaeDferlvrs--sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1442 ESAEDFERLVRS--SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred cCHHHHHHHHhc--CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344444433333 2445667888899999999999999999887642 2234788888888888888899999
Q ss_pred HHccCCC-C-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC-
Q 046039 178 FDKMVSR-N-TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFEL- 254 (502)
Q Consensus 178 ~~~~~~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~- 254 (502)
|+++.+- | -..|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++++.-...
T Consensus 1520 FeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1520 FERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 9998663 3 456888999999999999999999999876 34667788899999999999999999999988763221
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 046039 255 NTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY--ISFIAVL 329 (502)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~ 329 (502)
........+..-.+.|+.+.+..+|+...... ...|+..+..-.++|+.+.+..+|++....++.|-. ..|.-.+
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 24445556667778999999999999877654 448999999999999999999999999998876654 3444444
Q ss_pred HHHhcCCCHH
Q 046039 330 TACNHSGKVN 339 (502)
Q Consensus 330 ~~~~~~~~~~ 339 (502)
..--..|+-.
T Consensus 1679 eyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1679 EYEKSHGDEK 1688 (1710)
T ss_pred HHHHhcCchh
Confidence 4333444433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-05 Score=66.56 Aligned_cols=225 Identities=15% Similarity=0.067 Sum_probs=132.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHH-HHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046039 190 NSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQG-EWIHNFLVTNCFELNTIVVTAIIDMYCK 268 (502)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (502)
..+.++|...|++.....-. .... .|.......+......-++.+.- .++.+.+.......+......-...|+.
T Consensus 45 ~y~~raylAlg~~~~~~~eI---~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~ 120 (299)
T KOG3081|consen 45 VYMYRAYLALGQYQIVISEI---KEGK-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMH 120 (299)
T ss_pred HHHHHHHHHccccccccccc---cccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhc
Confidence 33445555555544332222 1111 33333344444333333333332 2334444444333333333344556777
Q ss_pred cCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCCHHHHHHH
Q 046039 269 CGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH----SGKVNQAKDY 344 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~ 344 (502)
.|++++|++...... +..+...=+..+.+..+++-|.+.+++|.+- .+..|.+.|..++.+ .+.+..|.-+
T Consensus 121 ~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyi 195 (299)
T KOG3081|consen 121 DGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYI 195 (299)
T ss_pred CCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHH
Confidence 888888888877732 2223333344556677788888888888763 256677767666543 3467788888
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCC
Q 046039 345 FTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNI-EMAKQAAKQIIELDK 421 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~p 421 (502)
|+++.. +.+|+..+.+....++...|++++|..++++...+ .++.+...++.+-...|.. +-..+.+.++....|
T Consensus 196 feE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 196 FEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 888875 56788888888888888888888888888877654 4566666666555555544 444556666666777
Q ss_pred CCcc
Q 046039 422 NESC 425 (502)
Q Consensus 422 ~~~~ 425 (502)
.++.
T Consensus 274 ~h~~ 277 (299)
T KOG3081|consen 274 EHPF 277 (299)
T ss_pred cchH
Confidence 7653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-05 Score=70.56 Aligned_cols=140 Identities=14% Similarity=0.045 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCCh---hhHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046039 158 WNSMIIGLAKCGEIDESRRLFDKMVSRNT---VSWNSMISGYVRNV-KFKEALELFREMQEQNIKPSEFTMVSLLNACAK 233 (502)
Q Consensus 158 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 233 (502)
+..+-..+...+..++|+.+.++++..++ .+|+....++...| ++++++..++++.+.+ +.+..+|......+.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 44555666778899999999999866444 45555556667777 5899999999998875 5566667665555555
Q ss_pred cCch--HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHh
Q 046039 234 LGAI--RQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAM 299 (502)
Q Consensus 234 ~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~ 299 (502)
.|+. +.+..+++.+++.. +-+..+++...-++...|+++++++.++++.+.| ..+|+.....+.+
T Consensus 119 l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR 188 (320)
T ss_pred cCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence 6653 56777887777765 4466777777777777777777777777766543 3456555544443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.3e-07 Score=83.76 Aligned_cols=187 Identities=12% Similarity=0.132 Sum_probs=121.3
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046039 253 ELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTAC 332 (502)
Q Consensus 253 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 332 (502)
+|-...-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+..+ -+|++..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 3444455566777777888888888887753 566677778888888888887777766 367777777777766
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHH
Q 046039 333 NHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAK 410 (502)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~ 410 (502)
...--+++|.++.+....+ .-..+.....+.++++++.+.|+.-.. +| ...+|..++.+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 5555566777666654332 111222223345666666666655432 22 4556666666666667777777
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 411 QAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+.|...+.++|++.+.|+++..+|.+.|+..+|...+++..+.+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 77777777777777777777777777777777776666666655
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-06 Score=70.87 Aligned_cols=155 Identities=8% Similarity=0.027 Sum_probs=117.6
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 046039 263 IDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAK 342 (502)
Q Consensus 263 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 342 (502)
+..|...|+++.+....+.+..+. ..+...++.++++..+++..+.+ +.+...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777787777655543322111 01223566788888888887764 347888999999999999999999
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHH-HHhcCC--HHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046039 343 DYFTLMTETYKIKPSIKHYSCMVDA-LGRAGL--LEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQII 417 (502)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 417 (502)
..|+...+. .+.+...+..+..+ +.+.|+ .++|.+++++.... | +...+..++..+...|++++|+..|++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999863 34467788888876 467777 59999999998753 5 67789999999999999999999999999
Q ss_pred hcCCCCcchHH
Q 046039 418 ELDKNESCGYV 428 (502)
Q Consensus 418 ~~~p~~~~~~~ 428 (502)
+..|.+..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99887665443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.7e-06 Score=70.20 Aligned_cols=154 Identities=14% Similarity=0.087 Sum_probs=101.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh
Q 046039 291 NSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR 370 (502)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (502)
..+...+...|+-+....+........ .-+.......+....+.|++..|+..+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 334455555666666666555543321 22444444566666777777777777777765 556667777777777777
Q ss_pred cCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 046039 371 AGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 371 ~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
.|+++.|..-|.+..+ . .++...+.++..+.-.|+.+.|..++..+....+.+..+-..|+.+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777766543 2 355566777777777777777777777777666667777777777777777777776653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-06 Score=71.20 Aligned_cols=135 Identities=19% Similarity=0.131 Sum_probs=113.1
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 046039 319 KPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSL 396 (502)
Q Consensus 319 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 396 (502)
.|+......+...+...|+-+....+...... ..+.+......++....+.|++..|...|++... .+|...|+-+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 34333335566677778888888887777543 4445666777789999999999999999999865 3689999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 397 LSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 397 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
+.+|.+.|+++.|...|.+++++.|+++.++..++..|.-.|+++.|..++......+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999988876544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.1e-07 Score=72.38 Aligned_cols=97 Identities=23% Similarity=0.273 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
......+...+...|++++|.+.|+.+.. .| +...|..++.++...|++++|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 34455566667777777777777776643 23 55677777777777788888888888877777877777888888888
Q ss_pred hcCCchHHHHHHHHhhhcC
Q 046039 436 ASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 436 ~~g~~~~A~~~~~~~~~~~ 454 (502)
..|++++|...++...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8888888888777776543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00038 Score=64.37 Aligned_cols=397 Identities=14% Similarity=0.109 Sum_probs=237.9
Q ss_pred CCChHHHHHHHHhhhCCCCChhHHHHHhccCCC--C-CcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHH
Q 046039 17 AKDPIAASRILAFCTSPAGDINYAYLVFTQIKK--P-NLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPS 93 (502)
Q Consensus 17 ~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 93 (502)
+-|...|+.|+..+ ....+++++..++++.. | ....|..-|+...+.++++....+|.+.+.. ..+...|..
T Consensus 17 P~di~sw~~lire~--qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk---vLnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREA--QTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK---VLNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHH--ccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HhhHhHHHH
Confidence 56788999999988 44499999999999876 3 4567899999999999999999999999876 345555666
Q ss_pred HHHHHHh-cCCchh----HHHHHHHHH-HhCCCC-chhHHHHHHHHH---------HhCCChhHHHHHHhhcCCCCCe--
Q 046039 94 LFKAYAQ-LGLARD----GAQLHGRVV-KQGLEF-DQFIHNTIIYMY---------ANCGFLSEARLMFDEVDTEFDV-- 155 (502)
Q Consensus 94 l~~~~~~-~~~~~~----a~~~~~~~~-~~~~~~-~~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~~~~~-- 155 (502)
-+.--.+ .++... ..+.|+-.. +.|..+ +..+|+..+..+ ....+++...+++.++...|=.
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 5554322 233333 223333332 344333 234555555443 2233566777888877653311
Q ss_pred -------eeHHHHHHHH-------HhcCCHHHHHHHHHccCC------CC---------------hhhHHHHHHHHHhCC
Q 046039 156 -------VAWNSMIIGL-------AKCGEIDESRRLFDKMVS------RN---------------TVSWNSMISGYVRNV 200 (502)
Q Consensus 156 -------~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~------~~---------------~~~~~~l~~~~~~~~ 200 (502)
..|..=|+.. -+...+..|.++++++.. .+ ...|-.+|..-..++
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 1121111111 113344555555555411 00 011323332211111
Q ss_pred C--------hHHHHHHHHHH-HHCCCCCCHHHHHH-----HHHHHhccCc-------hHHHHHHHHHHHHcCCCCchhHH
Q 046039 201 K--------FKEALELFREM-QEQNIKPSEFTMVS-----LLNACAKLGA-------IRQGEWIHNFLVTNCFELNTIVV 259 (502)
Q Consensus 201 ~--------~~~a~~~~~~m-~~~~~~~~~~~~~~-----ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 259 (502)
- -....-.+++. .-.+..|+.....+ .-..+...|+ -+++..+++...+.-...+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11122222222 22233333221111 1112223333 34455566655544333344444
Q ss_pred HHHHHHHHhcC---ChHHHHHHHhcCCCC---C-cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 046039 260 TAIIDMYCKCG---CPERALQVFNTVPKK---G-LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP-DYISFIAVLTA 331 (502)
Q Consensus 260 ~~l~~~~~~~g---~~~~A~~~~~~~~~~---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~ 331 (502)
..+...--..- ..+.....++++... + ..+|..++..-.+..-...|..+|.+..+.+..+ +......++..
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 44433211111 244455555544432 2 3478888998889999999999999999988776 56667777776
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCCH
Q 046039 332 CNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD---P--DAIIWGSLLSACRKHGNI 406 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~ 406 (502)
+| .++..-|.++|+.-.+.+| .++..-...++-+...|+-..|..+|++.... | ...+|..++..-..-|+.
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 65 4799999999999887544 44455567788888999999999999998754 2 456999999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 046039 407 EMAKQAAKQIIELDK 421 (502)
Q Consensus 407 ~~A~~~~~~~~~~~p 421 (502)
..+.++-++.....|
T Consensus 489 ~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887666
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.3e-06 Score=82.73 Aligned_cols=199 Identities=5% Similarity=-0.010 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 046039 187 VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMY 266 (502)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (502)
.++..++.+|-+.|+.+++...|+++++.. +-|....+.+...++.. ++++|.+++.+++.. |
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------F 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------H
Confidence 355666777777777777777777777766 55666777777777766 777777776666543 4
Q ss_pred HhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 046039 267 CKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS-NLKPDYISFIAVLTACNHSGKVNQAKDYF 345 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (502)
...+++..+..+|.++...++. +++.-..+.+.+... |..--..++..+-..|...++++++..++
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~-------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSD-------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcc-------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 4555666666666666554333 222222333333322 22223344555556666667777777777
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCc
Q 046039 346 TLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKH-GNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~ 424 (502)
+.+.+. -+-|......++.+|... +.. ...|++ |-.+ ...... .++..++.-|++.+..+|.+.
T Consensus 247 K~iL~~--~~~n~~a~~~l~~~y~~k--Y~~-~~~~ee---------~l~~-s~l~~~~~~~~~~i~~fek~i~f~~G~y 311 (906)
T PRK14720 247 KKILEH--DNKNNKAREELIRFYKEK--YKD-HSLLED---------YLKM-SDIGNNRKPVKDCIADFEKNIVFDTGNF 311 (906)
T ss_pred HHHHhc--CCcchhhHHHHHHHHHHH--ccC-cchHHH---------HHHH-hccccCCccHHHHHHHHHHHeeecCCCE
Confidence 777652 223444445555555411 110 111111 1000 011111 355667777777776666666
Q ss_pred chHHHH
Q 046039 425 CGYVLM 430 (502)
Q Consensus 425 ~~~~~l 430 (502)
.++...
T Consensus 312 v~H~~W 317 (906)
T PRK14720 312 VYHRTW 317 (906)
T ss_pred EEEcCC
Confidence 555433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00055 Score=67.18 Aligned_cols=407 Identities=14% Similarity=0.115 Sum_probs=194.6
Q ss_pred CCCChhHHHHHhccCCC--CCcchHHHHHHH--HhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHH
Q 046039 33 PAGDINYAYLVFTQIKK--PNLFIWNTIIRG--FSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGA 108 (502)
Q Consensus 33 ~~~~~~~A~~~~~~~~~--~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 108 (502)
..+++..|.....++.+ ||.. |...+.+ +.+.|+.++|..+++..... +.. |..|...+-.+|...++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGL-KGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccC-CCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 34566666666666544 4432 2233332 35666777777666665533 211 4456666666666677777777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH----HHHHHhhcCCCCCeeeHHHHHHHHHhcC----------CHHHH
Q 046039 109 QLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSE----ARLMFDEVDTEFDVVAWNSMIIGLAKCG----------EIDES 174 (502)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a 174 (502)
.+|++..+. .|+......+..+|.+.+++.+ |.++++..+ .+...+-++++...+.. -..-|
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p--k~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP--KRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--cccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 777776664 3345555666666666665543 444444332 23333334444333311 11223
Q ss_pred HHHHHccCCCCh--hh---HHHHHHHHHhCCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 046039 175 RRLFDKMVSRNT--VS---WNSMISGYVRNVKFKEALELFR-EMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLV 248 (502)
Q Consensus 175 ~~~~~~~~~~~~--~~---~~~l~~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 248 (502)
.+.++.+.+.+. .+ .......+...|.+++|++++. ...+.-..-+...-+..+..+...+++.+..++..++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 444444433220 01 1111223344566666666663 23332223333344445555566666666666666666
Q ss_pred HcCCCCchhHHHHHHHHHH----------------hcCChHHHHHHHhcCCCC-CcchHHHHHHHH---HhcCChHHHHH
Q 046039 249 TNCFELNTIVVTAIIDMYC----------------KCGCPERALQVFNTVPKK-GLSCWNSMVFGL---AMNGYENEAIK 308 (502)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~----------------~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~---~~~g~~~~a~~ 308 (502)
..+.. | |...++.+. ..+..+...+...+.... .-..|-+-+.++ ...|+.+++.-
T Consensus 254 ~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 254 EKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred HhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHH
Confidence 66532 1 221111111 111122222222221111 011222222222 23355555444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChh-------HHHHHHHHHHhcCC-----HHH
Q 046039 309 LFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIK-------HYSCMVDALGRAGL-----LEE 376 (502)
Q Consensus 309 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~-----~~~ 376 (502)
.|-+- .|-+|- +..=+..|...=..+.-..++..... ..++.. -+.+.+..-.-.|. -+.
T Consensus 330 ~y~~k--fg~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 330 YYFKK--FGDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred HHHHH--hCCCcH---hHhhHHHhhccCCHHHHHHHHHHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 33221 111221 11111222222233444444444432 122221 01222222222231 122
Q ss_pred HHHHHHhCC-------C---C--CCH---------HHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 377 AEKLIRSMP-------S---D--PDA---------IIWGSLLSACRKHGNI---EMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 377 A~~~~~~~~-------~---~--~~~---------~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
-..++++.. + . |.. .+.+.|+..+.+.++. -+|+-+++..+...|.|+.+-..++.
T Consensus 402 i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLir 481 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIR 481 (932)
T ss_pred HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHH
Confidence 222222211 1 0 211 1345677888887765 46777888888899999999999999
Q ss_pred HHHhcCCchHHHHHHHHhhhcCCccC
Q 046039 433 LYAASYQFEEAMEERLLMKEVKIEKE 458 (502)
Q Consensus 433 ~~~~~g~~~~A~~~~~~~~~~~~~~~ 458 (502)
+|.-.|-+..|.+.++.+--+.++.+
T Consensus 482 iY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 482 IYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHhcCChhHHHHHHhcchHHhhhc
Confidence 99999999999999999988877755
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-05 Score=66.70 Aligned_cols=243 Identities=12% Similarity=0.060 Sum_probs=158.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
++-+.-.|++..++..-...... +.+...-..+.++|...|...... ..+.... .+....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 45556678888887766655433 234444445566666666654332 2222222 23333333333333334443
Q ss_pred HHHHH-HHhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 046039 273 ERALQ-VFNTVPKKG----LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTL 347 (502)
Q Consensus 273 ~~A~~-~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 347 (502)
+.-.. +.+.+.... ......-+..|+..|++++|++...... +......=+..+.+..+.+.|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 233333221 1222333456888999999999887622 222222333445677789999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046039 348 MTETYKIKPSIKHYSCMVDALGR----AGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDK 421 (502)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 421 (502)
|..- .+..+.+.|..++.+ .+...+|.-+|+++..+ |++.+.+-...++...|++++|..+++.++..++
T Consensus 163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9753 345566767776653 46799999999999874 8888999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCchHHHH-HHHHhh
Q 046039 422 NESCGYVLMSNLYAASYQFEEAME-ERLLMK 451 (502)
Q Consensus 422 ~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 451 (502)
++|.++..++.+-...|.-.++.+ .+..+.
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 999999999988888888877654 555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5e-05 Score=69.22 Aligned_cols=138 Identities=20% Similarity=0.171 Sum_probs=63.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcC
Q 046039 294 VFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAG 372 (502)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 372 (502)
.-.+...|++++|+..++.++..- +-|+.........+...|+..+|.+.++.+... .|+ ....-.+..+|.+.|
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcC
Confidence 333444455555555555554431 112233333334444555555555555555432 222 333344445555555
Q ss_pred CHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 373 LLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 373 ~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
++.+|+.+++..... | ++..|..|..+|...|+..++..... ..|...|++++|...+...
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHH
Confidence 555555555444321 2 44455555555555555444433222 2344455555555555555
Q ss_pred hh
Q 046039 451 KE 452 (502)
Q Consensus 451 ~~ 452 (502)
.+
T Consensus 452 ~~ 453 (484)
T COG4783 452 SQ 453 (484)
T ss_pred HH
Confidence 44
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-05 Score=72.78 Aligned_cols=122 Identities=17% Similarity=0.117 Sum_probs=106.3
Q ss_pred HHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHH
Q 046039 330 TACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PD-AIIWGSLLSACRKHGNIE 407 (502)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~ 407 (502)
..+...|+++.|+..++.+.+ ..+-|+.........+.+.|+.++|.+.++++... |+ ...+..+..+|.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 345567899999999999987 44556666677788999999999999999998763 76 567788999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 408 MAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 408 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+|+.++.+....+|+++..|..|+.+|..+|+..+|.....+....
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887776544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.3e-05 Score=75.78 Aligned_cols=166 Identities=16% Similarity=0.126 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCCee-eHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCC
Q 046039 123 QFIHNTIIYMYANCGFLSEARLMFDEVDT-EFDVV-AWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNV 200 (502)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (502)
...+..|+..+...+++++|.++.+.... .|+.. .|..+...+.+.++...+..+ .++.......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 34455555555555555555555553332 22222 222222233333333222222 2334444455
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 046039 201 KFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFN 280 (502)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 280 (502)
++.-+..++..|... .-+...+..+..+|.+.|+.+++..+++++++.. +-++.+.|.+...|... +.++|..++.
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 555555555555553 3344567777778888888888888888888776 55777777777777777 7777777776
Q ss_pred cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046039 281 TVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS 316 (502)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (502)
+.. ..+...+++.++.+++.++...
T Consensus 174 KAV-----------~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 174 KAI-----------YRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHH-----------HHHHhhhcchHHHHHHHHHHhc
Confidence 642 3355555666666666666654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-07 Score=52.95 Aligned_cols=32 Identities=41% Similarity=0.492 Sum_probs=20.0
Q ss_pred CCCCchhHHHHHHHHHHhCCChhHHHHHHhhc
Q 046039 118 GLEFDQFIHNTIIYMYANCGFLSEARLMFDEV 149 (502)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 149 (502)
|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666655
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-06 Score=79.46 Aligned_cols=124 Identities=16% Similarity=0.133 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSAC 400 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~ 400 (502)
.....++..+...++++.|.++++++.+. .|+ ....++..+...++-.+|.+++.+...+ | +...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34456667777788999999999998865 254 3445788888888999999998887653 4 667777888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 401 RKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.+.++++.|+.+.+++.+..|++...|..|+.+|...|++++|+-.++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999988876
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.6e-06 Score=66.23 Aligned_cols=118 Identities=15% Similarity=0.060 Sum_probs=94.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C
Q 046039 309 LFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-D 387 (502)
Q Consensus 309 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 387 (502)
.+++....... +......+...+...|++++|.+.++.+... .+.+...+..+...+...|++++|...+++... .
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555554222 3455667777888899999999999998763 355678888899999999999999999988754 2
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 046039 388 -PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVL 429 (502)
Q Consensus 388 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 429 (502)
.+...+..++.++...|++++|...|+++++.+|++..+...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 124 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSEL 124 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 467788889999999999999999999999999998775433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.2e-07 Score=52.14 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=23.6
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 353 KIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
|+.||..+|+.|+.+|++.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 666777777777777777777777777777663
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.9e-05 Score=77.30 Aligned_cols=143 Identities=12% Similarity=0.084 Sum_probs=118.4
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046039 252 FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAV 328 (502)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 328 (502)
.+.++..+..|.....+.|.+++|+.+++.+.+.. ...+..++..+.+.+++++|+...++....... +......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 45678889999999999999999999999887643 447888899999999999999999999986432 56677788
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHH
Q 046039 329 LTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLL 397 (502)
Q Consensus 329 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~ 397 (502)
..++...|++++|..+|+++.. ..+-+...+..+..++...|+.++|...|++.... |....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 8889999999999999999987 33445778888999999999999999999998653 5555555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.2e-07 Score=61.34 Aligned_cols=65 Identities=26% Similarity=0.299 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-CchHHHHHHHHhhhc
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASY-QFEEAMEERLLMKEV 453 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 453 (502)
++.+|..++..+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999999999999 799999999988754
|
... |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.6e-05 Score=62.82 Aligned_cols=179 Identities=14% Similarity=0.082 Sum_probs=121.7
Q ss_pred cCChHHHHHHHhcCCCC------Ccc---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHH
Q 046039 269 CGCPERALQVFNTVPKK------GLS---CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVN 339 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~~------~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 339 (502)
..+.++..+++..+... +.. .|..++-+....|+.+.|...++++...- +-+...-..-..-+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 35677777777765431 222 34445556667788888888888887763 222233222223345568888
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046039 340 QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQII 417 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 417 (502)
+|+++++.+... -+.|..++..-+......|+.-+|++-+....+. .|...|.-+...|...|++++|.-++++++
T Consensus 104 ~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 888888888874 3556667766666667778777887776665543 578888888888888888888888888888
Q ss_pred hcCCCCcchHHHHHHHHHhcCC---chHHHHHHHHh
Q 046039 418 ELDKNESCGYVLMSNLYAASYQ---FEEAMEERLLM 450 (502)
Q Consensus 418 ~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~ 450 (502)
=..|-++..+..++.++.-.|. .+-|.+++.+.
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888776665 33344444443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.5e-06 Score=64.79 Aligned_cols=124 Identities=18% Similarity=0.194 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHH----HHHHHHH
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PDAI----IWGSLLS 398 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~----~~~~l~~ 398 (502)
|..++..+ ..++...+...++.+...++-.+ .....-.+...+...|++++|...|+.+... |+.. ....|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33333333 35666777776777766422111 1222233455666777777777777776543 3322 3445666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
.+...|++++|+..++.. .-.+..+..+..+|.+|.+.|++++|...|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777777777777777552 223344556777777777777777777777653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.5e-05 Score=64.86 Aligned_cols=200 Identities=13% Similarity=0.112 Sum_probs=151.6
Q ss_pred ccCchHHHHHHHHHHHHc---C-CCCch-hHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHH---HHHHHHhcCChH
Q 046039 233 KLGAIRQGEWIHNFLVTN---C-FELNT-IVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNS---MVFGLAMNGYEN 304 (502)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~ 304 (502)
...+.++..+++.++... | ..++. .+|..++-+....|+.+.|..+++.+...-+.++.. -...+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 346788888888888753 3 33443 446667777788999999999999876543332222 123355679999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046039 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSM 384 (502)
Q Consensus 305 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (502)
+|+++++.+.+.+ +.|..++..-+...-..|..-+|++-+....+ .+..|...|..+...|...|++++|.--++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999986 33666777666666777888899998888887 66789999999999999999999999999987
Q ss_pred CC-CC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 385 PS-DP-DAIIWGSLLSACRKHG---NIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 385 ~~-~~-~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
.- +| ++..+..+...+...| +.+.|.+.|.+++++.|.+...+..+-.+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 53 46 5667777887776555 7889999999999999976666655554433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0017 Score=60.19 Aligned_cols=395 Identities=10% Similarity=0.066 Sum_probs=231.7
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHH
Q 046039 50 PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTI 129 (502)
Q Consensus 50 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 129 (502)
-|+.+|+.||+-+..+ ..+++.+.++++... .+-....|..-|+.-.+.++++.+..+|.+.+..-+ +...|...
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 5788999999988666 999999999999953 344456888889999999999999999999887533 46666655
Q ss_pred HHHHHh-CCChhHHHH----HHhh----cC-CCCCeeeHHHHHHH---------HHhcCCHHHHHHHHHccCC-C-----
Q 046039 130 IYMYAN-CGFLSEARL----MFDE----VD-TEFDVVAWNSMIIG---------LAKCGEIDESRRLFDKMVS-R----- 184 (502)
Q Consensus 130 ~~~~~~-~g~~~~a~~----~~~~----~~-~~~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~-~----- 184 (502)
+.--.+ .|+...+.. .|+- +. ...+...|+..+.. +....+++...+++.++.. |
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 553322 344333222 2221 11 12334445555443 3345577778888888744 2
Q ss_pred ----ChhhHHHHHHHH-------HhCCChHHHHHHHHHHHH--CCCCCCHH---------------HHHHHHHHHhccCc
Q 046039 185 ----NTVSWNSMISGY-------VRNVKFKEALELFREMQE--QNIKPSEF---------------TMVSLLNACAKLGA 236 (502)
Q Consensus 185 ----~~~~~~~l~~~~-------~~~~~~~~a~~~~~~m~~--~~~~~~~~---------------~~~~ll~~~~~~~~ 236 (502)
|-..|..=|+.. -+...+..|.++++++.. .|+.-+.. .|..+|.- -+.+.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNp 251 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCC
Confidence 222222222211 123446677777777643 23211111 12222221 11111
Q ss_pred h---------HHHHHHHHHHHH-cCCCCchhHH-----HHHHHHHHhcCCh-------HHHHHHHhcCCCC----CcchH
Q 046039 237 I---------RQGEWIHNFLVT-NCFELNTIVV-----TAIIDMYCKCGCP-------ERALQVFNTVPKK----GLSCW 290 (502)
Q Consensus 237 ~---------~~a~~~~~~~~~-~~~~~~~~~~-----~~l~~~~~~~g~~-------~~A~~~~~~~~~~----~~~~~ 290 (502)
+ ....-++++.+. .+..|+.... ....+.+...|+. +++..+++..... +...|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 111222222221 2222222111 1112233344443 3444444443321 11223
Q ss_pred HHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHH
Q 046039 291 NSMVFGLAMN---GYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVD 366 (502)
Q Consensus 291 ~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~ 366 (502)
..+..---.. ...+....+++++...-..--..+|..++....+..-...|..+|.++.+. +..+ ++.++++++.
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALME 410 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHH
Confidence 3222211111 135566667777665322222356777788878888899999999999887 5555 6777788887
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC-CcchHHHHHHHHHhcCCch
Q 046039 367 ALGRAGLLEEAEKLIRSMPSD-PDAI-IWGSLLSACRKHGNIEMAKQAAKQIIEL--DKN-ESCGYVLMSNLYAASYQFE 441 (502)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~ 441 (502)
.|| .++..-|.++|+--..+ +|.. .-...+..+...++-..|..+|++++.. .|+ ...+|..+...-+.-|+..
T Consensus 411 y~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 665 68899999999876554 5444 4456778888899999999999999975 443 3468888887777789999
Q ss_pred HHHHHHHHhhh
Q 046039 442 EAMEERLLMKE 452 (502)
Q Consensus 442 ~A~~~~~~~~~ 452 (502)
-+.++-+++..
T Consensus 490 si~~lekR~~~ 500 (656)
T KOG1914|consen 490 SILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHH
Confidence 88888766643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.2e-07 Score=65.91 Aligned_cols=78 Identities=19% Similarity=0.179 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHhCCCC-C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 046039 371 AGLLEEAEKLIRSMPSD-P---DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 371 ~g~~~~A~~~~~~~~~~-~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 446 (502)
.|+++.|+.+++++... | +...+..++.+|.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777666542 3 334555577777777777777777777 666676667777777778888888888777
Q ss_pred HHH
Q 046039 447 RLL 449 (502)
Q Consensus 447 ~~~ 449 (502)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.7e-07 Score=60.01 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=46.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 401 RKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
...|++++|++.|+++++.+|+++.++..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999998888754
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.8e-06 Score=63.86 Aligned_cols=95 Identities=13% Similarity=-0.007 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHH
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPSD-PD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE---SCGYVLMS 431 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 431 (502)
++..++..+.+.|++++|...|+++... |+ ...+..++.++.+.|+++.|...|++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445556666667777777666666432 22 2345556667777777777777777777666654 34566667
Q ss_pred HHHHhcCCchHHHHHHHHhhhcC
Q 046039 432 NLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 432 ~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
.++...|++++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777777777777777766554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.6e-06 Score=75.52 Aligned_cols=106 Identities=19% Similarity=0.071 Sum_probs=79.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCC
Q 046039 328 VLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGN 405 (502)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~ 405 (502)
-...+...|+++.|+..|+++++. .+.+...|..+..+|...|++++|+..++++.. .| +...|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345566778888888888888763 334566777778888888888888888887754 24 56677888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 406 IEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 406 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
+++|+..|+++++++|+++.+...+..+..
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888888888888888877777665533
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-06 Score=58.62 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=50.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 396 LLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 396 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
++..+...|++++|...|+++++.+|+++.++..++.++...|++++|..+++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 566788889999999999999998899999999999999999999999998888876543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4e-06 Score=71.42 Aligned_cols=101 Identities=25% Similarity=0.172 Sum_probs=82.5
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHH
Q 046039 331 ACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEM 408 (502)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~ 408 (502)
-..+.+++.+|+..|.+.++ -.+-|...|..=..+|.+.|.++.|++-.+.... .| ...+|..|+.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 46677899999999999885 3344566677778889999999999998888764 34 34589999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 409 AKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 409 A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
|++.|+++++++|++......|-.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 9999999999999999777777654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.1e-05 Score=60.29 Aligned_cols=125 Identities=15% Similarity=0.143 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC--hhHHHHHHH
Q 046039 291 NSMVFGLAMNGYENEAIKLFSGLQSSNLKPD--YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS--IKHYSCMVD 366 (502)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~ 366 (502)
..++..+ ..++...+...++.+........ ......+...+...|++++|...|+.+... ...|+ ......|..
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHH
Confidence 3344444 47777888888888877643211 233444556778889999999999988875 32222 223445677
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046039 367 ALGRAGLLEEAEKLIRSMPSD-PDAIIWGSLLSACRKHGNIEMAKQAAKQII 417 (502)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 417 (502)
.+...|++++|...++..... ..+..+...+..|.+.|++++|...|++++
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 788899999999999876544 345567778888999999999999988763
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.32 E-value=6e-06 Score=60.28 Aligned_cols=94 Identities=22% Similarity=0.206 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASY 438 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 438 (502)
+..++..+...|++++|...++++... | +...+..++..+...|++++|.+.++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677778889999999988877542 3 44677788888888999999999999999999988888999999999999
Q ss_pred CchHHHHHHHHhhhcC
Q 046039 439 QFEEAMEERLLMKEVK 454 (502)
Q Consensus 439 ~~~~A~~~~~~~~~~~ 454 (502)
++++|...++...+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999888876543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0029 Score=57.50 Aligned_cols=411 Identities=13% Similarity=0.107 Sum_probs=217.1
Q ss_pred CCCCChhHHHHHhccCCC---CCcc------hHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHH--Hh
Q 046039 32 SPAGDINYAYLVFTQIKK---PNLF------IWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAY--AQ 100 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~---~~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~--~~ 100 (502)
-+.+++.+|.++|.++.+ .+.. .-+.++++|.. ++.+.....+....+. .| ...|..+..++ -+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~---~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ---FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh---cC-CchHHHHHHHHHHHH
Confidence 466889999999988865 2222 23456666654 4566666666666654 23 34566666553 46
Q ss_pred cCCchhHHHHHHHHHHh--CCCC------------chhHHHHHHHHHHhCCChhHHHHHHhhcCC-------CCCeeeHH
Q 046039 101 LGLARDGAQLHGRVVKQ--GLEF------------DQFIHNTIIYMYANCGFLSEARLMFDEVDT-------EFDVVAWN 159 (502)
Q Consensus 101 ~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~ 159 (502)
.+.+..|.+.+..-... +..+ |-..-+..+.++...|.+.+++.+++++.. .-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 77888888777655443 2111 122225667788888999999888887654 25667777
Q ss_pred HHHHHHHhcCCHHH--------HHHHHHcc-------CC----------CChhhHHHHHHHHHhC--CChHHHHHHHHHH
Q 046039 160 SMIIGLAKCGEIDE--------SRRLFDKM-------VS----------RNTVSWNSMISGYVRN--VKFKEALELFREM 212 (502)
Q Consensus 160 ~l~~~~~~~~~~~~--------a~~~~~~~-------~~----------~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m 212 (502)
.++-.+.++=-++. ....++.+ .. |.......++....-. .+..--..+++..
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 76555554221111 11111111 00 1111111111111110 1111122222222
Q ss_pred HHCCCCCCHHH-HHHHHHHHhccCchHHHHHHHHHHHHcCCCC----chhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc
Q 046039 213 QEQNIKPSEFT-MVSLLNACAKLGAIRQGEWIHNFLVTNCFEL----NTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL 287 (502)
Q Consensus 213 ~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 287 (502)
...-+.|+-.. ...+...+.+ +.+++..+.+.+....+.+ -..++..++....+.++...|.+.+.-+..-++
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 33334454332 2233333333 5566666555555443221 245667777777888888888887775543322
Q ss_pred c---------hHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcCCC-HHHHHHHHHHhhhh
Q 046039 288 S---------CWNSMVFGLAM----NGYENEAIKLFSGLQSSNLKPDYI--SFIAVLTACNHSGK-VNQAKDYFTLMTET 351 (502)
Q Consensus 288 ~---------~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~-~~~a~~~~~~~~~~ 351 (502)
. +-..+-+..+. .-+...=+.++......++.-..- -...-+.-+.+.|. -++|+++++.+.+-
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 2 11122222221 112233344555555543321111 11112223555565 78889998888752
Q ss_pred cCCCCChhHHHHHHH----HHHhc---CCHHHHHHH---HHhCCCC----CCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 046039 352 YKIKPSIKHYSCMVD----ALGRA---GLLEEAEKL---IRSMPSD----PDAIIWGSLLSA--CRKHGNIEMAKQAAKQ 415 (502)
Q Consensus 352 ~~~~~~~~~~~~l~~----~~~~~---g~~~~A~~~---~~~~~~~----~~~~~~~~l~~~--~~~~~~~~~A~~~~~~ 415 (502)
.+-|..+-|.+.. .|... ..+.+-..+ .++..-. .+...-+.|..+ +...|++.++.-.-.-
T Consensus 410 --t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 410 --TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 2223333333222 22221 112222222 1222111 233455555544 5679999999998888
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 416 IIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 416 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
+.+..| ++.+|..+|.++....++++|..++..+.-
T Consensus 488 L~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 488 LTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 889999 899999999999999999999999988753
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.28 E-value=3e-05 Score=71.32 Aligned_cols=123 Identities=17% Similarity=0.096 Sum_probs=95.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHH
Q 046039 160 SMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQ 239 (502)
Q Consensus 160 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 239 (502)
+++..+...++++.|+.+|+++.+.++.....++..+...++..+|.+++++.++.. +.+..........+.+.++.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 455566667888888888888877777777778888888888888888888888653 5566666666677788888888
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 046039 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK 284 (502)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 284 (502)
|..+.+++.... +.+..+|..|..+|...|+++.|+..++.++-
T Consensus 253 AL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 253 ALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888888888764 44566888888888888888888888887763
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-05 Score=69.43 Aligned_cols=112 Identities=16% Similarity=0.099 Sum_probs=95.1
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCcchH
Q 046039 353 KIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKH---GNIEMAKQAAKQIIELDKNESCGY 427 (502)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~ 427 (502)
..+-|...|-.|...|.+.|+++.|..-|.+... .+++..+..+..++..+ ....++..+|+++++.+|+|+...
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 3456789999999999999999999999988754 25677777777776543 356899999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEE
Q 046039 428 VLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLI 464 (502)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 464 (502)
..|+..+...|++.+|...++.|.+......|+.+.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 9999999999999999999999999887766665544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.5e-05 Score=68.49 Aligned_cols=156 Identities=13% Similarity=0.082 Sum_probs=109.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH-------------
Q 046039 295 FGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHY------------- 361 (502)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------- 361 (502)
.++.-.|++++|...--...+.... +......--.++.-.++.+.+...|++.+. ..|+...-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHH
Confidence 3456678888888776666654321 222222222234456788888888887763 33432211
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 362 SCMVDALGRAGLLEEAEKLIRSMPS------DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
..=..-..+.|++.+|.+.|.+... +|+...|.....+..+.|+..+|+.-.+.+++++|.-...+..-+.|+.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 1112234578899999999988764 2566678788888889999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHhhhcC
Q 046039 436 ASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 436 ~~g~~~~A~~~~~~~~~~~ 454 (502)
..++|++|.+.++...+..
T Consensus 333 ~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999888775443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=68.47 Aligned_cols=107 Identities=21% Similarity=0.158 Sum_probs=79.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCC
Q 046039 295 FGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGL 373 (502)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 373 (502)
.-+.+.+++.+|+..|.+.++... -|.+-|..-..+|.+.|.++.|++-.+..+. +.|+ ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCc
Confidence 446678899999999999998643 3667778888889999999999888887764 3443 6788889999999999
Q ss_pred HHHHHHHHHhCCC-CCCHHHHH-HHHHHHHhcCC
Q 046039 374 LEEAEKLIRSMPS-DPDAIIWG-SLLSACRKHGN 405 (502)
Q Consensus 374 ~~~A~~~~~~~~~-~~~~~~~~-~l~~~~~~~~~ 405 (502)
+++|++.|++... .|+..+|. .|-.+-.+.+.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9999999988775 47655553 33333333333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.2e-05 Score=59.19 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD----AIIWGSL 396 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l 396 (502)
.++..+...+...|++++|...|+.+.....-.+ ....+..+..++.+.|++++|...|+.+.. .|+ ...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3455566677778888888888888876422111 134556678888888999999988887754 233 4567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 046039 397 LSACRKHGNIEMAKQAAKQIIELDKNESCGYV 428 (502)
Q Consensus 397 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 428 (502)
+.++...|++++|...++++++..|+++....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 88899999999999999999999998775443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.5e-05 Score=64.25 Aligned_cols=97 Identities=15% Similarity=0.063 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
...+..+...+...|++++|...|++.... |+ ...+..++.++.+.|++++|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445667777788888888888888877531 22 3578888899999999999999999999999999999999999
Q ss_pred HHHhcCC--------------chHHHHHHHHhhhcC
Q 046039 433 LYAASYQ--------------FEEAMEERLLMKEVK 454 (502)
Q Consensus 433 ~~~~~g~--------------~~~A~~~~~~~~~~~ 454 (502)
+|...|+ +++|.+++++....+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 9988777 455555555555433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.2e-05 Score=70.66 Aligned_cols=97 Identities=12% Similarity=-0.031 Sum_probs=78.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcC
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAG 372 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 372 (502)
....+...|++++|+..|+++++... .+...+..+..++...|++++|+..++.+... .+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 45567788999999999999998753 36678888888999999999999999999863 3445778888899999999
Q ss_pred CHHHHHHHHHhCCC-CCCHHH
Q 046039 373 LLEEAEKLIRSMPS-DPDAII 392 (502)
Q Consensus 373 ~~~~A~~~~~~~~~-~~~~~~ 392 (502)
++++|...|+++.. .|+...
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHH
Confidence 99999999988764 354333
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.3e-05 Score=58.49 Aligned_cols=89 Identities=18% Similarity=0.088 Sum_probs=78.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFE 441 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 441 (502)
...-+...|++++|..+|+-+.. . -+...|..|+.++...+++++|+..|..+..+++++|......+.||...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 34445689999999999987643 2 467778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 046039 442 EAMEERLLMKE 452 (502)
Q Consensus 442 ~A~~~~~~~~~ 452 (502)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-05 Score=55.44 Aligned_cols=59 Identities=17% Similarity=0.154 Sum_probs=52.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 397 LSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 397 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
...|.+.+++++|.++++++++++|+++..+...+.++...|++++|.+.++...+.++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999999999999999999999999886554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.8e-06 Score=46.65 Aligned_cols=33 Identities=42% Similarity=0.811 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPS 220 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 220 (502)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688899999999999999999999998888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.1e-05 Score=53.97 Aligned_cols=61 Identities=21% Similarity=0.264 Sum_probs=52.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
+...+.+.|++++|...|+++... | +...|..++.++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 567788999999999999998764 6 566889999999999999999999999999999875
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=9e-06 Score=46.02 Aligned_cols=33 Identities=33% Similarity=0.597 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 046039 187 VSWNSMISGYVRNVKFKEALELFREMQEQNIKP 219 (502)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 219 (502)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.6e-06 Score=46.46 Aligned_cols=33 Identities=33% Similarity=0.608 Sum_probs=24.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCC
Q 046039 54 IWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQ 87 (502)
Q Consensus 54 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 87 (502)
+||.+|.+|++.|++++|.++|++|.+. |++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~-g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER-GIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCC
Confidence 5777777777777777777777777776 77776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.03 E-value=6e-05 Score=61.71 Aligned_cols=94 Identities=13% Similarity=-0.148 Sum_probs=76.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P----DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
....+..++..+...|++++|...|++.... | ...+|..++..+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677778888889999999998887431 2 2357889999999999999999999999999999999888888
Q ss_pred HHHH-------hcCCchHHHHHHHHh
Q 046039 432 NLYA-------ASYQFEEAMEERLLM 450 (502)
Q Consensus 432 ~~~~-------~~g~~~~A~~~~~~~ 450 (502)
.++. ..|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 788888666665544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0003 Score=62.66 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=103.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTA-CNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDA 367 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (502)
+|..++....+.+..+.|..+|.+.++.+ ..+...|...+.. +...++.+.|..+|+...+. ++.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 57777888888888999999999998543 3344555555444 33356778899999999984 56678888899999
Q ss_pred HHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 368 LGRAGLLEEAEKLIRSMPSD-PD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
+...|+.+.|..+|++.... |. ...|...+..-.+.|+.+.+..+.+++.+..|++..+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 99999999999999998765 33 3489999999999999999999999999988885544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.99 E-value=6e-05 Score=66.99 Aligned_cols=129 Identities=13% Similarity=0.026 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhh---hhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------C-CCH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMT---ETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-------D-PDA 390 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~~~ 390 (502)
..|..|...|.-.|+++.|+...+.=. +.+|-.. ....+..+..++.-.|+++.|.+.|+.... + ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345555556666778888877655421 2223222 234566677778888888888887765321 1 344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIEL----D--KNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
....+|+++|.-..++++|+..+.+-+.+ + -.....+..|+.+|...|..++|+.+...-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45667888888888888888888776542 2 2245578888888888888888887765544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.023 Score=56.44 Aligned_cols=207 Identities=14% Similarity=0.095 Sum_probs=136.2
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHh
Q 046039 4 LKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLV 80 (502)
Q Consensus 4 ~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 80 (502)
|.+-...+.+. .|+...+..+=+.-..+.|+.++|..+++.... .|..+...+-..|...++.++|..+|+....
T Consensus 28 al~~~~kllkk--~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 28 ALAKLGKLLKK--HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHHHHHHH--CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 44444444443 455555544444434688999999999988754 5777889999999999999999999999985
Q ss_pred cCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC-C---------hhHHHHHHhhcC
Q 046039 81 TSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCG-F---------LSEARLMFDEVD 150 (502)
Q Consensus 81 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~a~~~~~~~~ 150 (502)
. -|+..-...+..+|.+.+.+..-.++--++-+. .+-+...+=++++.....- . ..-|.+.++.+.
T Consensus 106 ~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l 181 (932)
T KOG2053|consen 106 K---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLL 181 (932)
T ss_pred h---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHh
Confidence 4 577777777888888888877655554444443 3334444444555444321 1 233555555555
Q ss_pred CCC-Ceee---HHHHHHHHHhcCCHHHHHHHHHc-----cCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 046039 151 TEF-DVVA---WNSMIIGLAKCGEIDESRRLFDK-----MVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQN 216 (502)
Q Consensus 151 ~~~-~~~~---~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (502)
..+ ...+ .......+...|.+++|++++.. ....+...-+.-+..+...++|.+..++-.++...|
T Consensus 182 ~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 182 EKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred ccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 444 2222 12233455668889999998833 233344445566777888889999999888888876
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.8e-05 Score=53.90 Aligned_cols=93 Identities=24% Similarity=0.202 Sum_probs=57.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcC
Q 046039 327 AVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHG 404 (502)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~ 404 (502)
.+...+...|++++|..+++...+. .+.+...+..+...+...|++++|...++..... | +...+..++..+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3444555566666666666666542 2223345555666666667777777776665431 2 3346667777777777
Q ss_pred CHHHHHHHHHHHHhcCC
Q 046039 405 NIEMAKQAAKQIIELDK 421 (502)
Q Consensus 405 ~~~~A~~~~~~~~~~~p 421 (502)
+++.|...+.++++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 77777777777776665
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.5e-05 Score=45.08 Aligned_cols=33 Identities=24% Similarity=0.539 Sum_probs=21.0
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCC
Q 046039 53 FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQP 86 (502)
Q Consensus 53 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p 86 (502)
.+|+.++.++++.|+++.|.++|+.|.+. |++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~-gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQ-GVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC
Confidence 45666666666666666666666666665 6555
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00025 Score=58.27 Aligned_cols=127 Identities=14% Similarity=0.113 Sum_probs=77.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPD--YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVD 366 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 366 (502)
.+..+...+...|++++|...|++....+..+. ...+..+..++...|++++|...+++.... .+.+...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 455555666666777777777776665433222 345666677777777888888777777653 2233555556666
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046039 367 ALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASY 438 (502)
Q Consensus 367 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 438 (502)
+|...|+...+..-++... ..+++|.++++++++.+|++ +..++..+...|
T Consensus 115 ~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 6666666655544333221 23678889999999989887 333333444444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0011 Score=57.52 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELDKNES---CGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.++..|.+.|.+..|..-++.+++.-|+.+ .....++.+|...|..++|..+.+.+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 456778999999999999999999777754 567888899999999999998876653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.3e-05 Score=54.68 Aligned_cols=80 Identities=24% Similarity=0.271 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 336 GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDP-DAIIWGSLLSACRKHGNIEMAKQAAK 414 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 414 (502)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++....| +......++.+|.+.|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 55566666666665542211233333445566666666666666665521112 22333344556666666666666665
Q ss_pred H
Q 046039 415 Q 415 (502)
Q Consensus 415 ~ 415 (502)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00047 Score=66.64 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
..|..+.......|++++|...++++.. +|+...|..++..+...|++++|.+.+++++.++|.+++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 4444444444445555555555555443 245555555555555555555555555555555555553
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.012 Score=56.50 Aligned_cols=250 Identities=12% Similarity=0.020 Sum_probs=144.9
Q ss_pred ChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHH----H--HHHHHhcCCchhHHH
Q 046039 36 DINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPS----L--FKAYAQLGLARDGAQ 109 (502)
Q Consensus 36 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~----l--~~~~~~~~~~~~a~~ 109 (502)
.+++|.+..+.- |.+..|..+.......-.++.|...|-+...-.|++.-...-.. + ....+--|++++|.+
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 345566555543 56677887777666666667776666655433233211110000 0 111223478888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCC----CCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCC
Q 046039 110 LHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTE----FDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRN 185 (502)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 185 (502)
+|-++-++. ..+..+.+.|||-...++++.-... .-...|+.+...++....|++|.+.|......
T Consensus 756 ~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~- 825 (1189)
T KOG2041|consen 756 LYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT- 825 (1189)
T ss_pred hhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-
Confidence 887775543 2355667788888888888765432 22346778888888888888888877664321
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDM 265 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (502)
...+.++.+..++++-..+... ++.+....-.+...+.+.|.-++|.+.+-+. +. | .+.+..
T Consensus 826 ----e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~t 887 (1189)
T KOG2041|consen 826 ----ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHT 887 (1189)
T ss_pred ----HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHH
Confidence 2345555555555554443333 3555566667777788888777777665332 21 1 123455
Q ss_pred HHhcCChHHHHHHHhcCCCCCcchH--------------HHHHHHHHhcCChHHHHHHHHHHHH
Q 046039 266 YCKCGCPERALQVFNTVPKKGLSCW--------------NSMVFGLAMNGYENEAIKLFSGLQS 315 (502)
Q Consensus 266 ~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (502)
+...++|.+|.++-+...-+.+.+. ..-|..+.+.|++-.|-+++.+|.+
T Consensus 888 Cv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 888 CVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 6677777777777766554433321 1123445556666666666666654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0032 Score=56.51 Aligned_cols=267 Identities=11% Similarity=-0.037 Sum_probs=131.2
Q ss_pred HHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHH
Q 046039 98 YAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESR 175 (502)
Q Consensus 98 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 175 (502)
+.+..++..|+..+...++.++. +..-|..-+..+...|++++|.--.++-.. +.......-.-+++...++..+|.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 44556677788888888877533 455666666666677777776655543332 222333444445555555555555
Q ss_pred HHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHhccCchHHHHHHHHHHHHcCCC
Q 046039 176 RLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNI-KPSEFTMVSL-LNACAKLGAIRQGEWIHNFLVTNCFE 253 (502)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (502)
+.++. ...| ....++..++....... +|...++..+ ..++...|+.++|..+-..+++.. .
T Consensus 138 ~~~~~-----~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~ 200 (486)
T KOG0550|consen 138 EKLKS-----KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-A 200 (486)
T ss_pred HHhhh-----hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-c
Confidence 55551 1111 11222233333222221 2333344333 234456677777776666665543 1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc---------------hHHHHHHHHHhcCChHHHHHHHHHHHHC--
Q 046039 254 LNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS---------------CWNSMVFGLAMNGYENEAIKLFSGLQSS-- 316 (502)
Q Consensus 254 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 316 (502)
.+....-.=..++.-.++.+.|...|++..+.++. .|..-..-..+.|++..|.+.|.+.+..
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 11111111112233455666777777766655443 1222233345566666666666666543
Q ss_pred -CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 317 -NLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 317 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
+..|+...|.....+..+.|+..+|+.--+...+ +.+. ...|..-..++.-.+++++|.+-|++..
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444555555555566666666665555442 1121 1122222233444555666666655543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.002 Score=57.69 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=62.5
Q ss_pred HHHHHhcC-CCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C----CHH-HH
Q 046039 328 VLTACNHS-GKVNQAKDYFTLMTETYKIKPS----IKHYSCMVDALGRAGLLEEAEKLIRSMPSD----P----DAI-IW 393 (502)
Q Consensus 328 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~~~-~~ 393 (502)
+...|... |+++.|++.|++...-+.-... ..++..++..+.+.|++++|.++|+++... + +.. .+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 44456666 7777777777776542211111 345556677788888888888888765321 1 221 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-----chHHHHHHHHH
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIELDKNES-----CGYVLMSNLYA 435 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~ 435 (502)
...+-++...|++..|.+.+++..+.+|.-. .+...|+.++.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 3445566778888888888888888776533 24444554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.012 Score=52.69 Aligned_cols=95 Identities=17% Similarity=0.109 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCHH-HHHHHHHHHhcCCCHHHHHHHHHHhhhhc-CCCCC--hhHH
Q 046039 291 NSMVFGLAMNGYENEAIKLFSGLQSSNL-----KPDYI-SFIAVLTACNHSGKVNQAKDYFTLMTETY-KIKPS--IKHY 361 (502)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~ 361 (502)
..++..+.+.|++++|+++|++...... +.+.. .|...+-++...|+...|.+.++...... ++..+ ....
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 3456667777777777777777665322 12222 23333445566788888888888776431 23223 3445
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHhCC
Q 046039 362 SCMVDALGR--AGLLEEAEKLIRSMP 385 (502)
Q Consensus 362 ~~l~~~~~~--~g~~~~A~~~~~~~~ 385 (502)
..|+.+|-. ...+.+|..-|+.+.
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 566666643 234677777777765
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00023 Score=51.40 Aligned_cols=81 Identities=11% Similarity=0.024 Sum_probs=68.9
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhcCCC-CCCcccHHHHHHHHHhcC--------CchhHHHHHHHHHHhCCCCchh
Q 046039 54 IWNTIIRGFSQSSTPRNAILLFIDMLVTSPI-QPQRLTYPSLFKAYAQLG--------LARDGAQLHGRVVKQGLEFDQF 124 (502)
Q Consensus 54 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~ 124 (502)
+....|..+...+++.....+|+.+++. |+ .|+..+|+.++.+.++.. +.-..+.+|++|+..+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN-~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRN-GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 3445567777789999999999999998 99 999999999999887653 2446788999999999999999
Q ss_pred HHHHHHHHHHh
Q 046039 125 IHNTIIYMYAN 135 (502)
Q Consensus 125 ~~~~l~~~~~~ 135 (502)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00015 Score=64.85 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 390 AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
..++..+..+|.+.+++..|++...++++++|+|+..++.-+.+|...|.++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345667777888888888888888888888888888888888888888888888888887763
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.7e-05 Score=68.69 Aligned_cols=65 Identities=15% Similarity=-0.056 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG---YVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+...|+.++.+|...|++++|+..|+++++++|++... |+.++.+|..+|+.++|+..++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56678888888888888888888888888888888754 888888888888888888888888765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00017 Score=62.93 Aligned_cols=85 Identities=8% Similarity=-0.055 Sum_probs=42.8
Q ss_pred HhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCc
Q 046039 369 GRAGLLEEAEKLIRSMPSD-PD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE---SCGYVLMSNLYAASYQF 440 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 440 (502)
.+.|++++|...|+.+... |+ +..+..++.+|...|++++|...|+++++..|++ +.++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3445555555555544431 22 1244445555555555555555555555554443 23344445555555555
Q ss_pred hHHHHHHHHhhhc
Q 046039 441 EEAMEERLLMKEV 453 (502)
Q Consensus 441 ~~A~~~~~~~~~~ 453 (502)
++|.++++.+.+.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=6e-05 Score=51.04 Aligned_cols=65 Identities=23% Similarity=0.218 Sum_probs=55.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHG-NIEMAKQAAKQIIELDK 421 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 421 (502)
+...|..+...+...|++++|+..|++... .| ++..|..++.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456788888899999999999999988764 34 5668899999999999 79999999999999888
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0052 Score=48.86 Aligned_cols=130 Identities=11% Similarity=0.044 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C---CHHHHH
Q 046039 319 KPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P---DAIIWG 394 (502)
Q Consensus 319 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~ 394 (502)
.|+...-..+..+....|++.+|...|++.... -+..|....-.+.++....+++..|...++.+.+- | ++.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 456655666777777888888888888877663 45556777777777777888888888877776542 1 233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
.+...+...|++..|...|+.++..-|. +......+..+.++|+.++|..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 5677778888888888888888876665 334455556677788777776544444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.1e-05 Score=53.15 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=37.3
Q ss_pred hcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 370 RAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 370 ~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
..|++++|.++|+++.. .| +...+..++.+|.+.|++++|.++++++...+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 45666666666666543 23 4555566666666666666666666666666666655554443
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00033 Score=64.90 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=48.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhcC-CCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046039 54 IWNTIIRGFSQSSTPRNAILLFIDMLVTS-PIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYM 132 (502)
Q Consensus 54 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (502)
....++..+....+.+.+..++-+.+... ....-..|..++++.|...|..+.++.+++.=...|+-||..++|.||+.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 33444444444444555555555444321 01112234445555555555555555555555555555555555555555
Q ss_pred HHhCCChhHHHHHHhhc
Q 046039 133 YANCGFLSEARLMFDEV 149 (502)
Q Consensus 133 ~~~~g~~~~a~~~~~~~ 149 (502)
+.+.|++..|.++...|
T Consensus 148 fl~~~~~~~A~~V~~~~ 164 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEM 164 (429)
T ss_pred HhhcccHHHHHHHHHHH
Confidence 55555555555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00031 Score=52.81 Aligned_cols=86 Identities=21% Similarity=0.062 Sum_probs=58.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHH
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPSD----P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN---ESCGYVLMSNLYA 435 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 435 (502)
+..++-..|+.++|+.+|++.... + -...+..+..++...|++++|..++++.+...|+ +..+...++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445566677777777777766542 1 1235556777777778888888888877776676 5566666677777
Q ss_pred hcCCchHHHHHHHH
Q 046039 436 ASYQFEEAMEERLL 449 (502)
Q Consensus 436 ~~g~~~~A~~~~~~ 449 (502)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888887775543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0014 Score=63.47 Aligned_cols=136 Identities=16% Similarity=0.115 Sum_probs=96.7
Q ss_pred CCCCCHHHHHHHHHHHhc--C---CCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHH
Q 046039 317 NLKPDYISFIAVLTACNH--S---GKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRA--------GLLEEAEKLIR 382 (502)
Q Consensus 317 ~~~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 382 (502)
..+.+...|...+++... . ++...|..+|++..+. .|+ ...|..+..++... ++...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345677778777777432 2 2367888888888753 454 44444444433321 12344555555
Q ss_pred hCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 383 SMPS----DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 383 ~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
+... ..++..|..+.......|++++|...++++++++| +...|..++.++...|+.++|.+.+++....++.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4322 23557788887777788999999999999999999 5789999999999999999999999998766543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.2e-05 Score=43.96 Aligned_cols=33 Identities=36% Similarity=0.542 Sum_probs=30.9
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 046039 412 AAKQIIELDKNESCGYVLMSNLYAASYQFEEAM 444 (502)
Q Consensus 412 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 444 (502)
+|+++++++|+++.+|..|+.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378899999999999999999999999999986
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0011 Score=54.36 Aligned_cols=100 Identities=13% Similarity=0.019 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHH
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACR 401 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~ 401 (502)
+..+...+...|++++|...|+.......-++ ...++..+..+|...|++++|...+++.... | ....+..++..+.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34444444445555555555555543211111 1224455555555555555555555554321 2 2233444444444
Q ss_pred -------hcCCHH-------HHHHHHHHHHhcCCCCc
Q 046039 402 -------KHGNIE-------MAKQAAKQIIELDKNES 424 (502)
Q Consensus 402 -------~~~~~~-------~A~~~~~~~~~~~p~~~ 424 (502)
..|+++ +|..+++++++.+|++.
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 556655 55666666667777644
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=7.9e-05 Score=44.90 Aligned_cols=42 Identities=19% Similarity=0.398 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
.+|..+..+|...|++++|+++|+++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999999999999888874
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0011 Score=51.75 Aligned_cols=96 Identities=13% Similarity=0.009 Sum_probs=61.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046039 185 NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIID 264 (502)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (502)
+....-.+...+...|++++|..+|+.+.... +-+..-|..|.-++-..|++++|...|....... +.++..+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33344445555666777777777777766654 4455555566666666777777777777776665 345666666667
Q ss_pred HHHhcCChHHHHHHHhcC
Q 046039 265 MYCKCGCPERALQVFNTV 282 (502)
Q Consensus 265 ~~~~~g~~~~A~~~~~~~ 282 (502)
++...|+.+.|.+.|+..
T Consensus 112 c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 112 CYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 777777777776666653
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.5e-05 Score=41.30 Aligned_cols=29 Identities=52% Similarity=0.906 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQN 216 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (502)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.012 Score=56.15 Aligned_cols=105 Identities=18% Similarity=0.171 Sum_probs=62.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 046039 300 NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEK 379 (502)
Q Consensus 300 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 379 (502)
+|-.+-++++-+++-. .+..+...+...+.+...+..|-++|..+-.. ..+++.....+++++|..
T Consensus 729 ~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFa 794 (1081)
T KOG1538|consen 729 HGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFA 794 (1081)
T ss_pred ccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHh
Confidence 4444444444444332 24455555555566667777888888877432 346677778888888888
Q ss_pred HHHhCCCC-CCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 380 LIRSMPSD-PDAI-----------IWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 380 ~~~~~~~~-~~~~-----------~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
+-++.++- |++. -|.-.-.+|.+.|+..+|.++++++..
T Consensus 795 lAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 795 LAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 88877652 3322 122223455666677777777766653
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0013 Score=47.56 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=67.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------chHHHHHHHHHHHHcCCCCchhHH
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQNI-KPSEFTMVSLLNACAKLG--------AIRQGEWIHNFLVTNCFELNTIVV 259 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 259 (502)
-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-....+|+.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 999999999999987653 345678899999999999999999
Q ss_pred HHHHHHHHh
Q 046039 260 TAIIDMYCK 268 (502)
Q Consensus 260 ~~l~~~~~~ 268 (502)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0028 Score=47.71 Aligned_cols=94 Identities=17% Similarity=0.163 Sum_probs=63.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHH
Q 046039 292 SMVFGLAMNGYENEAIKLFSGLQSSNLKPD--YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDAL 368 (502)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 368 (502)
.+..++-..|+.++|+.+|++....|+... ...+..+.+++...|++++|..+++.....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345667778888888888888888776644 34566677778888888888888888876421101 222223344566
Q ss_pred HhcCCHHHHHHHHHhCC
Q 046039 369 GRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~ 385 (502)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 77888888888765443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.039 Score=47.96 Aligned_cols=66 Identities=8% Similarity=0.079 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCchHHHHHHHHHHHHcCC
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTM---VSLLNACAKLGAIRQGEWIHNFLVTNCF 252 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 252 (502)
...+-.....+...|++++|.+.|+.+...- +-+.... ..++.++.+.++++.|...+++.++..+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3333344555667788888888888887753 2222222 3455667778888888888888777653
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.053 Score=49.05 Aligned_cols=101 Identities=24% Similarity=0.208 Sum_probs=46.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC
Q 046039 294 VFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL 373 (502)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (502)
+.-+...|+...|.++-++.. .|+..-|...+.+++..++|++-.++-.. +-++.-|..++.+|.+.|+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCCC
Confidence 333444444444444433331 24555555555555555555554443221 1123444555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 046039 374 LEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQA 412 (502)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 412 (502)
..+|..+..++. +..-+..|.+.|++.+|.+.
T Consensus 253 ~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKIP-------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHH
Confidence 555555555532 12233444555555555444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0015 Score=55.23 Aligned_cols=50 Identities=14% Similarity=0.053 Sum_probs=40.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCCchHHHH
Q 046039 396 LLSACRKHGNIEMAKQAAKQIIELDKNESC---GYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 396 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 445 (502)
++..|.+.|.+..|..-++.+++.-|+.+. ....++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 567899999999999999999999888654 57778889999999885543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.012 Score=46.95 Aligned_cols=131 Identities=15% Similarity=0.072 Sum_probs=97.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 046039 288 SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDA 367 (502)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (502)
...-.|..++...|++.+|...|++...--...|......+.++....+++..|...++.+.+...-.-++...-.+.+.
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 34556777888888888888888888776566788888888999889999999999999887643222234445567788
Q ss_pred HHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 368 LGRAGLLEEAEKLIRSMPSD-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
|...|+..+|+..|+...+- |+...-......+.++|+.+++..-+..+.+
T Consensus 170 laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 170 LAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 88999999999999887753 6666655566677788877776665555543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0016 Score=57.02 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P----DAIIWGSL 396 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l 396 (502)
..|...+....+.|++++|...|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+... | ....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3444444444567899999999999887542221 1346677888999999999999999888642 3 34566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 397 LSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 397 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
+.++...|++++|..+|+++++..|++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 88888999999999999999999998764
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00013 Score=40.00 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=18.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhc
Q 046039 54 IWNTIIRGFSQSSTPRNAILLFIDMLVT 81 (502)
Q Consensus 54 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 81 (502)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 5666666666666666666666666654
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00041 Score=47.52 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=56.1
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 365 VDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
...|.+.+++++|.++++.+..- | ++..|...+.++...|++++|.+.|+++++..|+++.......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 35678899999999999988753 4 5668888999999999999999999999999998887655443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0017 Score=60.30 Aligned_cols=61 Identities=21% Similarity=0.214 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 291 NSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
.+++..|...|..+.++.+++.=...|+-||..+++.++..+.+.|++..|.++...|...
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 3444444555555555555555555555555555555555555555555555555554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0002 Score=49.87 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIEL----DKN---ESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.+++.++..|...|++++|+..|++++++ .++ -..++..++.+|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677777788888888888888877752 222 24567778888888888888888777664
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.011 Score=56.19 Aligned_cols=117 Identities=15% Similarity=0.065 Sum_probs=63.3
Q ss_pred cCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHH
Q 046039 168 CGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFL 247 (502)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 247 (502)
.|-.+-++++=.++...+..+...+...+.+...+.-|-++|..|-. ...++..+...+++.+|..+.+..
T Consensus 729 ~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 729 HGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred ccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhC
Confidence 33344445555555445555555555556666667777777776642 224555666777777777666554
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046039 248 VTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQS 315 (502)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (502)
.+. . ..+|-...+.++...++++|.+.|. +.|+..+|..+++++..
T Consensus 800 Pe~--~--~dVy~pyaqwLAE~DrFeEAqkAfh------------------kAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 800 PEF--K--DDVYMPYAQWLAENDRFEEAQKAFH------------------KAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ccc--c--ccccchHHHHhhhhhhHHHHHHHHH------------------HhcchHHHHHHHHHhhh
Confidence 332 1 2233333444455555555544433 34555566666555543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.08 Score=47.92 Aligned_cols=110 Identities=22% Similarity=0.278 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRK 402 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 402 (502)
.+.+..+.-|...|+...|.++-.+. ++ |+...|..-+.+|+..++|++-..+... +.++..|...+.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34555566677788888887776555 44 6788888999999999999998887654 3456789999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 046039 403 HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLL 449 (502)
Q Consensus 403 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 449 (502)
.|+..+|..+..++ .+..-...|.+.|++.+|.+.--+
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999988882 125566788999999999875433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.018 Score=52.49 Aligned_cols=170 Identities=19% Similarity=0.144 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC-------CcchHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046039 258 VVTAIIDMYCKCGCPERALQVFNTVPKK-------GLSCWNSMVFGLAM---NGYENEAIKLFSGLQSSNLKPDYISFIA 327 (502)
Q Consensus 258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 327 (502)
+...++-+|....+++..+++++.+... ....-...+-++.+ .|+.++|+.++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3334555566677777777777766553 11122334445555 7888888888888665556677778777
Q ss_pred HHHHHhc---------CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC-HH---HHHHHH---Hh-CCC----
Q 046039 328 VLTACNH---------SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL-LE---EAEKLI---RS-MPS---- 386 (502)
Q Consensus 328 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~-~~~---- 386 (502)
+.+.|-. ....++|+..|.+.-. +.|+...--.++..+...|. ++ +..++- .. +..
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 7766532 1236677777776543 33443222222223333332 22 222221 11 111
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 046039 387 --DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 387 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 430 (502)
..+-..+.+++.++.-.|++++|.+.++++.++.|+....-.++
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~ 345 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTL 345 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHH
Confidence 14555667899999999999999999999999988766443333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.015 Score=49.10 Aligned_cols=136 Identities=10% Similarity=-0.006 Sum_probs=102.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH-----HH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHY-----SC 363 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~ 363 (502)
..+.++..+.-.|.+.-.+..+++.++.....++.....+.+.-.+.|+.+.|..+|+...+. .-+.+.... ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 445667777778889999999999999877778888888999999999999999999977654 222332222 23
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
....|.-.+++.+|...+.+++.. .++...+.-.-+..-.|+...|++.++.+++..|....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 334466778899999999888753 34555566555666678999999999999998887544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0018 Score=57.95 Aligned_cols=153 Identities=12% Similarity=-0.020 Sum_probs=104.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh----hcCCCCChh
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQ----SSNLK-PDYISFIAVLTACNHSGKVNQAKDYFTLMTE----TYKIKPSIK 359 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~ 359 (502)
+|..|...|.-.|+++.|+..-+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+.... ...-.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 66677777777889999887654422 22322 2335677888888899999999999887532 111122345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-------C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-Ccc
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPS-------D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL-----DKN-ESC 425 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~-~~~ 425 (502)
+..+|...|.-..++++|+.++.+-.. . .....+.+|+.++...|..++|+.+.+..++. +|. ..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 566788888888899999998866432 1 34567888999999999999999999888762 232 234
Q ss_pred hHHHHHHHHHhcCCch
Q 046039 426 GYVLMSNLYAASYQFE 441 (502)
Q Consensus 426 ~~~~l~~~~~~~g~~~ 441 (502)
....|...-...|.-+
T Consensus 357 ar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 357 ARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhHHHHHHhCCCc
Confidence 4455555555555543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.036 Score=46.90 Aligned_cols=130 Identities=11% Similarity=0.070 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHH-----H
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTA-----I 262 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 262 (502)
+.+.++.++.-.|.+.-....+++.++...+.++.....+++...+.||.+.|..+|+...+..-..+...++. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44566677777788888888888888876666777778888888888888888888887765443333333333 3
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046039 263 IDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSN 317 (502)
Q Consensus 263 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 317 (502)
...|.-.+++..|...+.++...| +..-|.-.-+..-.|+..+|++.++.|.+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 334555677777888887776643 3344554455555678888888888887753
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.061 Score=52.01 Aligned_cols=73 Identities=10% Similarity=0.043 Sum_probs=32.6
Q ss_pred CChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHH
Q 046039 35 GDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHG 112 (502)
Q Consensus 35 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 112 (502)
|.+++|.+++-.+.+.|. -|....+.|+|-.+.++++.=-.......-...|+.+...++....+++|.+.|.
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665554332 2344445555555555443211100000111234445555555555555544443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0012 Score=58.92 Aligned_cols=129 Identities=12% Similarity=0.081 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH-HHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDA-LGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSA 399 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~ 399 (502)
.+|..++..+.+.+..+.|..+|.+..+.. ..+..+|...+.. |...++.+.|..+|+...+. .+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467778888888888999999999998642 2344455555554 33357777799999998754 477889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 400 CRKHGNIEMAKQAAKQIIELDKNES---CGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 400 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+...|+.+.|..+|++++..-|.+. .+|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998665544 58888888888889999999998888754
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.097 Score=48.09 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=32.4
Q ss_pred HHHHHHHH--HHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046039 360 HYSCMVDA--LGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQ 415 (502)
Q Consensus 360 ~~~~l~~~--~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 415 (502)
.-|.|.++ +...|++.++.-.-.-+.. .|++.+|.-++-++...+++++|..++..
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 44444443 3456777776643222221 36777777777777777777777666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.1 Score=47.91 Aligned_cols=397 Identities=11% Similarity=0.056 Sum_probs=219.7
Q ss_pred CCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCc---chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHH
Q 046039 17 AKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNL---FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPS 93 (502)
Q Consensus 17 ~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 93 (502)
+.|+..|-.|+..+ .-.|..++.+++++++..|-+ .+|..-+++-...+++.....+|.+.+.. . .+...|..
T Consensus 39 PtnI~S~fqLiq~~-~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k-~--l~ldLW~l 114 (660)
T COG5107 39 PTNILSYFQLIQYL-ETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK-S--LNLDLWML 114 (660)
T ss_pred chhHHHHHHHHHHH-hhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-h--ccHhHHHH
Confidence 45577777888877 888888888888888877443 36777777777777888888888888765 3 34445555
Q ss_pred HHHHHHhcCCc------hhHHHHHHHHHH-hCCCC-chhHHHHHHHHHHh---CCC------hhHHHHHHhhcCCCCC--
Q 046039 94 LFKAYAQLGLA------RDGAQLHGRVVK-QGLEF-DQFIHNTIIYMYAN---CGF------LSEARLMFDEVDTEFD-- 154 (502)
Q Consensus 94 l~~~~~~~~~~------~~a~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~---~g~------~~~a~~~~~~~~~~~~-- 154 (502)
-+.--.+.++. ....+.|+-... .++.| ....|+..+..+.. .|. ++.....+.++...|-
T Consensus 115 Yl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~n 194 (660)
T COG5107 115 YLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGN 194 (660)
T ss_pred HHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCcccc
Confidence 55443333211 112233333333 33333 23345544443322 233 3445555555543221
Q ss_pred e-eeHH------HHHHH-----HHh--cCCHHHHHHHHHccCC-------C---Chhh-----------HHHHHHHHHhC
Q 046039 155 V-VAWN------SMIIG-----LAK--CGEIDESRRLFDKMVS-------R---NTVS-----------WNSMISGYVRN 199 (502)
Q Consensus 155 ~-~~~~------~l~~~-----~~~--~~~~~~a~~~~~~~~~-------~---~~~~-----------~~~l~~~~~~~ 199 (502)
. ..|+ .=++- +.. ..-+-.|...++++.. . +..+ |-..|..-...
T Consensus 195 leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en 274 (660)
T COG5107 195 LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMEN 274 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcC
Confidence 0 0111 00000 000 1111223333333210 0 1111 22233221111
Q ss_pred -----CC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 200 -----VK--FKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 200 -----~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
|+ ....--++++.... +.-.+..|----.-+...++-+.|........ +..+...-.+...|.-..+.
T Consensus 275 ~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~----~~spsL~~~lse~yel~nd~ 349 (660)
T COG5107 275 GLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGI----EMSPSLTMFLSEYYELVNDE 349 (660)
T ss_pred CcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc----cCCCchheeHHHHHhhcccH
Confidence 11 12222334443332 23333444333334445566666655544332 22222222233333333333
Q ss_pred HHHHHHHhcCC---------------------------------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-C
Q 046039 273 ERALQVFNTVP---------------------------------KKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSN-L 318 (502)
Q Consensus 273 ~~A~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~ 318 (502)
+....+|++.. ..=..+|...+....+....+.|..+|-+..+.| +
T Consensus 350 e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~ 429 (660)
T COG5107 350 EAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV 429 (660)
T ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC
Confidence 33333333221 0112267778888888888999999999999988 5
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHH
Q 046039 319 KPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD----PDAIIWG 394 (502)
Q Consensus 319 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ 394 (502)
.++...++.++..++ .|+...|..+|+.-... ++.++..-+..+..+.+.++-..|..+|+....+ .-..+|.
T Consensus 430 ~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~ 506 (660)
T COG5107 430 GHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYD 506 (660)
T ss_pred CcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHH
Confidence 677788888887664 57899999999987763 3334444456677778999999999999976543 2256888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
.++.--..-|+...+..+=+++.++-|....
T Consensus 507 kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 507 KMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 8998888999999999999999888887543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.054 Score=45.79 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQNI--KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC 251 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 251 (502)
.-.....+...|++.+|...|+.+...-. +--......++.++.+.|+++.|...++.+++.-
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 33445566778888888888888876521 1223445566777778888888888888877764
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.18 Score=49.37 Aligned_cols=353 Identities=12% Similarity=0.079 Sum_probs=191.2
Q ss_pred HhcCCChHHHHHHHHHhHhc-------CCCCCCcccHH-----HHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHH
Q 046039 62 FSQSSTPRNAILLFIDMLVT-------SPIQPQRLTYP-----SLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTI 129 (502)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~-------~~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 129 (502)
+.+..++++-..+.+.+.-. -|++.+..-|. .++.-+...+.+..|.++-..+...-.. ...+|...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHH
Confidence 34555666665555544321 14444443333 3455556667788888777766332111 15677777
Q ss_pred HHHHHhCCC---hhHHHHHHhhcCCC-CCeeeHHHHHHHHHhcCCHHHHHHHHHccCCC--------ChhhHHHHHHHHH
Q 046039 130 IYMYANCGF---LSEARLMFDEVDTE-FDVVAWNSMIIGLAKCGEIDESRRLFDKMVSR--------NTVSWNSMISGYV 197 (502)
Q Consensus 130 ~~~~~~~g~---~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~ 197 (502)
...+.+..+ -+.+..+=+++..+ ....+|..+.......|+.+.|..+++.-... +..-+...+.-+.
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 777776632 22233333334321 34567778888888889998888888764332 1222334444455
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 046039 198 RNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQ 277 (502)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 277 (502)
++|+.+-...++-.+.+. .+...+...+ .+...|..+|.+..+..-.. .+-..|-. ++...+..
T Consensus 558 es~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~~------~l~d~y~q-~dn~~~~a 621 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLALSLYRQFMRHQDRA------TLYDFYNQ-DDNHQALA 621 (829)
T ss_pred hcCCchhHHHHHHHHHHH---HHHHHHHHHH------HhchhhhHHHHHHHHhhchh------hhhhhhhc-ccchhhhh
Confidence 556655555555554432 1111111111 13334444454444321110 01112222 22222222
Q ss_pred HHh--cC-----CCCCcchHHHHHHHHHhcCC----------hHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhcCCCHH
Q 046039 278 VFN--TV-----PKKGLSCWNSMVFGLAMNGY----------ENEAIKLFSGLQS-SNLKPDYISFIAVLTACNHSGKVN 339 (502)
Q Consensus 278 ~~~--~~-----~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~ 339 (502)
.|. .. ...-..........+.+... ..+-+.+.+.+.. .|......+.+--+.-+...|+..
T Consensus 622 ~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k 701 (829)
T KOG2280|consen 622 SFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNK 701 (829)
T ss_pred hhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchH
Confidence 111 10 00111122233334443332 1122222333322 232333445555666677789999
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046039 340 QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 419 (502)
+|.++-.+++ -|+-..|-.-+.++...+++++-+++-+... ++..|.....+|.+.|+-++|.+.+-+.-.+
T Consensus 702 ~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l 773 (829)
T KOG2280|consen 702 RAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL 773 (829)
T ss_pred HHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh
Confidence 9988877664 3677777777888999999998888776655 3567888889999999999998887765331
Q ss_pred CCCCcchHHHHHHHHHhcCCchHHHHHH
Q 046039 420 DKNESCGYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 420 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
.-...+|.+.|++.+|.++-
T Consensus 774 --------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 774 --------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred --------HHHHHHHHHhccHHHHHHHH
Confidence 25667899999999988753
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.011 Score=45.49 Aligned_cols=90 Identities=20% Similarity=0.170 Sum_probs=66.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHH
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPSD-P----DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC---GYVLMSNLYA 435 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~ 435 (502)
-.....+.|++++|.+.|+.+... | ....-..++.+|.+.+++++|...+++.++++|.++. ++...|.++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 344456788999999998888754 2 3345667889999999999999999999999998775 4555565666
Q ss_pred hcCC---------------chHHHHHHHHhhhc
Q 046039 436 ASYQ---------------FEEAMEERLLMKEV 453 (502)
Q Consensus 436 ~~g~---------------~~~A~~~~~~~~~~ 453 (502)
++.. ..+|..-|+.+.+.
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 6554 55666666666544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.018 Score=49.97 Aligned_cols=105 Identities=16% Similarity=0.094 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHhCCC-CC-CHHHH
Q 046039 319 KPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRA---GLLEEAEKLIRSMPS-DP-DAIIW 393 (502)
Q Consensus 319 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~-~~-~~~~~ 393 (502)
+-|...|..|..+|...|+++.|..-|....+.. ++++..+..+..++... .+..++..+|+++.. +| ++...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 3477899999999999999999999999988743 44566666666665533 246788899998875 34 67788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
..|...+...|++.+|...|+.|++..|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 88899999999999999999999998876554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0063 Score=50.07 Aligned_cols=97 Identities=8% Similarity=0.114 Sum_probs=76.1
Q ss_pred HHHHHcc--CCCChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------
Q 046039 175 RRLFDKM--VSRNTVSWNSMISGYVR-----NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG------------ 235 (502)
Q Consensus 175 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------------ 235 (502)
...|+.. ...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444554 45677777777777764 4677888888899999999999999999998875421
Q ss_pred ----chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 046039 236 ----AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGC 271 (502)
Q Consensus 236 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 271 (502)
+-+-|.+++++|...|+-||..++..+++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 456789999999999999999999999998866554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0064 Score=54.79 Aligned_cols=95 Identities=11% Similarity=0.018 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA 436 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 436 (502)
.++..+..+|.+.+++.+|++..++... ++++.....=+.+|...|+++.|+..|+++++++|+|..+...|..+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4567788899999999999999988764 36788888889999999999999999999999999999999999988777
Q ss_pred cCCchHH-HHHHHHhhhc
Q 046039 437 SYQFEEA-MEERLLMKEV 453 (502)
Q Consensus 437 ~g~~~~A-~~~~~~~~~~ 453 (502)
.....+. .++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7666555 5688888654
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.39 Score=48.26 Aligned_cols=125 Identities=10% Similarity=0.008 Sum_probs=68.9
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 046039 300 NGYENEAIKLFSGLQSSN-LKPDY--ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEE 376 (502)
Q Consensus 300 ~g~~~~a~~~~~~~~~~~-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 376 (502)
..+.+.|..++....... ..+.. .....+.......+..+++..+++..... ..+......-+....+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 445677777777764432 22222 22333333333332255666666654422 2244445555555567888888
Q ss_pred HHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 377 AEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 377 A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
+...+..|... -...-..=++.++...|+.++|...|+++.. + .++|-.|+
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 88888777642 1222222356666667888888888888733 2 24555554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.21 Score=45.04 Aligned_cols=246 Identities=13% Similarity=0.099 Sum_probs=115.9
Q ss_pred CCChhHHHHHHhhcCCCCCeee--HHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhhHHHHHHHHHhCCChHHHHHHHH
Q 046039 136 CGFLSEARLMFDEVDTEFDVVA--WNSMIIGLAKCGEIDESRRLFDKMVS--R-NTVSWNSMISGYVRNVKFKEALELFR 210 (502)
Q Consensus 136 ~g~~~~a~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 210 (502)
.|+++.|.+-|+.|...|.... ...|.-...+.|+.+.|.+.-+..-. | -...+...+...+..|+|+.|+++++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 4566666666665554333322 22223333445555555555544422 1 23345556666666666666666666
Q ss_pred HHHHCC-CCCCHHH--HHHHHHHH--h-ccCchHHHHHHHHHHHHcCCCCchhH-HHHHHHHHHhcCChHHHHHHHhcCC
Q 046039 211 EMQEQN-IKPSEFT--MVSLLNAC--A-KLGAIRQGEWIHNFLVTNCFELNTIV-VTAIIDMYCKCGCPERALQVFNTVP 283 (502)
Q Consensus 211 ~m~~~~-~~~~~~~--~~~ll~~~--~-~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~ 283 (502)
.-+... +.++..- -..|+.+- . -..+...|...-.+..+. .|+..- .-.-..++.+.|+..++-.+++.+=
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 544322 2233211 11122111 1 112344444444444332 222111 1122345566666666666666554
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH
Q 046039 284 KKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS-NLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHY 361 (502)
Q Consensus 284 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (502)
+..+..--..+-.+.+.|+ .++.-+++.... .++| +..+...+..+....|++..|..--+... ...|....|
T Consensus 291 K~ePHP~ia~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~ 365 (531)
T COG3898 291 KAEPHPDIALLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAY 365 (531)
T ss_pred hcCCChHHHHHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHH
Confidence 4333222222222333333 233333322211 1233 33555566666667777777766655554 345666666
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHhCCCCC
Q 046039 362 SCMVDALG-RAGLLEEAEKLIRSMPSDP 388 (502)
Q Consensus 362 ~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 388 (502)
..|.+.-. ..||-.++..++-+....|
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 66666544 3477777777776665433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.22 Score=44.92 Aligned_cols=276 Identities=15% Similarity=0.096 Sum_probs=154.5
Q ss_pred CCChhHHHHHHhhcCC--CCCeeeHHHHHH--HHHhcCCHHHHHHHHHccCC-CChh--hHHHHHHHHHhCCChHHHHHH
Q 046039 136 CGFLSEARLMFDEVDT--EFDVVAWNSMII--GLAKCGEIDESRRLFDKMVS-RNTV--SWNSMISGYVRNVKFKEALEL 208 (502)
Q Consensus 136 ~g~~~~a~~~~~~~~~--~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~a~~~ 208 (502)
.||-..|.++-.+..+ ..|......++. +-.-.|+.+.|.+-|+.|.. |... -...|.-...+.|..+.|..+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 4566666665544332 233333333332 33447888888888888865 2211 123333344567788888877
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC-CCCchhH--HHHHHHHHHh---cCChHHHHHHHhcC
Q 046039 209 FREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC-FELNTIV--VTAIIDMYCK---CGCPERALQVFNTV 282 (502)
Q Consensus 209 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~~---~g~~~~A~~~~~~~ 282 (502)
-+..-..- +--.......+...+..|+++.|+++.+.-.... +.++..- -..|+.+-.. ..+...|...-.+.
T Consensus 177 Ae~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a 255 (531)
T COG3898 177 AERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA 255 (531)
T ss_pred HHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 77765542 3345667777888888888888888887666543 2333221 1122222111 12344444444433
Q ss_pred CC--CCcc-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-h
Q 046039 283 PK--KGLS-CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-I 358 (502)
Q Consensus 283 ~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 358 (502)
.+ ++.. .--.-..++.+.|+..++-.+++.+-+....|+.. .. ....+.|+. +..-++...+--.++|| .
T Consensus 256 ~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nna 329 (531)
T COG3898 256 NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--LL--YVRARSGDT--ALDRLKRAKKLESLKPNNA 329 (531)
T ss_pred hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--HH--HHHhcCCCc--HHHHHHHHHHHHhcCccch
Confidence 33 2322 33344567788888888888888888765444432 21 123344442 22223333222233443 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRKH-GNIEMAKQAAKQIIE 418 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~ 418 (502)
.....+..+-...|++..|..--+.... .|....|..|...-... |+-.++.+.+.+.++
T Consensus 330 es~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 330 ESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 5555566677777888777766555543 37777777666655444 888888888888776
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.001 Score=46.27 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS--------DPD-AIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 419 (502)
..+++.+...|...|++++|+..|++... .|+ ..++..++.++...|++++|++.+++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34567777777788888887777766542 132 457788888888999999999998888763
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0035 Score=49.85 Aligned_cols=68 Identities=24% Similarity=0.243 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh-----cCCccCC
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE-----VKIEKEP 459 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 459 (502)
....++..+...|++++|...+++++..+|-+..++..++.+|...|+..+|.++++++.+ .|+.|+|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 5566778888999999999999999999999999999999999999999999999988753 4666543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0094 Score=51.00 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=42.0
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHH
Q 046039 334 HSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD----P-DAIIWGSLLSACRKHGNIE 407 (502)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~ 407 (502)
+.|++..|.+-|...++.+.-.+ ....+..|..++...|++++|..+|..+... | -+..+.-|+.+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34455555555555554321100 1222333555555555555555555444321 1 2234444555555555555
Q ss_pred HHHHHHHHHHhcCCCCc
Q 046039 408 MAKQAAKQIIELDKNES 424 (502)
Q Consensus 408 ~A~~~~~~~~~~~p~~~ 424 (502)
+|...|+++.+.-|+.+
T Consensus 233 ~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 233 EACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHHCCCCH
Confidence 55555555555555544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0046 Score=50.86 Aligned_cols=99 Identities=9% Similarity=0.081 Sum_probs=78.5
Q ss_pred HHHHHhccC--CCCCcchHHHHHHHHhcC-----CChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhc----------
Q 046039 39 YAYLVFTQI--KKPNLFIWNTIIRGFSQS-----STPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQL---------- 101 (502)
Q Consensus 39 ~A~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---------- 101 (502)
.-...|+.. ...|-.+|..++..+.+. |..+-....+..|.+- |+.-|..+|+.|++.+=+.
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~ef-gv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~ 110 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEF-GVEKDLEVYKALLDVFPKGKFVPRNFFQA 110 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHc-CCcccHHHHHHHHHhCCCCCcccccHHHH
Confidence 334566665 347888888888888643 6777778888888887 9999999999999987542
Q ss_pred ------CCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 046039 102 ------GLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGF 138 (502)
Q Consensus 102 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 138 (502)
.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1346689999999999999999999999999876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.24 Score=42.28 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELDKNES---CGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.++..|.+.|.+..|..-++++++.-|+.. ..+..+..+|...|..++|.+.-+-+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 356778999999999999999999766644 456777788999999999988755553
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.59 Score=46.67 Aligned_cols=174 Identities=11% Similarity=0.045 Sum_probs=118.2
Q ss_pred HHHHhhhCCCCChhHHHHHhccCCCCCcch----HHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHh
Q 046039 25 RILAFCTSPAGDINYAYLVFTQIKKPNLFI----WNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQ 100 (502)
Q Consensus 25 ~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 100 (502)
.-|... .+..-++.|..+-+.-.- +... .......+.+.|++++|..-|-+-... +.| ..++.-+..
T Consensus 339 ~kL~iL-~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 339 TKLDIL-FKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHH-HHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHHHHHhcC
Confidence 344444 455667777777665432 2222 223344567789999999888776632 333 355666777
Q ss_pred cCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHc
Q 046039 101 LGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDK 180 (502)
Q Consensus 101 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 180 (502)
..+...--.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+......-..-....+..+.+.+-.++|..+-.+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 77778888889999998865 56666789999999999999999888766222233466777778888888888777666
Q ss_pred cCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 046039 181 MVSRNTVSWNSMISGYVRNVKFKEALELFREM 212 (502)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 212 (502)
... +...... .+-..+++++|++++..+
T Consensus 489 ~~~-he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 544 3333333 344578899999998876
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0028 Score=35.49 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
.+|..++.+|...|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888999999999999999999999999863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.52 Score=45.23 Aligned_cols=393 Identities=12% Similarity=0.110 Sum_probs=221.9
Q ss_pred HHHHHhccCCC--CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcc-cHHHHHHHHHhcCCchhHHHHHHHHH
Q 046039 39 YAYLVFTQIKK--PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRL-TYPSLFKAYAQLGLARDGAQLHGRVV 115 (502)
Q Consensus 39 ~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 115 (502)
+-.+.++.... -+...|..+|.---.....+.+..++..++.+ -|... -|......=.+.|..+.+.++|++.+
T Consensus 30 ~~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv 106 (577)
T KOG1258|consen 30 DSLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGV 106 (577)
T ss_pred chhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33455555443 44556666665554555556677777777744 34433 34444444466777788888888777
Q ss_pred HhCCCCchhHHHHHHHHHH-hCCChhHHHHHHhhcCC-----CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhH
Q 046039 116 KQGLEFDQFIHNTIIYMYA-NCGFLSEARLMFDEVDT-----EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSW 189 (502)
Q Consensus 116 ~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 189 (502)
.. ++.+...|......+. ..|+.+.....|+.... =.+...|...+..-...+++.....+++++++-....|
T Consensus 107 ~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~ 185 (577)
T KOG1258|consen 107 QA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQL 185 (577)
T ss_pred Hh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHh
Confidence 64 5666666665555443 34666666666666543 13455677777777777778888888877765433333
Q ss_pred HHHHHHHHh---C------CChHHHHHHHHHHH--------------------HCCCCCCHH--HHHHHHHHH-------
Q 046039 190 NSMISGYVR---N------VKFKEALELFREMQ--------------------EQNIKPSEF--TMVSLLNAC------- 231 (502)
Q Consensus 190 ~~l~~~~~~---~------~~~~~a~~~~~~m~--------------------~~~~~~~~~--~~~~ll~~~------- 231 (502)
+..-.-|.+ + ...+++.++-.... ..+-+.+.. ..+.+...+
T Consensus 186 ~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~ 265 (577)
T KOG1258|consen 186 NRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVY 265 (577)
T ss_pred HHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHH
Confidence 333222211 1 11222222221111 111000000 011111111
Q ss_pred hccCchHHHHHHHHHHHHcC---C----CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcC
Q 046039 232 AKLGAIRQGEWIHNFLVTNC---F----ELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMVFGLAMNG 301 (502)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g 301 (502)
............++.-+..- + .++..++...+..-...|+.+.+.-.|+...-+- ...|-..+.-....|
T Consensus 266 ~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~ 345 (577)
T KOG1258|consen 266 QKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSG 345 (577)
T ss_pred HhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcC
Confidence 11111112222222222211 1 1245667777777888999999999998876542 235666666666668
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHHHhcCCHHHHH--
Q 046039 302 YENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSI-KHYSCMVDALGRAGLLEEAE-- 378 (502)
Q Consensus 302 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~-- 378 (502)
+.+-|..++....+-.++-.+.+-..-..-+...|++..|..+++.+... . |+. ..-..-+....+.|..+.+.
T Consensus 346 ~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~ 422 (577)
T KOG1258|consen 346 DVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYK 422 (577)
T ss_pred chhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHH
Confidence 88888877776665433323322222222345568999999999999874 3 553 22223344556888888888
Q ss_pred -HHHHhCCC-CCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046039 379 -KLIRSMPS-DPDAIIWGSLLS-----ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASY 438 (502)
Q Consensus 379 -~~~~~~~~-~~~~~~~~~l~~-----~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 438 (502)
+++..... +.+..+...+.. .+.-.++.+.|..++.++.+..|++..+|..+.......+
T Consensus 423 ~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 423 NELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 55544432 122223222222 2334678999999999999999999999998888766655
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0046 Score=34.58 Aligned_cols=33 Identities=33% Similarity=0.347 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
..|..++.++...|++++|++.|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888899999999999999999988875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.17 Score=48.92 Aligned_cols=116 Identities=15% Similarity=0.031 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHhCCCC----C--CHHHHHHHHHHHHhcCCHH
Q 046039 335 SGKVNQAKDYFTLMTETYKIKPSIKHYS-CMVDALGRAGLLEEAEKLIRSMPSD----P--DAIIWGSLLSACRKHGNIE 407 (502)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~ 407 (502)
....+.|.++++.+.+++ |+...|. .-.+.+...|++++|++.|++.... + ....+--++.++.-..+|+
T Consensus 246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 457889999999998753 5655554 3356677889999999999976541 2 3335556788889999999
Q ss_pred HHHHHHHHHHhcCCCCcc-hHHHHHHHHHhcCCc-------hHHHHHHHHhhhc
Q 046039 408 MAKQAAKQIIELDKNESC-GYVLMSNLYAASYQF-------EEAMEERLLMKEV 453 (502)
Q Consensus 408 ~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~ 453 (502)
+|.+.|.++.+...-+.. .++..+.++...|+. ++|.++++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999999987665444 445555667778988 8888888887643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.11 Score=45.11 Aligned_cols=120 Identities=10% Similarity=0.093 Sum_probs=76.5
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHH
Q 046039 331 ACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGS---LLSACRKHGNIE 407 (502)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~ 407 (502)
.....|++..|...|+..... .+-+...--.++.+|...|+.+.|..++..++.+-...-+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345667888888888877763 233345556677888888888888888888876532222222 233333333333
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 408 MAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 408 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+... +++-...+|++...-..++..+...|+.++|.+.+=.+.++
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3222 23334568888888888888888888888888765555444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.016 Score=53.70 Aligned_cols=97 Identities=9% Similarity=-0.039 Sum_probs=62.9
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 046039 356 PSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDA----IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 430 (502)
.+...++.+..+|.+.|++++|+..|++... +|+. ..|..+..+|...|+.++|++.+++++++.+. .+..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHH
Confidence 3466778888888888888888888887654 4653 35888888888888888888888888886321 11111
Q ss_pred HH--HHHhcCCchHHHHHHHHhhhcCC
Q 046039 431 SN--LYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 431 ~~--~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
.. .+....+..+..++++.+.+.|.
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 10 11122333455556666666554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.045 Score=50.88 Aligned_cols=62 Identities=13% Similarity=-0.060 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
|+.....++.+..-.++++.|...|+++..++|+.+..+...+.++.-.|+.++|.+.+++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444444455555555555555555555555555555555555555555555553
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.036 Score=47.56 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHH
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPSD-------PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE---SCGYVL 429 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~ 429 (502)
.|+.-+.. .+.|++..|...|...... |+...| |+.++...|++++|..+|..+.+..|++ |..+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 55554443 4677788888888776543 333333 8888888888888888888888866554 456788
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 430 MSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
|+.+..+.|+.++|...++++.+.-+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 888888888888888888888766543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.11 Score=39.01 Aligned_cols=141 Identities=10% Similarity=0.074 Sum_probs=86.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 046039 297 LAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEE 376 (502)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 376 (502)
+.-.|..++..++..+...+ .+..-++.++--....-+-+-..++++.+-+-+.+.+-. ....++.+|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc---
Confidence 34567778888887777663 255566666655555556666666666665543333322 12334455554443
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 377 AEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 377 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
+.......+..+..+|+-+.-.+++..+.+.+..+|.+...++.+|.+.|+..++.++++++-++|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 23344556677788999999999999988767778999999999999999999999999999999875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.055 Score=42.77 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=35.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 046039 299 MNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAE 378 (502)
Q Consensus 299 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 378 (502)
..|++++|..+|+-+...++. +..-+..|..++-..+++++|+..|........ -|+..+-....+|...|+.+.|.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHHHHHHHhCCHHHHH
Confidence 344444444444444433221 233334444444444555555555444332211 11112222444444555555555
Q ss_pred HHHHhCCC
Q 046039 379 KLIRSMPS 386 (502)
Q Consensus 379 ~~~~~~~~ 386 (502)
.-|+....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 54444443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.35 Score=42.15 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=101.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCH
Q 046039 295 FGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLL 374 (502)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 374 (502)
......|++.+|..+|+........ +...-..++.++...|+.+.|..++..+-.. .-.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 3456678888888888888776433 4456667888888999999999998887542 1111111122234455555555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCchHHHH
Q 046039 375 EEAEKLIRSMPSDP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELD--KNESCGYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 375 ~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~ 445 (502)
.+...+-.+....| |...-..+...+...|+.+.|.+.+=.+++.+ -.+...-..|..++.-.|.-+.+..
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence 55555555555566 66677778888999999999999888888744 5567778888888888886665544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.72 Score=42.66 Aligned_cols=408 Identities=13% Similarity=0.078 Sum_probs=228.4
Q ss_pred HHHHhccCCC--CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHh
Q 046039 40 AYLVFTQIKK--PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQ 117 (502)
Q Consensus 40 A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 117 (502)
-+++=+++.+ .|..+|-.|+.-+..++..++..+++++|.. ..+--...|..-+.+-...+++..+..+|.+.+..
T Consensus 28 ~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~--pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 28 ELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSS--PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC--CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 3366667765 5677999999999999999999999999986 34445567888888777788999999999999886
Q ss_pred CCCCchhHHHHHHHHHHhCCC---------hhHHHHHHhh-cC-CCCCeeeHHHHHHHHH---h------cCCHHHHHHH
Q 046039 118 GLEFDQFIHNTIIYMYANCGF---------LSEARLMFDE-VD-TEFDVVAWNSMIIGLA---K------CGEIDESRRL 177 (502)
Q Consensus 118 ~~~~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~-~~-~~~~~~~~~~l~~~~~---~------~~~~~~a~~~ 177 (502)
.+ +...|...+.--.+.+. +-+|.++.-. +. .+.+...|+..+..+- . ..+++...+.
T Consensus 106 ~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 SL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred hc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 44 46666666654444331 1122222211 11 1234445655544322 2 3344555566
Q ss_pred HHccCC-C---------ChhhHHHHHHHH-----Hh--CCChHHHHHHHHHHHH--CCC----CCCHHHHHHHHH-----
Q 046039 178 FDKMVS-R---------NTVSWNSMISGY-----VR--NVKFKEALELFREMQE--QNI----KPSEFTMVSLLN----- 229 (502)
Q Consensus 178 ~~~~~~-~---------~~~~~~~l~~~~-----~~--~~~~~~a~~~~~~m~~--~~~----~~~~~~~~~ll~----- 229 (502)
+.+++. | +-..|..=++-. .. .--+-.|...+++... .|+ +.+..+++-..+
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 666643 1 111111111111 10 1113455555655533 222 223333332211
Q ss_pred ------HHhcc-----Cc--hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHH
Q 046039 230 ------ACAKL-----GA--IRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFG 296 (502)
Q Consensus 230 ------~~~~~-----~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 296 (502)
--... |+ .....-++++.... +...+.+|----..+...++-+.|+.......+..+..-..+...
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~ 342 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEY 342 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHH
Confidence 10000 00 11112222332222 122333333333344556777888887776554322211111111
Q ss_pred HHhc-------CChHHHHHHHHHHHH-------CCC---------------CCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 046039 297 LAMN-------GYENEAIKLFSGLQS-------SNL---------------KPDYISFIAVLTACNHSGKVNQAKDYFTL 347 (502)
Q Consensus 297 ~~~~-------g~~~~a~~~~~~~~~-------~~~---------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 347 (502)
|... |.++...+.+.+-.. .+. .--...|...+.+..+..-.+.|..+|-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1111 112222211111000 001 01124566677777777888999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C
Q 046039 348 MTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PDAIIW-GSLLSACRKHGNIEMAKQAAKQIIELDKN--E 423 (502)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~ 423 (502)
..+..-+.+++..+++++..++ .|+..-|..+|+--... ||...| .-.+..+...++-+.|..+|+..++.-.+ -
T Consensus 423 ~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~ 501 (660)
T COG5107 423 LRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQL 501 (660)
T ss_pred HhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhh
Confidence 9887336788888999888664 78899999999875543 666655 45667778899999999999987763222 2
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 424 SCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 424 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
..+|..++.--..-|+...+..+-+.+.+.
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 457777877666778887777766666543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.51 Score=40.69 Aligned_cols=220 Identities=18% Similarity=0.080 Sum_probs=122.0
Q ss_pred ChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCchHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCChHHHHHH
Q 046039 201 KFKEALELFREMQEQNIK-PSEFTMVSLLNACAKLGAIRQGEWIHNFLVTN-CFELNTIVVTAIIDMYCKCGCPERALQV 278 (502)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 278 (502)
....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444433211 12344445555555556666555555555432 2233344444555555555566666666
Q ss_pred HhcCCCCCc---chHHHHHH-HHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc
Q 046039 279 FNTVPKKGL---SCWNSMVF-GLAMNGYENEAIKLFSGLQSSNL--KPDYISFIAVLTACNHSGKVNQAKDYFTLMTETY 352 (502)
Q Consensus 279 ~~~~~~~~~---~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 352 (502)
+......+. ........ .+...|+++.+...+.+...... ......+......+...++.+.+...+......
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~- 196 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL- 196 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-
Confidence 655544211 12222223 56677777777777777754221 112233333333455667788888887777653
Q ss_pred CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 353 KIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PD-AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 353 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
.+. ....+..+...+...++++.|...+...... |+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus 197 -~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 -NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 233 3556666777777777778887777766543 33 344555555555666788888888888877776
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.97 Score=43.48 Aligned_cols=340 Identities=11% Similarity=0.006 Sum_probs=174.9
Q ss_pred CcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHH
Q 046039 87 QRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIG 164 (502)
Q Consensus 87 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~ 164 (502)
+...+..++.---.....+.+..+++.++.. .|.--..|......=.+.|..+.+.++|++... +.++..|...+..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3445556665444444556677777777754 344445566666667788999999999998765 4455666666654
Q ss_pred HH-hcCCHHHHHHHHHccCC------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----
Q 046039 165 LA-KCGEIDESRRLFDKMVS------RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK---- 233 (502)
Q Consensus 165 ~~-~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---- 233 (502)
+. ..|+.+...+.|+.... .+...|...+..-..++++.....+++..++....-=...|.........
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 44 46777778888887744 24556888888888889999999999998864211111111111111111
Q ss_pred -cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-ChHHHHHHHhcCCCCCcc---hHHHH-------HHHHHhcC
Q 046039 234 -LGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCG-CPERALQVFNTVPKKGLS---CWNSM-------VFGLAMNG 301 (502)
Q Consensus 234 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~---~~~~l-------~~~~~~~g 301 (502)
....+.+.++-....... .-...+ ..+.-....+....+... ..+.+ -..+...-
T Consensus 203 ~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~ 269 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERS-------------KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSE 269 (577)
T ss_pred hhcCHHHHHHHhhhHHhhh-------------hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhH
Confidence 112222222221111100 000000 011111111111111100 00011 11111222
Q ss_pred ChHHHHHHHHHHHHCC---CC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCH
Q 046039 302 YENEAIKLFSGLQSSN---LK----PDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLL 374 (502)
Q Consensus 302 ~~~~a~~~~~~~~~~~---~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 374 (502)
........|+.-+... ++ ++..+|...+.--...|+.+...-+|+...- .+..-...|-..+.-....|+.
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~ 347 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDV 347 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCch
Confidence 2223333333333221 11 2335566666666667777777777776643 2222334444445545555777
Q ss_pred HHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 046039 375 EEAEKLIRSMPS-----DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAM 444 (502)
Q Consensus 375 ~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 444 (502)
+-|..++..... .|....+.+. .+-..|+++.|..++++..+--|....+-..-+....+.|..+.+.
T Consensus 348 ~~~~~~~~~~~~i~~k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 348 SLANNVLARACKIHVKKTPIIHLLEAR--FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hHHHHHHHhhhhhcCCCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 777766655432 1222222222 2334567777777777777644766666556666666777777766
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.055 Score=41.24 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=68.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046039 255 NTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH 334 (502)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 334 (502)
|..++.+++.++++.|+.+....+++..=.-++.. -...+. --......|+..++.+++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc---------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 34567777778888888877777776543221110 000000 11223467899999999999999
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 046039 335 SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALG 369 (502)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (502)
.|++..|.++++.+.+.++++.+..+|..|+.-..
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998888888888886443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.37 E-value=2.5 Score=47.73 Aligned_cols=312 Identities=11% Similarity=0.039 Sum_probs=178.9
Q ss_pred HHHHHHHhCCChhHHHHHHhhcCC----CC-CeeeHHHHHHHHHhcCCHHHHHHHHHc-cCCCChhhHHHHHHHHHhCCC
Q 046039 128 TIIYMYANCGFLSEARLMFDEVDT----EF-DVVAWNSMIIGLAKCGEIDESRRLFDK-MVSRNTVSWNSMISGYVRNVK 201 (502)
Q Consensus 128 ~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 201 (502)
.+..+-.+++.+.+|...++.-.. .. ....+..+...|+..++++....+... ...++ ...-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 445566678889999988887311 11 222344455589999999888777763 33332 2334556677899
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 046039 202 FKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNT 281 (502)
Q Consensus 202 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 281 (502)
++.|...|+.+.+.+ ++...+++-++......|.++......+-.....-+.....++.=+.+--+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 999999999999876 556788888888888888888877755555443322122223333455578888888887776
Q ss_pred CCCCCcchHHHH--HHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHh---------
Q 046039 282 VPKKGLSCWNSM--VFGLAMNG--YENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLM--------- 348 (502)
Q Consensus 282 ~~~~~~~~~~~l--~~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------- 348 (502)
..+...|... +....+.. +.-.-.+..+.+++.-+.| +.+|...|.+..+.++.-.+
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544 33333222 1111112333333221111 11222222222221111111
Q ss_pred -hhhcCCCCCh------hHHHHHH---HHHHhcCCHHHHHH-HHHh--CC---CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 046039 349 -TETYKIKPSI------KHYSCMV---DALGRAGLLEEAEK-LIRS--MP---SDPDAIIWGSLLSACRKHGNIEMAKQA 412 (502)
Q Consensus 349 -~~~~~~~~~~------~~~~~l~---~~~~~~g~~~~A~~-~~~~--~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~ 412 (502)
....+..++. ..|..-+ ..+.+...+=-|.+ .+.. |. ...-..+|..........|+++.|...
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 0111222221 1121111 11112111111111 1111 11 113456899999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 413 AKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 413 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
+-.+.+..+ +.++.-.+..++..|+...|+.++++-.+.+..
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 988888774 556788888999999999999999998876553
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.12 Score=39.88 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=58.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc
Q 046039 294 VFGLAMNGYENEAIKLFSGLQSSNLK--PDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRA 371 (502)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (502)
.....+.|++++|.+.|+.+...-+. -....-..++.++.+.++++.|...+++.++.+...|++ -|...+.+++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 34445566666666666666654211 122344555566666666666666666666554444432 222333333322
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 372 GLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
...+..+.-+- ..+.| .+....|..-|+++++..|++..
T Consensus 96 ~~~~~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHhhhHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCChh
Confidence 22221111111 11111 12356888899999999998764
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.59 Score=40.25 Aligned_cols=219 Identities=18% Similarity=0.108 Sum_probs=158.8
Q ss_pred CchHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCcchHHHHHHHHHhcCChHHHHH
Q 046039 235 GAIRQGEWIHNFLVTNCFE-LNTIVVTAIIDMYCKCGCPERALQVFNTVPK-----KGLSCWNSMVFGLAMNGYENEAIK 308 (502)
Q Consensus 235 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~ 308 (502)
+....+...+......... ............+...+++..+...+..... .....+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555554322 1356677778888899999998888877653 234467777778888889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHhcCCCHHHHHHHHHHhhhhcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 309 LFSGLQSSNLKPDYISFIAVLT-ACNHSGKVNQAKDYFTLMTETYKI--KPSIKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 309 ~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
.+.........+. ........ ++...|+++.+...+...... .. ......+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999987644432 22222223 688899999999999998542 21 1233444444555678899999999998876
Q ss_pred CC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 386 SD-PD--AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 386 ~~-~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
.. ++ ...+..+...+...++++.|...+..+....|.....+..++..+...|..+++...+........
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 53 33 577888999999999999999999999999998666777777777777889999988888776543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.015 Score=46.96 Aligned_cols=88 Identities=23% Similarity=0.228 Sum_probs=57.2
Q ss_pred HHhcCCHHHHHHHHHhCCCC-C------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 046039 368 LGRAGLLEEAEKLIRSMPSD-P------DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQF 440 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~-~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 440 (502)
+...|++++|..-|..+... | ....|..-..++.+.+.++.|+.-..++++++|....+....+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44566666666665554321 1 1224455556667777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHhhhcCC
Q 046039 441 EEAMEERLLMKEVKI 455 (502)
Q Consensus 441 ~~A~~~~~~~~~~~~ 455 (502)
++|++-++.+.+..+
T Consensus 185 eealeDyKki~E~dP 199 (271)
T KOG4234|consen 185 EEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHhCc
Confidence 777777777765543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.059 Score=42.79 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-----cCCCCchhHHH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVT-----NCFELNTIVVT 260 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 260 (502)
+...++..+...|++++|..+++.+.... |.+...|..+|.++...|+...|..+|+.+.+ .|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34456666777888888888888888775 66788888888888888888888888877653 47777665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.34 Score=43.30 Aligned_cols=94 Identities=11% Similarity=0.070 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHhccCchHHHHHHHHHHHHcC-----CCCchhH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQ-NIKP---SEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC-----FELNTIV 258 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 258 (502)
+|..+.+++-+..++.+++.+-+.-... |..| .......+..++...+.++++.+.|+...+.. ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444445555555555555554443322 1111 11233345556666667777777766655421 1123455
Q ss_pred HHHHHHHHHhcCChHHHHHHHhc
Q 046039 259 VTAIIDMYCKCGCPERALQVFNT 281 (502)
Q Consensus 259 ~~~l~~~~~~~g~~~~A~~~~~~ 281 (502)
+..|...|.+..++++|.-+..+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~k 187 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCK 187 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHh
Confidence 66677777777777766554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.7 Score=39.57 Aligned_cols=180 Identities=15% Similarity=0.045 Sum_probs=101.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhcCCCCCC-cccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046039 57 TIIRGFSQSSTPRNAILLFIDMLVTSPIQPQ-RLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYAN 135 (502)
Q Consensus 57 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (502)
.-+....+.|++++|.+.|+.+..+....|= ..+...++.++-+.++++.|+...++..+.-+.....-|...|.+++.
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~ 118 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY 118 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Confidence 3344456789999999999999876333332 224455566677889999999999998886544344455555555553
Q ss_pred C-------CChhHHHHHHhhcC---C-CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHH
Q 046039 136 C-------GFLSEARLMFDEVD---T-EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKE 204 (502)
Q Consensus 136 ~-------g~~~~a~~~~~~~~---~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 204 (502)
. .|...+.+.|..+. . =||.. -...|..-...+...=...=..+.+.|.+.|.+-.
T Consensus 119 ~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-------------Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 119 FFQIDDVTRDQSAARAAFAAFKELVQRYPNSR-------------YAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred hccCCccccCHHHHHHHHHHHHHHHHHCCCCc-------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 2 22223333333222 1 01111 00111111100000000111245677888888888
Q ss_pred HHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCchHHHHHHHHHHHHc
Q 046039 205 ALELFREMQEQNIKPS---EFTMVSLLNACAKLGAIRQGEWIHNFLVTN 250 (502)
Q Consensus 205 a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 250 (502)
|..-++.|++. .+-+ ...+-.+..+|...|-.++|...-.-+...
T Consensus 186 A~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 186 AINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 88888888876 2333 234555667777788777777766555544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.17 E-value=1.1 Score=41.72 Aligned_cols=148 Identities=11% Similarity=0.002 Sum_probs=82.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC--hhHH
Q 046039 287 LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP---DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS--IKHY 361 (502)
Q Consensus 287 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 361 (502)
..+|..++..+.+.|+++.|...+.++...+..+ .+.....-+......|+..+|+..++..... .+... ....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~~ 224 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhhccccccH
Confidence 4467777888888888888888888877643211 3344444556666778888888888777662 11111 1111
Q ss_pred HHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 362 SCMVDALGRAGLLEEAEKL-IRSMPSDPDAIIWGSLLSACRKH------GNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
..+...+.. ..+..... ........-...+..++..+... ++.+++...|..+.+..|.....+..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111000 00000000 00000001122344444444444 7889999999999999999888888888776
Q ss_pred Hhc
Q 046039 435 AAS 437 (502)
Q Consensus 435 ~~~ 437 (502)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.069 Score=46.97 Aligned_cols=161 Identities=17% Similarity=0.094 Sum_probs=111.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHH----HHHHHHhcC
Q 046039 297 LAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSC----MVDALGRAG 372 (502)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g 372 (502)
...+|+..+|-..++++.+. .+.|...+...=.+|...|+...-...++++.. ...++...|.. +.-++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34578888888888888876 445777777777888888998888888888875 33455544433 334455889
Q ss_pred CHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCCchHHHHH
Q 046039 373 LLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN----ESCGYVLMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 373 ~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~ 446 (502)
-+++|++.-++..+- .|...-.++...+...|++.++.++..+--..=.. -..-|...+.++...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999988887642 45555667777788889999998887765431111 112344555567778899999999
Q ss_pred HHHhhhcCCccCCc
Q 046039 447 RLLMKEVKIEKEPG 460 (502)
Q Consensus 447 ~~~~~~~~~~~~~~ 460 (502)
|+.=.-...+++.+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 87765454544433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.066 Score=40.03 Aligned_cols=90 Identities=21% Similarity=0.143 Sum_probs=64.4
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCc---chHHHHHHHHHhcCC
Q 046039 366 DALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDK-NES---CGYVLMSNLYAASYQ 439 (502)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~---~~~~~l~~~~~~~g~ 439 (502)
-++...|+++.|++.|.+... ...+..|+.-..++.-+|+.++|+.-+++++++.. ... ..+...+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345677888888888877653 23566788888888888888888888888887543 322 246666777888888
Q ss_pred chHHHHHHHHhhhcCC
Q 046039 440 FEEAMEERLLMKEVKI 455 (502)
Q Consensus 440 ~~~A~~~~~~~~~~~~ 455 (502)
-+.|..-|...-+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888887777766654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.012 Score=35.19 Aligned_cols=32 Identities=13% Similarity=0.035 Sum_probs=27.7
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 424 SCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 424 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
|..+..++.+|.+.|++++|+++++++.+..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35788999999999999999999999986543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.46 Score=40.10 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 046039 55 WNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYA 134 (502)
Q Consensus 55 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 134 (502)
|..-..+|...+++++|...+.+..+ +...|...|.. ...++.|.-+.+++.+. +--+..|+.-...|.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 44445566667777777776666654 22333322221 12345555566665542 223445566666777
Q ss_pred hCCChhHHHHHHhh
Q 046039 135 NCGFLSEARLMFDE 148 (502)
Q Consensus 135 ~~g~~~~a~~~~~~ 148 (502)
.+|..+.|-..+++
T Consensus 103 E~GspdtAAmaleK 116 (308)
T KOG1585|consen 103 ECGSPDTAAMALEK 116 (308)
T ss_pred HhCCcchHHHHHHH
Confidence 77777666655554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.57 Score=36.76 Aligned_cols=84 Identities=12% Similarity=0.107 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHH
Q 046039 93 SLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEID 172 (502)
Q Consensus 93 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 172 (502)
.++..+...+.+.....+++.+...+ ..++..++.++..|++.+ ..+....++. ..+.......++.|.+.+.++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---ccccCCHHHHHHHHHHcCcHH
Confidence 33444444444444444444444443 234444444444444332 2222223221 122233333444444444444
Q ss_pred HHHHHHHcc
Q 046039 173 ESRRLFDKM 181 (502)
Q Consensus 173 ~a~~~~~~~ 181 (502)
++.-++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 554444443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.063 Score=40.94 Aligned_cols=52 Identities=8% Similarity=0.078 Sum_probs=31.3
Q ss_pred CCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHH-hCCCCchhHHHHHHHHHH
Q 046039 83 PIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVK-QGLEFDQFIHNTIIYMYA 134 (502)
Q Consensus 83 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 134 (502)
...|+..+..+++.+++..|++..|+++++...+ .+++.+..+|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3456666666666666666666666666666544 345555566666665433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.72 Score=38.24 Aligned_cols=161 Identities=14% Similarity=0.146 Sum_probs=70.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
.||-+.--+...|+++.|.+.|+...+.++.-+-...+.-+ ++.--|++..|.+-+...-+...-.|-...|-.+.
T Consensus 101 vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~--- 176 (297)
T COG4785 101 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN--- 176 (297)
T ss_pred HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---
Confidence 55555555566666666666666666543322222222111 22334666666655555443212222222222111
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhcCCch
Q 046039 369 GRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE-------SCGYVLMSNLYAASYQFE 441 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~ 441 (502)
.+.-++.+|..-+.+--...|..-|...+..+.- |+.. ....++++.+...++ ..+|..|+.-+...|+.+
T Consensus 177 E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~ 254 (297)
T COG4785 177 EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLD 254 (297)
T ss_pred HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHH
Confidence 1233455555443222222333333322222211 1111 122333333322222 235666777777777777
Q ss_pred HHHHHHHHhhhcCC
Q 046039 442 EAMEERLLMKEVKI 455 (502)
Q Consensus 442 ~A~~~~~~~~~~~~ 455 (502)
+|..+|+-....++
T Consensus 255 ~A~~LfKLaiannV 268 (297)
T COG4785 255 EATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHhH
Confidence 77777776665444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.021 Score=31.77 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
.+|..++..|...|++++|.+.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35777888888888899999998888888875
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.44 Score=45.45 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=79.6
Q ss_pred HhcCCChHHHHHHHH--HhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 046039 62 FSQSSTPRNAILLFI--DMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFL 139 (502)
Q Consensus 62 ~~~~~~~~~a~~~~~--~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (502)
..-.++++++.+... .+.. .++ ....+.++..+-+.|..+.|+++..+- . .-.....+.|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~--~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP--NIP--KDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG--G----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhcc--cCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCH
Confidence 344566776655554 2221 122 223566666666777777776554322 1 233455667777
Q ss_pred hHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 046039 140 SEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKP 219 (502)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 219 (502)
+.|.++.++.. +...|..|.....+.|+++-|++.|.+.. -|..|+-.|.-.|+.++..++.+.....| .
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~- 404 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERG-D- 404 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHcc-C-
Confidence 77777665543 44567777777777777777777776653 35556666666777666666666666555 1
Q ss_pred CHHHHHHHHHHHhccCchHHHHHHH
Q 046039 220 SEFTMVSLLNACAKLGAIRQGEWIH 244 (502)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~a~~~~ 244 (502)
++....++...|++++..+++
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHH
Confidence 333344444456666555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.67 Score=43.43 Aligned_cols=145 Identities=12% Similarity=0.104 Sum_probs=96.4
Q ss_pred ChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhc---------CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh
Q 046039 302 YENEAIKLFSGLQS-SNLKPDY-ISFIAVLTACNH---------SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR 370 (502)
Q Consensus 302 ~~~~a~~~~~~~~~-~~~~p~~-~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (502)
..+.|+.+|.+... +...|+. ..|..+..++.. ..+..+|.+.-+...+. -+-|+.....+..+..-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh
Confidence 34577888888872 2244543 344444443322 23455666777766653 24456666677777778
Q ss_pred cCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH-HHhcCCchHHHHHH
Q 046039 371 AGLLEEAEKLIRSMPS-DPD-AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL-YAASYQFEEAMEER 447 (502)
Q Consensus 371 ~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~ 447 (502)
.++++.|..+|++... .|+ ..+|......+.-.|+.++|.+.++++++++|.....-..-.++ ..-....++|++++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 8889999999998865 464 55777778888889999999999999999999866543333323 23344577777765
Q ss_pred H
Q 046039 448 L 448 (502)
Q Consensus 448 ~ 448 (502)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.6 Score=40.17 Aligned_cols=73 Identities=8% Similarity=0.038 Sum_probs=32.7
Q ss_pred HHHHhCCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 046039 194 SGYVRNVKFKEALELFREMQEQN---IKPSEFTMVSLLNACAK---LGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMY 266 (502)
Q Consensus 194 ~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (502)
-+|....+++..+++.+.+.... +.-....-....-++.+ .|+.++|..++..+......+++.++..+++.|
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34555555555555555554331 11111112222333334 455555555555544444445555555555444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.82 Score=35.86 Aligned_cols=124 Identities=13% Similarity=0.058 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh
Q 046039 291 NSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR 370 (502)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (502)
..++..+...+.......+++.+...+. .+....+.++..|++. +.......++. . .+.......+..|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~-~~~~ll~~l~~--~-----~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY-DPQKEIERLDN--K-----SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH-CHHHHHHHHHh--c-----cccCCHHHHHHHHHH
Confidence 4455555556666677777776666553 4555666666666654 23344444432 1 112222335566666
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 371 AGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKH-GNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
.+.++++..++.++.. +...+..+... ++++.|.+++++ +.++..|..++..+
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 6667777777766652 22233333333 667777666664 23444555555443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.3 Score=37.60 Aligned_cols=85 Identities=12% Similarity=0.010 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCcchHH
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPS-------DPDA-IIWGSLLSACRKHGNIEMAKQAAKQIIE----LDKNESCGYV 428 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~ 428 (502)
+....+.+.+..++++|-..+.+-.. -++. ..+...+-.+.-..++..|..+++..-+ ..|++.....
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 33344555566666665554443321 1222 2344455555666677777777777554 3355555666
Q ss_pred HHHHHHHhcCCchHHHHH
Q 046039 429 LMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~ 446 (502)
.|..+ ...|+.+++..+
T Consensus 233 nLL~a-yd~gD~E~~~kv 249 (308)
T KOG1585|consen 233 NLLTA-YDEGDIEEIKKV 249 (308)
T ss_pred HHHHH-hccCCHHHHHHH
Confidence 66643 345666665554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.59 Score=44.59 Aligned_cols=160 Identities=10% Similarity=0.084 Sum_probs=105.1
Q ss_pred HHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHH
Q 046039 96 KAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESR 175 (502)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 175 (502)
+...-.++++.+.++...-.-. +..+....+.++..+.+.|-.+.|+++-..- ..-.....+.|+++.|.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDP---------DHRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-H---------HHHHHHHHHCT-HHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCCh---------HHHhHHHHhcCCHHHHH
Confidence 4455678888877776521111 1123556788999999999999999885431 23456678899999999
Q ss_pred HHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc
Q 046039 176 RLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELN 255 (502)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 255 (502)
++.++.. +...|..|.....+.|+++-|.+.|.+..+ +..|+-.|...|+.+.-.++.+.....| .
T Consensus 339 ~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-- 404 (443)
T PF04053_consen 339 EIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-- 404 (443)
T ss_dssp HHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C--
Confidence 9887765 667999999999999999999999987642 4566667778888888888887777665 2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcC
Q 046039 256 TIVVTAIIDMYCKCGCPERALQVFNTV 282 (502)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 282 (502)
++....++.-.|+.++..+++.+.
T Consensus 405 ---~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ---INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 233344455567777777766553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.23 Score=44.32 Aligned_cols=223 Identities=13% Similarity=0.048 Sum_probs=113.6
Q ss_pred HHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC-----CCchhHHHHHHHHHHh
Q 046039 196 YVRNVKFKEALELFREMQEQ--NIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCF-----ELNTIVVTAIIDMYCK 268 (502)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~ 268 (502)
+..+.+.++|+..+.+-+.. +...-..++..+..+.+..|.++++...--..++.-. ..-...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777787777766543 1112234566667777777777766543322111100 0112334445555555
Q ss_pred cCChHHHHHHHhcCCC--------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhcC
Q 046039 269 CGCPERALQVFNTVPK--------KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSN-----LKPDYISFIAVLTACNHS 335 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~ 335 (502)
.-++.+++.+-+.-.. ........+..++...+.++++++.|+...+-- ....-..+..+-..+...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 5555555544332211 112234445566666677777777776665421 111224566666666667
Q ss_pred CCHHHHHHHHHHhhh---hcCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHHhCCC-------CC-CHHHHHHHHHH
Q 046039 336 GKVNQAKDYFTLMTE---TYKIKPSIKHYS-----CMVDALGRAGLLEEAEKLIRSMPS-------DP-DAIIWGSLLSA 399 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~---~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~~~~l~~~ 399 (502)
.++++|.-+.....+ ..++..-...|. .+.-++...|.+.+|.+..++..+ ++ -......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 777777666554322 222222222222 233445556666666555544321 11 22344556667
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 046039 400 CRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 400 ~~~~~~~~~A~~~~~~~~~ 418 (502)
|...|+.+.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 7777777777777777655
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.057 Score=40.38 Aligned_cols=58 Identities=17% Similarity=0.100 Sum_probs=52.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 396 LLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 396 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
-..++...|+.+.|++.|.+++.+-|.++..|+..+.++.-+|+.++|+.-+++..+.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3456788999999999999999999999999999999999999999999988777653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.33 Score=38.52 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=48.2
Q ss_pred hcCChHHHHHHHhcCCCCCcchHHHHH-----HHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHH--HHHhcCCCHH
Q 046039 268 KCGCPERALQVFNTVPKKGLSCWNSMV-----FGLAMNGYENEAIKLFSGLQSSNLKPDYI-SFIAVL--TACNHSGKVN 339 (502)
Q Consensus 268 ~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~--~~~~~~~~~~ 339 (502)
+.+..++|+.-|..+.+.+...|..|. ....+.|+...|+..|.+.-.....|... -...|= -.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 445555555555555554443333322 22344555555555555554433223221 111111 1123344444
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 340 QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
....-.+-+... +.+.....-..|..+-.+.|++.+|.++|..+.
T Consensus 150 dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 150 DVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 444444443322 222222222334444444555555555554443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.033 Score=31.58 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
+|..|+..|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677777777777777777777543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.38 E-value=2.5 Score=39.96 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=26.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQSSNLK-PDYISFIAVLTACNHSGKVNQAKDYFTLM 348 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 348 (502)
+..+..+.|+.++|++.+++|.+.... .+......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 444444555555555555555432211 12233444555555555555555555544
|
The molecular function of this protein is uncertain. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.92 Score=34.30 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=78.8
Q ss_pred HhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeee---HHHHHHHHHhcCCHHHHH
Q 046039 99 AQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVA---WNSMIIGLAKCGEIDESR 175 (502)
Q Consensus 99 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~ 175 (502)
.-.|..++..++..+..... +..-+|.++--....-+-+-..+.++.+.+-.|... .-.++.+|+..+.
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~----- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNK----- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT------
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcc-----
Confidence 44577777777777776653 444455555555555555556666665543222221 1233333333332
Q ss_pred HHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC
Q 046039 176 RLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE 253 (502)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (502)
+....+..+.....+|.-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 85 ---------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ---------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -----------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ---------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33344556677788888888888888887644 777888888888888888888888888888887753
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.26 E-value=3.6 Score=40.93 Aligned_cols=323 Identities=15% Similarity=0.068 Sum_probs=163.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCC--chhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 046039 57 TIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGL--ARDGAQLHGRVVKQGLEFDQFIHNTIIYMYA 134 (502)
Q Consensus 57 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 134 (502)
.+|.-+...+.+..|+++.+.+... -.. ....|.....-+.+..+ -+.+++.+++=.+.-. .....|..+.....
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p-~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLP-ESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCc-ccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 4566777788899999998887542 111 14455555555554432 2233333333333212 34455777777777
Q ss_pred hCCChhHHHHHHhhcCCC-------CCeeeHHHHHHHHHhcCCHHHHHHHHHccCCC-ChhhHHHHHHHHHhCCChHHHH
Q 046039 135 NCGFLSEARLMFDEVDTE-------FDVVAWNSMIIGLAKCGEIDESRRLFDKMVSR-NTVSWNSMISGYVRNVKFKEAL 206 (502)
Q Consensus 135 ~~g~~~~a~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 206 (502)
..|+.+.|..+++.=... -+..-+..-+.-+.+.|+.+....++-.+... +...+.. -..+...|.
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~------~l~~~p~a~ 592 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM------TLRNQPLAL 592 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH------HHHhchhhh
Confidence 899999999988753321 12223344445555566666655555444221 1111111 122334455
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHH--HHHH----HcCCCCchhHHHHHHHHHHhcCChHHH-----
Q 046039 207 ELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIH--NFLV----TNCFELNTIVVTAIIDMYCKCGCPERA----- 275 (502)
Q Consensus 207 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~--~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A----- 275 (502)
.+|.+..+..-.. + +- .+.+.++-..+...+ +... ..+..|+ .......+.+.....-.
T Consensus 593 ~lY~~~~r~~~~~---~---l~-d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 593 SLYRQFMRHQDRA---T---LY-DFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred HHHHHHHHhhchh---h---hh-hhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHH
Confidence 5555543321011 0 11 111222211111111 1100 0111222 22223333333221111
Q ss_pred -----HHHHhcCCCC-C----cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 046039 276 -----LQVFNTVPKK-G----LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYF 345 (502)
Q Consensus 276 -----~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (502)
+.+.+.+... + -.+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.++...+++++-+++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 1111111111 1 1144555566677777777777766654 467777777777788878877766655
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046039 346 TLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQ 415 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 415 (502)
+... ++.-|.-++.+|.+.|+.++|.+++-+....+ -...+|.+.|++.+|.+..-+
T Consensus 739 kskk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 739 KSKK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hccC-------CCCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 4432 23445557778888888888888877765332 355667777777777665433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.20 E-value=2.3 Score=41.27 Aligned_cols=126 Identities=13% Similarity=0.040 Sum_probs=62.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHH-----HHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCCchhH
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQN-IKPSEF-----TMVSLLNACAK----LGAIRQGEWIHNFLVTNCFELNTIV 258 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~-----~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 258 (502)
...+++...=.|+-+.+++.+.+..+.+ +.-... .|...+..++. ..+.+.+.+++..+.+.- |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence 3444455555677777777776655432 111111 12222222222 335566666666666652 33333
Q ss_pred H-HHHHHHHHhcCChHHHHHHHhcCCCCC-------cchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046039 259 V-TAIIDMYCKCGCPERALQVFNTVPKKG-------LSCWNSMVFGLAMNGYENEAIKLFSGLQSS 316 (502)
Q Consensus 259 ~-~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (502)
| -.-.+.+...|+.++|++.|+...... ...+-.++-.+.-..++++|...|..+.+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 3 223445556667777777776544211 113333444455556666666666666553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.3 Score=37.34 Aligned_cols=64 Identities=6% Similarity=-0.061 Sum_probs=37.2
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhCCC-----CCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 363 CMVDALGRA-GLLEEAEKLIRSMPS-----DPDAI---IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 363 ~l~~~~~~~-g~~~~A~~~~~~~~~-----~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
.+...|... .++++|+..|+...+ +.+.. .+.-+...-...+++.+|+.+|++......+++..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 344445433 566666666665532 11111 22233333456789999999999998766555543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.73 Score=40.86 Aligned_cols=175 Identities=11% Similarity=0.011 Sum_probs=117.3
Q ss_pred HhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HH--HHHHHHHhcCCCHH
Q 046039 267 CKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYI--SF--IAVLTACNHSGKVN 339 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~--~~l~~~~~~~~~~~ 339 (502)
...|+..+|...++++.+. |..++..--.+|...|+.+.-...+++.... ..|+.. +| ..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3467888888778877764 5557777788899999999999999988865 233432 22 33444566789999
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---C---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 046039 340 QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD---P---DAIIWGSLLSACRKHGNIEMAKQAA 413 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~~l~~~~~~~~~~~~A~~~~ 413 (502)
+|++.-++..+. .+.|.-....+...+.-.|+..++.+++.+-... . -..-|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999998887752 2345556667777888899999999998876643 1 1122334445667779999999999
Q ss_pred HHHH--hcCCCCcchHH---HHHHHHHhcCCchHHH
Q 046039 414 KQII--ELDKNESCGYV---LMSNLYAASYQFEEAM 444 (502)
Q Consensus 414 ~~~~--~~~p~~~~~~~---~l~~~~~~~g~~~~A~ 444 (502)
++-+ ++..++..... -+--+..+...+.+-.
T Consensus 271 D~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld 306 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLD 306 (491)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHH
Confidence 8754 35666663322 2233444444444433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.83 E-value=1.7 Score=34.94 Aligned_cols=32 Identities=16% Similarity=0.086 Sum_probs=17.7
Q ss_pred HHHHhHhcCCCCCCcccHHHHHHHHHhcCCchh
Q 046039 74 LFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARD 106 (502)
Q Consensus 74 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 106 (502)
.++.+.+. +++|+...+..++..+.+.|++..
T Consensus 16 YirSl~~~-~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLNQH-NIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33334444 566666666666666666665443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.19 Score=44.00 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
++..++..+...|+++.+...+++++..+|-+...|..+..+|.+.|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4445556666666666666666666666666666666666666666666666666665543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.72 E-value=4 Score=38.75 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 046039 187 VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMY 266 (502)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (502)
....+++..+..+..+.-+..+..+|+..| .+...|..++.+|... ..+.-..+++++.+..+. |...-..|+..|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 344455666666666666666666666653 3555666666666665 455556666666665432 333334444444
Q ss_pred HhcCChHHHHHHHhcC
Q 046039 267 CKCGCPERALQVFNTV 282 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~ 282 (502)
-+ ++.+.+..+|.++
T Consensus 143 Ek-ik~sk~a~~f~Ka 157 (711)
T COG1747 143 EK-IKKSKAAEFFGKA 157 (711)
T ss_pred HH-hchhhHHHHHHHH
Confidence 33 5555555555543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.68 E-value=1.9 Score=40.74 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046039 363 CMVDALGRAGLLEEAEKLIRSMPSD-PD---AIIWGSLLSACRKHGNIEMAKQAAKQII 417 (502)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 417 (502)
.|..++.+.|+.++|++.++++.+. |. ..+...|+.++...+.+.++..++.+--
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 4455555666666666666655432 21 2244556666666666666666666543
|
The molecular function of this protein is uncertain. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.63 E-value=5.7 Score=40.15 Aligned_cols=176 Identities=15% Similarity=0.070 Sum_probs=117.6
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHccCCCCh---hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046039 157 AWNSMIIGLAKCGEIDESRRLFDKMVSRNT---VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK 233 (502)
Q Consensus 157 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 233 (502)
....-+..+.+...++-|+.+-+.-..+.. .........+.+.|++++|...|-+.... +.|. .++.-+..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 445566677777777777777766433211 12334455667889999999988776543 2333 23445556
Q ss_pred cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChHHHHHHHH
Q 046039 234 LGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS--CWNSMVFGLAMNGYENEAIKLFS 311 (502)
Q Consensus 234 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~ 311 (502)
......-..+++.+.+.|+. +......|+.+|.+.++.++-.++.+... .+.. -....+..+.+.+-.++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 66677777888888888854 55666778999999999999999998877 3332 35556677777777777766654
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 046039 312 GLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLM 348 (502)
Q Consensus 312 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 348 (502)
+... .......++ ...+++++|.++++.+
T Consensus 488 k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred Hhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 4332 333344443 4567899999998766
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.47 Score=40.92 Aligned_cols=97 Identities=10% Similarity=0.119 Sum_probs=70.5
Q ss_pred HHHHccC--CCChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-------------
Q 046039 176 RLFDKMV--SRNTVSWNSMISGYVR-----NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG------------- 235 (502)
Q Consensus 176 ~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------------- 235 (502)
..|.... ++|-.+|-..+..+.. .+..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444443 4566666666665543 3556667777888888888889999988888765432
Q ss_pred ---chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 236 ---AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 236 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
+-+-+..++++|...|+-||..+-..|++++.+.+-.
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345788999999999999999999999998877653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.078 Score=30.00 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 426 GYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 426 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999999854
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.19 Score=44.47 Aligned_cols=101 Identities=13% Similarity=-0.002 Sum_probs=70.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC
Q 046039 328 VLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGN 405 (502)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 405 (502)
-..-|.+.|.+++|+..|...+. -.+.++.++..-..+|.+..++..|+.-...+..- .-...|..-+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34567888888899888887764 22337777777778888888888777766555421 223356666666667788
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHH
Q 046039 406 IEMAKQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 406 ~~~A~~~~~~~~~~~p~~~~~~~~l 430 (502)
..+|.+-++.++++.|++...--.+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHH
Confidence 8888888888888888865544433
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.11 Score=28.39 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
-.++.++.+.|++++|.+.|+++++..|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34555666666666666666666666665
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=5.3 Score=37.84 Aligned_cols=240 Identities=10% Similarity=0.019 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------chHHHHHHHHHHHHcC-C-CCchhHHHHHHHHHHhcCChH-
Q 046039 203 KEALELFREMQEQNIKPSEFTMVSLLNACAKLG------AIRQGEWIHNFLVTNC-F-ELNTIVVTAIIDMYCKCGCPE- 273 (502)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~- 273 (502)
+....+|++..+. -|+...+...|..|...- .+.....+++.....+ . +.....|..+...+.......
T Consensus 299 s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 3445666666553 455566666666554322 3344445555554433 2 223455555555555555433
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhcCCC-HH--HHHHHHHHh
Q 046039 274 RALQVFNTVPKKGLSCWNSMVFGLAMN-GYENEAI-KLFSGLQSSNLKPDYISFIAVLTACNHSGK-VN--QAKDYFTLM 348 (502)
Q Consensus 274 ~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~--~a~~~~~~~ 348 (502)
.|..+.....+.+...|..-+...... .+++-.. +++......-..+-...+.... .|+ .+ .-..++..+
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 344444455555666665555544422 2332222 2333333322222333333332 122 11 112223333
Q ss_pred hhhcCCCCChhH-HHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCC
Q 046039 349 TETYKIKPSIKH-YSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACR--KHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 349 ~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
.. ...|+..+ -+.+++-+.+.|-..+|...+..+..- |+...|..++..-. .+-+...+.++|+.++.-...+
T Consensus 452 ~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 452 LS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGAD 529 (568)
T ss_pred HH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCC
Confidence 33 22344333 356677777888899999998887653 46667776665432 2334778888898888755577
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 424 SCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 424 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
+..|......-...|+.+.+-.++.++.
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 8788777766667788777766655443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.12 E-value=3 Score=34.80 Aligned_cols=177 Identities=11% Similarity=0.003 Sum_probs=102.0
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc-hHHHHH--HHHHhcCChHHHHHHHH
Q 046039 235 GAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS-CWNSMV--FGLAMNGYENEAIKLFS 311 (502)
Q Consensus 235 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~--~~~~~~g~~~~a~~~~~ 311 (502)
|-+.-|.--|.+..... +.-+.+||-|.--+...|+++.|.+.|+...+.|+. -|..+= -++---|++.-|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHH
Confidence 34444444444444433 334778888888888999999999999988887665 333322 23344688888888777
Q ss_pred HHHHCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHH-HHhhhhcCCCCChhHHHHH-HHHHHhcCCHHHHHHHHHhCCCC-
Q 046039 312 GLQSSNLK-PDYISFIAVLTACNHSGKVNQAKDYF-TLMTETYKIKPSIKHYSCM-VDALGRAGLLEEAEKLIRSMPSD- 387 (502)
Q Consensus 312 ~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~- 387 (502)
+.-+.+.. |-...|..+.. ..-++.+|..-+ ++... .+..-|... +..|.-.=..+.+.+-...-..+
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~-----~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK-----SDKEQWGWNIVEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh-----ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence 76665432 22233333322 333566665443 33332 233344333 33333222223333222222211
Q ss_pred -----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046039 388 -----PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420 (502)
Q Consensus 388 -----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 420 (502)
.-..+|--|+.-+...|+.++|..+|+-++..+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 224577888999999999999999999988754
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.45 Score=37.57 Aligned_cols=83 Identities=13% Similarity=0.004 Sum_probs=59.7
Q ss_pred hHHHHHHHH---HHhcCCHHHHHHHHHhCCC-CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 359 KHYSCMVDA---LGRAGLLEEAEKLIRSMPS-DPDAIIW-GSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 359 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~~-~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
.+.+.|+.. -.+.++.+++..++..+.. .|..... ..-+..+...|++.+|+.+|+.+.+..|..+..-..++.|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344555544 3477889999998887753 3543322 2344567889999999999999888888888888888888
Q ss_pred HHhcCCch
Q 046039 434 YAASYQFE 441 (502)
Q Consensus 434 ~~~~g~~~ 441 (502)
+...|+.+
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 87777754
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=4.3 Score=36.24 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=12.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELDK 421 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~p 421 (502)
..+.++...|.. +|+..+.++.+.+|
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 344444455543 45555555554444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.96 E-value=7.6 Score=38.97 Aligned_cols=147 Identities=10% Similarity=0.134 Sum_probs=76.5
Q ss_pred HHHHhcCCChHHHHHHHHHhHhcCCCCCC---cccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046039 59 IRGFSQSSTPRNAILLFIDMLVTSPIQPQ---RLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYAN 135 (502)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (502)
++-+.+.+.+++|++.-+... |..|. .......|..+...|+++.|-...-.|.. -+..-|...+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~---~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI---GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc---CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcc
Confidence 455666777777777766654 33442 23455566666677777777766666643 244555555555555
Q ss_pred CCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccC-------------C-------CChhhHHHHHHH
Q 046039 136 CGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMV-------------S-------RNTVSWNSMISG 195 (502)
Q Consensus 136 ~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------------~-------~~~~~~~~l~~~ 195 (502)
.++......++-.-....++..|..++..+.. .+...-.+....-. + .+...-..|+..
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~L 514 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHL 514 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHH
Confidence 55544433332222212344556666655555 22222111111110 0 122233346677
Q ss_pred HHhCCChHHHHHHHHHHH
Q 046039 196 YVRNVKFKEALELFREMQ 213 (502)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~ 213 (502)
|...+++..|+..+-.+.
T Consensus 515 Yl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHccChHHHHHHHHhcc
Confidence 777777777777765554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.43 Score=36.96 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=54.0
Q ss_pred hHHHHHHHHH---HhcCCHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 359 KHYSCMVDAL---GRAGLLEEAEKLIRSMPS-DPDAI-IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 359 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
...+.|+... ...++++++..+++.+.. .|+.. .-..-+..+...|++.+|..+|+++.+-.|..+..-..++.|
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 3444444432 357888888888877643 23322 112234457788888888888888887777777777777777
Q ss_pred HHhcCCch
Q 046039 434 YAASYQFE 441 (502)
Q Consensus 434 ~~~~g~~~ 441 (502)
+.-.|+.+
T Consensus 88 L~al~Dp~ 95 (153)
T TIGR02561 88 LNAKGDAE 95 (153)
T ss_pred HHhcCChH
Confidence 77777644
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.87 E-value=3.1 Score=34.11 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=59.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 046039 328 VLTACNHSGKVNQAKDYFTLMTETYKIKPSI----KHYSCMVDALGRAGLLEEAEKLIRSMPSDP-DAIIWGSLLSACRK 402 (502)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~ 402 (502)
+...+...|++++|+..++..... +.|. ..--.|.+.....|.+++|...++....+. .......-+..+..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 344566777888888777766532 1221 112245566777888888888888776431 22334455677888
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 046039 403 HGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 403 ~~~~~~A~~~~~~~~~~~p~ 422 (502)
.|+-++|...|+++++.+++
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 88888888888888877644
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.093 Score=29.03 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=26.1
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
.++..++.+|...|++++|++.+++..+..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4688999999999999999999999876543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.18 Score=29.45 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
.+++.|+..|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777777765
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.2 Score=39.59 Aligned_cols=85 Identities=13% Similarity=0.181 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHH
Q 046039 93 SLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEID 172 (502)
Q Consensus 93 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 172 (502)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++... ......++..|.+.|.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~----~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN----NYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS----SS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc----ccCHHHHHHHHHhcchHH
Confidence 3466666777888888888888876656667788888888888877777777776332 244456666677777777
Q ss_pred HHHHHHHcc
Q 046039 173 ESRRLFDKM 181 (502)
Q Consensus 173 ~a~~~~~~~ 181 (502)
++.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 776666665
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.67 E-value=4.1 Score=37.91 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 388 PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDK----NESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
....+|..++..+.+.|+++.|...+.++...++ ..+.+....+..++..|+..+|...++......+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4556888999999999999999999999987552 2466777788899999999999999888877433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.56 E-value=2.3 Score=34.00 Aligned_cols=122 Identities=17% Similarity=0.171 Sum_probs=66.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHH--HHHHhcCC
Q 046039 297 LAMNGYENEAIKLFSGLQSSNLKPDYI-SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMV--DALGRAGL 373 (502)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~ 373 (502)
+++.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-....+|.-..-...|= ..+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 456677777777777777765442221 112223335566777777777777764422211111111111 22345666
Q ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 374 LEEAEKLIRSMPSDPD---AIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 374 ~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
++......+.+..+.+ ...-..|.-+-.+.|++.+|.+.|+.+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7776666666554322 22344566666677777777777777655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.52 E-value=12 Score=39.71 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=12.6
Q ss_pred HHHHHHHhCC--ChHHHHHHHHHHH
Q 046039 191 SMISGYVRNV--KFKEALELFREMQ 213 (502)
Q Consensus 191 ~l~~~~~~~~--~~~~a~~~~~~m~ 213 (502)
.++.+|.+.+ ..+.++....+..
T Consensus 795 ~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 795 FILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4556666655 4555555555544
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.41 Score=29.86 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
-.+..++.+.|++++|.+..+.+++.+|+|..+.....
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 34677889999999999999999999999987655443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.13 Score=28.54 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=26.2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
.+|..++.+|...|++++|+..+++..+..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4688999999999999999999999886543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.98 Score=39.07 Aligned_cols=105 Identities=12% Similarity=0.152 Sum_probs=75.2
Q ss_pred HHHHhcCC--CCCcchHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC-------------
Q 046039 276 LQVFNTVP--KKGLSCWNSMVFGLAM-----NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHS------------- 335 (502)
Q Consensus 276 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------------- 335 (502)
+..|..+. +.+-.+|.+.+..+.. .+.++=....++.|.+.|+.-|..+|..|+..+-+.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34455554 4455677777766654 356666677788899999988999999998876543
Q ss_pred ---CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHH
Q 046039 336 ---GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLL-EEAEKLI 381 (502)
Q Consensus 336 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~ 381 (502)
.+-+-++.++++|... |+-||..+-..|+.++.+.+-. .+..+++
T Consensus 134 HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKRML 182 (406)
T ss_pred hCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHHHH
Confidence 2335578899999776 9999999999999999887753 3334443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=93.03 E-value=1.3 Score=31.76 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 046039 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVD 366 (502)
Q Consensus 305 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 366 (502)
+..+-++.+...++.|++......+++|.+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4556667777778899999999999999999999999999999987544 33336766664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.9 Score=35.43 Aligned_cols=98 Identities=14% Similarity=0.038 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHH---
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY--ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSC--- 363 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 363 (502)
.+..++..|.+.|+.+.|++.|.++.+....+.. ..+..+++.+...+++..+...+.+......-..+...-+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5566677777777777777777777775444433 34566777777778888877777766543111111111111
Q ss_pred -HHHHHHhcCCHHHHHHHHHhCCC
Q 046039 364 -MVDALGRAGLLEEAEKLIRSMPS 386 (502)
Q Consensus 364 -l~~~~~~~g~~~~A~~~~~~~~~ 386 (502)
-.-.+...+++.+|-+.|-....
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 11223456788888887766653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.69 Score=32.70 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 046039 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVD 366 (502)
Q Consensus 305 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 366 (502)
++.+-++.+...++.|++......+++|.+.+++..|.++++.++.+.+ .+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4556667777778899999999999999999999999999998876433 24446665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.95 E-value=2.7 Score=40.63 Aligned_cols=151 Identities=24% Similarity=0.139 Sum_probs=98.3
Q ss_pred HhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 046039 267 CKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFT 346 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 346 (502)
...|+++.|..++..+.+. ..+.++.-+.++|-.++|+++ .+|+.--. ....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rF---elal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRF---ELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhh---hhhhhcCcHHHHHHHHH
Confidence 3467777777777666632 344555666667777776654 23332211 12336688888877765
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 347 LMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
+.. +..-|..|.++..+.|++..|.+-|.+.. -|..|+-.+...|+.+....+-..+.+....|..+
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF 728 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAF 728 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchHH
Confidence 542 45678888888888899999988888776 36667777777777776666666665555554433
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHh
Q 046039 427 YVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
.+|...|+++++.+++..-
T Consensus 729 -----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 -----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred -----HHHHHcCCHHHHHHHHHhc
Confidence 3566788888888776553
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.91 E-value=22 Score=40.98 Aligned_cols=61 Identities=13% Similarity=0.004 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
..+|-...+.....|+++.|...+-.+.+..-+..+.-.+.-+...|+...|+.++++.++
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4455555665556677777766554444332333444455566667777777777777665
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.85 E-value=13 Score=38.19 Aligned_cols=213 Identities=11% Similarity=0.082 Sum_probs=117.5
Q ss_pred HHHhCCChhHHHHHHhhcCC---CCCee-------eHHHHH-HHHHhcCCHHHHHHHHHccCC--------CChhhHHHH
Q 046039 132 MYANCGFLSEARLMFDEVDT---EFDVV-------AWNSMI-IGLAKCGEIDESRRLFDKMVS--------RNTVSWNSM 192 (502)
Q Consensus 132 ~~~~~g~~~~a~~~~~~~~~---~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l 192 (502)
......++++|..++.++.. .|+.. .|+.+- ......|++++|.++.+.... .....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 44557888888888876543 23322 244433 234457888888888776632 245567777
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHhccCchHH--HHHHHHHHHHcC---CC---CchhHH
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLL-----NACAKLGAIRQ--GEWIHNFLVTNC---FE---LNTIVV 259 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-----~~~~~~~~~~~--a~~~~~~~~~~~---~~---~~~~~~ 259 (502)
..+..-.|++++|..+.....+..-.-+...+..+. ..+...|+... ....+....... .+ +-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 788888999999999988776643233333333222 22445563322 223333322211 01 122344
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC------CCc-c---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHHHH
Q 046039 260 TAIIDMYCKCGCPERALQVFNTVPK------KGL-S---CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP----DYISF 325 (502)
Q Consensus 260 ~~l~~~~~~~g~~~~A~~~~~~~~~------~~~-~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~ 325 (502)
..+..++.+ .+.+..-...-.+ +.. . .+..|+......|+.++|...+.++......+ +..+-
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 445555554 3333332222211 111 1 23467788888999999999998887643333 22222
Q ss_pred HHHHHH--HhcCCCHHHHHHHHHH
Q 046039 326 IAVLTA--CNHSGKVNQAKDYFTL 347 (502)
Q Consensus 326 ~~l~~~--~~~~~~~~~a~~~~~~ 347 (502)
...+.. -...|+...+.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 222222 2356888888777665
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.25 Score=26.33 Aligned_cols=31 Identities=29% Similarity=0.254 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
.|..++..+...|+++.|...++++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666666667777777777766666554
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.8 Score=40.47 Aligned_cols=89 Identities=11% Similarity=0.032 Sum_probs=42.9
Q ss_pred HHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 046039 368 LGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 445 (502)
+...|+++.+...+.....- ....+..+++....+.|++++|....+-++.-.-.++.+....+-.-...|-+|++..
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 34455555555554433221 2233444555555555555555555555555444444433333333344455555555
Q ss_pred HHHHhhhcCCc
Q 046039 446 ERLLMKEVKIE 456 (502)
Q Consensus 446 ~~~~~~~~~~~ 456 (502)
.++++..-+.+
T Consensus 413 ~wk~~~~~~~~ 423 (831)
T PRK15180 413 YWKRVLLLNPE 423 (831)
T ss_pred HHHHHhccCCh
Confidence 55555544433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.41 E-value=4.6 Score=32.07 Aligned_cols=108 Identities=16% Similarity=0.140 Sum_probs=59.1
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 046039 332 CNHSGKVNQAKDYFTLMTETYKIKPSIKHY-SCMVDALGRAGLLEEAEKLIRSMPSD-PDAIIWGSLLSACRKHGNIEMA 409 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 409 (502)
-...++.+.+..++..+.. +.|..... ..-...+.+.|++.+|..+|+++... |....-..|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 4466788888888888864 34443222 22344567889999999999988765 4444444555555443333333
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 046039 410 KQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAM 444 (502)
Q Consensus 410 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 444 (502)
.....++++..+ ++.....+ ..+........|.
T Consensus 97 r~~A~evle~~~-d~~a~~Lv-~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 97 RRYADEVLESGA-DPDARALV-RALLARADLEPAH 129 (160)
T ss_pred HHHHHHHHhcCC-ChHHHHHH-HHHHHhccccchh
Confidence 334444555444 33333333 3344443443343
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.40 E-value=14 Score=37.49 Aligned_cols=212 Identities=16% Similarity=0.174 Sum_probs=89.8
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCc-------hhHHHHHHHHHHhCCCCch
Q 046039 51 NLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLA-------RDGAQLHGRVVKQGLEFDQ 123 (502)
Q Consensus 51 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~ 123 (502)
+...| .+|-.+.|.|.+++|.++...... ........+...+..+....+. +....-|++..+.....|+
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 34455 567778899999999999976665 4556667788888888765322 3444455555443322243
Q ss_pred h---HHHHHHHHHHhCCC----hhH----HHHHH--h--hcCC-CC------CeeeHHHHHHHHHhcCCHHHHHHHHHcc
Q 046039 124 F---IHNTIIYMYANCGF----LSE----ARLMF--D--EVDT-EF------DVVAWNSMIIGLAKCGEIDESRRLFDKM 181 (502)
Q Consensus 124 ~---~~~~l~~~~~~~g~----~~~----a~~~~--~--~~~~-~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 181 (502)
. +|..+ .++.- ... .+.++ + -+.. .+ +..++..+-+...+-|. ..|..
T Consensus 188 yK~AvY~il----g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge-----~~F~~- 257 (613)
T PF04097_consen 188 YKRAVYKIL----GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGE-----SHFNA- 257 (613)
T ss_dssp HHHHHHHHH----HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-G-----GGCTT-
T ss_pred HHHHHHHHH----hcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhch-----hhccc-
Confidence 2 22222 22211 100 11111 0 0000 00 01122111111111110 01111
Q ss_pred CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC-CCCchhHHH
Q 046039 182 VSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC-FELNTIVVT 260 (502)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 260 (502)
..++..| ...+.-.|+++.|.+++-. ..+...+..++...+..+.-.+-..... ..+.... -.+.+.-+.
T Consensus 258 -~~~p~~Y---f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~a 328 (613)
T PF04097_consen 258 -GSNPLLY---FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFA 328 (613)
T ss_dssp -------H---HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HH
T ss_pred -chhHHHH---HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHH
Confidence 1233333 3445668999999999877 2233556666666555443322222111 2222211 112225577
Q ss_pred HHHHHHHh---cCChHHHHHHHhcCCC
Q 046039 261 AIIDMYCK---CGCPERALQVFNTVPK 284 (502)
Q Consensus 261 ~l~~~~~~---~g~~~~A~~~~~~~~~ 284 (502)
.|+..|.+ ..+..+|.++|--+..
T Consensus 329 rLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 329 RLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 78888876 4577888888876654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.5 Score=39.30 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=73.4
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCC--C----CChhHHHHHhccCCC-------CCcchHHHHHHHHhcCCCh
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSP--A----GDINYAYLVFTQIKK-------PNLFIWNTIIRGFSQSSTP 68 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~--~----~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~ 68 (502)
++...+++.|.+.|+.-+..+|.+.+... .. . .....|..+|+.|++ ++-..+..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~-~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIIL-EEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677888889998888887777755544 22 1 345667778888775 333445555443 33333
Q ss_pred ----HHHHHHHHHhHhcCCCCCCcc-cHHHHHHHHHhc-CC--chhHHHHHHHHHHhCCCCchhHHHHHHH
Q 046039 69 ----RNAILLFIDMLVTSPIQPQRL-TYPSLFKAYAQL-GL--ARDGAQLHGRVVKQGLEFDQFIHNTIIY 131 (502)
Q Consensus 69 ----~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 131 (502)
+.+...|+.+.+. |...+.. -+.+-+-++... .. ...+..+++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 4556667777665 5544432 222222222211 11 3467777888888887777666655443
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.8 Score=32.88 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=48.0
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHhCCC--CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 355 KPSIKHYSCMVDALGRAGL---LEEAEKLIRSMPS--DPD--AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 355 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~--~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
.++..+--.+..++.+..+ ..+.+.+|+.+.. .|+ -....-|.-++.+.|+++++++..+.+++.+|+|..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4555555566667766654 4555667777663 232 2244456677888888888888888888888887654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.52 Score=41.82 Aligned_cols=79 Identities=18% Similarity=0.030 Sum_probs=57.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcC
Q 046039 294 VFGLAMNGYENEAIKLFSGLQSSNLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAG 372 (502)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 372 (502)
..-|.++|.+++|++.|.+.+.. .| +++++..-..+|.+...+..|+.-....... | ...+.+|.+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-----d----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-----D----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-----h----HHHHHHHHHHH
Confidence 56799999999999999988874 45 8899999999999999999888777766542 2 23455565555
Q ss_pred CHHHHHHHHHh
Q 046039 373 LLEEAEKLIRS 383 (502)
Q Consensus 373 ~~~~A~~~~~~ 383 (502)
.-.+++....+
T Consensus 173 ~AR~~Lg~~~E 183 (536)
T KOG4648|consen 173 QARESLGNNME 183 (536)
T ss_pred HHHHHHhhHHH
Confidence 44444443333
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.21 E-value=4.3 Score=35.03 Aligned_cols=180 Identities=13% Similarity=0.113 Sum_probs=94.6
Q ss_pred ChHHHHHHHhcCCCC-------CcchHHHHHHHHHhcCChHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHhcCCCH
Q 046039 271 CPERALQVFNTVPKK-------GLSCWNSMVFGLAMNGYENEAIKLFSGLQSS---NL--KPDYISFIAVLTACNHSGKV 338 (502)
Q Consensus 271 ~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~--~p~~~~~~~l~~~~~~~~~~ 338 (502)
++++|+.-|.++.+. +..+...++..+.+.|++++.+..|+++... .+ .-+..+.+.++.......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 455555555544331 1224445566666666666666666655421 01 12344555666555555555
Q ss_pred HHHHHHHHHhhhhc----CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--------------CCHHHHHHHHHHH
Q 046039 339 NQAKDYFTLMTETY----KIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--------------PDAIIWGSLLSAC 400 (502)
Q Consensus 339 ~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~~~~~~~~l~~~~ 400 (502)
+...++++...... +-..--.+-..|...|...|.+.+..++++++... .-..+|..=+..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 54444444332211 11111222345667777777777777777665321 1123555566677
Q ss_pred HhcCCHHHHHHHHHHHHhcC--CCCcchHHHHH----HHHHhcCCchHHHH-HHHHh
Q 046039 401 RKHGNIEMAKQAAKQIIELD--KNESCGYVLMS----NLYAASYQFEEAME-ERLLM 450 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~----~~~~~~g~~~~A~~-~~~~~ 450 (502)
-..++-.+-..+|++++... -++|.+.-.+- ..+.+.|+|++|.. +|+..
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 77777778888888877644 23443333332 23566777877764 34443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.13 E-value=18 Score=38.38 Aligned_cols=114 Identities=18% Similarity=0.135 Sum_probs=55.1
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 046039 263 IDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAK 342 (502)
Q Consensus 263 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 342 (502)
++.--+.|-+.+|+.++..-.+.-...|.+....+...+.+++|.-.|+..-+ ..-.+.+|...|+|.+|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREAL 985 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHH
Confidence 33334555566666555543333333455555555555555555555544321 112344555556666666
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 046039 343 DYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD 387 (502)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 387 (502)
.+..++.. +-..-..+-..|+.-+...++.-+|-++..+...+
T Consensus 986 ~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 986 SLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 66555432 11111111234555555666666666665555443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.07 E-value=1.1 Score=39.51 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
..+.+-.+|.+.++++.|+.+.+.++.+.|+++.-+.-.|.+|.+.|.+..|..=++...+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 346677789999999999999999999999999999999999999999999999877776543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.56 Score=39.45 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=35.7
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 388 PDA-IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 388 ~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
|.+ ..|..=+.++.+.++++.+..-..+++++.|+.....+.++.++.....+++|+.++.+.
T Consensus 41 P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 41 PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 443 233444455555556666666666666666666656666666666666666666555554
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.76 Score=28.66 Aligned_cols=50 Identities=16% Similarity=0.028 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHhcC
Q 046039 426 GYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQEMG 501 (502)
Q Consensus 426 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 501 (502)
..+.++.++.+.|++++|.++.+.+.+ .+|++.........|.+++.+.|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccC
Confidence 356677789999999999999999874 46677777777777777777665
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.81 E-value=3.2 Score=34.07 Aligned_cols=100 Identities=19% Similarity=0.113 Sum_probs=67.1
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcC
Q 046039 332 CNHSGKVNQAKDYFTLMTETYKIKPS-----IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD-AIIWGSLLSACRKHG 404 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~ 404 (502)
+...|++++|..-|...+. -+++. ...|..-..++.+.+.++.|+.-..+... .|. ......-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4567788888888877776 33332 22344444566778888888877766553 232 223344456788888
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 405 NIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 405 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
.+++|++-|+++++.+|....+....+.+
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999999877665555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.73 E-value=2.3 Score=37.48 Aligned_cols=77 Identities=9% Similarity=0.020 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-----cCCCCchhHHHH
Q 046039 187 VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVT-----NCFELNTIVVTA 261 (502)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 261 (502)
.++..++..+...|+++.+.+.++++.... +-+...|..++.+|...|+...|+..|+.+.+ .|+.|.+.+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 355667777777788888888888887775 66777888888888888888888877777664 466666655544
Q ss_pred HHH
Q 046039 262 IID 264 (502)
Q Consensus 262 l~~ 264 (502)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.23 Score=25.54 Aligned_cols=24 Identities=13% Similarity=-0.074 Sum_probs=16.6
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERL 448 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~ 448 (502)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777777777777654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=91.55 E-value=3.1 Score=29.76 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=35.6
Q ss_pred HHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 046039 165 LAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMV 225 (502)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 225 (502)
+...|++++|..+.+...-||...|.+|.. -+.|-.+++...+..|...| .|....|.
T Consensus 49 LmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 555666666666666666667666665543 35566666666666676666 55444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.55 E-value=1.3 Score=35.78 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=41.5
Q ss_pred CCC-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 387 DPD-AIIWGSLLSACRKHG-----------NIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 387 ~~~-~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+|+ ..++..++.+|...+ .+++|...|+++...+|++......|-.+ ++|-++..++.+.+
T Consensus 65 ~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 65 NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQG 137 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSS
T ss_pred CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHH
Confidence 364 357777777776443 36788888888889999998776666533 45777777777665
Q ss_pred Cc
Q 046039 455 IE 456 (502)
Q Consensus 455 ~~ 456 (502)
..
T Consensus 138 ~~ 139 (186)
T PF06552_consen 138 LG 139 (186)
T ss_dssp S-
T ss_pred hh
Confidence 53
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.39 E-value=6.5 Score=31.67 Aligned_cols=136 Identities=9% Similarity=0.048 Sum_probs=84.6
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhc-CCHHHHHHHHHccCCCCh
Q 046039 108 AQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKC-GEIDESRRLFDKMVSRNT 186 (502)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~ 186 (502)
.++++-+.+.+++|+...+..+++.+.+.|++..-..++.--.-+++...-..++..-.+. .-..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 4455666778899999999999999999999988888776544233333322222221111 11233444444443
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC
Q 046039 187 VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC 251 (502)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 251 (502)
..+..++..+...|++-+|+++.+...... .+ ....++.+..+.+|...-..+++...+.+
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~---~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SV---PARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cC---CHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 356667788888999999998887753322 12 22445666677777666666666665543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.27 Score=26.84 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 426 GYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 426 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
++..++.++.+.|++++|.+.++++.+.-+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 467889999999999999999999987543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.16 E-value=4.1 Score=33.41 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCc------chHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCH----HH
Q 046039 258 VVTAIIDMYCKCGCPERALQVFNTVPKKGL------SCWNSMVFGLAMNGYENEAIKLFSGLQSS---NLKPDY----IS 324 (502)
Q Consensus 258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~----~~ 324 (502)
.+..+...|.+.|+.+.|.+.|.++.+... ..+..++....-.+++..+...+.+.... |..++. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 345566666666666666666666554321 14555566666666666666666555432 111111 12
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
|..+ .+...+++..|-+.|-.....
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccCcC
Confidence 2222 233467888888887776543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.94 Score=38.31 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 393 WGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 393 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+..+..++...|++-++++.....+...|.|..+|...+.+....=+.++|.+-|..+.+..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 33445566778899999999999999999999999999988888888888888777776544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.79 E-value=12 Score=33.53 Aligned_cols=50 Identities=16% Similarity=0.001 Sum_probs=21.7
Q ss_pred CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCC
Q 046039 152 EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVK 201 (502)
Q Consensus 152 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 201 (502)
.++..+....+..+...|..+-...+..-+..+|+..-...+.++.+.|+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 44444444444555544443333333332233444444444444444444
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=90.58 E-value=22 Score=36.24 Aligned_cols=419 Identities=10% Similarity=-0.018 Sum_probs=189.5
Q ss_pred HHHHHHHhhhCCCCChhHHHHHhccCCCCCcch---HHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHH
Q 046039 22 AASRILAFCTSPAGDINYAYLVFTQIKKPNLFI---WNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAY 98 (502)
Q Consensus 22 ~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 98 (502)
.|......+ +.|++..+.++-..+....... |..+...+ ....+++....+++-. +.+.....-...+..+
T Consensus 36 ~f~~A~~a~--~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~---~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 36 RYQQIKQAW--DNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDL-MNQPAVQVTNFIRANP---TLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHH--HCCCHHHHHHHHHhccCCCcHhHHHHHHHHhcc-ccCCHHHHHHHHHHCC---CCchHHHHHHHHHHHH
Confidence 344444444 6677777777777765322222 22222211 1223444444433332 1122222222333444
Q ss_pred HhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHH-
Q 046039 99 AQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESR- 175 (502)
Q Consensus 99 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~- 175 (502)
.+.+++...+..+. . .+.+.........+....|+.++|....+.+-. ...+..++.++..+.+.|.+....
T Consensus 110 a~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~ 184 (644)
T PRK11619 110 ARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAY 184 (644)
T ss_pred HHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHH
Confidence 55556665554221 1 234555556667777778887766655555422 344556666666666544332211
Q ss_pred -HHHHcc-CCCChhhHHHHHHHH-----------Hh-CCChHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHhccCchH
Q 046039 176 -RLFDKM-VSRNTVSWNSMISGY-----------VR-NVKFKEALELFREMQEQNIKPSEFTMV---SLLNACAKLGAIR 238 (502)
Q Consensus 176 -~~~~~~-~~~~~~~~~~l~~~~-----------~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~---~ll~~~~~~~~~~ 238 (502)
+=++.. ...+...-..+...+ .. ..++..+...+. .++|+...-. ..+.-+ ...+.+
T Consensus 185 w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rl-ar~d~~ 258 (644)
T PRK11619 185 LERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASV-ARQDAE 258 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHH-HHhCHH
Confidence 111111 111211111111111 00 011111111111 1122221111 111112 234556
Q ss_pred HHHHHHHHHHHcC-CCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 046039 239 QGEWIHNFLVTNC-FELN--TIVVTAIIDMYCKCGCPERALQVFNTVPKK--GLSCWNSMVFGLAMNGYENEAIKLFSGL 313 (502)
Q Consensus 239 ~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (502)
.|...+....... ..+. ..+...+....+..+...+|...+...... +.......+..-...++++.+...+..|
T Consensus 259 ~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L 338 (644)
T PRK11619 259 NARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARL 338 (644)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhc
Confidence 6777776653332 2111 112223322222222245555555554322 2233333344444666776666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc-----------CCC-----C-ChhH--------HHHHHHHH
Q 046039 314 QSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETY-----------KIK-----P-SIKH--------YSCMVDAL 368 (502)
Q Consensus 314 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~-----~-~~~~--------~~~l~~~~ 368 (502)
.... .-...-..-+.+++...|+.++|..+|+.+.... |.+ + .+.. -..-+..+
T Consensus 339 ~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L 417 (644)
T PRK11619 339 PMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVREL 417 (644)
T ss_pred CHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHH
Confidence 4421 2233444455566555677777777666653211 111 0 0000 01123445
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHH
Q 046039 369 GRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELD---KNESCGYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~ 445 (502)
...|....|...+..+....+......+.....+.|.++.++....+....+ -..|..|......+.+.-..+.++-
T Consensus 418 ~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv 497 (644)
T PRK11619 418 MYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYA 497 (644)
T ss_pred HHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHH
Confidence 5778888888877776655666666667777778888888887776544311 1223345555555555555666654
Q ss_pred HHHHhhhcCCccC
Q 046039 446 ERLLMKEVKIEKE 458 (502)
Q Consensus 446 ~~~~~~~~~~~~~ 458 (502)
.--.-.+.+..|.
T Consensus 498 ~ai~rqES~f~p~ 510 (644)
T PRK11619 498 MAIARQESAWNPK 510 (644)
T ss_pred HHHHHHhcCCCCC
Confidence 3222234444443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.49 E-value=20 Score=35.79 Aligned_cols=272 Identities=10% Similarity=0.015 Sum_probs=157.5
Q ss_pred HHHHHHHHHccCCC-ChhhHHHHHHH-----HHhCCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC--
Q 046039 171 IDESRRLFDKMVSR-NTVSWNSMISG-----YVRNVKFKEALELFREMQE-------QNIKPSEFTMVSLLNACAKLG-- 235 (502)
Q Consensus 171 ~~~a~~~~~~~~~~-~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~-- 235 (502)
...+...++..... +...-..+..+ +....+.+.|+.+|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777776443 33333333322 3456789999999988866 44 2224555666666543
Q ss_pred ---chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc---CChHHHHHHHhcCCCCCc-chHHHHHHHHHh----cCChH
Q 046039 236 ---AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKC---GCPERALQVFNTVPKKGL-SCWNSMVFGLAM----NGYEN 304 (502)
Q Consensus 236 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~----~g~~~ 304 (502)
+.+.|..++....+.|. |+.... +..+|..- .+...|..+|....+.+- .++-.+...|.. ..+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 56778888888888873 333322 33333322 356788888888776543 333333333332 34778
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH---Hh----cCCHHHH
Q 046039 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL---GR----AGLLEEA 377 (502)
Q Consensus 305 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A 377 (502)
.|..++++..+.| .|....-...+..+.. ++++.+.-.+..+... +.......-..++... .. ..+...+
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 8999999988887 3343333333344444 6666666555555443 3222111111111111 11 2255666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-CC--chHHHHHHHHh
Q 046039 378 EKLIRSMPSDPDAIIWGSLLSACRKH----GNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS-YQ--FEEAMEERLLM 450 (502)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~--~~~A~~~~~~~ 450 (502)
...+.+...+-+......+...|... .+++.|...+..+.... ......++.++... |- +..|.++++..
T Consensus 459 ~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~ 535 (552)
T KOG1550|consen 459 FSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQA 535 (552)
T ss_pred HHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHH
Confidence 66676666555666666676666543 46888988888887655 66677777666653 22 57788888777
Q ss_pred hhcC
Q 046039 451 KEVK 454 (502)
Q Consensus 451 ~~~~ 454 (502)
.+.+
T Consensus 536 ~~~~ 539 (552)
T KOG1550|consen 536 SEED 539 (552)
T ss_pred HhcC
Confidence 6544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.25 E-value=13 Score=33.23 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhCCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc
Q 046039 188 SWNSMISGYVRNVKF---KEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTN 250 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 250 (502)
+...++.+|...+.. ++|..+++.+.... +..+..+..-++.+.+.++.+.+.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 456667777776654 34555555664432 223445555666666677777777777777765
|
It is also involved in sporulation []. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.59 Score=25.72 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
.++..++.+|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36889999999999999999999998764
|
... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.17 E-value=11 Score=32.08 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=33.7
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC---CCHHHH------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 366 DALGRAGLLEEAEKLIRSMPSD---PDAIIW------GSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
..-...+++.+|+.+|+++... .+..-| ..-+.++....+.-.+...+++-.+++|.-.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 3344667788888888776431 111112 1222333444677777777777777787644
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.14 E-value=25 Score=36.25 Aligned_cols=218 Identities=17% Similarity=0.085 Sum_probs=110.8
Q ss_pred HHHhccCchHHHHHHHHHHHHcCCCCchh-------HHHHHH-HHHHhcCChHHHHHHHhcCCC--------CCcchHHH
Q 046039 229 NACAKLGAIRQGEWIHNFLVTNCFELNTI-------VVTAII-DMYCKCGCPERALQVFNTVPK--------KGLSCWNS 292 (502)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~ 292 (502)
.......++.+|..++.++...-..|+.. .++.|- ......|+++.|.++-+.... ..+..+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 33456677888888777766543232211 122221 123346777877776654432 23456777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHH--HHHhcCCCHH--HHHHHHHHhhhhcCC-CC----ChhH
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQSSNLKPDYIS---FIAVL--TACNHSGKVN--QAKDYFTLMTETYKI-KP----SIKH 360 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~l~--~~~~~~~~~~--~a~~~~~~~~~~~~~-~~----~~~~ 360 (502)
+..+..-.|++++|..+.++..+..-..+... +..+. ..+...|+.. +.+..+......+.. +| -..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 77888888999998888776655322223322 22222 2244566332 223333333221111 11 1233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----C-CCC--HH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcchHHH
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMP----S-DPD--AI--IWGSLLSACRKHGNIEMAKQAAKQIIELD--KNESCGYVL 429 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~----~-~~~--~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~ 429 (502)
+..+..++.+ .+.+..-..... . .|. .. .+..|+......|+.++|...+.++..+. +.....|..
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 3444444444 333333222221 1 122 22 22367788888999999999999988743 321222211
Q ss_pred H-----HHHHHhcCCchHHHHHHHH
Q 046039 430 M-----SNLYAASYQFEEAMEERLL 449 (502)
Q Consensus 430 l-----~~~~~~~g~~~~A~~~~~~ 449 (502)
. ...-..+|+..+|.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 1 1122346888777776555
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.51 Score=26.22 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=21.6
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhCCChhHHH
Q 046039 111 HGRVVKQGLEFDQFIHNTIIYMYANCGFLSEAR 143 (502)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 143 (502)
|++.++.. |-+...|+.+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455553 446777777888888888877775
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.83 E-value=12 Score=32.35 Aligned_cols=220 Identities=16% Similarity=0.199 Sum_probs=117.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc-----CCCCchhH
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQ---NI--KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTN-----CFELNTIV 258 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 258 (502)
.-.++..+.+.+++++.++.|.+|+.- .+ .-+..+.+.++...+...+.+.-..+++.-++. +-..--.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 345677777888888888877777431 11 223455666666555555555444444432221 11112233
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCC------------C---cchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH
Q 046039 259 VTAIIDMYCKCGCPERALQVFNTVPKK------------G---LSCWNSMVFGLAMNGYENEAIKLFSGLQSS-NLKPDY 322 (502)
Q Consensus 259 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~ 322 (502)
-..|...|...+++.+..++++++... + ...|..=|..|..+.+-.....+|++...- ..-|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 345677777778887777777765431 1 126666777888887777777777776542 234555
Q ss_pred HHHHHHHHHH-----hcCCCHHHHHHHHHHhhhhc---CCCCCh--hHHHHHHHHHHhcCC----HHHHHHHHHhCCCCC
Q 046039 323 ISFIAVLTAC-----NHSGKVNQAKDYFTLMTETY---KIKPSI--KHYSCMVDALGRAGL----LEEAEKLIRSMPSDP 388 (502)
Q Consensus 323 ~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~---~~~~~~--~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~ 388 (502)
.... +++-| .+.|++++|-.-|-+..+.+ |-+... .-|..|...+.+.|- -++|.. ....|
T Consensus 228 lImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNdP 302 (440)
T KOG1464|consen 228 LIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKNDP 302 (440)
T ss_pred HHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCCH
Confidence 4444 34444 35678887765444444422 221111 123444555555441 111110 11135
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAK 414 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~ 414 (502)
.......|+.+|... +..+-.+++.
T Consensus 303 EIlAMTnlv~aYQ~N-dI~eFE~Il~ 327 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNN-DIIEFERILK 327 (440)
T ss_pred HHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 566677788887543 4444333333
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.72 E-value=0.85 Score=37.85 Aligned_cols=64 Identities=20% Similarity=0.147 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRS-MPSDP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
.+.-+..+.+.+++.+|+...+. ++.+| +..+-..++..++-.|++++|..-++-+-++.|+..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34456677788999999988755 44566 555677888999999999999999999999988854
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.07 E-value=3.4 Score=36.54 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=24.5
Q ss_pred CchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhh
Q 046039 103 LARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDE 148 (502)
Q Consensus 103 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 148 (502)
+++.++.++..=++.|+.||..+++.+|+.+.+.+++.+|.++...
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTE 160 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555444433
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.02 E-value=0.25 Score=43.80 Aligned_cols=89 Identities=20% Similarity=0.202 Sum_probs=65.4
Q ss_pred hcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 046039 370 RAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 370 ~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
..|.++.|++.|...... +....|..-..++.+.+++..|++-+..+++++|+...-|-.-+.+..-.|+|.+|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 566777777777666543 344455556667777888888888888888888888877777777777888888888888
Q ss_pred HHhhhcCCccC
Q 046039 448 LLMKEVKIEKE 458 (502)
Q Consensus 448 ~~~~~~~~~~~ 458 (502)
....+.+..+.
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 87777666544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.95 E-value=17 Score=36.38 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=35.5
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-CCchHHHHHH
Q 046039 373 LLEEAEKLIRSMPSDPDAIIWGSLLSACRK----HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS-YQFEEAMEER 447 (502)
Q Consensus 373 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~ 447 (502)
+...|.++|......-....+..+..+|.. ..+...|...++++.+.++ +.....++..+.-. ++++.+.-.+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHH
Confidence 345566666555544333333333333321 2255666666666655552 22222222222211 5555555554
Q ss_pred HHhhhcCC
Q 046039 448 LLMKEVKI 455 (502)
Q Consensus 448 ~~~~~~~~ 455 (502)
..+.+.|.
T Consensus 421 ~~~a~~g~ 428 (552)
T KOG1550|consen 421 LYLAELGY 428 (552)
T ss_pred HHHHHhhh
Confidence 44444433
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.89 E-value=3.6 Score=38.63 Aligned_cols=122 Identities=18% Similarity=0.186 Sum_probs=79.9
Q ss_pred HhcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 046039 298 AMNGYENEAIK-LFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEE 376 (502)
Q Consensus 298 ~~~g~~~~a~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 376 (502)
...|+...|-+ ++.-++...-.|+...+...+ ....|+++.+.+.+..... -+.....+..++++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34566666655 444444444445555444443 4567888888888877654 344456677778888888889999
Q ss_pred HHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046039 377 AEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 377 A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
|..+-..|... .++.............|-++++...|++++.++|+.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 88888777653 344444444444556677888888888888877653
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.78 E-value=0.75 Score=26.70 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
.++..|+.+|...|++++|+.++++....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788999999999999999999988653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=88.71 E-value=17 Score=32.48 Aligned_cols=120 Identities=8% Similarity=0.010 Sum_probs=52.1
Q ss_pred HhCCChHHHHHHHHHHHHCC--CCCCHHH-----HHHHHHHHhccC-chHHHHHHHHHHHHc----C----CCCc-----
Q 046039 197 VRNVKFKEALELFREMQEQN--IKPSEFT-----MVSLLNACAKLG-AIRQGEWIHNFLVTN----C----FELN----- 255 (502)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~--~~~~~~~-----~~~ll~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~----- 255 (502)
.+.|+.+.|..++.+..... ..|+... +-.........+ +++.|...+++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35666777777766654422 1222111 111222223344 666666655554432 1 1111
Q ss_pred hhHHHHHHHHHHhcCChHH---HHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046039 256 TIVVTAIIDMYCKCGCPER---ALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS 316 (502)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (502)
..++..++.+|...+..+. |..+++.+.. ..+..+..-+..+.+.++.+.+.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 2334455555555554332 3333333321 11223333344444455555555555555553
|
It is also involved in sporulation []. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.70 E-value=29 Score=35.13 Aligned_cols=101 Identities=8% Similarity=0.058 Sum_probs=56.2
Q ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCC---chhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCH
Q 046039 95 FKAYAQLGLARDGAQLHGRVVKQGLEF---DQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEI 171 (502)
Q Consensus 95 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 171 (502)
++.+.+.+.+++|+...+.... ..| -......++..+...|++++|-...-.|. ..+..-|.-.+..+...++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~-gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML-GNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh-cchHHHHHHHHHHhcccccc
Confidence 4555666677777766554433 222 23455667777777888888777666665 44445555555555555544
Q ss_pred HHHHHHHHccCC-CChhhHHHHHHHHHh
Q 046039 172 DESRRLFDKMVS-RNTVSWNSMISGYVR 198 (502)
Q Consensus 172 ~~a~~~~~~~~~-~~~~~~~~l~~~~~~ 198 (502)
.....++-.-.. -++..|..++..+..
T Consensus 440 ~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 440 TDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred chhhccCCCCCcccCchHHHHHHHHHHH
Confidence 433222222111 245567777766665
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.62 E-value=3.3 Score=34.27 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=52.8
Q ss_pred HHhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CC---CcchHHHHHHHHHhcCCc
Q 046039 368 LGRAGLLEEAEKLIRSMPSDP---DAIIWGSLLSACRKHGNIEMAKQAAKQIIELD-KN---ESCGYVLMSNLYAASYQF 440 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~---~~~~~~~l~~~~~~~g~~ 440 (502)
+.+.|+ +.|.+.|-.+...| ++.....|+ .|....+.++++.++-+++++. |+ |+.++..|+.+|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445555 56666666665543 344444444 4455778999999999999854 22 678899999999999999
Q ss_pred hHHH
Q 046039 441 EEAM 444 (502)
Q Consensus 441 ~~A~ 444 (502)
++|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8884
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.41 E-value=19 Score=32.51 Aligned_cols=47 Identities=6% Similarity=0.280 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHh--CC----ChhHHHHHHhhcCC
Q 046039 105 RDGAQLHGRVVKQGLEFDQFIHNTIIYMYAN--CG----FLSEARLMFDEVDT 151 (502)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~ 151 (502)
++.+.+++.+.+.|+..+..++.+..-.... .. ...+|..+|+.|.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk 131 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKK 131 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 4456677777777777766665543333322 11 23445566666553
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.53 E-value=19 Score=31.71 Aligned_cols=60 Identities=15% Similarity=0.025 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
++......|..+|.+.+|.++.++++.++|-+.+.+..|...+...|+--.|.+-+.++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344456788999999999999999999999999999999999999999888888777764
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.43 E-value=20 Score=36.06 Aligned_cols=189 Identities=14% Similarity=0.157 Sum_probs=93.7
Q ss_pred HHHHHHHHcCCCC---chhHHHHHHHHHHhcCChHHHHHHHhcCCCC----------Ccc-hHHHHHHHHHhcCChHHHH
Q 046039 242 WIHNFLVTNCFEL---NTIVVTAIIDMYCKCGCPERALQVFNTVPKK----------GLS-CWNSMVFGLAMNGYENEAI 307 (502)
Q Consensus 242 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~l~~~~~~~g~~~~a~ 307 (502)
.++.+|.+.--.| .+.+...++-.|....+++...++.+.+.+. ++. .|.-.++--.+.|+-++|+
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL 263 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKAL 263 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHH
Confidence 3455555432222 2445555666666667777766666655431 111 2222222223456777777
Q ss_pred HHHHHHHHCC--CCCCHHH-----HHHHH--HHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcC-CHHHH
Q 046039 308 KLFSGLQSSN--LKPDYIS-----FIAVL--TACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAG-LLEEA 377 (502)
Q Consensus 308 ~~~~~~~~~~--~~p~~~~-----~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A 377 (502)
...-.+.+.. +.||... |.-+. +.|...+..+.|.++|++.. .+.|+...--.+...+...| .++..
T Consensus 264 ~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fens 340 (1226)
T KOG4279|consen 264 NTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFENS 340 (1226)
T ss_pred HHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhccch
Confidence 7666665532 3455422 22221 22444566777888887765 44554332222222222222 22222
Q ss_pred HHH------HHhCCC-CCC---HH-HH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 378 EKL------IRSMPS-DPD---AI-IW--GSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 378 ~~~------~~~~~~-~~~---~~-~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
.++ +..+.. +.. .. .| .....+-.-.+++.+|++..+.|.+++|+....-..+...
T Consensus 341 ~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni 409 (1226)
T KOG4279|consen 341 LELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENI 409 (1226)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHH
Confidence 221 111111 111 11 11 1233344557899999999999999999877655555443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.24 E-value=0.53 Score=37.08 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=32.0
Q ss_pred HHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 046039 228 LNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFN 280 (502)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 280 (502)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++...+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44455556666666666666655545556666666777776666666666666
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.87 E-value=13 Score=32.78 Aligned_cols=112 Identities=10% Similarity=0.004 Sum_probs=0.0
Q ss_pred hhHHHHHhc--cCCC---CCcchHHHHHHHHhc--CCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHH
Q 046039 37 INYAYLVFT--QIKK---PNLFIWNTIIRGFSQ--SSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQ 109 (502)
Q Consensus 37 ~~~A~~~~~--~~~~---~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 109 (502)
+.+|+++|+ ...+ .|...-..+++.... +.....-.++.+-+....+..++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHHHHHh-CCCCchhHHHHHHHHHHhCCChhHHHHHHhh
Q 046039 110 LHGRVVKQ-GLEFDQFIHNTIIYMYANCGFLSEARLMFDE 148 (502)
Q Consensus 110 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 148 (502)
+++..... ++..|...|...++.....||..-...+.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=86.16 E-value=2.4 Score=30.07 Aligned_cols=51 Identities=12% Similarity=0.067 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCCc
Q 046039 390 AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN--ESCGYVLMSNLYAASYQF 440 (502)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~ 440 (502)
...-..+...+...|+++.|++.+-.+++.+|+ +...-..|..++.-.|.-
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 344444555555555555555555555554433 234444555555555543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.14 E-value=1.1 Score=36.15 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC-----------chHHHHHHHHhhhc
Q 046039 406 IEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQ-----------FEEAMEERLLMKEV 453 (502)
Q Consensus 406 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~ 453 (502)
+++|+.-|++++.++|+...++..++.+|...+. +++|..+|++..+.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 4677888888889999999999999999887544 45555555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=84.89 E-value=60 Score=34.88 Aligned_cols=92 Identities=10% Similarity=-0.084 Sum_probs=41.5
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 356 PSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
++...-...+.++.+.|..+.+...+..+..+++..+-...+.++...+. +++...+..+++ +| +..+....+.++.
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-D~-~~~VR~~A~~aL~ 863 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT-DP-HLDVRKAAVLALT 863 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc-CC-CHHHHHHHHHHHh
Confidence 34455555556666666554443444444444554444445555555543 234444444432 22 2334444444444
Q ss_pred hcCCchHHHHHHHHh
Q 046039 436 ASYQFEEAMEERLLM 450 (502)
Q Consensus 436 ~~g~~~~A~~~~~~~ 450 (502)
+.+.-..+...+..+
T Consensus 864 ~~~~~~~a~~~L~~a 878 (897)
T PRK13800 864 RWPGDPAARDALTTA 878 (897)
T ss_pred ccCCCHHHHHHHHHH
Confidence 432223444444433
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.83 E-value=3.8 Score=36.58 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC----C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPSD----P--DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
.|.-=.+-|.+..++..|...|.+-... | +...|+.-..+-.-.||+..|+.-..+++.++|.+...+..=+.|
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444556678888999999999776542 4 455788777788889999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHh
Q 046039 434 YAASYQFEEAMEERLLM 450 (502)
Q Consensus 434 ~~~~g~~~~A~~~~~~~ 450 (502)
+....++++|....++.
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999988887765554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.81 E-value=11 Score=31.29 Aligned_cols=78 Identities=14% Similarity=0.039 Sum_probs=52.3
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC---CCCchhHHHHHHHHHHhcCChH
Q 046039 197 VRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC---FELNTIVVTAIIDMYCKCGCPE 273 (502)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~ 273 (502)
.+.|+ +.|.+.|-.+...+.--++.....+.. |....+.+++..++....+.. -.+|+..+..|+..|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33343 667777777777765555555555444 444667888888887776532 2567888888888888888887
Q ss_pred HHH
Q 046039 274 RAL 276 (502)
Q Consensus 274 ~A~ 276 (502)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 764
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.76 E-value=21 Score=29.49 Aligned_cols=90 Identities=12% Similarity=0.069 Sum_probs=51.3
Q ss_pred HHHHhccCchHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcch--HHHHHHHHHhcCCh
Q 046039 228 LNACAKLGAIRQGEWIHNFLVTNCFELN--TIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSC--WNSMVFGLAMNGYE 303 (502)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~g~~ 303 (502)
...+...|++++|...++.........+ ..+--.|.+.....|.+++|+..++....++-.. ...-.+.+...|+-
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 3445566677777766666554321111 1122234555666777777777777766654332 33344566677777
Q ss_pred HHHHHHHHHHHHCC
Q 046039 304 NEAIKLFSGLQSSN 317 (502)
Q Consensus 304 ~~a~~~~~~~~~~~ 317 (502)
++|..-|++..+.+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 77777777766654
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.68 E-value=2.8 Score=40.36 Aligned_cols=98 Identities=17% Similarity=0.096 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 046039 335 SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQA 412 (502)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 412 (502)
.|+...|...+....-......+ .....|...+.+.|...+|-.++.+... ...+.++..+++++....+.++|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 36667777766665432111112 2233455666667777777777655432 23445677788888888888888888
Q ss_pred HHHHHhcCCCCcchHHHHHHH
Q 046039 413 AKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 413 ~~~~~~~~p~~~~~~~~l~~~ 433 (502)
|+.+++++|+++..-..|..+
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHH
Confidence 888888888888777666544
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=84.67 E-value=1.7 Score=22.81 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
..+..++.++...|++++|...++...+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999888754
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=84.52 E-value=8.2 Score=32.83 Aligned_cols=63 Identities=19% Similarity=0.081 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCHH-------HHHHHHHHHHhcC--C----CCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 392 IWGSLLSACRKHGNIE-------MAKQAAKQIIELD--K----NESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~-------~A~~~~~~~~~~~--p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
.+..+.+.|...|+.+ .|.+.|+++.+.. | +...+...+|.+..+.|++++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 5566677777777754 4444555554422 2 234678889999999999999999999887654
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.30 E-value=31 Score=32.94 Aligned_cols=102 Identities=16% Similarity=0.092 Sum_probs=56.8
Q ss_pred HHHhcCChHHHHHHHhcCC---CCC---------cchHHHHHHHHHhcCChHHHHHHHHHHHH-------CCCCCCH---
Q 046039 265 MYCKCGCPERALQVFNTVP---KKG---------LSCWNSMVFGLAMNGYENEAIKLFSGLQS-------SNLKPDY--- 322 (502)
Q Consensus 265 ~~~~~g~~~~A~~~~~~~~---~~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~p~~--- 322 (502)
.+.-.|++.+|.+++...- .++ ...||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3445677777777665322 111 11456666666666666666666655543 3444321
Q ss_pred --------HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 046039 323 --------ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALG 369 (502)
Q Consensus 323 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (502)
.+|+. .-.+...|++-.|.+.|..... -+..++..|-.|..+|.
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
Confidence 22332 2235566777777777777766 34556666766766654
|
|
| >KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.15 E-value=33 Score=31.32 Aligned_cols=111 Identities=7% Similarity=0.042 Sum_probs=53.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCc----ccHHHHHHHHHhcCCchhHHHHHHHHHH----hCCCCchhH
Q 046039 54 IWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQR----LTYPSLFKAYAQLGLARDGAQLHGRVVK----QGLEFDQFI 125 (502)
Q Consensus 54 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~ 125 (502)
+++.+..++.+.+.+...+.+..+.... ..|.. .....++..+.+.+++..+...++.-+. .+...++..
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k--~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~ 181 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDK--MQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKY 181 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHH--hccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHH
Confidence 3455556666666665554444444332 22222 2334455666677777666655543221 111112211
Q ss_pred H-HHHH---HHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHH
Q 046039 126 H-NTII---YMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLA 166 (502)
Q Consensus 126 ~-~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 166 (502)
+ ..+. -.|...++++.|+-+|.....-|....-...+.+|.
T Consensus 182 fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~Pa~~vs~~hlEaYk 226 (422)
T KOG2582|consen 182 FLLYLYYGGMICIGLKRFERALYLLEICVTTPAMAVSHIHLEAYK 226 (422)
T ss_pred HHHHHHhcceeeeccccHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 1 1111 123345688888888887765554444334444433
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=84.11 E-value=2.7 Score=22.50 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 404 GNIEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 404 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
|+.+.|..+|++++...|.++.+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788999999999988988888877764
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.91 E-value=2.1 Score=25.43 Aligned_cols=27 Identities=19% Similarity=0.026 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 428 VLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 457788888888888888888887544
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.99 E-value=21 Score=28.05 Aligned_cols=51 Identities=10% Similarity=-0.025 Sum_probs=25.8
Q ss_pred hcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC
Q 046039 100 QLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT 151 (502)
Q Consensus 100 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 151 (502)
..++++.+..+++.|.-..+. ....-..-...+...|+|++|.++|+++..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 455666666666666543211 122222233344556666666666666654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.48 E-value=8.8 Score=29.40 Aligned_cols=21 Identities=5% Similarity=0.055 Sum_probs=10.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 046039 364 MVDALGRAGLLEEAEKLIRSM 384 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~ 384 (502)
|.-++.+.++++++.++.+.+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHH
Confidence 444445555555555554443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.35 E-value=49 Score=31.91 Aligned_cols=59 Identities=10% Similarity=0.129 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 046039 219 PSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFN 280 (502)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 280 (502)
.|.....+++..+.....+.-++.+..++..-| -+...+..++++|... ..+.-..+++
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWe 122 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWE 122 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHH
Confidence 344444555555555555555555555555543 2334444555555554 3334444444
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=82.11 E-value=11 Score=29.59 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhcCC----CCCCcccHHHHHHHHHhcCC-chhHHHHHHHHHHhCCCCchhHHHHH
Q 046039 55 WNTIIRGFSQSSTPRNAILLFIDMLVTSP----IQPQRLTYPSLFKAYAQLGL-ARDGAQLHGRVVKQGLEFDQFIHNTI 129 (502)
Q Consensus 55 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 129 (502)
.|+++......+++.-.+.+++.+..-.. -..+..+|..++.+.+...- --.+..+|+.+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34444444444455444444444421100 01233455555555544433 23345555555555555555555555
Q ss_pred HHHHHh
Q 046039 130 IYMYAN 135 (502)
Q Consensus 130 ~~~~~~ 135 (502)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555443
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.09 E-value=9.5 Score=28.72 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 046039 306 AIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMV 365 (502)
Q Consensus 306 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 365 (502)
..+-++.+...++.|++......+++|.+.+++..|.++|+.+.. .+.+....|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHH
Confidence 334455566677889999999999999999999999999998876 3344444555444
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=82.03 E-value=22 Score=31.25 Aligned_cols=87 Identities=9% Similarity=0.009 Sum_probs=52.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCK---- 268 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 268 (502)
|.+++..++|.+++.+.-+--+.--+.........|-.|.+.+++..+.++-.......-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5677777788777776655433222223345555566677888887777777666654323333446666666543
Q ss_pred -cCChHHHHHHH
Q 046039 269 -CGCPERALQVF 279 (502)
Q Consensus 269 -~g~~~~A~~~~ 279 (502)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 56777777666
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.02 E-value=12 Score=26.68 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 046039 204 EALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVT 249 (502)
Q Consensus 204 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 249 (502)
++.+-++.+....+.|++....+.+++|.+.+|+..|..+++-+..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555555556677777777777777777777777777766553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat | Back alignment and domain information |
|---|
Probab=81.92 E-value=10 Score=26.52 Aligned_cols=66 Identities=12% Similarity=0.111 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHH
Q 046039 4 LKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAI 72 (502)
Q Consensus 4 ~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 72 (502)
+..+++.+.+.| -.+......+-+.- ...|+.+.|.+++..++ .....|...+.++...|.-.-|.
T Consensus 21 ~~~v~d~ll~~~-ilT~~d~e~I~aa~-~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQG-LLTEEDRNRIEAAT-ENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhc-cccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 456777777777 34455566666554 46688888888888888 67777888888887777655543
|
Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.60 E-value=12 Score=27.06 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046039 204 EALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIID 264 (502)
Q Consensus 204 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (502)
+..+-++.+....+.|++....+.+++|.+.+++..|..+++-+..+. ......|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 344555555556677777777777777777777777777777766543 222225554443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=81.42 E-value=5.6 Score=28.52 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=34.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC---------cchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 400 CRKHGNIEMAKQAAKQIIELDKNE---------SCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 400 ~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
..+.|++..|.+.+.+..+....+ ......++.++...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346777777777777666522111 12345566677788888888888877764
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.00 E-value=23 Score=31.67 Aligned_cols=100 Identities=11% Similarity=0.093 Sum_probs=68.8
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 046039 251 CFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS------CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYIS 324 (502)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 324 (502)
|.+....+...++..-....+++.++..+-++...--. +-.+.+..+ ..-++++++.++..=++.|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 33444445555555555567778888777666542111 112222322 33466788888888889999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
++.+++.+.+.+++.+|.++.-.|+..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999988877664
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=80.36 E-value=22 Score=26.63 Aligned_cols=61 Identities=20% Similarity=0.150 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCcc----hHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 390 AIIWGSLLSACRKHGNIEMAKQAAKQIIE-------LDKNESC----GYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
..++..|..++...|++++++...++++. ++.+.-. +...-+.++...|+.++|...|+..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34455666777777877777666666553 4444332 3444556778889999999888764
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=80.24 E-value=16 Score=27.94 Aligned_cols=42 Identities=14% Similarity=0.077 Sum_probs=33.4
Q ss_pred HHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 046039 408 MAKQAAKQIIE--LDKNESCGYVLMSNLYAASYQFEEAMEERLL 449 (502)
Q Consensus 408 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 449 (502)
.+.++|+.|.+ +.-..+.+|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888876 5566777888888888889999999888875
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.1 bits (167), Expect = 2e-12
Identities = 37/284 (13%), Positives = 81/284 (28%), Gaps = 7/284 (2%)
Query: 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFL 247
+ + R + + A L ++ P E + LL ++ +
Sbjct: 59 ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH 118
Query: 248 VTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG-------LSCWNSMVFGLAMN 300
+ A A + + L +N+++ G A
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 301 GYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKH 360
G E + + ++ + L PD +S+ A L + + +K
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 361 YSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420
+ ++ RA +L+ K+ + P + R + K + L
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
Query: 421 KNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLI 464
+ + A+ + L KEVK ++ +L
Sbjct: 299 TLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLR 342
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.1 bits (141), Expect = 2e-09
Identities = 9/89 (10%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 154 DVVAWNSMIIGLAKCGEIDESRRLFDKMVSR-------NTVSWNSMISGYVRNVKFKEAL 206
+ ++ + L + +N+++ G+ R FKE +
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 207 ELFREMQEQNIKPSEFTMVSLLNACAKLG 235
+ +++ + P + + L +
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.3 bits (126), Expect = 2e-07
Identities = 26/268 (9%), Positives = 75/268 (27%), Gaps = 21/268 (7%)
Query: 84 IQPQRLTYPSLFKAYAQLG---LARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLS 140
+ Q+ + FK LA +H ++ ++N ++ +A G
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 141 EARLMFDEVDT---EFDVVAWNSMIIGLAKCGEIDES-RRLFDKMVSRNT----VSWNSM 192
E + V D++++ + + + + + + R ++M + +
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242
Query: 193 ISGYVRNVKFKEALELFREMQEQNIKPSEFT----MVSLLNACAKLGAIRQGEWIHNFLV 248
+S R K ++ P + + ++ + +
Sbjct: 243 LSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302
Query: 249 TNCFELNT-IVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAI 307
+L+ + + K P + ++ K W +
Sbjct: 303 LFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLER 362
Query: 308 KLFSGLQS-----SNLKPDYISFIAVLT 330
+++ G S L + + +
Sbjct: 363 EVYEGRFSLYPFLCLLDEREVVRMLLQV 390
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 6e-10
Identities = 75/540 (13%), Positives = 158/540 (29%), Gaps = 142/540 (26%)
Query: 10 HLIKTGLAKDPIAASRIL--AFCTSPAGDINYAYLVFTQIKKPNL-FIWNTIIRGFSQSS 66
H+I +KD ++ + L + ++ + N F+ + I Q S
Sbjct: 53 HIIM---SKDAVSGTLRLFWTLLSKQE---EMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 67 TPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIH 126
+ D L Q +A+ ++R Q + ++Q L +
Sbjct: 107 MMTRMYIEQRDRLYNDN-QV-----------FAKYNVSR--LQPY-LKLRQALLELRPAK 151
Query: 127 NTIIY-MYANCG--FLSEARLMFDEVDTEFDV-VAWNSMIIGLAKCGEIDES----RRLF 178
N +I + G +++ + +V + D + W + L C + ++L
Sbjct: 152 NVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKIFW----LNLKNCNSPETVLEMLQKLL 206
Query: 179 DKMVSRNTVSWNSMISGYVRNVKFKEAL-ELFREMQEQNIKPSEFTMVSLLNACAKLGAI 237
++ T + + +R + L L + +N LL L +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---------CLL----VLLNV 253
Query: 238 RQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS--CWNSMVF 295
+ + + F + +C ++ T R QV + + + +
Sbjct: 254 QNAKAWNAFNL-SC---KILLTT-------------RFKQVTDFLSAATTTHISLDHHSM 296
Query: 296 GLAMNGYENEAIKLFS---GLQSSNLK-------PDYISFIAVLTACNHSGKVNQAKDYF 345
L +E L + +L P +S IA + ++
Sbjct: 297 TL----TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI----RDGLATWDNWK 348
Query: 346 TLMTETYK--IKPSIKHYSCMVDALGRAGLLEEAEKLIRSM-------PSD---PD---A 390
+ + I+ S+ LE AE R M P P +
Sbjct: 349 HVNCDKLTTIIESSLNV-------------LEPAE--YRKMFDRLSVFPPSAHIPTILLS 393
Query: 391 IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEE--AMEERL 448
+IW ++ + + + K ++E ES + S + E A+ +
Sbjct: 394 LIWFDVIKSDVM---VVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYALHRSI 449
Query: 449 LMKEVKIEKEP--GCSLIEVDGEVHEFVAGGRLHPKA----------PEVYLLLNDLGLL 496
+ + +D + + H K V+L D L
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIG---HHLKNIEHPERMTLFRMVFL---DFRFL 503
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 8e-07
Identities = 61/365 (16%), Positives = 130/365 (35%), Gaps = 50/365 (13%)
Query: 97 AYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFD---EVDTEF 153
+ Q A +KQ + ++ + +Y G L EA + + +F
Sbjct: 42 IHFQCRRLDRSAHFSTLAIKQNPLLAEA-YSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100
Query: 154 DVVAWNSMIIGLAKCGEIDESRRLFDKMVSRN---TVSWNSMISGYVRNVKFKEALELFR 210
+ + ++ L G+++ + + + + N + + + + +EA +
Sbjct: 101 -IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159
Query: 211 EMQEQNIKPSEFTMVSLLNACAKLGAI--RQGEW---IHNFLVTNCFELNTIVVTAIIDM 265
+ E +P + A + LG + QGE IH+F L+ + A I++
Sbjct: 160 KAIE--TQP------NFAVAWSNLGCVFNAQGEIWLAIHHF--EKAVTLDPNFLDAYINL 209
Query: 266 ---YCKCGCPERALQVFNTVPKKGLS-------CWNSMVFGLAMNGYENEAIKLFSGLQS 315
+ +RA+ + + LS ++ G + AI + ++
Sbjct: 210 GNVLKEARIFDRAVAAYL----RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR--RA 263
Query: 316 SNLKPDYISFIAVL-TACNHSGKVNQAKDYFTLMTETYKIKPSIKH-YSCMVDALGRAGL 373
L+P + L A G V +A+D + ++ P+ + + + G
Sbjct: 264 IELQPHFPDAYCNLANALKEKGSVAEAEDCY---NTALRLCPTHADSLNNLANIKREQGN 320
Query: 374 LEEA----EKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVL 429
+EEA K + P A +L S ++ G ++ A K+ I + + Y
Sbjct: 321 IEEAVRLYRKALEVFPEFAAA--HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 378
Query: 430 MSNLY 434
M N
Sbjct: 379 MGNTL 383
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 4e-06
Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 13/148 (8%)
Query: 304 NEAIKLFSGLQSSNLKPDYISFIAVL-TACNHSGKVNQAKDYFTLMTETYKIKPSIKH-Y 361
A + Q +PD + +L + +++++ + T K P + Y
Sbjct: 16 EAAERHCM--QLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST---LAIKQNPLLAEAY 70
Query: 362 SCMVDALGRAGLLEEA----EKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQII 417
S + + G L+EA +R P D + +L +A G++E A QA +
Sbjct: 71 SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG--YINLAAALVAAGDMEGAVQAYVSAL 128
Query: 418 ELDKNESCGYVLMSNLYAASYQFEEAME 445
+ + + C + NL A + EEA
Sbjct: 129 QYNPDLYCVRSDLGNLLKALGRLEEAKA 156
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 47/329 (14%), Positives = 103/329 (31%), Gaps = 61/329 (18%)
Query: 133 YANCGFLSEARLMFDEVDTEFD---VVAWNSMIIGLAKCGEIDESRRLFDKMVS---RNT 186
G A ++ + + +C +D S +
Sbjct: 9 EYQAGDFEAAERHCMQL-WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA 67
Query: 187 VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNF 246
+++++ + Y + +EA+E +R +KP ++ L A
Sbjct: 68 EAYSNLGNVYKERGQLQEAIEHYRHALR--LKPD------FIDGYINLAAA--------- 110
Query: 247 LVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTV----PKKGLSCWNSMVFGLAMNGY 302
G E A+Q + + P + + L G
Sbjct: 111 -------------------LVAAGDMEGAVQAYVSALQYNPDL-YCVRSDLGNLLKALGR 150
Query: 303 ENEAIKLFSGLQSSNLKPDYISFIAVL-TACNHSGKVNQAKDYFTLMTETYKIKPS-IKH 360
EA + ++ +P++ + L N G++ A +F + + P+ +
Sbjct: 151 LEEAKACYL--KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE---KAVTLDPNFLDA 205
Query: 361 YSCMVDALGRAGLLEEA----EKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQI 416
Y + + L A + + A + + P+ G+L + G I++A ++
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV--HGNLACVYYEQGLIDLAIDTYRRA 263
Query: 417 IELDKNESCGYVLMSNLYAASYQFEEAME 445
IEL + Y ++N EA +
Sbjct: 264 IELQPHFPDAYCNLANALKEKGSVAEAED 292
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 46/316 (14%), Positives = 113/316 (35%), Gaps = 45/316 (14%)
Query: 154 DVVAWNSMIIGLAKCGEIDESRRLFDKMVSRN---TVSWNSMISGYVRNVKFKEALELFR 210
A++++ + G++ E+ + + + ++ + V + A++ +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 211 EMQEQNIKPSEFTMVSLLNACAKLGAI--RQGEW---IHNFLVTNCFELNTIVVTAIIDM 265
+ P L + LG + G + E A ++
Sbjct: 126 SALQ--YNP------DLYCVRSDLGNLLKALGRLEEAKACY--LKAIETQPNFAVAWSNL 175
Query: 266 ---YCKCGCPERALQVFNTVPKKGLS-------CWNSMVFGLAMNGYENEAIKLFSGLQS 315
+ G A+ F K ++ + ++ L + A+ + ++
Sbjct: 176 GCVFNAQGEIWLAIHHFE----KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL--RA 229
Query: 316 SNLKPDYISFIAVL-TACNHSGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGL 373
+L P++ L G ++ A D + E ++P Y + +AL G
Sbjct: 230 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGS 286
Query: 374 LEEAE----KLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVL 429
+ EAE +R P+ D+ +L + R+ GNIE A + ++ +E+ + +
Sbjct: 287 VAEAEDCYNTALRLCPTHADS--LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344
Query: 430 MSNLYAASYQFEEAME 445
++++ + +EA+
Sbjct: 345 LASVLQQQGKLQEALM 360
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 35/309 (11%), Positives = 71/309 (22%), Gaps = 31/309 (10%)
Query: 154 DVVAWNSMIIGLAKCGEIDESRRLFDK---MVSRNTVSWNSMISGYVRNVKFKEALELFR 210
VVA S G + + + + + V+ S G + L +
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 130
Query: 211 EMQEQNIKPSEF-TMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDM---Y 266
Q + P + + S L ++ + L V AI
Sbjct: 131 --QAHGLTPEQVVAIASHDGGKQALETVQAL--LPVL--CQAHGLTPEQVVAIASNGGGK 184
Query: 267 CKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYI 323
+R L V + + S G + + Q+ L P +
Sbjct: 185 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQV 242
Query: 324 SFIAVL-TACNHSGKVNQA-KDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEA--- 377
IA V + + + + P + + ++
Sbjct: 243 VAIASNGGGKQALETVQRLLPVL----CQAHGLTPQQVVAIASNSGGKQALETVQRLLPV 298
Query: 378 -EKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA 436
+ P A S + ++ Q L + A
Sbjct: 299 LCQAHGLTPQQVVA--IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQA 356
Query: 437 SYQFEEAME 445
+ +
Sbjct: 357 LETVQRLLP 365
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 36/338 (10%), Positives = 73/338 (21%), Gaps = 38/338 (11%)
Query: 133 YANCGFLSEARLMFDEVDTEFD---------VVAWNSMIIGLAKCGEIDESRRLFDKMVS 183
A+ +A + VVA S G + + +
Sbjct: 109 IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHG 168
Query: 184 RN---TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQG 240
V+ S G + L + + + + S L
Sbjct: 169 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV-AIASNGGGKQALE--TVQ 225
Query: 241 EWIHNFLVTNCFELNTIVVTAIIDM---YCKCGCPERALQVFNTV----PKKGLSCWNSM 293
+ L V AI +R L V P++ ++ S
Sbjct: 226 RLLPVL--CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA-IASN 282
Query: 294 VFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVL-TACNHSGKVNQAKDYFTLMTETY 352
G + + Q+ L P + IA V + + +
Sbjct: 283 SGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC---QAH 337
Query: 353 KIKP-SIKHYSCMVDALGRAGLLEEA----EKLIRSMPSDPDAIIWGSLLSACRKHGNIE 407
+ P + + ++ + P A S + ++
Sbjct: 338 GLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA--IASNGGGKQALETVQ 395
Query: 408 MAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445
Q L + A + +
Sbjct: 396 RLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLP 433
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 7e-06
Identities = 42/390 (10%), Positives = 87/390 (22%), Gaps = 48/390 (12%)
Query: 85 QPQRLTYPSLFKAYAQLGLARDGAQLH---GRVVKQGLEF---DQFIHNTIIYMYANCGF 138
P +L A+ G +H + L +
Sbjct: 29 PPLQLD-TGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALET 87
Query: 139 LSEARLMFD---EVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNT---VSWNSM 192
+ + + + VVA S G + + + V+ S
Sbjct: 88 VQRLLPVLCQAHGLTPQ-QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 146
Query: 193 ISGYVRNVKFKEALELFREMQEQNIKPSEF-TMVSLLNACAKLGAIRQGEWIHNFLVTNC 251
G + L + Q + P + + S L ++ +
Sbjct: 147 DGGKQALETVQALLPVLC--QAHGLTPEQVVAIASNGGGKQALETVQ--RLLPVL--CQA 200
Query: 252 FELNTIVVTAIIDM---YCKCGCPERALQVFNTV----PKKGLSCWNSMVFGLAMNGYEN 304
L V AI +R L V P++ ++ S G
Sbjct: 201 HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA-IASNGGGKQALETVQ 259
Query: 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETY----KIKP-SIK 359
+ + Q+ L P + A + QA + + + P +
Sbjct: 260 RLLPVLC--QAHGLTPQQV------VAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVV 311
Query: 360 HYSCMVDALGRAGLLEEA----EKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQ 415
+ ++ + P A S + ++ Q
Sbjct: 312 AIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA--IASHDGGKQALETVQRLLPVLCQ 369
Query: 416 IIELDKNESCGYVLMSNLYAASYQFEEAME 445
L + A + +
Sbjct: 370 AHGLTPEQVVAIASNGGGKQALETVQRLLP 399
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 43/383 (11%), Positives = 85/383 (22%), Gaps = 47/383 (12%)
Query: 92 PSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFI---------HNTIIYMYANCGFLSEA 142
P A A + Q V + Q + +
Sbjct: 103 PQQVVAIASHDGGK---QALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQAL 159
Query: 143 RLMFD---EVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMV---SRNTVSWNSMISGY 196
+ + E VVA S G + + + + V+ S G
Sbjct: 160 LPVLCQAHGLTPE-QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 218
Query: 197 VRNVKFKEALELFREMQEQNIKPSEF-TMVSLLNACAKLGAIRQGEWIHNFLVTNCFELN 255
+ L + Q + P + + S L ++ + L
Sbjct: 219 QALETVQRLLPVLC--QAHGLTPQQVVAIASNGGGKQALETVQ--RLLPVL--CQAHGLT 272
Query: 256 TIVVTAIIDM---YCKCGCPERALQVFNTV----PKKGLSCWNSMVFGLAMNGYENEAIK 308
V AI +R L V P++ ++ S G +
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVA-IASNGGGKQALETVQRLLP 331
Query: 309 LFSGLQSSNLKPDYISFIAVL-TACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVD 366
+ Q+ L P + IA V + + + + P + +
Sbjct: 332 VLC--QAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC---QAHGLTPEQVVAIASNGG 386
Query: 367 ALGRAGLLEEA----EKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422
++ + P A S + ++ Q L
Sbjct: 387 GKQALETVQRLLPVLCQAHGLTPEQVVA--IASHDGGKQALETVQRLLPVLCQAHGLTPQ 444
Query: 423 ESCGYVLMSNLYAASYQFEEAME 445
+ A +
Sbjct: 445 QVVAIASNGGGRPALESIVAQLS 467
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 34/314 (10%), Positives = 81/314 (25%), Gaps = 34/314 (10%)
Query: 157 AWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQN 216
A G ++ ++S N + I + K+A+++ E ++
Sbjct: 95 ALLRRASANESLGNFTDAMFDL-SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD 153
Query: 217 IKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE----------------LNTIVVT 260
+ S + + G + + ++ ++ + +
Sbjct: 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV 213
Query: 261 AIIDMYCKCGCPERALQVFNTV----PKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS 316
A + L L+ + +F N +A L +S
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL-DAQVLLQ--ESI 270
Query: 317 NLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGLLE 375
NL P S+I + + +F + + P Y +
Sbjct: 271 NLHPTPNSYIFLALTLADKENSQEFFKFFQ---KAVDLNPEYPPTYYHRGQMYFILQDYK 327
Query: 376 EA----EKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431
A +K P + + L K G ++ + +
Sbjct: 328 NAKEDFQKAQSLNPENVYP--YIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA 385
Query: 432 NLYAASYQFEEAME 445
+ F+ A++
Sbjct: 386 EILTDRGDFDTAIK 399
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 31/298 (10%), Positives = 82/298 (27%), Gaps = 30/298 (10%)
Query: 154 DVVAWNSMIIGLAKCGEIDESRRLFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFR 210
+ V ++++ G++++ K + ++ + S F +A+
Sbjct: 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL- 116
Query: 211 EMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCG 270
+ N ++ +L A++ + +
Sbjct: 117 SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGR-----------GSQVLPSNT 165
Query: 271 CPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFS-GLQSSNLKPDYISFIAVL 329
+F++ + V + + + A L S LQ D +A
Sbjct: 166 SLASFFGIFDSHLE---------VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAND 216
Query: 330 TACNHSGKVNQAKDYFTLMTETYKIKPSIKH-YSCMVDALGRAGLLEEAEKLI-RSMPSD 387
+ + T ++ + L +A+ L+ S+
Sbjct: 217 LLTKSTDMYHSLLSANT---VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273
Query: 388 PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445
P + L N + + ++ ++L+ Y +Y ++ A E
Sbjct: 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 20/156 (12%), Positives = 49/156 (31%), Gaps = 11/156 (7%)
Query: 296 GLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVL-TACNHSGKVNQAKDYFTLMTETYKI 354
L +E+E + L S N + + T + +I
Sbjct: 278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITT---KILEI 334
Query: 355 KP-SIKHYSCMVDALGRAGLLEEA----EKLIRSMPSDPDAIIWGSLLSACRKHGNIEMA 409
P ++ Y + +L +G + L+ P W ++ I A
Sbjct: 335 DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT--WLAVGIYYLCVNKISEA 392
Query: 410 KQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445
++ + +D ++ ++ +A + ++A+
Sbjct: 393 RRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS 428
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 38/347 (10%), Positives = 96/347 (27%), Gaps = 65/347 (18%)
Query: 120 EFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFD-VVAWNSMIIGLAKCGEIDESRRLF 178
F + ++ + ++ L A ++ L + +
Sbjct: 269 AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAIT 328
Query: 179 DKMVSR---NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG 235
K++ N + ++ + + + + ++ + P + +G
Sbjct: 329 TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKA------VTWLAVG 380
Query: 236 AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTV----PKKGLSCWN 291
Y A + F+ P+ G W
Sbjct: 381 IY----------------------------YLCVNKISEARRYFSKSSTMDPQFG-PAWI 411
Query: 292 SMVFGLAMNGYENEAIKLFSGLQSSNLKPDYI---SFIAVLTACNHSGKVNQAKDYFTLM 348
A+ G ++AI ++ ++ L F+ + G + A +Y
Sbjct: 412 GFAHSFAIEGEHDQAISAYT--TAARLFQGTHLPYLFLGM--QHMQLGNILLANEYLQ-- 465
Query: 349 TETYKIKPS-IKHYSCMVDALGRAGLLEEAEKL--------IRSMPSDPD-AIIWGSLLS 398
+Y + + + ++ A ++ ++ A W +L
Sbjct: 466 -SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524
Query: 399 ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445
A RK + A A Q + L N++ + ++ +Y A+
Sbjct: 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT 571
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 14/149 (9%), Positives = 39/149 (26%), Gaps = 12/149 (8%)
Query: 304 NEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIK---- 359
+ A + + ++ + L + + + +++ ++ Y
Sbjct: 217 DRAKECYK--EALMVDAKCYEAFDQLVSNH---LLTADEEWDLVLKLNYSTYSKEDAAFL 271
Query: 360 --HYSCMVDALGRAGLLEEAEKLIRSMPSDPD-AIIWGSLLSACRKHGNIEMAKQAAKQI 416
Y ++ L AE + S+ + + +I
Sbjct: 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI 331
Query: 417 IELDKNESCGYVLMSNLYAASYQFEEAME 445
+E+D Y L S + +
Sbjct: 332 LEIDPYNLDVYPLHLASLHESGEKNKLYL 360
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 14/146 (9%), Positives = 39/146 (26%), Gaps = 12/146 (8%)
Query: 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSI-KHYSC 363
A + ++ L P S+I + + +YF + + + Y
Sbjct: 255 GAHEDIK--KAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALK---LDSNNSSVYYH 309
Query: 364 MVDALGRAGLLEEA----EKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419
++A +K P + + L + + + +
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFP--YIQLACLAYRENKFDDCETLFSEAKRK 367
Query: 420 DKNESCGYVLMSNLYAASYQFEEAME 445
+ + F++A++
Sbjct: 368 FPEAPEVPNFFAEILTDKNDFDKALK 393
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 22/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%)
Query: 304 NEAIKLFSGLQSSNLKPDYI-SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP-SIKHY 361
++A K F ++ L P+ I +I + K + + F+ E + P + +
Sbjct: 321 DQAGKDFD--KAKELDPENIFPYIQLACLAYRENKFDDCETLFS---EAKRKFPEAPEVP 375
Query: 362 SCMVDALGRAGLLEEA----EKLIRSMPSDPDA-------IIWGSLLSACRKHGNIEMAK 410
+ + L ++A + I + +LL+ N A
Sbjct: 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435
Query: 411 QAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445
++ +LD + ++ + +EA+
Sbjct: 436 NLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 25/171 (14%), Positives = 56/171 (32%), Gaps = 22/171 (12%)
Query: 290 WNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYI---SFIAVLTACNHSGKVNQAKDYFT 346
W + A+ ++A+ + ++ L +I + + A+ +F+
Sbjct: 128 WIAYGHSFAVESEHDQAMAAYF--TAAQLMKGCHLPMLYIGL--EYGLTNNSKLAERFFS 183
Query: 347 LMTETYKIKPS-IKHYSCMVDALGRAGLLEEAEK-----------LIRSMPSDPDAIIWG 394
+ I P + + G + AEK + + D +
Sbjct: 184 ---QALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240
Query: 395 SLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445
+L CRK A +Q + L + Y + +++ FE A++
Sbjct: 241 NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVD 291
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 21/154 (13%), Positives = 55/154 (35%), Gaps = 20/154 (12%)
Query: 304 NEAIKLFSGLQSSNLKPDY---ISFIAVLTACNHSGKVNQAKDYFTL---MTETYKIKPS 357
A + FS Q+ ++ P+ + + V +G+ A+ +F + + +
Sbjct: 176 KLAERFFS--QALSIAPEDPFVMHEVGV--VAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231
Query: 358 IKHYSCMVDALGRA----GLLEEA----EKLIRSMPSDPDAIIWGSLLSACRKHGNIEMA 409
+ + +++ LG EA + + +P + + ++ GN E A
Sbjct: 232 VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST--YSAIGYIHSLMGNFENA 289
Query: 410 KQAAKQIIELDKNESCGYVLMSNLYAASYQFEEA 443
+ L ++++ ++ + EA
Sbjct: 290 VDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-05
Identities = 7/76 (9%), Positives = 21/76 (27%), Gaps = 6/76 (7%)
Query: 374 LEEA----EKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVL 429
++ E ++ + +L +H + A + ++ D S +
Sbjct: 1 MQAITERLEAMLAQGTDNMLL--RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW 58
Query: 430 MSNLYAASYQFEEAME 445
+ A +
Sbjct: 59 LGKTLQGQGDRAGARQ 74
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 32/203 (15%), Positives = 59/203 (29%), Gaps = 27/203 (13%)
Query: 266 YCKCGCPERALQVFNTV----PKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPD 321
G AL F+ P + + G A+ + + LK D
Sbjct: 36 LLAAGQLADALSQFHAAVDGDPDNYI-AYYRRATVFLAMGKSKAALPDLT--KVIQLKMD 92
Query: 322 YISFIAVL-TACNHSGKVNQAKDYFTL-------MTETYKIKPSIKHYSCMVDALGRA-- 371
+ + GK+++A+D F E + + + M +A
Sbjct: 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN 152
Query: 372 ----GLLEEA----EKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE 423
G A +K++ D + K G A K +L +
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAEL--RELRAECFIKEGEPRKAISDLKAASKLKNDN 210
Query: 424 SCGYVLMSNLYAASYQFEEAMEE 446
+ + +S LY E ++ E
Sbjct: 211 TEAFYKISTLYYQLGDHELSLSE 233
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 30/204 (14%), Positives = 56/204 (27%), Gaps = 29/204 (14%)
Query: 266 YCKCGCPERALQVFNTV----PKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPD 321
G AL F+ P + + G A+ + + LK D
Sbjct: 13 LLAAGQLADALSQFHAAVDGDPDNYI-AYYRRATVFLAMGKSKAALPDLT--KVIALKMD 69
Query: 322 YISFIAVL-TACNHSGKVNQAKDYFT--------------LMTETYKIKPSIKHYSCMVD 366
+ + GK+++A+D F ++ K + S
Sbjct: 70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRS-QAL 128
Query: 367 ALGRAGLLEEA----EKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422
A +K++ D + K G A K +L +
Sbjct: 129 DAFDGADYTAAITFLDKILEVCVWDAEL--RELRAECFIKEGEPRKAISDLKAASKLKSD 186
Query: 423 ESCGYVLMSNLYAASYQFEEAMEE 446
+ + +S LY E ++ E
Sbjct: 187 NTEAFYKISTLYYQLGDHELSLSE 210
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 21/148 (14%), Positives = 47/148 (31%), Gaps = 10/148 (6%)
Query: 304 NEAIKLFSGLQSSNLKPDYISFIAVLTACNHS-GKVNQAKDYFTLMTETYKIKPSIKH-Y 361
EAI++F+ + K + C + K + A+ + +
Sbjct: 20 AEAIEVFN--KLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF 77
Query: 362 SCMVDALGRAGLLEEA----EKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQII 417
L + G A + + + D +G + S GN +A Q ++ I
Sbjct: 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM--YGQIGSYFYNKGNFPLAIQYMEKQI 135
Query: 418 ELDKNESCGYVLMSNLYAASYQFEEAME 445
+ + + Y + ++ +A
Sbjct: 136 RPTTTDPKVFYELGQAYYYNKEYVKADS 163
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 8e-04
Identities = 23/135 (17%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 317 NLKPDYISFIAVL-TACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLL 374
P + + L G + +A + E + P +S + L + G L
Sbjct: 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKL 59
Query: 375 EEAE----KLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLM 430
+EA + IR P+ DA + ++ + ++ +++ A Q + I+++ + + +
Sbjct: 60 QEALMHYKEAIRISPTFADA--YSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNL 117
Query: 431 SNLYAASYQFEEAME 445
++++ S EA+
Sbjct: 118 ASIHKDSGNIPEAIA 132
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 502 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.74 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.74 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.71 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.71 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.71 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.69 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.68 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.68 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.67 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.65 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.63 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.63 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.63 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.63 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.59 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.59 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.58 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.54 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.53 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.51 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.51 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.49 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.49 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.47 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.46 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.46 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.43 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.32 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.31 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.31 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.31 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.27 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.26 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.24 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.24 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.23 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.23 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.22 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.22 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.17 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.17 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.17 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.15 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.15 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.14 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.12 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.12 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.11 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.11 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.09 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.09 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.05 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.05 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.05 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.02 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.02 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.02 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.01 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.01 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.0 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.99 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.99 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.99 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.97 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.97 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.95 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.92 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.91 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.9 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.9 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.9 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.9 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.9 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.88 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.88 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.87 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.87 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.84 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.84 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.84 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.84 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.83 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.82 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.81 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.8 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.8 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.79 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.79 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.79 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.78 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.78 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.76 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.76 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.75 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.74 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.74 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.73 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.73 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.73 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.7 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.7 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.68 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.67 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.65 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.63 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.62 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.62 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.62 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.61 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.59 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.58 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.57 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.55 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.53 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.53 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.52 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.52 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.51 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.49 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.48 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.48 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.48 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.47 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.47 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.46 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.45 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.45 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.43 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.42 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.41 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.4 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.37 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.36 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.33 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.29 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.29 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.27 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.26 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.25 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.24 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.23 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.21 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.2 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.19 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.15 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.11 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.08 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.96 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.96 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.93 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.9 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.9 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.88 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.87 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.68 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.6 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.6 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.58 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.46 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.44 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.39 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.37 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.33 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.29 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.14 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.14 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.05 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.04 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.0 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.88 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.62 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.56 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.46 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.44 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.4 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.02 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.0 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.98 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.9 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.39 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.97 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.97 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.73 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.7 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.42 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.45 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.34 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.01 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 92.86 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.56 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.89 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 91.81 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 91.45 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.31 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 91.22 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.15 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 90.79 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.07 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.35 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.65 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.26 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.99 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 86.34 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.52 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.05 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 84.91 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 83.78 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 83.69 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 83.58 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.94 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=335.95 Aligned_cols=427 Identities=12% Similarity=0.030 Sum_probs=377.0
Q ss_pred CChHHHHHHHHhhhCCCCChhHHHHHhccCCC--CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHH
Q 046039 18 KDPIAASRILAFCTSPAGDINYAYLVFTQIKK--PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLF 95 (502)
Q Consensus 18 p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 95 (502)
++...++.++..+ .+.|++++|..+|+++.. |+..++..++.++.+.|++++|+.+|+.+.. .+++..+++.++
T Consensus 82 ~~~~~~~~~~~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDA-LMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHH
Confidence 6778899999999 899999999999999875 8888999999999999999999999999864 367888999999
Q ss_pred HHHHhcCCchhHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCC-eeeH
Q 046039 96 KAYAQLGLARDGAQLHGRVVKQ---------------GLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EFD-VVAW 158 (502)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-~~~~ 158 (502)
.++.+.|++++|..+|+++... |.+++..+++.++.+|.+.|++++|.+.|+++.. .|+ ...+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999853211 1233578999999999999999999999998864 232 2232
Q ss_pred HHH--------------------------------------HHHHHhcCCHHHHHHHHHccCC--CChhhHHHHHHHHHh
Q 046039 159 NSM--------------------------------------IIGLAKCGEIDESRRLFDKMVS--RNTVSWNSMISGYVR 198 (502)
Q Consensus 159 ~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~ 198 (502)
..+ +..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 222 4456678999999999999977 789999999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 046039 199 NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQV 278 (502)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 278 (502)
.|++++|.++|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..++..++..|.+.|++++|..+
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999876 5578889999999999999999999999999764 56788999999999999999999999
Q ss_pred HhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCC
Q 046039 279 FNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIK 355 (502)
Q Consensus 279 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 355 (502)
|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+.+.+. .+
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 472 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQ 472 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 998754 456799999999999999999999999999874 347789999999999999999999999999874 34
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 356 PSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-------DPD--AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
.+..+|+.++.+|.+.|++++|.++|+++.. .|+ ..+|..++.+|.+.|++++|.+.++++++.+|+++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 5788999999999999999999999998743 566 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 427 YVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+..++.+|.+.|++++|.++++++.+.
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999854
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=318.42 Aligned_cols=427 Identities=9% Similarity=-0.023 Sum_probs=374.0
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCC--CCCcchHHHHHHHHhcCCChHHHHHHHHHhH
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIK--KPNLFIWNTIIRGFSQSSTPRNAILLFIDML 79 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 79 (502)
+.|..+++.+.+ ..|+..++..+...| .+.|++++|..+|+.+. .++..+++.++.+|.+.|++++|+++|+++.
T Consensus 101 ~~A~~~~~~~~~--~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 177 (597)
T 2xpi_A 101 KCAAFVGEKVLD--ITGNPNDAFWLAQVY-CCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETN 177 (597)
T ss_dssp HHHHHHHHHHHH--HHCCHHHHHHHHHHH-HHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC
T ss_pred hHHHHHHHHHHh--hCCCchHHHHHHHHH-HHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccC
Confidence 457788888885 568889998888888 99999999999999985 4889999999999999999999999998644
Q ss_pred hcC--------------CCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHH----------------
Q 046039 80 VTS--------------PIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTI---------------- 129 (502)
Q Consensus 80 ~~~--------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------------- 129 (502)
... +.+++..+|+.++.++.+.|++++|..+|+++.+.++. +...+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~ 256 (597)
T 2xpi_A 178 PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVL 256 (597)
T ss_dssp TTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHH
Confidence 321 22345778999999999999999999999999987633 34443333
Q ss_pred ----------------------HHHHHhCCChhHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC---
Q 046039 130 ----------------------IYMYANCGFLSEARLMFDEVDT-EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS--- 183 (502)
Q Consensus 130 ----------------------~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 183 (502)
+..|.+.|++++|.++|+++.. +++..+|+.++.+|.+.|++++|..+|+++..
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 336 (597)
T 2xpi_A 257 KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP 336 (597)
T ss_dssp HSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc
Confidence 4556678999999999999985 47889999999999999999999999999843
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046039 184 RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAII 263 (502)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (502)
.+..+++.++.++.+.|++++|..+++++.+.. +.+..++..++..+.+.|++++|..+|+++.+.. +.+..+++.++
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 414 (597)
T 2xpi_A 337 YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFA 414 (597)
T ss_dssp TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 477889999999999999999999999998764 6789999999999999999999999999999865 45688999999
Q ss_pred HHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHH
Q 046039 264 DMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQ 340 (502)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 340 (502)
.+|.+.|++++|.++|+++.+ .+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..+.+.|++++
T Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 415 HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 999999999999999998754 356799999999999999999999999999864 3478999999999999999999
Q ss_pred HHHHHHHhhhhc---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 046039 341 AKDYFTLMTETY---KIKPS--IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAA 413 (502)
Q Consensus 341 a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 413 (502)
|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.|+++.. .| +..+|..++.+|.+.|++++|.+.|
T Consensus 494 A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999997642 44666 78999999999999999999999998764 34 7889999999999999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHH
Q 046039 414 KQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 414 ~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
+++++++|+++..+..++.+|.
T Consensus 574 ~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 574 HESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-30 Score=241.14 Aligned_cols=373 Identities=13% Similarity=0.043 Sum_probs=301.9
Q ss_pred HHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 046039 59 IRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGF 138 (502)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 138 (502)
...+.+.|++++|++.++.+.+. .+.+...+..+...+...|++++|...++...+.. +.+..++..+..+|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34556678888888888777764 22233455556666777788888888887777764 4567778888888888888
Q ss_pred hhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 046039 139 LSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS--R-NTVSWNSMISGYVRNVKFKEALELFREMQ 213 (502)
Q Consensus 139 ~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 213 (502)
+++|...|+++.. +.+..+|..+..++.+.|++++|...|+++.. | +...+..+...+...|++++|.+.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888877653 33445677778888888888888888877743 3 44567778888888999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchH
Q 046039 214 EQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCW 290 (502)
Q Consensus 214 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 290 (502)
+.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++..+ .+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 874 5567888889999999999999999999998875 44677888889999999999999999887654 345688
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh
Q 046039 291 NSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR 370 (502)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (502)
..++..+...|++++|+..|+++.+.+. .+..++..+..++...|++++|...++.+.+. .+.+..++..+...+.+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 8899999999999999999999998642 35678889999999999999999999999874 45678889999999999
Q ss_pred cCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046039 371 AGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQ 439 (502)
Q Consensus 371 ~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 439 (502)
.|++++|...++++... | +..++..++.++.+.|++++|...|+++++.+|+++..+..++.++...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999988753 4 577899999999999999999999999999999999999999998887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-30 Score=240.45 Aligned_cols=373 Identities=13% Similarity=0.060 Sum_probs=325.7
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCH
Q 046039 94 LFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEI 171 (502)
Q Consensus 94 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 171 (502)
+...+.+.|++++|...+..+.+.. +.+...+..+...+...|++++|...++.... +.+..+|..+..++.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3456778999999999999999875 44677788888999999999999999987654 55777899999999999999
Q ss_pred HHHHHHHHccCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 046039 172 DESRRLFDKMVS--R-NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLV 248 (502)
Q Consensus 172 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 248 (502)
++|+..|+++.. | +..+|..++.++.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|...|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999843 4 45679999999999999999999999999875 5556677888889999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 046039 249 TNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISF 325 (502)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 325 (502)
+.. +.+..++..+...+...|++++|...|+++.+. ....|..+...+...|++++|+..+++.....+ .+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHH
Confidence 875 446788999999999999999999999987653 345888999999999999999999999988542 357888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc
Q 046039 326 IAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKH 403 (502)
Q Consensus 326 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 403 (502)
..+..++...|++++|...|+.+.+. .+.+...+..++.++.+.|++++|...|+++.. ..+..+|..++..+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999873 344577899999999999999999999998864 34788999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCc
Q 046039 404 GNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKA 483 (502)
Q Consensus 404 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 483 (502)
|++++|...++++++..|+++..+..++.+|.+.|++++|.+.++++.+ .+|+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~ 372 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--------------------------ISPTF 372 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--------------------------TCTTC
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------hCCCC
Confidence 9999999999999999999999999999999999999999999999874 25667
Q ss_pred hHHHHHHHHHHHHHH
Q 046039 484 PEVYLLLNDLGLLIQ 498 (502)
Q Consensus 484 ~~~~~~l~~~~~~~~ 498 (502)
.+.+..+..++..++
T Consensus 373 ~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 373 ADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHhHHHHHHHcc
Confidence 788888888776654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=229.95 Aligned_cols=187 Identities=12% Similarity=0.070 Sum_probs=152.0
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCC---------chhHHHHHHHHHHhCCCCch
Q 046039 53 FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGL---------ARDGAQLHGRVVKQGLEFDQ 123 (502)
Q Consensus 53 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 123 (502)
..++.+|.+|++.|++++|+++|++|.+. |++||..+|+.||.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 35777888888888888888888888887 888888888888888876654 46788888888888888888
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChH
Q 046039 124 FIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFK 203 (502)
Q Consensus 124 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 203 (502)
.+|+.++.+|++.|++++|.++|++|. +.-..||..+|+.+|.+|++.|+++
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~----------------------------~~g~~Pd~~tyn~lI~~~~~~g~~~ 157 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMK----------------------------AFGIQPRLRSYGPALFGFCRKGDAD 157 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH----------------------------HTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----------------------------HcCCCCccceehHHHHHHHHCCCHH
Confidence 888888888888888888888887776 2335677888888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046039 204 EALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCK 268 (502)
Q Consensus 204 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (502)
+|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+.+..|+..+|+.++..|..
T Consensus 158 ~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 158 KAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888888888888888888888777764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=225.51 Aligned_cols=393 Identities=9% Similarity=-0.018 Sum_probs=285.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 046039 54 IWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMY 133 (502)
Q Consensus 54 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 133 (502)
.+......+.+.|++++|+..|+++.+. .|+..++..+..++...|++++|...++.+++.+ +.+..++..+..++
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 3444455555666666666666666554 2455555556666666666666666666665553 23445555566666
Q ss_pred HhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHH-------------------------------------
Q 046039 134 ANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDES------------------------------------- 174 (502)
Q Consensus 134 ~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a------------------------------------- 174 (502)
...|++++|...|+++.. +++......++..+........+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 666666666666655432 12222222222222221111111
Q ss_pred -HHHHHccC---------CC-ChhhHHHHHHHHHh---CCChHHHHHHHHHHHH-----CCC--------CCCHHHHHHH
Q 046039 175 -RRLFDKMV---------SR-NTVSWNSMISGYVR---NVKFKEALELFREMQE-----QNI--------KPSEFTMVSL 227 (502)
Q Consensus 175 -~~~~~~~~---------~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~l 227 (502)
...+.... .| +...+......+.. .|++++|...|+++.+ ..- +.+...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 11111110 01 14445555555554 8999999999999987 311 2235677788
Q ss_pred HHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChH
Q 046039 228 LNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYEN 304 (502)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~ 304 (502)
..++...|++++|...++.+.+.... ..++..+..+|...|++++|...++++.+. +...+..++..+...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88999999999999999999988644 888889999999999999999999987653 4568899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046039 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSM 384 (502)
Q Consensus 305 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (502)
+|+..++++.+.... +...+..+...+...|++++|...++.+.+. .+.+...+..++..|.+.|++++|...++++
T Consensus 322 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999986433 5678888999999999999999999999874 3445778888999999999999999999887
Q ss_pred CCC----CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 385 PSD----PD----AIIWGSLLSACRK---HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 385 ~~~----~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
... ++ ...|..++..+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|...++++.+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 542 22 3488999999999 999999999999999999999999999999999999999999999999865
Q ss_pred CC
Q 046039 454 KI 455 (502)
Q Consensus 454 ~~ 455 (502)
..
T Consensus 479 ~~ 480 (514)
T 2gw1_A 479 AR 480 (514)
T ss_dssp CS
T ss_pred cc
Confidence 43
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=228.15 Aligned_cols=201 Identities=10% Similarity=0.126 Sum_probs=174.1
Q ss_pred HHHHHHHHHHhCCCCChH-HHHHHHHhhhCCCCChhHHHHHhccCCC----CCcchHHHHHHHHhcCCC---------hH
Q 046039 4 LKKIHAHLIKTGLAKDPI-AASRILAFCTSPAGDINYAYLVFTQIKK----PNLFIWNTIIRGFSQSST---------PR 69 (502)
Q Consensus 4 ~~~i~~~~~~~g~~p~~~-~~~~ll~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~---------~~ 69 (502)
+..+...+.+.+..+.+. .++.+|..| ++.|++++|.++|++|.+ ||..+||+||.+|++.+. .+
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c-~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMC-SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 455667888888877764 588999999 999999999999999975 999999999999987765 57
Q ss_pred HHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhc
Q 046039 70 NAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEV 149 (502)
Q Consensus 70 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 149 (502)
+|.++|++|... |+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 88 ~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 88 RGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999998 9999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046039 150 DTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLN 229 (502)
Q Consensus 150 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 229 (502)
. +.-..||..+|+.|+.+|++.|+.++|.++|++|.+.|..|+..||+.++.
T Consensus 167 ~----------------------------~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~ 218 (501)
T 4g26_A 167 V----------------------------ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEE 218 (501)
T ss_dssp H----------------------------HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHH
T ss_pred H----------------------------hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 7 345779999999999999999999999999999999999999999999999
Q ss_pred HHhcc
Q 046039 230 ACAKL 234 (502)
Q Consensus 230 ~~~~~ 234 (502)
.++..
T Consensus 219 ~F~s~ 223 (501)
T 4g26_A 219 WFKSE 223 (501)
T ss_dssp HHHSH
T ss_pred HHhcC
Confidence 88764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=217.42 Aligned_cols=400 Identities=11% Similarity=-0.032 Sum_probs=317.1
Q ss_pred HHHHHhhhCCCCChhHHHHHhccCCC--CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhc
Q 046039 24 SRILAFCTSPAGDINYAYLVFTQIKK--PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQL 101 (502)
Q Consensus 24 ~~ll~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 101 (502)
...-..+ .+.|++++|+..|+++.+ |+..+|..+..++.+.|++++|+..|+.+.+. .+.+..++..+..++...
T Consensus 10 ~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 10 KDKGNQF-FRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHH-HHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHH
Confidence 3334445 788999999999999875 88899999999999999999999999999875 234456888999999999
Q ss_pred CCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHH-----------------------------------
Q 046039 102 GLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMF----------------------------------- 146 (502)
Q Consensus 102 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----------------------------------- 146 (502)
|++++|...|+.+.+.+. ++......++..+........+.+.+
T Consensus 87 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 999999999999998764 34333333443333322222111111
Q ss_pred ---hhcCCC---------CCeeeHHHHHHHHHh---cCCHHHHHHHHHccCC----------------C-ChhhHHHHHH
Q 046039 147 ---DEVDTE---------FDVVAWNSMIIGLAK---CGEIDESRRLFDKMVS----------------R-NTVSWNSMIS 194 (502)
Q Consensus 147 ---~~~~~~---------~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~~~l~~ 194 (502)
...... .+...+......+.. .|++++|...|+++.. | +..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 111110 112333444444444 8999999999988754 1 3457888899
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH
Q 046039 195 GYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPER 274 (502)
Q Consensus 195 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (502)
.+...|++++|...|+++.+.. |+...+..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999875 338888999999999999999999999999875 4567888999999999999999
Q ss_pred HHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 275 ALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 275 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
|...|+++.+ .+...+..++..+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++.+...
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998754 345688999999999999999999999998863 235678888999999999999999999998764
Q ss_pred cCCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 352 YKIKPS----IKHYSCMVDALGR---AGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 352 ~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
..-.++ ...+..+..++.. .|++++|...|+++.. .| +..++..++.++...|++++|...|+++++++|+
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 322222 3388889999999 9999999999998754 23 6778999999999999999999999999999999
Q ss_pred CcchHHHHH
Q 046039 423 ESCGYVLMS 431 (502)
Q Consensus 423 ~~~~~~~l~ 431 (502)
++..+..+.
T Consensus 482 ~~~~~~~~~ 490 (514)
T 2gw1_A 482 MEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 988877664
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=214.05 Aligned_cols=394 Identities=9% Similarity=-0.003 Sum_probs=270.7
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046039 53 FIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYM 132 (502)
Q Consensus 53 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (502)
..|..+...+.+.|++++|++.|+++.+. .+.+...+..+..++...|++++|...++++++.+ +.+..++..+..+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 34455555555666666666666665543 12334455555555556666666666666665553 2345555555566
Q ss_pred HHhCCChhHHHHHHhhcCCCCCe-----------------------------------eeHHHHHHHHHhcCCHHHHHHH
Q 046039 133 YANCGFLSEARLMFDEVDTEFDV-----------------------------------VAWNSMIIGLAKCGEIDESRRL 177 (502)
Q Consensus 133 ~~~~g~~~~a~~~~~~~~~~~~~-----------------------------------~~~~~l~~~~~~~~~~~~a~~~ 177 (502)
+...|++++|...|+.+...|+. ......+..+....+.+.+...
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 66666666666655433222221 1122223333334444444444
Q ss_pred HHccCCCChh---hHHHHHHHHHhC--------CChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCchHH
Q 046039 178 FDKMVSRNTV---SWNSMISGYVRN--------VKFKEALELFREMQEQNIKPSE-------FTMVSLLNACAKLGAIRQ 239 (502)
Q Consensus 178 ~~~~~~~~~~---~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~ 239 (502)
+......+.. ....+...+... |++++|..+++++.+.. +.+. .++..+...+...|++++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 4333332222 233333333222 47889999999988764 3332 246666777888899999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046039 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSS 316 (502)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 316 (502)
|...++.+.+.. |+...+..+...+...|++++|...|+++.+ .+..+|..++..+...|++++|+..++++.+.
T Consensus 262 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 262 AQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 999999999875 4477888889999999999999999987764 34568889999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C----
Q 046039 317 NLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD----P---- 388 (502)
Q Consensus 317 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~---- 388 (502)
.. .+...+..+..++...|++++|...++.+.+. .+.+...+..+...+...|++++|...|+++... +
T Consensus 340 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 340 NP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp CT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 43 24577888889999999999999999999874 3455678888999999999999999999887531 1
Q ss_pred CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 389 DAIIWGSLLSACRKH----------GNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
....+..+...+... |++++|...|+++++.+|+++.++..++.+|...|++++|.+.++++.+...
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 223355566777777 9999999999999999999999999999999999999999999999887654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-24 Score=205.25 Aligned_cols=330 Identities=11% Similarity=0.029 Sum_probs=227.0
Q ss_pred CcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHH
Q 046039 87 QRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLA 166 (502)
Q Consensus 87 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 166 (502)
+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..++...|++++|...|+++..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------- 88 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ--------------- 88 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------------
Confidence 34455666666666666666666666666553 33555666666666666666666666655432
Q ss_pred hcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHH
Q 046039 167 KCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSE---FTMVSL------------LNAC 231 (502)
Q Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l------------l~~~ 231 (502)
....+..++..++.+|.+.|++++|...|+++.+.. +.+. ..+..+ ...+
T Consensus 89 --------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 153 (450)
T 2y4t_A 89 --------------LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNA 153 (450)
T ss_dssp --------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011234455556666666666666666666665542 2222 333332 3346
Q ss_pred hccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHH
Q 046039 232 AKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIK 308 (502)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 308 (502)
...|++++|...++.+.+.. +.+..++..++.+|...|++++|...|+++.+ .++.+|..++..|...|++++|+.
T Consensus 154 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 232 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 66777777777777777654 34566677777777777777777777776654 345577778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHH------------HHHHhcCCCHHHHHHHHHHhhhhcCCCCC--hhHHHHHHHHHHhcCCH
Q 046039 309 LFSGLQSSNLKPDYISFIAV------------LTACNHSGKVNQAKDYFTLMTETYKIKPS--IKHYSCMVDALGRAGLL 374 (502)
Q Consensus 309 ~~~~~~~~~~~p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 374 (502)
.|+++..... .+...+..+ ..++...|++++|...|+.+.......+. ...+..++.++.+.|++
T Consensus 233 ~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 233 EVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCH
Confidence 8888876432 233333333 77888999999999999999875221111 44788889999999999
Q ss_pred HHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH------------HHhcC--
Q 046039 375 EEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL------------YAASY-- 438 (502)
Q Consensus 375 ~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-- 438 (502)
++|...++++.. .| +...|..++.+|...|++++|...++++++++|+++.++..++.+ |...|
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 999999998753 34 688999999999999999999999999999999999999999844 44555
Q ss_pred ---CchHHHHHHHH
Q 046039 439 ---QFEEAMEERLL 449 (502)
Q Consensus 439 ---~~~~A~~~~~~ 449 (502)
+.+++.+.+++
T Consensus 392 ~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 392 RNAKKQEIIKAYRK 405 (450)
T ss_dssp TTCCTTHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 45566666665
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-24 Score=204.87 Aligned_cols=378 Identities=12% Similarity=0.017 Sum_probs=246.0
Q ss_pred hHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHH
Q 046039 38 NYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRV 114 (502)
Q Consensus 38 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 114 (502)
..+...|..+.. .+...+..+...+.+.|++++|+.+|+.+.+. .+.+..++..+..++...|++++|...++.+
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444555443 45567889999999999999999999999875 3456778999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC-CC-Ce---eeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhH
Q 046039 115 VKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-EF-DV---VAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSW 189 (502)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 189 (502)
.+.+ +.+..++..+..+|...|++++|...|+++.. .| +. ..+..+...+... .+
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~ 146 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RL 146 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HH
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HH
Confidence 9986 44788999999999999999999999998764 23 23 4555554331110 11
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 046039 190 NSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKC 269 (502)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (502)
..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..++.+|...
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 222333444555555555555554442 3344445555555555555555555555554442 23344455555555555
Q ss_pred CChHHHHHHHhcCCCC---CcchH------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHH
Q 046039 270 GCPERALQVFNTVPKK---GLSCW------------NSMVFGLAMNGYENEAIKLFSGLQSSNLKPD-----YISFIAVL 329 (502)
Q Consensus 270 g~~~~A~~~~~~~~~~---~~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~ 329 (502)
|++++|...|+++.+. +...+ ..++..+...|++++|+..|+++.+. .|+ ...+..+.
T Consensus 225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERIC 302 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHH
Confidence 5555555555544321 11222 22377788888899999888888874 333 34677788
Q ss_pred HHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHH--------
Q 046039 330 TACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSA-------- 399 (502)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~-------- 399 (502)
.++.+.|++++|...++.+... .+.+...+..++.+|...|++++|...|+++.. .| +...+..+..+
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence 8888899999999999888763 244678888888889999999999999888754 35 45566666533
Q ss_pred ----HHhcC-----CHHHHHHHHHH-HHhcCCCCcc----------hHHHHHHHHHhcCCchHH
Q 046039 400 ----CRKHG-----NIEMAKQAAKQ-IIELDKNESC----------GYVLMSNLYAASYQFEEA 443 (502)
Q Consensus 400 ----~~~~~-----~~~~A~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A 443 (502)
|...| +.+++.+.+++ +++..|++.. .+..+..+|...|+.+++
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 33334 56788888887 6777777542 344555566666655544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=200.07 Aligned_cols=398 Identities=12% Similarity=0.001 Sum_probs=297.4
Q ss_pred HHHHHHHHhhhCCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHH
Q 046039 21 IAASRILAFCTSPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKA 97 (502)
Q Consensus 21 ~~~~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 97 (502)
..+..+-..+ .+.|++++|+..|+++.+ .+..+|..+..++.+.|++++|++.|+++.+. .+.+..++..+..+
T Consensus 26 ~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHF-FTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHH-HHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHH
Confidence 3344445555 789999999999999865 56778999999999999999999999999875 24456688888999
Q ss_pred HHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--------------------------
Q 046039 98 YAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT-------------------------- 151 (502)
Q Consensus 98 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------------------- 151 (502)
+...|++++|...++ .... .|+.. ...+..+...+....|...++++..
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999996 3322 22211 1112222333333444444443321
Q ss_pred ----------CCCee---eHHHHHHHHHh--------cCCHHHHHHHHHccCCC--C--------hhhHHHHHHHHHhCC
Q 046039 152 ----------EFDVV---AWNSMIIGLAK--------CGEIDESRRLFDKMVSR--N--------TVSWNSMISGYVRNV 200 (502)
Q Consensus 152 ----------~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~--~--------~~~~~~l~~~~~~~~ 200 (502)
..+.. ....+...+.. .+++++|..+|+++.+. + ..++..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 11111 12222222221 25889999999998553 2 224777778899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 046039 201 KFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFN 280 (502)
Q Consensus 201 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 280 (502)
++++|...|+.+.+. .|+...+..+..++...|+++.|...++.+.+.. +.+..++..+...+...|++++|...|+
T Consensus 258 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999986 4558889999999999999999999999999876 4567889999999999999999999999
Q ss_pred cCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-
Q 046039 281 TVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP- 356 (502)
Q Consensus 281 ~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 356 (502)
++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+.+.....+
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 8764 345689999999999999999999999999864 33567888899999999999999999999876421111
Q ss_pred ---ChhHHHHHHHHHHhc----------CCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046039 357 ---SIKHYSCMVDALGRA----------GLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDK 421 (502)
Q Consensus 357 ---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 421 (502)
....+..+..++.+. |++++|...|+++.. .| +...+..++.+|...|++++|.+.|++++++.|
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 122244556677787 999999999998864 34 678899999999999999999999999999999
Q ss_pred CCcchHHHH
Q 046039 422 NESCGYVLM 430 (502)
Q Consensus 422 ~~~~~~~~l 430 (502)
+++.....+
T Consensus 494 ~~~~~~~~~ 502 (537)
T 3fp2_A 494 TMDEKLQAT 502 (537)
T ss_dssp -CHHHHHHH
T ss_pred CcHHHHHHH
Confidence 988765543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.8e-22 Score=182.95 Aligned_cols=326 Identities=12% Similarity=0.064 Sum_probs=204.0
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC---CChhhHHHHHHHH
Q 046039 122 DQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS---RNTVSWNSMISGY 196 (502)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 196 (502)
++..+..+...+...|++++|...|+++.. +.+..++..+..++...|++++|...|+++.+ .+...+..+..++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 344556666666667777777766666542 23344445555555555555555555555422 1334445555555
Q ss_pred HhCCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH
Q 046039 197 VRNVKFKEALELFREMQEQNIK---PSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPE 273 (502)
Q Consensus 197 ~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (502)
...|++++|...|+++.+.. + .+...+..+..... ...+..+...+...|+++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 55555555555555554432 1 12222222210000 000111245566667777
Q ss_pred HHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 046039 274 RALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTE 350 (502)
Q Consensus 274 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (502)
+|..+++++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++...+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77776665543 234466666777777777777777777777653 33566677777777777777777777777765
Q ss_pred hcCCCCChhHHH------------HHHHHHHhcCCHHHHHHHHHhCCC-CCC-H----HHHHHHHHHHHhcCCHHHHHHH
Q 046039 351 TYKIKPSIKHYS------------CMVDALGRAGLLEEAEKLIRSMPS-DPD-A----IIWGSLLSACRKHGNIEMAKQA 412 (502)
Q Consensus 351 ~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~----~~~~~l~~~~~~~~~~~~A~~~ 412 (502)
.. +.+...+. .++..+.+.|++++|...++++.. .|+ . ..+..++.++...|++++|...
T Consensus 217 ~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 32 22222222 235668888999999988887654 233 2 2355678888899999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHH
Q 046039 413 AKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLND 492 (502)
Q Consensus 413 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 492 (502)
++++++.+|+++.++..++.+|...|++++|...++++.+ ..|+++++...|..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--------------------------HNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------------------------TCTTCHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------cCCCChHHHHHHHH
Confidence 9999999999999999999999999999999999988874 35677788888888
Q ss_pred HHHHHHhc
Q 046039 493 LGLLIQEM 500 (502)
Q Consensus 493 ~~~~~~~~ 500 (502)
+...++++
T Consensus 349 ~~~~~~~~ 356 (359)
T 3ieg_A 349 AQRLLKQS 356 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777664
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-21 Score=179.11 Aligned_cols=315 Identities=12% Similarity=-0.023 Sum_probs=225.6
Q ss_pred cccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHH
Q 046039 88 RLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGL 165 (502)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~ 165 (502)
...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...++++.. +.+...+..+..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4467778888999999999999999999985 44788999999999999999999999998764 44667889999999
Q ss_pred HhcCCHHHHHHHHHccCCCCh------hhHHHH------------HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046039 166 AKCGEIDESRRLFDKMVSRNT------VSWNSM------------ISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSL 227 (502)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~------~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 227 (502)
...|++++|...|++....++ ..+..+ ...+...|++++|+..++++.+.. +.+...+..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 999999999999999865333 233333 345555555555555555555543 3444555555
Q ss_pred HHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 046039 228 LNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAI 307 (502)
Q Consensus 228 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 307 (502)
..++...|++++|...++.+.+.. +.+.. .+..+...+...|++++|.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-------------------------------~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTE-------------------------------AFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHH-------------------------------HHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-------------------------------HHHHHHHHHHHcCCHHHHH
Confidence 555555555555555555555442 22334 4444455555555555555
Q ss_pred HHHHHHHHCCCCCCHHH------------HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh--hHHHHHHHHHHhcCC
Q 046039 308 KLFSGLQSSNLKPDYIS------------FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSI--KHYSCMVDALGRAGL 373 (502)
Q Consensus 308 ~~~~~~~~~~~~p~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 373 (502)
..+++..+.... +... ...+...+...|++++|...++.+.....-.+.. ..+..+..++...|+
T Consensus 209 ~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 209 SEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC
Confidence 555555543211 2221 2233666888999999999999988752211111 235567888999999
Q ss_pred HHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046039 374 LEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS 437 (502)
Q Consensus 374 ~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 437 (502)
+++|...++++.. .| +...|..++.++...|++++|.+.|+++++++|+++..+..+..+....
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999988764 34 7789999999999999999999999999999999999998888776544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-20 Score=173.05 Aligned_cols=278 Identities=12% Similarity=0.019 Sum_probs=134.1
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHccCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046039 154 DVVAWNSMIIGLAKCGEIDESRRLFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNA 230 (502)
Q Consensus 154 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 230 (502)
+...+..+...+...|++++|.++|+++.. .+...+..++.++...|++++|...++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 344444555555555555555555555422 223344444555555555555555555555443 3344445555555
Q ss_pred HhccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHH
Q 046039 231 CAKLG-AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEA 306 (502)
Q Consensus 231 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a 306 (502)
+...| ++++|...++.+.+.. +.+...+..+...+...|++++|...|+++.+. +...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 55555 5555555555555443 223444455555555555555555555544321 223444455555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC-------CCCChhHHHHHHHHHHhcCCHHHHHH
Q 046039 307 IKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYK-------IKPSIKHYSCMVDALGRAGLLEEAEK 379 (502)
Q Consensus 307 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~ 379 (502)
...+++..+.. +.+...+..+...+...|++++|...++.+..... .+.....+..+..+|...|++++|..
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 55555555432 12344444455555555555555555555443210 01223344445555555555555555
Q ss_pred HHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 380 LIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 380 ~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
.++++.. . .+...|..++.++...|++++|.+.++++++++|+++..+..++.++
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 5544432 1 23344444555555555555555555555555555555555555444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-19 Score=172.45 Aligned_cols=376 Identities=12% Similarity=-0.015 Sum_probs=308.7
Q ss_pred HHHhccCC-CCCcchHHHHHHHHhc----CCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHh----cCCchhHHHHH
Q 046039 41 YLVFTQIK-KPNLFIWNTIIRGFSQ----SSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQ----LGLARDGAQLH 111 (502)
Q Consensus 41 ~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~ 111 (502)
...+.... ..++.++..+...|.. .+++++|+..|+...+. | +...+..+...+.. .+++++|...|
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 44444432 3677888888888887 89999999999999875 3 55677788888887 88999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHh----CCChhHHHHHHhhcCCCCCeeeHHHHHHHHHh----cCCHHHHHHHHHccCC
Q 046039 112 GRVVKQGLEFDQFIHNTIIYMYAN----CGFLSEARLMFDEVDTEFDVVAWNSMIIGLAK----CGEIDESRRLFDKMVS 183 (502)
Q Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 183 (502)
+...+.| +...+..+...|.. .+++++|...|++.....++..+..+...|.. .++.++|...|++..+
T Consensus 103 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 103 KKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 9998876 66777888888888 78999999999987766677788888888887 8899999999988744
Q ss_pred -CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCC
Q 046039 184 -RNTVSWNSMISGYVR----NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK----LGAIRQGEWIHNFLVTNCFEL 254 (502)
Q Consensus 184 -~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 254 (502)
.++.++..+...|.. .+++++|.++|++..+.| +...+..+...+.. .+++++|..+++...+.+
T Consensus 180 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 253 (490)
T 2xm6_A 180 QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--- 253 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---
T ss_pred CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 467788888899888 899999999999998875 45667777777765 789999999999998865
Q ss_pred chhHHHHHHHHHHh----cCChHHHHHHHhcCCCC-CcchHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHH
Q 046039 255 NTIVVTAIIDMYCK----CGCPERALQVFNTVPKK-GLSCWNSMVFGLAMN-----GYENEAIKLFSGLQSSNLKPDYIS 324 (502)
Q Consensus 255 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~ 324 (502)
++..+..+...|.. .+++++|...|++..+. ++.++..+...|... +++++|+.+|++..+.| +...
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a 330 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATA 330 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHH
Confidence 45667778888887 89999999999987664 456788888888887 89999999999999875 4566
Q ss_pred HHHHHHHHhcCC---CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 046039 325 FIAVLTACNHSG---KVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR----AGLLEEAEKLIRSMPSDPDAIIWGSLL 397 (502)
Q Consensus 325 ~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~ 397 (502)
+..+...+...| ++++|.++|++..+. .++..+..|...|.. .+++++|...|++.....++..+..|.
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg 406 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 677777776656 789999999998874 357788889999988 899999999999987667788899999
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHh
Q 046039 398 SACRK----HGNIEMAKQAAKQIIELDKN---ESCGYVLMSNLYAA 436 (502)
Q Consensus 398 ~~~~~----~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 436 (502)
..|.. .+++++|...|+++.+.+|+ ++.....++.++..
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99998 89999999999999998854 77777777765543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-20 Score=168.52 Aligned_cols=267 Identities=14% Similarity=0.069 Sum_probs=203.9
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046039 184 RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAII 263 (502)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (502)
.++..+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466677777888888888888888888887764 4455566667777788888888888888888764 44667777788
Q ss_pred HHHHhcC-ChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHH
Q 046039 264 DMYCKCG-CPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVN 339 (502)
Q Consensus 264 ~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 339 (502)
..+...| ++++|...|+++.+. +...|..++..+...|++++|+..++++.+.... +...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 8888888 888888888876543 3457888888888888888888888888775422 3455666777888888888
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHhcCCHHH
Q 046039 340 QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-----------DPDAIIWGSLLSACRKHGNIEM 408 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~ 408 (502)
+|...++.+.+ ..+.+...+..++..+...|++++|...++++.. .....++..++.++...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888876 3344567777888888888888888888776542 1234577888888888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 409 AKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 409 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
|...++++++..|+++.++..++.+|...|++++|.+.++++.+..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 88888888888888888888888888888888888888888766543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-18 Score=168.08 Aligned_cols=363 Identities=12% Similarity=0.021 Sum_probs=306.3
Q ss_pred HHHHHHHhHhcCCCCCCcccHHHHHHHHHh----cCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----CCChhHH
Q 046039 71 AILLFIDMLVTSPIQPQRLTYPSLFKAYAQ----LGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYAN----CGFLSEA 142 (502)
Q Consensus 71 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 142 (502)
+++.++...+. .+...+..+...+.. .++++.|...|+...+.| +...+..+...|.. .+++++|
T Consensus 26 ~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 45555555443 356677777777777 899999999999999875 67788889999998 8999999
Q ss_pred HHHHhhcCCCCCeeeHHHHHHHHHh----cCCHHHHHHHHHccCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHH
Q 046039 143 RLMFDEVDTEFDVVAWNSMIIGLAK----CGEIDESRRLFDKMVS-RNTVSWNSMISGYVR----NVKFKEALELFREMQ 213 (502)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~ 213 (502)
...|++.....++..+..|...|.. .+++++|+..|++..+ .++..+..+...|.. .+++++|+++|++..
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 9999988766777888888888988 8899999999999855 467788888888887 889999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCCCC
Q 046039 214 EQNIKPSEFTMVSLLNACAK----LGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCK----CGCPERALQVFNTVPKK 285 (502)
Q Consensus 214 ~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 285 (502)
+.| +...+..+...+.. .++.++|...|++..+.+ ++..+..+...|.. .+++++|...|++..+.
T Consensus 179 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 179 EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 875 56778888888877 899999999999999875 55677788888886 88999999999987665
Q ss_pred -CcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC-----CCHHHHHHHHHHhhhhcCCC
Q 046039 286 -GLSCWNSMVFGLAM----NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHS-----GKVNQAKDYFTLMTETYKIK 355 (502)
Q Consensus 286 -~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~ 355 (502)
++.++..+...|.. .+++++|+.+|++..+.| +...+..+...+... +++++|..+|+...+. +
T Consensus 253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~-- 326 (490)
T 2xm6_A 253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G-- 326 (490)
T ss_dssp TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T--
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C--
Confidence 45577888888888 899999999999998765 456677777777776 8999999999998874 3
Q ss_pred CChhHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHH
Q 046039 356 PSIKHYSCMVDALGRAG---LLEEAEKLIRSMPSDPDAIIWGSLLSACRK----HGNIEMAKQAAKQIIELDKNESCGYV 428 (502)
Q Consensus 356 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~ 428 (502)
+...+..+...|...| ++++|.++|++.....++..+..+...|.. .+++++|.+.|+++.+.. ++..+.
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~ 403 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQV 403 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHH
Confidence 4567777888888766 889999999998776788899999999998 899999999999998854 578899
Q ss_pred HHHHHHHh----cCCchHHHHHHHHhhhcCC
Q 046039 429 LMSNLYAA----SYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 429 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 455 (502)
.|+.+|.. .+++++|...+++..+.+.
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999998 8999999999999998774
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-20 Score=174.50 Aligned_cols=298 Identities=13% Similarity=0.001 Sum_probs=192.3
Q ss_pred HHhCCChhHHHH-HHhhcCC-C---C--CeeeHHHHHHHHHhcCCHHHHHHHHHccCC---CChhhHHHHHHHHHhCCCh
Q 046039 133 YANCGFLSEARL-MFDEVDT-E---F--DVVAWNSMIIGLAKCGEIDESRRLFDKMVS---RNTVSWNSMISGYVRNVKF 202 (502)
Q Consensus 133 ~~~~g~~~~a~~-~~~~~~~-~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 202 (502)
+...|++++|.. .|++... . | +...+..+...+.+.|++++|...|+++.+ .+..++..+..++...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 334466666666 6654432 1 1 234455555555555666666555555522 2344555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 046039 203 KEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTV 282 (502)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 282 (502)
++|...|+++.+.. +.+..++..+..++...|++++|...++.+.+.... +...+..+... .. .
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 56655555555543 344555555555555555555555555555554311 11111111000 00 0
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH
Q 046039 283 PKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHY 361 (502)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (502)
.. ....+..+...+ ..|++++|+..|+++.+..... +..++..+...+...|++++|...++.+... .+.+...+
T Consensus 179 ~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~ 254 (368)
T 1fch_A 179 AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLW 254 (368)
T ss_dssp --------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHH
Confidence 00 000111233333 8899999999999998864322 5788999999999999999999999999874 34457889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------cchHH
Q 046039 362 SCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE-----------SCGYV 428 (502)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~ 428 (502)
..++.+|...|++++|...|+++.. . .+...+..++.+|...|++++|...|++++++.|++ +.++.
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 9999999999999999999998754 2 467899999999999999999999999999988887 78999
Q ss_pred HHHHHHHhcCCchHHHHHHHHh
Q 046039 429 LMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
.++.+|...|++++|..++++.
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999999999987644
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-17 Score=163.98 Aligned_cols=409 Identities=8% Similarity=-0.005 Sum_probs=280.3
Q ss_pred ChHHHHHHHHhhhCCCCChhHHHHHhccCCC--C-CcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHH
Q 046039 19 DPIAASRILAFCTSPAGDINYAYLVFTQIKK--P-NLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLF 95 (502)
Q Consensus 19 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 95 (502)
+...|..++. + .+.|+++.|..+|+++.+ | +...|..++..+.+.|++++|..+|++.... .|+...|...+
T Consensus 12 ~~~~w~~l~~-~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-E-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-H-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHH
T ss_pred CHHHHHHHHH-H-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHH
Confidence 5667777776 4 567889999999988865 3 4557888888888889999999999988864 46666666666
Q ss_pred HHH-HhcCCchhHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------CCChhHHHHHHhhcCCCCCe---e
Q 046039 96 KAY-AQLGLARDGAQ----LHGRVVKQ-GLEF-DQFIHNTIIYMYAN---------CGFLSEARLMFDEVDTEFDV---V 156 (502)
Q Consensus 96 ~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~---~ 156 (502)
... ...|+.+.|.+ +|+..+.. |..| +..+|...+....+ .|+++.|..+|++....|.. .
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 433 34577777665 66666553 4333 45677777666554 57788888888777653322 1
Q ss_pred eHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHH------HHCC---CCCC-------
Q 046039 157 AWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREM------QEQN---IKPS------- 220 (502)
Q Consensus 157 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m------~~~~---~~~~------- 220 (502)
.|..........+. ..+..++. .+.+++..|..+++.. .+.. ++|+
T Consensus 167 ~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 167 LWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 22221111100110 01111111 1234566666666552 2221 3444
Q ss_pred -HHHHHHHHHHHhc----cCch----HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCChH-------HHHH
Q 046039 221 -EFTMVSLLNACAK----LGAI----RQGEWIHNFLVTNCFELNTIVVTAIIDMYCK-------CGCPE-------RALQ 277 (502)
Q Consensus 221 -~~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~ 277 (502)
...|...+..... .++. ..+..+|++++... +.++.++..++..+.+ .|+++ +|..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 1344444432221 1232 36778898888864 5567888888888775 68987 8999
Q ss_pred HHhcCCC-C---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 278 VFNTVPK-K---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPD-Y-ISFIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 278 ~~~~~~~-~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
+|++..+ . +...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|+...+.
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9998775 2 3558899999999999999999999999985 443 3 57888888888899999999999999863
Q ss_pred cCCCCChhHHHHHHHH-HHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---
Q 046039 352 YKIKPSIKHYSCMVDA-LGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC--- 425 (502)
Q Consensus 352 ~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--- 425 (502)
.+.+...|...+.. +...|+.++|..+|++.... | ++..|..++..+.+.|+.++|..+|+++++..|.++.
T Consensus 386 --~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 386 --ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp --TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred --cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 22233333332222 34689999999999987643 5 6789999999999999999999999999998777665
Q ss_pred -hHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 426 -GYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 426 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
+|...+......|+.+.+..+.+++.+.-+
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 787778888889999999999998876544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=168.47 Aligned_cols=258 Identities=12% Similarity=-0.039 Sum_probs=181.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYC 267 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (502)
.+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|...|+++.+.. +.+..++..++.+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 35555555555555555555555555543 3445555555555555555555555555555543 233455555555555
Q ss_pred hcCChHHHHHHHhcCCCCC-------------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHh
Q 046039 268 KCGCPERALQVFNTVPKKG-------------LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLK-PDYISFIAVLTACN 333 (502)
Q Consensus 268 ~~g~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~ 333 (502)
..|++++|...|+++.+.+ ...+..+...+...|++++|+..++++.+.... ++..++..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 5555555555555544321 123344577888899999999999999886432 26788999999999
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHH
Q 046039 334 HSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQ 411 (502)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~ 411 (502)
..|++++|...++++.+. .+.+..++..++.+|...|++++|...|+++.. .| +..+|..++.+|...|++++|..
T Consensus 225 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999874 345688899999999999999999999998764 34 57899999999999999999999
Q ss_pred HHHHHHhcCCC------------CcchHHHHHHHHHhcCCchHHHHHHHH
Q 046039 412 AAKQIIELDKN------------ESCGYVLMSNLYAASYQFEEAMEERLL 449 (502)
Q Consensus 412 ~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 449 (502)
.|++++++.|+ +..++..++.++...|+.+.|..+.++
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999998876 367899999999999999999887655
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-19 Score=163.40 Aligned_cols=279 Identities=13% Similarity=0.150 Sum_probs=115.4
Q ss_pred CCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHH
Q 046039 33 PAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHG 112 (502)
Q Consensus 33 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 112 (502)
+.|++++|.+.++++..| .+|+.++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 459999999999999655 48999999999999999999999643 577789999999999999999999888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHH
Q 046039 113 RVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSM 192 (502)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 192 (502)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp -------------------------CHHHHTTTTT----CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 77774 4567888999999999999999887775 577789999999999999999999999987 588999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCP 272 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (502)
+.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCH
Confidence 99999999999999999988 2678899999999999999998554443 223334455677888888888
Q ss_pred HHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHhcCCCHHHHH
Q 046039 273 ERALQVFNTVPKKG---LSCWNSMVFGLAMNGYENEAIKLFSGLQSS-NLKP------DYISFIAVLTACNHSGKVNQAK 342 (502)
Q Consensus 273 ~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p------~~~~~~~l~~~~~~~~~~~~a~ 342 (502)
++|..+++.....+ ...|+.+.-+|++- ++++..+.++..... +++| +...|..+...|...++++.|.
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 88888888766543 33666666666654 233333333322211 1222 2234555555555566666555
Q ss_pred H
Q 046039 343 D 343 (502)
Q Consensus 343 ~ 343 (502)
.
T Consensus 303 ~ 303 (449)
T 1b89_A 303 I 303 (449)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=168.88 Aligned_cols=300 Identities=12% Similarity=-0.004 Sum_probs=213.2
Q ss_pred HHhcCCHHHHHH-HHHccCC--C-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046039 165 LAKCGEIDESRR-LFDKMVS--R-----NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGA 236 (502)
Q Consensus 165 ~~~~~~~~~a~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 236 (502)
+...|++++|.. .|++... | +...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445578888888 8876633 1 34567788888889999999999999888875 6677788888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHH
Q 046039 237 IRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS---CWNSMVFGLAMNGYENEAIKLFSGL 313 (502)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~ 313 (502)
+++|...++.+.+.. +.+..++..++.+|...|++++|...|+++.+.++. .+..+...
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------- 175 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG----------------- 175 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-----------------
Confidence 888888888888775 345667777777777777777777777665433221 11100000
Q ss_pred HHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHH
Q 046039 314 QSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAI 391 (502)
Q Consensus 314 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~ 391 (502)
... ..+. ..+.. +..+...|++++|...++.+.......++..++..++..|.+.|++++|...|+++.. .| +..
T Consensus 176 ~~~-~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 252 (368)
T 1fch_A 176 AGG-AGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL 252 (368)
T ss_dssp ------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhh-hccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 000 0000 11112 2233378999999999999987533222578899999999999999999999998764 34 678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEE
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVH 471 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (502)
.|..++.++...|++++|+..|+++++..|+++.++..++.+|.+.|++++|...++++.+..... ...
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~--------- 321 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS--RGP--------- 321 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--CCc---------
Confidence 999999999999999999999999999999999999999999999999999999999988654321 000
Q ss_pred EEEeCCCCCCCchHHHHHHHHHHHHHHhcC
Q 046039 472 EFVAGGRLHPKAPEVYLLLNDLGLLIQEMG 501 (502)
Q Consensus 472 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 501 (502)
....+|....++..++.++..+++.+
T Consensus 322 ----~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 322 ----RGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp -------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred ----cccccchhhHHHHHHHHHHHHhCChH
Confidence 11346778899999999999888764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-18 Score=165.28 Aligned_cols=388 Identities=10% Similarity=-0.032 Sum_probs=187.2
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHHHhHhc----CC--CCC-CcccHHHHHHHHHhcCCchhHHHHHHHHHHhC------
Q 046039 52 LFIWNTIIRGFSQSSTPRNAILLFIDMLVT----SP--IQP-QRLTYPSLFKAYAQLGLARDGAQLHGRVVKQG------ 118 (502)
Q Consensus 52 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 118 (502)
+..||.|...+...|++++|++.|++..+. .+ ..| ...+|..+..++...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666666666666666666666655321 00 112 12345556666666666666666666554421
Q ss_pred C-CCchhHHHHHHHHHHhC--CChhHHHHHHhhcCC-CC-CeeeHHHHHHH---HHhcCCHHHHHHHHHccCC---CChh
Q 046039 119 L-EFDQFIHNTIIYMYANC--GFLSEARLMFDEVDT-EF-DVVAWNSMIIG---LAKCGEIDESRRLFDKMVS---RNTV 187 (502)
Q Consensus 119 ~-~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~-~~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~---~~~~ 187 (502)
. .....++..+..++... +++++|...|++... .| ++..+..+..+ +...++.++|++.+++..+ .+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 0 01233444444443332 345666666655432 22 22233333222 2233444445554444321 2233
Q ss_pred hHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046039 188 SWNSMISGYVR----NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAII 263 (502)
Q Consensus 188 ~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (502)
++..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 33333333222 234455555555554443 3444455555555555555555555555555443 22334444444
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHH
Q 046039 264 DMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKD 343 (502)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 343 (502)
.+|...+....+... ..........+.++.|...+++..+.+. .+..++..+...+...|++++|+.
T Consensus 289 ~~y~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRE------------NGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp HHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhHHH------------HHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHH
Confidence 443221111000000 0000001112345677788877776532 244566777888888899999999
Q ss_pred HHHHhhhhcCCCCCh--hHHHHHHH-HHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 046039 344 YFTLMTETYKIKPSI--KHYSCMVD-ALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL 419 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 419 (502)
.|++.... ...+.. ..+..+.. .+...|+.++|+..|++... .|+..... +....+..++++.++.
T Consensus 356 ~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 356 YFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSK 425 (472)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHh
Confidence 99888764 222221 12233332 23467889999988877643 34432222 2234566778888889
Q ss_pred CCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEE
Q 046039 420 DKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLI 464 (502)
Q Consensus 420 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 464 (502)
+|+++.++..|+.+|...|++++|++.+++..+.+.......+|+
T Consensus 426 ~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp CC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999999999998776655555554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.7e-17 Score=164.17 Aligned_cols=392 Identities=12% Similarity=0.108 Sum_probs=295.9
Q ss_pred HHHHHHHHhCC--CCChHHHHHHHHhhhCCCCChhHHHHHhccCCC-C-----CcchHHHHHHHHhcCCChHHHHHHHHH
Q 046039 6 KIHAHLIKTGL--AKDPIAASRILAFCTSPAGDINYAYLVFTQIKK-P-----NLFIWNTIIRGFSQSSTPRNAILLFID 77 (502)
Q Consensus 6 ~i~~~~~~~g~--~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~ 77 (502)
++.++.....+ .-++.-.......| +..|.+.+|+.+++++.- | +....+.++.+..+. +..+..+..+.
T Consensus 969 ~Lidqv~a~aL~e~~~PeeVs~~vKaf-~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~k 1046 (1630)
T 1xi4_A 969 PLIDQVVQTALSETQDPEEVSVTVKAF-MTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINR 1046 (1630)
T ss_pred HHHHHHHHhhcccccCHHHhHHHHHHH-HhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHH
Confidence 44455444443 23455556677777 788999999999998763 2 235566777777776 55666666655
Q ss_pred hHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeee
Q 046039 78 MLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVA 157 (502)
Q Consensus 78 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 157 (502)
.... + ...+...+...|.+++|..+|++.. ......+.+ +...|++++|.++.++.. +..+
T Consensus 1047 Ld~~-----d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn---~p~v 1107 (1630)
T 1xi4_A 1047 LDNY-----D---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN---EPAV 1107 (1630)
T ss_pred hhhc-----c---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC---CHHH
Confidence 5421 1 3446777888999999999998862 122222333 227788999999998764 5778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCch
Q 046039 158 WNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAI 237 (502)
Q Consensus 158 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 237 (502)
|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|.++|...++.. +++...+.++.+|++.+++
T Consensus 1108 WsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1108 WSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRL 1183 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCH
Confidence 999999999999999999999775 678888899999999999999999999887764 3333344588889999888
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046039 238 RQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSN 317 (502)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 317 (502)
+....+. + .++...+..+...|...|++++|..+|..+ ..|..++..|.+.|++++|++.+++.
T Consensus 1184 eele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA---- 1247 (1630)
T 1xi4_A 1184 AELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA---- 1247 (1630)
T ss_pred HHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh----
Confidence 8644442 2 345566777999999999999999999986 48999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHH
Q 046039 318 LKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGS 395 (502)
Q Consensus 318 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~ 395 (502)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++....- + ....|.-
T Consensus 1248 --~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1248 --NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred --CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 35688999999999999999998876543 235667778999999999999999999887642 3 3446766
Q ss_pred HHHHHHhc--CCHHHHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCchHHHHH
Q 046039 396 LLSACRKH--GNIEMAKQAAKQIIELDK-----NESCGYVLMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 396 l~~~~~~~--~~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 446 (502)
+...|.+. ++..++.+.|..-..+.| .+...|..+...|.+.|+++.|...
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 77777664 356666667766666555 6778899999999999999999853
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-19 Score=162.87 Aligned_cols=258 Identities=11% Similarity=-0.068 Sum_probs=177.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCK 268 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (502)
+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444432 3344444444444444455555555554444432 2234444444444555
Q ss_pred cCChHHHHHHHhcCCCCC---cchHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046039 269 CGCPERALQVFNTVPKKG---LSCWNSM--------------VF-GLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLT 330 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~~~---~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 330 (502)
.|++++|...++++.+.+ ...+..+ .. .+...|++++|...++++.+... .+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 555555554444433221 1111111 22 36678899999999999988643 36788899999
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHH
Q 046039 331 ACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEM 408 (502)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~ 408 (502)
.+...|++++|...++.+... .+.+...+..++..+...|++++|...|+++.. .| +...+..++.++...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999874 345678889999999999999999999988754 24 67789999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 409 AKQAAKQIIELDKN------------ESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 409 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
|.+.++++++..|+ ++..+..++.++...|++++|..++++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999 78899999999999999999999887654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-17 Score=161.58 Aligned_cols=396 Identities=10% Similarity=0.025 Sum_probs=270.0
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC--CCcchHHHHHHHH-hcCCChHHHHH----H
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK--PNLFIWNTIIRGF-SQSSTPRNAIL----L 74 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~-~~~~~~~~a~~----~ 74 (502)
+.++.+++.+.+. .|-+...|..++..+ .+.|+++.|..+|++... |+...|...+... ...|+.+.|.+ +
T Consensus 29 ~~a~~~~e~al~~-~P~~~~~w~~~~~~~-~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~ 106 (530)
T 2ooe_A 29 DKARKTYERLVAQ-FPSSGRFWKLYIEAE-IKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA 106 (530)
T ss_dssp HHHHHHHHHHHTT-CTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 4678889998875 344566788888888 889999999999999887 8777787777533 45677777665 7
Q ss_pred HHHhHhcCCCCCC-cccHHHHHHHHHh---------cCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHH
Q 046039 75 FIDMLVTSPIQPQ-RLTYPSLFKAYAQ---------LGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARL 144 (502)
Q Consensus 75 ~~~~~~~~~~~p~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 144 (502)
|+......|..|+ ...|...+..... .|+++.|..+|++.++........+|..........|. ..+..
T Consensus 107 ~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~ 185 (530)
T 2ooe_A 107 YDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKK 185 (530)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHH
Confidence 7777654355444 4467777766544 68899999999999883111112344333322111111 11111
Q ss_pred HHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHc----------c---CCCC--------hhhHHHHHHHHHhC----
Q 046039 145 MFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDK----------M---VSRN--------TVSWNSMISGYVRN---- 199 (502)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----------~---~~~~--------~~~~~~l~~~~~~~---- 199 (502)
++.. +.+++..|..++.. . ..|+ ...|...+......
T Consensus 186 ~l~~------------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 186 MIED------------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHT------------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHH------------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 1111 11223333333322 1 0111 12444444332221
Q ss_pred CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCchH-------HHHHHHHHHHHcCCCCchhHHHH
Q 046039 200 VKF----KEALELFREMQEQNIKPSEFTMVSLLNACAK-------LGAIR-------QGEWIHNFLVTNCFELNTIVVTA 261 (502)
Q Consensus 200 ~~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ 261 (502)
++. +++..+|++++... +.+...|...+..+.. .|+++ +|..++++..+.-.+.+...+..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 222 46778888887763 5567777777777664 68876 88888888886323456778888
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCC---c-chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhcCC
Q 046039 262 IIDMYCKCGCPERALQVFNTVPKKG---L-SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTA-CNHSG 336 (502)
Q Consensus 262 l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~ 336 (502)
++..+.+.|++++|..+|+++.+.+ . ..|..++..+.+.|++++|..+|++..+... .+...+...+.. +...|
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcC
Confidence 8888889999999999998766532 2 3788888888889999999999999988632 233333332222 33589
Q ss_pred CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C--CHHHHHHHHHHHHhcCCHHHHH
Q 046039 337 KVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD----P--DAIIWGSLLSACRKHGNIEMAK 410 (502)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~A~ 410 (502)
++++|..+|+...+.. +.+...+..++..+.+.|+.++|..+|+++... | ....|...+......|+.+.+.
T Consensus 406 ~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp CHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred ChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999998752 446788899999999999999999999987542 2 2448888899899999999999
Q ss_pred HHHHHHHhcCCC
Q 046039 411 QAAKQIIELDKN 422 (502)
Q Consensus 411 ~~~~~~~~~~p~ 422 (502)
.+++++.+..|+
T Consensus 484 ~~~~r~~~~~p~ 495 (530)
T 2ooe_A 484 KVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHHCch
Confidence 999999998884
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-17 Score=149.88 Aligned_cols=268 Identities=13% Similarity=0.082 Sum_probs=207.7
Q ss_pred HHHhcCCHHHHHHHHHccCCCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHH
Q 046039 164 GLAKCGEIDESRRLFDKMVSRNT----VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQ 239 (502)
Q Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 239 (502)
-....|++..|+..++.....++ .....+..+|...|+++.|+..++. . -+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 34456777777777776644332 2445567888889999888876654 2 36677788888888888899999
Q ss_pred HHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 046039 240 GEWIHNFLVTNCF-ELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNL 318 (502)
Q Consensus 240 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 318 (502)
|.+.++++...+. +.++..+..+...+...|++++|+..+++ ..+...+..++..+.+.|++++|.+.|+++.+..
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 9999999887764 33566677788899999999999999998 4567788899999999999999999999998864
Q ss_pred CCCHHHH---HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHH
Q 046039 319 KPDYISF---IAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIW 393 (502)
Q Consensus 319 ~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~ 393 (502)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|+++.. .| ++.++
T Consensus 161 -p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 161 -EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 443211 22334445668999999999999884 466788899999999999999999999998764 35 67789
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 046039 394 GSLLSACRKHGNIEM-AKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 445 (502)
..++..+...|+.++ +.++++++++++|+++.+.. ...+.+.++++..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHH
Confidence 999999999999875 67899999999999986654 3444555555544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-16 Score=158.45 Aligned_cols=349 Identities=13% Similarity=0.109 Sum_probs=269.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHhcCC-CCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 046039 55 WNTIIRGFSQSSTPRNAILLFIDMLVTSP-IQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMY 133 (502)
Q Consensus 55 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 133 (502)
-...+.+|...|.+.+|++++++...... ..-+...-+.++.+..+. +..+..++....... + ...+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence 34556777888888888888888874311 112233455566666666 556666666555421 1 33477888
Q ss_pred HhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHH-hcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 046039 134 ANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLA-KCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREM 212 (502)
Q Consensus 134 ~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 212 (502)
...|.+++|..+|++.. .+...+..+. ..+++++|.++.++. .++.+|..+..++...|++++|++.|.+.
T Consensus 1060 i~lglyEEAf~IYkKa~------~~~~A~~VLie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD------VNTSAVQVLIEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HhCCCHHHHHHHHHHcC------CHHHHHHHHHHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 88999999999999864 2222233333 788999999999877 44778889999999999999999999664
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHH
Q 046039 213 QEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNS 292 (502)
Q Consensus 213 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 292 (502)
.|...|..++.++.+.|+++++.+++....+.. +++.+.+.++.+|++.+++++...++ ...+...|..
T Consensus 1132 ------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 ------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQ 1200 (1630)
T ss_pred ------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHH
Confidence 467788889999999999999999999888765 34444456899999999998755554 3445567778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcC
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAG 372 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 372 (502)
++..|...|++++|..+|... ..|..++.++.+.|+++.|.+.+++.. +..+|..+..+|...|
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhh
Confidence 999999999999999999884 478899999999999999999998762 5688888999999999
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc--CCchHHHHHHH
Q 046039 373 LLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS--YQFEEAMEERL 448 (502)
Q Consensus 373 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 448 (502)
++..|......+. .++..+..++..|.+.|.+++|+.+++.++.++|.+..++.-|+.+|.+- ++..++.++|.
T Consensus 1265 Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1265 EFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999877654 34556778999999999999999999999999999999998888887764 44444444443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-18 Score=153.48 Aligned_cols=247 Identities=8% Similarity=0.021 Sum_probs=202.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPSE--FTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCG 270 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 270 (502)
++-....|++..|+..++..... .|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 44566789999999999876543 3433 3556778899999999999876654 23567888899999999999
Q ss_pred ChHHHHHHHhcCCC----C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 046039 271 CPERALQVFNTVPK----K-GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYF 345 (502)
Q Consensus 271 ~~~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (502)
+.++|++.++++.. + ++..+..+...+...|++++|+..+++ ..+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998642 2 455778888999999999999999987 457788999999999999999999999
Q ss_pred HHhhhhcCCCCChhHH---HHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046039 346 TLMTETYKIKPSIKHY---SCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 420 (502)
+.+.+. .|+.... ..++..+...|++++|..+|+++... .++..|+.++.++.+.|++++|...++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999875 2443211 22334445569999999999998652 478899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchH-HHHHHHHhhhcC
Q 046039 421 KNESCGYVLMSNLYAASYQFEE-AMEERLLMKEVK 454 (502)
Q Consensus 421 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 454 (502)
|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987 568888887543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-18 Score=156.52 Aligned_cols=369 Identities=11% Similarity=0.057 Sum_probs=184.6
Q ss_pred chHHHHHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhc
Q 046039 2 KDLKKIHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVT 81 (502)
Q Consensus 2 ~~~~~i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 81 (502)
++|....+.+ +++.+|..+...+ .+.|++++|++.|.+. +|..+|..++.++...|++++|+..++...+.
T Consensus 20 d~A~~fae~~------~~~~vWs~La~A~-l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 20 DRAYEFAERC------NEPAVWSQLAKAQ-LQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC------CChHHHHHHHHHH-HHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 3455555555 4456999888888 9999999999999765 67779999999999999999999977777653
Q ss_pred CCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHH
Q 046039 82 SPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSM 161 (502)
Q Consensus 82 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l 161 (502)
.+++.+...++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+. .|..+
T Consensus 91 ---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------n~~~L 154 (449)
T 1b89_A 91 ---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRL 154 (449)
T ss_dssp ---------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT------CHHHH
T ss_pred ---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh------hHHHH
Confidence 4557788999999999999999988884 3677899999999999999999999999884 89999
Q ss_pred HHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHH
Q 046039 162 IIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGE 241 (502)
Q Consensus 162 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 241 (502)
+.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.....++..|.+.|.++++.
T Consensus 155 A~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999 48999999999999999999996655542 233344557889999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhc--CChHHHHHHHhcCCC--------CCcchHHHHHHHHHhcCChHHHHHHHH
Q 046039 242 WIHNFLVTNCFELNTIVVTAIIDMYCKC--GCPERALQVFNTVPK--------KGLSCWNSMVFGLAMNGYENEAIKLFS 311 (502)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (502)
.+++...... +-....|+-|..+|++- ++..+.++.|..-.. .+...|..+.-.|...++++.|...
T Consensus 228 ~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t-- 304 (449)
T 1b89_A 228 TMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT-- 304 (449)
T ss_dssp HHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH--
T ss_pred HHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH--
Confidence 9999998765 55677788887777764 455666666654332 1345899999999999999998874
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----
Q 046039 312 GLQSS-NLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS---- 386 (502)
Q Consensus 312 ~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 386 (502)
|.+. ...-+...|..++.--....-+-+|+.++- .. .+...+.|+.++...=|...+..+|++...
T Consensus 305 -m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~-----~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~ 375 (449)
T 1b89_A 305 -MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF-----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLV 375 (449)
T ss_dssp -HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH-----CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTT
T ss_pred -HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc-----CHHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHH
Confidence 4443 122344555555443333323334444433 21 222355566666666666666666665532
Q ss_pred ---------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 387 ---------DPDAIIWGSLLSACRKHGNIEMAKQAAK 414 (502)
Q Consensus 387 ---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 414 (502)
..+..+=.++-..|....+++.-..-.+
T Consensus 376 ~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 376 KPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 2233333455556667777665554443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-18 Score=159.57 Aligned_cols=272 Identities=11% Similarity=-0.084 Sum_probs=162.6
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHH
Q 046039 51 NLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTII 130 (502)
Q Consensus 51 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 130 (502)
+...|..+...+.+.|++++|+..|+.+.+. .+.+..++..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4455677777777777777777777777664 23345567777777777777777777777777764 33566677777
Q ss_pred HHHHhCCChhHHHHHHhhcCC-CCC-eeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHH
Q 046039 131 YMYANCGFLSEARLMFDEVDT-EFD-VVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALEL 208 (502)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 208 (502)
.+|...|++++|...|+++.. .|+ ...+..+ ......+..+...+...|++++|+..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~---------------------~~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNK---------------------KGSPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------------------------------CCHHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhh---------------------ccchHHHHHHHHHHhhhhhHHHHHHH
Confidence 777777777777777766542 111 1111100 00122233445566666666666666
Q ss_pred HHHHHHCCCCC--CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--
Q 046039 209 FREMQEQNIKP--SEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK-- 284 (502)
Q Consensus 209 ~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 284 (502)
|+++.+.. +. +..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+
T Consensus 200 ~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 200 YLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66666653 22 45666666666666667777766666666654 33456666666666677777777766665543
Q ss_pred -CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 046039 285 -KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLK-----------PDYISFIAVLTACNHSGKVNQAKDYFTLM 348 (502)
Q Consensus 285 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 348 (502)
.+..+|..+..+|...|++++|...|+++.+.... .+...+..+..++...|+.+.+....+.-
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 23446666777777777777777777776653211 12466777778888888888887776653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-16 Score=154.69 Aligned_cols=382 Identities=10% Similarity=-0.026 Sum_probs=235.1
Q ss_pred ChHHHHHHHHhhhCCCCChhHHHHHhccCCC------------CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcC---C
Q 046039 19 DPIAASRILAFCTSPAGDINYAYLVFTQIKK------------PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTS---P 83 (502)
Q Consensus 19 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~ 83 (502)
....||.+-..+ ...|++++|++.|++..+ ....+|+.+..+|...|++++|...+++..+.. .
T Consensus 50 ~a~~yn~Lg~~~-~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLK-HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 355677666666 889999999999987532 234578999999999999999999999876421 1
Q ss_pred C--CCC-cccHHHHHHHHHh--cCCchhHHHHHHHHHHhCCCCchhHHHHHHHH---HHhCCChhHHHHHHhhcCC--CC
Q 046039 84 I--QPQ-RLTYPSLFKAYAQ--LGLARDGAQLHGRVVKQGLEFDQFIHNTIIYM---YANCGFLSEARLMFDEVDT--EF 153 (502)
Q Consensus 84 ~--~p~-~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~--~~ 153 (502)
- .++ ..++.....++.. .+++++|+..|++.++..+ -++..+..+..+ +...++.++|.+.+++... +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 111 2345555445544 4578999999999999753 356666555555 4456788888888877543 34
Q ss_pred CeeeHHHHHHHHHh----cCCHHHHHHHHHccCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046039 154 DVVAWNSMIIGLAK----CGEIDESRRLFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVS 226 (502)
Q Consensus 154 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 226 (502)
+...+..+...+.. .++.++|.+.+++... .+..++..+...|...|++++|+..+++..+.. |.+...+..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 45556555555544 5677899999988733 467788999999999999999999999999875 556777777
Q ss_pred HHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCh
Q 046039 227 LLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYE 303 (502)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 303 (502)
+..++...+.... ... . ..........+.++.|...+++..+ ....++..+...+...|++
T Consensus 287 lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 287 IGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccH
Confidence 7666543211110 000 0 0001111122335667777766543 3456888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 046039 304 NEAIKLFSGLQSSNLKPDYI--SFIAVLT-ACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKL 380 (502)
Q Consensus 304 ~~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 380 (502)
++|+..|++..+....|... .+..+.. .....|++++|+..|++..+. .|+....... ...+..+
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~---------~~~l~~~ 418 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKM---------KDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHH---------HHHHHHH
Confidence 99999999998865443322 2222222 235678999999999998753 4443322222 2233334
Q ss_pred HHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 381 IRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 381 ~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
+++... . .++.+|..++.+|...|++++|++.|+++++++|.+|.....+|
T Consensus 419 ~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 433321 2 36679999999999999999999999999999999888776655
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=153.09 Aligned_cols=261 Identities=8% Similarity=-0.025 Sum_probs=176.9
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHccCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046039 156 VAWNSMIIGLAKCGEIDESRRLFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACA 232 (502)
Q Consensus 156 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 232 (502)
..+..+...+...|++++|..+|+++.+ .+...+..+..++...|++++|...++++.+.. +.+...+..+..++.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3445555555556666666666655522 245566666677777777777777777776654 445666666777777
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhHHHHH--------------HH-HHHhcCChHHHHHHHhcCCC---CCcchHHHHH
Q 046039 233 KLGAIRQGEWIHNFLVTNCFELNTIVVTAI--------------ID-MYCKCGCPERALQVFNTVPK---KGLSCWNSMV 294 (502)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 294 (502)
..|++++|...++.+.+... .+...+..+ .. .+...|++++|...++++.+ .+...+..++
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 77777777777777766532 122222222 22 35566777777777776543 2345777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCH
Q 046039 295 FGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLL 374 (502)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 374 (502)
..+...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+.+. .+.+...+..+..+|.+.|++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccH
Confidence 88888888888888888877753 235677888888888888888888888888764 234567778888888888888
Q ss_pred HHHHHHHHhCCCC-C-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046039 375 EEAEKLIRSMPSD-P-------------DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDK 421 (502)
Q Consensus 375 ~~A~~~~~~~~~~-~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 421 (502)
++|...++++... | +...|..++.++...|++++|..+++++++..|
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 8888888776431 3 356788888888899999999888887766443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=9e-17 Score=141.81 Aligned_cols=223 Identities=13% Similarity=-0.001 Sum_probs=132.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC--c----hhHHH
Q 046039 187 VSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFEL--N----TIVVT 260 (502)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 260 (502)
..+..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...++.+.+..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 455666677777777777777777776665 566667777777777777777777777666543111 1 23444
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHH
Q 046039 261 AIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQ 340 (502)
Q Consensus 261 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 340 (502)
.+... +...|++++|+..|++.... .|+.. .+...|++++
T Consensus 84 ~l~~~-------------------------------~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~ 123 (258)
T 3uq3_A 84 RIGNA-------------------------------YHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEK 123 (258)
T ss_dssp HHHHH-------------------------------HHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHH
T ss_pred HHHHH-------------------------------HHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHH
Confidence 44444 44445555555555444442 22321 2333455666
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 341 AKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 341 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
|...++.+.. ..+.+...+..++..+...|++++|...|+++.. ..+...|..++.++...|++++|+..++++++
T Consensus 124 a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 124 ELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666666554 2222344555566666666666666666665543 12455666666666666666667776666666
Q ss_pred cCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 419 LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 419 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
.+|+++..+..++.+|...|++++|...++++.+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 66666666666666666667766666666665543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=139.67 Aligned_cols=191 Identities=15% Similarity=0.039 Sum_probs=142.0
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 046039 223 TMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGY 302 (502)
Q Consensus 223 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 302 (502)
.+..+...+...|++++|..+++.+.+.. .+..+ |..++..+...|+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~-------------------------------~~~~~~~~~~~~~ 53 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITY-------------------------------LNNRAAAEYEKGE 53 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHH-------------------------------HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHH-------------------------------HHHHHHHHHHccc
Confidence 44445555555555555555555555544 34444 4444455555555
Q ss_pred hHHHHHHHHHHHHCCC--CCC----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 046039 303 ENEAIKLFSGLQSSNL--KPD----YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEE 376 (502)
Q Consensus 303 ~~~a~~~~~~~~~~~~--~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 376 (502)
+++|+..+++..+... .|+ ...+..+..++...|++++|...++.+... .|+. ..+...|++++
T Consensus 54 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 54 YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEK 123 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHH
Confidence 5555555555544211 112 577888999999999999999999999865 3443 45667789999
Q ss_pred HHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 377 AEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 377 A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
|...++++... | +...+..++..+...|++++|...++++++..|+++.++..++.+|...|++++|+..++++.+..
T Consensus 124 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999987643 3 566888999999999999999999999999999999999999999999999999999999998765
Q ss_pred Cc
Q 046039 455 IE 456 (502)
Q Consensus 455 ~~ 456 (502)
..
T Consensus 204 ~~ 205 (258)
T 3uq3_A 204 PN 205 (258)
T ss_dssp TT
T ss_pred HH
Confidence 43
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=136.27 Aligned_cols=196 Identities=13% Similarity=-0.004 Sum_probs=143.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046039 253 ELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVL 329 (502)
Q Consensus 253 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 329 (502)
+++...+..+...+.+.|++++|...|++..+. ++..|..+...+...|++++|+..|++..+..+ .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 345556666666777777777777777765543 334666777777777777777777777777532 2556777777
Q ss_pred HHHhcC-----------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHH
Q 046039 330 TACNHS-----------GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLL 397 (502)
Q Consensus 330 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~ 397 (502)
.++... |++++|+..+++..+. .+.+...+..+..+|...|++++|+..|+++.. ..++..+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 777777 9999999999998874 234577888899999999999999999988642 16778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 398 SACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 398 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.++...|++++|+..|+++++.+|+++.++..++.++...|++++|++.+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999887754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-16 Score=138.94 Aligned_cols=244 Identities=12% Similarity=0.016 Sum_probs=134.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHh
Q 046039 191 SMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELN--TIVVTAIIDMYCK 268 (502)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 268 (502)
.....+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+....++ ...+..+...|..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34444444555555555555544432 22333444444444455555555555554444211111 1124444555555
Q ss_pred cCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 046039 269 CGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYF 345 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (502)
.|++++|...|++..+ .+..+|..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|...|
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544332 123355555555555555555555555555442 224455555552333344777777777
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhCCC----CCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 046039 346 TLMTETYKIKPSIKHYSCMVDALGRAGL---LEEAEKLIRSMPS----DPD------AIIWGSLLSACRKHGNIEMAKQA 412 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~----~~~------~~~~~~l~~~~~~~~~~~~A~~~ 412 (502)
+.+.+. .+.+...+..+..++...|+ +++|...++++.. .|+ ...|..++..|...|++++|.+.
T Consensus 166 ~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 166 VKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777653 23335566666677766666 6666666655432 133 24778899999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcC
Q 046039 413 AKQIIELDKNESCGYVLMSNLYAASY 438 (502)
Q Consensus 413 ~~~~~~~~p~~~~~~~~l~~~~~~~g 438 (502)
++++++++|+++.+...+..+....+
T Consensus 244 ~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 244 WKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999888877655443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-15 Score=145.92 Aligned_cols=376 Identities=8% Similarity=-0.035 Sum_probs=230.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCc---hhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 046039 57 TIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLA---RDGAQLHGRVVKQGLEFDQFIHNTIIYMY 133 (502)
Q Consensus 57 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 133 (502)
.+...+.+.|++++|.++|+...+. | +...+..+...+...|+. ++|...|+...+. ++..+..+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 3556677788889999999888776 4 344455566666667777 8888888888754 455566666655
Q ss_pred HhCC-----ChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHH---HHHHHHccC-CCChhhHHHHHHHHHhCCChHH
Q 046039 134 ANCG-----FLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDE---SRRLFDKMV-SRNTVSWNSMISGYVRNVKFKE 204 (502)
Q Consensus 134 ~~~g-----~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 204 (502)
...| ++++|...|++.....+...+..|...|...+..+. +.+.+.... ..++..+..+...|...+.+++
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 5554 678888888877655566677788877777655433 344444332 2356677778888888775555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc----CChHHHHH
Q 046039 205 ALELFREMQEQNIKPSEFTMVSLLNACAKLG---AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKC----GCPERALQ 277 (502)
Q Consensus 205 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~ 277 (502)
+......+.+.-...++..+..+...+...| +.++|...|+...+.| +++...+..|...|... +++++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4444333322111222236777777777788 8888888888888877 44555445677777554 68888888
Q ss_pred HHhcCCCCCcchHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC-----CHHHHHHHHHHhh
Q 046039 278 VFNTVPKKGLSCWNSMVFG-L--AMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSG-----KVNQAKDYFTLMT 349 (502)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~ 349 (502)
.|++....++..+..+... + ...+++++|+.+|++..+.| +...+..+...|. .| ++++|..+|++..
T Consensus 239 ~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 239 LLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 8887773345577777776 4 45788888888888888766 5566666666665 44 8888888888765
Q ss_pred hhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 046039 350 ETYKIKPSIKHYSCMVDALGR----AGLLEEAEKLIRSMPSDPDAIIWGSLLSACRK----HGNIEMAKQAAKQIIELDK 421 (502)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 421 (502)
+-++..+..|...|.. ..++++|..+|++.....++.....|...|.. ..++++|...|+++.+..+
T Consensus 315 -----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 315 -----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp -----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred -----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 2355666667777665 33888888888887665566667777777764 4578888888888877655
Q ss_pred CCcchHHHHHHHHH--hcCCchHHHHHHHHhhh
Q 046039 422 NESCGYVLMSNLYA--ASYQFEEAMEERLLMKE 452 (502)
Q Consensus 422 ~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 452 (502)
.. ....+..+.. ..++.++|..+.++-.+
T Consensus 390 ~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 390 PE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 43 3333433322 23455666666655443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-16 Score=148.49 Aligned_cols=365 Identities=8% Similarity=-0.024 Sum_probs=214.2
Q ss_pred CCCCChhHHHHHhccCCC-CCcchHHHHHHHHhcCCCh---HHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcC-----
Q 046039 32 SPAGDINYAYLVFTQIKK-PNLFIWNTIIRGFSQSSTP---RNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLG----- 102 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----- 102 (502)
.+.|++++|.++|++..+ .+..++..|...+...|+. ++|+..|+...+ . ++..+..+...+...+
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~--~---~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD--T---SPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTGGGTCC---------------------------------CHHHHHHHHHTC--CCHH
T ss_pred HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh--C---CHHHHHHHHHHHHhCCCCCCc
Confidence 456788888888887655 4556666677777777777 788888877763 2 4455666666444444
Q ss_pred CchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH---HHHHHhhcCCCCCeeeHHHHHHHHHhcC----CHHHHH
Q 046039 103 LARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSE---ARLMFDEVDTEFDVVAWNSMIIGLAKCG----EIDESR 175 (502)
Q Consensus 103 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~ 175 (502)
++++|...|+...+.|.. ..+..|...|...+..+. +.+.+.......++..+..+...|...+ ..+.+.
T Consensus 89 ~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 667788888888776632 355666667766554333 3444444332345566667777777766 444555
Q ss_pred HHHHccCCCChhhHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CchHHHHHHHHHHH
Q 046039 176 RLFDKMVSRNTVSWNSMISGYVRNV---KFKEALELFREMQEQNIKPSEFTMVSLLNACAKL----GAIRQGEWIHNFLV 248 (502)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~ 248 (502)
.+++.....++..+..|...|...| ++++|++.|++..+.| +++...+..+...|... +++++|...|+...
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 5666666666777788888888888 7888888888887777 56666556666666554 67788888887776
Q ss_pred HcCCCCchhHHHHHHHH-H--HhcCChHHHHHHHhcCCCC-CcchHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCC
Q 046039 249 TNCFELNTIVVTAIIDM-Y--CKCGCPERALQVFNTVPKK-GLSCWNSMVFGLAMNG-----YENEAIKLFSGLQSSNLK 319 (502)
Q Consensus 249 ~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~ 319 (502)
. -++..+..|... | ...+++++|...|++..+. ++.++..+...|. .| ++++|+.+|++.. .|
T Consensus 245 -~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g-- 316 (452)
T 3e4b_A 245 -P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR-- 316 (452)
T ss_dssp -G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT--
T ss_pred -C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC--
Confidence 3 345556666665 3 4577888888888776654 3456677777666 44 7888888887776 32
Q ss_pred CCHHHHHHHHHHHhc----CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHH
Q 046039 320 PDYISFIAVLTACNH----SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR----AGLLEEAEKLIRSMPSDPDAI 391 (502)
Q Consensus 320 p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 391 (502)
+......+...|.. ..++++|..+|+...+. | +......|..+|.. ..+.++|..+|+......+..
T Consensus 317 -~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 317 -EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-G---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp -CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-T---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred -CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-C---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 45566666665554 33788888888877654 3 33445556666653 347788888887766543333
Q ss_pred HHHHHHHHH--HhcCCHHHHHHHHHHHHh
Q 046039 392 IWGSLLSAC--RKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 392 ~~~~l~~~~--~~~~~~~~A~~~~~~~~~ 418 (502)
....+.... ...++..+|....++..+
T Consensus 392 a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 392 ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 322222221 223345555555555544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-16 Score=137.84 Aligned_cols=241 Identities=10% Similarity=-0.046 Sum_probs=180.6
Q ss_pred hCCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH
Q 046039 198 RNVKFKEALELFREMQEQNI---KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPER 274 (502)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (502)
..|++++|+..|+++.+... +.+...+..+..++...|++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45677888888888776531 1235566777777778888888888888877765 3456777778888888888888
Q ss_pred HHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 275 ALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 275 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
|...|+++.+ .+..++..++..+...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888877654 34567888888899999999999999998875 344444444445556779999999999888764
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 352 YKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PD-----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
.+++...+ .++..+...++.++|...++++... |. ...|..++.+|...|++++|...|+++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 33444444 4677788888999999999888764 32 578899999999999999999999999999998765
Q ss_pred hHHHHHHHHHhcCCchHHHHHH
Q 046039 426 GYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 426 ~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
.+ +.++...|++++|++.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 55788889999998765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-14 Score=128.37 Aligned_cols=225 Identities=9% Similarity=-0.027 Sum_probs=146.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCCchhHHH
Q 046039 185 NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK----LGAIRQGEWIHNFLVTNCFELNTIVVT 260 (502)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 260 (502)
++.++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...|++..+.+ ++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455556666666666666666666666652 233455555555555 666666666666655543 333444
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 046039 261 AIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAM----NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH-- 334 (502)
Q Consensus 261 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 334 (502)
. +...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 79 ~-------------------------------lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 79 L-------------------------------LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp H-------------------------------HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred H-------------------------------HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 4 4444444 556666666666666543 45566666666666
Q ss_pred --CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 046039 335 --SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR----AGLLEEAEKLIRSMPSDPDAIIWGSLLSACRK----HG 404 (502)
Q Consensus 335 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 404 (502)
.+++++|..+|++..+. + +...+..+...|.. .+++++|...|++.....++..+..+...|.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 67777777777776653 2 44555666666766 77777777777776554556677777777777 78
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHhhhcCC
Q 046039 405 NIEMAKQAAKQIIELDKNESCGYVLMSNLYAA----SYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 405 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 455 (502)
++++|+..|+++++.+| +..+..++.+|.. .+++++|.+.+++..+.+.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 88888888888877755 5677778888887 7888888888887776654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-15 Score=138.61 Aligned_cols=247 Identities=9% Similarity=0.064 Sum_probs=202.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-hHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGA-IRQGEWIHNFLVTNCFELNTIVVTAIID 264 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (502)
...|+.+..++.+.|++++|+..++++++.. +-+...|..+..++...|+ +++|...++++++.. +.+..++..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567888888889999999999999998875 5677888888888889996 999999999999876 447788888999
Q ss_pred HHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-CCCHHH
Q 046039 265 MYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH-SGKVNQ 340 (502)
Q Consensus 265 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~ 340 (502)
++...|++++|+..|+++.+. +..+|..+..++...|++++|+..|+++++.+.. +...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999887653 4558888999999999999999999999986543 67888888888888 566577
Q ss_pred H-----HHHHHHhhhhcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--------
Q 046039 341 A-----KDYFTLMTETYKIKPSIKHYSCMVDALGRAG--LLEEAEKLIRSMPSDP-DAIIWGSLLSACRKHG-------- 404 (502)
Q Consensus 341 a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~-------- 404 (502)
| +..+++.... .+-+...|..+..++...| ++++|.+.+.++...| +...+..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 7 5788888763 2345778888888888888 6899999998883334 5678889999998874
Q ss_pred C-HHHHHHHHHHH-HhcCCCCcchHHHHHHHHHhc
Q 046039 405 N-IEMAKQAAKQI-IELDKNESCGYVLMSNLYAAS 437 (502)
Q Consensus 405 ~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 437 (502)
+ .++|+++|+++ .+++|.....|..++..+...
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 899999999999998776544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.6e-16 Score=145.28 Aligned_cols=264 Identities=13% Similarity=-0.026 Sum_probs=152.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCchHHHHHHHHHHHHc----CCC-CchhH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPS----EFTMVSLLNACAKLGAIRQGEWIHNFLVTN----CFE-LNTIV 258 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 258 (502)
.+......+...|++++|...|+++.+.+ +.+ ...+..+...+...|+++.|...++++.+. +.. ....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444555555566666666665555542 222 234445555555556666666555554432 111 11334
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCC-----C----cchHHHHHHHHHhcCC--------------------hHHHHHH
Q 046039 259 VTAIIDMYCKCGCPERALQVFNTVPKK-----G----LSCWNSMVFGLAMNGY--------------------ENEAIKL 309 (502)
Q Consensus 259 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~--------------------~~~a~~~ 309 (502)
+..+...|...|++++|...+++..+. + ..++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 455555566666666666555544321 1 1255556666666666 6666666
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHH
Q 046039 310 FSGLQSS----NLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS----IKHYSCMVDALGRAGLLEEAEKL 380 (502)
Q Consensus 310 ~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 380 (502)
+++.... +..| ...++..+...+...|++++|...+++......-.++ ...+..+...|...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 6554431 1111 1235666666777777777777777776543111111 23566677777777888877777
Q ss_pred HHhCCCC----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHHH
Q 046039 381 IRSMPSD----PD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE------SCGYVLMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 381 ~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~ 446 (502)
+++.... ++ ..++..++..|...|++++|...++++++..+.. ..++..++.+|...|++++|...
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7665421 11 4466777777788888888888888877654332 45677777788888888888887
Q ss_pred HHHhhh
Q 046039 447 RLLMKE 452 (502)
Q Consensus 447 ~~~~~~ 452 (502)
+++..+
T Consensus 330 ~~~al~ 335 (406)
T 3sf4_A 330 AEKHLE 335 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-14 Score=126.58 Aligned_cols=233 Identities=11% Similarity=-0.017 Sum_probs=176.5
Q ss_pred CCeeeHHHHHHHHHhcCCHHHHHHHHHccCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046039 153 FDVVAWNSMIIGLAKCGEIDESRRLFDKMVSR-NTVSWNSMISGYVR----NVKFKEALELFREMQEQNIKPSEFTMVSL 227 (502)
Q Consensus 153 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 227 (502)
.++.++..+...+...|++++|+..|++..++ ++.++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 45567788889999999999999999998665 56788889999999 999999999999999876 67788888
Q ss_pred HHHHhc----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 046039 228 LNACAK----LGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYE 303 (502)
Q Consensus 228 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 303 (502)
...+.. .+++++|...+++..+.+ +...+..+...|.... ...+++
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~~~ 130 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTRDF 130 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCCCH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------CcccCH
Confidence 888888 999999999999888764 4455555555555400 004555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----cCCHH
Q 046039 304 NEAIKLFSGLQSSNLKPDYISFIAVLTACNH----SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR----AGLLE 375 (502)
Q Consensus 304 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 375 (502)
++|+..|++..+.+ +...+..+...+.. .+++++|..+|+...+. + +...+..+...|.. .++++
T Consensus 131 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 131 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHH
Confidence 55555555555543 44555556666665 77888888888877664 2 45666777788888 88888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcc
Q 046039 376 EAEKLIRSMPSDPDAIIWGSLLSACRK----HGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 376 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
+|...|++.....+...+..+...|.. .+++++|.+.|+++++.+|+++.
T Consensus 204 ~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 204 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 888888877655457778888888888 88999999999999988886543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=143.90 Aligned_cols=264 Identities=10% Similarity=-0.059 Sum_probs=181.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCchHHHHHHHHHHHHcC-----CCCchhHH
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQNIKPSE----FTMVSLLNACAKLGAIRQGEWIHNFLVTNC-----FELNTIVV 259 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~ 259 (502)
+..+...+...|++++|+..|+++.+.+ +.+. ..+..+..++...|++++|...++++.+.. .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3345556666777777777777766653 2232 355666666667777777777776665431 12234556
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC---------CcchHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 046039 260 TAIIDMYCKCGCPERALQVFNTVPKK---------GLSCWNSMVFGLAMNGY-----------------ENEAIKLFSGL 313 (502)
Q Consensus 260 ~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~ 313 (502)
..+...|...|++++|...+++..+. ...++..+...|...|+ +++|+..+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 66677777777777777776655432 12266667777777777 77777777765
Q ss_pred HHC----CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046039 314 QSS----NLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS----IKHYSCMVDALGRAGLLEEAEKLIRSM 384 (502)
Q Consensus 314 ~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 384 (502)
.+. +..+ ....+..+...+...|++++|...+++..+...-.++ ...+..+..+|...|++++|...+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 442 1111 2346777788888899999999999887653211111 236778888899999999999988876
Q ss_pred CCC----C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 385 PSD----P----DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE------SCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 385 ~~~----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
... . ...++..++..+...|++++|...++++++..+.. ..++..++.+|...|++++|..++++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 531 1 24577889999999999999999999998864432 447888999999999999999999887
Q ss_pred hhc
Q 046039 451 KEV 453 (502)
Q Consensus 451 ~~~ 453 (502)
.+.
T Consensus 370 l~~ 372 (411)
T 4a1s_A 370 LQL 372 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=131.51 Aligned_cols=194 Identities=11% Similarity=0.028 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046039 257 IVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACN 333 (502)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 333 (502)
..+..+...+...|++++|...|+++.+. +...+..++..+...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34444455555555555555555544332 23355556666666666666666666666543 225566666677777
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHH
Q 046039 334 HSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQ 411 (502)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 411 (502)
..|++++|...++.+.+. .+.+...+..++..+...|++++|...++++.. ..+...+..++..+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777653 234556666677777777777777777766543 1356677777777777777777777
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 412 AAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 412 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
.++++++..|+++.++..++.+|...|++++|...++++.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777777777777777777777777777777777777654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.3e-15 Score=125.66 Aligned_cols=207 Identities=15% Similarity=0.052 Sum_probs=103.0
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 046039 184 RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAII 263 (502)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (502)
+++..+..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...++++++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 345566667777777777777777777777654 5566667777777777777777777777777664 33455566666
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHH
Q 046039 264 DMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKD 343 (502)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 343 (502)
.++...+.. . .. .+...|++++|+..|++..+..+ -+...+..+..++...|++++|+.
T Consensus 81 ~~~~~~~~~---------~--~~---------~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 81 EAYVALYRQ---------A--ED---------RERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHHHT---------C--SS---------HHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhhhh---------h--hh---------hcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHH
Confidence 666655000 0 00 00112444444444444444321 133444444445555555555555
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 046039 344 YFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQI 416 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 416 (502)
.|++..+. . .+...+..+..+|...|++++|...|+++.. .| +...+..++.++...|++++|+..+++.
T Consensus 140 ~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 140 SLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555443 2 3444444555555555555555555554432 12 3444455555555555555555555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.3e-17 Score=160.45 Aligned_cols=149 Identities=10% Similarity=0.137 Sum_probs=122.9
Q ss_pred ChHHHHHHHHhhhCCCCChhHHHHHhccCC-------CCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccH
Q 046039 19 DPIAASRILAFCTSPAGDINYAYLVFTQIK-------KPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTY 91 (502)
Q Consensus 19 ~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 91 (502)
-..+||++|..| ++.|++++|..+|+.|. .||+.+||+||.+|++.|++++|.++|++|.+. |+.||..||
T Consensus 126 ~~~TynaLIdgl-cK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCC-LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred HHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHH
Confidence 356899999999 99999999999997753 499999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHhcCCc-hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCC----CCeeeHHHHHHHHH
Q 046039 92 PSLFKAYAQLGLA-RDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTE----FDVVAWNSMIIGLA 166 (502)
Q Consensus 92 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~ 166 (502)
+++|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++...++...+..+ |.+.+...|.+.|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999987776654444443333333221 22445556667777
Q ss_pred hcC
Q 046039 167 KCG 169 (502)
Q Consensus 167 ~~~ 169 (502)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 644
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-16 Score=155.58 Aligned_cols=123 Identities=10% Similarity=0.112 Sum_probs=107.1
Q ss_pred eeHHHHHHHHHhcCCHHHHHHHHHcc-------CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046039 156 VAWNSMIIGLAKCGEIDESRRLFDKM-------VSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLL 228 (502)
Q Consensus 156 ~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 228 (502)
.+|+++|++|++.|++++|.++|+.| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 47888888888888888888888664 46899999999999999999999999999999999999999999999
Q ss_pred HHHhccCch-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 046039 229 NACAKLGAI-RQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQV 278 (502)
Q Consensus 229 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 278 (502)
.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++.+.++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999985 78999999999999999999999998776665444444433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=128.66 Aligned_cols=230 Identities=11% Similarity=-0.027 Sum_probs=189.4
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCcc----hHHHHHH
Q 046039 222 FTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK--KGLS----CWNSMVF 295 (502)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~ 295 (502)
..+......+...|++++|...++.+.+.. +.+...+..+..+|...|++++|+..++++.+ .+.. +|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345567778899999999999999999875 34566888899999999999999999998765 2222 4889999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHH
Q 046039 296 GLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLE 375 (502)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 375 (502)
.+...|++++|+..|++..+... .+...+..+..++...|++++|...+++..+. .+.+...+..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998643 35678899999999999999999999999863 3445677777773444556999
Q ss_pred HHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----cchHHHHHHHHHhcCCchH
Q 046039 376 EAEKLIRSMPS-DP-DAIIWGSLLSACRKHGN---IEMAKQAAKQIIELD---KNE-----SCGYVLMSNLYAASYQFEE 442 (502)
Q Consensus 376 ~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~ 442 (502)
+|...|+++.. .| +...+..++.++...|+ +++|...++++++.. |+. ..++..++.+|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999998864 24 47788889999998888 888999999999865 442 2578889999999999999
Q ss_pred HHHHHHHhhhcCC
Q 046039 443 AMEERLLMKEVKI 455 (502)
Q Consensus 443 A~~~~~~~~~~~~ 455 (502)
|.++++++.+..+
T Consensus 240 A~~~~~~al~~~p 252 (272)
T 3u4t_A 240 ADAAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCc
Confidence 9999999986543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.8e-14 Score=124.48 Aligned_cols=205 Identities=14% Similarity=-0.011 Sum_probs=102.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYC 267 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (502)
.|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~---------- 106 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNAR---------- 106 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH----------
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHH----------
Confidence 34444455555555555555555554432 3334444444444444444444444444444432 11222
Q ss_pred hcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHH
Q 046039 268 KCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP-DYISFIAVLTACNHSGKVNQAKDYFT 346 (502)
Q Consensus 268 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 346 (502)
.+..++..+...|++++|...++++...+..| +...+..+..++...|++++|...++
T Consensus 107 ---------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 165 (252)
T 2ho1_A 107 ---------------------VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFE 165 (252)
T ss_dssp ---------------------HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 23333333444444444444444444311222 23444555555556666666666666
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 347 LMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
.+.+. .+.+...+..++..|...|++++|...++++... .+...+..++..+...|++++|.+.++++++..|+++
T Consensus 166 ~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 166 KSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 65543 1223455555566666666666666666554331 2444555566666666666666666666666666655
Q ss_pred chH
Q 046039 425 CGY 427 (502)
Q Consensus 425 ~~~ 427 (502)
...
T Consensus 244 ~~~ 246 (252)
T 2ho1_A 244 EYQ 246 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-14 Score=125.92 Aligned_cols=198 Identities=9% Similarity=-0.040 Sum_probs=162.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046039 256 TIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTAC 332 (502)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 332 (502)
...+..+...+...|++++|...|+++.+ .+...+..++..+...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34555566666666777777766665543 234567777788888888888888888887754 23678888899999
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHH
Q 046039 333 NHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMA 409 (502)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A 409 (502)
...|++++|..+++.+... +..| +...+..++.+|...|++++|...++++.. .| +...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998862 3444 467788899999999999999999988764 24 578899999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 410 KQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 410 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
...++++++..|+++..+..++.++...|++++|.++++++.+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999987543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-15 Score=136.64 Aligned_cols=265 Identities=13% Similarity=-0.025 Sum_probs=182.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCchHHHHHHHHHHHHc----CC-CCchhHH
Q 046039 189 WNSMISGYVRNVKFKEALELFREMQEQNIKPS----EFTMVSLLNACAKLGAIRQGEWIHNFLVTN----CF-ELNTIVV 259 (502)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 259 (502)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +. +....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344556666777777777777766653 223 245556666667777777777776665542 11 1124456
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC-----C----cchHHHHHHHHHhcCC--------------------hHHHHHHH
Q 046039 260 TAIIDMYCKCGCPERALQVFNTVPKK-----G----LSCWNSMVFGLAMNGY--------------------ENEAIKLF 310 (502)
Q Consensus 260 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~ 310 (502)
..+...|...|++++|...+++..+. + ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 66677777777777777776654431 1 1266667777777777 77787777
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHH
Q 046039 311 SGLQSS----NLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS----IKHYSCMVDALGRAGLLEEAEKLI 381 (502)
Q Consensus 311 ~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 381 (502)
++.... +..| ....+..+...+...|++++|...++.......-.++ ...+..+...+...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 765432 1111 2346777788888899999999999887653111111 336778888999999999999998
Q ss_pred HhCCCC----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHHHH
Q 046039 382 RSMPSD----PD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE------SCGYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 382 ~~~~~~----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
++.... ++ ..++..++..+...|++++|...++++++..|.. ..++..++.+|...|++++|..++
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 876531 22 4577889999999999999999999998865432 447889999999999999999999
Q ss_pred HHhhhcC
Q 046039 448 LLMKEVK 454 (502)
Q Consensus 448 ~~~~~~~ 454 (502)
+++.+..
T Consensus 327 ~~a~~~~ 333 (338)
T 3ro2_A 327 EKHLEIS 333 (338)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 9987643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-15 Score=129.76 Aligned_cols=216 Identities=13% Similarity=0.055 Sum_probs=141.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046039 185 NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIID 264 (502)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (502)
....|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------- 91 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAA-------- 91 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH--------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Ccch--------
Confidence 34456666666777777777777777776653 4456666666666666666666666666666543 2223
Q ss_pred HHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 046039 265 MYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDY 344 (502)
Q Consensus 265 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 344 (502)
..+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 92 -----------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 92 -----------------------TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 344455555666666666666666666643 23566777888888888999999999
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 345 FTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
++++... .+.+...+..++..+.+.|++++|...|+++.. . .+..++..++.++...|++++|...++++++.+|+
T Consensus 148 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 148 LQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 8888764 244577788888899999999999999988754 2 35778999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHh
Q 046039 423 ESCGYVLMSNLYAA 436 (502)
Q Consensus 423 ~~~~~~~l~~~~~~ 436 (502)
++..+..++.+...
T Consensus 226 ~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 226 HMLALHAKKLLGHH 239 (243)
T ss_dssp CHHHHHHHTC----
T ss_pred hHHHHHHHHHHHhh
Confidence 99888877755433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-14 Score=119.26 Aligned_cols=167 Identities=13% Similarity=0.019 Sum_probs=142.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 046039 286 GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMV 365 (502)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 365 (502)
+...|..+...|...|++++|+..|++..+..+ -+...+..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 345788888888889999999999998888643 36778888899999999999999999998764 344566777788
Q ss_pred HHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 046039 366 DALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEA 443 (502)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 443 (502)
..+...++++.|...+.+... .| +...+..++.++...|++++|++.|+++++.+|+++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 888999999999999887754 23 6778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCC
Q 046039 444 MEERLLMKEVKI 455 (502)
Q Consensus 444 ~~~~~~~~~~~~ 455 (502)
++.+++..+..+
T Consensus 161 ~~~~~~al~~~p 172 (184)
T 3vtx_A 161 VKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHTTH
T ss_pred HHHHHHHHhCCc
Confidence 999999887543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-14 Score=122.14 Aligned_cols=195 Identities=12% Similarity=-0.023 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046039 257 IVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACN 333 (502)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 333 (502)
.++..+...+...|++++|...|+++.+ .+...+..++..+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3344444444444444444444443322 123345555556666666666666666666542 225566667777777
Q ss_pred cC-CCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHH
Q 046039 334 HS-GKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMA 409 (502)
Q Consensus 334 ~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A 409 (502)
.. |++++|...++.+... +..| +...+..+..++...|++++|...++++.. .| +...+..++..+...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 77 7777777777777652 2223 255666777777777777777777776643 23 466777777778888888888
Q ss_pred HHHHHHHHhcCC-CCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 410 KQAAKQIIELDK-NESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 410 ~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
...++++++..| +++..+..++.++...|+.++|..+++.+.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 888888888777 77777777777777788888888777777644
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=133.46 Aligned_cols=227 Identities=8% Similarity=0.053 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-hHHHHHHHhcCCCC---CcchHHHHHHH
Q 046039 221 EFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGC-PERALQVFNTVPKK---GLSCWNSMVFG 296 (502)
Q Consensus 221 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~---~~~~~~~l~~~ 296 (502)
...|..+..++...|++++|...++++++.. +-+..++..+..++...|+ +++|+..|+++.+. +..+|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567777888889999999999999999986 4568889999999999997 99999999988763 45689999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh-cCCHH
Q 046039 297 LAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR-AGLLE 375 (502)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 375 (502)
+...|++++|+..|+++++.+.. +...|..+..++...|++++|+..++++++. .+-+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999997543 7788999999999999999999999999974 34467889999999998 66657
Q ss_pred HH-----HHHHHhCCC-CC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC--------
Q 046039 376 EA-----EKLIRSMPS-DP-DAIIWGSLLSACRKHG--NIEMAKQAAKQIIELDKNESCGYVLMSNLYAASY-------- 438 (502)
Q Consensus 376 ~A-----~~~~~~~~~-~~-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 438 (502)
+| +..|+++.. .| +...|..+...+...| ++++|++.+.++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 477776653 35 6779999999999888 689999999998 899999999999999999975
Q ss_pred -CchHHHHHHHHh-hh
Q 046039 439 -QFEEAMEERLLM-KE 452 (502)
Q Consensus 439 -~~~~A~~~~~~~-~~ 452 (502)
.+++|+++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 258999999998 54
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-13 Score=119.31 Aligned_cols=210 Identities=12% Similarity=0.057 Sum_probs=144.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDM 265 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (502)
+..+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~---------- 75 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDS---------- 75 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC----------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCC----------
Confidence 3445556666666666666666666665543 3345555555555556666666666665555442 112
Q ss_pred HHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHHHHHH
Q 046039 266 YCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMN-GYENEAIKLFSGLQSSNLKPD-YISFIAVLTACNHSGKVNQAKD 343 (502)
Q Consensus 266 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 343 (502)
..++..++..+... |++++|...++++.+.+..|+ ...+..+..++...|++++|..
T Consensus 76 ---------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 76 ---------------------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp ---------------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 23455556666666 777777777777766322333 4667778888888889999999
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046039 344 YFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 420 (502)
.++.+.+. .+.+...+..++.++...|++++|...++++.. . .+...+..+...+...|+.+.|..+++.+.+..
T Consensus 135 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 135 YLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 88888764 234577788888889999999999999887754 2 356677778888899999999999999999999
Q ss_pred CCCcchHHHH
Q 046039 421 KNESCGYVLM 430 (502)
Q Consensus 421 p~~~~~~~~l 430 (502)
|+++.....+
T Consensus 213 p~~~~~~~~l 222 (225)
T 2vq2_A 213 PYSEELQTVL 222 (225)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHh
Confidence 9988776554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.5e-15 Score=130.80 Aligned_cols=244 Identities=11% Similarity=-0.001 Sum_probs=140.4
Q ss_pred cCCChHHHHHHHHHhHhcCCCC--CCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH
Q 046039 64 QSSTPRNAILLFIDMLVTSPIQ--PQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSE 141 (502)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 141 (502)
..|++++|+..|+.+.+..... .+..++..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 4466777777777776541111 123456666666677777777777777776664 3356666666666767777776
Q ss_pred HHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 046039 142 ARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSE 221 (502)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 221 (502)
|...|++... ....+..++..+..++...|++++|...|+++.+.. |+.
T Consensus 96 A~~~~~~al~-----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~ 144 (275)
T 1xnf_A 96 AYEAFDSVLE-----------------------------LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PND 144 (275)
T ss_dssp HHHHHHHHHH-----------------------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHHh-----------------------------cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCC
Confidence 6666665441 112245556666666666666677776666666543 222
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc-------chHHHHH
Q 046039 222 FTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL-------SCWNSMV 294 (502)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~l~ 294 (502)
......+..+...|++++|...+....... +++...+. ++..+...++.++|...+....+.++ ..|..++
T Consensus 145 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 222 (275)
T 1xnf_A 145 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLG 222 (275)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHH
Confidence 233333334455566777777776666543 22333333 55556666666677777766655432 4566677
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 046039 295 FGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYF 345 (502)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (502)
..+...|++++|...|++..... |+. +.....++...|++++|++.+
T Consensus 223 ~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 223 KYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 77777777777777777777643 321 112233445556666666654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9.1e-12 Score=123.03 Aligned_cols=413 Identities=9% Similarity=-0.023 Sum_probs=288.8
Q ss_pred HHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCC---CCcchHHHHHHHHhcCCC---hHHHHHHHHHhHhc
Q 046039 8 HAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKK---PNLFIWNTIIRGFSQSST---PRNAILLFIDMLVT 81 (502)
Q Consensus 8 ~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~ 81 (502)
++..++.. +-|...|..++..+ .+.++++.+..+|+.+.. .....|...+..-.+.++ ++.+..+|+.....
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~~~-~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLKHH-VSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHC-cCCHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 34444443 56899999999998 788999999999999876 345678888888888888 99999999999975
Q ss_pred CCCCCCcccHHHHHHHHHhcCCc--------hhHHHHHHHHHH-hCC-CC-chhHHHHHHHHHHh---------CCChhH
Q 046039 82 SPIQPQRLTYPSLFKAYAQLGLA--------RDGAQLHGRVVK-QGL-EF-DQFIHNTIIYMYAN---------CGFLSE 141 (502)
Q Consensus 82 ~~~~p~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~g~~~~ 141 (502)
...+|+...|..-+....+.++. +.+.++|+..+. .|. .+ +..+|...+..... .++++.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 22248888888877766665554 334577777665 455 44 35678777766543 345778
Q ss_pred HHHHHhhcCCCCCe---eeHHHHHHHHHh-------------cCCHHHHHHHHHcc-------CC--CC-----------
Q 046039 142 ARLMFDEVDTEFDV---VAWNSMIIGLAK-------------CGEIDESRRLFDKM-------VS--RN----------- 185 (502)
Q Consensus 142 a~~~~~~~~~~~~~---~~~~~l~~~~~~-------------~~~~~~a~~~~~~~-------~~--~~----------- 185 (502)
+..+|++...-|.. .+|......-.. ..+++.|...+.++ .. |.
T Consensus 213 ~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p 292 (679)
T 4e6h_A 213 IRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLP 292 (679)
T ss_dssp HHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSC
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCC
Confidence 89999988753322 223221111111 11233344444331 10 00
Q ss_pred ---------hhhHHHHHHHHHhCC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHH-HHHHHHH
Q 046039 186 ---------TVSWNSMISGYVRNV-------KFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGE-WIHNFLV 248 (502)
Q Consensus 186 ---------~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~ 248 (502)
...|...+..--..+ ..+.+..+|++++.. ++-+...|...+.-+...|+.+.|. .++++..
T Consensus 293 ~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi 371 (679)
T 4e6h_A 293 KPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ 371 (679)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 123444444333322 134566788888876 3667888888888888889999996 9999998
Q ss_pred HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-------------------------CcchHHHHHHHHHhcCCh
Q 046039 249 TNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK-------------------------GLSCWNSMVFGLAMNGYE 303 (502)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------------~~~~~~~l~~~~~~~g~~ 303 (502)
... +.+...+-..+....+.|+++.|..+|+++... ....|...+....+.|+.
T Consensus 372 ~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l 450 (679)
T 4e6h_A 372 QCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL 450 (679)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH
Confidence 754 556667777888888999999999999887642 112688888888888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC-CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 304 NEAIKLFSGLQSSNLKPDYISFIAVLTACNHS-GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIR 382 (502)
Q Consensus 304 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 382 (502)
+.|..+|.+.++....+....|...+..-.+. ++.+.|..+|+...+. ++.+...+...+......|+.+.|..+|+
T Consensus 451 ~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lfe 528 (679)
T 4e6h_A 451 AASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFE 528 (679)
T ss_dssp HHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999998861122334444333332333 4589999999999985 44566677788888888999999999999
Q ss_pred hCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 383 SMPSD-P----DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 383 ~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
+.... | ....|...+..-.+.|+.+.+..+.+++.+..|+++.+
T Consensus 529 ral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 529 SSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 98764 4 24578888888899999999999999999999998754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=139.70 Aligned_cols=192 Identities=11% Similarity=-0.020 Sum_probs=150.9
Q ss_pred chhHHHHHHHHHHhcCCh-HHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046039 255 NTIVVTAIIDMYCKCGCP-ERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLT 330 (502)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 330 (502)
+...+..+...|...|++ ++|+..|++..+ .+..+|..+...|...|++++|+..|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 344444444455555555 555555544332 22346666777777777888888888888775 466788888888
Q ss_pred HHhcC---------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc--------CCHHHHHHHHHhCCC-CC----
Q 046039 331 ACNHS---------GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRA--------GLLEEAEKLIRSMPS-DP---- 388 (502)
Q Consensus 331 ~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~-~~---- 388 (502)
++... |++++|+..+++..+. .+.+...|..+..+|... |++++|...|+++.. .|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 89888 9999999999999874 244578888999999988 999999999998865 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
+...|..++.+|...|++++|.+.|+++++++|+++..+..++.++...|++++|++.+.++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67899999999999999999999999999999999999999999999999999999755443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=136.41 Aligned_cols=295 Identities=12% Similarity=-0.006 Sum_probs=178.4
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHhhcCC-CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCC
Q 046039 122 DQFIHNTIIYMYANCGFLSEARLMFDEVDT-EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNV 200 (502)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 200 (502)
....+......+...|++++|...|++... .|+.... -..++..+...+...|
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------~~~~~~~l~~~~~~~g 61 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT--------------------------LSAIYSQLGNAYFYLH 61 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH--------------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHH--------------------------HHHHHHHHHHHHHHhc
Confidence 344455556666666666666666665432 1111000 0123444455555555
Q ss_pred ChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC-----CchhHHHHHHHHHHhcC
Q 046039 201 KFKEALELFREMQEQ----NIKP-SEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE-----LNTIVVTAIIDMYCKCG 270 (502)
Q Consensus 201 ~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g 270 (502)
++++|...+++..+. +-.| ....+..+...+...|++++|...+++..+.... ....++..+...|...|
T Consensus 62 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 141 (406)
T 3sf4_A 62 DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 141 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC
Confidence 555555555544321 1111 1233444455555555555555555554432100 01234555555555566
Q ss_pred C--------------------hHHHHHHHhcCCCC---------CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CC
Q 046039 271 C--------------------PERALQVFNTVPKK---------GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNL-KP 320 (502)
Q Consensus 271 ~--------------------~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p 320 (502)
+ +++|...+++..+. ...++..+...+...|++++|+..+++..+... .+
T Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 6 55555555443221 122566777777888888888888777664210 11
Q ss_pred C----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C
Q 046039 321 D----YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS----IKHYSCMVDALGRAGLLEEAEKLIRSMPSD----P 388 (502)
Q Consensus 321 ~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~ 388 (502)
+ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|...+++...- +
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 2 236777888888999999999999887643111111 457778889999999999999998876531 2
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCCchH
Q 046039 389 D----AIIWGSLLSACRKHGNIEMAKQAAKQIIELD------KNESCGYVLMSNLYAASYQFEE 442 (502)
Q Consensus 389 ~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 442 (502)
+ ..++..++..|...|++++|.+.+++++++. +....++..++.++...|+...
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 2 5578889999999999999999999999853 3335678889999988887643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=9e-14 Score=131.68 Aligned_cols=267 Identities=12% Similarity=-0.022 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHhhcCC-CCC-e----eeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHh
Q 046039 125 IHNTIIYMYANCGFLSEARLMFDEVDT-EFD-V----VAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVR 198 (502)
Q Consensus 125 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 198 (502)
.+..+...+...|++++|...|++... .|+ . ..|..+...+...|++++|+..+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~-------------------- 109 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYH-------------------- 109 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHH--------------------
Confidence 344556666777777777777766542 121 1 23444444444455555555444
Q ss_pred CCChHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHh
Q 046039 199 NVKFKEALELFREMQEQ----N-IKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC-----FELNTIVVTAIIDMYCK 268 (502)
Q Consensus 199 ~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 268 (502)
++..+. + .+.....+..+...+...|++++|...++++.+.. .+....++..+...|..
T Consensus 110 -----------~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 110 -----------KHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp -----------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 443321 0 01122334444444445555555555544444321 01123344445555555
Q ss_pred cCC-----------------hHHHHHHHhcCCCC---------CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC
Q 046039 269 CGC-----------------PERALQVFNTVPKK---------GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLK-PD 321 (502)
Q Consensus 269 ~g~-----------------~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~ 321 (502)
.|+ +++|...+++..+. ...++..+...+...|++++|+..+++..+.... ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 555 55555555443221 1225666777777777777777777776552110 11
Q ss_pred ----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCC----CChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C-
Q 046039 322 ----YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIK----PSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD----P- 388 (502)
Q Consensus 322 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~- 388 (502)
...+..+..++...|++++|...+++......-. .....+..+..+|...|++++|...+++.... +
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 2367778888889999999999998876532111 11466778888999999999999999877531 1
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 389 ---DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 389 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
...++..++.+|...|++++|.+.+++++++.+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 2447788999999999999999999999987654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-12 Score=115.50 Aligned_cols=220 Identities=11% Similarity=0.039 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCch-------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046039 203 KEALELFREMQEQNIKPSEFTMVSLLNACA-------KLGAI-------RQGEWIHNFLVTNCFELNTIVVTAIIDMYCK 268 (502)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (502)
++|...|+++++.. +.+...|..++..+. ..|++ ++|..+|++.++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777653 556666666665554 24664 6777777777763223345567777777777
Q ss_pred cCChHHHHHHHhcCCCCC---cc-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hcCCCHHHHHH
Q 046039 269 CGCPERALQVFNTVPKKG---LS-CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTAC-NHSGKVNQAKD 343 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~ 343 (502)
.|++++|..+|+++.+.+ .. .|..++..+.+.|++++|..+|++..+.+. ++...|...+... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777665432 22 677777777777778888888877776532 2334444333332 23578888888
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046039 344 YFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS----DP--DAIIWGSLLSACRKHGNIEMAKQAAKQII 417 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 417 (502)
+|+...+. .+.+...+..++..+.+.|++++|..+|+++.. .| ....|..++..+.+.|+.+.|..++++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88877764 234566777777777778888888888877654 22 34577777777777888888888888888
Q ss_pred hcCCCCcch
Q 046039 418 ELDKNESCG 426 (502)
Q Consensus 418 ~~~p~~~~~ 426 (502)
+..|+++..
T Consensus 269 ~~~p~~~~~ 277 (308)
T 2ond_A 269 TAFREEYEG 277 (308)
T ss_dssp HHTTTTTSS
T ss_pred HHccccccc
Confidence 877775543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-13 Score=127.40 Aligned_cols=227 Identities=8% Similarity=-0.028 Sum_probs=118.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC------CchhHHH
Q 046039 192 MISGYVRNVKFKEALELFREMQEQ----NIKP-SEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE------LNTIVVT 260 (502)
Q Consensus 192 l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 260 (502)
....+...|++++|+..|++..+. +-++ ...++..+..++...|+++.|...+.+..+.... ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455666777777777777777653 1111 2345666667777777777777777766653111 1133455
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC-----C----cchHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 046039 261 AIIDMYCKCGCPERALQVFNTVPKK-----G----LSCWNSMVFGLAMNGYENEAIKLFSGLQSS----NL-KPDYISFI 326 (502)
Q Consensus 261 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~ 326 (502)
.+..+|...|++++|...|++..+. + ..++..+...|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5666666666666666666554321 0 114555555555566666666555555441 11 22234455
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhc---CCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 046039 327 AVLTACNHSGKVNQAKDYFTLMTETY---KIKPSIKHYSCMVDALGRAGL---LEEAEKLIRSMPSDPD-AIIWGSLLSA 399 (502)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 399 (502)
.+..++...|++++|...+++..... +.+.....+..+...|...|+ +++|..++++....|+ ...+..++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 55555556666666666655544321 011111223344455555555 5555555555532222 2244445555
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 046039 400 CRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 400 ~~~~~~~~~A~~~~~~~~~ 418 (502)
|...|++++|...++++++
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.8e-14 Score=127.99 Aligned_cols=243 Identities=12% Similarity=0.069 Sum_probs=129.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc------C-
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQ-------NIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTN------C- 251 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 251 (502)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++++.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456778888899999999999999888763 22344566777888888889999988888887764 1
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046039 252 FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTA 331 (502)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 331 (502)
.+....++..+...|...|++++|...|+++.+. .+.............+..+...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------------------~~~~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI------------------------REKVLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------------------------HHHHHCTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH------------------------HHHhcCCCChHHHHHHHHHHHH
Confidence 1223455666677777777777777766654321 0000000001112334444444
Q ss_pred HhcCCCHHHHHHHHHHhhhhc------CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----------C-------
Q 046039 332 CNHSGKVNQAKDYFTLMTETY------KIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD----------P------- 388 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~------- 388 (502)
+...|++++|..+++.+.... ..+.....+..+..+|...|++++|...++++... +
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 555555555555555543320 01112334444555555555555555555444310 0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
....+..+...+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111222233334445555566666666666666666777777777777777777777766654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-13 Score=113.41 Aligned_cols=167 Identities=15% Similarity=0.060 Sum_probs=129.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046039 255 NTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTA 331 (502)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 331 (502)
++.+|..+...|...|++++|+..|++..+ .++.+|..+..+|...|++++|+..+........ .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 445566666666666666666666665543 2344667777777777888888888877776533 356677777788
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHH
Q 046039 332 CNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMA 409 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A 409 (502)
+...++++.+...+...... .+.+...+..+..+|.+.|++++|++.|+++.. .| +..+|..++.+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88899999999999998763 345577888899999999999999999988764 34 677899999999999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 046039 410 KQAAKQIIELDKNES 424 (502)
Q Consensus 410 ~~~~~~~~~~~p~~~ 424 (502)
++.|+++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.2e-13 Score=121.91 Aligned_cols=235 Identities=13% Similarity=0.034 Sum_probs=142.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC-----Cchh
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQ----NIK-PSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE-----LNTI 257 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~ 257 (502)
.+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|...+++..+.... ....
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3444555555555555555555544321 101 11334444555555555555555555554432100 0122
Q ss_pred HHHHHHHHHHhcCC--------------------hHHHHHHHhcCCCC-----C----cchHHHHHHHHHhcCChHHHHH
Q 046039 258 VVTAIIDMYCKCGC--------------------PERALQVFNTVPKK-----G----LSCWNSMVFGLAMNGYENEAIK 308 (502)
Q Consensus 258 ~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~ 308 (502)
++..+...|...|+ +++|...+++.... + ..++..+...+...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44555555555555 55555555443221 1 2256667777777788888887
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHH
Q 046039 309 LFSGLQSSNL-KPD----YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS----IKHYSCMVDALGRAGLLEEAEK 379 (502)
Q Consensus 309 ~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 379 (502)
.+++..+... .++ ..++..+...+...|++++|...++.......-..+ ..++..+...|...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7777654210 011 236777788888889999999988887643111111 4567778888999999999999
Q ss_pred HHHhCCCC----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 380 LIRSMPSD----PD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 380 ~~~~~~~~----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
.++++... ++ ..++..++..|...|++++|...+++++++.+.
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 98876531 22 447788999999999999999999999987654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-13 Score=116.37 Aligned_cols=180 Identities=13% Similarity=0.072 Sum_probs=95.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
.+......+...|++++|+..|++..+....++...+..+..++...|++++|+..++...+. .+.+...+..+..+|
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence 344444444455555555555555444332234444444555555555555555555555431 122344444555555
Q ss_pred HhcCCHHHHHHHHHhCCC-CC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhc
Q 046039 369 GRAGLLEEAEKLIRSMPS-DP-DA-------IIWGSLLSACRKHGNIEMAKQAAKQIIELDKN--ESCGYVLMSNLYAAS 437 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~-~~-~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~ 437 (502)
...|++++|...|++... .| +. ..|..++..+...|++++|++.|+++++.+|+ ++..+..++.+|...
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 555555555555544432 12 22 23444555555555555555555555555555 555555555555555
Q ss_pred CCc---------------------------hHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHH
Q 046039 438 YQF---------------------------EEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLL 490 (502)
Q Consensus 438 g~~---------------------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 490 (502)
|+. ++|+..+++..+. .|++.++...+
T Consensus 167 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------------------------~p~~~~~~~~l 220 (228)
T 4i17_A 167 GADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------------------------SPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------CTTCHHHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------------------CCCCHHHHHHH
Confidence 544 8888888887743 56667777777
Q ss_pred HHHHHH
Q 046039 491 NDLGLL 496 (502)
Q Consensus 491 ~~~~~~ 496 (502)
+++...
T Consensus 221 ~~i~~~ 226 (228)
T 4i17_A 221 DQVKAM 226 (228)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 776543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-13 Score=127.15 Aligned_cols=226 Identities=11% Similarity=-0.009 Sum_probs=176.4
Q ss_pred HHHHHhccCchHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCCC----C------cchHH
Q 046039 227 LLNACAKLGAIRQGEWIHNFLVTN----CFEL-NTIVVTAIIDMYCKCGCPERALQVFNTVPKK----G------LSCWN 291 (502)
Q Consensus 227 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~------~~~~~ 291 (502)
....+...|++++|...+++..+. +.++ ...++..+...|...|+++.|...+.+..+. + ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566678899999999999999874 1111 3567888999999999999999988876531 1 23788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CC-CCChhHHH
Q 046039 292 SMVFGLAMNGYENEAIKLFSGLQSSNLK-PD----YISFIAVLTACNHSGKVNQAKDYFTLMTETY---KI-KPSIKHYS 362 (502)
Q Consensus 292 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~ 362 (502)
.+...|...|++++|+..+++..+.... ++ ..++..+..+|...|++++|...+++..... +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988753111 11 2478888999999999999999999987621 22 33467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC----CC---HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 363 CMVDALGRAGLLEEAEKLIRSMPSD----PD---AIIWGSLLSACRKHGN---IEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~---~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
.+..+|.+.|++++|...+++...- ++ ...+..+...+...|+ +++|+.++++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8999999999999999999887531 22 2235678888889999 77777777776 334555668889999
Q ss_pred HHHhcCCchHHHHHHHHhhhc
Q 046039 433 LYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 433 ~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+|...|++++|..++++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=9.3e-13 Score=131.65 Aligned_cols=162 Identities=15% Similarity=0.102 Sum_probs=140.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 046039 288 SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDA 367 (502)
Q Consensus 288 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (502)
.+|+.|...|.+.|++++|+..|++..+... -+...+..+..++.+.|++++|+..|++..+. -+-+...|..+..+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4677788888888888888888888887532 25678888999999999999999999998864 23357888999999
Q ss_pred HHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 046039 368 LGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 368 ~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 445 (502)
|.+.|++++|++.|+++.. .| +...|..++.+|...|++++|++.|+++++++|+++..+..++.+|...|++++|.+
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 9999999999999988764 34 677999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q 046039 446 ERLLMKE 452 (502)
Q Consensus 446 ~~~~~~~ 452 (502)
.++++.+
T Consensus 167 ~~~kal~ 173 (723)
T 4gyw_A 167 RMKKLVS 173 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-11 Score=113.84 Aligned_cols=263 Identities=11% Similarity=-0.041 Sum_probs=167.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCchHHHHHHHHHHHHcCCC-Cc----hhHHHH
Q 046039 191 SMISGYVRNVKFKEALELFREMQEQNIKPSEF----TMVSLLNACAKLGAIRQGEWIHNFLVTNCFE-LN----TIVVTA 261 (502)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 261 (502)
.....+...|++++|...+++........+.. .+..+...+...|+++.|...+++..+.... .+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34455666777777777777766653222221 3445556666777777777777776653211 11 223455
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-----C------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCHHHHH
Q 046039 262 IIDMYCKCGCPERALQVFNTVPKK-----G------LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLK----PDYISFI 326 (502)
Q Consensus 262 l~~~~~~~g~~~~A~~~~~~~~~~-----~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----p~~~~~~ 326 (502)
+...+...|++++|...+++..+. + ...+..+...+...|++++|...+++....... ....++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 666777778887777777654321 1 124555677777888888888888777653221 1234566
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHHhCCCC-CC-----HHHHHH
Q 046039 327 AVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYS-----CMVDALGRAGLLEEAEKLIRSMPSD-PD-----AIIWGS 395 (502)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~ 395 (502)
.+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.... |. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 777778888888888888888764311111111111 2334467888888888888887642 21 234567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC------CcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 396 LLSACRKHGNIEMAKQAAKQIIELDKN------ESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 396 l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+...+...|++++|...++++++..+. ....+..++.++...|+.++|...+++....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 778888888999998888888764322 1236677788888889998888888777643
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-11 Score=111.87 Aligned_cols=214 Identities=5% Similarity=-0.088 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHH-------hcCCh-------HHHHHHHhcCCC-C---CcchHHHHHHHHHh
Q 046039 238 RQGEWIHNFLVTNCFELNTIVVTAIIDMYC-------KCGCP-------ERALQVFNTVPK-K---GLSCWNSMVFGLAM 299 (502)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~-~---~~~~~~~l~~~~~~ 299 (502)
++|..+|++++... +.++..+..++..+. +.|++ ++|..+|++..+ . +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888999998864 557778888887775 35886 899999998765 2 34589999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH-hcCCHHH
Q 046039 300 NGYENEAIKLFSGLQSSNLKPD-YI-SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALG-RAGLLEE 376 (502)
Q Consensus 300 ~g~~~~a~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 376 (502)
.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 443 33 7888888899999999999999999863 2344555544433322 3799999
Q ss_pred HHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046039 377 AEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIEL---DKN-ESCGYVLMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 377 A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
|..+|+++... | +...|..++..+.+.|++++|..+|+++++. .|+ ...++..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988642 4 6788999999999999999999999999995 453 6778999999999999999999999999
Q ss_pred hhcCCc
Q 046039 451 KEVKIE 456 (502)
Q Consensus 451 ~~~~~~ 456 (502)
.+..++
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 877654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.9e-13 Score=127.50 Aligned_cols=198 Identities=16% Similarity=0.025 Sum_probs=167.0
Q ss_pred hHHHHHHHhcCCC---CCcchHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 046039 272 PERALQVFNTVPK---KGLSCWNSMVFGLAMNGYE-NEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTL 347 (502)
Q Consensus 272 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 347 (502)
++++...++.... .+...+..+...+...|++ ++|+..|++..+... .+...+..+..++...|++++|.+.|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555566654433 3456888999999999999 999999999998643 3578899999999999999999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhc--------CCHHH
Q 046039 348 MTETYKIKPSIKHYSCMVDALGRA---------GLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKH--------GNIEM 408 (502)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~--------~~~~~ 408 (502)
..+. .|+...+..+..+|... |++++|...|+++.. .| +...|..++.+|... |++++
T Consensus 163 al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9854 57778889999999999 999999999998764 34 678999999999999 99999
Q ss_pred HHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchH
Q 046039 409 AKQAAKQIIELDK---NESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPE 485 (502)
Q Consensus 409 A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 485 (502)
|+..|+++++++| +++.++..++.+|...|++++|++.++++.+. .|+..+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------------------------~p~~~~ 293 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--------------------------DPAWPE 293 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CTTCHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHH
Confidence 9999999999999 99999999999999999999999999998754 345556
Q ss_pred HHHHHHHHHHHHHh
Q 046039 486 VYLLLNDLGLLIQE 499 (502)
Q Consensus 486 ~~~~l~~~~~~~~~ 499 (502)
.+..++.++..+++
T Consensus 294 a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 294 PQQREQQLLEFLSR 307 (474)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-12 Score=108.52 Aligned_cols=162 Identities=15% Similarity=0.077 Sum_probs=113.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 046039 290 WNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALG 369 (502)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (502)
+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3334444455555555555555544432 224556666666667777777777777776653 2334566667777777
Q ss_pred hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 046039 370 RAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEER 447 (502)
Q Consensus 370 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 447 (502)
..|++++|...++++.. ..+...+..++..+...|++++|...++++++..|+++.++..++.++...|++++|..++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777776643 2356677888888888888888888888888888888888888888888888888888888
Q ss_pred HHhhhcC
Q 046039 448 LLMKEVK 454 (502)
Q Consensus 448 ~~~~~~~ 454 (502)
+++.+..
T Consensus 168 ~~~~~~~ 174 (186)
T 3as5_A 168 KKANELD 174 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 8876654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-11 Score=115.52 Aligned_cols=227 Identities=8% Similarity=-0.023 Sum_probs=132.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC-----C-CchhHH
Q 046039 191 SMISGYVRNVKFKEALELFREMQEQNI-KP----SEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCF-----E-LNTIVV 259 (502)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~ 259 (502)
.....+...|++++|+..|++..+... .+ ...++..+..++...|+++.|...+++..+... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345556677888888888877765310 12 234566677777777777777777777665321 1 123455
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC-----C----cchHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 046039 260 TAIIDMYCKCGCPERALQVFNTVPKK-----G----LSCWNSMVFGLAMNGYENEAIKLFSGLQS-----SNLKPDYISF 325 (502)
Q Consensus 260 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~ 325 (502)
+.+..+|...|++++|...|++..+. + ..++..+...|...|++++|+..+++..+ .... ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 66677777777777777766654321 1 12555566666666777777666666655 3222 24556
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCC---CCChhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHH
Q 046039 326 IAVLTACNHSGKVNQAKDYFTLMTETYKI---KPSIKHYSCMVDALGRAGL---LEEAEKLIRSMPSDPD-AIIWGSLLS 398 (502)
Q Consensus 326 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~ 398 (502)
..+..++...|++++|...+++......- +.....+..+...|...|+ +.+|...+++....|+ ...+..++.
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 66666677777777777777766553211 1112334444455555666 6666666666443222 234455666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 046039 399 ACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~ 418 (502)
.|...|++++|...|+++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.46 E-value=7.3e-11 Score=116.59 Aligned_cols=403 Identities=8% Similarity=-0.016 Sum_probs=277.2
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCC---chhHHHHHHHHHHhCC-CCchhH
Q 046039 50 PNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGL---ARDGAQLHGRVVKQGL-EFDQFI 125 (502)
Q Consensus 50 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~ 125 (502)
.|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.++ ++.+..+|++.+...+ +|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 57789999999999999999999999999985 55566678888888888888 9999999999988641 378889
Q ss_pred HHHHHHHHHhCCCh--------hHHHHHHhhcC----C-CC-CeeeHHHHHHHHH---------hcCCHHHHHHHHHccC
Q 046039 126 HNTIIYMYANCGFL--------SEARLMFDEVD----T-EF-DVVAWNSMIIGLA---------KCGEIDESRRLFDKMV 182 (502)
Q Consensus 126 ~~~l~~~~~~~g~~--------~~a~~~~~~~~----~-~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 182 (502)
|...+....+.++. +...++|+... . .+ +...|...+.... ..++++.+..+|++.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88888776665554 23346666532 2 22 3457777776544 2345778899999886
Q ss_pred C-CCh---hhHH---HHHHHHH----------hCCChHHHHHHHHHHHHC--CC----C-----------C-----C---
Q 046039 183 S-RNT---VSWN---SMISGYV----------RNVKFKEALELFREMQEQ--NI----K-----------P-----S--- 220 (502)
Q Consensus 183 ~-~~~---~~~~---~l~~~~~----------~~~~~~~a~~~~~~m~~~--~~----~-----------~-----~--- 220 (502)
. |.. .+|. ..-.... ...+++.|...+.++... ++ + | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 5 211 2222 2211110 011234444555443221 11 1 1 1
Q ss_pred HHHHHHHHHHHhccC-------chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH-HHHhcCCCC---Ccch
Q 046039 221 EFTMVSLLNACAKLG-------AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERAL-QVFNTVPKK---GLSC 289 (502)
Q Consensus 221 ~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~---~~~~ 289 (502)
...|...+.---..+ ..+.+..+|++++... +....++-..+..+...|+.++|. .+|+..... +...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 123333333222221 1234567788888764 557888888888888899999996 999876642 3446
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 046039 290 WNSMVFGLAMNGYENEAIKLFSGLQSSNL---------KPD------------YISFIAVLTACNHSGKVNQAKDYFTLM 348 (502)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 348 (502)
|...+......|+++.|..+|+++..... .|+ ...|...+....+.|..+.|..+|..+
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77788888899999999999999886410 132 235777777777889999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---
Q 046039 349 TETYKIKPSIKHYSCMVDALGRA-GLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN--- 422 (502)
Q Consensus 349 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--- 422 (502)
.+.. .......|...+..-.+. ++.+.|..+|+...+. | +...|...+......|+.+.|..+|+++++..|+
T Consensus 461 ~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 8741 122334444433333344 4589999999988753 4 5667888888888999999999999999998773
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 423 ESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 423 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
...++..+...-...|+.+.+.++.+++.+..++
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4567888887777889999999999999876654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.1e-12 Score=107.35 Aligned_cols=206 Identities=8% Similarity=-0.008 Sum_probs=157.3
Q ss_pred CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---cchHHHHH
Q 046039 218 KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG---LSCWNSMV 294 (502)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~ 294 (502)
+.|+..+......+...|++++|...|+..++...+++...+..+..++...|++++|+..|++..+.+ ...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 346678888889999999999999999999998754677777779999999999999999999876544 44788889
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC---hhHHHHH
Q 046039 295 FGLAMNGYENEAIKLFSGLQSSNLKPDY-------ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS---IKHYSCM 364 (502)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 364 (502)
..+...|++++|+..+++..+.... +. ..+..+...+...|++++|+..|+.+.+. .|+ ...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence 9999999999999999998885322 34 45777778888899999999999998753 443 5677777
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 365 VDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
..+|...|+. .++++.. ..+...+.... ....+.+++|+..++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7877766543 2222211 12333443332 34456789999999999999999998888887654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.2e-12 Score=119.43 Aligned_cols=226 Identities=9% Similarity=-0.074 Sum_probs=172.3
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHcCCC-----CchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC-----cchH
Q 046039 226 SLLNACAKLGAIRQGEWIHNFLVTNCFE-----LNTIVVTAIIDMYCKCGCPERALQVFNTVPK-----KG-----LSCW 290 (502)
Q Consensus 226 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~ 290 (502)
.....+...|++++|...++++.+.... ....++..+..+|...|+++.|...+++..+ .+ ..++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3455677899999999999999864211 1356788899999999999999988876543 11 2378
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCCChhHHH
Q 046039 291 NSMVFGLAMNGYENEAIKLFSGLQSS----NLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETY---KIKPSIKHYS 362 (502)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ 362 (502)
+.+...|...|++++|+..|++..+. +..+ ...++..+..++...|++++|...+++..... +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 88999999999999999999888763 1111 23567788889999999999999999987611 2223367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC------CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 363 CMVDALGRAGLLEEAEKLIRSMPS------DPD-AIIWGSLLSACRKHGN---IEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
.+..+|.+.|++++|...+++... .|. ...+..+...+...++ +.+|+..+++. ...|.....+..++.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHH
Confidence 899999999999999999987642 132 3356667777778888 77787777762 233445567889999
Q ss_pred HHHhcCCchHHHHHHHHhhh
Q 046039 433 LYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 433 ~~~~~g~~~~A~~~~~~~~~ 452 (502)
+|...|++++|...+++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-12 Score=116.88 Aligned_cols=212 Identities=13% Similarity=0.075 Sum_probs=122.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC------C
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQ------N-IKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC------F 252 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~ 252 (502)
..++..+...+...|++++|...+++..+. + .+.....+..+...+...|++++|...++++.+.. .
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 446778888889999999999999888754 2 13345677888889999999999999998887641 1
Q ss_pred -CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 046039 253 -ELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKP-DYISFIAVLT 330 (502)
Q Consensus 253 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~ 330 (502)
+....++..+...+...|++++|..+|+++.+. ++.... +..| ...++..+..
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------------------------~~~~~~-~~~~~~~~~~~~la~ 203 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI------------------------YQTKLG-PDDPNVAKTKNNLAS 203 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------------------------HHHTSC-TTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------------HHHHhC-CCCHHHHHHHHHHHH
Confidence 122344555566666666666666555543211 000000 1111 1234555556
Q ss_pred HHhcCCCHHHHHHHHHHhhhhc------CCCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHH
Q 046039 331 ACNHSGKVNQAKDYFTLMTETY------KIKPS-------IKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGS 395 (502)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~ 395 (502)
++...|++++|...++++.... ...+. ...+..+...+...+.+.+|...++..... | ...++..
T Consensus 204 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 283 (311)
T 3nf1_A 204 CYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKN 283 (311)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHH
Confidence 6666666666666666655320 01111 111222223334455555666666666543 3 4568889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 396 LLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 396 l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
++.+|...|++++|.+.+++++++.|.
T Consensus 284 la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 284 LGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999988765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-11 Score=99.98 Aligned_cols=168 Identities=13% Similarity=0.043 Sum_probs=143.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046039 256 TIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTAC 332 (502)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 332 (502)
...+..+...+...|++++|...++++.+. +...+..++..+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 455667788888999999999999988764 34578888899999999999999999998863 34678888889999
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 046039 333 NHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSACRKHGNIEMAK 410 (502)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~ 410 (502)
...|++++|.+.++.+... .+.+...+..++..+...|++++|...++++... .+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999874 3456778888999999999999999999887542 36778999999999999999999
Q ss_pred HHHHHHHhcCCCCcch
Q 046039 411 QAAKQIIELDKNESCG 426 (502)
Q Consensus 411 ~~~~~~~~~~p~~~~~ 426 (502)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988887654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.8e-11 Score=104.18 Aligned_cols=206 Identities=12% Similarity=-0.016 Sum_probs=122.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCC---C---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 046039 255 NTIVVTAIIDMYCKCGCPERALQVFNTVPKK---G---LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNL-KPD-YISFI 326 (502)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~-~~~~~ 326 (502)
+...+..+...+.+.|++++|...|+++.+. + ..++..+..+|...|++++|+..|++..+..+ .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444455555566666666666666655442 1 22455555556666666666666666555321 111 23444
Q ss_pred HHHHHHhc--------CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 046039 327 AVLTACNH--------SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLS 398 (502)
Q Consensus 327 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 398 (502)
.+..++.. .|++++|...|+.+...+ +.+......+.......++. ...+..++.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 44555555 556666666666555432 11111111111110000000 112467788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhc----------CCchHHHHHHHHhhhcCCccCCceeEEE
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNES---CGYVLMSNLYAAS----------YQFEEAMEERLLMKEVKIEKEPGCSLIE 465 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 465 (502)
.|...|++++|+..|+++++..|+++ ..+..++.+|... |++++|...++++.+..+
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence 99999999999999999999999854 5889999999977 889999999999986543
Q ss_pred ECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHhc
Q 046039 466 VDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQEM 500 (502)
Q Consensus 466 ~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 500 (502)
.+|...+....+..+...+++.
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHHh
Confidence 1344456677777777666553
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-12 Score=101.74 Aligned_cols=119 Identities=11% Similarity=-0.041 Sum_probs=76.3
Q ss_pred HHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCH
Q 046039 330 TACNHSGKVNQAKDYFTLMTETYKIKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNI 406 (502)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~ 406 (502)
..+...|++++|+..++.... ..| +...+..+...|.+.|++++|++.|+++.. .| ++..|..++.+|...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 334455666677666666543 222 234445566777777777777777766643 23 566777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH-HHHhh
Q 046039 407 EMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEE-RLLMK 451 (502)
Q Consensus 407 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~ 451 (502)
++|+..|+++++++|+++.++..++.+|.+.|++++|.+. ++++.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777665554 35554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-11 Score=108.25 Aligned_cols=152 Identities=11% Similarity=0.025 Sum_probs=82.4
Q ss_pred hCCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc------CC-CCchhHHHHHH
Q 046039 198 RNVKFKEALELFREMQE-------QNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTN------CF-ELNTIVVTAII 263 (502)
Q Consensus 198 ~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 263 (502)
..|++++|+..+++.++ ...+....++..+...+...|++++|...++++.+. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35566666666655543 222334566777778888888888888888877754 11 22345666777
Q ss_pred HHHHhcCChHHHHHHHhcCCCC--------C---cchHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHH
Q 046039 264 DMYCKCGCPERALQVFNTVPKK--------G---LSCWNSMVFGLAMNGYENEAIKLFSGLQSS------NLKP-DYISF 325 (502)
Q Consensus 264 ~~~~~~g~~~~A~~~~~~~~~~--------~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~~ 325 (502)
..|...|++++|...|+++.+. + ..++..+...+...|++++|...+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 7777777777777776654321 1 123444444455555555555555444432 0011 12334
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhh
Q 046039 326 IAVLTACNHSGKVNQAKDYFTLMT 349 (502)
Q Consensus 326 ~~l~~~~~~~~~~~~a~~~~~~~~ 349 (502)
..+..++...|++++|..+++++.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-11 Score=108.49 Aligned_cols=163 Identities=12% Similarity=-0.033 Sum_probs=103.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhcC-CCHHHHHHHHHHhhhhcCCCCC----h
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSS----NLKP-DYISFIAVLTACNHS-GKVNQAKDYFTLMTETYKIKPS----I 358 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~ 358 (502)
+|+.+..+|...|++++|+..+++..+. |-.+ -..++..+...|... |++++|+..|++..+...-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4455555555555666555555555432 1000 134667777788885 8999998888887753211111 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C---CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch---
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPSD-P---DA-----IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG--- 426 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--- 426 (502)
.++..+...|.+.|++++|...|+++... | .. ..|..++.++...|++++|+..|+++++++|+....
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 46778888899999999999998876531 2 21 257778888999999999999999999988876543
Q ss_pred --HHHHHHHHH--hcCCchHHHHHHHHhh
Q 046039 427 --YVLMSNLYA--ASYQFEEAMEERLLMK 451 (502)
Q Consensus 427 --~~~l~~~~~--~~g~~~~A~~~~~~~~ 451 (502)
+..++.++. ..+++++|+..++.+.
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 444555554 3466777777765543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-10 Score=98.90 Aligned_cols=157 Identities=8% Similarity=-0.044 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-----ChhHHHH
Q 046039 290 WNSMVFGLAMNGYENEAIKLFSGLQSSNLK-PDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP-----SIKHYSC 363 (502)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 363 (502)
+..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+...
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHHH
Confidence 334444555555555555555555443321 13344444555555555555555555555432 23 1223333
Q ss_pred HHHH--HHhcC--CHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------CCCCcchHH
Q 046039 364 MVDA--LGRAG--LLEEAEKLIRSMPSD-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIEL----------DKNESCGYV 428 (502)
Q Consensus 364 l~~~--~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~p~~~~~~~ 428 (502)
|+.+ ....| +..+|..+|+++... |+..+-..+..++...|++++|.+.++.+.+. +|+++.++.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 3333 11222 555555555555433 33222222333555555555555555544443 355555554
Q ss_pred HHHHHHHhcCCchHHHHHHHHhh
Q 046039 429 LMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.++.+....|+ +|.++++++.
T Consensus 260 N~i~l~~~lgk--~a~~l~~qL~ 280 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDLTNQLV 280 (310)
T ss_dssp HHHHHHHHTTC--TTHHHHHHHH
T ss_pred HHHHHHHHhCh--HHHHHHHHHH
Confidence 54444444554 4555555554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-09 Score=99.69 Aligned_cols=231 Identities=12% Similarity=-0.006 Sum_probs=139.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcc-----cHHHHHHHHHhcCCchhHHHHHHHHHHhCCC-Cc----hhHH
Q 046039 57 TIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRL-----TYPSLFKAYAQLGLARDGAQLHGRVVKQGLE-FD----QFIH 126 (502)
Q Consensus 57 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 126 (502)
.....+...|++++|...+++.... .+++.. .+..+...+...|+++.|...+++....... .+ ..++
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344566788888898888888764 222221 3455556677788888888888887653211 11 1234
Q ss_pred HHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCC----ChhhHHHHHHHHHhCCCh
Q 046039 127 NTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSR----NTVSWNSMISGYVRNVKF 202 (502)
Q Consensus 127 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~ 202 (502)
..+...+...|++++|...+++.. .+......+ ....+..+...+...|++
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al-------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAF-------------------------QLINEQHLEQLPMHEFLVRIRAQLLWAWARL 151 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-------------------------HHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-------------------------HHHHHhccccCcHHHHHHHHHHHHHHHhcCH
Confidence 566677777788888777776533 222222221 123456677788888899
Q ss_pred HHHHHHHHHHHHCCCC----CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc--hhHHH----HHHHHHHhcCCh
Q 046039 203 KEALELFREMQEQNIK----PSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELN--TIVVT----AIIDMYCKCGCP 272 (502)
Q Consensus 203 ~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~g~~ 272 (502)
++|...+++....... .....+..+...+...|++++|...+++.......++ ..... ..+..+...|++
T Consensus 152 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence 9988888887654211 1235566777778888888888888888765422211 11111 223346677777
Q ss_pred HHHHHHHhcCCCCCcc-------hHHHHHHHHHhcCChHHHHHHHHHHH
Q 046039 273 ERALQVFNTVPKKGLS-------CWNSMVFGLAMNGYENEAIKLFSGLQ 314 (502)
Q Consensus 273 ~~A~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (502)
++|...++........ .+..+...+...|++++|...+++..
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777766543211 23344455555555555555555543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.1e-10 Score=97.41 Aligned_cols=183 Identities=10% Similarity=-0.007 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC--C----cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 046039 257 IVVTAIIDMYCKCGCPERALQVFNTVPKK--G----LSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY--ISFIAV 328 (502)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l 328 (502)
..+..+...+.+.|++++|+..|+++.+. + ...+..++.++...|++++|+..|+++.+..+.... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34444556666667777777777665531 1 124555666666677777777777666654322111 133333
Q ss_pred HHHHhc------------------CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH
Q 046039 329 LTACNH------------------SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDA 390 (502)
Q Consensus 329 ~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 390 (502)
..++.. .|++++|...|+.+.+.+ +-+........... ...... .
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----~~~~~~-----------~ 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----FLKDRL-----------A 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----HHHHHH-----------H
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----HHHHHH-----------H
Confidence 333332 334455555555544321 11111111111000 000000 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES---CGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
.....++..|.+.|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...++.
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 0123567788999999999999999999999986 57999999999999999999999999887654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-10 Score=104.62 Aligned_cols=214 Identities=13% Similarity=-0.008 Sum_probs=126.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 046039 193 ISGYVRNVKFKEALELFREMQEQ----NIKPS-EFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYC 267 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (502)
+..|...|++++|...|++..+. |-+++ ..+|..+..++...|++++|...+++.++.. .
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~ 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------T 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------H
Confidence 44555566666666666555432 11111 2344555555555555555555555444321 1
Q ss_pred hcCChHHHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHhcCCCHHHH
Q 046039 268 KCGCPERALQVFNTVPKKGLSCWNSMVFGLAMN-GYENEAIKLFSGLQSSNLKP-D----YISFIAVLTACNHSGKVNQA 341 (502)
Q Consensus 268 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~~~~~~a 341 (502)
..|+...+ ..++..+...|... |++++|+..|++..+..... + ..++..+...+...|++++|
T Consensus 109 ~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 109 HRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 11111111 12456677777775 88888888777776531110 1 34577788888889999999
Q ss_pred HHHHHHhhhhcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH------HHHHHHHHHHH--hcCCHH
Q 046039 342 KDYFTLMTETYKIKPSI-----KHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDA------IIWGSLLSACR--KHGNIE 407 (502)
Q Consensus 342 ~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~~l~~~~~--~~~~~~ 407 (502)
+..|++......-.+.. ..+..+..++...|++++|...|++... .|+. ..+..++.++. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998887642211221 1466777888889999999999988765 2331 13444566664 456789
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 408 MAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 408 ~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
+|+..|+++..++|....++..+-.
T Consensus 258 ~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp HHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHhccCCccHHHHHHHHHHHHH
Confidence 9999998888888866554444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.8e-11 Score=103.80 Aligned_cols=205 Identities=9% Similarity=-0.053 Sum_probs=149.8
Q ss_pred CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCChHHHHHHHhcCCCCC------cc
Q 046039 218 KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELN---TIVVTAIIDMYCKCGCPERALQVFNTVPKKG------LS 288 (502)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~ 288 (502)
+.+...+..+...+...|++++|...|+.+++... .+ ...+..+..+|.+.|++++|...|+++.+.. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 45677788888899999999999999999998752 23 6678889999999999999999999876532 23
Q ss_pred hHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhH
Q 046039 289 CWNSMVFGLAM--------NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKH 360 (502)
Q Consensus 289 ~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 360 (502)
++..+..++.. .|++++|+..|+++.+..+. +.... .+...+...... ....
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~--------------~a~~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVD--------------DATQKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHH--------------HHHHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHH--------------HHHHHHHHHHHH-----HHHH
Confidence 67778888888 99999999999999985322 11111 111111111111 1122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCcc
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPS-DPD----AIIWGSLLSACRKH----------GNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
+..+...|.+.|++++|+..|+++.. .|+ ...+..++.+|... |++++|+..|+++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 45677888999999999999988754 243 45777888888866 8999999999999999999874
Q ss_pred ---hHHHHHHHHHhcCCchHH
Q 046039 426 ---GYVLMSNLYAASYQFEEA 443 (502)
Q Consensus 426 ---~~~~l~~~~~~~g~~~~A 443 (502)
....+..++.+.|+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 444555555555554443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=8.3e-12 Score=99.51 Aligned_cols=143 Identities=11% Similarity=-0.009 Sum_probs=114.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQSSNLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRA 371 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (502)
|...+...|++++|+..++..... .| +...+..+...|...|++++|++.|++..+. .+-+...|..+..+|.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 344555677888888888887653 23 2345667888899999999999999998874 244678889999999999
Q ss_pred CCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046039 372 GLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQA-AKQIIELDKNESCGYVLMSNLYAASYQ 439 (502)
Q Consensus 372 g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 439 (502)
|++++|...|+++.. .| ++..|..++..|.+.|++++|.+. ++++++++|+++.++...+.++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999988764 35 677899999999999999876665 699999999999999999999888875
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-10 Score=115.37 Aligned_cols=162 Identities=10% Similarity=-0.011 Sum_probs=111.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDM 265 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (502)
..+|+.|..++.+.|++++|++.|++.++.. +-+...+..+..++.+.|++++|...|+++++.. +-+...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4566777777777777777777777776654 4456667777777777777777777777777664 3346667777777
Q ss_pred HHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 046039 266 YCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAK 342 (502)
Q Consensus 266 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 342 (502)
|...|++++|++.|++..+ .+..+|..+..+|...|++++|+..|++..+... -+...+..+..++...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHHH
Confidence 7777777777777776544 2344677777777777777777777777776432 24566777777777777777777
Q ss_pred HHHHHhhh
Q 046039 343 DYFTLMTE 350 (502)
Q Consensus 343 ~~~~~~~~ 350 (502)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.23 E-value=7.3e-10 Score=98.53 Aligned_cols=130 Identities=14% Similarity=0.077 Sum_probs=106.2
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC-------
Q 046039 186 TVSWNSMISGYVRNVKFKEALELFREMQEQ------NI-KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNC------- 251 (502)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------- 251 (502)
..++..+...+...|++++|+..++++.+. +- +....++..+..++...|++++|...++++.+..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 457888899999999999999999988754 21 3345678888999999999999999999888651
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC--------C---cchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046039 252 FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK--------G---LSCWNSMVFGLAMNGYENEAIKLFSGLQS 315 (502)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (502)
.+....++..+...|...|++++|...++++.+. + ..++..+...+...|++++|...+++..+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1334677888999999999999999999876543 2 33788899999999999999999998876
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-09 Score=94.82 Aligned_cols=181 Identities=10% Similarity=0.049 Sum_probs=128.5
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-----cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 046039 240 GEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKG-----LSCWNSMVFGLAMNGYENEAIKLFSGLQ 314 (502)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 314 (502)
+...+++..+.+ .++...+..+..++...|++++|++++.+....+ ...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665554 3444445567777777888888888887764332 3466777888888999999999999988
Q ss_pred HCCCCC-----CHHHHHHHHHH--Hhc--CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 315 SSNLKP-----DYISFIAVLTA--CNH--SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 315 ~~~~~p-----~~~~~~~l~~~--~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
+. .| +..+...++.+ ... .+++..|..+|+++... .|+......++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 55 35666666655 222 34899999999998754 3442233344458889999999999998654
Q ss_pred C-----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 046039 386 S-----------DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYV 428 (502)
Q Consensus 386 ~-----------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 428 (502)
. .| ++.++..++......|+ +|.++++++.+..|++|.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 3 14 56677677777777787 899999999999999986544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-10 Score=88.69 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHh
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRK 402 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 402 (502)
+..+...+...|++++|..+++.+... .+.+...+..++..+...|++++|...++++.. ..+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344455555566666666666665543 123445555566666666677776666665542 2345567777777888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 403 HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 403 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
.|++++|.+.++++++..|+++..+..++.++...|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888888888888888888888888776543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-10 Score=99.95 Aligned_cols=174 Identities=9% Similarity=-0.040 Sum_probs=139.1
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC
Q 046039 274 RALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYK 353 (502)
Q Consensus 274 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 353 (502)
.....+......+...+..+...+...|++++|...|++..+... -+...+..+...+...|++++|...++.+...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 344444444444455677788888899999999999999988643 36678888999999999999999999998754
Q ss_pred CCCChhHHH-HHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cchHH
Q 046039 354 IKPSIKHYS-CMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE--SCGYV 428 (502)
Q Consensus 354 ~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~ 428 (502)
.|+..... .....+.+.++.++|...+++... .| +...+..++..+...|++++|+..|+++++.+|++ ...+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 34543322 233346677888888888887754 34 67899999999999999999999999999999998 88999
Q ss_pred HHHHHHHhcCCchHHHHHHHHhh
Q 046039 429 LMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
.++.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999999887754
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-08 Score=93.59 Aligned_cols=203 Identities=12% Similarity=-0.019 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH-HHHhc
Q 046039 203 KEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERAL-QVFNT 281 (502)
Q Consensus 203 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~ 281 (502)
+.+..+|++++... +.+...|...+.-+...|+++.|..++++.... +.+...+. .|....+.++.. .+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHH
Confidence 45677888888763 666777887888788889999999999999887 33433332 222222211111 12211
Q ss_pred CC--C-------C---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHh
Q 046039 282 VP--K-------K---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNH-SGKVNQAKDYFTLM 348 (502)
Q Consensus 282 ~~--~-------~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~ 348 (502)
.. . . ....|...+....+.++.+.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 11 0 0 1135677777777788899999999999 32 22345555433322222 33699999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 349 TETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 349 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
.+.+ +.++..+...++...+.|+.+.|..+|+.+. .....|...+..-...|+.+.+..+++++.+
T Consensus 347 l~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8854 3344556667777788999999999999985 3577888888888889999999999999885
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.4e-11 Score=118.17 Aligned_cols=169 Identities=13% Similarity=0.014 Sum_probs=116.6
Q ss_pred HhcCChHHHHHHHhcCC--------C---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 046039 267 CKCGCPERALQVFNTVP--------K---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHS 335 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 335 (502)
...|++++|++.+++.. + .+...+..+..++...|++++|+..|+++.+.+. .+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 56677777777777665 2 2344677777777777777777777777776532 2556677777777777
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 046039 336 GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAA 413 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 413 (502)
|++++|+..|++..+. .+.+...+..+..+|.+.|++++ ...|+++.. .| +...|..++.++.+.|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7888888777777753 23345666777777777777777 777776653 23 5567777777777788888888888
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCC
Q 046039 414 KQIIELDKNESCGYVLMSNLYAASYQ 439 (502)
Q Consensus 414 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 439 (502)
+++++++|++..++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88777777777777777777766554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.3e-09 Score=89.14 Aligned_cols=161 Identities=11% Similarity=-0.073 Sum_probs=128.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC----CHHHHHHHHHHhhhhcCCCCChhHH
Q 046039 286 GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSG----KVNQAKDYFTLMTETYKIKPSIKHY 361 (502)
Q Consensus 286 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (502)
++.++..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|..+|+..... -++..+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 44566666777777778888888888887765 55667777777777 6 899999999988664 256677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHH
Q 046039 362 SCMVDALGR----AGLLEEAEKLIRSMPSDPD----AIIWGSLLSACRK----HGNIEMAKQAAKQIIELDKNESCGYVL 429 (502)
Q Consensus 362 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~ 429 (502)
..|...|.. .+++++|..+|++.....+ +..+..|...|.. .+++++|+..|+++.+. |.++..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 778888876 7899999999998876543 7888899999988 88999999999999988 677778999
Q ss_pred HHHHHHhc-C-----CchHHHHHHHHhhhcCC
Q 046039 430 MSNLYAAS-Y-----QFEEAMEERLLMKEVKI 455 (502)
Q Consensus 430 l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 455 (502)
|+.+|... | ++++|...+++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99988764 3 89999999999887765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.9e-10 Score=86.62 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA 436 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 436 (502)
..+...+..|.+.|++++|+..|++... .| +...|..++.+|...|++++|+..|+++++++|+++..+..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3455556666666666666666666543 23 455666666666666666666666666666666666666666666666
Q ss_pred cCCchHHHHHHHHhhh
Q 046039 437 SYQFEEAMEERLLMKE 452 (502)
Q Consensus 437 ~g~~~~A~~~~~~~~~ 452 (502)
.|++++|++.+++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666666653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-09 Score=84.21 Aligned_cols=132 Identities=20% Similarity=0.243 Sum_probs=109.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
.|..++..+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++.+... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677888888899999999999888754 236677888888888999999999999998874 244567788888999
Q ss_pred HhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046039 369 GRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
...|++++|...++++.. . .+...+..++..+...|++++|...++++++.+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999988754 2 357788899999999999999999999999988863
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.6e-10 Score=90.85 Aligned_cols=159 Identities=11% Similarity=-0.002 Sum_probs=109.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH-H
Q 046039 290 WNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDA-L 368 (502)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 368 (502)
+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+... .|+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 3444555666666666666666665532 124566667777777777777777777777653 2233322222211 1
Q ss_pred HhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCCchHHH
Q 046039 369 GRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE--SCGYVLMSNLYAASYQFEEAM 444 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 444 (502)
...+...+|...+++... .| +...+..++.++...|++++|...|+++++.+|+. +..+..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222233346666766543 35 57889999999999999999999999999999875 558999999999999999999
Q ss_pred HHHHHhhh
Q 046039 445 EERLLMKE 452 (502)
Q Consensus 445 ~~~~~~~~ 452 (502)
..+++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.1e-10 Score=89.86 Aligned_cols=102 Identities=16% Similarity=0.018 Sum_probs=90.5
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 046039 354 IKPS-IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 354 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 430 (502)
+.|+ ...+..+...+.+.|++++|...|+++.. .| ++..|..++.+|...|++++|+..|+++++++|+++..+..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3443 56777888889999999999999998864 35 688999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 431 SNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 431 ~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
+.+|...|++++|+..|+++.+...
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999987653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.7e-10 Score=108.88 Aligned_cols=160 Identities=11% Similarity=0.030 Sum_probs=124.7
Q ss_pred cCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 046039 269 CGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYF 345 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 345 (502)
.|++++|...|++..+. +...|..+...+...|++++|...+++..+... .+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999988764 345888999999999999999999999998643 36788889999999999999999999
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 046039 346 TLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKH---GNIEMAKQAAKQIIELD 420 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~ 420 (502)
++..+. .+.+...+..+..+|.+.|++++|.+.|+++.. .| +...+..++.++... |++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999874 244578888999999999999999999988764 34 577889999999999 99999999999999999
Q ss_pred CCCcchHHHHH
Q 046039 421 KNESCGYVLMS 431 (502)
Q Consensus 421 p~~~~~~~~l~ 431 (502)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99998887776
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-09 Score=92.18 Aligned_cols=183 Identities=9% Similarity=-0.061 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 046039 222 FTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNG 301 (502)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 301 (502)
..+......+...|++++|...|+++++..+ .+...+.. ........ ........+..+|...|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~-----~~~~~~~~----------~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYW-----TNVDKNSE----------ISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHH-----HHSCTTSH----------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHH-----hhhcchhh----------hhHHHHHHHHHHHHHCC
Confidence 3344455566778888888888888877531 12222211 01111000 01223445888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC--HHHHHH
Q 046039 302 YENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL--LEEAEK 379 (502)
Q Consensus 302 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~ 379 (502)
++++|+..|++..+..+ -+...+..+..++...|++++|...|+++.+. -+.+...+..+..+|...|+ .+.+..
T Consensus 69 ~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 69 NYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999988643 36788889999999999999999999999874 24457788888888766654 455667
Q ss_pred HHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046039 380 LIRSMPSD-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 380 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
.++.+... |....+...+.++...|++++|+..|++++++.|++
T Consensus 146 ~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 146 DYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 77776532 233355667778888999999999999999999974
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-09 Score=97.69 Aligned_cols=219 Identities=11% Similarity=-0.005 Sum_probs=142.0
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 046039 199 NVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK-LGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQ 277 (502)
Q Consensus 199 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 277 (502)
.|++++|.+++++..+.. +.. +.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456667777776665431 110 111 35556555555443 334555666666666
Q ss_pred HHhcCCCC-----C----cchHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhcCCCHHHHHH
Q 046039 278 VFNTVPKK-----G----LSCWNSMVFGLAMNGYENEAIKLFSGLQSSN---LKPD--YISFIAVLTACNHSGKVNQAKD 343 (502)
Q Consensus 278 ~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~ 343 (502)
.|.+..+. + ..+|+.+...|...|++++|+..|++..+.. -.|. ..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 66544321 1 2256667777778888888888877765421 1121 3567778888888 99999999
Q ss_pred HHHHhhhhcCCC---C-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 046039 344 YFTLMTETYKIK---P-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS----DPD----AIIWGSLLSACRKHGNIEMAKQ 411 (502)
Q Consensus 344 ~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~A~~ 411 (502)
.|++......-. + ...++..+...|.+.|++++|+..|++... .++ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999877532111 1 145778889999999999999999988754 122 2366777788888999999999
Q ss_pred HHHHHHhcCCCCcch-----HHHHHHHHHhcCCchHHHHH
Q 046039 412 AAKQIIELDKNESCG-----YVLMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 412 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 446 (502)
.|++++ ..|..... ...++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 88876532 44455544 56776666553
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-09 Score=95.72 Aligned_cols=156 Identities=9% Similarity=-0.041 Sum_probs=126.8
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHH-HH
Q 046039 319 KPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PDAIIWG-SL 396 (502)
Q Consensus 319 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~-~l 396 (502)
+.+...+..+...+...|++++|...|+++.+. .+.+...+..+..++.+.|++++|...++++... |+..... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 334566777888889999999999999999874 3446778889999999999999999999999763 7655333 33
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeC
Q 046039 397 LSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAG 476 (502)
Q Consensus 397 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (502)
...+...++.+.|+..++++++.+|+++..+..++.+|...|++++|+..++++.+..+..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~------------------- 252 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA------------------- 252 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG-------------------
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-------------------
Confidence 3446778888999999999999999999999999999999999999999999998654321
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhc
Q 046039 477 GRLHPKAPEVYLLLNDLGLLIQEM 500 (502)
Q Consensus 477 ~~~~p~~~~~~~~l~~~~~~~~~~ 500 (502)
++......+..++..+++.
T Consensus 253 -----~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 253 -----ADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp -----GGGHHHHHHHHHHHHHCTT
T ss_pred -----ccchHHHHHHHHHHHcCCC
Confidence 2266777788887777654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.3e-10 Score=88.21 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=82.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
+...+..+...+.+.|++++|...|+++.. .| +...|..++.+|...|++++|+..|+++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 455667778888889999999998887753 34 6778888899999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHhhhcC
Q 046039 435 AASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 435 ~~~g~~~~A~~~~~~~~~~~ 454 (502)
...|++++|+..+++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999988887654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-07 Score=84.18 Aligned_cols=228 Identities=7% Similarity=0.002 Sum_probs=160.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--chHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc---C
Q 046039 200 VKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG--AIRQGEWIHNFLVTNCFELNTIVVTAIIDMY----CKC---G 270 (502)
Q Consensus 200 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g 270 (502)
...++|+..++.++..+ +-+...++.-..++...| ++++++..++.++... +-+..+++.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 33467888888888765 555666676666777777 8888888888888765 33444444433333 344 6
Q ss_pred ChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC------HH
Q 046039 271 CPERALQVFNTVPKKG---LSCWNSMVFGLAMNGYEN--EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK------VN 339 (502)
Q Consensus 271 ~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------~~ 339 (502)
++++++.+++++.+.+ ..+|+.-.-.+...|.++ ++++.++++.+.++. |...|..-.......+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 7788888888776543 446666666777777777 888888888887544 66777766666666665 78
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046039 340 QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEE-AEKLIRSMPS-----DPDAIIWGSLLSACRKHGNIEMAKQAA 413 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~ 413 (502)
++++.++.+... .+-|...|+.+...+.+.|+..+ +..+..++.. ..+...+..++..|.+.|+.++|++++
T Consensus 204 eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 888888888763 34567777777777777777444 4456666543 236778888888888888999999999
Q ss_pred HHHHh-cCCCCcchHHHHHH
Q 046039 414 KQIIE-LDKNESCGYVLMSN 432 (502)
Q Consensus 414 ~~~~~-~~p~~~~~~~~l~~ 432 (502)
+.+.+ .+|.....|...+.
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHh
Confidence 99886 78888777776654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-09 Score=82.12 Aligned_cols=110 Identities=10% Similarity=-0.067 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSAC 400 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~ 400 (502)
..+......+.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|+..|++... . .+...|..++.++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45667788888999999999999998864 345678888899999999999999999988764 3 4678999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 401 RKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
...|++++|++.|+++++++|+++.++..|+.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999998888653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.02 E-value=5.1e-09 Score=89.73 Aligned_cols=185 Identities=15% Similarity=-0.016 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc---c---hHH
Q 046039 220 SEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFEL--NTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL---S---CWN 291 (502)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~---~~~ 291 (502)
+...+..+...+...|++++|...|+.+.+..... ....+..++.+|.+.|++++|+..|+++.+.++ . ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556667788899999999999999999865322 245778889999999999999999998765322 1 455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhc
Q 046039 292 SMVFGLAM------------------NGYENEAIKLFSGLQSSNLKPDY-ISFIAVLTACNHSGKVNQAKDYFTLMTETY 352 (502)
Q Consensus 292 ~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 352 (502)
.+..++.. .|++++|+..|+++.+.. |+. ........ ...+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~----------l~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKR----------LVFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHH----------HHHHHHHH----
Confidence 56666554 578999999999999863 332 22211110 00111111
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 353 KIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
......+...|.+.|++++|...|+++... |+ ...+..++.++.+.|++++|.+.++++....|++..
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 111234677889999999999999987653 43 246888999999999999999999999998888764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=7.5e-09 Score=87.79 Aligned_cols=129 Identities=12% Similarity=-0.036 Sum_probs=96.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...++..... .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 34556677778888888888887763 457777888888888888888888888887764 244566777788888
Q ss_pred HhcCCHHHHHHHHHhCCCC-C-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046039 369 GRAGLLEEAEKLIRSMPSD-P-----------------DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~-~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
...|++++|...|+++... | ....+..++.++...|++++|.+.|+++++..|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888888766431 1 22567778888888888888888888888888876
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.02 E-value=6.8e-08 Score=86.41 Aligned_cols=160 Identities=9% Similarity=-0.046 Sum_probs=122.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHH
Q 046039 293 MVFGLAMNGYENEAIKLFSGLQSSNL-KPDYI----SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS----IKHYSC 363 (502)
Q Consensus 293 l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 363 (502)
.+..+...|++++|..++++...... .|+.. .+..+...+...|++++|+..++.+.....-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888999999999988877432 22221 2334666677888999999999998863222222 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-------C-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPS-------D-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE------SCGYV 428 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~-------~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 428 (502)
++.+|...|++++|...|+++.. . + ...++..++..|...|++++|+..+++++++.+.. +.++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999888752 2 2 23478899999999999999999999999855332 56899
Q ss_pred HHHHHHHhcCC-chHHHHHHHHhhh
Q 046039 429 LMSNLYAASYQ-FEEAMEERLLMKE 452 (502)
Q Consensus 429 ~l~~~~~~~g~-~~~A~~~~~~~~~ 452 (502)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999998888753
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-09 Score=97.86 Aligned_cols=196 Identities=8% Similarity=-0.059 Sum_probs=150.4
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-cCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 046039 233 KLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCK-CGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFS 311 (502)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (502)
..|++++|.+++++..+.... . +.+ .++++.|...|.. .+..|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 457888999999888765321 1 112 5788888888776 3677889999999999998
Q ss_pred HHHHC----CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 046039 312 GLQSS----NLKP-DYISFIAVLTACNHSGKVNQAKDYFTLMTETY---KIKP-SIKHYSCMVDALGRAGLLEEAEKLIR 382 (502)
Q Consensus 312 ~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 382 (502)
+..+. +-.+ -..+|..+..+|...|++++|+..|++..... +.+. ...++..+..+|.. |++++|+..|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 87653 1111 13578888889999999999999999876532 1111 24577788889988 99999999998
Q ss_pred hCCCC----C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHH
Q 046039 383 SMPSD----P----DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES------CGYVLMSNLYAASYQFEEAMEERL 448 (502)
Q Consensus 383 ~~~~~----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 448 (502)
+...- . ...++..++..|...|++++|+..|++++++.|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 87531 1 145788899999999999999999999999766543 367778888889999999999999
Q ss_pred Hhh
Q 046039 449 LMK 451 (502)
Q Consensus 449 ~~~ 451 (502)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 987
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.8e-09 Score=102.94 Aligned_cols=147 Identities=9% Similarity=-0.081 Sum_probs=72.7
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHH
Q 046039 235 GAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFS 311 (502)
Q Consensus 235 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 311 (502)
|++++|...++++.+.. +.+...+..+...|...|++++|...|++..+. +...|..+...|...|++++|...++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566666666655543 234455555666666666666666666655442 23355556666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHhCC
Q 046039 312 GLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRA---GLLEEAEKLIRSMP 385 (502)
Q Consensus 312 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 385 (502)
+..+... .+...+..+..++...|++++|.+.+++..+. .+.+...+..+..++... |+.++|.+.+++..
T Consensus 82 ~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 82 QASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 6655421 23455555666666666666666666665543 123345555556666666 66666666665543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.8e-09 Score=84.72 Aligned_cols=129 Identities=13% Similarity=0.110 Sum_probs=103.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHH-HHh
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-PDAIIWGSLLSA-CRK 402 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~-~~~ 402 (502)
+......+...|++++|...++...+. .+.+...+..+..++.+.|++++|...|+++... |++..+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 445666788899999999999998863 2446788889999999999999999999998753 544443333222 223
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 403 HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 403 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
.++..+|+..++++++.+|+++..+..++.++...|++++|...++++.+..+
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNL 139 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence 23344589999999999999999999999999999999999999999886543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-08 Score=102.96 Aligned_cols=190 Identities=11% Similarity=0.040 Sum_probs=131.3
Q ss_pred hccCchHHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhc
Q 046039 232 AKLGAIRQGEWIHNFLV--------TNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMN 300 (502)
Q Consensus 232 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 300 (502)
...|++++|.+.++++. +.. +.+...+..+..+|...|++++|+..|+++.+. +...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66778888888888777 332 345667777778888888888888888776652 445777788888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 046039 301 GYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKL 380 (502)
Q Consensus 301 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 380 (502)
|++++|+..|++..+.... +...+..+..++...|++++ ++.|+++.+. .+.+...+..+..+|.+.|++++|...
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888875422 45677778888888888888 8888888763 234567778888888888888888888
Q ss_pred HHhCCC-CCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCcch
Q 046039 381 IRSMPS-DPD-AIIWGSLLSACRKHGN-----IEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 381 ~~~~~~-~~~-~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~p~~~~~ 426 (502)
|+++.. .|+ ...+..++.++...++ .+...+..+.+.++.++++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 888875 354 4577777777766555 233333333333444444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-08 Score=86.64 Aligned_cols=127 Identities=9% Similarity=0.048 Sum_probs=55.0
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC-
Q 046039 262 IIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK- 337 (502)
Q Consensus 262 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~- 337 (502)
+..+|.+.|++++|+..|++..+. ++..|..+...+...|++++|+..|++..+..+ .+...+..+..++...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHH
Confidence 444445555555555555444321 233445555555555555555555555555321 134444444444433322
Q ss_pred -HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHH
Q 046039 338 -VNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAII 392 (502)
Q Consensus 338 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 392 (502)
...+...++... ...|....+.....++...|++++|...|+++.. .|+...
T Consensus 139 ~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 192 (208)
T 3urz_A 139 EKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192 (208)
T ss_dssp HHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHH
Confidence 222333333322 1112222223334444455566666666655543 255443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-08 Score=90.71 Aligned_cols=163 Identities=9% Similarity=-0.093 Sum_probs=120.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCC--CCC--hhH
Q 046039 290 WNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDY-----ISFIAVLTACNHSGKVNQAKDYFTLMTETYKI--KPS--IKH 360 (502)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~~ 360 (502)
+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...++.......- .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566677888888888888777765322111 22344556677888999999999887653111 111 447
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Ccc
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPS----DPD-----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN------ESC 425 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~ 425 (502)
++.+...|...|++++|...|+++.. .|+ ..++..++.+|...|++++|+..+++++++.++ ...
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 88899999999999999999887652 122 258889999999999999999999999875432 156
Q ss_pred hHHHHHHHHHhcCCchHH-HHHHHHhhh
Q 046039 426 GYVLMSNLYAASYQFEEA-MEERLLMKE 452 (502)
Q Consensus 426 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 452 (502)
++..++.+|.+.|++++| ...+++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 789999999999999999 777777653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.3e-09 Score=81.54 Aligned_cols=119 Identities=18% Similarity=0.049 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
...+..+...+.+.|++++|...|++... .| +...|..++.++...|++++|+..++++++++|+++..+..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44566777888888999999988887754 24 67788899999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHH
Q 046039 436 ASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLL 496 (502)
Q Consensus 436 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 496 (502)
..|++++|...+++..+..+.. ...|++.++...+..+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~--------------------~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEV--------------------NNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHH--------------------HTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCccc--------------------CCchhHHHHHHHHHHHHHh
Confidence 9999999999998887654211 2346677777777766554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.97 E-value=4e-09 Score=82.98 Aligned_cols=98 Identities=16% Similarity=0.059 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
+...+..+...+.+.|++++|...|+++.. .| +...|..++.++...|++++|+..|+++++++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 345566677888899999999999988754 34 6778889999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHhhhcC
Q 046039 435 AASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 435 ~~~g~~~~A~~~~~~~~~~~ 454 (502)
...|++++|.+.++++.+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999887643
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-08 Score=82.61 Aligned_cols=128 Identities=9% Similarity=-0.006 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSAC 400 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~ 400 (502)
..+..+...+...|+++.|...++..... .+.+...+..+..++...|++++|...+++... .| +...|..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45666677777888888888888888763 234577788888888899999999998887654 23 677889999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCCchHHHHHHHHhhh
Q 046039 401 RKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL--YAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 452 (502)
...|++++|...++++++..|+++..+..+..+ +...|++++|++.+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998888555554 8888999999999887653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-07 Score=84.56 Aligned_cols=213 Identities=11% Similarity=0.102 Sum_probs=168.3
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--ChHHHHHHHhcCCCCC---cchHHHHHHHH----Hhc---CCh
Q 046039 236 AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCG--CPERALQVFNTVPKKG---LSCWNSMVFGL----AMN---GYE 303 (502)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~---~~~~~~l~~~~----~~~---g~~ 303 (502)
..++|......++..+ +-...+++.-..++...| ++++++.+++.+...+ ..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 4468889999998876 335666777777778888 9999999999887644 44676655555 555 789
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHH--HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC------HH
Q 046039 304 NEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVN--QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL------LE 375 (502)
Q Consensus 304 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 375 (502)
++++.+++++.+...+ +...|..-.-++...|.++ +++++++.+.+. -+-|...|+.-..++.+.|+ ++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 9999999999987544 7788877777777788887 999999999875 24456677666666666676 88
Q ss_pred HHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 046039 376 EAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEM-AKQAAKQIIELD---KNESCGYVLMSNLYAASYQFEEAMEERLL 449 (502)
Q Consensus 376 ~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 449 (502)
++++.++++.. .| |...|+.+...+.+.|+... +..+++++++++ |.++.++..++.+|.+.|+.++|+++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 89988877654 34 78899999999988887444 667888887776 88899999999999999999999999999
Q ss_pred hhh
Q 046039 450 MKE 452 (502)
Q Consensus 450 ~~~ 452 (502)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 975
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-08 Score=78.33 Aligned_cols=117 Identities=14% Similarity=0.010 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHH
Q 046039 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLS 398 (502)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~ 398 (502)
+...+..+...+...|++++|...++..... .+.+...+..+..+|...|++++|...++++.. . .+...+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 4456666777777777777777777777652 233566677777777777888888877776653 2 35677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQ 439 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 439 (502)
++...|++++|.+.|+++++.+|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88889999999999999998888888888888888877664
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.3e-08 Score=82.96 Aligned_cols=172 Identities=9% Similarity=-0.034 Sum_probs=100.5
Q ss_pred HHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC----ChhHHHHHH
Q 046039 71 AILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCG----FLSEARLMF 146 (502)
Q Consensus 71 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 146 (502)
|++.|++..+. -+...+..+...+...+++++|...|+...+.| ++..+..+...|.. + ++++|...|
T Consensus 5 A~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 5 PGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp TTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 44555555443 244455555555556666666666666666554 44555555555555 4 566666666
Q ss_pred hhcCCCCCeeeHHHHHHHHHh----cCCHHHHHHHHHccCCCC-----hhhHHHHHHHHHh----CCChHHHHHHHHHHH
Q 046039 147 DEVDTEFDVVAWNSMIIGLAK----CGEIDESRRLFDKMVSRN-----TVSWNSMISGYVR----NVKFKEALELFREMQ 213 (502)
Q Consensus 147 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~m~ 213 (502)
++.....++..+..|...|.. .+++++|+..|++..+.+ +.++..|...|.. .+++++|+.+|++..
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 655444455555555555554 556666666666664432 4566667777766 667777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHhcc-C-----chHHHHHHHHHHHHcCC
Q 046039 214 EQNIKPSEFTMVSLLNACAKL-G-----AIRQGEWIHNFLVTNCF 252 (502)
Q Consensus 214 ~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~~ 252 (502)
+. +.+...+..+...|... | ++++|...|+...+.|.
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 65 22333455555555432 2 67777777777777663
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-08 Score=77.38 Aligned_cols=119 Identities=12% Similarity=-0.003 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHH
Q 046039 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLS 398 (502)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~ 398 (502)
+...+..+...+...|+++.|...++..... .+.+...+..+..++...|++++|...+++... .| +...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 3456667777788888888888888888764 234567778888888899999999998887654 23 5778889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFE 441 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 441 (502)
++...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999888763
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-08 Score=86.70 Aligned_cols=192 Identities=9% Similarity=-0.063 Sum_probs=99.3
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhHHHHH-------HHHHHhcCChHHHHHHHhcCCCCCc------------------
Q 046039 233 KLGAIRQGEWIHNFLVTNCFELNTIVVTAI-------IDMYCKCGCPERALQVFNTVPKKGL------------------ 287 (502)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~------------------ 287 (502)
..++...|.+.|.++.+.. +-....+..+ ...+.+.++..+++..+.......+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777765 3344555544 3444444444444444444333110
Q ss_pred ------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC--hh
Q 046039 288 ------SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS--IK 359 (502)
Q Consensus 288 ------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 359 (502)
..+..+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+..... . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 022334455556666666666666655432 33323334444555566666666666544321 0 110 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPSD---P--DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 430 (502)
.+..+..++.+.|++++|+..|++.... | ....+...+.++.+.|+.++|...|+++.+.+|+ +.....|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 4445555666666666666666655322 2 1224455555666666666666666666666665 4444433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.1e-08 Score=85.04 Aligned_cols=187 Identities=11% Similarity=-0.013 Sum_probs=108.5
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHhccCchHHHHHHHHHHHHcCCCCc---------------
Q 046039 198 RNVKFKEALELFREMQEQNIKPSEFTMVSL-------LNACAKLGAIRQGEWIHNFLVTNCFELN--------------- 255 (502)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 255 (502)
..++...|.+.|.++.... +-....|..+ ...+...++..++...+....+. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 4677777777777777664 4455555555 34444444444444444443331 111
Q ss_pred -------hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHH
Q 046039 256 -------TIVVTAIIDMYCKCGCPERALQVFNTVPKKGL--SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPD--YIS 324 (502)
Q Consensus 256 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~ 324 (502)
....-.+...+...|++++|.++|..+...++ .....+...+.+.+++++|+..|+...... .|. ...
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 11223355566677777777777777765332 244555556777777777777776554421 111 235
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS--IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD 389 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 389 (502)
+..+..++...|++++|+..|++.... ...|. .........++.+.|+.++|...|+++.. .|+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 566666777777777777777777642 22132 33445566667777777777777777653 355
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-08 Score=75.85 Aligned_cols=115 Identities=18% Similarity=0.184 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 046039 322 YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSA 399 (502)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 399 (502)
...+..+...+...|++++|...++++... .+.+...+..+...+.+.|++++|...++++.. ..+...+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 456777777788888888888888888764 234566777888888888999999888887653 2367788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 046039 400 CRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASY 438 (502)
Q Consensus 400 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 438 (502)
+...|++++|...++++++..|+++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999988888876654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.8e-09 Score=85.61 Aligned_cols=117 Identities=9% Similarity=0.059 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHH-HHhcCCH--HHH
Q 046039 335 SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--PDAIIWGSLLSA-CRKHGNI--EMA 409 (502)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~-~~~~~~~--~~A 409 (502)
.|++++|...++..... .+.+...+..+..+|...|++++|...|+++... .+...+..++.+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34555555555554442 1233445555555555555555555555554321 244455555555 4555555 666
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 410 KQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 410 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
...++++++.+|+++..+..++.+|...|++++|...++++.+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666555543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-08 Score=77.78 Aligned_cols=99 Identities=15% Similarity=0.110 Sum_probs=89.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 355 KPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 355 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
+.+...+..+...+.+.|++++|...|+++... | +...+..++.++...|++++|+..++++++..|+++.++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888999999999999999999987643 4 67889999999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHhhhc
Q 046039 433 LYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 433 ~~~~~g~~~~A~~~~~~~~~~ 453 (502)
++.+.|++++|...+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.87 E-value=3.2e-09 Score=94.29 Aligned_cols=187 Identities=6% Similarity=-0.106 Sum_probs=101.2
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 046039 260 TAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSG 336 (502)
Q Consensus 260 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 336 (502)
..+...+...|++++|...|++..+ .+...|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3333444444444444444443322 123344445555555555555555555555542 224556666666677777
Q ss_pred CHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 046039 337 KVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQ 415 (502)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 415 (502)
++++|...|+...+.. |+ ...+...+....+..+...... .......++......+... ..|++++|++.+++
T Consensus 87 ~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~ 160 (281)
T 2c2l_A 87 SYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERELEECQR 160 (281)
T ss_dssp CHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSG
T ss_pred CHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 7777777776665431 11 0011111111111111111111 1222222333333333332 26899999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHhc-CCchHHHHHHHHhhhc
Q 046039 416 IIELDKNESCGYVLMSNLYAAS-YQFEEAMEERLLMKEV 453 (502)
Q Consensus 416 ~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 453 (502)
+++.+|++......+...+.+. +++++|.++|.++.+.
T Consensus 161 al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 161 NHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp GGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999888888887777776 7789999999988653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.87 E-value=7.5e-08 Score=81.52 Aligned_cols=89 Identities=12% Similarity=-0.049 Sum_probs=44.9
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHH
Q 046039 261 AIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQ 340 (502)
Q Consensus 261 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 340 (502)
.+...+...|++++|...|++...++...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 344444555555555555555544444455555555555555555555555554432 1234444455555555555555
Q ss_pred HHHHHHHhhh
Q 046039 341 AKDYFTLMTE 350 (502)
Q Consensus 341 a~~~~~~~~~ 350 (502)
|...|+...+
T Consensus 90 A~~~~~~al~ 99 (213)
T 1hh8_A 90 AIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-08 Score=81.30 Aligned_cols=109 Identities=18% Similarity=0.091 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHH
Q 046039 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLS 398 (502)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~ 398 (502)
+...+..+...+...|++++|+..|++..+. .+.+...+..+..+|.+.|++++|+..|+++.. .| +...|..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4556777777888888888888888888764 234567777888888888888888888877654 23 5677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
+|...|++++|+..|+++++++|+++..+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 888888888888888888888888887655554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-08 Score=74.88 Aligned_cols=100 Identities=13% Similarity=-0.035 Sum_probs=87.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN--ESCGYVLMSN 432 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 432 (502)
+...+..+...+...|++++|...|+++.. ..+...|..++.++...|++++|...++++++..|+ ++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 455667788888899999999999887753 236778889999999999999999999999999999 9999999999
Q ss_pred HHHhc-CCchHHHHHHHHhhhcCCc
Q 046039 433 LYAAS-YQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 433 ~~~~~-g~~~~A~~~~~~~~~~~~~ 456 (502)
++... |++++|.+.++.+......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999999877654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.84 E-value=2.4e-07 Score=88.84 Aligned_cols=357 Identities=11% Similarity=-0.001 Sum_probs=199.9
Q ss_pred cCC-ChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC-hhH
Q 046039 64 QSS-TPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGF-LSE 141 (502)
Q Consensus 64 ~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 141 (502)
+.| ++..|..+|+.+... -|. |+++.+..+|++.+.. .|+...|...+....+.++ .+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~---~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL---YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp ------CCHHHHHHHHHHH---HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----C
T ss_pred HcCcchHHHHHHHHHHHHH---CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHH
Confidence 345 377777787777754 233 8999999999999884 4688899888887777663 344
Q ss_pred HHHHHhhcCC-----CCCeeeHHHHHHHHH----hcCCHHHHHHHHHccCCCChhhHHHHHHHHHh---C----------
Q 046039 142 ARLMFDEVDT-----EFDVVAWNSMIIGLA----KCGEIDESRRLFDKMVSRNTVSWNSMISGYVR---N---------- 199 (502)
Q Consensus 142 a~~~~~~~~~-----~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---~---------- 199 (502)
...+|+.... ..+...|...+..+. ..++.+.+.++|++.+.-....+..+-..|.. .
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 5556655332 345567777776544 34677888899988855211112222222211 1
Q ss_pred ----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--C--c---hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 046039 200 ----VKFKEALELFREMQEQNIKPSEFTMVSLLNACAKL--G--A---IRQGEWIHNFLVTNCFELNTIVVTAIIDMYCK 268 (502)
Q Consensus 200 ----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~--~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (502)
+.+..|...++.+...--..+...|...+.--... | + .+.+..+|++++... +.++.++...+..+.+
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIG 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 12223344444433210011233444433332221 1 1 244567788877754 4557777777777788
Q ss_pred cCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHhcCC
Q 046039 269 CGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSN---------LKP---DYISFIAVLTACNHSG 336 (502)
Q Consensus 269 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~p---~~~~~~~l~~~~~~~~ 336 (502)
.|+.+.|..+|++.... +.....- -.|....+.++. ++.+.+.- ..+ ....|...+....+.+
T Consensus 226 ~~~~~~ar~i~erAi~~-P~~~~l~-~~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~ 300 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEM-SDGMFLS-LYYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR 300 (493)
T ss_dssp TTCHHHHHHHHHHHHHH-CCSSHHH-HHHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhC-CCcHHHH-HHHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC
Confidence 88888888888765544 3321111 122222222222 22222110 001 1234555555555667
Q ss_pred CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 046039 337 KVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR-AGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAA 413 (502)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~ 413 (502)
+.+.|..+|+.+ .. . +.+...|...+..-.. .++.+.|..+|+..... | ++..|...+......|+.+.|..+|
T Consensus 301 ~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 301 GLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp CHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 788888888887 32 1 2233444332322222 33688888888776532 3 3445666777777888888888888
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 414 KQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 414 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
+++ +....++......-...|+.+.+.+++++..+
T Consensus 378 er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 378 KRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 887 33456677776656667888888887776653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2e-08 Score=91.57 Aligned_cols=94 Identities=9% Similarity=-0.054 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
...|..+..+|.+.|++++|+..|+++.. .| +...|..++.+|...|++++|+..|+++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 46778888999999999999999988764 24 67889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHH-HHHHHhh
Q 046039 436 ASYQFEEAM-EERLLMK 451 (502)
Q Consensus 436 ~~g~~~~A~-~~~~~~~ 451 (502)
+.|++++|. ..++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 999999994 4555554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=3.4e-08 Score=75.99 Aligned_cols=118 Identities=18% Similarity=0.100 Sum_probs=102.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
+...+..+...+...|++++|...|+++.. . .+...+..++.++...|++++|...++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 456777888999999999999999998754 2 36788999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHhc
Q 046039 435 AASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQEM 500 (502)
Q Consensus 435 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 500 (502)
...|++++|...+++..+. .|++......++.++..+++.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~--------------------------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL--------------------------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHHHHHhcC
Confidence 9999999999999998754 345567777888887777654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-08 Score=77.28 Aligned_cols=96 Identities=13% Similarity=-0.014 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS 437 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 437 (502)
.+..+...+.+.|++++|...|+++.. .| +...|..++.++...|++++|+..|+++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 345677888899999999999998864 35 7789999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhhhcCC
Q 046039 438 YQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 438 g~~~~A~~~~~~~~~~~~ 455 (502)
|++++|+..+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999886543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-08 Score=81.14 Aligned_cols=109 Identities=12% Similarity=-0.018 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHH
Q 046039 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLS 398 (502)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~ 398 (502)
+...+..+...+...|++++|+..|+.+... .+.+...+..+..+|...|++++|...|+++.. .| ++..+..++.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 3456677778888999999999999998864 345677888899999999999999999988764 34 5678899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
+|...|++++|+..|++++++.|+++.......
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence 999999999999999999999999887654443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.80 E-value=6.7e-08 Score=73.62 Aligned_cols=96 Identities=23% Similarity=0.280 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
...+..+...+...|++++|...++++.. . .+...+..++..+...|++++|...++++++..|+++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56778888999999999999999988764 2 467789999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHhhhc
Q 046039 436 ASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 436 ~~g~~~~A~~~~~~~~~~ 453 (502)
..|++++|..+++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.7e-06 Score=74.19 Aligned_cols=232 Identities=11% Similarity=0.061 Sum_probs=155.8
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C-Ch
Q 046039 196 YVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG-AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKC-G-CP 272 (502)
Q Consensus 196 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 272 (502)
..+.+..++|+++++.++..+ +-+...++.--.++...| .++++..+++.++... +-+..+++.-..++.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 344455677888888888765 555666666666666667 5888888888888765 34566666666566665 6 78
Q ss_pred HHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC----
Q 046039 273 ERALQVFNTVPKKGLS---CWNSMVFGLAMNGYEN--------EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK---- 337 (502)
Q Consensus 273 ~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---- 337 (502)
++++++++++.+.++. +|+...-.+.+.|.++ ++++.++++.+.++. |...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 8888888888776544 5555555555555555 888888988887544 77778777777777765
Q ss_pred ---HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCH--------------------HHHHHHHHhCCCC-------
Q 046039 338 ---VNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLL--------------------EEAEKLIRSMPSD------- 387 (502)
Q Consensus 338 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~------- 387 (502)
++++++.++.+... .+-|...|+.+-..+.+.|+. .+.......+...
T Consensus 221 ~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred hHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 67888888887763 344566777666666666553 3344444444321
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCcchHHHHHH
Q 046039 388 -PDAIIWGSLLSACRKHGNIEMAKQAAKQII-ELDKNESCGYVLMSN 432 (502)
Q Consensus 388 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~ 432 (502)
++...+..++..|...|+.++|.++++.+. +.+|-....|...+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 466677888888888888888888888886 567776666655543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-07 Score=71.55 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS 437 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 437 (502)
.+..++..+...|++++|...|++... .| +...+..++.++...|++++|...++++++..|+++..+..++.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 344444455555555555555554432 12 3445555555555555555555555555555555555555555555555
Q ss_pred CCchHHHHHHHHhh
Q 046039 438 YQFEEAMEERLLMK 451 (502)
Q Consensus 438 g~~~~A~~~~~~~~ 451 (502)
|++++|.+.+++..
T Consensus 86 ~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 86 NRFEEAKRTYEEGL 99 (118)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 55555555555554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-08 Score=79.58 Aligned_cols=101 Identities=10% Similarity=0.012 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHH
Q 046039 322 YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSA 399 (502)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 399 (502)
...+..+...+...|++++|+..|+.+... -+.+...|..+..+|...|++++|...|+++.. .| ++..|..++.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 356777778888999999999999998874 344678888899999999999999999988764 34 56788999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 400 CRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 400 ~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
|...|++++|+..|++++++.|+++
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999865
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.5e-08 Score=76.59 Aligned_cols=94 Identities=10% Similarity=0.043 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-------hHHH
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC-------GYVL 429 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~ 429 (502)
..+..++..+.+.|++++|+..|+++.. .| +...|..++.+|...|++++|++.++++++++|+++. ++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4556677888888888888888877654 34 5677888888888888888888888888888776643 5677
Q ss_pred HHHHHHhcCCchHHHHHHHHhhh
Q 046039 430 MSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 430 l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
++.++...|++++|++.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 78888888888888888887764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.3e-07 Score=81.94 Aligned_cols=162 Identities=14% Similarity=-0.028 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCC---c------chHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--H
Q 046039 257 IVVTAIIDMYCKCGCPERALQVFNTVPKKG---L------SCWNSMVFGLAMNGYENEAIKLFSGLQSSNL---KPD--Y 322 (502)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~p~--~ 322 (502)
..+...+..+...|++++|...+.+..+.. . ..+..+...+...|++++|+..+++...... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344456667778888888888876543211 1 1334456667788899999999988875321 122 4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhh---hcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-------C-C
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTE---TYKIKP--SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-------P-D 389 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~-~ 389 (502)
.++..+...|...|++++|...+++... ..+..+ ...++..++.+|...|++++|...+++...- . -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5788888899999999999999998873 212111 1257888999999999999999999876431 1 2
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 046039 390 AIIWGSLLSACRKHGNIEMA-KQAAKQIIE 418 (502)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~ 418 (502)
..+|..++.+|...|++++| ...+++++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56888999999999999999 888999876
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=5.9e-08 Score=75.58 Aligned_cols=99 Identities=15% Similarity=0.102 Sum_probs=82.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 356 PSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
.+...+..+...+...|++++|...|++... .| +...|..++.++...|++++|...++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 4566777788888888888888888877653 23 567888888899999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHhhhcC
Q 046039 434 YAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 434 ~~~~g~~~~A~~~~~~~~~~~ 454 (502)
|...|++++|+..++++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999888887654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.6e-08 Score=78.33 Aligned_cols=64 Identities=11% Similarity=0.242 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 390 AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
...|..++.+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3567778888888888888888888888888888888888888888888888888888877643
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-07 Score=74.61 Aligned_cols=93 Identities=14% Similarity=0.051 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
..+..+...+...|++++|...|++... .|+ ...|..++.++...|++++|+..++++++..|+++..+..++.+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 3444444444455555555555444432 233 33444555555555555555555555555555555555555555
Q ss_pred HHhcCCchHHHHHHHHhh
Q 046039 434 YAASYQFEEAMEERLLMK 451 (502)
Q Consensus 434 ~~~~g~~~~A~~~~~~~~ 451 (502)
|...|++++|...+++..
T Consensus 109 ~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 555555555555555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=6.9e-08 Score=80.73 Aligned_cols=95 Identities=12% Similarity=-0.115 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA 436 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 436 (502)
..+..+..+|.+.|++++|...++++.. . .+...+..++.+|...|++++|+..|+++++++|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 5677788888899999999998887754 2 4677899999999999999999999999999999999999999999999
Q ss_pred cCCchHHH-HHHHHhhhc
Q 046039 437 SYQFEEAM-EERLLMKEV 453 (502)
Q Consensus 437 ~g~~~~A~-~~~~~~~~~ 453 (502)
.++.+++. ..++.+...
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88888877 455555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-07 Score=70.68 Aligned_cols=111 Identities=13% Similarity=0.004 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHH
Q 046039 322 YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSA 399 (502)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 399 (502)
...+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++... .| +...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 455666777788888888888888888764 234677778888888899999999998887754 24 57788899999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 400 CRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 400 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
+...|++++|.+.++++++.+|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999998888887654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.7e-07 Score=82.46 Aligned_cols=212 Identities=11% Similarity=0.016 Sum_probs=136.7
Q ss_pred HHHHHHHhCCCCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcch---HHHHHHHHhcCCChHHHHHHHHHhHhcCC
Q 046039 7 IHAHLIKTGLAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFI---WNTIIRGFSQSSTPRNAILLFIDMLVTSP 83 (502)
Q Consensus 7 i~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 83 (502)
.+..+.+-...|+..+...+...+ .-. + ..+|..-...+... +...+..+...|++++|...+++..+...
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l-~~~--~---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~ 106 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKL-QIP--I---IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE 106 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHH-TCC--T---HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHh-CcC--H---HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc
Confidence 345555555678888888888877 221 1 12333322222332 33346778889999999999999886522
Q ss_pred CCCCcc----cHHHHHHHHHhcCCchhHHHHHHHHHHhCCC-Cc----hhHHHHHHHHHHhCCChhHHHHHHhhcCCCCC
Q 046039 84 IQPQRL----TYPSLFKAYAQLGLARDGAQLHGRVVKQGLE-FD----QFIHNTIIYMYANCGFLSEARLMFDEVDTEFD 154 (502)
Q Consensus 84 ~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 154 (502)
..|+.. .+..+...+...++++.|+..++.+.+.... ++ ..+++.+..+|...|++++|...|++..
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al---- 182 (293)
T 3u3w_A 107 YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL---- 182 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----
T ss_pred CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----
Confidence 223321 2234555666778899999999998884332 22 2367888888888999988888887643
Q ss_pred eeeHHHHHHHHHhcCCHHHHHHHHHccCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHH
Q 046039 155 VVAWNSMIIGLAKCGEIDESRRLFDKMVSR---NTVSWNSMISGYVRNVKFKEALELFREMQEQ----NIKPS-EFTMVS 226 (502)
Q Consensus 155 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ 226 (502)
+.++..... ...+|..+..+|.+.|++++|+..+++..+. +..+. ..+|..
T Consensus 183 ---------------------~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 183 ---------------------KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp ---------------------HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred ---------------------HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 222322111 1236677788888888888888888876542 22222 567777
Q ss_pred HHHHHhccCc-hHHHHHHHHHHHH
Q 046039 227 LLNACAKLGA-IRQGEWIHNFLVT 249 (502)
Q Consensus 227 ll~~~~~~~~-~~~a~~~~~~~~~ 249 (502)
+..++...|+ +++|...++++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888884 5888888877765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-08 Score=85.29 Aligned_cols=138 Identities=13% Similarity=-0.005 Sum_probs=100.7
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-C----------------HHHHHH
Q 046039 334 HSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-D----------------AIIWGS 395 (502)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~----------------~~~~~~ 395 (502)
..|+++.+.+.|+..... .......+..+...+.+.|++++|...|++.... | + ...|..
T Consensus 16 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp ------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 345555555555433221 1123445666777777888888888888766431 1 1 268889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEe
Q 046039 396 LLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVA 475 (502)
Q Consensus 396 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (502)
++.+|...|++++|+..++++++.+|+++.++..++.+|...|++++|+..+++..+.
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------------------- 151 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL---------------------- 151 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----------------------
Confidence 9999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHh
Q 046039 476 GGRLHPKAPEVYLLLNDLGLLIQE 499 (502)
Q Consensus 476 ~~~~~p~~~~~~~~l~~~~~~~~~ 499 (502)
+|++.++...++.++..+++
T Consensus 152 ----~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 152 ----NPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp ----STTCHHHHHHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHHHHHHHHHH
Confidence 45666777777777766654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.8e-08 Score=73.11 Aligned_cols=112 Identities=13% Similarity=-0.070 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHH
Q 046039 322 YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSA 399 (502)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 399 (502)
...+......+...|++++|+..|++..+. .+.+...+..+..+|.+.|++++|...+++... .| +...|..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 345666777788888999999999888764 244577888888999999999999999888764 34 57789999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHH
Q 046039 400 CRKHGNIEMAKQAAKQIIELD------KNESCGYVLMSNLYA 435 (502)
Q Consensus 400 ~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 435 (502)
+...|++++|+..|+++++++ |+++.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999999 888888887776644
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.1e-08 Score=78.35 Aligned_cols=130 Identities=9% Similarity=0.051 Sum_probs=104.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH-HHhcCCH--
Q 046039 298 AMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDA-LGRAGLL-- 374 (502)
Q Consensus 298 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 374 (502)
...|++++|+..+++..... +.+...+..+..++...|++++|...|+...... +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678889999998888764 3467888899999999999999999999988742 3467778888888 7789998
Q ss_pred HHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 046039 375 EEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 375 ~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 430 (502)
++|...|+++.. .| +...+..++..+...|++++|...|+++++..|+++.....+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 999999988764 34 577889999999999999999999999999999987655443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.1e-08 Score=80.23 Aligned_cols=153 Identities=11% Similarity=0.071 Sum_probs=84.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCC-ChhHHHHHHHHHHhcCCH
Q 046039 299 MNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETY---KIKP-SIKHYSCMVDALGRAGLL 374 (502)
Q Consensus 299 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~ 374 (502)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++..... +..+ ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555565553333322 112234455555566666666666666666554311 1111 234455666666677777
Q ss_pred HHHHHHHHhCCC----CC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCc----chHHHHHHHHHhcCC
Q 046039 375 EEAEKLIRSMPS----DP-D----AIIWGSLLSACRKHGNIEMAKQAAKQIIELDK--NES----CGYVLMSNLYAASYQ 439 (502)
Q Consensus 375 ~~A~~~~~~~~~----~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~ 439 (502)
++|...+++... .+ + ...+..++..+...|++++|...++++++..+ .++ ..+..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 777666655432 12 2 23456677777777777777777777775321 111 234667777777777
Q ss_pred chHHHHHHHHhhh
Q 046039 440 FEEAMEERLLMKE 452 (502)
Q Consensus 440 ~~~A~~~~~~~~~ 452 (502)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=7.6e-08 Score=75.55 Aligned_cols=109 Identities=13% Similarity=0.035 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSAC 400 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~ 400 (502)
..+..+...+...|++++|...|+.+... .+.+...|..+..+|.+.|++++|...|+++.. .| ++..+..++.++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 45566677788899999999999998864 344677888889999999999999999988764 24 567888899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 401 RKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 401 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
...|++++|...|++++++.|+++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999988776655443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-07 Score=75.64 Aligned_cols=99 Identities=16% Similarity=0.036 Sum_probs=79.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
+...+..+...+.+.|++++|+..|++... .| +...|..++.+|...|++++|+..|+++++++|+++..+..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455677777888888888888888887754 24 6678888888888888888888888888888888888888888888
Q ss_pred HhcCCchHHHHHHHHhhhcCC
Q 046039 435 AASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 435 ~~~g~~~~A~~~~~~~~~~~~ 455 (502)
...|++++|+..+++..+...
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHS
T ss_pred HHccCHHHHHHHHHHHHHhCC
Confidence 888888888888887765443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-07 Score=86.71 Aligned_cols=116 Identities=16% Similarity=0.021 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD----------------AIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 420 (502)
...+..+...|.+.|++++|...|+++.. .|+ ...|..++.+|.+.|++++|+..++++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555566666666666666666655532 122 4789999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHh
Q 046039 421 KNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQE 499 (502)
Q Consensus 421 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 499 (502)
|+++.++..++.+|...|++++|+..++++.+. .|++...+..++.++..+++
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------------------------~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------------------------YPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CSSCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------------------------CCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998754 45556677777777666554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.67 E-value=9.9e-08 Score=74.51 Aligned_cols=63 Identities=16% Similarity=0.064 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCcchH----HHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIEL-------DKNESCGY----VLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
..|..++.++.+.|++++|+..+++++++ +|+++..| +..+.++...|++++|+..|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 38999999999999999999999999999 99999999 99999999999999999999998764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.7e-07 Score=70.85 Aligned_cols=113 Identities=12% Similarity=-0.009 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHH
Q 046039 321 DYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS----IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWG 394 (502)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~ 394 (502)
+...+..+...+...|++++|...|+..... .|+ ...+..+..+|...|++++|...+++... .| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 5566777777888888888888888887743 344 56777888888899999999998887653 24 677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA 436 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 436 (502)
.++.++...|++++|...|+++++.+|+++.++..+..+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 999999999999999999999999999999888887766443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-07 Score=73.27 Aligned_cols=89 Identities=12% Similarity=0.065 Sum_probs=51.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHH
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPS-DPD-A---IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE---SCGYVLMSNLYA 435 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~-~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 435 (502)
+...+...|++++|...|+++.. .|+ . ..+..++.++...|++++|+..|+++++..|++ +..+..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 44445555666666655555432 122 1 355555666666666666666666666666665 445666666666
Q ss_pred hcCCchHHHHHHHHhhh
Q 046039 436 ASYQFEEAMEERLLMKE 452 (502)
Q Consensus 436 ~~g~~~~A~~~~~~~~~ 452 (502)
..|++++|...++++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.6e-07 Score=77.44 Aligned_cols=115 Identities=10% Similarity=-0.033 Sum_probs=56.5
Q ss_pred hcCCHHHHHH---HHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHhccCchH
Q 046039 167 KCGEIDESRR---LFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQ----NI-KPSEFTMVSLLNACAKLGAIR 238 (502)
Q Consensus 167 ~~~~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~ 238 (502)
..|++++|.+ .+..-......++..+...+...|++++|...+++..+. +. +.....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333322223445666666666667777766666665541 11 112334555555666666666
Q ss_pred HHHHHHHHHHHc---CC-C--CchhHHHHHHHHHHhcCChHHHHHHHhc
Q 046039 239 QGEWIHNFLVTN---CF-E--LNTIVVTAIIDMYCKCGCPERALQVFNT 281 (502)
Q Consensus 239 ~a~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 281 (502)
+|...+++..+. .. . .....+..+...+...|++++|...+++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 666666655543 10 1 1123344444555555555555554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.7e-08 Score=75.13 Aligned_cols=82 Identities=17% Similarity=0.073 Sum_probs=46.3
Q ss_pred cCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 046039 371 AGLLEEAEKLIRSMPSD----P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 371 ~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 445 (502)
.|++++|+..|+++... | +...|..++.+|...|++++|+..|+++++.+|+++.++..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555555555554432 2 233555566666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhh
Q 046039 446 ERLLMKE 452 (502)
Q Consensus 446 ~~~~~~~ 452 (502)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.1e-07 Score=71.48 Aligned_cols=96 Identities=9% Similarity=0.079 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE-------SCGYV 428 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~ 428 (502)
...+..+...+...|++++|...|+++.. ..+...+..++..+...|++++|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34566778888888999999988887653 2367788889999999999999999999999988776 77899
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 429 LMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
.++.+|...|++++|.+.++++.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998753
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.6e-07 Score=71.79 Aligned_cols=113 Identities=11% Similarity=-0.118 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHH
Q 046039 320 PDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLL 397 (502)
Q Consensus 320 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~ 397 (502)
.+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...++++.. .| +...|..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45677888888888999999999999988874 244577888889999999999999999988764 24 677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-----CcchHHHHHHHH
Q 046039 398 SACRKHGNIEMAKQAAKQIIELDKN-----ESCGYVLMSNLY 434 (502)
Q Consensus 398 ~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~ 434 (502)
.++...|++++|...|++++++.|+ +..+...+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887 555555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.4e-07 Score=86.52 Aligned_cols=96 Identities=10% Similarity=-0.022 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
...|..+..+|.+.|++++|+..++++.. . .+...|..++.+|...|++++|+..|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 46778889999999999999999988764 2 467889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHH-HHHHhhhc
Q 046039 436 ASYQFEEAME-ERLLMKEV 453 (502)
Q Consensus 436 ~~g~~~~A~~-~~~~~~~~ 453 (502)
+.|++++|.+ .++.|..+
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999998875 55666443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-06 Score=70.71 Aligned_cols=127 Identities=17% Similarity=-0.016 Sum_probs=98.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
.|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++..... .+.+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 56667777888888888888888887753 236777888888888999999999999998874 244577888888899
Q ss_pred HhcCCHHHHHHHHHhCCC-CC-CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 046039 369 GRAGLLEEAEKLIRSMPS-DP-DAIIWG--SLLSACRKHGNIEMAKQAAKQIIE 418 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~ 418 (502)
...|++++|...|+++.. .| +...+. ..+..+...|++++|++.+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999988754 23 444553 344447788999999999988765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-07 Score=83.15 Aligned_cols=91 Identities=8% Similarity=-0.097 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYC 267 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (502)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444455555555555555544432 2234444444444444444444444444444332 122333333444444
Q ss_pred hcCChHHHHHHHh
Q 046039 268 KCGCPERALQVFN 280 (502)
Q Consensus 268 ~~g~~~~A~~~~~ 280 (502)
..|++++|...|+
T Consensus 84 ~~g~~~~A~~~~~ 96 (281)
T 2c2l_A 84 EMESYDEAIANLQ 96 (281)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 4444444444333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.4e-07 Score=70.26 Aligned_cols=112 Identities=7% Similarity=-0.051 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----C----HHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P----D----AIIW 393 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~----~~~~ 393 (502)
..+..+...+...|+++.|...++..... .+.+...+..+...|...|++++|...++++... | + ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45566666777777888888877777663 2345666777777788888888888887776531 2 2 6678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS 437 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 437 (502)
..++.++...|++++|.+.|+++++..| ++.....+..+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 8899999999999999999999999988 577777776655443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-05 Score=71.68 Aligned_cols=191 Identities=10% Similarity=0.030 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--ChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCC-hHHHHHHH
Q 046039 237 IRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCG--CPERALQVFNTVPKKG---LSCWNSMVFGLAMNGY-ENEAIKLF 310 (502)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~-~~~a~~~~ 310 (502)
++++..+++.+.... +-+..+++.-..++...| .+++++.+++++.+.+ ..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 445555555555543 334445544444444445 2555665555554432 3345544444555555 35666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcC--------------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhc-----
Q 046039 311 SGLQSSNLKPDYISFIAVLTACNHS--------------GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRA----- 371 (502)
Q Consensus 311 ~~~~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 371 (502)
.++++.++. |...|+.....+... +.++++++.+...... .|-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 666655432 444444333332222 2355566666665542 233444444333333332
Q ss_pred ------CCHHHHHHHHHhCCC-CCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046039 372 ------GLLEEAEKLIRSMPS-DPDAIIWGSLLSA-----CRKHGNIEMAKQAAKQIIELDKNESCGYVLMSN 432 (502)
Q Consensus 372 ------g~~~~A~~~~~~~~~-~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 432 (502)
+.++++++.++++.+ .|+. .|..+..+ ....|..++....+.++++++|.....|..+..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 234455555544432 2332 22211111 112345556666666666666655555555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-07 Score=89.51 Aligned_cols=119 Identities=10% Similarity=-0.001 Sum_probs=97.8
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCH
Q 046039 329 LTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNI 406 (502)
Q Consensus 329 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~ 406 (502)
...+...|++++|.+.+++..+. .+.+...+..+..+|.+.|++++|...++++.. .| +...|..++.+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34466788999999999988874 234578888899999999999999999988754 24 677899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCCchHHHHHHHH
Q 046039 407 EMAKQAAKQIIELDKNESCGYVLMSNL--YAASYQFEEAMEERLL 449 (502)
Q Consensus 407 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 449 (502)
++|++.|+++++++|+++..+..++.+ +.+.|++++|++.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999988 8889999999999884
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.52 E-value=5.3e-07 Score=83.12 Aligned_cols=124 Identities=8% Similarity=-0.026 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC-------------CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 046039 322 YISFIAVLTACNHSGKVNQAKDYFTLMTETYK-------------IKP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS- 386 (502)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 386 (502)
...+..+...+.+.|++++|+..|++..+... ..| +...|..+..+|.+.|++++|+..++++..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45577777788888899999998888775100 111 245566666777777777777777766654
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 046039 387 DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 387 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 445 (502)
.| +...|..++.+|...|++++|+..|+++++++|++..++..++.++...++.+++.+
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23 455666777777777777777777777777777777777777777666666666544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=67.25 Aligned_cols=105 Identities=19% Similarity=0.126 Sum_probs=79.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHH
Q 046039 327 AVLTACNHSGKVNQAKDYFTLMTETYKIKPSI---KHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD----AIIWGSLLS 398 (502)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~ 398 (502)
.+...+...|++++|...|+.+.... +.+. ..+..+..++.+.|++++|...|+++.. .|+ ...+..++.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34556677788888888888877642 2223 4666778888888888888888887653 243 567888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNL 433 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 433 (502)
++...|++++|...|+++++..|+++........+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 99999999999999999999999988766555543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.51 E-value=5.7e-07 Score=85.73 Aligned_cols=95 Identities=15% Similarity=-0.001 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD----------------AIIWGSLLSACRKHGNIEMAKQAAKQIIELDK 421 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 421 (502)
..+..+...|.+.|++++|...|+++.. .|+ ...|..++.+|.+.|++++|+..++++++++|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3444555555566666666666655432 121 56889999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 422 NESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 422 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+++.++..++.+|...|++++|+..|+++.+.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-06 Score=83.37 Aligned_cols=163 Identities=7% Similarity=-0.118 Sum_probs=109.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCC-ChhH
Q 046039 290 WNSMVFGLAMNGYENEAIKLFSGLQSSN-LKPDY----ISFIAVLTACNHSGKVNQAKDYFTLMTETY---KIKP-SIKH 360 (502)
Q Consensus 290 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~ 360 (502)
+..++..|...|++++|.+.+.++...- ..++. ...+.+...+...|+++.+..+++...... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556677777777777777776665421 11111 122333344456788888888887765321 2222 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----cc
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPS-------DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELD---KNE----SC 425 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~----~~ 425 (502)
+..++..|...|++++|..+++++.. ++ ...++..++..|...|++++|..++++++... +.. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 77888899999999999988876532 12 24578888899999999999999999988743 222 24
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 426 GYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 426 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
++..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567778888889999999887766643
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.1e-07 Score=84.85 Aligned_cols=147 Identities=10% Similarity=-0.059 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
.+..+...+.+.|++++|+..|++.... .|+... +...++..++...+. ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 4555666666777777777777776653 233221 122333333322211 13667788888
Q ss_pred HhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH-hcCCchHHHH
Q 046039 369 GRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA-ASYQFEEAME 445 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~ 445 (502)
.+.|++++|+..++++.. .| +...|..++.+|...|++++|+..|+++++++|+++.++..|..+.. ..+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999888887754 24 67788888889999999999999999999889988888888887733 4566777777
Q ss_pred HHHHhhhcCC
Q 046039 446 ERLLMKEVKI 455 (502)
Q Consensus 446 ~~~~~~~~~~ 455 (502)
.++.|.....
T Consensus 321 ~~~~~l~~~p 330 (338)
T 2if4_A 321 MYKGIFKGKD 330 (338)
T ss_dssp ----------
T ss_pred HHHHhhCCCC
Confidence 8877765544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.1e-07 Score=73.15 Aligned_cols=80 Identities=15% Similarity=0.052 Sum_probs=67.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-chHHHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES-CGYVLMSNL 433 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 433 (502)
+...|..+..+|.+.|++++|+..++++.. .| +...|..++.+|...|++++|...|+++++++|+++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 356788889999999999999999988764 34 677999999999999999999999999999999998 666666655
Q ss_pred HHh
Q 046039 434 YAA 436 (502)
Q Consensus 434 ~~~ 436 (502)
..+
T Consensus 142 ~~~ 144 (162)
T 3rkv_A 142 TER 144 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00024 Score=63.75 Aligned_cols=174 Identities=10% Similarity=-0.011 Sum_probs=99.3
Q ss_pred hcCCChHHHHHHHHHhHhcCCCCCC-cccHHHHHHHHHhcC-CchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhC-C-C
Q 046039 63 SQSSTPRNAILLFIDMLVTSPIQPQ-RLTYPSLFKAYAQLG-LARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANC-G-F 138 (502)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 138 (502)
...+..++|+++++.+... .|+ ..+|+.--.++...| .+++++..++.++...+ -+..+|+.-..++... + +
T Consensus 65 ~~~e~se~AL~lt~~~L~~---nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM---NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSC
T ss_pred HhCCCCHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCC
Confidence 3444556777877777754 343 335565555555666 47777777777777643 3666676666666555 5 5
Q ss_pred hhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChH--------HHHHHHH
Q 046039 139 LSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFK--------EALELFR 210 (502)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~ 210 (502)
+++++++++++.. .++ .|..+|+.-..++.+.|.++ ++++.++
T Consensus 141 ~~~EL~~~~k~L~-~dp----------------------------kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 141 PVSEIEYIHGSLL-PDP----------------------------KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp CHHHHHHHHHHTS-SCT----------------------------TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-hCC----------------------------CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 6666666665552 111 12223333222333333333 6777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCc-------hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 046039 211 EMQEQNIKPSEFTMVSLLNACAKLGA-------IRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGC 271 (502)
Q Consensus 211 ~m~~~~~~~~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 271 (502)
++.+.. +-|...|+.....+.+.+. ++++.+.+..++... +-|...++.+-..+.+.|+
T Consensus 192 k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 192 EMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 776664 4466666666666665554 466666666666654 4456666655555555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=6.8e-07 Score=67.71 Aligned_cols=98 Identities=9% Similarity=-0.014 Sum_probs=73.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHh
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRK 402 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~ 402 (502)
+..+...+...|++++|...++...+. .+.+...+..+..++...|++++|+..|+++.. .| +...+..++.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344556677888888888888888763 244677778888888888999999988887754 34 56788889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc
Q 046039 403 HGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 403 ~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
.|++++|+..++++++.+|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999888764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.3e-07 Score=71.70 Aligned_cols=129 Identities=17% Similarity=-0.001 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----CHH
Q 046039 324 SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS----IKHYSCMVDALGRAGLLEEAEKLIRSMPS----DP----DAI 391 (502)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~ 391 (502)
++..+...+...|++++|...+++......-.++ ...+..+...+...|++++|...+++... .+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555555666666666666655432110111 13556666777777777777777766542 11 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDK------NESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
.+..++..+...|++++|.+.++++++..+ .....+..++.++...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677788888888999999999888886432 1245678888889999999999998887764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.9e-07 Score=67.48 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----C----HHHHH
Q 046039 324 SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P----D----AIIWG 394 (502)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~----~~~~~ 394 (502)
.+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..+++...- | + ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3444555566666666666666665542 1233555666666666666666666666555320 1 1 23677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
.++.++...|++++|++.|+++++..|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 7888888999999999999999887775
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1e-06 Score=81.31 Aligned_cols=120 Identities=12% Similarity=-0.033 Sum_probs=70.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSS---------------NLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYK 353 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 353 (502)
.+..+...+.+.|++++|+..|++..+. .-+.+...+..+..++.+.|++++|+..++++.+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 4555666666677777777777666541 00112345666666666677777777777666642
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHH
Q 046039 354 IKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAK 410 (502)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~ 410 (502)
.+.+...+..+..+|...|++++|...|+++.. .| +...+..+..++...++.+++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 233455666666667777777777776666543 23 4455555666666555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.45 E-value=7.3e-07 Score=66.20 Aligned_cols=100 Identities=15% Similarity=0.046 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C---CHHHHHHHHH
Q 046039 323 ISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P---DAIIWGSLLS 398 (502)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~l~~ 398 (502)
..+..+...+...|++++|...++...+. .+.+...+..+..++...|++++|...+++.... | +...+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 44555666677778888888888777663 2345666777788888888888888888776532 3 4678888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCCc
Q 046039 399 ACRKH-GNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 399 ~~~~~-~~~~~A~~~~~~~~~~~p~~~ 424 (502)
++... |++++|.+.++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88889 999999999999988888765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-07 Score=70.86 Aligned_cols=94 Identities=16% Similarity=0.065 Sum_probs=78.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE------SCGYV 428 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 428 (502)
+...+..+...+.+.|++++|...|++... .| +...|..++.++...|++++|++.++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 455677788888899999999999887754 24 67789999999999999999999999999999998 77888
Q ss_pred HHHHHHHhcCCchHHHHHHHHh
Q 046039 429 LMSNLYAASYQFEEAMEERLLM 450 (502)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~~ 450 (502)
.++.++...|++++|...++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 8999998888888877655443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.4e-07 Score=69.82 Aligned_cols=96 Identities=15% Similarity=0.075 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHhhhhcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHH
Q 046039 335 SGKVNQAKDYFTLMTETYK--IKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAK 410 (502)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~ 410 (502)
.|++++|+..|++..+. + -+.+...+..+..+|...|++++|...|+++.. .| +...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46778888888887753 1 133466778888889999999999999988764 24 5778888999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHH
Q 046039 411 QAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~l~ 431 (502)
..++++++..|+++.......
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHHhCCCcHHHHHHHH
Confidence 999999999999886654333
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.8e-06 Score=62.97 Aligned_cols=66 Identities=12% Similarity=-0.001 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+...|..++..+...|++++|+..|+++++.+|+++.++..++.+|...|++++|++.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999999999999999999999999999999988643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.7e-05 Score=68.63 Aligned_cols=179 Identities=10% Similarity=0.089 Sum_probs=130.3
Q ss_pred hHHHHHHHhcCCCC---CcchHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC-HHHHHHHH
Q 046039 272 PERALQVFNTVPKK---GLSCWNSMVFGLAMNG--YENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK-VNQAKDYF 345 (502)
Q Consensus 272 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~ 345 (502)
+++++.+++.+... +..+|+.-.-.+...| .+++++.++.++.+...+ |...|+.-.-++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 46677777766553 4557777777777777 489999999999997654 77788777777777787 68999999
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHhc--------------CCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhc------
Q 046039 346 TLMTETYKIKPSIKHYSCMVDALGRA--------------GLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKH------ 403 (502)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~------ 403 (502)
+.+... .+-|...|+....++.+. +.++++++.+.+... .| |...|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999874 345666777666665554 457888888877653 34 677887666555554
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH---hcCCchHHHHHHHHhhhc
Q 046039 404 -----GNIEMAKQAAKQIIELDKNESCGYVLMSNLYA---ASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 404 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~ 453 (502)
+..+++++.++++++..|++...+..++.... ..|..++....+.++.+-
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 45899999999999999999766555543222 357777888888888754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.5e-05 Score=77.66 Aligned_cols=168 Identities=10% Similarity=0.029 Sum_probs=131.3
Q ss_pred hHHHHHHHhcCCCCC---cchHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC--
Q 046039 272 PERALQVFNTVPKKG---LSCWNSMVFGLAMNGY----------ENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSG-- 336 (502)
Q Consensus 272 ~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-- 336 (502)
.++|++.++++...+ ..+|+.-..++...|+ ++++++.++++.+.+.+ +..+|..-.-++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 345677776665533 3366666666666665 88999999999887544 6777877777778888
Q ss_pred CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhc----------
Q 046039 337 KVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAG-LLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKH---------- 403 (502)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~---------- 403 (502)
+++++++.++.+.+. -+-+...|+.-..++.+.| .++++.+.++++... | +...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 779999999999874 2456777777777777888 899999999888764 4 778888888777663
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 046039 404 ----GNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEE 442 (502)
Q Consensus 404 ----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 442 (502)
+.++++++.+++++..+|++..+|..+..++.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999988655
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-06 Score=62.60 Aligned_cols=65 Identities=22% Similarity=0.220 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+...|..++.+|...|++++|+..|+++++.+|+++.++..++.+|...|++++|++.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788899999999999999999999999999999999999999999999999999999888754
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.9e-06 Score=81.93 Aligned_cols=126 Identities=12% Similarity=0.041 Sum_probs=100.9
Q ss_pred HHhcCCCHHHHHHHHHHhhhhc--CC---CC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCCH-HHHH
Q 046039 331 ACNHSGKVNQAKDYFTLMTETY--KI---KP-SIKHYSCMVDALGRAGLLEEAEKLIRSMPS---------DPDA-IIWG 394 (502)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~--~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~-~~~~ 394 (502)
.+...|++++|+.++++..+.. -+ .| ...+++.|+.+|...|++++|..++++... .|++ .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557899999999988876532 11 22 256788999999999999999999887643 2543 4789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcch---HHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 395 SLLSACRKHGNIEMAKQAAKQIIE-----LDKNESCG---YVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 395 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
.|+..|...|++++|..+++++++ +.|++|.+ ...+..++..+|++++|+..++.++++..+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999986 57887754 567888899999999999999999876543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.8e-06 Score=67.87 Aligned_cols=132 Identities=14% Similarity=0.044 Sum_probs=85.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC----Chh
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLK-PD----YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP----SIK 359 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~ 359 (502)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++.......-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555566666666665555432100 11 13566667777778888888888777654211111 144
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPS----DP----DAIIWGSLLSACRKHGNIEMAKQAAKQIIELD 420 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 420 (502)
.+..+...+...|++++|...+++... .. ....+..+...+...|++++|.+.+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 566777888888888888888876642 11 23467788899999999999999999988754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.3e-05 Score=75.88 Aligned_cols=193 Identities=10% Similarity=-0.001 Sum_probs=100.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC-Cc
Q 046039 193 ISGYVRNVKFKEALELFREMQEQNIKPS----------------EFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE-LN 255 (502)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 255 (502)
...+.+.|++++|++.|..+++...... ...+..+...|...|++++|.+.+..+.+.... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4566778888888888888877542211 123556666777777777777777666543111 11
Q ss_pred h----hHHHHHHHHHHhcCChHHHHHHHhcCCCC-----C----cchHHHHHHHHHhcCChHHHHHHHHHHHHC--CC--
Q 046039 256 T----IVVTAIIDMYCKCGCPERALQVFNTVPKK-----G----LSCWNSMVFGLAMNGYENEAIKLFSGLQSS--NL-- 318 (502)
Q Consensus 256 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-- 318 (502)
. .+.+.+...+...|+++.|..++...... + ..++..++..|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12222333334456666666665543210 0 124555566666666666666666555432 11
Q ss_pred CCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 319 KPD-YISFIAVLTACNHSGKVNQAKDYFTLMTETY---KIKPS--IKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 319 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
++. ...+..++..|...|++++|..+++...... +.++. ...+..++..+...|++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 111 2345555555666666666666665544321 11111 2233444455555566666665555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.27 E-value=3.6e-06 Score=59.73 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
...+..+...+...|++++|...|++... .| +...+..++.++...|++++|...++++++.+|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45666777788888888888888877653 23 56778888889999999999999999999999999988888888877
Q ss_pred hcC
Q 046039 436 ASY 438 (502)
Q Consensus 436 ~~g 438 (502)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.26 E-value=5.8e-06 Score=58.60 Aligned_cols=65 Identities=26% Similarity=0.331 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+...+..++..+...|++++|+..++++++..|+++..+..++.++...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678889999999999999999999999999999999999999999999999999999998754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.3e-06 Score=76.93 Aligned_cols=153 Identities=12% Similarity=0.011 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 046039 256 TIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHS 335 (502)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 335 (502)
...+..+...+.+.|++++|...|++.....+... .+...|+.+++...+. ...+..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34567788888899999999999998664332211 1222333444433221 13677888899999
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHH-HHhcCCHHHHHHH
Q 046039 336 GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSA-CRKHGNIEMAKQA 412 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~-~~~~~~~~~A~~~ 412 (502)
|++++|+..++..... .+.+...+..+..+|...|++++|...|+++... | +...+..+... ....+..+++...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999874 2446788899999999999999999999998753 5 34455556555 3445678889999
Q ss_pred HHHHHhcCCCCcc
Q 046039 413 AKQIIELDKNESC 425 (502)
Q Consensus 413 ~~~~~~~~p~~~~ 425 (502)
|.++++..|.++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999998887653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.1e-06 Score=81.62 Aligned_cols=116 Identities=14% Similarity=0.085 Sum_probs=93.1
Q ss_pred HHHHhcCCHHHHHHHHHhCCC---------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---chH
Q 046039 366 DALGRAGLLEEAEKLIRSMPS---------DPD-AIIWGSLLSACRKHGNIEMAKQAAKQIIE-----LDKNES---CGY 427 (502)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~---------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~---~~~ 427 (502)
..+...|++++|+.++++... .|+ ..+++.|+.+|...|++++|..+++++++ +.|++| ..+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 345688999999998876532 243 34789999999999999999999999986 456665 468
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHh
Q 046039 428 VLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQE 499 (502)
Q Consensus 428 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 499 (502)
..|+.+|..+|++++|+.++++..+-.. ...+..||...++..+|++.+..+++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILL------------------VTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH------------------HHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999998865321 22346799999999999999877665
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.23 E-value=3.6e-06 Score=65.74 Aligned_cols=73 Identities=16% Similarity=0.096 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 360 HYSCMVDALGRAGLLEEAEKLIRSMPS--------DPD-AIIW----GSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 360 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
.|..+..++.+.|++++|+..+++... .|+ ...| ...+.++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 667777777777777777776665532 454 5578 899999999999999999999999999998877
Q ss_pred HHHHHH
Q 046039 427 YVLMSN 432 (502)
Q Consensus 427 ~~~l~~ 432 (502)
..-+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 665553
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.6e-06 Score=61.92 Aligned_cols=77 Identities=9% Similarity=0.076 Sum_probs=57.5
Q ss_pred HHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 377 AEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 377 A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
|...|+++.. .| +...|..++..|...|++++|+..|+++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445554432 23 56677778888888888888888888888888888888888888888888888888888777654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=7.9e-07 Score=69.26 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=65.5
Q ss_pred hcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046039 370 RAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGN----------IEMAKQAAKQIIELDKNESCGYVLMSNLYAAS 437 (502)
Q Consensus 370 ~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 437 (502)
+.+++++|.+.+++... .| +...|..++.++...++ +++|+..|+++++++|+++.+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 44556666666665543 23 56666666666666655 46999999999999999999999999999887
Q ss_pred C-----------CchHHHHHHHHhhhcCC
Q 046039 438 Y-----------QFEEAMEERLLMKEVKI 455 (502)
Q Consensus 438 g-----------~~~~A~~~~~~~~~~~~ 455 (502)
| ++++|++.|+++.+.++
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 5 89999999999887654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.19 E-value=5.8e-06 Score=79.11 Aligned_cols=91 Identities=24% Similarity=0.203 Sum_probs=82.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 046039 363 CMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQF 440 (502)
Q Consensus 363 ~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 440 (502)
.+...+.+.|++++|.+.|+++.. .| +...|..++.+|.+.|++++|++.++++++++|+++..+..++.+|...|++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 345567789999999999998764 34 5789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhc
Q 046039 441 EEAMEERLLMKEV 453 (502)
Q Consensus 441 ~~A~~~~~~~~~~ 453 (502)
++|++.++++.+.
T Consensus 91 ~eA~~~~~~al~~ 103 (477)
T 1wao_1 91 RAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-05 Score=57.16 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 388 PDAIIWGSLLSACRKHGN---IEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
+++..+..++.++...++ .++|..+++++++.+|+++.....++..+.+.|++++|+..|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 467788888888865555 799999999999999999999999999999999999999999999876653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=2.8e-05 Score=60.26 Aligned_cols=89 Identities=9% Similarity=-0.082 Sum_probs=47.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh---
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRK----HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA--- 436 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 436 (502)
|...|...+.+++|.++|++.....++..+..|...|.. .+++++|.+.|+++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444455555555554444444555555555554 45555555555555543 344555555555555
Q ss_pred -cCCchHHHHHHHHhhhcC
Q 046039 437 -SYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 437 -~g~~~~A~~~~~~~~~~~ 454 (502)
.+++++|.+.+++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 555666666655555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=9.3e-06 Score=76.04 Aligned_cols=117 Identities=19% Similarity=0.215 Sum_probs=92.5
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC---C------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---ch
Q 046039 365 VDALGRAGLLEEAEKLIRSMPS---D------PD-AIIWGSLLSACRKHGNIEMAKQAAKQIIE-----LDKNES---CG 426 (502)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~---~------~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~---~~ 426 (502)
+..+.+.|++++|..++++... + |+ ..+++.++.+|...|++++|+.+++++++ +.|++| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4446678899999998876643 1 22 34788999999999999999999999986 456665 46
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHh
Q 046039 427 YVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQE 499 (502)
Q Consensus 427 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 499 (502)
+..|+.+|..+|++++|+.+++++.+--. ...+..||...+++..|++....++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHhc
Confidence 88899999999999999999998875321 22346799999999999998887764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=7.1e-06 Score=63.89 Aligned_cols=109 Identities=11% Similarity=-0.027 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC----------HHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhc
Q 046039 336 GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL----------LEEAEKLIRSMPS-DP-DAIIWGSLLSACRKH 403 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~ 403 (502)
+.+++|.+.++...+. -+.+...|..+..++.+.++ +++|+..|++... .| ....|..++.+|...
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3556666666666553 23345566656666665554 3477777776653 34 456777778777766
Q ss_pred -----------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 404 -----------GNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 404 -----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
|++++|++.|+++++++|++..+...+-. .++|-++.-.+...
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~-------~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM-------TAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-------HHTHHHHHHHHHHS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH-------HHhCHhccCccccc
Confidence 48999999999999999998755544432 24555555544443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00013 Score=71.18 Aligned_cols=154 Identities=10% Similarity=-0.009 Sum_probs=124.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC----------HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 046039 300 NGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK----------VNQAKDYFTLMTETYKIKPSIKHYSCMVDALG 369 (502)
Q Consensus 300 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 369 (502)
....++|++.++++...++. +...|+.--.++...|+ ++++...++.+.+. .+-+...|+.-..++.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34457889999999986433 45566665555655666 89999999999874 3556778887778888
Q ss_pred hcC--CHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-------
Q 046039 370 RAG--LLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHG-NIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS------- 437 (502)
Q Consensus 370 ~~g--~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 437 (502)
+.| +++++.+.++++.+ . .+...|+.-...+...| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 889 77999999999875 2 47889999898999999 999999999999999999999999999998874
Q ss_pred -------CCchHHHHHHHHhhhcCCc
Q 046039 438 -------YQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 438 -------g~~~~A~~~~~~~~~~~~~ 456 (502)
+++++|+++++++....+.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5578899988888765443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.1e-05 Score=75.48 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=79.5
Q ss_pred hcCCHHHHHHHHHhCCC---------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---chHHHHH
Q 046039 370 RAGLLEEAEKLIRSMPS---------DPD-AIIWGSLLSACRKHGNIEMAKQAAKQIIE-----LDKNES---CGYVLMS 431 (502)
Q Consensus 370 ~~g~~~~A~~~~~~~~~---------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~ 431 (502)
..|++++|..++++... .|+ ..+++.|+.+|...|++++|+.+++++++ +.|++| ..+..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788888888776532 133 34789999999999999999999999986 456665 4688999
Q ss_pred HHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHH
Q 046039 432 NLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLN 491 (502)
Q Consensus 432 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 491 (502)
.+|..+|++++|+.+++++.+-.. ...+..||...+++..|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIME------------------VAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHH------------------HHcCCCChHHHHHHHHHh
Confidence 999999999999999998865321 223466887777766654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.90 E-value=5.5e-05 Score=54.51 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=56.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPS-DP-DAI-IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQF 440 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 440 (502)
....+.+.|++++|...|+++.. .| +.. .|..++.++...|++++|++.|+++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 45667788888888888887654 24 556 77888888888888888888888888888888776532 334
Q ss_pred hHHHHHHHHh
Q 046039 441 EEAMEERLLM 450 (502)
Q Consensus 441 ~~A~~~~~~~ 450 (502)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 4555555444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.90 E-value=3.9e-07 Score=82.84 Aligned_cols=252 Identities=14% Similarity=0.169 Sum_probs=158.4
Q ss_pred CChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHH
Q 046039 35 GDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRV 114 (502)
Q Consensus 35 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 114 (502)
++++.|...-++..+| ..|+.|..+....++..+|++.|-+. -|+..|..++.++.+.|.++.-...+...
T Consensus 39 ~~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 39 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp CCSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred cccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4566666666555443 45667777777777777776655211 25556777777777777777777777666
Q ss_pred HHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCC-----------
Q 046039 115 VKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVS----------- 183 (502)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------- 183 (502)
.+.. .++.+=+.|+-+|++.++..+-++ ....|+......+.+-|...|.++.|.-+|..+..
T Consensus 110 Rk~~--ke~~IDteLi~ayAk~~rL~elEe----fl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L 183 (624)
T 3lvg_A 110 RKKA--RESYVETELIFALAKTNRLAELEE----FINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL 183 (624)
T ss_dssp STTC--CSTTTTHHHHHHHHTSCSSSTTTS----TTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSC
T ss_pred HHHh--cccccHHHHHHHHHhhCcHHHHHH----HHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHH
Confidence 5542 233444567777777777655333 23356666666777777777777777666655521
Q ss_pred -------------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc
Q 046039 184 -------------RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTN 250 (502)
Q Consensus 184 -------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 250 (502)
.++.+|-.+-.+|...+.+.-|.-.--.+.- .|| ....++..|-..|-+++-+.+++.....
T Consensus 184 ~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 184 GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp SGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 3677888888888888887766554433331 222 1223556677778888877777766633
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----------CcchHHHHHHHHHhcCChHHHHH
Q 046039 251 CFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKK-----------GLSCWNSMVFGLAMNGYENEAIK 308 (502)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~ 308 (502)
. ......|+.|.-.|++- ++++..+.++..-.+ ....|..++-.|.+-.++|.|..
T Consensus 259 E-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred C-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 2 34566777777777654 566666665543321 12368888888888888876654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.7e-05 Score=56.71 Aligned_cols=82 Identities=13% Similarity=0.141 Sum_probs=60.9
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046039 340 QAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQII 417 (502)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 417 (502)
.|+..|+...+ ..+.+...+..+..+|...|++++|...|++... .| +...|..++.++...|++++|...|++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666654 2234567777788888888888888888877653 23 56678888888899999999999999988
Q ss_pred hcCCCC
Q 046039 418 ELDKNE 423 (502)
Q Consensus 418 ~~~p~~ 423 (502)
++.|.+
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 877653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00036 Score=53.85 Aligned_cols=112 Identities=13% Similarity=-0.068 Sum_probs=93.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 046039 301 GYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR----AGLLEE 376 (502)
Q Consensus 301 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 376 (502)
+++++|+.+|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 33444 666777778889999999998875 366777888888888 899999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 046039 377 AEKLIRSMPSDPDAIIWGSLLSACRK----HGNIEMAKQAAKQIIELDK 421 (502)
Q Consensus 377 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 421 (502)
|..+|++..+..++..+..|...|.. .+++++|.+.|+++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999998777788899999999998 8999999999999988643
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00014 Score=55.99 Aligned_cols=92 Identities=10% Similarity=-0.028 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhCCCC--C--CHHHHHHHHHHHHhcCCHHHH
Q 046039 337 KVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAG---LLEEAEKLIRSMPSD--P--DAIIWGSLLSACRKHGNIEMA 409 (502)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~A 409 (502)
....+.+.|.+.... + +++..+.-.+..++++.+ +.++++.+|+++... | ....+..|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 455666666666553 2 367777777788888877 566888888776542 4 244666777888888888888
Q ss_pred HHHHHHHHhcCCCCcchHHHH
Q 046039 410 KQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 410 ~~~~~~~~~~~p~~~~~~~~l 430 (502)
.+.++.+++.+|++..+....
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 888888888888877665544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0016 Score=58.41 Aligned_cols=137 Identities=11% Similarity=0.001 Sum_probs=64.4
Q ss_pred CcchHHHHHHHHH--hcC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc----CC-C---HHHHHHHHHHhhhh
Q 046039 286 GLSCWNSMVFGLA--MNG---YENEAIKLFSGLQSSNLKPD-YISFIAVLTACNH----SG-K---VNQAKDYFTLMTET 351 (502)
Q Consensus 286 ~~~~~~~l~~~~~--~~g---~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~----~~-~---~~~a~~~~~~~~~~ 351 (502)
+..+|...+.+.. ..+ ...+|..+|++.++. .|+ ...+..+..++.. .+ . .......++.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 4555655554432 222 346788888888875 343 3344433333320 00 0 00001111111110
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 352 YKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
...+.++..|..+...+...|++++|...++++.. +|+...|..++..+.-.|++++|.+.|++++.++|..+
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 02233444555554444445666666665555442 35555555555555556666666666666666655543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00034 Score=50.21 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=34.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcc-hHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 397 LSACRKHGNIEMAKQAAKQIIELDKNESC-GYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 397 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
+..+...|++++|+..|+++++.+|+++. .+..++.+|...|++++|++.+++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44455556666666666666666666655 66666666666666666666666555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00016 Score=52.15 Aligned_cols=67 Identities=13% Similarity=0.031 Sum_probs=52.3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 356 PSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
.+...+..+..+|.+.|++++|+..|+++.. .| +...|..++.+|...|++++|++.|++++++.|.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 3566777788888888888888888887754 24 4567888888888888899998888888876654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00036 Score=65.19 Aligned_cols=96 Identities=14% Similarity=0.030 Sum_probs=75.0
Q ss_pred cCCCHHHHHHHHHHhhhhc--CCCC---C-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCCH-HHHHHHH
Q 046039 334 HSGKVNQAKDYFTLMTETY--KIKP---S-IKHYSCMVDALGRAGLLEEAEKLIRSMPS---------DPDA-IIWGSLL 397 (502)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~--~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~-~~~~~l~ 397 (502)
..|++++|+.++++..+.. -+.| + ..+++.|..+|...|++++|..++++... .|++ .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578899999988876521 1222 2 46788999999999999999999887643 2543 4789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----cCCCCcchHHH
Q 046039 398 SACRKHGNIEMAKQAAKQIIE-----LDKNESCGYVL 429 (502)
Q Consensus 398 ~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~ 429 (502)
..|..+|++++|+.+++++++ +.|++|.+...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999999999987 57888865443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00065 Score=49.31 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=56.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS---------DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGY 427 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 427 (502)
+...+..++..+.+.|++..|..+|+.+.. .+...++..|+.++.+.|++++|...++++++++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 333445566666677777777776665432 13466889999999999999999999999999999998876
Q ss_pred HHHH
Q 046039 428 VLMS 431 (502)
Q Consensus 428 ~~l~ 431 (502)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6665
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.12 Score=50.53 Aligned_cols=123 Identities=10% Similarity=-0.017 Sum_probs=79.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 046039 301 GYENEAIKLFSGLQSSNLKPDYIS----FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEE 376 (502)
Q Consensus 301 g~~~~a~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 376 (502)
.+.+.|...+....... ..+... ...++......+...++...+...... ..+.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 47899999998886543 223322 223333344455356667777765432 2344444555555668899999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 377 AEKLIRSMPSDP--DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 377 A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
|...|+.|...+ .....-=++.++...|+.++|..+|+.+.+ + .++|..++
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lA 356 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVA 356 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHH
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHH
Confidence 999999998653 233333466678889999999999999975 3 35666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00086 Score=62.73 Aligned_cols=102 Identities=17% Similarity=0.101 Sum_probs=79.2
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCCH-HH
Q 046039 329 LTACNHSGKVNQAKDYFTLMTETY--KIKPS----IKHYSCMVDALGRAGLLEEAEKLIRSMPS---------DPDA-II 392 (502)
Q Consensus 329 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~-~~ 392 (502)
+..+...|++++|+..+++..+.. -+.|+ ..+++.++.+|...|++++|+.+++++.. .|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667789999999998887531 12222 46788899999999999999999887643 2443 47
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcchHHHH
Q 046039 393 WGSLLSACRKHGNIEMAKQAAKQIIE-----LDKNESCGYVLM 430 (502)
Q Consensus 393 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~l 430 (502)
++.|+..|...|++++|+..++++++ +.|++|.+...+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 89999999999999999999999987 678888665443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00079 Score=57.74 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=71.1
Q ss_pred HHHHHHHHHhCCC-CCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHhc-CCchH
Q 046039 374 LEEAEKLIRSMPS-DPD---AIIWGSLLSACRKH-----GNIEMAKQAAKQIIELDKNE-SCGYVLMSNLYAAS-YQFEE 442 (502)
Q Consensus 374 ~~~A~~~~~~~~~-~~~---~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 442 (502)
...|...+++..+ .|+ ...|..++..|... |+.++|.++|+++++++|+. ...+..++..+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 4566666666553 455 55788888888884 99999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHhhhcCCccCCc
Q 046039 443 AMEERLLMKEVKIEKEPG 460 (502)
Q Consensus 443 A~~~~~~~~~~~~~~~~~ 460 (502)
|.+++++....++...|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999887765455
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0022 Score=46.40 Aligned_cols=65 Identities=9% Similarity=-0.095 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELD-------KNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
+..-+..++..+...|++..|...|+.+++.. +..+.++..|+.+|.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45566789999999999999999999999842 345678999999999999999999999998753
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0027 Score=48.80 Aligned_cols=67 Identities=6% Similarity=-0.075 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 388 PDAIIWGSLLSACRKHG---NIEMAKQAAKQIIELD-K-NESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
++..+...+.+++.+++ +.++++.+++.+++.+ | ++...++.|+.+|.+.|++++|.++++.+.+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45566666666666666 4446666666666655 5 345566666666666666666666666665443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.042 Score=40.59 Aligned_cols=141 Identities=9% Similarity=0.049 Sum_probs=97.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 046039 297 LAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEE 376 (502)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 376 (502)
+.-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+.+.+.+-.. ...++.+|.+.|.
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~N-lKrVi~C~~~~n~--- 89 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNT--- 89 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTC---
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhc-HHHHHHHHHHhcc---
Confidence 34467778888887777663 2445566665555555566666777777655443333211 1234444444432
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 377 AEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 377 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
+.......+..+..+|+-+.-.+++..++.-.|.+|.+...++.+|.+.|+..+|.++++++-++|++
T Consensus 90 ------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33345556677888999999999999987777888999999999999999999999999999999985
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0025 Score=47.04 Aligned_cols=94 Identities=10% Similarity=-0.025 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHhcCCHHH
Q 046039 336 GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEE---AEKLIRSMPSD--P--DAIIWGSLLSACRKHGNIEM 408 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~ 408 (502)
.....+.+-|...... + .++..+--.+..++.+..+... ++.+++.+... | .-.....|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3455556666655553 3 2666666667778887776655 78888877654 3 12345567778888999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHH
Q 046039 409 AKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 409 A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
|.+.++.+++.+|+|..+.....
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999998877655543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.094 Score=53.78 Aligned_cols=154 Identities=13% Similarity=0.130 Sum_probs=97.2
Q ss_pred HHHHhcCCchhHHH-HHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHH
Q 046039 96 KAYAQLGLARDGAQ-LHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDES 174 (502)
Q Consensus 96 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 174 (502)
......++++.|.+ ++.. + ++......++..+.+.|..+.|.++.+.- ..-.......|+++.|
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~---------~~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ---------DQKFELALKVGQLTLA 671 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH---------HHHHHHHHHHTCHHHH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc---------chheehhhhcCCHHHH
Confidence 33445677777765 4411 1 11223366777788888888888765321 1223456678888888
Q ss_pred HHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC
Q 046039 175 RRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFEL 254 (502)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 254 (502)
.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+....+.+.....|.
T Consensus 672 ~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-- 738 (814)
T 3mkq_A 672 RDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK-- 738 (814)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC--
T ss_pred HHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc--
Confidence 8887765 3567888999999999999999999988743 33444445556676666655555554431
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhc
Q 046039 255 NTIVVTAIIDMYCKCGCPERALQVFNT 281 (502)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 281 (502)
++....+|.+.|++++|.+++.+
T Consensus 739 ----~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 ----FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp ----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----hHHHHHHHHHcCCHHHHHHHHHH
Confidence 22333445666777777666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.022 Score=51.16 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHH--hcCC---CHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHh---cC--C------HHHHHHHH
Q 046039 319 KPDYISFIAVLTAC--NHSG---KVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGR---AG--L------LEEAEKLI 381 (502)
Q Consensus 319 ~p~~~~~~~l~~~~--~~~~---~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g--~------~~~A~~~~ 381 (502)
+.+...|...+++. ...+ +..+|..+|++..+. .|+ ...+..+..+|.- .+ . ...+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 44556666666553 3333 457899999999864 454 4455544444431 11 1 11222222
Q ss_pred HhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 382 RSMPS-DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 382 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
..+.. ..++.+|..+...+...|++++|...+++++.++|+ ...|..++.++.-.|++++|.+.++++...++.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 22222 257778888888888889999999999999999974 667789999999999999999999988776553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0071 Score=42.54 Aligned_cols=71 Identities=7% Similarity=0.003 Sum_probs=56.8
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 355 KPSIKHYSCMVDALGRAGL---LEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 355 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
+.++..+..+..++...++ .++|..++++... .| ++..+..++..+.+.|++++|+..|+++++.+|+++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 4567777777777765544 7899999988764 34 6778888999999999999999999999999988543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.019 Score=58.93 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=26.4
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 334 HSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
..|+++.|.++.+.+ .+...|..+...+.+.|+++.|++.|.++.
T Consensus 664 ~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 345666666654332 244566666666666666666666666654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.066 Score=40.22 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=47.4
Q ss_pred CCChhHHHHHHHHHHhcCCH---HHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 046039 355 KPSIKHYSCMVDALGRAGLL---EEAEKLIRSMPS-DP--DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYV 428 (502)
Q Consensus 355 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 428 (502)
.|+..+--.+..++.+..+. .+++.+++.+.. .| .-...-.|.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45655555566666666543 456666666543 23 2234455667778888888888888888888887765544
Q ss_pred H
Q 046039 429 L 429 (502)
Q Consensus 429 ~ 429 (502)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.048 Score=40.26 Aligned_cols=65 Identities=5% Similarity=-0.133 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 388 PDAIIWGSLLSACRKHGNIEM---AKQAAKQIIELD-K-NESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
++..+-..+.+++.++++... ++.+++.++..+ | ......+.|+.++.+.|++++|.++++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444444443333 444444444333 2 2233444444444444444444444444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.44 E-value=0.78 Score=46.72 Aligned_cols=90 Identities=18% Similarity=0.110 Sum_probs=53.4
Q ss_pred HHHHHHHhhhCCCCChhHHHHHhccCCC-------CC-------cchHHHHH----HHHhcCCC---h-HHHHHHHHHhH
Q 046039 22 AASRILAFCTSPAGDINYAYLVFTQIKK-------PN-------LFIWNTII----RGFSQSST---P-RNAILLFIDML 79 (502)
Q Consensus 22 ~~~~ll~~~~~~~~~~~~A~~~~~~~~~-------~~-------~~~~~~li----~~~~~~~~---~-~~a~~~~~~~~ 79 (502)
....++..| .+.|...+|..+.-++.+ -+ ...|..++ ......-. + .+.+++.-.+.
T Consensus 147 Lv~~iv~~c-l~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy 225 (963)
T 4ady_A 147 IFERMIEKC-LKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFL 225 (963)
T ss_dssp HHHHHHHHH-HHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHH
Confidence 345566677 788888888888777765 11 12333332 22221112 2 24444444443
Q ss_pred hcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHH
Q 046039 80 VTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVK 116 (502)
Q Consensus 80 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 116 (502)
.+ . +..-|..+++++.+.++.+.+.++|..+.+
T Consensus 226 ~k--~--~~~dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 226 MN--M--PNCDYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HH--S--SSCCHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred Hh--C--CchhHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33 1 122477888888999999999999999864
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.024 Score=42.02 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCG 426 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 426 (502)
.+-.|.-++.+.|++++|.+..+.+++.+|+|..+
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 33444455555555555555555555555555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.00011 Score=67.18 Aligned_cols=240 Identities=12% Similarity=0.130 Sum_probs=162.3
Q ss_pred CCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046039 153 FDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACA 232 (502)
Q Consensus 153 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 232 (502)
..+.+|..|..+..+.+.+.+|++-|-+ ..|+..|..++.+..+.|.+++-..++...++..-.| ..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHH
Confidence 3556777788887777777777665533 3466677888888888888888888887776653233 33456777888
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC------------------------CCcc
Q 046039 233 KLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK------------------------KGLS 288 (502)
Q Consensus 233 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~ 288 (502)
+.++..+.++++ -.|+..-...+.+-|...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 888766544333 235666666677777778888877777765542 2456
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
+|..+-.+|...+.+.-|.-.--.++- .|+ .+..++..|...|.+++.+.+++.... --.....+|+.|.-.|
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTELaILY 273 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILY 273 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHHHHHH
Confidence 999999999999988776555444332 111 123456678888999998888887663 2245677888888877
Q ss_pred HhcCCHHHHHHHHHhCCCC---C-------CHHHHHHHHHHHHhcCCHHHHHH
Q 046039 369 GRAGLLEEAEKLIRSMPSD---P-------DAIIWGSLLSACRKHGNIEMAKQ 411 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~---~-------~~~~~~~l~~~~~~~~~~~~A~~ 411 (502)
++- ++++.++.++....+ | ....|.-++..|....+++.|..
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 654 566777666655433 2 34467788888888888886643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.031 Score=55.53 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 394 GSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 394 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
..-...|...|+++-|+++.++++..-|.+...|..|+.+|...|+|+.|+-.+..+.
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3345667889999999999999999999999999999999999999999999998885
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.42 Score=37.73 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=47.2
Q ss_pred HhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 046039 267 CKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFT 346 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 346 (502)
...|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... +..+.-.|.-.|+.+....+-+
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHH
Confidence 4455566555555444 2344556666666666666666655555432 1112222333345444443333
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046039 347 LMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP 385 (502)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 385 (502)
..... | -++.-...+.-.|+++++.++|.+..
T Consensus 85 iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 85 IAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 32221 1 12333344445566666666665544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.33 Score=38.27 Aligned_cols=129 Identities=12% Similarity=0.014 Sum_probs=84.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC
Q 046039 294 VFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL 373 (502)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (502)
.......|+++.|.++.+.+ .+...|..+.......|+++-|++.|..... +..+.-.|...|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCC
Confidence 34456778888888887654 4678888888888888888888888887642 2445566777788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh-cCCchHHHHHHHHh
Q 046039 374 LEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA-SYQFEEAMEERLLM 450 (502)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 450 (502)
.++-.++-+....+.+ ++....++.-.|++++++++|.+.-. ..++..+.+ -|-.+.|.++...+
T Consensus 76 ~e~L~kla~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRED---FGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 7776666544332222 34445566778999999888866532 112222333 46667777776665
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.57 Score=34.79 Aligned_cols=148 Identities=16% Similarity=0.082 Sum_probs=97.7
Q ss_pred HHHHHHH--HHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHHHhc
Q 046039 91 YPSLFKA--YAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGLAKC 168 (502)
Q Consensus 91 ~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 168 (502)
...|+.+ +.-.|..++..++..+..+.. +..-+|.++--....-+-+-..++++.+.+-.|.. .+
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis----------~C 74 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD----------KC 74 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG----------GC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH----------hh
Confidence 3444444 345688888888888877753 45556666666666666666677776665322222 12
Q ss_pred CCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 046039 169 GEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLV 248 (502)
Q Consensus 169 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 248 (502)
+++......+-.+. .+....+..+.....+|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-
T Consensus 75 ~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 75 QNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp SCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 33333333332221 34455566777888889989888888887554 37888888888999999999999999999888
Q ss_pred HcCCC
Q 046039 249 TNCFE 253 (502)
Q Consensus 249 ~~~~~ 253 (502)
+.|++
T Consensus 153 ~kG~k 157 (172)
T 1wy6_A 153 KKGEK 157 (172)
T ss_dssp HTTCH
T ss_pred HhhhH
Confidence 88854
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.076 Score=40.26 Aligned_cols=110 Identities=12% Similarity=0.092 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHhcCCCH------HHHHHHHHHhhhhcCCCCChh-HHHHHHH------HHHhcCCHHHHHHHHHhCCC
Q 046039 320 PDYISFIAVLTACNHSGKV------NQAKDYFTLMTETYKIKPSIK-HYSCMVD------ALGRAGLLEEAEKLIRSMPS 386 (502)
Q Consensus 320 p~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 386 (502)
-|..+|-..+....+.|+. +...++|++... .++|+.. .+...+. .+...++.++|.++|+.+.+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3667787777777777888 888888888877 5666531 1111111 12345788888888877642
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 387 --DPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 387 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
+.=...|......-.++|+..+|.+++.+++...|.....+....
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 122667777777778888888888888888888777655544433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.11 Score=39.42 Aligned_cols=56 Identities=5% Similarity=-0.161 Sum_probs=39.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCcc
Q 046039 402 KHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEK 457 (502)
Q Consensus 402 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 457 (502)
..++.++|.++|+.++++...-+.+|...+..-.++|+...|.+++......+..|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 44777788888888877655556667777777777888888888877777665543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.35 Score=41.64 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=51.5
Q ss_pred HHHHHHHHccCC--CC---hhhHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCchHHH
Q 046039 172 DESRRLFDKMVS--RN---TVSWNSMISGYVRN-----VKFKEALELFREMQEQNIKPSEFTMVSLLNACAK-LGAIRQG 240 (502)
Q Consensus 172 ~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a 240 (502)
..|...+++.++ |+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++. .|+.+.+
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 445555555533 32 34677777777773 7777777777777775422235566666666666 3777777
Q ss_pred HHHHHHHHHcCCC
Q 046039 241 EWIHNFLVTNCFE 253 (502)
Q Consensus 241 ~~~~~~~~~~~~~ 253 (502)
.+.+++.+.....
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 7777777776544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.21 Score=38.73 Aligned_cols=28 Identities=11% Similarity=-0.095 Sum_probs=24.2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 425 CGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 425 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
.+-+.++.||...|++++|+.+++.+..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 5778899999999999999999887644
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.11 Score=47.89 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh-----cCCccCCce
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE-----VKIEKEPGC 461 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 461 (502)
....++..+...|++++|+..+..++..+|-+..++..++.+|.+.|+..+|++.|+.+.+ .|++|.|..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445677788899999999999999999999999999999999999999999998888754 477776553
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.45 E-value=0.35 Score=33.60 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 046039 303 ENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVD 366 (502)
Q Consensus 303 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 366 (502)
.=+..+-++.+...++.|++......+++|.+.+++..|.++++.++.+.+ +...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 335666677777788999999999999999999999999999999987533 34556776664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.34 E-value=8.1 Score=39.56 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=10.4
Q ss_pred CCCChhHHHHHhccCC
Q 046039 33 PAGDINYAYLVFTQIK 48 (502)
Q Consensus 33 ~~~~~~~A~~~~~~~~ 48 (502)
+.++.+.+.++|..+.
T Consensus 242 ~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 242 NLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3367777777777753
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.6 Score=36.20 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC
Q 046039 362 SCMVDALGRAGLLEEAEKLIRSMPS 386 (502)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~ 386 (502)
..+..+|.+.+++++|+.+++.++.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3455566666666666666666654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=7.6 Score=37.94 Aligned_cols=48 Identities=2% Similarity=-0.022 Sum_probs=27.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 046039 397 LSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 397 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 446 (502)
+..+...|....|...+..+.+..+ +.-...++......|.++.++..
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~~~--~~~~~~la~~a~~~~~~~~~v~~ 435 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWDLSVQA 435 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCChHHHHHH
Confidence 3456677888888777777665321 22233445455556666655543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.56 E-value=1.6 Score=32.80 Aligned_cols=70 Identities=6% Similarity=-0.119 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 387 DPDAIIWGSLLSACRKHGNI---EMAKQAAKQIIELDKN-ESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
.|+..+-..+.+++.++.+. .+++.+++.+....|. .....+.|+.++.+.|++++|.++.+.+.+..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 46777777778888877654 4677788888777774 4567777777888888888888888887765443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.89 E-value=1.5 Score=32.50 Aligned_cols=67 Identities=6% Similarity=-0.117 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCchHHHHHHHHhhhcC
Q 046039 388 PDAIIWGSLLSACRKHGNI---EMAKQAAKQIIELDKN-ESCGYVLMSNLYAASYQFEEAMEERLLMKEVK 454 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 454 (502)
|++.+--.+.+++.++.+. .+++.+++.+.+..|. ....++.|+.++.+.|++++|.++.+.+.+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 5555555556666655533 3566666666655553 34555666666666666666666666665443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=91.81 E-value=1.6 Score=30.19 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=25.7
Q ss_pred HHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 046039 165 LAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQN 216 (502)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 216 (502)
+...|++++|..+.+...-||...|.+|.. .+.|-.+++...+..+...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344455555555555555555555544433 24455555555555555554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.45 E-value=1.5 Score=30.28 Aligned_cols=57 Identities=11% Similarity=0.009 Sum_probs=31.9
Q ss_pred HHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 046039 165 LAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTM 224 (502)
Q Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 224 (502)
+...|++++|..+.+...-||...|.+|.. .+.|-.+++...+..+...| .|....|
T Consensus 49 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 444555555555555555566666555433 35666666666666666655 4444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.31 E-value=5.5 Score=37.19 Aligned_cols=206 Identities=12% Similarity=0.100 Sum_probs=128.5
Q ss_pred CCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHH----HHHhc
Q 046039 199 NVKFKEALELFREMQEQ-----NIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIID----MYCKC 269 (502)
Q Consensus 199 ~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~ 269 (502)
.|+++.|++.+-.+.+. +..........++..|...|+++...+.+..+....-.. ......+++ .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788998888776542 345567778889999999999999888777666543222 222233333 22233
Q ss_pred CChH--HHHHHHhcCCC---CCcc-------hHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHH
Q 046039 270 GCPE--RALQVFNTVPK---KGLS-------CWNSMVFGLAMNGYENEAIKLFSGLQSS--NLKPD---YISFIAVLTAC 332 (502)
Q Consensus 270 g~~~--~A~~~~~~~~~---~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~ 332 (502)
...+ .-..+.+.+.. .-.. ....|...+...|++.+|..++..+... |..+. ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3332 23333433322 1111 3456788899999999999999998642 22222 23566667788
Q ss_pred hcCCCHHHHHHHHHHhhhh-cCCC--CC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 046039 333 NHSGKVNQAKDYFTLMTET-YKIK--PS--IKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIE 407 (502)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~-~~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 407 (502)
...+++..|..++..+... .... |+ ...+...+..+...+++.+|-+.|.++ ...+...++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~------------~~~~~~~~d~~ 255 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI------------YQTDAIKSDEA 255 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH------------HHHHHHHSCHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------HhcccccCCHH
Confidence 8899999999999887431 1122 22 234566677777888888887776554 34455566666
Q ss_pred HHHHHHHHHH
Q 046039 408 MAKQAAKQII 417 (502)
Q Consensus 408 ~A~~~~~~~~ 417 (502)
....++..++
T Consensus 256 ~~~~~L~~~v 265 (445)
T 4b4t_P 256 KWKPVLSHIV 265 (445)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6555555554
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=91.22 E-value=5.3 Score=32.57 Aligned_cols=93 Identities=12% Similarity=0.051 Sum_probs=37.9
Q ss_pred CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046039 152 EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNAC 231 (502)
Q Consensus 152 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 231 (502)
.++..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.+..+ +...+..+.+ .++...-...+.++
T Consensus 92 ~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 92 DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADAL 167 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3333333344444444444333333333333344444444444444444432 3333333332 33444444445555
Q ss_pred hccCchHHHHHHHHHHHH
Q 046039 232 AKLGAIRQGEWIHNFLVT 249 (502)
Q Consensus 232 ~~~~~~~~a~~~~~~~~~ 249 (502)
...+. ..+...+..+.+
T Consensus 168 ~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 168 GEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHCS-HHHHHHHHHHHH
T ss_pred HHhCc-hhHHHHHHHHHh
Confidence 55544 233333333433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.15 E-value=3.8 Score=43.73 Aligned_cols=82 Identities=12% Similarity=0.037 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC----CCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046039 257 IVVTAIIDMYCKCGCPERALQVFNTVP----KKGL----SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAV 328 (502)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 328 (502)
.-|..++..+.+.+.++.+.++-.... ..+. ..|..+...+...|++++|...+..+..... -...+..+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 346667777777787777666554322 2221 1577788888888999988888877765433 34556666
Q ss_pred HHHHhcCCCHHH
Q 046039 329 LTACNHSGKVNQ 340 (502)
Q Consensus 329 ~~~~~~~~~~~~ 340 (502)
+..++..|..+.
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 666665555433
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.79 E-value=0.97 Score=33.36 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 046039 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVD 366 (502)
Q Consensus 305 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 366 (502)
+..+-++.+...++.|++......+++|.+.+++..|.++|+.++.+. .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 455666777778899999999999999999999999999999998753 444556776665
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.07 E-value=9.5 Score=33.65 Aligned_cols=170 Identities=13% Similarity=0.041 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHH
Q 046039 257 IVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLF----SGLQSSNLKPDYISFIAVLTAC 332 (502)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~p~~~~~~~l~~~~ 332 (502)
..|.++..-|.+.+++++|++++..- ...+.+.|+...|.++- +-+.+.+++++......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34556667788889999988876542 33455566665554443 5555667788887777777776
Q ss_pred hcCCCHH-HHHHHHHHhhh---hcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 046039 333 NHSGKVN-QAKDYFTLMTE---TYK--IKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNI 406 (502)
Q Consensus 333 ~~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 406 (502)
.....-+ .=..+.+.+.+ ..| -.-++.....+...|.+.+++.+|...|- ...++++..+..++.-+...+..
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCC
Confidence 6544211 11222222211 112 23356777888899999999999999884 23344556776666555544432
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 407 EMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 407 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
.++-- +....+--|...++...|..+++...+
T Consensus 184 ~e~dl--------------fiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 HTAPL--------------YCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGHHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHH--------------HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22221 222223346778889999887766554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.35 E-value=4.5 Score=43.18 Aligned_cols=123 Identities=6% Similarity=-0.097 Sum_probs=80.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-------------------
Q 046039 327 AVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD------------------- 387 (502)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------- 387 (502)
.++..+...+.++.+.++..-. +.++..--.++.+|...|++++|.+.|++....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 3444555556666555543322 223333344566777788888888888765320
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCc----chHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 388 ------PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDK-NES----CGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 388 ------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
.-...|..++..+.+.|.++.+.++.+.+++..+ ++. ..|..+...+...|++++|...+..+.+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 1123567778888889999999999999988543 333 2577788888899999999888877665443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.65 E-value=3.4 Score=37.83 Aligned_cols=70 Identities=6% Similarity=-0.085 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-----cCCCCchhHHH
Q 046039 190 NSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVT-----NCFELNTIVVT 260 (502)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 260 (502)
..++..+...|+++++...+..+.... +.+...+..+|.++...|+..+|...|+.+.+ .|+.|++.+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 445667778899999998888887765 67888889999999999999999888887654 47778766544
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.26 E-value=0.62 Score=39.43 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=43.6
Q ss_pred HHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 046039 367 ALGRAGLLEEAEKLIRS-MPSDP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES 424 (502)
Q Consensus 367 ~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 424 (502)
...+.|++++|+..... ++.+| |...-..|+..+|-.|++++|.+-++.+.+++|...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 45577888888876654 44456 566667788888888888888888888888888744
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.99 E-value=2.1 Score=42.66 Aligned_cols=124 Identities=11% Similarity=0.041 Sum_probs=75.3
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHhHhcCCCCCCcccHH--HHHHHHHhcCC-chhHHHHHHHHHHh------CCCC-ch-
Q 046039 56 NTIIRGFSQSST-PRNAILLFIDMLVTSPIQPQRLTYP--SLFKAYAQLGL-ARDGAQLHGRVVKQ------GLEF-DQ- 123 (502)
Q Consensus 56 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~- 123 (502)
..++..+...++ .+.|+++|+++... .|...++. .++..+...++ --+|.+++.+.++. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 344555555666 47799999998875 34333222 22222222221 22355555444321 1111 11
Q ss_pred ---------hHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccC
Q 046039 124 ---------FIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMV 182 (502)
Q Consensus 124 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 182 (502)
.....=...+...|+++-|+++-++... +.+..+|..|..+|...|+++.|+-.++.++
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1223334567778999999998887654 4567789999999999999999999988885
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.34 E-value=8 Score=31.11 Aligned_cols=54 Identities=20% Similarity=0.098 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCcc
Q 046039 404 GNIEMAKQAAKQIIE--LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEK 457 (502)
Q Consensus 404 ~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 457 (502)
++...+.++|..+.. ++-..+.+|...+..+...|++++|.++++.-++.+-+|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566666666654 334455566666666666666666666666665555443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.52 E-value=18 Score=31.63 Aligned_cols=165 Identities=7% Similarity=0.010 Sum_probs=95.1
Q ss_pred HHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046039 161 MIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALE----LFREMQEQNIKPSEFTMVSLLNACAKLGA 236 (502)
Q Consensus 161 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 236 (502)
+..=|.+.+++++|++++.. -...+.+.|+...|-+ +++...+.+++++......++..+.....
T Consensus 39 l~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~ 107 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDP 107 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 34455566666666666544 2344556677655555 45556667888898888888877765432
Q ss_pred hH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhc---CChHHH
Q 046039 237 IR-QGEWIHNFLV----TNC--FELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMN---GYENEA 306 (502)
Q Consensus 237 ~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a 306 (502)
-+ .-.++.+.++ +.| ..-++.....+...|.+.|++.+|+..|-.-...++..+..++--+... |...++
T Consensus 108 ~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~ 187 (312)
T 2wpv_A 108 SEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTV 187 (312)
T ss_dssp TCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred CCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchH
Confidence 11 1233344443 332 2246788889999999999999999888643322344444443333332 332222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 307 IKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 307 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
- ...-..++ .|.-.|+...|..+++...+.
T Consensus 188 d--------------lf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 188 A--------------EFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp H--------------HHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 1 11111222 244567888888888876543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.05 E-value=6 Score=27.61 Aligned_cols=62 Identities=13% Similarity=0.152 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 046039 202 FKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIID 264 (502)
Q Consensus 202 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (502)
.=++.+-++.+....+.|++....+.+++|.+.+++..|.++++-+..+. .....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 33455556666666677777777777777777777777777777766553 222445555543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=84.91 E-value=11 Score=31.92 Aligned_cols=119 Identities=16% Similarity=0.149 Sum_probs=65.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh----hHHHHHHHHHHhc
Q 046039 296 GLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSI----KHYSCMVDALGRA 371 (502)
Q Consensus 296 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 371 (502)
...+.|..++++.....-++.. +-|...-..++..+|-.|+++.|.+-++...+. .|+. ..|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 3456677777777777766653 235566666777777778888888777776543 3332 233333322
Q ss_pred CCHHHHH-HHHHhCCC----CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 372 GLLEEAE-KLIRSMPS----DPDAIIWGSLLSAC--RKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 372 g~~~~A~-~~~~~~~~----~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
+... ++|.--.. .....-...++.+. ...|+.++|.+.-.++.+.-|..+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 12211110 01122223344443 3457888888888887777666554
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=83.78 E-value=16 Score=29.58 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=7.6
Q ss_pred chhHHHHHHHHHHhCCC
Q 046039 122 DQFIHNTIIYMYANCGF 138 (502)
Q Consensus 122 ~~~~~~~l~~~~~~~g~ 138 (502)
+..+-...+..+...|+
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 44444444444444444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.69 E-value=28 Score=32.38 Aligned_cols=182 Identities=6% Similarity=0.034 Sum_probs=112.5
Q ss_pred cCCHHHHHHHHHccCC---------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH----hc
Q 046039 168 CGEIDESRRLFDKMVS---------RNTVSWNSMISGYVRNVKFKEALELFREMQEQ-NIKPSEFTMVSLLNAC----AK 233 (502)
Q Consensus 168 ~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~----~~ 233 (502)
.++++.|++.+-.+.+ .+......++..|...|+++...+.+..+.+. |..+. ....+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhc
Confidence 3678888877755421 23445778889999999999998888776543 32222 223333332 22
Q ss_pred cCchHHHH--HHHHHHHH--cC-CCC---chhHHHHHHHHHHhcCChHHHHHHHhcCCCC----C-----cchHHHHHHH
Q 046039 234 LGAIRQGE--WIHNFLVT--NC-FEL---NTIVVTAIIDMYCKCGCPERALQVFNTVPKK----G-----LSCWNSMVFG 296 (502)
Q Consensus 234 ~~~~~~a~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-----~~~~~~l~~~ 296 (502)
....+... .+.+.+.. .| +-. .......|...|...|++.+|..++..+... . +..+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 23222211 11111110 11 111 2234467888999999999999999876521 1 2367777888
Q ss_pred HHhcCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 046039 297 LAMNGYENEAIKLFSGLQS----SNLKPDY--ISFIAVLTACNHSGKVNQAKDYFTLMTET 351 (502)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~----~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 351 (502)
|...+++..|..++++... ....|+. ..+...+..+...+++.+|.+.|.++...
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999999999988642 2222222 34556666677788888888888777653
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=83.58 E-value=16 Score=29.34 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHHhccCc
Q 046039 219 PSEFTMVSLLNACAKLGA 236 (502)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~ 236 (502)
++...-...+.++...|+
T Consensus 150 ~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 150 EDGWVRQSAADALGEIGG 167 (201)
T ss_dssp SSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344444444445554444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.94 E-value=28 Score=30.44 Aligned_cols=170 Identities=14% Similarity=0.069 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 046039 257 IVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKL----FSGLQSSNLKPDYISFIAVLTAC 332 (502)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~~~p~~~~~~~l~~~~ 332 (502)
..|.++..-|.+.+++++|++++..- ...+.+.|+...|.++ ++...+.+.+++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44556667788888898888887652 3445566776665553 55556677888888887777776
Q ss_pred hcCCCHH-HHHHHHHHhh----hhcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 046039 333 NHSGKVN-QAKDYFTLMT----ETYK-IKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKH--- 403 (502)
Q Consensus 333 ~~~~~~~-~a~~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~--- 403 (502)
..-..-+ .-.++++.+. +..+ -.-++.....+...|.+.|++.+|...|-. ....++..+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCC
Confidence 5422111 1122222222 1101 123667788888999999999999988762 2122455666555555554
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 404 GNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 404 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
|...++--++-++ +--|.-.|+...|..+++...+
T Consensus 182 ~~~~e~dlf~~Ra--------------VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 182 IEDSTVAEFFSRL--------------VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCHHHHHHHHHHH--------------HHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHH--------------HHHHHHhcCHHHHHHHHHHHHH
Confidence 5555443333322 2235667888999888876653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 502 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.4 bits (137), Expect = 1e-09
Identities = 45/346 (13%), Positives = 111/346 (32%), Gaps = 14/346 (4%)
Query: 167 KCGEIDESRRLFDKMVSR---NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFT 223
+ G+ + + R ++ + NT + S + + + + +QN +E
Sbjct: 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE-A 69
Query: 224 MVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVP 283
+L N + G +++ + + + + + + +
Sbjct: 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129
Query: 284 KKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKD 343
G + L++ +P++ + L + +
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN--AQGEIWL 187
Query: 344 YFTLMTETYKIKPS-IKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSAC 400
+ + P+ + Y + + L A + + A S A++ G+L
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247
Query: 401 RKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME-ERLLMKEVKIEKEP 459
+ G I++A ++ IEL + Y ++N EA + ++ +
Sbjct: 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307
Query: 460 GCSLIEVDGEVHEFVAGGRLHPKA----PEVYLLLNDLGLLIQEMG 501
+L + E RL+ KA PE ++L ++Q+ G
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 2e-06
Identities = 29/179 (16%), Positives = 60/179 (33%), Gaps = 14/179 (7%)
Query: 264 DMYCKCGCPERALQVFNTVPKKGLSC---WNSMVFGLAMNGYENEAIKLFSGLQSSNLKP 320
++ + +RA+ + + ++ G + AI + ++ L+P
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR--RAIELQP 268
Query: 321 DYISFIAVL-TACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEA-- 377
+ L A G V +A+D + + + + G +EEA
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA--DSLNNLANIKREQGNIEEAVR 326
Query: 378 --EKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434
K + P A +L S ++ G ++ A K+ I + + Y M N
Sbjct: 327 LYRKALEVFPEFAAA--HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 3e-06
Identities = 42/358 (11%), Positives = 106/358 (29%), Gaps = 47/358 (13%)
Query: 131 YMYANCGFLSEARLMFDEVDTEF--DVVAWNSMIIGLAKCGEIDESRRLFDKMVSRN--- 185
+ G A ++ + + + +C +D S + +N
Sbjct: 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66
Query: 186 TVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHN 245
+++++ + Y + +EA+E +R + + A + +
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 246 FLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLS-CWNSMVFGLAMNGYEN 304
L N + +A + + + W+++ G
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186
Query: 305 EAIKLFSGLQSSNLKPDYISFIAVL-TACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSC 363
AI F ++ L P+++ L + ++A + + +
Sbjct: 187 LAIHHFE--KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV--HGN 242
Query: 364 MVDALGRAGLLEEA----EKLIRSMPSDPDAII--------------------------- 392
+ GL++ A + I P PDA
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 393 -----WGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAME 445
+L + R+ GNIE A + ++ +E+ + + ++++ + +EA+
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 502 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.74 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.67 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.41 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.31 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.27 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.25 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.22 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.21 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.19 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.05 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.94 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.93 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.92 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.91 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.88 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.83 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.83 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.81 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.81 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.8 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.78 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.73 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.72 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.71 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.7 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.69 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.69 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.66 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.62 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.51 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.49 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.48 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.46 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.46 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.42 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.26 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.24 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.23 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.23 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.16 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.13 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.1 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.07 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.76 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.76 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.67 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.49 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.48 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.08 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.7 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.57 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.28 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.24 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.03 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.93 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.11 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.4e-24 Score=202.01 Aligned_cols=373 Identities=13% Similarity=0.038 Sum_probs=294.4
Q ss_pred HHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 046039 59 IRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGF 138 (502)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 138 (502)
...+.+.|++++|++.|+++.+. .+-+...+..+..++.+.|++++|...++.+++.. +.+..++..+..+|...|+
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 44556778888888888888765 23345567777788888888888888888888775 3366778888888888888
Q ss_pred hhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHcc---CCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 046039 139 LSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKM---VSRNTVSWNSMISGYVRNVKFKEALELFREMQ 213 (502)
Q Consensus 139 ~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 213 (502)
+++|...+..... +.+...+..........+....+....... ..................+....+...+....
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 8888888877653 233333444444444445544444444333 33455556666777778888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchH
Q 046039 214 EQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCW 290 (502)
Q Consensus 214 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 290 (502)
... +.+...+..+...+...|+++.|...++...+.. +.+...+..+...+...|++++|...+++... .....+
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 240 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHH
Confidence 764 5567788888888999999999999999988875 44677788889999999999999999887654 344577
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh
Q 046039 291 NSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR 370 (502)
Q Consensus 291 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (502)
..+...+...|++++|+..|++..+... -+..++..+..++...|++++|.+.++.... ..+.+...+..+...+..
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHH
Confidence 8888999999999999999999988643 3567888899999999999999999999887 445677888889999999
Q ss_pred cCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046039 371 AGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQ 439 (502)
Q Consensus 371 ~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 439 (502)
.|++++|+..|++... .| +..++..++.+|...|++++|+..|+++++++|+++.++..|+.+|.+.|+
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999998765 35 577899999999999999999999999999999999999999999998885
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2e-24 Score=201.02 Aligned_cols=374 Identities=13% Similarity=0.067 Sum_probs=311.0
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCH
Q 046039 94 LFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEI 171 (502)
Q Consensus 94 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 171 (502)
+...+.+.|++++|.+.++++.+.. +-+..++..+..+|...|++++|...|++... +.+..+|..+..++.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 4556778899999999999999875 44788899999999999999999999998754 44567889999999999999
Q ss_pred HHHHHHHHccCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 046039 172 DESRRLFDKMVS---RNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLV 248 (502)
Q Consensus 172 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 248 (502)
++|+..+..... .+...+..........+....+........... .................+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 999999988844 334445555556666666677777666665554 4444555556666777888888888888877
Q ss_pred HcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 046039 249 TNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISF 325 (502)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 325 (502)
... +.+...+..+...+...|++++|...+++..+ .+..+|..+...+...|++++|+..+++....+ ..+...+
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 765 44667788889999999999999999987654 345588899999999999999999999998864 3466778
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc
Q 046039 326 IAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKH 403 (502)
Q Consensus 326 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 403 (502)
..+..++...|++++|...|++..+. .+.+...+..+..++...|++++|.+.++.... ..+...+..++..+...
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 88889999999999999999998863 345578889999999999999999999987754 24677889999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCc
Q 046039 404 GNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKA 483 (502)
Q Consensus 404 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 483 (502)
|++++|++.|+++++.+|+++.++..++.+|...|++++|++.++++.+ .+|++
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------------l~P~~ 372 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--------------------------ISPTF 372 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--------------------------TCTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCC
Confidence 9999999999999999999999999999999999999999999999863 46788
Q ss_pred hHHHHHHHHHHHHHHh
Q 046039 484 PEVYLLLNDLGLLIQE 499 (502)
Q Consensus 484 ~~~~~~l~~~~~~~~~ 499 (502)
++.+..|+.++..+++
T Consensus 373 ~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 373 ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 8999999999988764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.4e-16 Score=143.59 Aligned_cols=276 Identities=11% Similarity=-0.011 Sum_probs=180.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 046039 191 SMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCG 270 (502)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 270 (502)
.....+.+.|++++|+..|+++++.. |-+...|..+..++...|+++.|...+.++.+.. +-+...+..++.+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45566777777777777777777764 4456677777777777777777777777777664 334566666777777777
Q ss_pred ChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 046039 271 CPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTE 350 (502)
Q Consensus 271 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 350 (502)
++++|...++.+...++........ ..... ...+.......+..+...+.+.++...+.....
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~--------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTP--------------AEEGA---GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC--------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHh--------------hhhhh---hhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777766544322110000000 00000 000000011111122333456777777777765
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 046039 351 TYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYV 428 (502)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 428 (502)
.....++...+..+...+...|++++|...|++... .| +...|..++.++...|++++|++.|+++++++|+++.++.
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 244 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 244 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHH
Confidence 534445667778888889999999999999988653 34 5778899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHhc
Q 046039 429 LMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQEM 500 (502)
Q Consensus 429 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 500 (502)
.++.+|.+.|++++|++.|++..+..+.. ++ .+ ....+-...++..+......+++.
T Consensus 245 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~-~~-------------~~~~~~~~~~~~~l~~al~~~~~~ 301 (323)
T d1fcha_ 245 NLGISCINLGAHREAVEHFLEALNMQRKS-RG-PR-------------GEGGAMSENIWSTLRLALSMLGQS 301 (323)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTC---------------------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCcC-hh-hh-------------hhhHHHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999987643221 11 00 022233445667777776666654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=9.2e-15 Score=131.50 Aligned_cols=268 Identities=15% Similarity=0.056 Sum_probs=195.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHccCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046039 159 NSMIIGLAKCGEIDESRRLFDKMVS--R-NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG 235 (502)
Q Consensus 159 ~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 235 (502)
-.....+.+.|++++|+..|+++++ | ++.+|..+..++...|++++|...|.+..+.. +-+...+..+..++...|
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 3445567778888888888877743 3 46678888999999999999999999988875 556788888888999999
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046039 236 AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQS 315 (502)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 315 (502)
++++|...++.+...... ............ .. .+.......+..+...+.+.+|...+.+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPA-YAHLVTPAEEGA-GG---------------AGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp CHHHHHHHHHHHHHTSTT-TGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccc-hHHHHHhhhhhh-hh---------------cccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999988875422 111111000000 00 0000111112233445667788888888776
Q ss_pred CCC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHH
Q 046039 316 SNL-KPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAII 392 (502)
Q Consensus 316 ~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~ 392 (502)
... .++...+..+...+...|++++|+..++..... .+-+...|..+..+|.+.|++++|.+.|+++.. .| +...
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence 432 345677888888999999999999999998864 234577888999999999999999999998764 34 5778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-----------hHHHHHHHHHhcCCchHHHHH
Q 046039 393 WGSLLSACRKHGNIEMAKQAAKQIIELDKNESC-----------GYVLMSNLYAASYQFEEAMEE 446 (502)
Q Consensus 393 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~A~~~ 446 (502)
|..++.+|.+.|++++|+..|+++++++|++.. ++..+..++...|+.+.+...
T Consensus 243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999998888765 345677788888887766543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=5.8e-11 Score=107.55 Aligned_cols=262 Identities=11% Similarity=-0.036 Sum_probs=175.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC-----CchhHHHH
Q 046039 191 SMISGYVRNVKFKEALELFREMQEQNIKPS----EFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE-----LNTIVVTA 261 (502)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ 261 (502)
.....+...|++++|+.++++.++.....+ ...+..+..++...|++++|...+++..+.... .....+..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 345566777888888888877766531111 234555667777778888888887776653211 11234455
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC-------CC----cchHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCHHHHH
Q 046039 262 IIDMYCKCGCPERALQVFNTVPK-------KG----LSCWNSMVFGLAMNGYENEAIKLFSGLQSSN----LKPDYISFI 326 (502)
Q Consensus 262 l~~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~ 326 (502)
+...+...|++..+...+..... .. ...+..+...+...|+++.+...+....... .......+.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 66677777887777776665431 11 1245556677888888888888887776532 222344555
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC------CCHHHHHH
Q 046039 327 AVLTACNHSGKVNQAKDYFTLMTETYKIKP-----SIKHYSCMVDALGRAGLLEEAEKLIRSMPSD------PDAIIWGS 395 (502)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~ 395 (502)
.....+...+++..+...+........-.. ....+..+...+...|++++|...+++.... .....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 666667777888888887776554221111 1234455667778889999999998887642 12445667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh------cCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 396 LLSACRKHGNIEMAKQAAKQIIE------LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 396 l~~~~~~~~~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
++.++...|++++|...+++++. ..|.....+..++.+|.+.|++++|.+.+++..+
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88889999999999999998874 2355567888899999999999999998888754
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=8.9e-12 Score=112.07 Aligned_cols=231 Identities=8% Similarity=-0.085 Sum_probs=166.4
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHH
Q 046039 198 RNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG--AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERA 275 (502)
Q Consensus 198 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 275 (502)
..|++++|+.+++...+.. +-+...+..+..++...+ +++.+...+..+.+.........+......+...+.++.|
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH
Confidence 3455778888888887764 556666666666665554 4788888888888875332233334455677778889999
Q ss_pred HHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc
Q 046039 276 LQVFNTVPKKGL---SCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETY 352 (502)
Q Consensus 276 ~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 352 (502)
+..++.+.+.++ .+|+.+..++...|++++|...+...... .|+.. .....+...+..+.+...+.....
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~-- 236 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL-- 236 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH--
Confidence 999988877544 47888888888888888776655544432 12211 122333445566667777777665
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 046039 353 KIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLM 430 (502)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 430 (502)
..+++...+..++..+...|+.++|...+.+.... | +..+|..++.++...|++++|++.++++++++|++...|..|
T Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 237 GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 33445556667778888899999999999887653 5 456888999999999999999999999999999999999988
Q ss_pred HHHHHh
Q 046039 431 SNLYAA 436 (502)
Q Consensus 431 ~~~~~~ 436 (502)
...+.-
T Consensus 317 ~~~~~~ 322 (334)
T d1dcea1 317 RSKFLL 322 (334)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 877654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=3.3e-11 Score=103.91 Aligned_cols=221 Identities=8% Similarity=-0.082 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 046039 202 FKEALELFREMQEQNIKP---SEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQV 278 (502)
Q Consensus 202 ~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 278 (502)
.+.++.-+++........ ...++..+..++.+.|++++|...|++.++.. +-++.++..+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 344555555555432111 12345555666667777777777777777654 34566667777777777777777777
Q ss_pred HhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCC
Q 046039 279 FNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIK 355 (502)
Q Consensus 279 ~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 355 (502)
|+++.+. +..+|..++.++...|++++|...|++..+... .+......+..++...+..+.+..+....... .
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---D 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---C
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---c
Confidence 7765542 344677777777788888888888887777532 23443333444444455555554444444332 2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHH-HhCCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 046039 356 PSIKHYSCMVDALGRAGLLEEAEKLI-RSMPS----DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYV 428 (502)
Q Consensus 356 ~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 428 (502)
+....++ ++..+............. ..... .| ...+|..++..+...|++++|...|+++++.+|++..-|.
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222222 222222222222222222 22221 12 2346778899999999999999999999999998765443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=8.2e-10 Score=99.75 Aligned_cols=258 Identities=9% Similarity=0.017 Sum_probs=153.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC----CC-CCHHHHHHHHHHHhccCchHHHHHHHHHHHHc----CCCC---c
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQN----IK-PSEFTMVSLLNACAKLGAIRQGEWIHNFLVTN----CFEL---N 255 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~ 255 (502)
.+..+..++...|++++|+..|++..+.. .. .....+..+...+...|++..+...+...... .... .
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 34445555666666666666666554321 00 01223344445555666666666666554431 1111 1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC----CC----cchHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--
Q 046039 256 TIVVTAIIDMYCKCGCPERALQVFNTVPK----KG----LSCWNSMVFGLAMNGYENEAIKLFSGLQSS----NLKPD-- 321 (502)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-- 321 (502)
...+..+...+...|+++.+...+..... .+ ...+..+...+...+++..+...+.+.... +..+.
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 22344455666666777766666654332 11 124444555666777777777776655431 11111
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CC-CHH
Q 046039 322 YISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKP--SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-------DP-DAI 391 (502)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~~~ 391 (502)
...+......+...|+++.|...++.........+ ....+..+..++...|++++|...++++.. .| ...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 23345556667788999999999988765322111 234455678889999999999999887642 13 345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------cchHHHHHHHHHhcCCchHHHH
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNE---------SCGYVLMSNLYAASYQFEEAME 445 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~ 445 (502)
.+..++.+|...|++++|.+.+++++++.+.. ...+..+...+...++.+++..
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 77888999999999999999999998854321 1233445555667788887765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=8.9e-11 Score=103.94 Aligned_cols=227 Identities=8% Similarity=0.031 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-ChHHHHHHHhcCCCC---CcchHHHHHHH
Q 046039 221 EFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCG-CPERALQVFNTVPKK---GLSCWNSMVFG 296 (502)
Q Consensus 221 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~ 296 (502)
...|+.+...+.+.+..++|..+++.+++.+ |-+..+|+....++...| ++++|+..++++.+. +..+|..+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 3455666667777888888988888888875 446677777777777766 478888888876543 45578888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC---
Q 046039 297 LAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL--- 373 (502)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 373 (502)
+...|++++|+..++++.+.... +...|..+..++...|++++|++.++.+.+. -+.+...|+.+..++.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccch
Confidence 88888888888888888876433 6778888888888888888888888888764 23346667666666665554
Q ss_pred ---HHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--chHHHHHHHHHhc--CCchHHH
Q 046039 374 ---LEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNES--CGYVLMSNLYAAS--YQFEEAM 444 (502)
Q Consensus 374 ---~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~--g~~~~A~ 444 (502)
+++|...+.++.. .| +...|..+...+.. ...+++.+.++.++++.|+.. ..+..++.+|... +..+.+.
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 277 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 5677777766543 34 56677766665544 345777788888877776643 3445566666543 6667777
Q ss_pred HHHHHhhh
Q 046039 445 EERLLMKE 452 (502)
Q Consensus 445 ~~~~~~~~ 452 (502)
..+++..+
T Consensus 278 ~~~~ka~~ 285 (315)
T d2h6fa1 278 DILNKALE 285 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.2e-09 Score=96.40 Aligned_cols=240 Identities=10% Similarity=0.090 Sum_probs=150.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 046039 188 SWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG-AIRQGEWIHNFLVTNCFELNTIVVTAIIDMY 266 (502)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (502)
.|+.+...+.+.+.+++|+..++++++.+ |-+...|.....++...| ++++|...++.+++.. +-+..++..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 45666667777777888888888887765 556666777777766655 4778888888777765 44667777777777
Q ss_pred HhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC------
Q 046039 267 CKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGK------ 337 (502)
Q Consensus 267 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------ 337 (502)
.+.|++++|+..++++.+. +..+|..++..+...|++++|+..++++++.++. +...|..+..++...+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhh
Confidence 8888888888888776653 3457777778888888888888888888875432 45566655555444333
Q ss_pred HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhc--CC------
Q 046039 338 VNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMP----SDPDAIIWGSLLSACRKH--GN------ 405 (502)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~--~~------ 405 (502)
+++|++.+...... .+.+...|..+...+...| .+++...++... ...+...+..++..|... ++
T Consensus 202 ~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 202 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 56777777777653 2345666666655554433 455555444332 123455556666665432 23
Q ss_pred -HHHHHHHHHHHH-hcCCCCcchHHHHHHH
Q 046039 406 -IEMAKQAAKQII-ELDKNESCGYVLMSNL 433 (502)
Q Consensus 406 -~~~A~~~~~~~~-~~~p~~~~~~~~l~~~ 433 (502)
+++|.++++... +.+|-....|..++..
T Consensus 279 ~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~ 308 (315)
T d2h6fa1 279 ILNKALELCEILAKEKDTIRKEYWRYIGRS 308 (315)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444444432 2455555555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.21 E-value=2.3e-09 Score=94.63 Aligned_cols=187 Identities=11% Similarity=0.038 Sum_probs=123.5
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCc----chHHHHHHHHHhcCChHHHHHHHH
Q 046039 236 AIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGL----SCWNSMVFGLAMNGYENEAIKLFS 311 (502)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~ 311 (502)
..+.+..++++.++...+.+...+...+..+...|+++.|..+|+.+.+..+ ..|...+..+.+.|+.+.|..+|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3466777777777654455566667777777777888888877776654222 256777777777777788888887
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---
Q 046039 312 GLQSSNLKPDYISFIAVLTA-CNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSD--- 387 (502)
Q Consensus 312 ~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 387 (502)
++.+.+.. +...|...+.. +...|+.+.|..+|+.+... .+.+...+...+..+.+.|+++.|..+|++....
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 77765433 33333333322 33456777788888877763 3445667777777777778888887777775321
Q ss_pred -C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 046039 388 -P--DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC 425 (502)
Q Consensus 388 -~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 425 (502)
| ....|...+..-...|+.+.+..+++++.+..|....
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 2 2346777777777778888888887777777766543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=4.3e-11 Score=103.21 Aligned_cols=216 Identities=12% Similarity=0.013 Sum_probs=152.0
Q ss_pred chHHHHHHHHHHHHcCCCC---chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHH
Q 046039 236 AIRQGEWIHNFLVTNCFEL---NTIVVTAIIDMYCKCGCPERALQVFNTVPK---KGLSCWNSMVFGLAMNGYENEAIKL 309 (502)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~ 309 (502)
+.+.+...++++....... ...++..+..+|.+.|++++|+..|++..+ .++.+|..++.+|...|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4455666666666543211 245677788999999999999999998765 4566999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC
Q 046039 310 FSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP 388 (502)
Q Consensus 310 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 388 (502)
|+++.+.... +..++..+..++...|+++.|...|+...+. .+.+......+...+.+.+..+.+..+...... .+
T Consensus 94 ~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 94 FDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 9999986432 4567888889999999999999999999874 233444444455555566655555444333221 11
Q ss_pred CHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 389 DAIIWGSLLSACR----KHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 389 ~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
....+. ++..+. ..+..+.+...+.......|....++..++.+|...|++++|.+.+++..+.++
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 111221 222222 223345555555555566677778899999999999999999999999986654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=2.4e-11 Score=109.23 Aligned_cols=253 Identities=8% Similarity=-0.053 Sum_probs=180.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH---HHHH-------hccCchHHHHHHHHHHHHcCCCCchhHHHH
Q 046039 192 MISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSL---LNAC-------AKLGAIRQGEWIHNFLVTNCFELNTIVVTA 261 (502)
Q Consensus 192 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---l~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 261 (502)
++......+..++|++++++.++.. |-+...|+.. +..+ ...|.+++|..+++.+.+.. +.+...+..
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~ 112 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 112 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 3333334445689999999988764 3334344322 2222 23445788999999988875 446667777
Q ss_pred HHHHHHhcC--ChHHHHHHHhcCCCCC---cchHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 046039 262 IIDMYCKCG--CPERALQVFNTVPKKG---LSCWN-SMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHS 335 (502)
Q Consensus 262 l~~~~~~~g--~~~~A~~~~~~~~~~~---~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 335 (502)
+..++...+ ++++|...+.++.+.+ ...|. .....+...+.+++|+..++.+...++. +...|..+..++...
T Consensus 113 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~ 191 (334)
T d1dcea1 113 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 191 (334)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHH
T ss_pred hhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Confidence 777776665 4788998888875543 33444 4446777789999999999999887543 677888888888888
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 046039 336 GKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAA 413 (502)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 413 (502)
|++++|...+...... .|.. ..+...+...+..+++...+..... . ++...+..++..+...|++.+|...+
T Consensus 192 ~~~~~A~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 265 (334)
T d1dcea1 192 HPQPDSGPQGRLPENV---LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKEL 265 (334)
T ss_dssp SCCCCSSSCCSSCHHH---HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhHHh---HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888877666655442 1211 1233344556666777776665432 2 34445666777888899999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 414 KQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 414 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
.++++.+|++..++..++.+|...|++++|.++++++.+.
T Consensus 266 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 266 QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=6.4e-09 Score=91.64 Aligned_cols=183 Identities=5% Similarity=-0.067 Sum_probs=144.6
Q ss_pred ChHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 046039 271 CPERALQVFNTVPK----KGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFT 346 (502)
Q Consensus 271 ~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 346 (502)
..++|..+|++..+ .+...|...+..+...|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45677777776543 34557888889999999999999999999986544445678888899999999999999999
Q ss_pred HhhhhcCCCCChhHHHHHHHH-HHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046039 347 LMTETYKIKPSIKHYSCMVDA-LGRAGLLEEAEKLIRSMPSD-P-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
.+.+. .+.+...|...+.. +...|+.+.|..+|+.+... | ++..|...+..+...|+++.|..+|+++++..|.+
T Consensus 159 ~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 99864 33344455444443 34468999999999988753 4 67799999999999999999999999999977755
Q ss_pred cc----hHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 424 SC----GYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 424 ~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
+. +|...+..-...|+.+.+.++.+++.+.-.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 43 677777766788999999999998876543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=2e-09 Score=79.38 Aligned_cols=89 Identities=17% Similarity=0.184 Sum_probs=70.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 046039 364 MVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFE 441 (502)
Q Consensus 364 l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 441 (502)
-+..+.+.|++++|+..|+++.. .| ++..|..++.++...|++++|+..++++++++|+++..|..++.++...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 45567778888888888877653 23 66678888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhh
Q 046039 442 EAMEERLLMKE 452 (502)
Q Consensus 442 ~A~~~~~~~~~ 452 (502)
+|+..+++..+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88888888764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.94 E-value=2.3e-09 Score=88.05 Aligned_cols=113 Identities=11% Similarity=-0.103 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHH
Q 046039 320 PDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLL 397 (502)
Q Consensus 320 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~ 397 (502)
|+...+......+.+.|++++|+..|+..... .|.+...|..++.+|.+.|++++|+..|+++.. .| ++.+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 55566666666677777777777777766653 234566666666777777777777777766654 24 455666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 398 SACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 398 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
.+|...|++++|+..|+++++++|++...+...+..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 7777777777777777777766665544433333333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=7.6e-09 Score=76.15 Aligned_cols=106 Identities=13% Similarity=-0.002 Sum_probs=92.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCC
Q 046039 328 VLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGN 405 (502)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~ 405 (502)
-...+...|++++|+..|+..++. .+.+...|..+..+|...|++++|+..+++... . .++..|..++.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 456678889999999999999874 355678899999999999999999999988764 3 478899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 406 IEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 406 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
+++|+..|+++++++|+++.++..+..+-.
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999999988887643
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=8.2e-09 Score=80.93 Aligned_cols=108 Identities=8% Similarity=-0.030 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHh
Q 046039 325 FIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRK 402 (502)
Q Consensus 325 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~ 402 (502)
+......|.+.|++++|+..|++..+. .+.+...|..+..+|...|++++|...|+++.. .| +...|..++.++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 444555677777777777777777763 234566777777777777777777777777653 23 55677777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 403 HGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 403 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
.|++++|...++++++++|+++.++..+..+.
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 77777777777777777777777766666553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=7.2e-09 Score=83.92 Aligned_cols=88 Identities=16% Similarity=0.086 Sum_probs=81.8
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 046039 365 VDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAM 444 (502)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 444 (502)
...+...|++++|++.|.++. +|++.+|..++.+|...|++++|++.|+++++++|+++..|..++.+|.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 556778999999999999875 5788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhc
Q 046039 445 EERLLMKEV 453 (502)
Q Consensus 445 ~~~~~~~~~ 453 (502)
+.|++....
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.88 E-value=1e-08 Score=89.47 Aligned_cols=162 Identities=12% Similarity=-0.026 Sum_probs=97.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHh-cCCCHHHHHHHHHHhhhhc---CCCC-Ch
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSS----NL-KPDYISFIAVLTACN-HSGKVNQAKDYFTLMTETY---KIKP-SI 358 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~---~~~~-~~ 358 (502)
+|..+..+|.+.|++++|+..+++..+. |. .....++..+...|. ..|+++.|++.+++..... +.++ ..
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 4455555555566666666555554331 10 111234455555553 4588888888888765321 1111 13
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc----
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPSD----P----D-AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC---- 425 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---- 425 (502)
.++..++..|...|++++|...|+++... + . ...+...+..+...|+++.|...++++.+.+|..+.
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~ 238 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence 45677888899999999999998875421 1 1 123455666778889999999999999998876443
Q ss_pred -hHHHHHHHHHh--cCCchHHHHHHHHh
Q 046039 426 -GYVLMSNLYAA--SYQFEEAMEERLLM 450 (502)
Q Consensus 426 -~~~~l~~~~~~--~g~~~~A~~~~~~~ 450 (502)
+...++.++.. .+.+++|+..|+.+
T Consensus 239 ~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34555555554 34577777766543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=2.5e-08 Score=78.07 Aligned_cols=87 Identities=24% Similarity=0.205 Sum_probs=40.9
Q ss_pred HHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 046039 366 DALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEA 443 (502)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 443 (502)
..|.+.|++++|...|+++.. .| +...|..++.+|...|++++|+..|+++++++|+++.++..++.+|...|++++|
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA 97 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 97 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHH
Confidence 334444444444444444432 12 3344444444444444444454444444444444444444444444444444444
Q ss_pred HHHHHHhhh
Q 046039 444 MEERLLMKE 452 (502)
Q Consensus 444 ~~~~~~~~~ 452 (502)
...+++...
T Consensus 98 ~~~~~~a~~ 106 (159)
T d1a17a_ 98 LRDYETVVK 106 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.83 E-value=6.7e-09 Score=75.74 Aligned_cols=90 Identities=13% Similarity=0.010 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046039 362 SCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQ 439 (502)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 439 (502)
..++..+.+.|++++|+..|+++.. .| ++..|..++.++.+.|++++|+..|+++++++|+++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 3467778899999999999999864 35 688999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhh
Q 046039 440 FEEAMEERLLMK 451 (502)
Q Consensus 440 ~~~A~~~~~~~~ 451 (502)
+++|++.+++..
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=1.3e-08 Score=80.58 Aligned_cols=61 Identities=20% Similarity=0.112 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
+|..++.+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..|+++.+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666666666666666666666666553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=6.4e-08 Score=78.15 Aligned_cols=124 Identities=11% Similarity=-0.030 Sum_probs=91.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC
Q 046039 294 VFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL 373 (502)
Q Consensus 294 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 373 (502)
...+...|+++.|++.|.++ .+|++.++..+..++...|++++|++.|++.++. -+.+...|..+..+|.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhcc
Confidence 55667788888888888764 3466777778888888888888888888888764 23456777788888888888
Q ss_pred HHHHHHHHHhCCC----CC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046039 374 LEEAEKLIRSMPS----DP--------------DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 374 ~~~A~~~~~~~~~----~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
+++|...|++... .+ ...++..++.++.+.|++++|.+.+++++++.|+.
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 8888887776531 10 13456677778888888888888888888887764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.80 E-value=1.2e-08 Score=83.56 Aligned_cols=95 Identities=15% Similarity=0.074 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
+...+...+..|.+.|++++|+..|+++.. .| ++..|..++.+|.+.|++++|+..|+++++++|+++.+|..++.+|
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 333344444444455555555555544332 12 3444444555555555555555555555555555555555555555
Q ss_pred HhcCCchHHHHHHHHhh
Q 046039 435 AASYQFEEAMEERLLMK 451 (502)
Q Consensus 435 ~~~g~~~~A~~~~~~~~ 451 (502)
...|++++|+..++++.
T Consensus 83 ~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 83 LEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55555555555444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.78 E-value=2.2e-08 Score=77.65 Aligned_cols=84 Identities=15% Similarity=0.063 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEE
Q 046039 391 IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEV 470 (502)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (502)
.+|..++.+|.+.|++++|++.++++++++|+++.+|..++.+|...|++++|+..|++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l----------------- 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL----------------- 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-----------------
Confidence 467789999999999999999999999999999999999999999999999999999998743
Q ss_pred EEEEeCCCCCCCchHHHHHHHHHHHHHHhc
Q 046039 471 HEFVAGGRLHPKAPEVYLLLNDLGLLIQEM 500 (502)
Q Consensus 471 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 500 (502)
.|++.++...+..+..++++.
T Consensus 131 ---------~P~n~~~~~~l~~~~~kl~~~ 151 (153)
T d2fbna1 131 ---------NPNNLDIRNSYELCVNKLKEA 151 (153)
T ss_dssp ---------STTCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHHHHHHH
Confidence 477888888888888877654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=2.9e-08 Score=73.14 Aligned_cols=108 Identities=11% Similarity=-0.024 Sum_probs=86.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhCCCC-CCH---HHHHHHHH
Q 046039 326 IAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGL---LEEAEKLIRSMPSD-PDA---IIWGSLLS 398 (502)
Q Consensus 326 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~~~---~~~~~l~~ 398 (502)
..++..+...+++++|++.|+..... -+.++.++..+..++.+.++ +++|+.+|+++... |+. .+|..++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 34667777888999999999998874 35567888888888887554 55799999988753 433 37888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046039 399 ACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYA 435 (502)
Q Consensus 399 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 435 (502)
+|.+.|++++|++.|+++++++|++..+...+..+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999988777765443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.72 E-value=2.8e-06 Score=72.40 Aligned_cols=230 Identities=10% Similarity=0.016 Sum_probs=139.6
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCCchhHHH
Q 046039 185 NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK----LGAIRQGEWIHNFLVTNCFELNTIVVT 260 (502)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 260 (502)
|+..+..|...+.+.+++++|+++|++..+.| +...+..|...+.. ..+...+...+......+. +....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhh
Confidence 44556666666777777777777777776655 33444444444443 3355555555555554431 12222
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hcCC
Q 046039 261 AIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTAC----NHSG 336 (502)
Q Consensus 261 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~~ 336 (502)
.+...+... ....++.+.|...++.....|... ....+...+ ....
T Consensus 75 ~l~~~~~~~---------------------------~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~~~ 124 (265)
T d1ouva_ 75 LLGNLYYSG---------------------------QGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGKVVTR 124 (265)
T ss_dssp HHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSSCC
T ss_pred ccccccccc---------------------------cccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCCcccc
Confidence 222222110 011345566666666666654321 111121111 2234
Q ss_pred CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 046039 337 KVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR----AGLLEEAEKLIRSMPSDPDAIIWGSLLSACRK----HGNIEM 408 (502)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 408 (502)
....+...+...... .+...+..|...|.. ..+...+..+++...+..++.....++..|.. ..++++
T Consensus 125 ~~~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 125 DFKKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp CHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred hhHHHHHHhhhhhcc----cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhh
Confidence 566666666665442 345556667666664 45677777777776655677777778777775 568999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHhhhcCCc
Q 046039 409 AKQAAKQIIELDKNESCGYVLMSNLYAA----SYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 409 A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 456 (502)
|+..|+++.+.+ ++..+..|+.+|.+ ..+.++|.++|++..+.|.+
T Consensus 201 A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 201 ALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 999999998764 56788889988886 44899999999999887754
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.71 E-value=4.9e-08 Score=77.22 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCceeEEEECC
Q 046039 389 DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDG 468 (502)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (502)
....|..++.++.+.|++++|+..++++++++|+++.+|..++.+|.+.|++++|+..|+++.+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------------- 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------------- 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 34567778888999999999999999999999999999999999999999999999999888753
Q ss_pred EEEEEEeCCCCCCCchHHHHHHHHHHHHHHh
Q 046039 469 EVHEFVAGGRLHPKAPEVYLLLNDLGLLIQE 499 (502)
Q Consensus 469 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 499 (502)
.|+++++...|..+...+++
T Consensus 141 -----------~p~n~~~~~~l~~~~~~l~~ 160 (169)
T d1ihga1 141 -----------APEDKAIQAELLKVKQKIKA 160 (169)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHHHH
Confidence 35567777777777766554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=1.4e-07 Score=74.36 Aligned_cols=86 Identities=8% Similarity=-0.045 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA 436 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 436 (502)
.+|+.+..+|.+.|++++|+..+++... .| ++..|..++.+|...|++++|+..|+++++++|+++.+...+..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3567788899999999999999988764 45 788999999999999999999999999999999999999999988877
Q ss_pred cCCchHHH
Q 046039 437 SYQFEEAM 444 (502)
Q Consensus 437 ~g~~~~A~ 444 (502)
.+...+..
T Consensus 143 ~~~~~~~e 150 (170)
T d1p5qa1 143 IRRQLARE 150 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=6.9e-07 Score=77.46 Aligned_cols=59 Identities=10% Similarity=-0.041 Sum_probs=36.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 046039 191 SMISGYVRNVKFKEALELFREMQEQ----NIKP-SEFTMVSLLNACAKLGAIRQGEWIHNFLVT 249 (502)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 249 (502)
.....|...|++++|.+.|.++.+. +-++ -..+|..+..+|.+.|++++|...++...+
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~ 105 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence 3456677777777777777766542 1111 124566666666777777777766665544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=3e-08 Score=73.01 Aligned_cols=112 Identities=10% Similarity=0.003 Sum_probs=91.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--cchHHHHHHHH
Q 046039 362 SCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACRKHG---NIEMAKQAAKQIIELDKNE--SCGYVLMSNLY 434 (502)
Q Consensus 362 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~ 434 (502)
..++..+...+++++|++.|++... ..++.++..++.++.+.+ ++++|+.+++++++.+|++ +.++..||.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4577888899999999999998865 357789999999998755 4567999999999988765 45889999999
Q ss_pred HhcCCchHHHHHHHHhhhcCCccCCceeEEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHh
Q 046039 435 AASYQFEEAMEERLLMKEVKIEKEPGCSLIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQE 499 (502)
Q Consensus 435 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 499 (502)
.+.|++++|+++++++.+. .|++.+....+..|...+++
T Consensus 83 ~~~g~~~~A~~~~~~aL~~--------------------------~P~~~~A~~l~~~I~~~~~k 121 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT--------------------------EPQNNQAKELERLIDKAMKK 121 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh--------------------------CcCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999853 45666776777777666654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.66 E-value=1.1e-07 Score=74.93 Aligned_cols=61 Identities=16% Similarity=0.090 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh
Q 046039 392 IWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE 452 (502)
Q Consensus 392 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 452 (502)
+|..+..+|.+.|++++|+..++++++++|+++..+..++.+|...|++++|...++++.+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666777777777777777777777777777777777777777777777777777653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=8.2e-09 Score=97.30 Aligned_cols=94 Identities=11% Similarity=-0.135 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046039 358 IKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAAS 437 (502)
Q Consensus 358 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 437 (502)
...+..+...+.+.|+.++|...+..........++..++..+...|++++|+..|+++++++|++...|..||.++...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~ 199 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK 199 (497)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHc
Confidence 34444555555566666665554443321111234555666666666666666666666666666666666666666666
Q ss_pred CCchHHHHHHHHhh
Q 046039 438 YQFEEAMEERLLMK 451 (502)
Q Consensus 438 g~~~~A~~~~~~~~ 451 (502)
|+..+|+..+.+..
T Consensus 200 ~~~~~A~~~y~ral 213 (497)
T d1ya0a1 200 GDHLTTIFYYCRSI 213 (497)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666665554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.51 E-value=9.7e-07 Score=69.32 Aligned_cols=93 Identities=10% Similarity=-0.034 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS-D-PDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA 436 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 436 (502)
.+|..+..+|.+.|++++|+..++++.. . .+...|..++.++...|++++|+..|+++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3566788889999999999999988764 3 4778999999999999999999999999999999999999999988777
Q ss_pred cCCchH-HHHHHHHhh
Q 046039 437 SYQFEE-AMEERLLMK 451 (502)
Q Consensus 437 ~g~~~~-A~~~~~~~~ 451 (502)
.+...+ ..+.+..|-
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 765544 334554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.49 E-value=6.9e-05 Score=63.44 Aligned_cols=229 Identities=10% Similarity=-0.024 Sum_probs=138.7
Q ss_pred CeeeHHHHHHHHHhcCCHHHHHHHHHccCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046039 154 DVVAWNSMIIGLAKCGEIDESRRLFDKMVS-RNTVSWNSMISGYVR----NVKFKEALELFREMQEQNIKPSEFTMVSLL 228 (502)
Q Consensus 154 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 228 (502)
|+..+..|...+.+.+++++|++.|++..+ .+..++..|...|.. ..+...|..++....+.+ .| .....+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-~~--~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YS--NGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CH--HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-cc--chhhccc
Confidence 345566777788889999999999999844 467777778888876 678999999999988876 33 3333333
Q ss_pred HHHh----ccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 046039 229 NACA----KLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFGLAMNGYEN 304 (502)
Q Consensus 229 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 304 (502)
..+. ...+.+.|...++...+.|.. .....+...+..... ......
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~---------------------------~~~~~~ 127 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKV---------------------------VTRDFK 127 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSS---------------------------SCCCHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCc---------------------------ccchhH
Confidence 3332 245677888888888776532 222222222221100 112233
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 046039 305 EAIKLFSGLQSSNLKPDYISFIAVLTACNH----SGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR----AGLLEE 376 (502)
Q Consensus 305 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 376 (502)
.+...+...... .+...+..+...+.. ..+...+..+++...+. + +......+...|.. ..++++
T Consensus 128 ~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~-g---~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 128 KAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc-c---ccccccchhhhcccCcccccchhh
Confidence 344444443332 233344444444432 34555666666665543 2 34444455555554 457888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 046039 377 AEKLIRSMPSDPDAIIWGSLLSACRK----HGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 377 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~ 422 (502)
|..+|++..+.-++..+..|+..|.. ..++++|.+.|+++.+.++.
T Consensus 201 A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 201 ALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 88888777655566677777777765 34778888888888776543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2.5e-07 Score=68.98 Aligned_cols=91 Identities=12% Similarity=0.140 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-------hHHHHH
Q 046039 361 YSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESC-------GYVLMS 431 (502)
Q Consensus 361 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l~ 431 (502)
+..++..|.+.|++++|+..|++... .| +...|..++.+|.+.|++++|+..++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 34567778888888888888877654 24 5778888888888888888888888888888877765 344555
Q ss_pred HHHHhcCCchHHHHHHHHhh
Q 046039 432 NLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 432 ~~~~~~g~~~~A~~~~~~~~ 451 (502)
.++...+++++|++.+++..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 66677778888888877765
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.46 E-value=7e-07 Score=70.31 Aligned_cols=87 Identities=7% Similarity=-0.059 Sum_probs=74.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046039 357 SIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLY 434 (502)
Q Consensus 357 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 434 (502)
....+..+..+|.+.|++++|+..++++.. .| ++..|..++.++...|++++|++.|+++++++|+++.+...+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455677788999999999999999998865 34 6789999999999999999999999999999999999999988877
Q ss_pred HhcCCchHH
Q 046039 435 AASYQFEEA 443 (502)
Q Consensus 435 ~~~g~~~~A 443 (502)
.+.....++
T Consensus 156 ~~l~~~~~~ 164 (169)
T d1ihga1 156 QKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.46 E-value=8e-07 Score=68.52 Aligned_cols=127 Identities=13% Similarity=-0.081 Sum_probs=90.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 046039 289 CWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDAL 368 (502)
Q Consensus 289 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (502)
.+...+..+.+.|++.+|+..|.+....-... ............. .....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~-------------~~~~~~~~~~~~~--------~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHT-------------EEWDDQILLDKKK--------NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC-------------TTCCCHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcch-------------hhhhhHHHHHhhh--------hHHHHHHhhHHHHH
Confidence 44556667777888888888887776531100 0000000000000 01234677789999
Q ss_pred HhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046039 369 GRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA 436 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 436 (502)
.+.|++++|+..++++.. .| +..+|..++.++...|++++|+..|+++++++|+++.+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999998764 35 778999999999999999999999999999999999998888766543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.42 E-value=0.00042 Score=59.83 Aligned_cols=136 Identities=10% Similarity=0.060 Sum_probs=71.4
Q ss_pred CCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCeeeHHHHHHHH
Q 046039 86 PQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVVAWNSMIIGL 165 (502)
Q Consensus 86 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 165 (502)
||..-...+...|.+.|.++.|..+|..+. -|..++.++.+.++++.|.+.+.+.. +..+|..+...+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~---~~~~~k~~~~~l 79 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFAC 79 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT---CHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC---CHHHHHHHHHHH
Confidence 444444555666667777777777776442 24556667777777777777766543 455666666777
Q ss_pred HhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046039 166 AKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLG 235 (502)
Q Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 235 (502)
.+......+.- .......++.....++..|-..|.++....+++...... +++...++.++..+++.+
T Consensus 80 ~~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 80 VDGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HhCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 66665554322 111122344444566677777777777777777665432 455556666666666543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.26 E-value=0.00099 Score=57.46 Aligned_cols=136 Identities=10% Similarity=0.067 Sum_probs=80.1
Q ss_pred CCCChHHHHHHHHhhhCCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHH
Q 046039 16 LAKDPIAASRILAFCTSPAGDINYAYLVFTQIKKPNLFIWNTIIRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLF 95 (502)
Q Consensus 16 ~~p~~~~~~~ll~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 95 (502)
-.|+......+...| -+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+.
T Consensus 10 ~~~n~~d~~~i~~~c-~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~-------~~~~~k~~~ 76 (336)
T d1b89a_ 10 NGPNNAHIQQVGDRC-YDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVC 76 (336)
T ss_dssp TCC-----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHH
T ss_pred cCCCcCCHHHHHHHH-HHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC-------CHHHHHHHH
Confidence 356666666667777 788888888888876543 6777788888888888877765442 445777777
Q ss_pred HHHHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcC
Q 046039 96 KAYAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCG 169 (502)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 169 (502)
..+.+......+ .+.......++.....++..|-..|.+++...+++.... +.+...++.++..|++.+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 777766555433 222233344555566778888888888888888876543 445556777777777654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=2.9e-06 Score=59.01 Aligned_cols=84 Identities=10% Similarity=-0.048 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhcCCchHHHHHHHHhhhcCCccCCcee
Q 046039 390 AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE-------SCGYVLMSNLYAASYQFEEAMEERLLMKEVKIEKEPGCS 462 (502)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 462 (502)
...+..++..+.+.|++++|+..|++++++.|.+ ..++..|+.+|.+.|++++|+..++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--------- 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------- 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh---------
Confidence 4455678999999999999999999999865543 357899999999999999999999999753
Q ss_pred EEEECCEEEEEEeCCCCCCCchHHHHHHHHHHHHHHh
Q 046039 463 LIEVDGEVHEFVAGGRLHPKAPEVYLLLNDLGLLIQE 499 (502)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 499 (502)
.|++++...+++.+...+++
T Consensus 76 -----------------~P~~~~a~~Nl~~~~~~l~k 95 (95)
T d1tjca_ 76 -----------------DPEHQRANGNLKYFEYIMAK 95 (95)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHC
T ss_pred -----------------CcCCHHHHHHHHHHHHHhCc
Confidence 57778888888887776653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.23 E-value=4.6e-06 Score=60.13 Aligned_cols=90 Identities=13% Similarity=-0.075 Sum_probs=64.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 046039 190 NSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELNTIVVTAIIDMYCKC 269 (502)
Q Consensus 190 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (502)
..+...+.+.|++++|+..|++.++.. +-+...|..+..++...|++++|...++++++.. +.+..++..+..+|...
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 345666777777777777777777764 4467777777777777777777777777777765 34566667777777777
Q ss_pred CChHHHHHHHhc
Q 046039 270 GCPERALQVFNT 281 (502)
Q Consensus 270 g~~~~A~~~~~~ 281 (502)
|++++|.+.|++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 777777777665
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.23 E-value=2.3e-06 Score=67.52 Aligned_cols=119 Identities=12% Similarity=0.032 Sum_probs=84.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 046039 328 VLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLL--EEAEKLIRSMPSDPDAIIWGSLLSACRKHGN 405 (502)
Q Consensus 328 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 405 (502)
........|++++|.+.|......+.-.+-... ..+.+ ..+..+ + ......+..++.++...|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w~~~~r~~l-~----~~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQFVEPFATAL-V----EDKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTTHHHHHHHH-H----HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHHHHHHHHHH-H----HHHHHHHHHHHHHHHHCCC
Confidence 334567788888888888887753211110000 00110 011111 1 1123467889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhh-----cCCccCCc
Q 046039 406 IEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKE-----VKIEKEPG 460 (502)
Q Consensus 406 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 460 (502)
+++|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++.+ .|+.|.+.
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 99999999999999999999999999999999999999999999854 57766543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=3.5e-06 Score=58.62 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 046039 359 KHYSCMVDALGRAGLLEEAEKLIRSMPS--------DPD-AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVL 429 (502)
Q Consensus 359 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 429 (502)
..+-.++..+.+.|++++|...|++... .++ ..++..++.++.+.|++++|+..++++++++|+++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 3344577778888888888888876642 122 5688999999999999999999999999999999999888
Q ss_pred HHHH
Q 046039 430 MSNL 433 (502)
Q Consensus 430 l~~~ 433 (502)
+...
T Consensus 86 l~~~ 89 (95)
T d1tjca_ 86 LKYF 89 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8643
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.13 E-value=1.1e-06 Score=66.88 Aligned_cols=74 Identities=14% Similarity=0.054 Sum_probs=48.6
Q ss_pred HHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 046039 374 LEEAEKLIRSMPS-DP-DAIIWGSLLSACRKHG-----------NIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQF 440 (502)
Q Consensus 374 ~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 440 (502)
+++|+..|+++.. +| +..+|..++.+|...| ++++|.+.|+++++++|++...+..|+.+
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------- 129 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------
Confidence 3455555555432 23 4455666666555433 47899999999999999999888888765
Q ss_pred hHHHHHHHHhhhcC
Q 046039 441 EEAMEERLLMKEVK 454 (502)
Q Consensus 441 ~~A~~~~~~~~~~~ 454 (502)
.+|..++.+..+.|
T Consensus 130 ~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 130 AKAPQLHAEAYKQG 143 (145)
T ss_dssp HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHh
Confidence 35555666555554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=5.2e-07 Score=84.72 Aligned_cols=217 Identities=12% Similarity=-0.058 Sum_probs=85.9
Q ss_pred HHHHHHHccCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCchHHHHHHHHHHH
Q 046039 173 ESRRLFDKMVS--R-NTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEF-TMVSLLNACAKLGAIRQGEWIHNFLV 248 (502)
Q Consensus 173 ~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 248 (502)
+|.+.|++... | ...++..+..++...+++++| |++++.. .|+.. .+.. ....-...+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~--e~~Lw~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKV--EQDLWNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTH--HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhH--HHHHHHHHHHHHHHHHHHhc
Confidence 45556655532 2 244555566666666666655 5555443 22111 1110 00000112334445555544
Q ss_pred HcCCCCchhHHHH--HHHHHHhcCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 046039 249 TNCFELNTIVVTA--IIDMYCKCGCPERALQVFNTVPKK---GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLKPDYI 323 (502)
Q Consensus 249 ~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 323 (502)
+....++..-... +...+...+.++.|+..+....+. +...+..+...+.+.|+.++|...+....... ...
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~ 153 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQH 153 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH---HHH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHH
Confidence 4332222221111 111222334555555555544332 22345555555555666666655554443311 123
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 046039 324 SFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS--DPDAIIWGSLLSACR 401 (502)
Q Consensus 324 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 401 (502)
++..+...+...|++++|...|++.... .+.+...|+.|+..|...|+..+|...|.+... .|-+.++..|...+.
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4445555555556666666666665542 223345555666666666666666655554432 244555555554443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.10 E-value=1.8e-06 Score=65.68 Aligned_cols=85 Identities=15% Similarity=0.059 Sum_probs=60.0
Q ss_pred HhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 046039 369 GRAGLLEEAEKLIRSMPS-DP-DAIIWGSLLSACRK----------HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA 436 (502)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~----------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 436 (502)
.+.+.+++|...|+.... .| ++..+..++.+|.. .+.+++|+..|+++++++|+++.++..++.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 344455666666655532 23 44455555555543 3456899999999999999999999999999987
Q ss_pred cCC-----------chHHHHHHHHhhhc
Q 046039 437 SYQ-----------FEEAMEERLLMKEV 453 (502)
Q Consensus 437 ~g~-----------~~~A~~~~~~~~~~ 453 (502)
.|+ +++|.+.|++..+.
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhccccc
Confidence 764 57788888877644
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.07 E-value=7.4e-06 Score=63.20 Aligned_cols=89 Identities=19% Similarity=0.043 Sum_probs=66.8
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC----CC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------
Q 046039 365 VDALGRAGLLEEAEKLIRSMPS----DP----------DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKN-------- 422 (502)
Q Consensus 365 ~~~~~~~g~~~~A~~~~~~~~~----~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-------- 422 (502)
+..+.+.|++++|+..|++... .| ....|+.++.+|...|++++|+..+++++++.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3445566777777776666532 11 1357888999999999999999999999875432
Q ss_pred ---CcchHHHHHHHHHhcCCchHHHHHHHHhhhc
Q 046039 423 ---ESCGYVLMSNLYAASYQFEEAMEERLLMKEV 453 (502)
Q Consensus 423 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 453 (502)
...++..++.+|...|++++|++.|++..+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1235788999999999999999999998754
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=2.8e-05 Score=57.40 Aligned_cols=94 Identities=7% Similarity=0.024 Sum_probs=61.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-----HHHHHHHH
Q 046039 327 AVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS----DPD-----AIIWGSLL 397 (502)
Q Consensus 327 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~~l~ 397 (502)
.+...+...|++++|+..|.+.+.. .+.+...+..+..+|.+.|++++|...++++.. .+. ..+|..++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 3445556666666666666666653 233455666666666666666666666665542 111 23566778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC
Q 046039 398 SACRKHGNIEMAKQAAKQIIELDKN 422 (502)
Q Consensus 398 ~~~~~~~~~~~A~~~~~~~~~~~p~ 422 (502)
..+...+++++|++.|++.+..+|+
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 8888888999999999998887765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.76 E-value=4.7e-05 Score=63.90 Aligned_cols=129 Identities=12% Similarity=0.005 Sum_probs=89.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHhcCCHH
Q 046039 297 LAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPS-IKHYSCMVDALGRAGLLE 375 (502)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 375 (502)
..+.|++++|+..+++.++..+ -+...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 3467899999999999988743 37788888999999999999999999998764 343 445555555555445444
Q ss_pred HHHHHHHhC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 046039 376 EAEKLIRSM--PSDP-DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVL 429 (502)
Q Consensus 376 ~A~~~~~~~--~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 429 (502)
++..-.... ...| +...+...+..+...|++++|.+.++++.+..|..+..+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~ 138 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND 138 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccc
Confidence 443322221 1123 23344555667888899999999999999999888776543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=0.0071 Score=54.99 Aligned_cols=334 Identities=10% Similarity=-0.002 Sum_probs=169.8
Q ss_pred HHHHhcCCChHHHHHHHHHhHhcCCCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhCC
Q 046039 59 IRGFSQSSTPRNAILLFIDMLVTSPIQPQRLTYPSLFKAYAQLGLARDGAQLHGRVVKQGLEF-DQFIHNTIIYMYANCG 137 (502)
Q Consensus 59 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 137 (502)
+.-..+.|+...+..+...+... | ...|...-..-...++.. ..++..-+.+..-.| ........+..+.+.+
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~dy----p-L~pYl~~~~l~~~~~~~~-~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~ 86 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKDY----P-LYPYLEYRQITDDLMNQP-AVTVTNFVRANPTLPPARTLQSRFVNELARRE 86 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTTS----T-THHHHHHHHHHHTGGGCC-HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHhhhcCC----C-CHHHHHHHHHHhccccCC-HHHHHHHHHHCCCChhHHHHHHHHHHHHHhcc
Confidence 34456677888777777666321 2 223333322222222211 122222222221111 1122344456667777
Q ss_pred ChhHHHHHHhhcCCCCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 046039 138 FLSEARLMFDEVDTEFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNI 217 (502)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 217 (502)
+++.....+..- +.+...-.....+....|+...|...+..+-.. ....++.+-.+|..+.+.|
T Consensus 87 ~w~~~~~~~~~~--p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~-------------~~~~p~~c~~l~~~~~~~~- 150 (450)
T d1qsaa1 87 DWRGLLAFSPEK--PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT-------------GKSQPNACDKLFSVWRASG- 150 (450)
T ss_dssp CHHHHHHHCCSC--CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC-------------SSCCCTHHHHHHHHHHHTT-
T ss_pred CHHHHHHhccCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------CCCCchHHHHHHHHHHhcC-
Confidence 777655544321 223333334556666677777776665544110 0112333344444444444
Q ss_pred CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCcchHHHHHHH
Q 046039 218 KPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFELN-TIVVTAIIDMYCKCGCPERALQVFNTVPKKGLSCWNSMVFG 296 (502)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 296 (502)
..+...+-.-+......|+...|..+...+ +++ .......+.... +...+......... +......+..+
T Consensus 151 ~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l-----~~~~~~~~~a~~~l~~---~p~~~~~~~~~~~~-~~~~~~~~~~~ 221 (450)
T d1qsaa1 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLAN---NPNTVLTFARTTGA-TDFTRQMAAVA 221 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHH---CGGGHHHHHHHSCC-CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHhhC-----ChhHHHHHHHHHHHHh---ChHhHHHHHhcCCC-ChhhhHHHHHH
Confidence 334444444444455556666666554432 222 223333333332 23333333333222 22222222233
Q ss_pred HHh--cCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh
Q 046039 297 LAM--NGYENEAIKLFSGLQSSNLKPDYISFI----AVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR 370 (502)
Q Consensus 297 ~~~--~g~~~~a~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 370 (502)
+.+ ..+.+.+...+......... +..... .+.......+..+.+..++...... ..+.......+....+
T Consensus 222 l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~ 297 (450)
T d1qsaa1 222 FASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALG 297 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHH
T ss_pred HHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHH
Confidence 322 35778888888887664322 222222 2222334456678888877776543 2344445556666677
Q ss_pred cCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046039 371 AGLLEEAEKLIRSMPSDP--DAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMS 431 (502)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 431 (502)
.+++..+...+..+...+ ...-.-=++.++...|+.+.|...|..+.. . .++|..|+
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~---~~fYG~LA 356 (450)
T d1qsaa1 298 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-Q---RGFYPMVA 356 (450)
T ss_dssp HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-S---CSHHHHHH
T ss_pred cCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-C---CChHHHHH
Confidence 899999999999987653 223334477888899999999999998864 2 24666665
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.67 E-value=6.2e-05 Score=57.77 Aligned_cols=93 Identities=16% Similarity=0.053 Sum_probs=62.5
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCC----------hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC---
Q 046039 331 ACNHSGKVNQAKDYFTLMTETYKIKPS----------IKHYSCMVDALGRAGLLEEAEKLIRSMPS--------DPD--- 389 (502)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~--- 389 (502)
.+...|++++|++.|++.+....-.|+ ...|+.+..+|...|++++|...+++... .++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344556666666666666543222121 34567777788888888888777665432 121
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 046039 390 --AIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNE 423 (502)
Q Consensus 390 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 423 (502)
...+..++.+|...|++++|++.|++++++.|..
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 2256778999999999999999999999875543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.49 E-value=5e-05 Score=63.71 Aligned_cols=122 Identities=16% Similarity=0.105 Sum_probs=89.2
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHH
Q 046039 332 CNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPS-DPD-AIIWGSLLSACRKHGNIEMA 409 (502)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A 409 (502)
....|++++|+..+++.++ .-+.+...+..++..|+..|++++|...|+.... .|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4567999999999999987 4466788999999999999999999999998864 354 45566666665544444443
Q ss_pred HHHHHHHHh-cCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCC
Q 046039 410 KQAAKQIIE-LDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKI 455 (502)
Q Consensus 410 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 455 (502)
......... .+|++...+...+.++...|+.++|.+.++++.+...
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 332222111 2344555666777889999999999999999877654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.48 E-value=0.0016 Score=50.65 Aligned_cols=123 Identities=8% Similarity=-0.050 Sum_probs=83.6
Q ss_pred HHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHHHHhcCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHH
Q 046039 127 NTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIGLAKCGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKE 204 (502)
Q Consensus 127 ~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 204 (502)
..........|++++|.+.|.+... +.+.... ....+-+...-..+.......+..++..+.+.|++++
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~---------~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD---------LRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG---------GTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc---------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence 4445677788999999888877543 1111000 0000000011111111223567788899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-----cCCCCchhHH
Q 046039 205 ALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVT-----NCFELNTIVV 259 (502)
Q Consensus 205 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 259 (502)
|+..++.+++.. +-+...|..++.++...|+.++|.+.|+++.+ .|+.|+..+.
T Consensus 86 Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 86 VIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 999999999886 77899999999999999999999999998754 5888876653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.08 E-value=0.0022 Score=45.35 Aligned_cols=74 Identities=18% Similarity=0.107 Sum_probs=41.1
Q ss_pred CChhHHHHHHHHHHhcC---CHHHHHHHHHhCCC-CC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 046039 356 PSIKHYSCMVDALGRAG---LLEEAEKLIRSMPS-DP-DA-IIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVL 429 (502)
Q Consensus 356 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 429 (502)
++..+--....++.+.. +.++++.+|+++.. .| +. ..+..|+.+|.+.|++++|.+.++++++.+|++..+...
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 33334334444454443 34566666665543 23 22 355566666677777777777777777777766655433
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.70 E-value=0.048 Score=37.94 Aligned_cols=141 Identities=9% Similarity=0.049 Sum_probs=97.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHH
Q 046039 297 LAMNGYENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEE 376 (502)
Q Consensus 297 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 376 (502)
+...|..++..+++.+.... .+..-|+.++--....-+-+...++++.+-+.+.+.|-.. ...++.+|...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~N-lk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhc-HHHHHHHHHHhcc---
Confidence 45567777777877777653 3555666666655556666677777777665444443321 1234444444332
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 377 AEKLIRSMPSDPDAIIWGSLLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 377 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
+...+...+..+..+|+-+.-.+++..+++.+..+|.+...++.+|.+.|...++-++++++-++|++
T Consensus 85 ------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 23344555677788899999999999988877778999999999999999999999999999998875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.57 E-value=0.013 Score=42.75 Aligned_cols=82 Identities=10% Similarity=-0.079 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCchHH
Q 046039 372 GLLEEAEKLIRSMPSDPDAIIWGSLLSACRK----HGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAA----SYQFEEA 443 (502)
Q Consensus 372 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A 443 (502)
.+.++|..++++..+.-++.....|...|.. ..++++|.+.|+++.+. .++.....|+.+|.. ..+.++|
T Consensus 37 ~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 37 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHH
Confidence 3445555555544433344444444444443 34566666666666553 234455666666655 3456667
Q ss_pred HHHHHHhhhcCC
Q 046039 444 MEERLLMKEVKI 455 (502)
Q Consensus 444 ~~~~~~~~~~~~ 455 (502)
.+++++..+.|.
T Consensus 115 ~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 115 VKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 777776666554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.28 E-value=0.36 Score=43.20 Aligned_cols=388 Identities=12% Similarity=-0.008 Sum_probs=192.0
Q ss_pred CCCCChhHHHHHhccCCC-CCcchHHHHHHHH--hcCCChHHHHHHHHHhHhcCCCCCCc-ccHHHHHHHHHhcCCchhH
Q 046039 32 SPAGDINYAYLVFTQIKK-PNLFIWNTIIRGF--SQSSTPRNAILLFIDMLVTSPIQPQR-LTYPSLFKAYAQLGLARDG 107 (502)
Q Consensus 32 ~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a 107 (502)
.+.|+...+.++...+.. | ...|-..-..- .......+...+++.-. ..|-. ..-...+..+.+.++++..
T Consensus 17 ~~~~~~~~~~~~~~~L~dyp-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p----~~P~~~~lr~~~l~~L~~~~~w~~~ 91 (450)
T d1qsaa1 17 WDNRQMDVVEQMMPGLKDYP-LYPYLEYRQITDDLMNQPAVTVTNFVRANP----TLPPARTLQSRFVNELARREDWRGL 91 (450)
T ss_dssp HHTTCHHHHHHHSGGGTTST-THHHHHHHHHHHTGGGCCHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHhhhcCCC-CHHHHHHHHHHhccccCCHHHHHHHHHHCC----CChhHHHHHHHHHHHHHhccCHHHH
Confidence 377888888888888854 2 22232221111 12234444443333221 11211 1223334556666766554
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCC--CCCeeeHHHHHHH------------------HHh
Q 046039 108 AQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDT--EFDVVAWNSMIIG------------------LAK 167 (502)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~------------------~~~ 167 (502)
+..+. ..+.+...-.....+....|+.+.|...+..+-. ...+..+..+... ...
T Consensus 92 ~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~ 166 (450)
T d1qsaa1 92 LAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMK 166 (450)
T ss_dssp HHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 43221 2234555555667777788888777776654321 2223333333333 333
Q ss_pred cCCHHHHHHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cCchHHHHHHHH
Q 046039 168 CGEIDESRRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAK--LGAIRQGEWIHN 245 (502)
Q Consensus 168 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~ 245 (502)
.|+...|..+...+...........+..... ...+..... . ..++......+..++.+ ..+.+.+...+.
T Consensus 167 ~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~---~--~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~ 238 (450)
T d1qsaa1 167 AGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR---T--TGATDFTRQMAAVAFASVARQDAENARLMIP 238 (450)
T ss_dssp TTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH---H--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHh---c--CCCChhhhHHHHHHHHHHhccChhHHHHHHH
Confidence 4555555555554433333333333333322 222222111 1 12333333333333322 246667777776
Q ss_pred HHHHcCCCCchhHHHHH----HHHHHhcCChHHHHHHHhcCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046039 246 FLVTNCFELNTIVVTAI----IDMYCKCGCPERALQVFNTVPKK--GLSCWNSMVFGLAMNGYENEAIKLFSGLQSSNLK 319 (502)
Q Consensus 246 ~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 319 (502)
........ +..-...+ .......+..+.+...+...... +.....-.+......+++..+...+..|... ..
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~ 316 (450)
T d1qsaa1 239 SLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPME-AK 316 (450)
T ss_dssp HHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GG
T ss_pred hhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cc
Confidence 66654322 22212111 12222345556666655443322 2222223344455667778777777776432 22
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHH----HHHH
Q 046039 320 PDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGRAGLLEEAEKLIRSMPSDPDAI----IWGS 395 (502)
Q Consensus 320 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~ 395 (502)
....-..-+.+++...|+.+.|..+|..+.. .++ .|..|.. .+.|..-.. . .......+... .-..
T Consensus 317 ~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa--~~Lg~~~~~-~-~~~~~~~~~~~~~~~~~~~ 386 (450)
T d1qsaa1 317 EKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAA--QRIGEEYEL-K-IDKAPQNVDSALTQGPEMA 386 (450)
T ss_dssp GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHH--HHTTCCCCC-C-CCCCCSCCCCHHHHSHHHH
T ss_pred cHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHH--HHcCCCCCC-C-cCCCCccHHHhhhcChHHH
Confidence 2344555667777788888888888877653 122 3333322 223321000 0 00001011110 1112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046039 396 LLSACRKHGNIEMAKQAAKQIIELDKNESCGYVLMSNLYAASYQFEEAMEERLLMK 451 (502)
Q Consensus 396 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 451 (502)
-+..+...|....|...+..+.... ++.-...++....+.|.++.|+.......
T Consensus 387 ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 387 RVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 3566778999999999999887533 35566778888999999999998766653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.24 E-value=0.051 Score=39.33 Aligned_cols=111 Identities=14% Similarity=-0.011 Sum_probs=78.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHh----cCCHHHH
Q 046039 302 YENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVDALGR----AGLLEEA 377 (502)
Q Consensus 302 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 377 (502)
++++|+.+|++..+.|.. .....+. .....+.++|..++++..+. + ++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 677888888888877632 2222232 23456888999999888764 3 44555556666654 4578999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 046039 378 EKLIRSMPSDPDAIIWGSLLSACRK----HGNIEMAKQAAKQIIELDK 421 (502)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 421 (502)
.++|++....-++.....|...|.. ..+.++|.+.|+++.+...
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9999988766677777778887776 4689999999999877553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.03 E-value=0.078 Score=36.86 Aligned_cols=138 Identities=16% Similarity=0.074 Sum_probs=101.5
Q ss_pred HHhcCCchhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHHhhcCCCCCee---eHHHHHHHHHhcCCHHHH
Q 046039 98 YAQLGLARDGAQLHGRVVKQGLEFDQFIHNTIIYMYANCGFLSEARLMFDEVDTEFDVV---AWNSMIIGLAKCGEIDES 174 (502)
Q Consensus 98 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a 174 (502)
+.-.|..++..+++.+..... +..-||.++--....-+-+...+.++.+.+-.|.. ....++.++...+
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n----- 83 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN----- 83 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT-----
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhc-----
Confidence 456788999999998888754 55667777777777778788888887766422221 1223333333332
Q ss_pred HHHHHccCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC
Q 046039 175 RRLFDKMVSRNTVSWNSMISGYVRNVKFKEALELFREMQEQNIKPSEFTMVSLLNACAKLGAIRQGEWIHNFLVTNCFE 253 (502)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 253 (502)
.+....+..+....++|.-++-.++++.+.+.+ +|++.....+..+|.+.|+..++.+++.++-+.|.+
T Consensus 84 ---------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 84 ---------TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ---------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ---------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 344556677788899999999999999988865 888889999999999999999999999999888854
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| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.93 E-value=0.043 Score=38.54 Aligned_cols=69 Identities=6% Similarity=-0.149 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCc-chHHHHHHHHHhcCCchHHHHHHHHhhhcCCc
Q 046039 388 PDAIIWGSLLSACRKHG---NIEMAKQAAKQIIELDKNES-CGYVLMSNLYAASYQFEEAMEERLLMKEVKIE 456 (502)
Q Consensus 388 ~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 456 (502)
+.+.+--..++++.++. +.++++.+++++++.+|.+. ..++.|+.+|.+.|++++|.++++.+.+..+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 66667777788887765 45688888888888888664 67888888899999999999988888766543
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| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.11 E-value=0.21 Score=32.80 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 046039 303 ENEAIKLFSGLQSSNLKPDYISFIAVLTACNHSGKVNQAKDYFTLMTETYKIKPSIKHYSCMVD 366 (502)
Q Consensus 303 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 366 (502)
.=++.+-++.+...++.|++......+++|.+.+++..|.++++.+..+.+ ++...|..+++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 335566677777788899999999999999999999999999999887533 34556666654
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