Citrus Sinensis ID: 046046

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MLPRWSRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQLVVSLDKMFWSKPASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVELRVSKAG
Secondary Structure (PSIPRED)
ccccHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccHHHHccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccccccccEEEHHHHccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MLPRWSRAVRSLNSITQRNDFHAISRQSYAMATAAAasvepaprptkQLVVSLDkmfwskpaslalapdsplrvdepkyegIKHFILKLMLFYSKqsksirganVIYKRVVsqvdkpaiydVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVELRVSKAG
Flexible Loop (DISEMBL)
MLPRWSRAVRslnsitqrndfHAISRQSYAMATAAAasvepaprPTKQLVVSLDKMFWSKPASlalapdsplrvdEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLygiynhdvELRVSKAG
Low Complexity Region (SEG)
MLPRWSRAVRSLNSITQRNDFHAISRQSYamataaaasvepaprpTKQLVVSLDKMFWSKPASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRlkeegkegvelgQYLYGIYNHDVELRVSKAG
Disordered region (IsUnstruct)
************************************************LVVSLDKMFWSKPASLALA****LRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVEL******
Disordered Region (DISOPRED)
*********************************************************************************IKHFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEE**EGVELGQYLYGIYNHDVELRVSKA*
Disordered Region (DISEMBL)
********VRSLNSITQRNDFHAISRQSY***************PTKQLVVSLDKMFWSKPASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVELRVSKAG
Disordered Region (DISPRO)
*L*RWSRAVRSLNSITQRNDFHAISRQSYAMATAAAAS******PTKQLVVSLDKMFWSKPASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVELRVSKA*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPRWSRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQLVVSLDKMFWSKPASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVELRVSKAG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
359490078	285	PREDICTED: ubiquinol-cytochrome c reduct	0.994	0.617	0.672	1e-64
297745034	354	unnamed protein product [Vitis vinifera]	0.994	0.497	0.672	2e-64
255641101	255	unknown [Glycine max]	0.971	0.674	0.701	3e-64
118489171	291	unknown [Populus trichocarpa x Populus d	1.0	0.608	0.661	4e-61
255539881	261	conserved hypothetical protein [Ricinus	0.988	0.670	0.649	8e-61
30696021	281	ubiquinol-cytochrome C chaperone family	0.983	0.619	0.645	2e-60
387169552	222	hypothetical protein 34G24.10 [Capsella	0.983	0.783	0.655	3e-60
110737777	281	hypothetical protein [Arabidopsis thalia	0.983	0.619	0.639	5e-60
297795925	281	ubiquinol-cytochrome C chaperone family	1.0	0.629	0.655	2e-59
449461829	290	PREDICTED: ubiquinol-cytochrome c reduct	1.0	0.610	0.664	8e-59

>gi|359490078|ref|XP_002264821.2| PREDICTED: ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog [Vitis vinifera]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 123/183 (67%), Positives = 144/183 (78%), Gaps = 7/183 (3%)

Query: 1   MLPRWSRA------VRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQLVVSLD 54
           MLPRWSRA      + S N++  R DF  ++ +SYA   AAAA        +++  V  +
Sbjct: 1   MLPRWSRAAIRLYKLGSQNNMELRKDFCFVASRSYA-KVAAAADDSTEKNFSRKPEVYFN 59

Query: 55  KMFWSKPASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVVSQV 114
           KMFWSKP SLALA DSPLRV+EPKYEGI+H I K++LFYSKQSKSIRGANV+Y+R+ SQV
Sbjct: 60  KMFWSKPCSLALAQDSPLRVEEPKYEGIRHIIFKMLLFYSKQSKSIRGANVVYRRIASQV 119

Query: 115 DKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVELRVS 174
           DKPAIY+ FNLEKTF+ TFSLL+LHMW CLRRLKE+GKEGVE GQYLY IYNHDVELRVS
Sbjct: 120 DKPAIYNAFNLEKTFKTTFSLLILHMWLCLRRLKEDGKEGVEFGQYLYEIYNHDVELRVS 179

Query: 175 KAG 177
           KAG
Sbjct: 180 KAG 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745034|emb|CBI38626.3| unnamed protein product [Vitis vinifera]

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 123/183 (67%), Positives = 144/183 (78%), Gaps = 7/183 (3%)

Query: 1   MLPRWSRA------VRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQLVVSLD 54
           MLPRWSRA      + S N++  R DF  ++ +SYA   AAAA        +++  V  +
Sbjct: 70  MLPRWSRAAIRLYKLGSQNNMELRKDFCFVASRSYA-KVAAAADDSTEKNFSRKPEVYFN 128

Query: 55  KMFWSKPASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVVSQV 114
           KMFWSKP SLALA DSPLRV+EPKYEGI+H I K++LFYSKQSKSIRGANV+Y+R+ SQV
Sbjct: 129 KMFWSKPCSLALAQDSPLRVEEPKYEGIRHIIFKMLLFYSKQSKSIRGANVVYRRIASQV 188

Query: 115 DKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVELRVS 174
           DKPAIY+ FNLEKTF+ TFSLL+LHMW CLRRLKE+GKEGVE GQYLY IYNHDVELRVS
Sbjct: 189 DKPAIYNAFNLEKTFKTTFSLLILHMWLCLRRLKEDGKEGVEFGQYLYEIYNHDVELRVS 248

Query: 175 KAG 177
           KAG
Sbjct: 249 KAG 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641101|gb|ACU20829.1| unknown [Glycine max]

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 127/181 (70%), Positives = 146/181 (80%), Gaps = 9/181 (4%)

Query: 1   MLPRWSRAVRSLN---SITQRNDFHAISRQSYAMATAAAASVEPAP-RPTKQLVVSLDKM 56
           ML RWS+AV  ++   S +  N    +SRQ+YA   A A ++E  P RP    VV+LDKM
Sbjct: 1   MLRRWSKAVTPISKFGSQSHLNFVKDVSRQTYA-GVAPAPTIEDKPHRP----VVNLDKM 55

Query: 57  FWSKPASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVVSQVDK 116
           FWSKP SLAL  DSPLRV+EP Y+GIK  +LKLMLFYSKQSKSIRGANV+Y+R++SQVDK
Sbjct: 56  FWSKPCSLALPRDSPLRVEEPDYQGIKRLMLKLMLFYSKQSKSIRGANVVYQRIISQVDK 115

Query: 117 PAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVELRVSKA 176
           P IY+VFNLEKTF+ TFSLLVLHMWFCLRRLK+EGKEGVE GQYLY IYNHDVELRVSKA
Sbjct: 116 PPIYEVFNLEKTFKTTFSLLVLHMWFCLRRLKQEGKEGVEFGQYLYEIYNHDVELRVSKA 175

Query: 177 G 177
           G
Sbjct: 176 G 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489171|gb|ABK96392.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 125/189 (66%), Positives = 148/189 (78%), Gaps = 12/189 (6%)

Query: 1   MLPRWSRAVRSL-------NSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQL---- 49
           ML R SRA  S        N+ ++   F  IS QSYA A  AAA        ++++    
Sbjct: 1   MLARCSRAAASHFFHQLRNNNNSKDAAFKFISHQSYAKAATAAAMAASPILSSQKVFPSN 60

Query: 50  -VVSLDKMFWSKPASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYK 108
            VV+LDKMF SKP SLALAPDSPLR++EP+YEGI+ F+LKL+LFYSKQSKSIRGANV+Y+
Sbjct: 61  SVVNLDKMFRSKPCSLALAPDSPLRIEEPEYEGIRRFVLKLLLFYSKQSKSIRGANVVYR 120

Query: 109 RVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHD 168
           R+VSQVD+PAIY+VFNLEKTF+MTFSLLVLHMW CLRRLK+EG+EGVE GQY+Y IYNHD
Sbjct: 121 RIVSQVDRPAIYEVFNLEKTFKMTFSLLVLHMWLCLRRLKQEGREGVEFGQYIYEIYNHD 180

Query: 169 VELRVSKAG 177
           VELRVSKAG
Sbjct: 181 VELRVSKAG 189

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539881|ref|XP_002511005.1| conserved hypothetical protein [Ricinus communis] gi|223550120|gb|EEF51607.1| conserved hypothetical protein [Ricinus communis]

 Score =  238 bits (607), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 124/191 (64%), Positives = 146/191 (76%), Gaps = 16/191 (8%)

Query: 1   MLPRWSRA-------VRSLNSITQ-RNDFHAISRQSYAMATAAAASVEPAPRPTKQLV-- 50
           ML RWSRA       +RSL + T+ R D   I R +YA A+AA   V PAP  +      
Sbjct: 1   MLSRWSRAAASQVSNLRSLTNATKLRKDHLFIPRLTYAKASAAV--VSPAPNDSTHNTFP 58

Query: 51  ----VSLDKMFWSKPASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVI 106
               V LDKMFWSKP SLALA DSP+RV EP+++GI+ F+LKLMLFYSKQSKSIR ANV+
Sbjct: 59  SNSPVKLDKMFWSKPCSLALALDSPIRVYEPEFQGIRRFMLKLMLFYSKQSKSIRRANVV 118

Query: 107 YKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYN 166
           Y+R++S+V+KP IY+VFNLEKTF+MTFSLLVLHMW  LRRLK+EG+EGVE GQYLY IYN
Sbjct: 119 YRRIISRVNKPTIYEVFNLEKTFKMTFSLLVLHMWLVLRRLKQEGQEGVEFGQYLYEIYN 178

Query: 167 HDVELRVSKAG 177
           HDVELRVSKAG
Sbjct: 179 HDVELRVSKAG 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696021|ref|NP_199935.2| ubiquinol-cytochrome C chaperone family protein [Arabidopsis thaliana] gi|63025180|gb|AAY27063.1| At5g51220 [Arabidopsis thaliana] gi|87116650|gb|ABD19689.1| At5g51220 [Arabidopsis thaliana] gi|332008671|gb|AED96054.1| ubiquinol-cytochrome C chaperone family protein [Arabidopsis thaliana]

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/186 (64%), Positives = 143/186 (76%), Gaps = 12/186 (6%)

Query: 1   MLPRWSRAV------RSLNSITQRNDFHAISRQSYAMATAAAASVEPAPR---PTKQLVV 51
           MLPR +R V      RSL +     +    SR  Y  AT A A+ +P  +   P+K   +
Sbjct: 1   MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSR--YGYATVAPAAADPPSQKDFPSKS-PI 57

Query: 52  SLDKMFWSKPASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVV 111
           +LDKMFWSKP SLAL  DSPLR+DEP Y GI+ FILK+M+FYSKQS SIRGANVIYKR++
Sbjct: 58  NLDKMFWSKPCSLALPKDSPLRIDEPDYVGIRRFILKMMMFYSKQSMSIRGANVIYKRII 117

Query: 112 SQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVEL 171
           +QVDKPAIYDVFNLEKTF++T+SLLVLHMW  LRRLKE+G+EGV+LGQY+Y IYNHDVEL
Sbjct: 118 AQVDKPAIYDVFNLEKTFKITYSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVEL 177

Query: 172 RVSKAG 177
           RVSKAG
Sbjct: 178 RVSKAG 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387169552|gb|AFJ66211.1| hypothetical protein 34G24.10 [Capsella rubella]

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 120/183 (65%), Positives = 141/183 (77%), Gaps = 9/183 (4%)

Query: 1   MLPRWSRAVRS---LNSITQRNDFHAISRQSYAMATAAAASVEPAPR---PTKQLVVSLD 54
           MLPR +R V     L S T       +SR  Y  AT A  +V+  P+   P+K   ++LD
Sbjct: 1   MLPRLARLVTQSSKLRSFTTNGSMLNLSR--YGYATVAPETVDAPPQKYFPSKS-PINLD 57

Query: 55  KMFWSKPASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVVSQV 114
           KMFWSKP SLAL  DSPLR+DEP Y GI+ FILK+M+FYSKQS SIRGANVIYKR+++QV
Sbjct: 58  KMFWSKPCSLALPKDSPLRIDEPDYVGIRRFILKMMMFYSKQSMSIRGANVIYKRIIAQV 117

Query: 115 DKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVELRVS 174
           DKPAIYD FNLEKTF++TFSLLVLHMW  LRRLKE+G+EGV+LGQY+Y IYNHDVELRVS
Sbjct: 118 DKPAIYDAFNLEKTFKITFSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVELRVS 177

Query: 175 KAG 177
           KAG
Sbjct: 178 KAG 180

Source: Capsella rubella

Species: Capsella rubella

Genus: Capsella

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110737777|dbj|BAF00827.1| hypothetical protein [Arabidopsis thaliana]

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 119/186 (63%), Positives = 142/186 (76%), Gaps = 12/186 (6%)

Query: 1   MLPRWSRAV------RSLNSITQRNDFHAISRQSYAMATAAAASVEPAPR---PTKQLVV 51
           MLPR +R V      RSL +     +    SR  Y  AT A A+ +P  +   P+K   +
Sbjct: 1   MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSR--YGYATVAPAAADPPSQKDFPSKS-PI 57

Query: 52  SLDKMFWSKPASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVV 111
           +LDKMFWSKP SL L  DSPLR+DEP Y GI+ FILK+M+FYSKQS SIRGANVIYKR++
Sbjct: 58  NLDKMFWSKPCSLVLPKDSPLRIDEPDYVGIRRFILKMMMFYSKQSMSIRGANVIYKRII 117

Query: 112 SQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVEL 171
           +QVDKPAIYDVFNLEKTF++T+SLLVLHMW  LRRLKE+G+EGV+LGQY+Y IYNHDVEL
Sbjct: 118 AQVDKPAIYDVFNLEKTFKITYSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVEL 177

Query: 172 RVSKAG 177
           RVSKAG
Sbjct: 178 RVSKAG 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795925|ref|XP_002865847.1| ubiquinol-cytochrome C chaperone family protein [Arabidopsis lyrata subsp. lyrata] gi|297311682|gb|EFH42106.1| ubiquinol-cytochrome C chaperone family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 120/183 (65%), Positives = 138/183 (75%), Gaps = 6/183 (3%)

Query: 1   MLPRWSRAV------RSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQLVVSLD 54
           MLPR +R V      RSL +     +    SR  YA    AAA   P      +  ++LD
Sbjct: 1   MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSRYGYATVAPAAADPPPKKDFPSKSPINLD 60

Query: 55  KMFWSKPASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVVSQV 114
           KMFWSKP SLAL  DSPLR+DEP Y GI+ FILKLM+FYSKQS SIRGANVIYKR+++QV
Sbjct: 61  KMFWSKPCSLALPKDSPLRIDEPDYVGIRRFILKLMMFYSKQSMSIRGANVIYKRIIAQV 120

Query: 115 DKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVELRVS 174
           DKPAIYDVFNLEKTF++TFSLLVLHMW  LRRLKE+G+EGV+LGQY+Y IYNHDVELRVS
Sbjct: 121 DKPAIYDVFNLEKTFKITFSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVELRVS 180

Query: 175 KAG 177
           KAG
Sbjct: 181 KAG 183

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461829|ref|XP_004148644.1| PREDICTED: ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog [Cucumis sativus] gi|449516820|ref|XP_004165444.1| PREDICTED: ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog [Cucumis sativus]

 Score =  231 bits (589), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 123/185 (66%), Positives = 142/185 (76%), Gaps = 8/185 (4%)

Query: 1   MLPRWSRAVRSLNSITQRNDF------HAISRQSYA-MATAAAASVEPAPRP-TKQLVVS 52
           ML +WSR  R L+ I   ++F      H    +SYA +A AAA ++  + +  +   VV 
Sbjct: 1   MLAKWSRVTRHLSRIGLESNFKFSTDLHVCPHRSYAKVAAAAAPNIGHSEKGVSGGHVVH 60

Query: 53  LDKMFWSKPASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVVS 112
           LDKMF SKP SLAL  DSPLR+DEP+YEGIK   L++MLFYSKQSK IR ANVIY+RVVS
Sbjct: 61  LDKMFLSKPCSLALPKDSPLRMDEPQYEGIKRLFLRMMLFYSKQSKHIRAANVIYQRVVS 120

Query: 113 QVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVELR 172
           QVDKPAIYDVFNLEKTF+ TFSLLVLHMW CLRRLKEEGKEGVE GQY+Y +YNHDVELR
Sbjct: 121 QVDKPAIYDVFNLEKTFKTTFSLLVLHMWLCLRRLKEEGKEGVERGQYVYELYNHDVELR 180

Query: 173 VSKAG 177
           VSKAG
Sbjct: 181 VSKAG 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
TAIR|locus:2176227	281	AT5G51220 "AT5G51220" [Arabido	1.0	0.629	0.568	3.7e-48

TAIR|locus:2176227 AT5G51220 "AT5G51220" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 104/183 (56%), Positives = 121/183 (66%)

Query:     1 MLPRWSRAV------RSLNSITQRNDFHAISRQSYXXXXXXXXXXXXXXXXTKQLVVSLD 54
             MLPR +R V      RSL +     +    SR  Y                  +  ++LD
Sbjct:     1 MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSRYGYATVAPAAADPPSQKDFPSKSPINLD 60

Query:    55 KMFWSKPASLALAPDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVVSQV 114
             KMFWSKP SLAL  DSPLR+DEP Y GI+ FILK+M+FYSKQS SIRGANVIYKR+++QV
Sbjct:    61 KMFWSKPCSLALPKDSPLRIDEPDYVGIRRFILKMMMFYSKQSMSIRGANVIYKRIIAQV 120

Query:   115 DKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXXXXXXXXXXQYLYGIYNHDVELRVS 174
             DKPAIYDVFNLEKTF++T+SLLVLHMW  LRR            QY+Y IYNHDVELRVS
Sbjct:   121 DKPAIYDVFNLEKTFKITYSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVELRVS 180

Query:   175 KAG 177
             KAG
Sbjct:   181 KAG 183


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      177       149   0.00078  104 3  11 22  0.39    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  559 (59 KB)
  Total size of DFA:  140 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.58u 0.18s 11.76t   Elapsed:  00:00:01
  Total cpu time:  11.58u 0.18s 11.76t   Elapsed:  00:00:01
  Start:  Fri May 10 17:22:23 2013   End:  Fri May 10 17:22:24 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030808001 SubName- Full=Chromosome undetermined scaffold_52, whole genome shotgun sequence; (260 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	177
pfam03981	139	pfam03981, Ubiq_cyt_C_chap, Ubiquinol-cytochrome C	3e-15
COG5452	180	COG5452, COG5452, Uncharacterized conserved protei	1e-06

>gnl|CDD|217828 pfam03981, Ubiq_cyt_C_chap, Ubiquinol-cytochrome C chaperone

 Score = 68.4 bits (168), Expect = 3e-15
 Identities = 23/57 (40%), Positives = 33/57 (57%)

Query: 121 DVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVELRVSKAG 177
           +   +  TF   F + VLH+W  LRRL+ EG EG EL Q L+  +  DV+ R+ + G
Sbjct: 1   EALGVPDTFNGRFQMTVLHVWLLLRRLRAEGPEGKELEQELFDAFFEDVDARLREEG 57

Length = 139

>gnl|CDD|227739 COG5452, COG5452, Uncharacterized conserved protein [Function unknown]

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 89  LMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLK 148
           L LF  K+  ++     +Y  +V+   +PA Y    +  T    F +L LHM     RLK
Sbjct: 3   LDLFLKKRPANLAIVKRLYASIVAAARQPAFYRDLGVPDTPLGRFEMLSLHMILYFHRLK 62

Query: 149 EEGKEGVELGQYLYGIYNHDV-----ELRVSKAG 177
            EG+   E+ Q +   +  DV     EL +   G
Sbjct: 63  GEGEAAQEIAQEIVDAFFKDVDHSLRELGIGDQG 96

Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
KOG2873	284	consensus Ubiquinol cytochrome c reductase assembl	99.96
COG5452	180	Uncharacterized conserved protein [Function unknow	99.91
PF03981	141	Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone	99.76

>KOG2873 consensus Ubiquinol cytochrome c reductase assembly protein CBP3 [Energy production and conversion]

Probab=99.96  E-value=1.1e-29  Score=219.91  Aligned_cols=169  Identities=41%  Similarity=0.602  Sum_probs=134.6

Q ss_pred             chHHHhhhhhccccccchhhhhhhhHHHHHHhhhcccCC----CC-CCCc-----c-----chhccchhhhccccccccC
Q 046046            3 PRWSRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEP----AP-RPTK-----Q-----LVVSLDKMFWSKPASLALA   67 (177)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~-----~-----~~~~l~~~~~~kp~sl~~~   67 (177)
                      +|..|.+....++.+ +.+...+......+. ..|.+++    .| .-+.     .     -.+++++++|+.|||++..
T Consensus         2 s~~~~v~~~~~~~~~-tp~~s~~~y~~~t~~-~~~~p~~~l~~spc~~~~~~pV~e~q~~~l~~~~d~~k~~~P~~~~~~   79 (284)
T KOG2873|consen    2 SRLRRVLRLTPKLRR-TPVGSMKIYSHFTRY-FGASPSPLLNSSPCECSGLTPVFEPQNLPLSVNLDSMKWSPPCSLAAK   79 (284)
T ss_pred             chhHHhhccCcceee-ccccccccccccccc-ccCCChhhhccCccccccCCcccccccccccccccccccCCCcchhhc
Confidence            567777888888887 555555554444344 2222210    01 0000     1     1247889999999999999


Q ss_pred             CCCCCCCCCcchhhhHHHHHHHHhhhcccchhhhhHHHHHHHHHHhccchhhhhhcCCCCchhhHHHHHHHHHHHHHHHH
Q 046046           68 PDSPLRVDEPKYEGIKHFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRL  147 (177)
Q Consensus        68 ~~S~~~~~ep~~~g~~~~i~kl~g~~~k~s~~~raa~~LY~~ivaqar~p~fY~~~glPDTF~gwF~m~~LHvWLllvRL  147 (177)
                      .+.+.+.-||...|++.++....-+|..    .+++..+|..|+++.+.+.||++|+|||||++||+||+||+|||++||
T Consensus        80 ~~~~~ri~~~d~~gf~~~~~~~s~~y~~----~~as~~~y~~~~~~~df~~fy~~f~Lp~TF~sWf~iT~LH~W~ll~Rl  155 (284)
T KOG2873|consen   80 GGLPLRIDEPDKVGFRRFILTGSMKYKI----QSASIQIYKDCIAQVDFEAFYEDFNLPDTFSSWFQITVLHVWLLLMRL  155 (284)
T ss_pred             cCceeeeccccccceeeccchhHHHHHH----HHHHHHHHhhhhhhccHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987766665533    445557999999999999999999999999999999999999999999


Q ss_pred             hhcCc-hhhHHHHHHHHHHHHHHHHHHHhcC
Q 046046          148 KEEGK-EGVELGQYLYGIYNHDVELRVSKAG  177 (177)
Q Consensus       148 Raeg~-~G~~l~Q~L~D~ff~DmE~RlRe~G  177 (177)
                      |+||. +|+.++|.|++.||+|||.|++++|
T Consensus       156 ~~eg~~~g~~l~q~lv~~mw~DvelR~~k~g  186 (284)
T KOG2873|consen  156 KAEGQGEGVDLQQYLVERMWEDVELRLSKAG  186 (284)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99998 8999999999999999999999987

>COG5452 Uncharacterized conserved protein [Function unknown]

Probab=99.91  E-value=4.1e-24  Score=173.65  Aligned_cols=88  Identities=25%  Similarity=0.437  Sum_probs=81.6

Q ss_pred             Hhhhcccc-hhhhhHHHHHHHHHHhccchhhhhhcCCCCchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHH
Q 046046           90 MLFYSKQS-KSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHD  168 (177)
Q Consensus        90 ~g~~~k~s-~~~raa~~LY~~ivaqar~p~fY~~~glPDTF~gwF~m~~LHvWLllvRLRaeg~~G~~l~Q~L~D~ff~D  168 (177)
                      ++.|.|++ .+..++.+||..+|+++|+|.||.++|||||..|||+|+.|||.++++|+|.+|+.+.+++|+|+|.||.|
T Consensus         3 ~~lf~k~~~an~Ai~krlYa~~vaaARq~~fY~d~~VpDt~~GRfEmlSlh~il~~~R~kg~g~a~qeiaQei~Daff~d   82 (180)
T COG5452           3 LDLFLKKRPANLAIVKRLYASIVAAARQPAFYRDLGVPDTPLGRFEMLSLHMILYFHRLKGEGEAAQEIAQEIVDAFFKD   82 (180)
T ss_pred             hHHhcCCCchhHHHHHHHHHHHHHHHhchhHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence            45555666 45567788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 046046          169 VELRVSKAG  177 (177)
Q Consensus       169 mE~RlRe~G  177 (177)
                      +|+.+||+|
T Consensus        83 vDhs~RElG   91 (180)
T COG5452          83 VDHSLRELG   91 (180)
T ss_pred             hhHHHHHhC
Confidence            999999998

>PF03981 Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone ; InterPro: IPR021150 Saccharomyces cerevisiae ubiquinol-cytochrome C chaperone is required for assembly of coenzyme QF-2-cytochrome C reductase

Probab=99.76  E-value=1.2e-18  Score=134.73  Aligned_cols=57  Identities=44%  Similarity=0.775  Sum_probs=55.4

Q ss_pred             hhcCCCCchhhHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhcC
Q 046046          121 DVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYGIYNHDVELRVSKAG  177 (177)
Q Consensus       121 ~~~glPDTF~gwF~m~~LHvWLllvRLRaeg~~G~~l~Q~L~D~ff~DmE~RlRe~G  177 (177)
                      ++||+||||++||+++.||+||+++|||+++++|+.+.|.|+|.||+|+|.|||++|
T Consensus         1 ~~~~~~dt~~~~f~~~~lh~~l~~~RLk~~~~~~~~~~q~l~~~~~~d~~~~l~~~g   57 (141)
T PF03981_consen    1 EHFGVPDTFAGRFQMLGLHVWLVLRRLKAEGKEGKELEQALFDKFFEDMDERLREMG   57 (141)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            579999999999999999999999999999988999999999999999999999987

It appears to be found in a number of different organisms including Homo sapiens, Caenorhabditis elegans and Rhizobium meliloti. This entry also contains bacterial proteins belonging to the UPF0174 family.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00